Citrus Sinensis ID: 036143
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 355 | 2.2.26 [Sep-21-2011] | |||||||
| O81825 | 919 | Probable disease resistan | yes | no | 0.830 | 0.321 | 0.258 | 2e-10 | |
| Q9T048 | 985 | Disease resistance protei | no | no | 0.915 | 0.329 | 0.229 | 0.0001 | |
| Q9FLB4 | 874 | Putative disease resistan | no | no | 0.822 | 0.334 | 0.231 | 0.0002 |
| >sp|O81825|DRL28_ARATH Probable disease resistance protein At4g27220 OS=Arabidopsis thaliana GN=At4g27220 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 91/352 (25%), Positives = 152/352 (43%), Gaps = 57/352 (16%)
Query: 1 RLERVPSLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSK-MLIKFPAGILPKLC 59
+L +PSL L+ LQ LDL +AI+E+P G+E L +L ++ + + L PAG + +L
Sbjct: 553 KLRNLPSLESLVKLQFLDLHESAIRELPRGLEALSSLRYICVSNTYQLQSIPAGTILQLS 612
Query: 60 NLYSLRL-----NWGSETSRETVQEAARSSDRLDTFVGYFSKLDDFNTYVKSSDG--QRS 112
+L L + +WG + Q L KL D ++ D +R
Sbjct: 613 SLEVLDMAGSAYSWGIKGEEREGQATLDEVTCLPHLQFLAIKLLDVLSFSYEFDSLTKRL 672
Query: 113 KHFHFQVSTVYNGSAANT------------------------------------RFYSFL 136
F F S + + S T + L
Sbjct: 673 TKFQFLFSPIRSVSPPGTGEGCLAISDVNVSNASIGWLLQHVTSLDLNYCEGLNGMFENL 732
Query: 137 RTREANKSVCFYGCKICEREGVTIVLPKDVQGLIMRDIEDVTSLNDVFSKEQGLVN---A 193
T+ + V I +++ + Q + ++E++ SL++V + G +N
Sbjct: 733 VTKSKSSFVAMKALSIHYFPSLSLASGCESQLDLFPNLEEL-SLDNVNLESIGELNGFLG 791
Query: 194 AKFSHLKALWFSYCPNLQKLFSLQLLAA-LQNLEFLVVQSCNRNEEIVEVNDEETQKELG 252
+ LK L S C L++LFS Q+LA L NL+ + V SC R EE+ + +
Sbjct: 792 MRLQKLKLLQVSGCRQLKRLFSDQILAGTLPNLQEIKVVSCLRLEELFNF----SSVPVD 847
Query: 253 ISAITITLPRLKKLWLSFLPELKSVCSDNAVLICNSLQEIQITPSCPKLKRL 304
A ++ LP+L + L +LP+L+S+C+D VL SL+ +++ SC LK L
Sbjct: 848 FCAESL-LPKLTVIKLKYLPQLRSLCNDRVVL--ESLEHLEV-ESCESLKNL 895
|
Probable disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9T048|DRL27_ARATH Disease resistance protein At4g27190 OS=Arabidopsis thaliana GN=At4g27190 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 93/405 (22%), Positives = 156/405 (38%), Gaps = 80/405 (19%)
Query: 1 RLERVPSLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKM-LIKFPAGILPKLC 59
+L ++PSL L L+ LDL T I E P G+E L+ HL + + L PA ++ +L
Sbjct: 586 KLVKLPSLETLAKLELLDLCGTHILEFPRGLEELKRFRHLDLSRTLHLESIPARVVSRLS 645
Query: 60 NLYSLRLN-----WG----SETSRETVQEAA-------------RSSDRLDTFVGYFSKL 97
+L +L + W ++ + TV+E S L+ + +L
Sbjct: 646 SLETLDMTSSHYRWSVQGETQKGQATVEEIGCLQRLQVLSIRLHSSPFLLNKRNTWIKRL 705
Query: 98 DDFNTYVKSSDGQRSKH-------FHFQVSTV-------YNGSAA--NTRFYSFLRTREA 141
F V S R++H H VS V Y S A + + + +
Sbjct: 706 KKFQLVVGSRYILRTRHDKRRLTISHLNVSQVSIGWLLAYTTSLALNHCQGIEAMMKKLV 765
Query: 142 NKSVCFYGCKICEREGVTIVLPKDVQGLIMRDIEDVTSLNDVFSKEQGL----VNAAKFS 197
+ + F K E V I V+ + + + + D+ + L V+ FS
Sbjct: 766 SDNKGFKNLKSLTIENVIINTNSWVEMVSTNTSKQSSDILDLLPNLEELHLRRVDLETFS 825
Query: 198 HL-----------KALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVNDEE 246
L K + + C L+ L + + NLE + + C+ + + E
Sbjct: 826 ELQTHLGLKLETLKIIEITMCRKLRTLLDKRNFLTIPNLEEIEISYCDSLQNLHE----- 880
Query: 247 TQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAVLICNSLQEIQITPSCPKLKRLSL 306
+ +P L+ L L LP L S+C+ V C L+++++ C +L
Sbjct: 881 -----ALLYHQPFVPNLRVLKLRNLPNLVSICNWGEVWEC--LEQVEVI-HCNQL----- 927
Query: 307 RLPPLDNGQPSPSPALEVIKIRKEL--WESLEWDQANAKDVLNPY 349
N P S + KI+ EL WE LEWD +A + P+
Sbjct: 928 ------NCLPISSTCGRIKKIKGELSWWERLEWDDPSALTTVQPF 966
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Disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FLB4|DRL31_ARATH Putative disease resistance protein At5g05400 OS=Arabidopsis thaliana GN=At5g05400 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 83/359 (23%), Positives = 155/359 (43%), Gaps = 67/359 (18%)
Query: 5 VPSLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIK--FPAGILPKL--CN 60
+PS + L +L+ L+L T I +P+G+ L NL++L + ++K + LP L
Sbjct: 567 LPSFSPLYSLRFLNLSCTGITSLPDGLYALRNLLYLNLEHTYMLKRIYEIHDLPNLEVLK 626
Query: 61 LYSLRLNWGSETSRET--------VQEAARSSDRLDTFVGYFSKLDDFNTYVKSSDGQRS 112
LY+ ++ + R+ + R+S L+ F+G F++Y +
Sbjct: 627 LYASGIDITDKLVRQIQAMKHLYLLTITLRNSSGLEIFLGDTR----FSSYTEGL--TLD 680
Query: 113 KHFHFQVSTVYNGSAANTRFYSFLRTREAN-KSVCFYGCKICEREGVTIVLPKDVQGLIM 171
+ ++Q V + +++R FL ++++ + G E E V + +D+ + +
Sbjct: 681 EQSYYQSLKVPLATISSSR---FLEIQDSHIPKIEIEGSSSNESEIVGPRVRRDISFINL 737
Query: 172 RDI--EDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLV 229
R + ++ T L D+ W + P+L L+ + L ++E ++
Sbjct: 738 RKVRLDNCTGLKDL------------------TWLVFAPHLATLY----VVCLPDIEHII 775
Query: 230 VQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAVLICNSL 289
+R+EE QK ++ + I L+ L L L +LKS+ D L+ L
Sbjct: 776 ----SRSEE------SRLQKTCELAGV-IPFRELEFLTLRNLGQLKSIYRDP--LLFGKL 822
Query: 290 QEIQITPSCPKLKRLSLRLPPLDNGQPSPSPALEVIKIRKELWESLEWDQANAKDVLNP 348
+EI I SCPKL +L PLD+ VI +E + L+W+ K+ P
Sbjct: 823 KEINI-KSCPKLTKL-----PLDSRSAWKQNV--VINAEEEWLQGLQWEDVATKERFFP 873
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Potential disease resistance protein. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 355 | ||||||
| 224162676 | 402 | predicted protein [Populus trichocarpa] | 0.949 | 0.838 | 0.370 | 2e-44 | |
| 224115986 | 1093 | BED finger-nbs-lrr resistance protein [P | 0.952 | 0.309 | 0.373 | 5e-43 | |
| 224112395 | 1062 | nbs-lrr resistance protein [Populus tric | 0.963 | 0.322 | 0.371 | 2e-42 | |
| 224110812 | 681 | predicted protein [Populus trichocarpa] | 0.957 | 0.499 | 0.355 | 1e-39 | |
| 224145639 | 1010 | BED finger-nbs-lrr resistance protein [P | 0.969 | 0.340 | 0.339 | 5e-39 | |
| 224109376 | 877 | predicted protein [Populus trichocarpa] | 0.960 | 0.388 | 0.341 | 3e-38 | |
| 224108229 | 900 | BED finger-nbs-lrr resistance protein [P | 0.946 | 0.373 | 0.352 | 4e-38 | |
| 224128410 | 1075 | BED finger-nbs-lrr resistance protein [P | 0.960 | 0.317 | 0.328 | 4e-38 | |
| 224144593 | 621 | predicted protein [Populus trichocarpa] | 0.949 | 0.542 | 0.333 | 6e-37 | |
| 224109372 | 1077 | BED finger-nbs-lrr resistance protein [P | 0.969 | 0.319 | 0.343 | 6e-37 |
| >gi|224162676|ref|XP_002338470.1| predicted protein [Populus trichocarpa] gi|222872388|gb|EEF09519.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 144/389 (37%), Positives = 201/389 (51%), Gaps = 52/389 (13%)
Query: 2 LERVPSLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNL 61
L VPSL KL AL+ LDL T +K++P+GME L NL +L + +FP+GILPKL +L
Sbjct: 25 LRHVPSLEKLRALKRLDLYGTPLKKMPQGMECLTNLRYLRMNGCGEKEFPSGILPKLSHL 84
Query: 62 YSLRL----NWGSETSRETVQEAARSSDR-LDTFVGYFSKLDDFNTYVKSSDGQRS-KHF 115
L S+ + TV+ S R L++ +F DF Y++S DG +S +
Sbjct: 85 QVFVLEELMGECSDYAPITVKGKEVGSLRNLESLECHFKGFSDFVEYLRSRDGIQSLSTY 144
Query: 116 HFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICEREGVTIVLPKDVQGLIMRDIE 175
V + T F S K+V I + +QGL+ I
Sbjct: 145 RISVGMLDESYWFGTDFLS--------KTVGLGNLSINGDGDFQVKFLNGIQGLVCECI- 195
Query: 176 DVTSLNDVFSKEQG----LVNAAKFSHLKAL----WFSY--------------------- 206
D SL DV S E L+N + +++L WF Y
Sbjct: 196 DAKSLCDVLSLENATELELINIRNCNSMESLVSSSWFCYAPPRLPSYNGTFSGLKEFYCV 255
Query: 207 -CPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKK 265
C +++KLF L LL NLE +VV+ C + EEI+ DEE+ I+ + LP+L+
Sbjct: 256 RCKSMKKLFPLVLLPNFVNLEVIVVEDCEKMEEIIGTTDEESNTSSSIAE--LKLPKLRA 313
Query: 266 LWLSFLPELKSVCSDNAVLICNSLQEIQITPSCPKLKRLSLRLPPLDNGQPSPSPALEVI 325
L L +LPELKS+CS A LICNSL++I + C KLKR+ + LP L+NGQPSP P+L+ I
Sbjct: 314 LRLRYLPELKSICS--AKLICNSLEDITVM-YCEKLKRMPICLPLLENGQPSPPPSLKKI 370
Query: 326 KIR-KELWES-LEWDQANAKDVLNPYCKF 352
+ R KE WE+ +EW+ NAKDVL P+ KF
Sbjct: 371 EARPKEWWETVVEWEHPNAKDVLRPFVKF 399
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224115986|ref|XP_002332020.1| BED finger-nbs-lrr resistance protein [Populus trichocarpa] gi|222875245|gb|EEF12376.1| BED finger-nbs-lrr resistance protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 144/386 (37%), Positives = 200/386 (51%), Gaps = 48/386 (12%)
Query: 2 LERVPSLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNL 61
L VPSL KL+AL+ LDL TA+K++P+GME L NL +L + +FP+GIL KL +L
Sbjct: 718 LRHVPSLKKLMALKRLDLSRTALKKMPQGMECLNNLRYLRMNGCGEKEFPSGILSKLSHL 777
Query: 62 YSLRLNWGSETSRE---TVQEAARSSDR-LDTFVGYFSKLDDFNTYVKSSDGQRS-KHFH 116
L R TV+ S R LDT +F DF Y++S DG +S +
Sbjct: 778 QVFVLEETLIDRRYAPITVKGKEVGSLRNLDTLECHFKGFSDFVEYLRSQDGIQSLSGYR 837
Query: 117 FQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICEREGVTIVLPKDVQGLIMRDIED 176
V V T F+ ++ K V I ++ D+QGL+ I D
Sbjct: 838 ISVGMV------GTYFWKYMDNLPC-KRVRLCNLSINRDRDFQVMSLNDIQGLVCECI-D 889
Query: 177 VTSLNDVFSKEQGL----------------------------VNAAKFSHLKALWFSYCP 208
SL DV S E + + FS LK + C
Sbjct: 890 ARSLCDVLSLENATELKHISIWDCNSMESSVSSSWFCCAPPPLPSCMFSGLKEFYCVRCK 949
Query: 209 NLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWL 268
+++KLF L LL+ L NLE + V+ C + EEI+ DEE+ + I+ + LP+L+ L L
Sbjct: 950 SMKKLFPLVLLSNLVNLEVIDVRDCEKMEEIIGTTDEESSTSISITK--LILPKLRTLRL 1007
Query: 269 SFLPELKSVCSDNAVLICNSLQEIQITPSCPKLKRLSLRLPPLDNGQPSPSPALEVIKIR 328
+LPELKS+CS A LICNSL++I + C KLKR+ + LP L+NGQPSP P+L + I+
Sbjct: 1008 RYLPELKSICS--AKLICNSLEDITVE-DCDKLKRMPICLPLLENGQPSPPPSLRRMNIK 1064
Query: 329 -KELWES-LEWDQANAKDVLNPYCKF 352
KE WE+ +EW+ NAKDVL P+ KF
Sbjct: 1065 SKEWWETVVEWEHPNAKDVLRPFVKF 1090
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224112395|ref|XP_002332783.1| nbs-lrr resistance protein [Populus trichocarpa] gi|222833192|gb|EEE71669.1| nbs-lrr resistance protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 144/388 (37%), Positives = 196/388 (50%), Gaps = 46/388 (11%)
Query: 2 LERVPSLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNL 61
L VPSL KL AL+ LDL T ++++P+GME L NL HL + +FP+GILP L +L
Sbjct: 683 LRHVPSLKKLRALKRLDLFDTTLEKMPQGMECLTNLRHLRMNGCGEKEFPSGILPNLSHL 742
Query: 62 --YSLRLNWGSETSRETVQEAARSSDR-LDTFVGYFSKLDDFNTYVKSSDGQRS-KHFHF 117
+ L G+ + TV+ S R L+T +F DF Y++S DG +S +
Sbjct: 743 QVFVLEEFMGNCYAPITVKGKEVGSLRNLETLECHFEGFSDFVEYLRSRDGIQSLSTYKI 802
Query: 118 QVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICEREGVTIVLPKDVQGLIMRDIEDV 177
V V + AN + K+V I + +Q L+ I D
Sbjct: 803 LVGMVDDFYWANMD----ANIDDITKTVGLGNLSINGDGDFKVKFFNGIQRLVCERI-DA 857
Query: 178 TSLNDVFSKE----------------QGLVNA--------------AKFSHLKALWFSYC 207
SL DV S E + LV++ FS LK + C
Sbjct: 858 RSLYDVLSLENATELEAFMIRDCNNMESLVSSSWFCYTPPRLPSYNGTFSGLKEFYCGGC 917
Query: 208 PNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLW 267
N++KLF L LL NLE + V+ C + EEIV DEE+ I+ LP+L+ L
Sbjct: 918 NNMKKLFPLVLLPNFVNLEDIYVRDCEKMEEIVGTTDEESSTSNSITG--FILPKLRSLE 975
Query: 268 LSFLPELKSVCSDNAVLICNSLQEIQITPSCPKLKRLSLRLPPLDNGQPSPSPAL-EVIK 326
L LPELKS+CS A L CNSL+ I + C KLKR+++ LP L+NGQPSP P+L E+I
Sbjct: 976 LFGLPELKSICS--AKLTCNSLETISVM-HCEKLKRMAICLPLLENGQPSPPPSLEEIIV 1032
Query: 327 IRKELWES-LEWDQANAKDVLNPYCKFE 353
KE WES +EW+ NAKDVL P+ +FE
Sbjct: 1033 YPKEWWESVVEWEHPNAKDVLRPFVEFE 1060
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224110812|ref|XP_002333023.1| predicted protein [Populus trichocarpa] gi|222834655|gb|EEE73118.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 140/394 (35%), Positives = 205/394 (52%), Gaps = 54/394 (13%)
Query: 2 LERVPSLAKLLALQCLDLEYT-AIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCN 60
L VPSL KL AL+ LDL T A++++P+GME L NL +L + +FP+G+LPKL +
Sbjct: 300 LRHVPSLEKLRALRRLDLSGTWALEKMPQGMECLCNLRYLRMNGCGEKEFPSGLLPKLSH 359
Query: 61 LYSLRL----NWGSETSRETVQEAARSSDR-LDTFVGYFSKLDDFNTYVKSSDGQRSKHF 115
L L + G + + TV+ + R L++ +F DF Y+KS D +S
Sbjct: 360 LQVFELKSAKDRGGQYAPITVKGKEVACLRKLESLGCHFEGYSDFVEYLKSQDETQSLSK 419
Query: 116 HFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICEREGVTIVLPKDVQGLIMRDIE 175
+ V + + + +SF R+ K+V + + PKD+Q LI+ E
Sbjct: 420 YQIVVGLLDIN------FSFQRS----KAVFLDNLSVNRDGDFQDMFPKDIQQLIIDKCE 469
Query: 176 DVTSLNDVFS-----------------KEQGLVNA--------------AKFSHLKALWF 204
D TSL D+FS + LV++ FS L +
Sbjct: 470 DATSLCDIFSLIKYTTQLEIIWIRDCNSMESLVSSSWLCSAPLSLPSYNGIFSSLGVFYC 529
Query: 205 SYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIV--EVNDEETQKELGISAITITLPR 262
C +++KLF L LL L NLE + V C + EEI+ +DEE + S+ LP+
Sbjct: 530 YGCRSMKKLFPLVLLPHLVNLEVIQVIHCEKIEEIIGGTRSDEEGVMDEENSSSEFKLPK 589
Query: 263 LKKLWLSFLPELKSVCSDNAVLICNSLQEIQITPSCPKLKRLSLRLPPLDNGQPSPSPAL 322
L+ L L LPELKS+CS A LIC+SLQ I + +C KLK + + LP L+NGQPSP P+L
Sbjct: 590 LRCLVLYGLPELKSICS--AKLICDSLQVITVM-NCEKLKGMGICLPLLENGQPSPPPSL 646
Query: 323 E-VIKIRKELWES-LEWDQANAKDVLNPYCKFEQ 354
E ++ + +E WES +EW+ KDVL P+ KFE+
Sbjct: 647 ERIVAMPEEWWESVVEWEHPKTKDVLRPFVKFEK 680
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224145639|ref|XP_002325714.1| BED finger-nbs-lrr resistance protein [Populus trichocarpa] gi|222862589|gb|EEF00096.1| BED finger-nbs-lrr resistance protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 136/401 (33%), Positives = 205/401 (51%), Gaps = 57/401 (14%)
Query: 2 LERVPSLAKLLALQCLDLEYT-AIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCN 60
L VPSL KL L+ LDL T A++++P+GME L NL HL + +FP+G+LPKL +
Sbjct: 614 LRHVPSLEKLRVLKRLDLSGTRALEKIPQGMECLCNLRHLRMNGCGEKEFPSGLLPKLSH 673
Query: 61 LYSLRL-NW---GSETSRE------TVQEAARSSDR-LDTFVGYFSKLDDFNTYVKSSDG 109
L L W G++ +R TV+ R L++ V +F D+ ++KS D
Sbjct: 674 LQVFVLEEWIPPGTKDNRRGQPAPLTVKGKEVGCLRKLESLVCHFEGYSDYVEFIKSRDE 733
Query: 110 QRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICERE-GVTIVLPKDVQG 168
+S G + + +G +R+ G ++ PKD+Q
Sbjct: 734 TKS----LTTYQTLVGPLDKYDYDYDDYDYGCRRKTIVWGSLSIDRDGGFQVMFPKDIQQ 789
Query: 169 LIMRDIEDVTSLNDVFSK-----------------EQGLVNA--------------AKFS 197
L + + +D TSL DV S+ + LV++ FS
Sbjct: 790 LTIDNNDDATSLCDVSSQIKYATDLEVIKIFSCNSMESLVSSSWFRSTPPPSPSYNGIFS 849
Query: 198 HLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVN--DEE--TQKELGI 253
LK + S C +++KLF L LL L LE ++V+ C + +EI+ DEE +E
Sbjct: 850 GLKKFFCSGCSSMKKLFPLVLLPNLVKLEEIIVEDCEKMKEIIGGTRPDEEGVMGEETSS 909
Query: 254 SAITITLPRLKKLWLSFLPELKSVCSDNAVLICNSLQEIQITPSCPKLKRLSLRLPPLDN 313
S I LP+L+ + L LPELKS+CS A LIC+S++ I++ +C KLKR+ + LP L+N
Sbjct: 910 SNIEFKLPKLRNMELRGLPELKSICS--AKLICDSIEGIEVR-NCEKLKRMPICLPLLEN 966
Query: 314 GQPSPSPALEVIKIR-KELWES-LEWDQANAKDVLNPYCKF 352
G+PSP P+L + I +E WES +EW+ NAKDVL P+ +F
Sbjct: 967 GEPSPPPSLRRMYIEPEEWWESVVEWEHPNAKDVLRPFVEF 1007
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224109376|ref|XP_002333268.1| predicted protein [Populus trichocarpa] gi|222835869|gb|EEE74290.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 136/398 (34%), Positives = 205/398 (51%), Gaps = 57/398 (14%)
Query: 2 LERVPSLAKLLALQCLDLEYT-AIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCN 60
L VPSL KL L+ LDL T A++++P+GME L NL HL + +FP+G+LPKL +
Sbjct: 434 LRHVPSLEKLRVLKRLDLSGTRALEKIPQGMECLCNLRHLRMNGCGEKEFPSGLLPKLSH 493
Query: 61 LYSLRL-NW---GSETSRE------TVQEAARSSDR-LDTFVGYFSKLDDFNTYVKSSDG 109
L L W G++ +R TV+ R L++ V +F D+ ++KS D
Sbjct: 494 LQVFVLEEWIPPGTKDNRRGQPAPLTVKGKEVGCLRKLESLVCHFEGYSDYVEFIKSRDE 553
Query: 110 QRS-KHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICEREGVTIVLPKDVQG 168
+S + V + + R K++ + I G ++ PKD+Q
Sbjct: 554 TKSLTTYQTLVGPLDKYDYDYDDYDYGCR----RKTIVWGSLSIDRDGGFQVMFPKDIQQ 609
Query: 169 LIMRDIEDVTSLNDVFSK-----------------EQGLVNA--------------AKFS 197
L + + +D TSL DV S+ + LV++ FS
Sbjct: 610 LTIDNNDDATSLCDVSSQIKYATDLEVIKIFSCNSMESLVSSSWFRSTPPPSPSYNGIFS 669
Query: 198 HLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVN--DEET--QKELGI 253
LK + S C +++KLF L LL L LE ++V+ C + +EI+ DEE +E
Sbjct: 670 GLKKFFCSGCSSMKKLFPLVLLPNLVKLEEIIVEDCEKMKEIIGGTRPDEEGVMGEETSS 729
Query: 254 SAITITLPRLKKLWLSFLPELKSVCSDNAVLICNSLQEIQITPSCPKLKRLSLRLPPLDN 313
S I LP+L+ + L LPELKS+CS A LIC+S++ I++ +C KLKR+ + LP L+N
Sbjct: 730 SNIEFKLPKLRNMELRGLPELKSICS--AKLICDSIEGIEVR-NCEKLKRMPICLPLLEN 786
Query: 314 GQPSPSPALEVIKIR-KELWES-LEWDQANAKDVLNPY 349
G+PSP P+L + I +E WES +EW+ NAKDVL P+
Sbjct: 787 GEPSPPPSLRRMYIEPEEWWESVVEWEHPNAKDVLRPF 824
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224108229|ref|XP_002333416.1| BED finger-nbs-lrr resistance protein [Populus trichocarpa] gi|222836514|gb|EEE74921.1| BED finger-nbs-lrr resistance protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 138/391 (35%), Positives = 195/391 (49%), Gaps = 55/391 (14%)
Query: 2 LERVPSLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNL 61
L VPSL KL AL+ LDL +T +K++P+GME L NL +L + +FP+GILPKL +L
Sbjct: 524 LRHVPSLEKLRALKRLDLYWTPLKKMPQGMECLTNLRYLRMNGCGEKEFPSGILPKLSHL 583
Query: 62 YSLRLNWGSETSRE-------TVQEAARSSDR-LDTFVGYFSKLDDFNTYVKSSDGQRSK 113
L E E TV+ S R L++ +F DF Y++S DG +S
Sbjct: 584 QVFVL---EELMGECCAYAPITVKGKEVGSLRNLESLECHFEGFSDFVEYLRSRDGIQS- 639
Query: 114 HFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICEREGVTIVLPKDVQGLIMRD 173
T+ G ++ +K+V I + +QGL+
Sbjct: 640 ---LSTYTIIVGMVDTDKWIGTCAF--PSKTVGLGNLSINGDGDFQVKYLNGIQGLVCEC 694
Query: 174 IEDVTSLNDVFSKE----------------QGLVNA--------------AKFSHLKALW 203
I D SL DV S E + LV++ FS LK +
Sbjct: 695 I-DARSLCDVLSLENATELELIRIEDCNNMESLVSSSWFCSAPPPLPSYNGMFSSLKMFY 753
Query: 204 FSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRL 263
C +++KLF L LL NLE +VV+ C + EEI+ DEE+ I+ + LP+L
Sbjct: 754 CYGCESMKKLFPLVLLPNFVNLERIVVEDCKKMEEIIGTTDEESSTSNSITE--VILPKL 811
Query: 264 KKLWLSFLPELKSVCSDNAVLICNSLQEIQITPSCPKLKRLSLRLPPLDNGQPSPSPALE 323
+ L L LPELKS+CS A LICNSL++I + C KLKR+ + LP L+N QPSP P+L+
Sbjct: 812 RTLRLFELPELKSICS--AKLICNSLEDIDVE-DCQKLKRMPICLPLLENDQPSPPPSLK 868
Query: 324 VIKIR-KELWES-LEWDQANAKDVLNPYCKF 352
I + +E WE+ +EW+ NAKDVL +F
Sbjct: 869 EITVYPEEWWETVVEWEHPNAKDVLRRCVRF 899
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224128410|ref|XP_002329155.1| BED finger-nbs-lrr resistance protein [Populus trichocarpa] gi|222869824|gb|EEF06955.1| BED finger-nbs-lrr resistance protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 138/420 (32%), Positives = 194/420 (46%), Gaps = 79/420 (18%)
Query: 2 LERVPSLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNL 61
L +PSLAKL L+ LDL YTA++E+P+GMEML NL +L ++ L + PAGILPKL L
Sbjct: 667 LRYIPSLAKLRGLRKLDLRYTALEELPQGMEMLSNLRYLNLFGNSLKEMPAGILPKLSQL 726
Query: 62 YSLRLNWGSETSRETVQEAARSSDRLDTFVGYFSKLDDFNTYVKSSD-GQRSKHFHFQVS 120
L N S + E +R++T F L DF Y+KS + Q + F +
Sbjct: 727 QFLNANRASGIFKTVRVEEVACLNRMETLRYQFCDLVDFKKYLKSPEVRQYLTTYFFTIG 786
Query: 121 TVYNGSAANTRFYSFLRTREA-NKSVCFYGCKICEREGVTIVLPKDVQGLIMRDIEDVTS 179
+ ++ Y + E K V + C+I E+ G + LP+DV + D S
Sbjct: 787 QLGVDREMDSLLY--MTPEEVFYKEVLVHDCQIGEK-GRFLELPEDVSSFSIGRCHDARS 843
Query: 180 LND--------------------------------------------------VFSKEQG 189
L D VF +G
Sbjct: 844 LCDVSPFKHATSLKSLGMWECDGIECLASMSESSTDIFESLESLYLKTLKNFCVFITREG 903
Query: 190 LV-----NAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEI----- 239
+ FSHLK + CP+++ LFSL LL L NLE + V C++ EEI
Sbjct: 904 AAPPSWQSNGTFSHLKKVTIGECPSMKNLFSLDLLPNLTNLEVIEVDDCDQMEEIIAIED 963
Query: 240 ----VEVNDEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAVLICNSLQEIQIT 295
+ V D + ++ +LP LK L LS LPELKS+ + +IC+SLQEI I
Sbjct: 964 EEEGMMVEDSSSSSHYAVT----SLPNLKVLKLSNLPELKSIF--HGEVICDSLQEI-IV 1016
Query: 296 PSCPKLKRLSLRLPPLDNGQPSPSPALEVIKIRKELWESLEWDQANAKDVLNPYCKFEQS 355
+CP LKR+SL NGQ +P ++ KE WES+EW +N+K+ L P C F +S
Sbjct: 1017 VNCPNLKRISLSHRNHANGQ---TPLRKIQAYPKEWWESVEWGNSNSKNALEPLCVFWES 1073
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224144593|ref|XP_002325343.1| predicted protein [Populus trichocarpa] gi|222862218|gb|EEE99724.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 127/381 (33%), Positives = 193/381 (50%), Gaps = 44/381 (11%)
Query: 2 LERVPSLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNL 61
L VPSL +L AL+ LDL T ++ +P+GME L NL +L S ++FP+GILP+L +L
Sbjct: 215 LRDVPSLRELRALKRLDLFKTELENMPQGMECLSNLWYLRFGSNGKMEFPSGILPELSHL 274
Query: 62 YSLRLNWGSETSRETVQEAARSSDRLDTFVGYFSKLDDFNTYVKSSDGQRSKHFHFQVST 121
+ S S + + +L+T +F DF +++S D +S +
Sbjct: 275 QV----FVSSASIKVKGKELGCLRKLETLKCHFEGHSDFVEFLRSRDLTKS----LSIYR 326
Query: 122 VYNGSAANTRFYSFLRTREANKSVCFYGCKICEREGVTIVLPKDVQGLIMRDIEDVTSLN 181
++ G + + T K V I ++ P D+Q L + D T+L
Sbjct: 327 IFVGLLDDEDYSVMWGTSSRRKIVVLSNLSINGDGDFQVMFPNDIQELDIIKCNDATTLC 386
Query: 182 DV-----FSKEQGLVNAAK--------------------------FSHLKALWFSYCPNL 210
D+ F+ + ++N K FS LK +F C ++
Sbjct: 387 DISSVIMFATKLEILNIRKCSNMESLVLSSRFYSAPLPLPSSNCTFSGLKEFYFCNCMSM 446
Query: 211 QKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSF 270
+KL L LL L+NLE LVV+ C + EEI+ DEE LP+LK L L +
Sbjct: 447 KKLLPLVLLPNLKNLEKLVVEECEKMEEIIGPTDEEISSSSSNPITKFILPKLKSLRLKY 506
Query: 271 LPELKSVCSDNAVLICNSLQEIQITPSCPKLKRLSLRLPPLDNGQPSPSPALE-VIKIRK 329
LPELKS+C A +IC+SL+EI++ +C KLKR+ + LP L+NGQPSP +L+ ++ +
Sbjct: 507 LPELKSIC--GAKVICDSLEEIKVD-TCEKLKRIPICLPLLENGQPSPPLSLQNIVAYPE 563
Query: 330 ELWES-LEWDQANAKDVLNPY 349
E W+S +EW+ NAKDVL P+
Sbjct: 564 EWWDSVVEWEHPNAKDVLLPF 584
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224109372|ref|XP_002333267.1| BED finger-nbs-lrr resistance protein [Populus trichocarpa] gi|222835868|gb|EEE74289.1| BED finger-nbs-lrr resistance protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 160 bits (406), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 138/402 (34%), Positives = 201/402 (50%), Gaps = 58/402 (14%)
Query: 2 LERVPSLAKLLALQCLDLEYT-AIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCN 60
L VPSL KL AL+ LDL T A++++P+GME L NL +L + +FP+G+LPKL +
Sbjct: 683 LRHVPSLEKLRALKRLDLSGTWALEKIPQGMECLCNLRYLIMNGCGEKEFPSGLLPKLSH 742
Query: 61 LYSLRLN-W-----GSETSRETVQEAARSSD-----RLDTFVGYFSKLDDFNTYVKSSDG 109
L L W G R+ + + +L++ +F D+ Y+KS D
Sbjct: 743 LQVFVLEEWIPRPTGDYRERQDAPITVKGKEVGCLRKLESLACHFEGCSDYMEYLKSQDE 802
Query: 110 QRS-KHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICEREGVTIVLPKDVQG 168
+S + V + Y R K++ I G ++ PKD+Q
Sbjct: 803 TKSLTTYQILVGPLDKYDYCYCYGYDGCR----RKAIVRGNLSIDRDGGFQVMFPKDIQQ 858
Query: 169 LIMRDIEDVTSLNDVFS-----------------KEQGLVNA--------------AKFS 197
L + + +D TSL D S + LV++ FS
Sbjct: 859 LSIHNNDDATSLCDFLSLIKSVTELEAITIFSCNSMESLVSSSWFRSAPLPSPSYNGIFS 918
Query: 198 HLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIV--EVNDEE--TQKELGI 253
LK + S C +++KLF L LL L LE + V C + EEI+ +DEE +E
Sbjct: 919 SLKKFFCSGCSSMKKLFPLVLLPNLVKLEEITVTKCEKMEEIIGGTRSDEEGVMGEESSS 978
Query: 254 SAIT-ITLPRLKKLWLSFLPELKSVCSDNAVLICNSLQEIQITPSCPKLKRLSLRLPPLD 312
S+IT + L +L L L LPEL+S+CS A LIC+SL+EI + +C KLKR+ + LP L+
Sbjct: 979 SSITDLKLTKLSSLTLIELPELESICS--AKLICDSLKEIAVY-NCKKLKRMPICLPLLE 1035
Query: 313 NGQPSPSPALEVIKIR-KELWES-LEWDQANAKDVLNPYCKF 352
NGQPSP P+L I++ +E WES +EW+ NAKDVL P +F
Sbjct: 1036 NGQPSPPPSLRKIEVYPEEWWESVVEWEHPNAKDVLRPIVQF 1077
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 355 | ||||||
| TAIR|locus:2131689 | 919 | AT4G27220 [Arabidopsis thalian | 0.329 | 0.127 | 0.338 | 7.1e-06 |
| TAIR|locus:2131689 AT4G27220 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 137 (53.3 bits), Expect = 7.1e-06, P = 7.1e-06
Identities = 44/130 (33%), Positives = 73/130 (56%)
Query: 173 DIEDVTSLNDVFSKEQGLVNA---AKFSHLKALWFSYCPNLQKLFSLQLLAA-LQNLEFL 228
++E++ SL++V + G +N + LK L S C L++LFS Q+LA L NL+ +
Sbjct: 769 NLEEL-SLDNVNLESIGELNGFLGMRLQKLKLLQVSGCRQLKRLFSDQILAGTLPNLQEI 827
Query: 229 VVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAVLICNS 288
V SC R EE+ N + ++ LP+L + L +LP+L+S+C+D VL S
Sbjct: 828 KVVSCLRLEELF--NFSSVPVDFCAESL---LPKLTVIKLKYLPQLRSLCNDRVVL--ES 880
Query: 289 LQEIQITPSC 298
L+ +++ SC
Sbjct: 881 LEHLEVE-SC 889
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.133 0.393 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 355 330 0.00089 116 3 11 22 0.39 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1
No. of states in DFA: 615 (65 KB)
Total size of DFA: 235 KB (2127 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 26.93u 0.08s 27.01t Elapsed: 00:00:01
Total cpu time: 26.93u 0.08s 27.01t Elapsed: 00:00:01
Start: Sat May 11 01:56:47 2013 End: Sat May 11 01:56:48 2013
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 355 | |||
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.75 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.74 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.73 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 99.69 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.66 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.66 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.64 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.6 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.56 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.36 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 99.34 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.32 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.3 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.29 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.27 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.24 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.23 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.13 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.08 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.02 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 98.88 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.81 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.73 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.72 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 98.69 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.61 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 98.53 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 98.5 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 98.44 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 98.36 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.18 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 98.16 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.16 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.15 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.08 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.07 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.01 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 97.99 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 97.97 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 97.96 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.9 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 97.86 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 97.77 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 97.71 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 97.67 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.47 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.45 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.32 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.25 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.15 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 97.12 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 97.01 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 97.0 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 96.85 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 96.83 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 96.72 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 96.55 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 96.44 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.32 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 96.19 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 95.85 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 95.85 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 95.72 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 95.49 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 95.25 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 95.23 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 94.89 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 94.76 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 94.71 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 93.82 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 93.82 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 93.66 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 93.66 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 92.31 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 92.1 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 91.13 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 90.87 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 90.43 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 90.39 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 89.7 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 87.16 | |
| smart00364 | 26 | LRR_BAC Leucine-rich repeats, bacterial type. | 80.84 |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3e-18 Score=177.90 Aligned_cols=102 Identities=17% Similarity=0.213 Sum_probs=48.3
Q ss_pred cccccceecCCCcccc-ccCcccccCcccceecccCcccc-cccchhhhcCCCcceeeecccCCccccchhHhhcccccc
Q 036143 10 KLLALQCLDLEYTAIK-EVPEGMEMLENLVHLTIYSKMLI-KFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRL 87 (355)
Q Consensus 10 ~l~~L~~L~L~~~~~~-~lP~~i~~L~~L~~L~l~~~~~~-~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L 87 (355)
.+.+|++|++++|.+. .+|..++++.+|++|++++|.+. .+|..+ +++++|++|++++|.. .+..+. .++++++|
T Consensus 138 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~n~l-~~~~p~-~l~~l~~L 214 (968)
T PLN00113 138 SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL-TNLTSLEFLTLASNQL-VGQIPR-ELGQMKSL 214 (968)
T ss_pred ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhh-hhCcCCCeeeccCCCC-cCcCCh-HHcCcCCc
Confidence 3455555555555444 44555555555555555555433 344444 5555555555554322 112222 45555555
Q ss_pred cceEEEeccCcc-ccccccccccccccc
Q 036143 88 DTFVGYFSKLDD-FNTYVKSSDGQRSKH 114 (355)
Q Consensus 88 ~~L~l~~~~~~~-~~~~~~~l~~L~~L~ 114 (355)
++|++..+.... .+..++.++.|+.|.
T Consensus 215 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 242 (968)
T PLN00113 215 KWIYLGYNNLSGEIPYEIGGLTSLNHLD 242 (968)
T ss_pred cEEECcCCccCCcCChhHhcCCCCCEEE
Confidence 555554444332 223344444444443
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.1e-17 Score=172.87 Aligned_cols=90 Identities=17% Similarity=0.202 Sum_probs=58.8
Q ss_pred CCCCccccccccceecCCCccccccCcccccCcccceecccCc-ccccccchhhhcCCCcceeeecccCCccccchhHhh
Q 036143 3 ERVPSLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSK-MLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAA 81 (355)
Q Consensus 3 ~~lP~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~-~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l 81 (355)
+.+|+-....+|+.|++.++.+..+|.+++.+.+|++|+++++ .+..+|. + +.+++|++|++.+|... ..++..+
T Consensus 602 ~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-l-s~l~~Le~L~L~~c~~L--~~lp~si 677 (1153)
T PLN03210 602 RCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-L-SMATNLETLKLSDCSSL--VELPSSI 677 (1153)
T ss_pred CCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-c-ccCCcccEEEecCCCCc--cccchhh
Confidence 4556222467777777777777777777777777777777776 4566664 4 67777777777766432 2233367
Q ss_pred cccccccceEEEecc
Q 036143 82 RSSDRLDTFVGYFSK 96 (355)
Q Consensus 82 ~~L~~L~~L~l~~~~ 96 (355)
+.+++|+.|++..+.
T Consensus 678 ~~L~~L~~L~L~~c~ 692 (1153)
T PLN03210 678 QYLNKLEDLDMSRCE 692 (1153)
T ss_pred hccCCCCEEeCCCCC
Confidence 777777777776543
|
syringae 6; Provisional |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.5e-18 Score=174.20 Aligned_cols=106 Identities=16% Similarity=0.183 Sum_probs=74.8
Q ss_pred CCC-ccc-cccccceecCCCcccc-ccCcccccCcccceecccCcccc-cccchhhhcCCCcceeeecccCCccccchhH
Q 036143 4 RVP-SLA-KLLALQCLDLEYTAIK-EVPEGMEMLENLVHLTIYSKMLI-KFPAGILPKLCNLYSLRLNWGSETSRETVQE 79 (355)
Q Consensus 4 ~lP-~i~-~l~~L~~L~L~~~~~~-~lP~~i~~L~~L~~L~l~~~~~~-~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~ 79 (355)
.+| .+. .+++||+|++++|++. .+|. +.+.+|++|++++|.+. .+|..+ +.+++|++|++++|.. ....+.
T Consensus 108 ~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~-~~l~~L~~L~L~~n~l-~~~~p~- 182 (968)
T PLN00113 108 PIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDI-GSFSSLKVLDLGGNVL-VGKIPN- 182 (968)
T ss_pred cCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHH-hcCCCCCEEECccCcc-cccCCh-
Confidence 466 444 7888888888888776 4554 56788888888888765 567777 8888888888887543 223333
Q ss_pred hhcccccccceEEEeccCcc-ccccccccccccccc
Q 036143 80 AARSSDRLDTFVGYFSKLDD-FNTYVKSSDGQRSKH 114 (355)
Q Consensus 80 ~l~~L~~L~~L~l~~~~~~~-~~~~~~~l~~L~~L~ 114 (355)
.++++++|++|++..+.... .+..++.++.|+.|.
T Consensus 183 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 183 SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred hhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 78888888888887766543 345566777777666
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.7e-18 Score=170.07 Aligned_cols=310 Identities=17% Similarity=0.152 Sum_probs=196.7
Q ss_pred CCCCC--ccccccccceecCCCc-cccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchh
Q 036143 2 LERVP--SLAKLLALQCLDLEYT-AIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQ 78 (355)
Q Consensus 2 l~~lP--~i~~l~~L~~L~L~~~-~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~ 78 (355)
+..++ .|..++.||+|||++| .+.++|++|+.|.|||||+++++.+..+|.++ ++|..|++|++..+.... .++
T Consensus 559 l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l-~~Lk~L~~Lnl~~~~~l~--~~~ 635 (889)
T KOG4658|consen 559 LLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGL-GNLKKLIYLNLEVTGRLE--SIP 635 (889)
T ss_pred hhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHH-HHHHhhheeccccccccc--ccc
Confidence 34556 4788999999999999 78899999999999999999999999999999 999999999999865432 224
Q ss_pred HhhcccccccceEEEeccCccccccccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCC----cc
Q 036143 79 EAARSSDRLDTFVGYFSKLDDFNTYVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKI----CE 154 (355)
Q Consensus 79 ~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~----~~ 154 (355)
..+..|++||+|.+...........++++..|+.|. ............. ....+..|..+.. .+
T Consensus 636 ~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~-------~ls~~~~s~~~~e-----~l~~~~~L~~~~~~l~~~~ 703 (889)
T KOG4658|consen 636 GILLELQSLRVLRLPRSALSNDKLLLKELENLEHLE-------NLSITISSVLLLE-----DLLGMTRLRSLLQSLSIEG 703 (889)
T ss_pred chhhhcccccEEEeeccccccchhhHHhhhcccchh-------hheeecchhHhHh-----hhhhhHHHHHHhHhhhhcc
Confidence 255569999999998665333223344444454444 1111111110000 0111111111110 00
Q ss_pred CC----CccccCchhHHHH-Hhhcccccccccccccccccccccc-cCCCccEEeeccCCCccccchHHHHhhcCCCCeE
Q 036143 155 RE----GVTIVLPKDVQGL-IMRDIEDVTSLNDVFSKEQGLVNAA-KFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFL 228 (355)
Q Consensus 155 ~~----~~~~~~~~~L~~L-l~~~~~~~~~l~~~~~l~~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L 228 (355)
.. ...+..+.+++.| +.+| ...+...... ...... .|+++..+.+.+|...+.+.|.. ..++|++|
T Consensus 704 ~~~~~~~~~~~~l~~L~~L~i~~~-~~~e~~~~~~----~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~---f~~~L~~l 775 (889)
T KOG4658|consen 704 CSKRTLISSLGSLGNLEELSILDC-GISEIVIEWE----ESLIVLLCFPNLSKVSILNCHMLRDLTWLL---FAPHLTSL 775 (889)
T ss_pred cccceeecccccccCcceEEEEcC-CCchhhcccc----cccchhhhHHHHHHHHhhccccccccchhh---ccCcccEE
Confidence 00 0111334566666 6666 2211110000 000011 26778888888998888888764 45778999
Q ss_pred EEecCCCCceecccCcchhhhhcccccccccCccccee-ecccccccceecCCCceecCCCceEEEEcCCCCccccccCC
Q 036143 229 VVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKL-WLSFLPELKSVCSDNAVLICNSLQEIQITPSCPKLKRLSLR 307 (355)
Q Consensus 229 ~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L-~l~~~~~l~~i~~~~~~l~~~~L~~L~i~~~c~~L~~lp~~ 307 (355)
.+..|...++++.....-.. .......|.++..+ .+.+.+.++++.. ..++++.|+.+.+. .||+++.+|..
T Consensus 776 ~l~~~~~~e~~i~~~k~~~~----l~~~i~~f~~~~~l~~~~~l~~l~~i~~--~~l~~~~l~~~~ve-~~p~l~~~P~~ 848 (889)
T KOG4658|consen 776 SLVSCRLLEDIIPKLKALLE----LKELILPFNKLEGLRMLCSLGGLPQLYW--LPLSFLKLEELIVE-ECPKLGKLPLL 848 (889)
T ss_pred EEecccccccCCCHHHHhhh----cccEEecccccccceeeecCCCCceeEe--cccCccchhheehh-cCcccccCccc
Confidence 99999998888764422211 00124567777777 5778888888877 67778889999999 99999999976
Q ss_pred CCCCCCCCCCCCCCeeEEEe-hhhhhcccccCcccccccc
Q 036143 308 LPPLDNGQPSPSPALEVIKI-RKELWESLEWDQANAKDVL 346 (355)
Q Consensus 308 ~~~l~~~~~~~~~~L~~l~~-~~~~~~~l~~~~~~~~~~~ 346 (355)
...-.. .. .=+.+.. +.+|.+.+.|+++.++.++
T Consensus 849 ~~~~i~----~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~ 883 (889)
T KOG4658|consen 849 STLTIV----GC-EEKLKEYPDGEWLEGVYWEDELTKLRF 883 (889)
T ss_pred ccccee----cc-ccceeecCCccceeeEEehhhhhhhhc
Confidence 532210 00 0112223 5557888999999988877
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.3e-18 Score=159.29 Aligned_cols=272 Identities=20% Similarity=0.228 Sum_probs=167.2
Q ss_pred CCC-ccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhc
Q 036143 4 RVP-SLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAAR 82 (355)
Q Consensus 4 ~lP-~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~ 82 (355)
.|| +|..+..|.+|||+.|++++.|.++.+-+++-.|++++|.++.+|.+++-+|+-|-.||++++.. ..+|..+.
T Consensus 94 GiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrL---e~LPPQ~R 170 (1255)
T KOG0444|consen 94 GIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRL---EMLPPQIR 170 (1255)
T ss_pred CCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchh---hhcCHHHH
Confidence 477 88888888888888888888888888888888888888888888888878888888888887533 33333788
Q ss_pred ccccccceEEEeccCcccc-ccccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCccCCCcccc
Q 036143 83 SSDRLDTFVGYFSKLDDFN-TYVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICEREGVTIV 161 (355)
Q Consensus 83 ~L~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~~~~~~~ 161 (355)
+|.+|++|.++.+....+. +.+-.++.|+.|+ .......-...|..+...+.+..+.++...+...+ ..+-
T Consensus 171 RL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLh-------ms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vP-ecly 242 (1255)
T KOG0444|consen 171 RLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLH-------MSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVP-ECLY 242 (1255)
T ss_pred HHhhhhhhhcCCChhhHHHHhcCccchhhhhhh-------cccccchhhcCCCchhhhhhhhhccccccCCCcch-HHHh
Confidence 8888888888766654443 3444555555555 11111111113333332333333333333222111 0011
Q ss_pred CchhHHHH-HhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCC-CCcee
Q 036143 162 LPKDVQGL-IMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCN-RNEEI 239 (355)
Q Consensus 162 ~~~~L~~L-l~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~-~l~~i 239 (355)
-..+|++| +.+. .++.++- -+ +.-.+|+.|.++.. +++.++.. ...|+.|+.|-+.+.. ..+.+
T Consensus 243 ~l~~LrrLNLS~N--~iteL~~---~~------~~W~~lEtLNlSrN-QLt~LP~a--vcKL~kL~kLy~n~NkL~FeGi 308 (1255)
T KOG0444|consen 243 KLRNLRRLNLSGN--KITELNM---TE------GEWENLETLNLSRN-QLTVLPDA--VCKLTKLTKLYANNNKLTFEGI 308 (1255)
T ss_pred hhhhhheeccCcC--ceeeeec---cH------HHHhhhhhhccccc-hhccchHH--HhhhHHHHHHHhccCcccccCC
Confidence 12244444 4442 2221111 11 23345666666666 45543322 4566666666665433 23344
Q ss_pred cccCcchhhhhcccccccccCcccceeecccccccceecCCCceecCCCceEEEEcCCCCccccccCCCCCCCCCCCCCC
Q 036143 240 VEVNDEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAVLICNSLQEIQITPSCPKLKRLSLRLPPLDNGQPSPS 319 (355)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~~~L~~L~i~~~c~~L~~lp~~~~~l~~~~~~~~ 319 (355)
+. .++.+..|+.+...+. .++-++. |...+++|+.|.+ +|+.|-.+|++|..++
T Consensus 309 PS--------------GIGKL~~Levf~aanN-~LElVPE--glcRC~kL~kL~L--~~NrLiTLPeaIHlL~------- 362 (1255)
T KOG0444|consen 309 PS--------------GIGKLIQLEVFHAANN-KLELVPE--GLCRCVKLQKLKL--DHNRLITLPEAIHLLP------- 362 (1255)
T ss_pred cc--------------chhhhhhhHHHHhhcc-ccccCch--hhhhhHHHHHhcc--cccceeechhhhhhcC-------
Confidence 43 7778888888887764 5666666 6666889999999 7999999999996665
Q ss_pred CCeeEEEe
Q 036143 320 PALEVIKI 327 (355)
Q Consensus 320 ~~L~~l~~ 327 (355)
.|+++++
T Consensus 363 -~l~vLDl 369 (1255)
T KOG0444|consen 363 -DLKVLDL 369 (1255)
T ss_pred -Ccceeec
Confidence 8999888
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.1e-16 Score=163.16 Aligned_cols=265 Identities=19% Similarity=0.229 Sum_probs=168.0
Q ss_pred CCCCC-ccccccccceecCCCc-cccccCcccccCcccceecccCc-ccccccchhhhcCCCcceeeecccCCccccchh
Q 036143 2 LERVP-SLAKLLALQCLDLEYT-AIKEVPEGMEMLENLVHLTIYSK-MLIKFPAGILPKLCNLYSLRLNWGSETSRETVQ 78 (355)
Q Consensus 2 l~~lP-~i~~l~~L~~L~L~~~-~~~~lP~~i~~L~~L~~L~l~~~-~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~ 78 (355)
++.+| .++.+++|++|+|+++ .++.+| .++.+++|++|++++| .+..+|..+ +++++|+.|++++|... ..++
T Consensus 623 l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si-~~L~~L~~L~L~~c~~L--~~Lp 698 (1153)
T PLN03210 623 LEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSI-QYLNKLEDLDMSRCENL--EILP 698 (1153)
T ss_pred ccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhh-hccCCCCEEeCCCCCCc--CccC
Confidence 56788 8899999999999988 677888 5889999999999998 788999998 99999999999988653 3334
Q ss_pred HhhcccccccceEEEeccCcc-ccccccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCccC--
Q 036143 79 EAARSSDRLDTFVGYFSKLDD-FNTYVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICER-- 155 (355)
Q Consensus 79 ~~l~~L~~L~~L~l~~~~~~~-~~~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~-- 155 (355)
.-.++++|++|.+.++.... ++.. ...|+.|. +....+.. .+..+ ...+|..+.+...
T Consensus 699 -~~i~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~-------L~~n~i~~--lP~~~------~l~~L~~L~l~~~~~ 759 (1153)
T PLN03210 699 -TGINLKSLYRLNLSGCSRLKSFPDI---STNISWLD-------LDETAIEE--FPSNL------RLENLDELILCEMKS 759 (1153)
T ss_pred -CcCCCCCCCEEeCCCCCCccccccc---cCCcCeee-------cCCCcccc--ccccc------cccccccccccccch
Confidence 22378999999987664322 2211 22344444 11111111 11111 1112222222110
Q ss_pred ----------CCccccCchhHHHH-HhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCC
Q 036143 156 ----------EGVTIVLPKDVQGL-IMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQN 224 (355)
Q Consensus 156 ----------~~~~~~~~~~L~~L-l~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~ 224 (355)
.......+++|+.| +.+| .....++... +.+++|+.|++++|.+++.++.. .++++
T Consensus 760 ~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n-~~l~~lP~si---------~~L~~L~~L~Ls~C~~L~~LP~~---~~L~s 826 (1153)
T PLN03210 760 EKLWERVQPLTPLMTMLSPSLTRLFLSDI-PSLVELPSSI---------QNLHKLEHLEIENCINLETLPTG---INLES 826 (1153)
T ss_pred hhccccccccchhhhhccccchheeCCCC-CCccccChhh---------hCCCCCCEEECCCCCCcCeeCCC---CCccc
Confidence 01111335678888 8877 5554444321 46888999999999888775432 26888
Q ss_pred CCeEEEecCCCCceecccCcc--hhh----hhcccccccccCcccceeecccccccceecCCCceecCCCceEEEEcCCC
Q 036143 225 LEFLVVQSCNRNEEIVEVNDE--ETQ----KELGISAITITLPRLKKLWLSFLPELKSVCSDNAVLICNSLQEIQITPSC 298 (355)
Q Consensus 225 L~~L~l~~~~~l~~i~~~~~~--~~~----~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~~~L~~L~i~~~c 298 (355)
|+.|++++|..+..++..... ... .-...+..+..+++|+.|.+.+|++++.++. ....+++|+.+.+. +|
T Consensus 827 L~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~--~~~~L~~L~~L~l~-~C 903 (1153)
T PLN03210 827 LESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSL--NISKLKHLETVDFS-DC 903 (1153)
T ss_pred cCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCc--ccccccCCCeeecC-CC
Confidence 999999998887666531100 000 0012333556677788888888877777766 33345677788887 88
Q ss_pred Ccccccc
Q 036143 299 PKLKRLS 305 (355)
Q Consensus 299 ~~L~~lp 305 (355)
.+|..++
T Consensus 904 ~~L~~~~ 910 (1153)
T PLN03210 904 GALTEAS 910 (1153)
T ss_pred ccccccc
Confidence 7777554
|
syringae 6; Provisional |
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2e-18 Score=159.73 Aligned_cols=109 Identities=18% Similarity=0.249 Sum_probs=94.3
Q ss_pred CCC-ccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhc
Q 036143 4 RVP-SLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAAR 82 (355)
Q Consensus 4 ~lP-~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~ 82 (355)
..| ++..++.+++|.|..+.+.++|++++.|++|++|.+.+|.+..+-.++ +.|+.||.++++.++. ...++|.+|.
T Consensus 23 ~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGEL-s~Lp~LRsv~~R~N~L-KnsGiP~diF 100 (1255)
T KOG0444|consen 23 RFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGEL-SDLPRLRSVIVRDNNL-KNSGIPTDIF 100 (1255)
T ss_pred cCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhh-ccchhhHHHhhhcccc-ccCCCCchhc
Confidence 578 888999999999999999999999999999999999999999998888 9999999999998654 4455555899
Q ss_pred ccccccceEEEeccCccccccccccccccccc
Q 036143 83 SSDRLDTFVGYFSKLDDFNTYVKSSDGQRSKH 114 (355)
Q Consensus 83 ~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 114 (355)
.|.-|..|+++.+.....+..+...+++-.|.
T Consensus 101 ~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLN 132 (1255)
T KOG0444|consen 101 RLKDLTILDLSHNQLREVPTNLEYAKNSIVLN 132 (1255)
T ss_pred ccccceeeecchhhhhhcchhhhhhcCcEEEE
Confidence 99999999999888888887777777766666
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.6e-17 Score=147.52 Aligned_cols=254 Identities=17% Similarity=0.157 Sum_probs=131.4
Q ss_pred ccccccccceecCCCccccccCcc-cccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccc
Q 036143 7 SLAKLLALQCLDLEYTAIKEVPEG-MEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSD 85 (355)
Q Consensus 7 ~i~~l~~L~~L~L~~~~~~~lP~~-i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~ 85 (355)
++..+..||.|||+.|.|.++|.. +..=.++++|++++|.++.+-.+-|..+.+|-+|.++.+.. +..... .+.+|+
T Consensus 144 ~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNri-ttLp~r-~Fk~L~ 221 (873)
T KOG4194|consen 144 ELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRI-TTLPQR-SFKRLP 221 (873)
T ss_pred HHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcc-cccCHH-Hhhhcc
Confidence 344567778888888877777654 44556788888888877777666557777777887776432 333333 666677
Q ss_pred cccceEEEeccCcccc-ccccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCccCCCccccCch
Q 036143 86 RLDTFVGYFSKLDDFN-TYVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICEREGVTIVLPK 164 (355)
Q Consensus 86 ~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~~~~~~~~~~ 164 (355)
+|+.|++..+.+.-.. -.+..++.|+.|. +..+++.......+.+ ...++.++|+...+.+...-.+-.++
T Consensus 222 ~L~~LdLnrN~irive~ltFqgL~Sl~nlk-------lqrN~I~kL~DG~Fy~-l~kme~l~L~~N~l~~vn~g~lfgLt 293 (873)
T KOG4194|consen 222 KLESLDLNRNRIRIVEGLTFQGLPSLQNLK-------LQRNDISKLDDGAFYG-LEKMEHLNLETNRLQAVNEGWLFGLT 293 (873)
T ss_pred hhhhhhccccceeeehhhhhcCchhhhhhh-------hhhcCcccccCcceee-ecccceeecccchhhhhhcccccccc
Confidence 7887777666654321 2345555566555 2222222222222211 33344445555444332222122334
Q ss_pred hHHHH-HhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHH-----------------------HHh
Q 036143 165 DVQGL-IMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQ-----------------------LLA 220 (355)
Q Consensus 165 ~L~~L-l~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-----------------------~l~ 220 (355)
.|+.| +.. +.+..+..- .| ..+++|+.|+++.. +++.+...+ .+.
T Consensus 294 ~L~~L~lS~--NaI~rih~d-----~W---sftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~ 362 (873)
T KOG4194|consen 294 SLEQLDLSY--NAIQRIHID-----SW---SFTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFV 362 (873)
T ss_pred hhhhhccch--hhhheeecc-----hh---hhcccceeEecccc-ccccCChhHHHHHHHhhhhcccccchHHHHhhHHH
Confidence 44444 443 223322221 11 34555555555555 333332221 233
Q ss_pred hcCCCCeEEEecCCCCceecccCcchhhhhcccccccccCcccceeecccccccceecCCCceec-CCCceEEEEc
Q 036143 221 ALQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAVLI-CNSLQEIQIT 295 (355)
Q Consensus 221 ~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~-~~~L~~L~i~ 295 (355)
.+++|+.|++.+. .+...+.+ -...+..+|+|++|.+.+. +++.|+. .++. |++||+|++.
T Consensus 363 ~lssL~~LdLr~N-~ls~~IED----------aa~~f~gl~~LrkL~l~gN-qlk~I~k--rAfsgl~~LE~LdL~ 424 (873)
T KOG4194|consen 363 GLSSLHKLDLRSN-ELSWCIED----------AAVAFNGLPSLRKLRLTGN-QLKSIPK--RAFSGLEALEHLDLG 424 (873)
T ss_pred HhhhhhhhcCcCC-eEEEEEec----------chhhhccchhhhheeecCc-eeeecch--hhhccCcccceecCC
Confidence 4555555555432 22222211 1113445677777777665 5666665 5554 5666666664
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.9e-15 Score=139.05 Aligned_cols=297 Identities=19% Similarity=0.182 Sum_probs=176.9
Q ss_pred CCCCCC-ccccccccceecCCCcccccc-CcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchh
Q 036143 1 RLERVP-SLAKLLALQCLDLEYTAIKEV-PEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQ 78 (355)
Q Consensus 1 ~l~~lP-~i~~l~~L~~L~L~~~~~~~l-P~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~ 78 (355)
+|+.|| ......||+.|+|.+|.|..+ .+++..+.-||.||++.|.+..+|..-|.+=.++++|++..+.+ +.....
T Consensus 113 ~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~I-t~l~~~ 191 (873)
T KOG4194|consen 113 ELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRI-TTLETG 191 (873)
T ss_pred hhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccc-cccccc
Confidence 367899 555677799999999999877 55588999999999999999999887657778999999998643 444444
Q ss_pred HhhcccccccceEEEeccCcccc-ccccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCccCCC
Q 036143 79 EAARSSDRLDTFVGYFSKLDDFN-TYVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICEREG 157 (355)
Q Consensus 79 ~~l~~L~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~~~ 157 (355)
.+..+.+|-.|.++.+.....+ ..++++++|+.|.+..| .++++ +... +.....++.+.|....+..-..
T Consensus 192 -~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN--~iriv-----e~lt-FqgL~Sl~nlklqrN~I~kL~D 262 (873)
T KOG4194|consen 192 -HFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRN--RIRIV-----EGLT-FQGLPSLQNLKLQRNDISKLDD 262 (873)
T ss_pred -cccccchheeeecccCcccccCHHHhhhcchhhhhhcccc--ceeee-----hhhh-hcCchhhhhhhhhhcCcccccC
Confidence 7888899999999988888776 55777999988873222 12222 1111 0011122333444444443221
Q ss_pred ccccCchhHHHH-HhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCC
Q 036143 158 VTIVLPKDVQGL-IMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRN 236 (355)
Q Consensus 158 ~~~~~~~~L~~L-l~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l 236 (355)
-.+-.+..++.| +... .+..+.. +|. -.+..|+.|+++.. .+..+.... -...++|+.|++++ +.+
T Consensus 263 G~Fy~l~kme~l~L~~N--~l~~vn~------g~l--fgLt~L~~L~lS~N-aI~rih~d~-WsftqkL~~LdLs~-N~i 329 (873)
T KOG4194|consen 263 GAFYGLEKMEHLNLETN--RLQAVNE------GWL--FGLTSLEQLDLSYN-AIQRIHIDS-WSFTQKLKELDLSS-NRI 329 (873)
T ss_pred cceeeecccceeecccc--hhhhhhc------ccc--cccchhhhhccchh-hhheeecch-hhhcccceeEeccc-ccc
Confidence 112334455555 4442 2222222 221 35677888888887 344333222 23567889999985 334
Q ss_pred ceecccCcchhh---------hhcc--cccccccCcccceeecccccccceecCCCceec---CCCceEEEEcCCCCccc
Q 036143 237 EEIVEVNDEETQ---------KELG--ISAITITLPRLKKLWLSFLPELKSVCSDNAVLI---CNSLQEIQITPSCPKLK 302 (355)
Q Consensus 237 ~~i~~~~~~~~~---------~~~~--~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~---~~~L~~L~i~~~c~~L~ 302 (355)
.++....-.+.. ++.+ -...+..+.+|++|+|+...- +|+.++++.. +++|++|.+. -.+++
T Consensus 330 ~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~l--s~~IEDaa~~f~gl~~LrkL~l~--gNqlk 405 (873)
T KOG4194|consen 330 TRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNEL--SWCIEDAAVAFNGLPSLRKLRLT--GNQLK 405 (873)
T ss_pred ccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeE--EEEEecchhhhccchhhhheeec--Cceee
Confidence 443321100000 0000 001344566788888876532 2333323332 6799999994 46888
Q ss_pred cccCCC-CCCCCCCCCCCCCeeEEEehhhhh
Q 036143 303 RLSLRL-PPLDNGQPSPSPALEVIKIRKELW 332 (355)
Q Consensus 303 ~lp~~~-~~l~~~~~~~~~~L~~l~~~~~~~ 332 (355)
.+|... .. +++|+++++-.+..
T Consensus 406 ~I~krAfsg--------l~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 406 SIPKRAFSG--------LEALEHLDLGDNAI 428 (873)
T ss_pred ecchhhhcc--------CcccceecCCCCcc
Confidence 887422 22 23677776644443
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.8e-14 Score=123.01 Aligned_cols=107 Identities=16% Similarity=0.140 Sum_probs=66.1
Q ss_pred ccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCceecccCcchhhhhcccccccccCcccceeecccccc
Q 036143 194 AKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPE 273 (355)
Q Consensus 194 ~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 273 (355)
..+++|..|.+++. -+.++ |.. .+.+..|+.|+++.. +.+.++. .. ..+...+..+....+
T Consensus 432 ~~l~kLt~L~L~NN-~Ln~L-P~e-~~~lv~Lq~LnlS~N-rFr~lP~--------------~~-y~lq~lEtllas~nq 492 (565)
T KOG0472|consen 432 SQLQKLTFLDLSNN-LLNDL-PEE-MGSLVRLQTLNLSFN-RFRMLPE--------------CL-YELQTLETLLASNNQ 492 (565)
T ss_pred Hhhhcceeeecccc-hhhhc-chh-hhhhhhhheeccccc-ccccchH--------------HH-hhHHHHHHHHhcccc
Confidence 46788888888887 34443 333 567788999999854 5655553 11 222222223333345
Q ss_pred cceecCCCceecCCCceEEEEcCCCCccccccCCCCCCCCCCCCCCCCeeEEEehhh
Q 036143 274 LKSVCSDNAVLICNSLQEIQITPSCPKLKRLSLRLPPLDNGQPSPSPALEVIKIRKE 330 (355)
Q Consensus 274 l~~i~~~~~~l~~~~L~~L~i~~~c~~L~~lp~~~~~l~~~~~~~~~~L~~l~~~~~ 330 (355)
++++..+ +...+.+|.+|++ +...+..+|.++++.+ +|+.+++..+
T Consensus 493 i~~vd~~-~l~nm~nL~tLDL--~nNdlq~IPp~Lgnmt--------nL~hLeL~gN 538 (565)
T KOG0472|consen 493 IGSVDPS-GLKNMRNLTTLDL--QNNDLQQIPPILGNMT--------NLRHLELDGN 538 (565)
T ss_pred ccccChH-Hhhhhhhcceecc--CCCchhhCChhhcccc--------ceeEEEecCC
Confidence 6666553 2333457888888 5677888888887777 8888887443
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.9e-12 Score=127.21 Aligned_cols=270 Identities=22% Similarity=0.264 Sum_probs=156.2
Q ss_pred CCCCC-ccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccC-CccccchhH
Q 036143 2 LERVP-SLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGS-ETSRETVQE 79 (355)
Q Consensus 2 l~~lP-~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~-~~~~~~~~~ 79 (355)
+.++| +|++|.+||||+++++.+..+|.++++|..|.|||+..+.....+.++...|.+||+|.+.... ......+.
T Consensus 584 l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~- 662 (889)
T KOG4658|consen 584 LSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLK- 662 (889)
T ss_pred cCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHH-
Confidence 56899 9999999999999999999999999999999999999985444445554779999999998754 22223333
Q ss_pred hhcccccccceEEEeccCccccccccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCccCCC--
Q 036143 80 AARSSDRLDTFVGYFSKLDDFNTYVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICEREG-- 157 (355)
Q Consensus 80 ~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~~~-- 157 (355)
++.+|++|+.+.....+. .....+..+..|..+.....+ .. .........+.....++.+.+.++.+.....
T Consensus 663 el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l~~---~~--~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~ 736 (889)
T KOG4658|consen 663 ELENLEHLENLSITISSV-LLLEDLLGMTRLRSLLQSLSI---EG--CSKRTLISSLGSLGNLEELSILDCGISEIVIEW 736 (889)
T ss_pred hhhcccchhhheeecchh-HhHhhhhhhHHHHHHhHhhhh---cc--cccceeecccccccCcceEEEEcCCCchhhccc
Confidence 566666666666643332 111222233333322211110 00 0001111222233445556666666643211
Q ss_pred ---ccccC-chhHHHH-HhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEe-
Q 036143 158 ---VTIVL-PKDVQGL-IMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQ- 231 (355)
Q Consensus 158 ---~~~~~-~~~L~~L-l~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~- 231 (355)
..... ++.+.++ +.+| .....+... ...++|+.|.+..|..++++.+. ...+..+..+.+.
T Consensus 737 ~~~~~~~~~f~~l~~~~~~~~-~~~r~l~~~----------~f~~~L~~l~l~~~~~~e~~i~~--~k~~~~l~~~i~~f 803 (889)
T KOG4658|consen 737 EESLIVLLCFPNLSKVSILNC-HMLRDLTWL----------LFAPHLTSLSLVSCRLLEDIIPK--LKALLELKELILPF 803 (889)
T ss_pred ccccchhhhHHHHHHHHhhcc-ccccccchh----------hccCcccEEEEecccccccCCCH--HHHhhhcccEEecc
Confidence 11111 4456666 7777 333322211 35689999999999988887654 3444444443332
Q ss_pred -cCCCCceecccCcchhhhhcccccccccCcccceeecccccccceecCCC--ceecCCCceEEEEcCCC-CccccccCC
Q 036143 232 -SCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDN--AVLICNSLQEIQITPSC-PKLKRLSLR 307 (355)
Q Consensus 232 -~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~--~~l~~~~L~~L~i~~~c-~~L~~lp~~ 307 (355)
.....+.+ . ..+.|+++..+.+.... +.++.... ....+|.+.++.+. +| ..+..+|.+
T Consensus 804 ~~~~~l~~~-~--------------~l~~l~~i~~~~l~~~~-l~~~~ve~~p~l~~~P~~~~~~i~-~~~~~~~~~~~~ 866 (889)
T KOG4658|consen 804 NKLEGLRML-C--------------SLGGLPQLYWLPLSFLK-LEELIVEECPKLGKLPLLSTLTIV-GCEEKLKEYPDG 866 (889)
T ss_pred cccccceee-e--------------cCCCCceeEecccCccc-hhheehhcCcccccCcccccccee-ccccceeecCCc
Confidence 11222211 1 44556665555554432 44444422 11224678889998 87 889999876
Q ss_pred C
Q 036143 308 L 308 (355)
Q Consensus 308 ~ 308 (355)
.
T Consensus 867 ~ 867 (889)
T KOG4658|consen 867 E 867 (889)
T ss_pred c
Confidence 3
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.3e-14 Score=110.73 Aligned_cols=109 Identities=19% Similarity=0.206 Sum_probs=56.4
Q ss_pred CCC-ccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhc
Q 036143 4 RVP-SLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAAR 82 (355)
Q Consensus 4 ~lP-~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~ 82 (355)
.+| .|.++.+|++|++.+|+++++|.+++.+++|+.|+++-|.+..+|.++ |.++.|+.||+.+++. ....+|..+.
T Consensus 47 ~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgf-gs~p~levldltynnl-~e~~lpgnff 124 (264)
T KOG0617|consen 47 VVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGF-GSFPALEVLDLTYNNL-NENSLPGNFF 124 (264)
T ss_pred ecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCcccc-CCCchhhhhhcccccc-ccccCCcchh
Confidence 344 555555555555555555555555555555555555555555555555 5555555555555432 2222222444
Q ss_pred ccccccceEEEeccCccccccccccccccccc
Q 036143 83 SSDRLDTFVGYFSKLDDFNTYVKSSDGQRSKH 114 (355)
Q Consensus 83 ~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 114 (355)
-|+.|+.|++..+.+.-.+..++.+++|+.|.
T Consensus 125 ~m~tlralyl~dndfe~lp~dvg~lt~lqil~ 156 (264)
T KOG0617|consen 125 YMTTLRALYLGDNDFEILPPDVGKLTNLQILS 156 (264)
T ss_pred HHHHHHHHHhcCCCcccCChhhhhhcceeEEe
Confidence 44555555554444444444445544444444
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.4e-14 Score=123.13 Aligned_cols=229 Identities=19% Similarity=0.166 Sum_probs=110.1
Q ss_pred CCC-ccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhc
Q 036143 4 RVP-SLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAAR 82 (355)
Q Consensus 4 ~lP-~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~ 82 (355)
.+| +++.+..+..|+.+.|++.++|++++.+.+|+.|+.++|.+.++|.++ +.+..|..++..+++. ...++.++
T Consensus 82 ~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i-~~~~~l~dl~~~~N~i---~slp~~~~ 157 (565)
T KOG0472|consen 82 QLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSI-GRLLDLEDLDATNNQI---SSLPEDMV 157 (565)
T ss_pred hCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchH-HHHhhhhhhhcccccc---ccCchHHH
Confidence 344 555555555555555555555555555555555555555555555554 5555555554444322 22222455
Q ss_pred ccccccceEEEeccCccccccccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCccCCCccccC
Q 036143 83 SSDRLDTFVGYFSKLDDFNTYVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICEREGVTIVL 162 (355)
Q Consensus 83 ~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~~~~~~~~ 162 (355)
.+.+|..+.+.++.....++..-.++.|+.++...|. ++ ..|..++....+..+.|+...+...+.| ..
T Consensus 158 ~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~-------L~--tlP~~lg~l~~L~~LyL~~Nki~~lPef--~g 226 (565)
T KOG0472|consen 158 NLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNL-------LE--TLPPELGGLESLELLYLRRNKIRFLPEF--PG 226 (565)
T ss_pred HHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhh-------hh--cCChhhcchhhhHHHHhhhcccccCCCC--Cc
Confidence 5555555555444444433322224444444311110 00 0112222222222333333333333222 34
Q ss_pred chhHHHH-HhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCceecc
Q 036143 163 PKDVQGL-IMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVE 241 (355)
Q Consensus 163 ~~~L~~L-l~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~~ 241 (355)
+..|.++ ... ..++.++.-. ...++++..|++.+. +++..+. . +.-+++|++|++++ +.+..++.
T Consensus 227 cs~L~Elh~g~--N~i~~lpae~--------~~~L~~l~vLDLRdN-klke~Pd-e-~clLrsL~rLDlSN-N~is~Lp~ 292 (565)
T KOG0472|consen 227 CSLLKELHVGE--NQIEMLPAEH--------LKHLNSLLVLDLRDN-KLKEVPD-E-ICLLRSLERLDLSN-NDISSLPY 292 (565)
T ss_pred cHHHHHHHhcc--cHHHhhHHHH--------hcccccceeeecccc-ccccCch-H-HHHhhhhhhhcccC-CccccCCc
Confidence 4455555 333 1222222211 135677777888877 5666432 2 56678888888885 45555655
Q ss_pred cCcchhhhhcccccccccCcccceeeccccccccee
Q 036143 242 VNDEETQKELGISAITITLPRLKKLWLSFLPELKSV 277 (355)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i 277 (355)
.++++ .|+.|.+.|.| ++.|
T Consensus 293 --------------sLgnl-hL~~L~leGNP-lrTi 312 (565)
T KOG0472|consen 293 --------------SLGNL-HLKFLALEGNP-LRTI 312 (565)
T ss_pred --------------ccccc-eeeehhhcCCc-hHHH
Confidence 77788 88888888875 4443
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=6e-12 Score=124.69 Aligned_cols=124 Identities=23% Similarity=0.236 Sum_probs=78.5
Q ss_pred CchhHHHH-HhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCceec
Q 036143 162 LPKDVQGL-IMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIV 240 (355)
Q Consensus 162 ~~~~L~~L-l~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~ 240 (355)
.+++|+.| +.++ .++.++. ..+++|+.|.+++| .++.+.. . + .++|+.|+++++. +..++
T Consensus 302 lp~sL~~L~Ls~N--~Lt~LP~-----------~l~~sL~~L~Ls~N-~Lt~LP~-~-l--~~sL~~L~Ls~N~-L~~LP 362 (754)
T PRK15370 302 LPSGITHLNVQSN--SLTALPE-----------TLPPGLKTLEAGEN-ALTSLPA-S-L--PPELQVLDVSKNQ-ITVLP 362 (754)
T ss_pred chhhHHHHHhcCC--ccccCCc-----------cccccceeccccCC-ccccCCh-h-h--cCcccEEECCCCC-CCcCC
Confidence 45578888 7775 3333322 23468899999888 4555332 1 2 2688999998764 45554
Q ss_pred ccCcchhhhhcccccccccCcccceeecccccccceecCCCceecCCCceEEEEcCCCCccccccCCCCCCCCCCCCCCC
Q 036143 241 EVNDEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAVLICNSLQEIQITPSCPKLKRLSLRLPPLDNGQPSPSP 320 (355)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~~~L~~L~i~~~c~~L~~lp~~~~~l~~~~~~~~~ 320 (355)
. . ..++|++|++++| .+..++. ... ++|+.|++. + .++..+|..+..+. ...|
T Consensus 363 ~--------------~--lp~~L~~LdLs~N-~Lt~LP~--~l~--~sL~~LdLs-~-N~L~~LP~sl~~~~----~~~~ 415 (754)
T PRK15370 363 E--------------T--LPPTITTLDVSRN-ALTNLPE--NLP--AALQIMQAS-R-NNLVRLPESLPHFR----GEGP 415 (754)
T ss_pred h--------------h--hcCCcCEEECCCC-cCCCCCH--hHH--HHHHHHhhc-c-CCcccCchhHHHHh----hcCC
Confidence 3 2 2368999999987 4666654 222 378888886 5 57788887765543 3345
Q ss_pred CeeEEEehhhh
Q 036143 321 ALEVIKIRKEL 331 (355)
Q Consensus 321 ~L~~l~~~~~~ 331 (355)
++..+++..+-
T Consensus 416 ~l~~L~L~~Np 426 (754)
T PRK15370 416 QPTRIIVEYNP 426 (754)
T ss_pred CccEEEeeCCC
Confidence 77788774433
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.2e-13 Score=117.91 Aligned_cols=112 Identities=22% Similarity=0.338 Sum_probs=92.9
Q ss_pred CCCCCC--ccccccccceecCCCcccccc-CcccccCcccceecccC-cccccccchhhhcCCCcceeeecccCCccccc
Q 036143 1 RLERVP--SLAKLLALQCLDLEYTAIKEV-PEGMEMLENLVHLTIYS-KMLIKFPAGILPKLCNLYSLRLNWGSETSRET 76 (355)
Q Consensus 1 ~l~~lP--~i~~l~~L~~L~L~~~~~~~l-P~~i~~L~~L~~L~l~~-~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~ 76 (355)
+|+.|| +|+.+++||.|||+.|+|+.| |+.+..+..|..|-+.+ |+|+.+|.+.|++|..|+-|.+.-+.. ....
T Consensus 78 ~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i-~Cir 156 (498)
T KOG4237|consen 78 QISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHI-NCIR 156 (498)
T ss_pred CcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhh-cchh
Confidence 478899 999999999999999999988 88999999998887777 799999999999999999999886533 3333
Q ss_pred hhHhhcccccccceEEEeccCccccc-cccccccccccc
Q 036143 77 VQEAARSSDRLDTFVGYFSKLDDFNT-YVKSSDGQRSKH 114 (355)
Q Consensus 77 ~~~~l~~L~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~ 114 (355)
.. .++.|++|..|.++.+.+..... .+..+..++.++
T Consensus 157 ~~-al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlh 194 (498)
T KOG4237|consen 157 QD-ALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLH 194 (498)
T ss_pred HH-HHHHhhhcchhcccchhhhhhccccccchhccchHh
Confidence 34 89999999999998777665554 466667777666
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.2e-13 Score=128.19 Aligned_cols=244 Identities=19% Similarity=0.217 Sum_probs=131.5
Q ss_pred cccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccccccceEEEeccCccccccccccccccccc
Q 036143 35 ENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLDTFVGYFSKLDDFNTYVKSSDGQRSKH 114 (355)
Q Consensus 35 ~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 114 (355)
.+|+|++++++.+..+| ++++.+.+|+.+++..+.. ..++..+..+++|+.+.+..+.....+......+.|+.|.
T Consensus 241 ~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l---~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLd 316 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSNLP-EWIGACANLEALNANHNRL---VALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLD 316 (1081)
T ss_pred ccceeeecchhhhhcch-HHHHhcccceEecccchhH---HhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeee
Confidence 45566666666566666 3336666666666555432 3333355555555555555555444444444455555554
Q ss_pred cccccceeEeecCCCccccceeccc-CCccEEEEeccCCccCCCccccCchhHHHH-Hhhcccccccccccccccccccc
Q 036143 115 FHFQVSTVYNGSAANTRFYSFLRTR-EANKSVCFYGCKICEREGVTIVLPKDVQGL-IMRDIEDVTSLNDVFSKEQGLVN 192 (355)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~L~~l~~~~~~~~~~~~~~~L~~L-l~~~~~~~~~l~~~~~l~~~~~~ 192 (355)
+..+.+..... ..+... ..+..++.+.+.+......+-.....|+.| +.+.+..... +|.+
T Consensus 317 -------L~~N~L~~lp~-~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c---~p~l------ 379 (1081)
T KOG0618|consen 317 -------LQSNNLPSLPD-NFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSC---FPVL------ 379 (1081)
T ss_pred -------ehhccccccch-HHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccc---hhhh------
Confidence 22222222110 000000 001111111111111111222345577777 6664111111 2222
Q ss_pred cccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCceecccCcchhhhhcccccccccCcccceeeccccc
Q 036143 193 AAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLP 272 (355)
Q Consensus 193 ~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 272 (355)
..+.+|+.|+++.+ ++.. ++...+.+++.|+.|.+++ +.++.++. .+..+++|++|.....
T Consensus 380 -~~~~hLKVLhLsyN-rL~~-fpas~~~kle~LeeL~LSG-NkL~~Lp~--------------tva~~~~L~tL~ahsN- 440 (1081)
T KOG0618|consen 380 -VNFKHLKVLHLSYN-RLNS-FPASKLRKLEELEELNLSG-NKLTTLPD--------------TVANLGRLHTLRAHSN- 440 (1081)
T ss_pred -ccccceeeeeeccc-cccc-CCHHHHhchHHhHHHhccc-chhhhhhH--------------HHHhhhhhHHHhhcCC-
Confidence 47889999999998 6665 4555588999999999997 66777775 6678888888877554
Q ss_pred ccceecCCCceecCCCceEEEEcCCCCccccccCCCCCCCCCCCCCC-CCeeEEEehhhh
Q 036143 273 ELKSVCSDNAVLICNSLQEIQITPSCPKLKRLSLRLPPLDNGQPSPS-PALEVIKIRKEL 331 (355)
Q Consensus 273 ~l~~i~~~~~~l~~~~L~~L~i~~~c~~L~~lp~~~~~l~~~~~~~~-~~L~~l~~~~~~ 331 (355)
.+..++. ...++.|+.+++ +|.+|..+-... ..+ |+|+.+++..+-
T Consensus 441 ~l~~fPe---~~~l~qL~~lDl--S~N~L~~~~l~~--------~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 441 QLLSFPE---LAQLPQLKVLDL--SCNNLSEVTLPE--------ALPSPNLKYLDLSGNT 487 (1081)
T ss_pred ceeechh---hhhcCcceEEec--ccchhhhhhhhh--------hCCCcccceeeccCCc
Confidence 3444442 223468889988 788887642111 223 688888884433
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.9e-11 Score=119.50 Aligned_cols=84 Identities=17% Similarity=0.176 Sum_probs=49.8
Q ss_pred CCCCC-ccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHh
Q 036143 2 LERVP-SLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEA 80 (355)
Q Consensus 2 l~~lP-~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~ 80 (355)
|+.+| .+. .+|+.|++.+|+++.+|.. +++|++|++++|.++.+|.. ..+|++|+++.+.. ..++ .
T Consensus 213 LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l----p~sL~~L~Ls~N~L---~~Lp-~ 279 (788)
T PRK15387 213 LTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL----PPGLLELSIFSNPL---THLP-A 279 (788)
T ss_pred CCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc----ccccceeeccCCch---hhhh-h
Confidence 45566 554 3677777777777777752 46677777777777777643 24666777766432 2222 1
Q ss_pred hcccccccceEEEeccCccc
Q 036143 81 ARSSDRLDTFVGYFSKLDDF 100 (355)
Q Consensus 81 l~~L~~L~~L~l~~~~~~~~ 100 (355)
-.++|+.|++..+.....
T Consensus 280 --lp~~L~~L~Ls~N~Lt~L 297 (788)
T PRK15387 280 --LPSGLCKLWIFGNQLTSL 297 (788)
T ss_pred --chhhcCEEECcCCccccc
Confidence 124566666655554443
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.1e-12 Score=121.92 Aligned_cols=102 Identities=17% Similarity=0.248 Sum_probs=79.6
Q ss_pred ccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhccccc
Q 036143 7 SLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDR 86 (355)
Q Consensus 7 ~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 86 (355)
.+.+..+|+.||+++|.+..+|..|+.+.+|+.|+++.|.+...|.++ +++.+|+++.+..+.. ...|.++..+++
T Consensus 40 ~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~-~~~~~l~~lnL~~n~l---~~lP~~~~~lkn 115 (1081)
T KOG0618|consen 40 FVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSC-SNMRNLQYLNLKNNRL---QSLPASISELKN 115 (1081)
T ss_pred HhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhh-hhhhcchhheeccchh---hcCchhHHhhhc
Confidence 455566788999999988899988999999999999999888999888 8999999999886433 445558888999
Q ss_pred ccceEEEeccCccccccccccccccc
Q 036143 87 LDTFVGYFSKLDDFNTYVKSSDGQRS 112 (355)
Q Consensus 87 L~~L~l~~~~~~~~~~~~~~l~~L~~ 112 (355)
|+.|+++++.+...+.-+..++....
T Consensus 116 l~~LdlS~N~f~~~Pl~i~~lt~~~~ 141 (1081)
T KOG0618|consen 116 LQYLDLSFNHFGPIPLVIEVLTAEEE 141 (1081)
T ss_pred ccccccchhccCCCchhHHhhhHHHH
Confidence 99999888877665554544444333
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.3e-11 Score=97.47 Aligned_cols=109 Identities=18% Similarity=0.241 Sum_probs=90.9
Q ss_pred CCCCCccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhh
Q 036143 2 LERVPSLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAA 81 (355)
Q Consensus 2 l~~lP~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l 81 (355)
++++|.+.++.+...|-|+.|.++.+|..|..+.+|+.|++.+|+++++|.++ +.|+.|++|++.-+.. ...|.++
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~i-ssl~klr~lnvgmnrl---~~lprgf 98 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSI-SSLPKLRILNVGMNRL---NILPRGF 98 (264)
T ss_pred HhhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhh-hhchhhhheecchhhh---hcCcccc
Confidence 34567777888999999999999999999999999999999999999999999 9999999999986432 3334499
Q ss_pred cccccccceEEEeccCcc--ccccccccccccccc
Q 036143 82 RSSDRLDTFVGYFSKLDD--FNTYVKSSDGQRSKH 114 (355)
Q Consensus 82 ~~L~~L~~L~l~~~~~~~--~~~~~~~l~~L~~L~ 114 (355)
|.++.|+.|++.+++... .+..+..++.|+.|.
T Consensus 99 gs~p~levldltynnl~e~~lpgnff~m~tlraly 133 (264)
T KOG0617|consen 99 GSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALY 133 (264)
T ss_pred CCCchhhhhhccccccccccCCcchhHHHHHHHHH
Confidence 999999999999887644 445566667777766
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.2e-09 Score=108.27 Aligned_cols=223 Identities=18% Similarity=0.171 Sum_probs=132.5
Q ss_pred CCCCCCccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHh
Q 036143 1 RLERVPSLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEA 80 (355)
Q Consensus 1 ~l~~lP~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~ 80 (355)
+|+.+|.. +.+|++|++++|+++.+|.. ..+|++|++++|.+..+|... .+|+.|++.+|.. ..++ .
T Consensus 233 ~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~Lp~lp----~~L~~L~Ls~N~L---t~LP-~ 299 (788)
T PRK15387 233 NLTSLPAL--PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHLPALP----SGLCKLWIFGNQL---TSLP-V 299 (788)
T ss_pred cCCCCCCC--CCCCcEEEecCCccCcccCc---ccccceeeccCCchhhhhhch----hhcCEEECcCCcc---cccc-c
Confidence 35667743 57899999999999999864 468899999999999888633 5677888887644 2333 2
Q ss_pred hcccccccceEEEeccCccccccccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCccCCCccc
Q 036143 81 ARSSDRLDTFVGYFSKLDDFNTYVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICEREGVTI 160 (355)
Q Consensus 81 l~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~~~~~~ 160 (355)
.+++|++|+++.|.+...+... ..|+.|. +..+.+... +. + ...++.++++++.+...+
T Consensus 300 --~p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~-------Ls~N~L~~L--P~-l--p~~Lq~LdLS~N~Ls~LP---- 358 (788)
T PRK15387 300 --LPPGLQELSVSDNQLASLPALP---SELCKLW-------AYNNQLTSL--PT-L--PSGLQELSVSDNQLASLP---- 358 (788)
T ss_pred --cccccceeECCCCccccCCCCc---ccccccc-------cccCccccc--cc-c--ccccceEecCCCccCCCC----
Confidence 2468999999877766543322 2344444 112222211 11 0 123455666666655432
Q ss_pred cCchhHHHH-HhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCcee
Q 036143 161 VLPKDVQGL-IMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEI 239 (355)
Q Consensus 161 ~~~~~L~~L-l~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i 239 (355)
..+.+++.| +.++ .+..++. ...+|+.|+++++ +++.+.. ..++|+.|+++++. +..+
T Consensus 359 ~lp~~L~~L~Ls~N--~L~~LP~------------l~~~L~~LdLs~N-~Lt~LP~-----l~s~L~~LdLS~N~-LssI 417 (788)
T PRK15387 359 TLPSELYKLWAYNN--RLTSLPA------------LPSGLKELIVSGN-RLTSLPV-----LPSELKELMVSGNR-LTSL 417 (788)
T ss_pred CCCcccceehhhcc--ccccCcc------------cccccceEEecCC-cccCCCC-----cccCCCEEEccCCc-CCCC
Confidence 234566666 6653 3333322 2346788888777 4554332 13567888887643 5455
Q ss_pred cccCcchhhhhcccccccccCcccceeecccccccceecCCCceecCCCceEEEEcCCCC
Q 036143 240 VEVNDEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAVLICNSLQEIQITPSCP 299 (355)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~~~L~~L~i~~~c~ 299 (355)
+. .+.+|+.|++.++ +++.++. ....+++|+.|++. +++
T Consensus 418 P~-----------------l~~~L~~L~Ls~N-qLt~LP~--sl~~L~~L~~LdLs-~N~ 456 (788)
T PRK15387 418 PM-----------------LPSGLLSLSVYRN-QLTRLPE--SLIHLSSETTVNLE-GNP 456 (788)
T ss_pred Cc-----------------chhhhhhhhhccC-cccccCh--HHhhccCCCeEECC-CCC
Confidence 42 2346677777665 4566654 23335577777776 554
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.6e-09 Score=107.70 Aligned_cols=230 Identities=17% Similarity=0.159 Sum_probs=134.1
Q ss_pred CCCCC-ccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHh
Q 036143 2 LERVP-SLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEA 80 (355)
Q Consensus 2 l~~lP-~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~ 80 (355)
++.+| .+. .+|+.|++++|.++.+|..+. .+|++|++++|.++.+|..+ . .+|+.|++++|.. ..++..
T Consensus 190 LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l-~--~~L~~L~Ls~N~L---~~LP~~ 259 (754)
T PRK15370 190 LTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATL-P--DTIQEMELSINRI---TELPER 259 (754)
T ss_pred cCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhh-h--ccccEEECcCCcc---CcCChh
Confidence 56778 564 589999999999999998775 48999999999999999866 4 4799999998754 233324
Q ss_pred hcccccccceEEEeccCccccccccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCccCCCccc
Q 036143 81 ARSSDRLDTFVGYFSKLDDFNTYVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICEREGVTI 160 (355)
Q Consensus 81 l~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~~~~~~ 160 (355)
+. ++|+.|+++.+....++..+. ..|+.|.. ..+.+... +..+. ..+..+.+.++.+...+ .
T Consensus 260 l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~L-------s~N~Lt~L--P~~lp--~sL~~L~Ls~N~Lt~LP---~ 321 (754)
T PRK15370 260 LP--SALQSLDLFHNKISCLPENLP--EELRYLSV-------YDNSIRTL--PAHLP--SGITHLNVQSNSLTALP---E 321 (754)
T ss_pred Hh--CCCCEEECcCCccCccccccC--CCCcEEEC-------CCCccccC--cccch--hhHHHHHhcCCccccCC---c
Confidence 43 579999998777665554332 34555551 11112111 11111 11223334444433211 1
Q ss_pred cCchhHHHH-HhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCcee
Q 036143 161 VLPKDVQGL-IMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEI 239 (355)
Q Consensus 161 ~~~~~L~~L-l~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i 239 (355)
..+++|+.| +.++ .++.++. ...++|+.|++++| +++.+. .. + .++|+.|++++| .+..+
T Consensus 322 ~l~~sL~~L~Ls~N--~Lt~LP~-----------~l~~sL~~L~Ls~N-~L~~LP-~~-l--p~~L~~LdLs~N-~Lt~L 382 (754)
T PRK15370 322 TLPPGLKTLEAGEN--ALTSLPA-----------SLPPELQVLDVSKN-QITVLP-ET-L--PPTITTLDVSRN-ALTNL 382 (754)
T ss_pred cccccceeccccCC--ccccCCh-----------hhcCcccEEECCCC-CCCcCC-hh-h--cCCcCEEECCCC-cCCCC
Confidence 234577777 7665 2333222 22367888888888 455432 11 2 257888888875 34455
Q ss_pred cccCcchhhhhcccccccccCcccceeecccccccceecCCCce--ecCCCceEEEEc
Q 036143 240 VEVNDEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAV--LICNSLQEIQIT 295 (355)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~--l~~~~L~~L~i~ 295 (355)
+. .+ .+.|+.|++.++ ++..++..... ..++.+..+.+.
T Consensus 383 P~--------------~l--~~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~ 423 (754)
T PRK15370 383 PE--------------NL--PAALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVE 423 (754)
T ss_pred CH--------------hH--HHHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEee
Confidence 43 11 135777777665 45555441111 113466666665
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.3e-10 Score=95.79 Aligned_cols=183 Identities=20% Similarity=0.111 Sum_probs=123.2
Q ss_pred ccceecCCCcccc--ccCcccccCcccceecccCccccc-ccchhhhcCCCcceeeecccCCccccchhHhhcccccccc
Q 036143 13 ALQCLDLEYTAIK--EVPEGMEMLENLVHLTIYSKMLIK-FPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLDT 89 (355)
Q Consensus 13 ~L~~L~L~~~~~~--~lP~~i~~L~~L~~L~l~~~~~~~-lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~ 89 (355)
.|++|||+...++ .+-.-+..|.+|+.|.+.|+.+.+ +-..+ .+-.+|+.|+++.|+.++...+..-+.+++.|++
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~i-AkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTI-AKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHH-hccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 4889999988665 565556888999999999886654 44445 8888999999998877777666667888888888
Q ss_pred eEEEeccCcccc--ccccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCccCCCccccCchhHH
Q 036143 90 FVGYFSKLDDFN--TYVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICEREGVTIVLPKDVQ 167 (355)
Q Consensus 90 L~l~~~~~~~~~--~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~~~~~~~~~~~L~ 167 (355)
|+++|+....-. ..++. .-+.|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~h-------------------------------------------------------ise~l~ 289 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAH-------------------------------------------------------ISETLT 289 (419)
T ss_pred cCchHhhccchhhhHHHhh-------------------------------------------------------hchhhh
Confidence 888877653211 00111 011122
Q ss_pred HH-HhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCc-eecccCcc
Q 036143 168 GL-IMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNE-EIVEVNDE 245 (355)
Q Consensus 168 ~L-l~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~-~i~~~~~~ 245 (355)
+| +.|+ --.-...++..++ ..+|+|.+|++++|--++. ..+..+-.++.|++|+++.|..+. +.+.
T Consensus 290 ~LNlsG~-rrnl~~sh~~tL~------~rcp~l~~LDLSD~v~l~~-~~~~~~~kf~~L~~lSlsRCY~i~p~~~~---- 357 (419)
T KOG2120|consen 290 QLNLSGY-RRNLQKSHLSTLV------RRCPNLVHLDLSDSVMLKN-DCFQEFFKFNYLQHLSLSRCYDIIPETLL---- 357 (419)
T ss_pred hhhhhhh-HhhhhhhHHHHHH------HhCCceeeeccccccccCc-hHHHHHHhcchheeeehhhhcCCChHHee----
Confidence 22 2222 1000011122222 4678999999999988887 455557789999999999998752 2222
Q ss_pred hhhhhcccccccccCcccceeecccccc
Q 036143 246 ETQKELGISAITITLPRLKKLWLSFLPE 273 (355)
Q Consensus 246 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 273 (355)
.+...|+|.+|++.+|..
T Consensus 358 ----------~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 358 ----------ELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred ----------eeccCcceEEEEeccccC
Confidence 677899999999998854
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.1e-09 Score=84.97 Aligned_cols=107 Identities=21% Similarity=0.288 Sum_probs=29.7
Q ss_pred CCCCCccccccccceecCCCccccccCcccc-cCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHh
Q 036143 2 LERVPSLAKLLALQCLDLEYTAIKEVPEGME-MLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEA 80 (355)
Q Consensus 2 l~~lP~i~~l~~L~~L~L~~~~~~~lP~~i~-~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~ 80 (355)
|+++|.+.+...++.|+|++|.|+.+. .++ .+.+|+.|++++|.++.++ ++ ..+++|++|+++++.. ..+...
T Consensus 9 i~~~~~~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l-~~L~~L~~L~L~~N~I---~~i~~~ 82 (175)
T PF14580_consen 9 IEQIAQYNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GL-PGLPRLKTLDLSNNRI---SSISEG 82 (175)
T ss_dssp ----------------------------S--TT-TT--EEE-TTS--S--T-T-----TT--EEE--SS------S-CHH
T ss_pred ccccccccccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-Cc-cChhhhhhcccCCCCC---Cccccc
Confidence 456666677777888888888887773 565 5788888888888888875 45 7888888888887644 223213
Q ss_pred h-cccccccceEEEeccCcccc--ccccccccccccc
Q 036143 81 A-RSSDRLDTFVGYFSKLDDFN--TYVKSSDGQRSKH 114 (355)
Q Consensus 81 l-~~L~~L~~L~l~~~~~~~~~--~~~~~l~~L~~L~ 114 (355)
+ ..+++|++|++..+.+.++. ..++.++.|+.|.
T Consensus 83 l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~ 119 (175)
T PF14580_consen 83 LDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLS 119 (175)
T ss_dssp HHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE
T ss_pred hHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceee
Confidence 4 35788888888766665432 2344455555554
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.72 E-value=9.7e-09 Score=68.87 Aligned_cols=59 Identities=29% Similarity=0.403 Sum_probs=53.1
Q ss_pred cccceecCCCccccccCc-ccccCcccceecccCcccccccchhhhcCCCcceeeecccC
Q 036143 12 LALQCLDLEYTAIKEVPE-GMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGS 70 (355)
Q Consensus 12 ~~L~~L~L~~~~~~~lP~-~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~ 70 (355)
++|++|++++|.++.+|. .+..+++|++|++++|.+..+|.+.|..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 478999999999999986 46889999999999999999998877999999999998763
|
... |
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.1e-09 Score=95.06 Aligned_cols=105 Identities=23% Similarity=0.198 Sum_probs=70.2
Q ss_pred ccccccccceecCCCccc-----cccCcccccCcccceecccCccccc-------ccchhhhcCCCcceeeecccCCccc
Q 036143 7 SLAKLLALQCLDLEYTAI-----KEVPEGMEMLENLVHLTIYSKMLIK-------FPAGILPKLCNLYSLRLNWGSETSR 74 (355)
Q Consensus 7 ~i~~l~~L~~L~L~~~~~-----~~lP~~i~~L~~L~~L~l~~~~~~~-------lP~~i~~~L~~L~~L~l~~~~~~~~ 74 (355)
-+..+.+|++|++++|.+ ..+++.+...++|++|+++++.+.. ++..+ .++++|+.|+++++... .
T Consensus 18 ~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~-~ 95 (319)
T cd00116 18 LLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGL-TKGCGLQELDLSDNALG-P 95 (319)
T ss_pred HHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHH-HhcCceeEEEccCCCCC-h
Confidence 344567799999999987 3467777788889999999886553 23344 78889999999886542 1
Q ss_pred cchhHhhccccc---ccceEEEeccCcc-----cccccccc-ccccccc
Q 036143 75 ETVQEAARSSDR---LDTFVGYFSKLDD-----FNTYVKSS-DGQRSKH 114 (355)
Q Consensus 75 ~~~~~~l~~L~~---L~~L~l~~~~~~~-----~~~~~~~l-~~L~~L~ 114 (355)
.... .+..+.+ |++|++..+...+ ....+... ..++.|.
T Consensus 96 ~~~~-~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~ 143 (319)
T cd00116 96 DGCG-VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLV 143 (319)
T ss_pred hHHH-HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEE
Confidence 2223 5555555 9999998776542 11223344 5556555
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.7e-08 Score=82.36 Aligned_cols=108 Identities=18% Similarity=0.171 Sum_probs=48.6
Q ss_pred CCccc-cccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcc
Q 036143 5 VPSLA-KLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARS 83 (355)
Q Consensus 5 lP~i~-~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~ 83 (355)
|..++ .+.+|++|++++|.++.++ .+..+.+|++|++++|.+..++.++...+++|++|++.++....-..+. .+..
T Consensus 34 Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~-~L~~ 111 (175)
T PF14580_consen 34 IENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELE-PLSS 111 (175)
T ss_dssp --S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCG-GGGG
T ss_pred ccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhH-HHHc
Confidence 33444 4778889999999888885 6788899999999999888887665346889999999887654445555 7888
Q ss_pred cccccceEEEeccCcccc----ccccccccccccc
Q 036143 84 SDRLDTFVGYFSKLDDFN----TYVKSSDGQRSKH 114 (355)
Q Consensus 84 L~~L~~L~l~~~~~~~~~----~~~~~l~~L~~L~ 114 (355)
+++|+.|.+.++...+.. ..+..++.|+.|+
T Consensus 112 l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 112 LPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp -TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred CCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 888888888766554321 1244566666666
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=98.53 E-value=2e-08 Score=91.18 Aligned_cols=219 Identities=14% Similarity=0.089 Sum_probs=123.7
Q ss_pred ccccccccceecCCCccccc-------cCcccccCcccceecccCccccc-ccchhhhcCCC---cceeeecccCCcccc
Q 036143 7 SLAKLLALQCLDLEYTAIKE-------VPEGMEMLENLVHLTIYSKMLIK-FPAGILPKLCN---LYSLRLNWGSETSRE 75 (355)
Q Consensus 7 ~i~~l~~L~~L~L~~~~~~~-------lP~~i~~L~~L~~L~l~~~~~~~-lP~~i~~~L~~---L~~L~l~~~~~~~~~ 75 (355)
.+...++|++|+++++.+.. ++..+..+.+|++|++++|.+.. .+..+ ..+.+ |++|++++|... ..
T Consensus 46 ~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-~~l~~~~~L~~L~ls~~~~~-~~ 123 (319)
T cd00116 46 ALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL-ESLLRSSSLQELKLNNNGLG-DR 123 (319)
T ss_pred HHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH-HHHhccCcccEEEeeCCccc-hH
Confidence 45567779999998886552 34566778899999999997764 33334 66655 999999986542 12
Q ss_pred chh---Hhhccc-ccccceEEEeccCcc-----ccccccccccccccccccccceeEeecCCCccc---cceecccCCcc
Q 036143 76 TVQ---EAARSS-DRLDTFVGYFSKLDD-----FNTYVKSSDGQRSKHFHFQVSTVYNGSAANTRF---YSFLRTREANK 143 (355)
Q Consensus 76 ~~~---~~l~~L-~~L~~L~l~~~~~~~-----~~~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~ 143 (355)
.++ ..+..+ ++|++|++..+.... +...+..+..++.|. +....+.+... ...+.....++
T Consensus 124 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~-------l~~n~l~~~~~~~l~~~l~~~~~L~ 196 (319)
T cd00116 124 GLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELN-------LANNGIGDAGIRALAEGLKANCNLE 196 (319)
T ss_pred HHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEE-------CcCCCCchHHHHHHHHHHHhCCCCC
Confidence 222 156667 899999998777652 222344445566666 22222222111 11112223455
Q ss_pred EEEEeccCCccCCCccccCchhHHHHHhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhh--
Q 036143 144 SVCFYGCKICEREGVTIVLPKDVQGLIMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAA-- 221 (355)
Q Consensus 144 ~~~L~~l~~~~~~~~~~~~~~~L~~Ll~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~-- 221 (355)
.++++++.+.... ...+ .... ..+++|++|++++| .+++.........
T Consensus 197 ~L~L~~n~i~~~~---------~~~l-----------~~~~---------~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~ 246 (319)
T cd00116 197 VLDLNNNGLTDEG---------ASAL-----------AETL---------ASLKSLEVLNLGDN-NLTDAGAAALASALL 246 (319)
T ss_pred EEeccCCccChHH---------HHHH-----------HHHh---------cccCCCCEEecCCC-cCchHHHHHHHHHHh
Confidence 6666666544211 1111 0000 34578888888887 4554333222233
Q ss_pred --cCCCCeEEEecCCCCceecccCcchhhhhcccccccccCcccceeeccccccc
Q 036143 222 --LQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPEL 274 (355)
Q Consensus 222 --L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 274 (355)
.+.|++|++.+|.....-. .+.......+++|++++++++..-
T Consensus 247 ~~~~~L~~L~l~~n~i~~~~~----------~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 247 SPNISLLTLSLSCNDITDDGA----------KDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred ccCCCceEEEccCCCCCcHHH----------HHHHHHHhcCCCccEEECCCCCCc
Confidence 3688888888765321000 001114445678888888876543
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.50 E-value=6.4e-09 Score=92.43 Aligned_cols=269 Identities=13% Similarity=0.102 Sum_probs=139.1
Q ss_pred cceecCCCccccccCcc-cccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccccccceEE
Q 036143 14 LQCLDLEYTAIKEVPEG-MEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLDTFVG 92 (355)
Q Consensus 14 L~~L~L~~~~~~~lP~~-i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L~l 92 (355)
-..++|..|+|+.||+. |+.+.+||.||+++|.|+.|...-|..|.+|-.|.+..++......-. .++.|..|+.|.+
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~-~F~gL~slqrLll 147 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKG-AFGGLSSLQRLLL 147 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhh-HhhhHHHHHHHhc
Confidence 34567777888888655 577888888888888888775554488888777766653333333333 6777888888777
Q ss_pred EeccCcccc-ccccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCccCCCccccCchhHHHH--
Q 036143 93 YFSKLDDFN-TYVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICEREGVTIVLPKDVQGL-- 169 (355)
Q Consensus 93 ~~~~~~~~~-~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~~~~~~~~~~~L~~L-- 169 (355)
.-+...... ..+..++.+..|. ++...+..... .++..+..++.++...+.-...=..+++...
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLs-------lyDn~~q~i~~------~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a 214 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLS-------LYDNKIQSICK------GTFQGLAAIKTLHLAQNPFICDCNLPWLADDLA 214 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhc-------ccchhhhhhcc------ccccchhccchHhhhcCccccccccchhhhHHh
Confidence 544444433 3355666665555 22222221111 1111111111111111100000000011100
Q ss_pred ---Hhhcccccccccccccccc----cccccccCCCccEE--ee-ccCCCccccchHHHHhhcCCCCeEEEecCCCCcee
Q 036143 170 ---IMRDIEDVTSLNDVFSKEQ----GLVNAAKFSHLKAL--WF-SYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEI 239 (355)
Q Consensus 170 ---l~~~~~~~~~l~~~~~l~~----~~~~~~~~~~L~~L--~l-~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i 239 (355)
++- .+.+...+. .+.. ........-.++.+ .+ +.| ....+.|...+..|++|+.|++++ +.+..|
T Consensus 215 ~~~iet--sgarc~~p~-rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d-~~d~~cP~~cf~~L~~L~~lnlsn-N~i~~i 289 (498)
T KOG4237|consen 215 MNPIET--SGARCVSPY-RLYYKRINQEDARKFLCSLESLPSRLSSED-FPDSICPAKCFKKLPNLRKLNLSN-NKITRI 289 (498)
T ss_pred hchhhc--ccceecchH-HHHHHHhcccchhhhhhhHHhHHHhhcccc-CcCCcChHHHHhhcccceEeccCC-Cccchh
Confidence 000 000000000 0000 00000000111111 12 223 344455667788999999999986 445444
Q ss_pred cccCcchhhhhcccccccccCcccceeecccccccceecCCCceec-CCCceEEEEcCCCCccccc-cCCCCCCCCCCCC
Q 036143 240 VEVNDEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAVLI-CNSLQEIQITPSCPKLKRL-SLRLPPLDNGQPS 317 (355)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~-~~~L~~L~i~~~c~~L~~l-p~~~~~l~~~~~~ 317 (355)
-. ..+.....+++|.+.+. +++.+.. +++. ++.|++|.++ + .++..+ |..+..+.
T Consensus 290 ~~-------------~aFe~~a~l~eL~L~~N-~l~~v~~--~~f~~ls~L~tL~L~-~-N~it~~~~~aF~~~~----- 346 (498)
T KOG4237|consen 290 ED-------------GAFEGAAELQELYLTRN-KLEFVSS--GMFQGLSGLKTLSLY-D-NQITTVAPGAFQTLF----- 346 (498)
T ss_pred hh-------------hhhcchhhhhhhhcCcc-hHHHHHH--Hhhhccccceeeeec-C-CeeEEEecccccccc-----
Confidence 32 15567788999999876 5777766 5544 6799999996 4 556555 55556655
Q ss_pred CCCCeeEEEe
Q 036143 318 PSPALEVIKI 327 (355)
Q Consensus 318 ~~~~L~~l~~ 327 (355)
+|..|.+
T Consensus 347 ---~l~~l~l 353 (498)
T KOG4237|consen 347 ---SLSTLNL 353 (498)
T ss_pred ---eeeeeeh
Confidence 7777777
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.1e-07 Score=58.71 Aligned_cols=40 Identities=25% Similarity=0.372 Sum_probs=31.2
Q ss_pred cccceecCCCccccccCcccccCcccceecccCccccccc
Q 036143 12 LALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFP 51 (355)
Q Consensus 12 ~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP 51 (355)
++|++|++++|+++.+|..+++|++|++|++++|.++++|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 4688888888888888877888888888888888877665
|
... |
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.36 E-value=4.9e-08 Score=90.72 Aligned_cols=100 Identities=22% Similarity=0.291 Sum_probs=75.8
Q ss_pred CCCCC-ccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHh
Q 036143 2 LERVP-SLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEA 80 (355)
Q Consensus 2 l~~lP-~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~ 80 (355)
++.+| .++++..|.+|||+.|++..+|..++.|+ |+.|-+++|+++.+|.++ +.+..|.+||.+.|.. ..++..
T Consensus 110 ~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~i-g~~~tl~~ld~s~nei---~slpsq 184 (722)
T KOG0532|consen 110 IRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEI-GLLPTLAHLDVSKNEI---QSLPSQ 184 (722)
T ss_pred ceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCccc-ccchhHHHhhhhhhhh---hhchHH
Confidence 56788 88889999999998888888888888885 888888888888888888 8888888888887654 333336
Q ss_pred hcccccccceEEEeccCccccccccc
Q 036143 81 ARSSDRLDTFVGYFSKLDDFNTYVKS 106 (355)
Q Consensus 81 l~~L~~L~~L~l~~~~~~~~~~~~~~ 106 (355)
++.+.+|+.|.+..+....+++++..
T Consensus 185 l~~l~slr~l~vrRn~l~~lp~El~~ 210 (722)
T KOG0532|consen 185 LGYLTSLRDLNVRRNHLEDLPEELCS 210 (722)
T ss_pred hhhHHHHHHHHHhhhhhhhCCHHHhC
Confidence 77777777666665655555555543
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.8e-06 Score=83.95 Aligned_cols=84 Identities=14% Similarity=0.225 Sum_probs=64.3
Q ss_pred ccceecCCCcccc-ccCcccccCcccceecccCcccc-cccchhhhcCCCcceeeecccCCccccchhHhhcccccccce
Q 036143 13 ALQCLDLEYTAIK-EVPEGMEMLENLVHLTIYSKMLI-KFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLDTF 90 (355)
Q Consensus 13 ~L~~L~L~~~~~~-~lP~~i~~L~~L~~L~l~~~~~~-~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L 90 (355)
.++.|+|++|.+. .+|..++.+.+|++|++++|.+. .+|..+ +.+++|+.|++++|.. .+..+. .+++|++|++|
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~-~~l~~L~~LdLs~N~l-sg~iP~-~l~~L~~L~~L 495 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSL-GSITSLEVLDLSYNSF-NGSIPE-SLGQLTSLRIL 495 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHH-hCCCCCCEEECCCCCC-CCCCch-HHhcCCCCCEE
Confidence 4677888888776 77888888888888888888776 677777 8888888888887643 333334 78888888888
Q ss_pred EEEeccCcc
Q 036143 91 VGYFSKLDD 99 (355)
Q Consensus 91 ~l~~~~~~~ 99 (355)
++..+...+
T Consensus 496 ~Ls~N~l~g 504 (623)
T PLN03150 496 NLNGNSLSG 504 (623)
T ss_pred ECcCCcccc
Confidence 887776553
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.16 E-value=2e-07 Score=83.76 Aligned_cols=275 Identities=17% Similarity=0.132 Sum_probs=151.5
Q ss_pred ccceecCCCc-ccc--ccCcccccCcccceecccCc-cccccc-chhhhcCCCcceeeecccCCccccchhHhhcccccc
Q 036143 13 ALQCLDLEYT-AIK--EVPEGMEMLENLVHLTIYSK-MLIKFP-AGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRL 87 (355)
Q Consensus 13 ~L~~L~L~~~-~~~--~lP~~i~~L~~L~~L~l~~~-~~~~lP-~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L 87 (355)
.|+.|.++|+ .+. .+-....+++++++|++.+| .++.-. .++-....+|++|++-.|...+...+..-...+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 5788888888 333 34444467888999988888 333211 112256788888888887666666666455568889
Q ss_pred cceEEEeccCcc---ccccccccccccccccccccceeEeecCCCccccc--ee---c-ccCCccEEEEeccCCccCCC-
Q 036143 88 DTFVGYFSKLDD---FNTYVKSSDGQRSKHFHFQVSTVYNGSAANTRFYS--FL---R-TREANKSVCFYGCKICEREG- 157 (355)
Q Consensus 88 ~~L~l~~~~~~~---~~~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~--~l---~-~~~~~~~~~L~~l~~~~~~~- 157 (355)
.+++++|+.... ..........++.+. ..||.... .+ . ........++..|..-.+..
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~------------~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~ 286 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLS------------LKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDL 286 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhh------------hcccccccHHHHHHHhccChHhhccchhhhccccchHH
Confidence 999888765321 111222333333332 11222110 00 0 00011122233332211111
Q ss_pred ccc-cCchhHHHH-HhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCC
Q 036143 158 VTI-VLPKDVQGL-IMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNR 235 (355)
Q Consensus 158 ~~~-~~~~~L~~L-l~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~ 235 (355)
+.+ ..+..++.+ ..+| .++ ++.. .|......++|+.|.+..|.++++......-.+.+.|+.+++.+|..
T Consensus 287 ~~i~~~c~~lq~l~~s~~-t~~---~d~~----l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~ 358 (483)
T KOG4341|consen 287 WLIACGCHALQVLCYSSC-TDI---TDEV----LWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGL 358 (483)
T ss_pred HHHhhhhhHhhhhcccCC-CCC---chHH----HHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccce
Confidence 111 224456666 6666 332 2211 22222467889999999998877754444345678888888887765
Q ss_pred CceecccCcchhhhhcccccccccCcccceeeccccccccee--cC-CCceecCCCceEEEEcCCCCccccccCCCCCCC
Q 036143 236 NEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPELKSV--CS-DNAVLICNSLQEIQITPSCPKLKRLSLRLPPLD 312 (355)
Q Consensus 236 l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i--~~-~~~~l~~~~L~~L~i~~~c~~L~~lp~~~~~l~ 312 (355)
..+-. +..-..++|.|+.|.++.|.....- .. ..+......|+.+.++ +||...+-- ++++
T Consensus 359 ~~d~t------------L~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~-n~p~i~d~~--Le~l- 422 (483)
T KOG4341|consen 359 ITDGT------------LASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELD-NCPLITDAT--LEHL- 422 (483)
T ss_pred ehhhh------------HhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeec-CCCCchHHH--HHHH-
Confidence 43321 1114457889999999988655432 11 1123335678888899 998876532 1222
Q ss_pred CCCCCCCCCeeEEEe
Q 036143 313 NGQPSPSPALEVIKI 327 (355)
Q Consensus 313 ~~~~~~~~~L~~l~~ 327 (355)
...++|+.|++
T Consensus 423 ----~~c~~Leri~l 433 (483)
T KOG4341|consen 423 ----SICRNLERIEL 433 (483)
T ss_pred ----hhCcccceeee
Confidence 12347888776
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.4e-06 Score=58.23 Aligned_cols=60 Identities=20% Similarity=0.145 Sum_probs=50.3
Q ss_pred cccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccccccceEEEecc
Q 036143 35 ENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLDTFVGYFSK 96 (355)
Q Consensus 35 ~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 96 (355)
++|++|++++|.+..+|.+.|..+++|++|+++++.. ...... .+..+++|++|++.++.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l-~~i~~~-~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNL-TSIPPD-AFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSE-SEEETT-TTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCcc-CccCHH-HHcCCCCCCEEeCcCCc
Confidence 4799999999999999998889999999999997654 344444 78999999999997553
|
... |
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.15 E-value=6.7e-07 Score=80.83 Aligned_cols=208 Identities=15% Similarity=0.120 Sum_probs=98.6
Q ss_pred cccccceecCCCccccccCc--ccccCcccceecccCcccccc--cchhhhcCCCcceeeecccCCccccchhHhhcccc
Q 036143 10 KLLALQCLDLEYTAIKEVPE--GMEMLENLVHLTIYSKMLIKF--PAGILPKLCNLYSLRLNWGSETSRETVQEAARSSD 85 (355)
Q Consensus 10 ~l~~L~~L~L~~~~~~~lP~--~i~~L~~L~~L~l~~~~~~~l--P~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~ 85 (355)
+++.||...|.++.+...+. -...|++.+.||+++|-+... -..++..|++|+.|+++.+.......-. .-..++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~-~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSN-TTLLLS 197 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcccc-chhhhh
Confidence 46677777777776665553 456677777777777644432 1223466777777777764322111111 222455
Q ss_pred cccceEEEeccCcc--ccccccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCccCC-CccccC
Q 036143 86 RLDTFVGYFSKLDD--FNTYVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICERE-GVTIVL 162 (355)
Q Consensus 86 ~L~~L~l~~~~~~~--~~~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~~-~~~~~~ 162 (355)
+|+.|.+..|+... ...-+...+.+..|.+..|- .+....... .....++.++|++..+-..+ ...+..
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~------~~~~~~~~~--~i~~~L~~LdLs~N~li~~~~~~~~~~ 269 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANE------IILIKATST--KILQTLQELDLSNNNLIDFDQGYKVGT 269 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccc------ccceecchh--hhhhHHhhccccCCccccccccccccc
Confidence 66666666565531 11223344555555521110 000000000 01223344444444332211 111233
Q ss_pred chhHHHH-HhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEe
Q 036143 163 PKDVQGL-IMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQ 231 (355)
Q Consensus 163 ~~~L~~L-l~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~ 231 (355)
++.|..| ++.+ ++.++..++. + ..--...|++|++|.+..+ +++++.....+..+++|+.|.+.
T Consensus 270 l~~L~~Lnls~t--gi~si~~~d~-~-s~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l~~l~nlk~l~~~ 334 (505)
T KOG3207|consen 270 LPGLNQLNLSST--GIASIAEPDV-E-SLDKTHTFPKLEYLNISEN-NIRDWRSLNHLRTLENLKHLRIT 334 (505)
T ss_pred ccchhhhhcccc--CcchhcCCCc-c-chhhhcccccceeeecccC-ccccccccchhhccchhhhhhcc
Confidence 4556655 5553 3333322111 0 0001146888888888877 44444444445556666766654
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.08 E-value=3.5e-06 Score=79.00 Aligned_cols=104 Identities=20% Similarity=0.295 Sum_probs=81.8
Q ss_pred ccccccccceecCCCccccccCcccccCc-ccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccc
Q 036143 7 SLAKLLALQCLDLEYTAIKEVPEGMEMLE-NLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSD 85 (355)
Q Consensus 7 ~i~~l~~L~~L~L~~~~~~~lP~~i~~L~-~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~ 85 (355)
.+..+..++.|++.++.+.++|...+.+. +|+.|++++|.+..+|..+ +.+++|+.|++.++.. ..++...+.++
T Consensus 111 ~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~-~~l~~L~~L~l~~N~l---~~l~~~~~~~~ 186 (394)
T COG4886 111 ELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPL-RNLPNLKNLDLSFNDL---SDLPKLLSNLS 186 (394)
T ss_pred hhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhh-hccccccccccCCchh---hhhhhhhhhhh
Confidence 55566788999999999999998888885 9999999999999998887 9999999999998755 44442445888
Q ss_pred cccceEEEeccCccccccccccccccccc
Q 036143 86 RLDTFVGYFSKLDDFNTYVKSSDGQRSKH 114 (355)
Q Consensus 86 ~L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 114 (355)
+|+.|.+..+.....+..++....|..+.
T Consensus 187 ~L~~L~ls~N~i~~l~~~~~~~~~L~~l~ 215 (394)
T COG4886 187 NLNNLDLSGNKISDLPPEIELLSALEELD 215 (394)
T ss_pred hhhheeccCCccccCchhhhhhhhhhhhh
Confidence 99999998887777665554555566655
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.07 E-value=4.4e-07 Score=81.99 Aligned_cols=76 Identities=14% Similarity=0.069 Sum_probs=53.0
Q ss_pred ccCcccccCcccceecccCcccccccc-hhhhcCCCcceeeecccCCccccchhHhhcccccccceEEEeccCcccc
Q 036143 26 EVPEGMEMLENLVHLTIYSKMLIKFPA-GILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLDTFVGYFSKLDDFN 101 (355)
Q Consensus 26 ~lP~~i~~L~~L~~L~l~~~~~~~lP~-~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 101 (355)
++-+-=.++.+|+...++++.+...+. +....+++++.||++.+-...-..+-.-+..|++|+.|+++.+....+.
T Consensus 112 ki~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~ 188 (505)
T KOG3207|consen 112 KIAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFI 188 (505)
T ss_pred HHHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCc
Confidence 333334678999999999998887774 3348899999999997533222333325667889999998877665443
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.01 E-value=5.8e-06 Score=77.51 Aligned_cols=109 Identities=18% Similarity=0.215 Sum_probs=85.2
Q ss_pred CCCCC-cccccc-ccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhH
Q 036143 2 LERVP-SLAKLL-ALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQE 79 (355)
Q Consensus 2 l~~lP-~i~~l~-~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~ 79 (355)
+.++| ....+. +|+.|++++|.+..+|..++.+++|+.|++++|.+..+|... +.+++|+.|+++++.. ..++.
T Consensus 128 i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~-~~~~~L~~L~ls~N~i---~~l~~ 203 (394)
T COG4886 128 ITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLL-SNLSNLNNLDLSGNKI---SDLPP 203 (394)
T ss_pred cccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhh-hhhhhhhheeccCCcc---ccCch
Confidence 56788 666664 999999999999999999999999999999999999999987 7999999999998654 45553
Q ss_pred hhcccccccceEEEeccCccccccccccccccccc
Q 036143 80 AARSSDRLDTFVGYFSKLDDFNTYVKSSDGQRSKH 114 (355)
Q Consensus 80 ~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 114 (355)
.+..+..|+++.+..+........+..+..+..+.
T Consensus 204 ~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~ 238 (394)
T COG4886 204 EIELLSALEELDLSNNSIIELLSSLSNLKNLSGLE 238 (394)
T ss_pred hhhhhhhhhhhhhcCCcceecchhhhhcccccccc
Confidence 55677779999997664433333444444444443
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.99 E-value=2.4e-07 Score=86.22 Aligned_cols=109 Identities=19% Similarity=0.234 Sum_probs=93.5
Q ss_pred CCCCCC-ccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhH
Q 036143 1 RLERVP-SLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQE 79 (355)
Q Consensus 1 ~l~~lP-~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~ 79 (355)
++.++| .++.+..|+.+.|+.|.+..+|..++++..|.|||++.|.+..+|..+ ..--|+.|-++++.. ...+.
T Consensus 86 R~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~l--C~lpLkvli~sNNkl---~~lp~ 160 (722)
T KOG0532|consen 86 RFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGL--CDLPLKVLIVSNNKL---TSLPE 160 (722)
T ss_pred ccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhh--hcCcceeEEEecCcc---ccCCc
Confidence 356789 999999999999999999999999999999999999999999999998 444588888887544 44455
Q ss_pred hhcccccccceEEEeccCccccccccccccccccc
Q 036143 80 AARSSDRLDTFVGYFSKLDDFNTYVKSSDGQRSKH 114 (355)
Q Consensus 80 ~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 114 (355)
+++-+..|.+|+++.|.....+..++.+..|+.|.
T Consensus 161 ~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~ 195 (722)
T KOG0532|consen 161 EIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLN 195 (722)
T ss_pred ccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHH
Confidence 89989999999999888888888888888887776
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=8.2e-06 Score=80.68 Aligned_cols=89 Identities=22% Similarity=0.256 Sum_probs=63.3
Q ss_pred CCC-ccccccccceecCCCcccc-ccCcccccCcccceecccCcccc-cccchhhhcCCCcceeeecccCCccccchhHh
Q 036143 4 RVP-SLAKLLALQCLDLEYTAIK-EVPEGMEMLENLVHLTIYSKMLI-KFPAGILPKLCNLYSLRLNWGSETSRETVQEA 80 (355)
Q Consensus 4 ~lP-~i~~l~~L~~L~L~~~~~~-~lP~~i~~L~~L~~L~l~~~~~~-~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~ 80 (355)
.+| +++++++|++|+|++|.+. .+|..++.+.+|++|++++|.+. .+|..+ ++|++|++|++++|.. .+..+. .
T Consensus 433 ~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l-~~L~~L~~L~Ls~N~l-~g~iP~-~ 509 (623)
T PLN03150 433 FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL-GQLTSLRILNLNGNSL-SGRVPA-A 509 (623)
T ss_pred cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHH-hcCCCCCEEECcCCcc-cccCCh-H
Confidence 466 7888888888888888776 77888888888888888888776 577777 8888888888887543 333333 5
Q ss_pred hccc-ccccceEEEec
Q 036143 81 ARSS-DRLDTFVGYFS 95 (355)
Q Consensus 81 l~~L-~~L~~L~l~~~ 95 (355)
++.+ .++..+.+..+
T Consensus 510 l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 510 LGGRLLHRASFNFTDN 525 (623)
T ss_pred HhhccccCceEEecCC
Confidence 5543 34555555444
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.2e-06 Score=75.59 Aligned_cols=63 Identities=32% Similarity=0.294 Sum_probs=44.7
Q ss_pred ccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCceecccCcchhhhhcccccccccCcccceeecccccc
Q 036143 194 AKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPE 273 (355)
Q Consensus 194 ~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 273 (355)
..+.|.+.|.++++ .++. .+.++.|.+|+.|++.++ +++++-... .++.+|+|+++.+.+.|-
T Consensus 349 ~KLGNIKtL~La~N-~iE~---LSGL~KLYSLvnLDl~~N-~Ie~ldeV~------------~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 349 LKLGNIKTLKLAQN-KIET---LSGLRKLYSLVNLDLSSN-QIEELDEVN------------HIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hhhcCEeeeehhhh-hHhh---hhhhHhhhhheecccccc-chhhHHHhc------------ccccccHHHHHhhcCCCc
Confidence 35678888888887 3443 344678889999999864 333332111 788999999999998864
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.90 E-value=1.3e-05 Score=49.43 Aligned_cols=36 Identities=25% Similarity=0.373 Sum_probs=30.9
Q ss_pred cccceecccCcccccccchhhhcCCCcceeeecccCC
Q 036143 35 ENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSE 71 (355)
Q Consensus 35 ~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~ 71 (355)
++|++|++++|.++.+|.++ ++|++|++|+++++..
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l-~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPEL-SNLPNLETLNLSNNPI 36 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHG-TTCTTSSEEEETSSCC
T ss_pred CcceEEEccCCCCcccCchH-hCCCCCCEEEecCCCC
Confidence 47999999999999999988 9999999999998754
|
... |
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.86 E-value=1.8e-06 Score=74.68 Aligned_cols=102 Identities=19% Similarity=0.157 Sum_probs=70.9
Q ss_pred ccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhccccc
Q 036143 7 SLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDR 86 (355)
Q Consensus 7 ~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 86 (355)
++.-+..+|+|+++.|.+..+- .+..|.+|+.||+++|.+.++-.-= .+|-|.++|.+..+.. ..+. ++++|-+
T Consensus 302 SvKL~Pkir~L~lS~N~i~~v~-nLa~L~~L~~LDLS~N~Ls~~~Gwh-~KLGNIKtL~La~N~i---E~LS-GL~KLYS 375 (490)
T KOG1259|consen 302 SVKLAPKLRRLILSQNRIRTVQ-NLAELPQLQLLDLSGNLLAECVGWH-LKLGNIKTLKLAQNKI---ETLS-GLRKLYS 375 (490)
T ss_pred hhhhccceeEEeccccceeeeh-hhhhcccceEeecccchhHhhhhhH-hhhcCEeeeehhhhhH---hhhh-hhHhhhh
Confidence 5555778899999999888774 4888889999999998777664422 5667777777776433 4455 6666777
Q ss_pred ccceEEEeccCcccc--ccccccccccccc
Q 036143 87 LDTFVGYFSKLDDFN--TYVKSSDGQRSKH 114 (355)
Q Consensus 87 L~~L~l~~~~~~~~~--~~~~~l~~L~~L~ 114 (355)
|..|++..+++.... ..+++++.|+.+.
T Consensus 376 LvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~ 405 (490)
T KOG1259|consen 376 LVNLDLSSNQIEELDEVNHIGNLPCLETLR 405 (490)
T ss_pred heeccccccchhhHHHhcccccccHHHHHh
Confidence 777777666665432 4566777666665
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.77 E-value=2.1e-06 Score=74.18 Aligned_cols=88 Identities=16% Similarity=0.015 Sum_probs=58.9
Q ss_pred CCCccEEeeccCCCccccchHHH-HhhcCCCCeEEEecCCCCceecccCcchhhhhcccccccccCcccceeeccccccc
Q 036143 196 FSHLKALWFSYCPNLQKLFSLQL-LAALQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPEL 274 (355)
Q Consensus 196 ~~~L~~L~l~~~~~l~~~~~~~~-l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 274 (355)
-++|+.|.+++|.+.-....... ...+|+|.+|++++|..+..-.. ..+..|+.|++|.++.|..+
T Consensus 285 se~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~-------------~~~~kf~~L~~lSlsRCY~i 351 (419)
T KOG2120|consen 285 SETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCF-------------QEFFKFNYLQHLSLSRCYDI 351 (419)
T ss_pred chhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHH-------------HHHHhcchheeeehhhhcCC
Confidence 35788899999864322222222 35689999999999988765432 15668999999999999754
Q ss_pred ce-ecCCCceecCCCceEEEEcCCCC
Q 036143 275 KS-VCSDNAVLICNSLQEIQITPSCP 299 (355)
Q Consensus 275 ~~-i~~~~~~l~~~~L~~L~i~~~c~ 299 (355)
.. .....+. .|+|.+|++. +|-
T Consensus 352 ~p~~~~~l~s--~psl~yLdv~-g~v 374 (419)
T KOG2120|consen 352 IPETLLELNS--KPSLVYLDVF-GCV 374 (419)
T ss_pred ChHHeeeecc--CcceEEEEec-ccc
Confidence 21 1110022 4699999998 773
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.71 E-value=6.1e-07 Score=80.67 Aligned_cols=86 Identities=19% Similarity=0.176 Sum_probs=61.8
Q ss_pred ccccccceecCCCc-cccc-cCccc-ccCcccceecccCc-ccccccch-hhhcCCCcceeeecccCCccccchhHhhcc
Q 036143 9 AKLLALQCLDLEYT-AIKE-VPEGM-EMLENLVHLTIYSK-MLIKFPAG-ILPKLCNLYSLRLNWGSETSRETVQEAARS 83 (355)
Q Consensus 9 ~~l~~L~~L~L~~~-~~~~-lP~~i-~~L~~L~~L~l~~~-~~~~lP~~-i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~ 83 (355)
.+++++++|.+.+| .++. .--++ ..+.+|++|++..| .++...-. +....++|.++++++|....+..+......
T Consensus 161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG 240 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG 240 (483)
T ss_pred hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc
Confidence 45889999999999 5552 12223 57899999999997 55543332 336789999999999987777667656666
Q ss_pred cccccceEEEe
Q 036143 84 SDRLDTFVGYF 94 (355)
Q Consensus 84 L~~L~~L~l~~ 94 (355)
+++++.+...+
T Consensus 241 ~~~l~~~~~kG 251 (483)
T KOG4341|consen 241 CKELEKLSLKG 251 (483)
T ss_pred chhhhhhhhcc
Confidence 77777775553
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.67 E-value=2.9e-05 Score=67.25 Aligned_cols=105 Identities=17% Similarity=0.198 Sum_probs=59.5
Q ss_pred ccccccccceecCCCccccccCc--cc-ccCcccceecccCccccccc--chhhhcCCCcceeeecccCCccccchhHhh
Q 036143 7 SLAKLLALQCLDLEYTAIKEVPE--GM-EMLENLVHLTIYSKMLIKFP--AGILPKLCNLYSLRLNWGSETSRETVQEAA 81 (355)
Q Consensus 7 ~i~~l~~L~~L~L~~~~~~~lP~--~i-~~L~~L~~L~l~~~~~~~lP--~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l 81 (355)
.+...+.++.|-+.++.|...-+ .+ ..+++.+.+|+.+|.+..-. ..|+.+|++|++|+++.+... ..+. .+
T Consensus 40 ~v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~--s~I~-~l 116 (418)
T KOG2982|consen 40 GVSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLS--SDIK-SL 116 (418)
T ss_pred eeccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCC--Cccc-cC
Confidence 34445555677777776654322 23 45678888888888766421 223478888888888865332 1111 22
Q ss_pred -cccccccceEEEeccCc--cccccccccccccccc
Q 036143 82 -RSSDRLDTFVGYFSKLD--DFNTYVKSSDGQRSKH 114 (355)
Q Consensus 82 -~~L~~L~~L~l~~~~~~--~~~~~~~~l~~L~~L~ 114 (355)
..+.+|+.+-+.+.... .....+..++.++.++
T Consensus 117 p~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelH 152 (418)
T KOG2982|consen 117 PLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELH 152 (418)
T ss_pred cccccceEEEEEcCCCCChhhhhhhhhcchhhhhhh
Confidence 23457777776544331 1223345555556555
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.47 E-value=5.7e-05 Score=74.99 Aligned_cols=83 Identities=19% Similarity=0.145 Sum_probs=56.4
Q ss_pred ccccceecCCCcccc--ccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhccccccc
Q 036143 11 LLALQCLDLEYTAIK--EVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLD 88 (355)
Q Consensus 11 l~~L~~L~L~~~~~~--~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 88 (355)
|++||.|.++|-.+. ++-.-..+++||+.||++++++..+ .++ ++|++|++|.+++........+. ++.+|++|+
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GI-S~LknLq~L~mrnLe~e~~~~l~-~LF~L~~L~ 223 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGI-SRLKNLQVLSMRNLEFESYQDLI-DLFNLKKLR 223 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHH-hccccHHHHhccCCCCCchhhHH-HHhcccCCC
Confidence 556666666664332 2222234677888888888888877 666 88888888888876554445556 788888888
Q ss_pred ceEEEecc
Q 036143 89 TFVGYFSK 96 (355)
Q Consensus 89 ~L~l~~~~ 96 (355)
.|+++...
T Consensus 224 vLDIS~~~ 231 (699)
T KOG3665|consen 224 VLDISRDK 231 (699)
T ss_pred eeeccccc
Confidence 88887544
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00024 Score=65.47 Aligned_cols=86 Identities=20% Similarity=0.339 Sum_probs=55.8
Q ss_pred CCCccEEeeccCCCccccchHHHHhhc-CCCCeEEEecCCCCceecccCcchhhhhcccccccccCcccceeeccccccc
Q 036143 196 FSHLKALWFSYCPNLQKLFSLQLLAAL-QNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPEL 274 (355)
Q Consensus 196 ~~~L~~L~l~~~~~l~~~~~~~~l~~L-~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 274 (355)
+.+++.|++++| .++.++ .+ ++|+.|.+.+|..+..++. .+ .++|++|.+.+|..+
T Consensus 51 ~~~l~~L~Is~c-~L~sLP------~LP~sLtsL~Lsnc~nLtsLP~--------------~L--P~nLe~L~Ls~Cs~L 107 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLP------VLPNELTEITIENCNNLTTLPG--------------SI--PEGLEKLTVCHCPEI 107 (426)
T ss_pred hcCCCEEEeCCC-CCcccC------CCCCCCcEEEccCCCCcccCCc--------------hh--hhhhhheEccCcccc
Confidence 366778888888 666643 23 3578888888888766653 21 247888888888766
Q ss_pred ceecCCCceecCCCceEEEEcC-CCCccccccCCCCCCC
Q 036143 275 KSVCSDNAVLICNSLQEIQITP-SCPKLKRLSLRLPPLD 312 (355)
Q Consensus 275 ~~i~~~~~~l~~~~L~~L~i~~-~c~~L~~lp~~~~~l~ 312 (355)
..++. +|++|.+.. .|..++.+|.++..|.
T Consensus 108 ~sLP~--------sLe~L~L~~n~~~~L~~LPssLk~L~ 138 (426)
T PRK15386 108 SGLPE--------SVRSLEIKGSATDSIKNVPNGLTSLS 138 (426)
T ss_pred ccccc--------ccceEEeCCCCCcccccCcchHhhee
Confidence 55543 566666631 3455677777776663
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.32 E-value=2.3e-05 Score=60.17 Aligned_cols=99 Identities=16% Similarity=0.137 Sum_probs=67.7
Q ss_pred ccceecCCCccccccCcc---cccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccccccc
Q 036143 13 ALQCLDLEYTAIKEVPEG---MEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLDT 89 (355)
Q Consensus 13 ~L~~L~L~~~~~~~lP~~---i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~ 89 (355)
.+-.+||++|.+-++++. +....+|...++++|.++.+|..+-.+.+.+.++++.++.. ..+|.++..++.|+.
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~nei---sdvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEI---SDVPEELAAMPALRS 104 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhh---hhchHHHhhhHHhhh
Confidence 455677888866555444 35566777778888888888887644555778888876543 445557888888888
Q ss_pred eEEEeccCccccccccccccccccc
Q 036143 90 FVGYFSKLDDFNTYVKSSDGQRSKH 114 (355)
Q Consensus 90 L~l~~~~~~~~~~~~~~l~~L~~L~ 114 (355)
+++.++.+...++.+..+.++..|.
T Consensus 105 lNl~~N~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 105 LNLRFNPLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred cccccCccccchHHHHHHHhHHHhc
Confidence 8887777776666665566655555
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00081 Score=62.04 Aligned_cols=54 Identities=22% Similarity=0.372 Sum_probs=28.3
Q ss_pred cEEEEeccCCccCCCccccCchhHHHH-HhhcccccccccccccccccccccccCCCccEEeeccCCCccc
Q 036143 143 KSVCFYGCKICEREGVTIVLPKDVQGL-IMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQK 212 (355)
Q Consensus 143 ~~~~L~~l~~~~~~~~~~~~~~~L~~L-l~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~ 212 (355)
..+.+++|.+..-+ .+|++|+.| +.+| ..++.+++. ..++|++|.+++|.++..
T Consensus 55 ~~L~Is~c~L~sLP----~LP~sLtsL~Lsnc-~nLtsLP~~-----------LP~nLe~L~Ls~Cs~L~s 109 (426)
T PRK15386 55 GRLYIKDCDIESLP----VLPNELTEITIENC-NNLTTLPGS-----------IPEGLEKLTVCHCPEISG 109 (426)
T ss_pred CEEEeCCCCCcccC----CCCCCCcEEEccCC-CCcccCCch-----------hhhhhhheEccCcccccc
Confidence 34444444443322 345566666 6666 554444331 224677777777765543
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.15 E-value=2.8e-05 Score=59.75 Aligned_cols=86 Identities=16% Similarity=0.193 Sum_probs=69.2
Q ss_pred cccccccceecCCCccccccCcccccC-cccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhccccc
Q 036143 8 LAKLLALQCLDLEYTAIKEVPEGMEML-ENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDR 86 (355)
Q Consensus 8 i~~l~~L~~L~L~~~~~~~lP~~i~~L-~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 86 (355)
+....+|...++++|.++.+|+.+... +-++.|++++|.+.++|.++ ..++.|+.++++++... ..+. .+..|.+
T Consensus 49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~-Aam~aLr~lNl~~N~l~--~~p~-vi~~L~~ 124 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEEL-AAMPALRSLNLRFNPLN--AEPR-VIAPLIK 124 (177)
T ss_pred HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHH-hhhHHhhhcccccCccc--cchH-HHHHHHh
Confidence 345567888899999999999998655 58999999999999999998 99999999999987553 3333 6666888
Q ss_pred ccceEEEeccC
Q 036143 87 LDTFVGYFSKL 97 (355)
Q Consensus 87 L~~L~l~~~~~ 97 (355)
|-.|+...+..
T Consensus 125 l~~Lds~~na~ 135 (177)
T KOG4579|consen 125 LDMLDSPENAR 135 (177)
T ss_pred HHHhcCCCCcc
Confidence 87777654443
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00013 Score=68.84 Aligned_cols=86 Identities=23% Similarity=0.261 Sum_probs=53.0
Q ss_pred cccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccccc
Q 036143 8 LAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRL 87 (355)
Q Consensus 8 i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L 87 (355)
++.+++|.+|++.+|.+.++...+..+++|++|++++|.+..+.. + ..++.|+.|++.++.. ..+. .+..+++|
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~-l-~~l~~L~~L~l~~N~i---~~~~-~~~~l~~L 164 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG-L-STLTLLKELNLSGNLI---SDIS-GLESLKSL 164 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccccc-h-hhccchhhheeccCcc---hhcc-CCccchhh
Confidence 556666777777777666665446667777777777776666643 2 5666677777666544 3334 45556666
Q ss_pred cceEEEeccCcc
Q 036143 88 DTFVGYFSKLDD 99 (355)
Q Consensus 88 ~~L~l~~~~~~~ 99 (355)
+.+++.++.+..
T Consensus 165 ~~l~l~~n~i~~ 176 (414)
T KOG0531|consen 165 KLLDLSYNRIVD 176 (414)
T ss_pred hcccCCcchhhh
Confidence 666665555443
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.00023 Score=36.64 Aligned_cols=20 Identities=25% Similarity=0.504 Sum_probs=10.8
Q ss_pred ccceecCCCccccccCcccc
Q 036143 13 ALQCLDLEYTAIKEVPEGME 32 (355)
Q Consensus 13 ~L~~L~L~~~~~~~lP~~i~ 32 (355)
+|++||+++|+++.+|.+++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSEESEEGTTTT
T ss_pred CccEEECCCCcCEeCChhhc
Confidence 35555555555555555444
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.00 E-value=3e-05 Score=74.67 Aligned_cols=87 Identities=23% Similarity=0.218 Sum_probs=54.1
Q ss_pred ccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhccccc
Q 036143 7 SLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDR 86 (355)
Q Consensus 7 ~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 86 (355)
++.=+..|+.|||+.|++.+.- .+..|.+|++||++.|.+..+|.---.... |+.|.++++.. ..+. +|.+|++
T Consensus 182 SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l---~tL~-gie~Lks 255 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNAL---TTLR-GIENLKS 255 (1096)
T ss_pred HHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeecccHH---Hhhh-hHHhhhh
Confidence 3444667788888888777664 677788888888888877776652102222 66666665433 3344 5666666
Q ss_pred ccceEEEeccCcc
Q 036143 87 LDTFVGYFSKLDD 99 (355)
Q Consensus 87 L~~L~l~~~~~~~ 99 (355)
|+.|++++|-..+
T Consensus 256 L~~LDlsyNll~~ 268 (1096)
T KOG1859|consen 256 LYGLDLSYNLLSE 268 (1096)
T ss_pred hhccchhHhhhhc
Confidence 6666666554433
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0003 Score=66.39 Aligned_cols=90 Identities=21% Similarity=0.323 Sum_probs=73.1
Q ss_pred CCCCCc-cccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHh
Q 036143 2 LERVPS-LAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEA 80 (355)
Q Consensus 2 l~~lP~-i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~ 80 (355)
|+.+.. +..+.+|++|++++|.|+.+. .+..+..|+.|++.+|.+..++. +..+++|+.+++.++.. ..+. .
T Consensus 107 i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~~--~~~l~~L~~l~l~~n~i---~~ie-~ 179 (414)
T KOG0531|consen 107 IEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDISG--LESLKSLKLLDLSYNRI---VDIE-N 179 (414)
T ss_pred hhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCcchhccC--CccchhhhcccCCcchh---hhhh-h
Confidence 556665 888999999999999999885 68888999999999999998865 36799999999998654 4444 4
Q ss_pred --hcccccccceEEEeccCc
Q 036143 81 --ARSSDRLDTFVGYFSKLD 98 (355)
Q Consensus 81 --l~~L~~L~~L~l~~~~~~ 98 (355)
+..+.+|+.+.+..+...
T Consensus 180 ~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 180 DELSELISLEELDLGGNSIR 199 (414)
T ss_pred hhhhhccchHHHhccCCchh
Confidence 578888888888655543
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.00074 Score=67.20 Aligned_cols=88 Identities=17% Similarity=0.228 Sum_probs=65.2
Q ss_pred ccccccceecCCCccccccCcccccCcccceecccCccccccc--chhhhcCCCcceeeecccCCccccc-hhH---hhc
Q 036143 9 AKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFP--AGILPKLCNLYSLRLNWGSETSRET-VQE---AAR 82 (355)
Q Consensus 9 ~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP--~~i~~~L~~L~~L~l~~~~~~~~~~-~~~---~l~ 82 (355)
.++++|+.||+++++++.+ .++++|+|||.|.+.+-.+..-. .++ -+|++|++||++......... +.. .-.
T Consensus 170 ~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~L-F~L~~L~vLDIS~~~~~~~~~ii~qYlec~~ 247 (699)
T KOG3665|consen 170 ASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDL-FNLKKLRVLDISRDKNNDDTKIIEQYLECGM 247 (699)
T ss_pred hccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHH-hcccCCCeeeccccccccchHHHHHHHHhcc
Confidence 3689999999999999988 78999999999999986666432 233 789999999999754332221 111 122
Q ss_pred ccccccceEEEeccCc
Q 036143 83 SSDRLDTFVGYFSKLD 98 (355)
Q Consensus 83 ~L~~L~~L~l~~~~~~ 98 (355)
.|++||.|+++++...
T Consensus 248 ~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 248 VLPELRFLDCSGTDIN 263 (699)
T ss_pred cCccccEEecCCcchh
Confidence 3889999998866543
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.00014 Score=70.39 Aligned_cols=89 Identities=25% Similarity=0.285 Sum_probs=70.8
Q ss_pred ccccccccceecCCCccccccCccc-ccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccc
Q 036143 7 SLAKLLALQCLDLEYTAIKEVPEGM-EMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSD 85 (355)
Q Consensus 7 ~i~~l~~L~~L~L~~~~~~~lP~~i-~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~ 85 (355)
.+..|.+|++|||++|.+..+|.-= ..+. |+.|.+++|.++.+ .+| .+|.+|+.||++++-...-..+. -++.|.
T Consensus 204 ~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL-~gi-e~LksL~~LDlsyNll~~hseL~-pLwsLs 279 (1096)
T KOG1859|consen 204 NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL-RGI-ENLKSLYGLDLSYNLLSEHSELE-PLWSLS 279 (1096)
T ss_pred HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh-hhH-HhhhhhhccchhHhhhhcchhhh-HHHHHH
Confidence 4556889999999999998887532 3343 99999999998887 456 99999999999997554445555 788999
Q ss_pred cccceEEEeccCcc
Q 036143 86 RLDTFVGYFSKLDD 99 (355)
Q Consensus 86 ~L~~L~l~~~~~~~ 99 (355)
.|+.|++.+|....
T Consensus 280 ~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 280 SLIVLWLEGNPLCC 293 (1096)
T ss_pred HHHHHhhcCCcccc
Confidence 99999998776533
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.00094 Score=34.28 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=18.2
Q ss_pred ccceecccCcccccccchhhhcC
Q 036143 36 NLVHLTIYSKMLIKFPAGILPKL 58 (355)
Q Consensus 36 ~L~~L~l~~~~~~~lP~~i~~~L 58 (355)
+|++||+++|.++.+|.++ ++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~-~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSF-SNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTT-TT-
T ss_pred CccEEECCCCcCEeCChhh-cCC
Confidence 5899999999999999885 654
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.0041 Score=51.22 Aligned_cols=100 Identities=14% Similarity=0.170 Sum_probs=67.0
Q ss_pred ccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccccccceEE
Q 036143 13 ALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLDTFVG 92 (355)
Q Consensus 13 ~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L~l 92 (355)
+.-.+||++|++..++ .+..+..|.+|.+.+|.+..+...+-..+++|.+|.+.++....-..+. .+..+++|+.|.+
T Consensus 43 ~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~-pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLD-PLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcc-hhccCCccceeee
Confidence 4457888888777664 5667888888888888888887777345567888888876554334444 5677778888887
Q ss_pred EeccCcc---cc-ccccccccccccc
Q 036143 93 YFSKLDD---FN-TYVKSSDGQRSKH 114 (355)
Q Consensus 93 ~~~~~~~---~~-~~~~~l~~L~~L~ 114 (355)
-++.... .. -.+..++.++.|+
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LD 146 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLD 146 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEee
Confidence 6555432 11 1244555555555
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.0033 Score=53.77 Aligned_cols=86 Identities=14% Similarity=0.164 Sum_probs=53.9
Q ss_pred cccccceecCCCccccccCcccccCcccceecccCc--ccc-cccchhhhcCCCcceeeecccCCccccchhHhhccccc
Q 036143 10 KLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSK--MLI-KFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDR 86 (355)
Q Consensus 10 ~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~--~~~-~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 86 (355)
.+..|+.|++.++.++.+- .+..|++|++|+++.| .+. .++.-+ .++++|++++++.+.......++ .+..+.+
T Consensus 41 ~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~-e~~P~l~~l~ls~Nki~~lstl~-pl~~l~n 117 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLA-EKAPNLKVLNLSGNKIKDLSTLR-PLKELEN 117 (260)
T ss_pred cccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehh-hhCCceeEEeecCCccccccccc-hhhhhcc
Confidence 4566777777777555442 3446778888888887 332 344444 66688888888876554344444 5666667
Q ss_pred ccceEEEeccCc
Q 036143 87 LDTFVGYFSKLD 98 (355)
Q Consensus 87 L~~L~l~~~~~~ 98 (355)
|..|.++.+...
T Consensus 118 L~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 118 LKSLDLFNCSVT 129 (260)
T ss_pred hhhhhcccCCcc
Confidence 777777655443
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.0009 Score=59.38 Aligned_cols=90 Identities=17% Similarity=0.155 Sum_probs=60.0
Q ss_pred cccccccceecCCCcccc-----ccCcccccCcccceecccCcc----cccccchh------hhcCCCcceeeecccCCc
Q 036143 8 LAKLLALQCLDLEYTAIK-----EVPEGMEMLENLVHLTIYSKM----LIKFPAGI------LPKLCNLYSLRLNWGSET 72 (355)
Q Consensus 8 i~~l~~L~~L~L~~~~~~-----~lP~~i~~L~~L~~L~l~~~~----~~~lP~~i------~~~L~~L~~L~l~~~~~~ 72 (355)
+-....+..++|+||.+. .+.+.+.+.++|+..++++-. ..++|..+ +-..++|++||++++- +
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA-~ 104 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA-F 104 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc-c
Confidence 345677889999999664 355566777888888888741 22455543 2445689999999853 2
Q ss_pred cccchh---HhhcccccccceEEEeccCc
Q 036143 73 SRETVQ---EAARSSDRLDTFVGYFSKLD 98 (355)
Q Consensus 73 ~~~~~~---~~l~~L~~L~~L~l~~~~~~ 98 (355)
+...++ .-|..++.|++|++..++..
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg 133 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLG 133 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCC
Confidence 333333 25667888999998766653
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.0031 Score=56.09 Aligned_cols=218 Identities=18% Similarity=0.167 Sum_probs=115.1
Q ss_pred ccccccceecCCCc---cc-cccCccc-------ccCcccceecccCcccc-cccchh---hhcCCCcceeeecccCCcc
Q 036143 9 AKLLALQCLDLEYT---AI-KEVPEGM-------EMLENLVHLTIYSKMLI-KFPAGI---LPKLCNLYSLRLNWGSETS 73 (355)
Q Consensus 9 ~~l~~L~~L~L~~~---~~-~~lP~~i-------~~L~~L~~L~l~~~~~~-~lP~~i---~~~L~~L~~L~l~~~~~~~ 73 (355)
.+-++||.-++++- .. .++|+.+ -.+++|++||||.|.+. ..+..+ +...+.|++|.+.+|+...
T Consensus 55 ~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~ 134 (382)
T KOG1909|consen 55 ASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGP 134 (382)
T ss_pred hhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCCh
Confidence 34557777777654 22 2555554 35668999999998433 233332 5788889999998875421
Q ss_pred --ccc---------hhHhhcccccccceEEEeccCcccc-----ccccccccccccccccccceeEeecCCCcc---ccc
Q 036143 74 --RET---------VQEAARSSDRLDTFVGYFSKLDDFN-----TYVKSSDGQRSKHFHFQVSTVYNGSAANTR---FYS 134 (355)
Q Consensus 74 --~~~---------~~~~l~~L~~L~~L~l~~~~~~~~~-----~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~---~~~ 134 (355)
+.. ....++.-++||.+.+..|...+.. ..++..+.+..++ +..+.+..-. ...
T Consensus 135 ~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr-------~~qN~I~~eG~~al~e 207 (382)
T KOG1909|consen 135 EAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVR-------LSQNGIRPEGVTALAE 207 (382)
T ss_pred hHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEE-------EecccccCchhHHHHH
Confidence 111 1113555668888888766654422 2344455566655 3333333221 112
Q ss_pred eecccCCccEEEEeccCCccCCCccccCchhHHHHHhhcccccccccccccccccccccccCCCccEEeeccCCCccccc
Q 036143 135 FLRTREANKSVCFYGCKICEREGVTIVLPKDVQGLIMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLF 214 (355)
Q Consensus 135 ~l~~~~~~~~~~L~~l~~~~~~~~~~~~~~~L~~Ll~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 214 (355)
.+...+.++.++|+++.++..+... +.. .+ ..+++|+.|++++| .++.-.
T Consensus 208 al~~~~~LevLdl~DNtft~egs~~----------Lak---------aL----------~s~~~L~El~l~dc-ll~~~G 257 (382)
T KOG1909|consen 208 ALEHCPHLEVLDLRDNTFTLEGSVA----------LAK---------AL----------SSWPHLRELNLGDC-LLENEG 257 (382)
T ss_pred HHHhCCcceeeecccchhhhHHHHH----------HHH---------Hh----------cccchheeeccccc-cccccc
Confidence 2233455666666666554322111 110 01 24556777777777 444322
Q ss_pred hHH----HHhhcCCCCeEEEecCCCCceecccCcchhhhhcccccccccCcccceeecccccc
Q 036143 215 SLQ----LLAALQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPE 273 (355)
Q Consensus 215 ~~~----~l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 273 (355)
... .-...|+|+.|.+.++....+-.. .........|.|+.|.|.+|..
T Consensus 258 a~a~~~al~~~~p~L~vl~l~gNeIt~da~~----------~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 258 AIAFVDALKESAPSLEVLELAGNEITRDAAL----------ALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHHHHhccCCCCceeccCcchhHHHHHH----------HHHHHHhcchhhHHhcCCcccc
Confidence 211 112367777777776553322110 0111444577788888877753
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.0054 Score=58.80 Aligned_cols=103 Identities=19% Similarity=0.102 Sum_probs=58.6
Q ss_pred ccccceecCCCc-cccc--cCcccccCcccceecccCc--cccccc---chhhhcCCCcceeeecccCCccccchhHhhc
Q 036143 11 LLALQCLDLEYT-AIKE--VPEGMEMLENLVHLTIYSK--MLIKFP---AGILPKLCNLYSLRLNWGSETSRETVQEAAR 82 (355)
Q Consensus 11 l~~L~~L~L~~~-~~~~--lP~~i~~L~~L~~L~l~~~--~~~~lP---~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~ 82 (355)
+.+|+.|.+.++ .+.. +-.....+.+|+.|+++++ .....+ ..+...+.+|+.|+++++...+...+. .+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~-~l~ 265 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLS-ALA 265 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHH-HHH
Confidence 567777777777 5554 3344567788888888763 222222 112255677888888877655556666 444
Q ss_pred c-cccccceEEEecc-Ccc--ccccccccccccccc
Q 036143 83 S-SDRLDTFVGYFSK-LDD--FNTYVKSSDGQRSKH 114 (355)
Q Consensus 83 ~-L~~L~~L~l~~~~-~~~--~~~~~~~l~~L~~L~ 114 (355)
. +++|++|.+..+. ..+ +......++.|+.|.
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~ 301 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELD 301 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEe
Confidence 3 6777777754333 111 222233445566555
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.0071 Score=51.74 Aligned_cols=86 Identities=17% Similarity=0.129 Sum_probs=49.6
Q ss_pred cCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccccccceEEEeccCccc--cccc
Q 036143 27 VPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLDTFVGYFSKLDDF--NTYV 104 (355)
Q Consensus 27 lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~--~~~~ 104 (355)
+....-...+|++|.+.++.++.+-. + -+|++|+.|.++.+.......++.-..++++|+++.++.|.+... ...+
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~~~-~-P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl 112 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTLTN-F-PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL 112 (260)
T ss_pred cccccccccchhhhhhhccceeeccc-C-CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh
Confidence 44444556777777777776665533 2 577888888888763322233332344458888888887776541 1223
Q ss_pred cccccccccc
Q 036143 105 KSSDGQRSKH 114 (355)
Q Consensus 105 ~~l~~L~~L~ 114 (355)
+.+.+|..|.
T Consensus 113 ~~l~nL~~Ld 122 (260)
T KOG2739|consen 113 KELENLKSLD 122 (260)
T ss_pred hhhcchhhhh
Confidence 3444444444
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.0061 Score=29.01 Aligned_cols=16 Identities=31% Similarity=0.596 Sum_probs=5.8
Q ss_pred ccceecCCCccccccC
Q 036143 13 ALQCLDLEYTAIKEVP 28 (355)
Q Consensus 13 ~L~~L~L~~~~~~~lP 28 (355)
+|++|++++|.++.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 3455555555444443
|
... |
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.015 Score=47.99 Aligned_cols=91 Identities=19% Similarity=0.127 Sum_probs=67.2
Q ss_pred CCCCCccccccccceecCCCccccccCcccc-cCcccceecccCcccccccchh-hhcCCCcceeeecccCCcc--ccch
Q 036143 2 LERVPSLAKLLALQCLDLEYTAIKEVPEGME-MLENLVHLTIYSKMLIKFPAGI-LPKLCNLYSLRLNWGSETS--RETV 77 (355)
Q Consensus 2 l~~lP~i~~l~~L~~L~L~~~~~~~lP~~i~-~L~~L~~L~l~~~~~~~lP~~i-~~~L~~L~~L~l~~~~~~~--~~~~ 77 (355)
+..++.+..+..|.+|.+.+|.|+++-..++ .+++|..|.+.+|.+..+-+-- +..++.|++|.+-++.... .-..
T Consensus 54 l~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~ 133 (233)
T KOG1644|consen 54 LRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRL 133 (233)
T ss_pred hhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCcee
Confidence 3455667778999999999999999966664 5678999999999877663210 2678889999887754321 1222
Q ss_pred hHhhcccccccceEEE
Q 036143 78 QEAARSSDRLDTFVGY 93 (355)
Q Consensus 78 ~~~l~~L~~L~~L~l~ 93 (355)
- .+..+++|+.|++.
T Consensus 134 y-vl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 134 Y-VLYKLPSLRTLDFQ 148 (233)
T ss_pred E-EEEecCcceEeehh
Confidence 2 68899999999985
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.0093 Score=28.37 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=10.7
Q ss_pred cccceecccCccccccc
Q 036143 35 ENLVHLTIYSKMLIKFP 51 (355)
Q Consensus 35 ~~L~~L~l~~~~~~~lP 51 (355)
++|+.|++++|.++++|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 47889999999888776
|
... |
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.0032 Score=54.41 Aligned_cols=81 Identities=15% Similarity=0.078 Sum_probs=54.9
Q ss_pred ccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccccccce
Q 036143 11 LLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLDTF 90 (355)
Q Consensus 11 l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L 90 (355)
+.+.+-|++-||++..+. -..+++.|+.|.|+-|++..+-. +..+++|+.|+++.+.+..-..+. .+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~-YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELE-YLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHH-HHhcCchhhhH
Confidence 556666777777776653 23567778888888887777644 367888888888876553334444 67777778877
Q ss_pred EEEec
Q 036143 91 VGYFS 95 (355)
Q Consensus 91 ~l~~~ 95 (355)
.+..|
T Consensus 94 WL~EN 98 (388)
T KOG2123|consen 94 WLDEN 98 (388)
T ss_pred hhccC
Confidence 77533
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.011 Score=51.67 Aligned_cols=86 Identities=19% Similarity=0.093 Sum_probs=58.9
Q ss_pred cccccceecCCCcccc---ccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhccccc
Q 036143 10 KLLALQCLDLEYTAIK---EVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDR 86 (355)
Q Consensus 10 ~l~~L~~L~L~~~~~~---~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 86 (355)
.+++++.|||.+|.+. ++-..+.+|++|++|+++.|.+..--...=.-+.+|++|-+.++... =......+..+++
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~-w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLS-WTQSTSSLDDLPK 147 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCC-hhhhhhhhhcchh
Confidence 3678899999999776 45545578999999999999655321111025578999988764321 1222226778888
Q ss_pred ccceEEEecc
Q 036143 87 LDTFVGYFSK 96 (355)
Q Consensus 87 L~~L~l~~~~ 96 (355)
+++|+++.++
T Consensus 148 vtelHmS~N~ 157 (418)
T KOG2982|consen 148 VTELHMSDNS 157 (418)
T ss_pred hhhhhhccch
Confidence 9999887654
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.0024 Score=55.20 Aligned_cols=81 Identities=17% Similarity=0.157 Sum_probs=59.2
Q ss_pred ccccccceecCCCccccccCcccccCcccceecccCcccccccchh-hhcCCCcceeeecccCCcccc----chhHhhcc
Q 036143 9 AKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGI-LPKLCNLYSLRLNWGSETSRE----TVQEAARS 83 (355)
Q Consensus 9 ~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i-~~~L~~L~~L~l~~~~~~~~~----~~~~~l~~ 83 (355)
.++..|++|.|+-|.|+.+- .+..|++|+.|.|..|.|.++..-. +.++++|++|-+..+.--... ... .+..
T Consensus 38 ~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~-VLR~ 115 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRK-VLRV 115 (388)
T ss_pred HhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHH-HHHH
Confidence 36888999999999998883 5889999999999999888775421 578888998888865322111 112 5667
Q ss_pred cccccceE
Q 036143 84 SDRLDTFV 91 (355)
Q Consensus 84 L~~L~~L~ 91 (355)
|++|+.|+
T Consensus 116 LPnLkKLD 123 (388)
T KOG2123|consen 116 LPNLKKLD 123 (388)
T ss_pred cccchhcc
Confidence 77777765
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.037 Score=29.48 Aligned_cols=20 Identities=30% Similarity=0.489 Sum_probs=9.9
Q ss_pred cccceecccCcccccccchh
Q 036143 35 ENLVHLTIYSKMLIKFPAGI 54 (355)
Q Consensus 35 ~~L~~L~l~~~~~~~lP~~i 54 (355)
.+|++|++++|.++.+|.++
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 34455555555555555443
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.037 Score=29.48 Aligned_cols=20 Identities=30% Similarity=0.489 Sum_probs=9.9
Q ss_pred cccceecccCcccccccchh
Q 036143 35 ENLVHLTIYSKMLIKFPAGI 54 (355)
Q Consensus 35 ~~L~~L~l~~~~~~~lP~~i 54 (355)
.+|++|++++|.++.+|.++
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 34455555555555555443
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.044 Score=29.19 Aligned_cols=20 Identities=35% Similarity=0.572 Sum_probs=16.8
Q ss_pred ccccceecCCCccccccCcc
Q 036143 11 LLALQCLDLEYTAIKEVPEG 30 (355)
Q Consensus 11 l~~L~~L~L~~~~~~~lP~~ 30 (355)
+++|++|+|++|.++.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 46889999999999988864
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.044 Score=29.19 Aligned_cols=20 Identities=35% Similarity=0.572 Sum_probs=16.8
Q ss_pred ccccceecCCCccccccCcc
Q 036143 11 LLALQCLDLEYTAIKEVPEG 30 (355)
Q Consensus 11 l~~L~~L~L~~~~~~~lP~~ 30 (355)
+++|++|+|++|.++.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 46889999999999988864
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.31 E-value=0.0069 Score=51.06 Aligned_cols=86 Identities=12% Similarity=0.186 Sum_probs=51.2
Q ss_pred CCCC--ccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHh
Q 036143 3 ERVP--SLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEA 80 (355)
Q Consensus 3 ~~lP--~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~ 80 (355)
.++| +|..+..-.+||++.|.+..+-..+.-++.|..||++.+.+..+|.+. +.+..+++++...++. ...|..
T Consensus 31 s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~-~q~~e~~~~~~~~n~~---~~~p~s 106 (326)
T KOG0473|consen 31 SEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDA-KQQRETVNAASHKNNH---SQQPKS 106 (326)
T ss_pred cccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhH-HHHHHHHHHHhhccch---hhCCcc
Confidence 3456 666666667777777666666666666666666666666666666666 6666666666554332 222224
Q ss_pred hcccccccceEE
Q 036143 81 ARSSDRLDTFVG 92 (355)
Q Consensus 81 l~~L~~L~~L~l 92 (355)
.+.+++++.+..
T Consensus 107 ~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 107 QKKEPHPKKNEQ 118 (326)
T ss_pred ccccCCcchhhh
Confidence 555555555544
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.10 E-value=0.026 Score=46.62 Aligned_cols=69 Identities=22% Similarity=0.272 Sum_probs=40.4
Q ss_pred cCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCceecccCcchhhhhcccccccccCcccceeeccccccc
Q 036143 195 KFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPEL 274 (355)
Q Consensus 195 ~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 274 (355)
.++.++.|.+.+|..+.+..-...-+-.++|+.|+|++|+++.+-= -+.+..|++|+.|.+.+++..
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~G-------------L~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGG-------------LACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhH-------------HHHHHHhhhhHHHHhcCchhh
Confidence 4555666677777666664322212235677777777777664431 115566777777777776655
Q ss_pred ce
Q 036143 275 KS 276 (355)
Q Consensus 275 ~~ 276 (355)
..
T Consensus 190 ~~ 191 (221)
T KOG3864|consen 190 AN 191 (221)
T ss_pred hc
Confidence 43
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=91.13 E-value=0.21 Score=38.27 Aligned_cols=82 Identities=12% Similarity=0.084 Sum_probs=51.2
Q ss_pred ccccccccceecCCCccccccCcc-cccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccc
Q 036143 7 SLAKLLALQCLDLEYTAIKEVPEG-MEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSD 85 (355)
Q Consensus 7 ~i~~l~~L~~L~L~~~~~~~lP~~-i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~ 85 (355)
.+.++.+|+.+.+.. .+..+++. +..+.+|+.+.+.++ +..++...+..+.+|+.+.+... ....... .+..++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~-~F~~~~ 81 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN--LKSIGDN-AFSNCT 81 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST--T-EE-TT-TTTT-T
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccccc--ccccccc-cccccc
Confidence 677888999999875 57777555 677889999999885 88888887788888999999642 1112222 566788
Q ss_pred cccceEEE
Q 036143 86 RLDTFVGY 93 (355)
Q Consensus 86 ~L~~L~l~ 93 (355)
+|+.+.+.
T Consensus 82 ~l~~i~~~ 89 (129)
T PF13306_consen 82 NLKNIDIP 89 (129)
T ss_dssp TECEEEET
T ss_pred cccccccC
Confidence 89888874
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.87 E-value=0.096 Score=50.16 Aligned_cols=14 Identities=36% Similarity=0.365 Sum_probs=7.1
Q ss_pred Ccccceeecccccc
Q 036143 260 LPRLKKLWLSFLPE 273 (355)
Q Consensus 260 ~~~L~~L~l~~~~~ 273 (355)
+++|++|.+.+|..
T Consensus 268 c~~L~~L~l~~c~~ 281 (482)
T KOG1947|consen 268 CPNLETLSLSNCSN 281 (482)
T ss_pred CCCcceEccCCCCc
Confidence 44555555544543
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=90.43 E-value=0.36 Score=36.96 Aligned_cols=79 Identities=11% Similarity=0.083 Sum_probs=37.6
Q ss_pred cccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccccccceEEEeccCcccc-cccccccc
Q 036143 31 MEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLDTFVGYFSKLDDFN-TYVKSSDG 109 (355)
Q Consensus 31 i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~-~~~~~l~~ 109 (355)
+.++.+|+.+.+.. .+..++...|...++|+.+.+... .....-. .+..+++|+.+.+. +...... ..+.....
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~-~F~~~~~l~~i~~~-~~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDN-AFSNCKSLESITFP-NNLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TT-TTTT-TT-EEEEET-STT-EE-TTTTTT-TT
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc--cccccee-eeeccccccccccc-cccccccccccccccc
Confidence 46677888888775 467777776677878888887752 2222222 56667677777773 2222222 22334455
Q ss_pred ccccc
Q 036143 110 QRSKH 114 (355)
Q Consensus 110 L~~L~ 114 (355)
++.+.
T Consensus 83 l~~i~ 87 (129)
T PF13306_consen 83 LKNID 87 (129)
T ss_dssp ECEEE
T ss_pred ccccc
Confidence 55444
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.39 E-value=0.049 Score=45.04 Aligned_cols=72 Identities=18% Similarity=0.244 Sum_probs=44.4
Q ss_pred HHhhcCCCCeEEEecCCCCceecccCcchhhhhcccccccccCcccceeecccccccceecCCCceecCCCceEEEEcCC
Q 036143 218 LLAALQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAVLICNSLQEIQITPS 297 (355)
Q Consensus 218 ~l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~~~L~~L~i~~~ 297 (355)
-+..+++++.|.+.+|..+..+--.. -.+.+|+|+.|+|++|+.+++--.. ....|++|+.|.+. +
T Consensus 120 ~L~~l~~i~~l~l~~ck~~dD~~L~~------------l~~~~~~L~~L~lsgC~rIT~~GL~-~L~~lknLr~L~l~-~ 185 (221)
T KOG3864|consen 120 HLRDLRSIKSLSLANCKYFDDWCLER------------LGGLAPSLQDLDLSGCPRITDGGLA-CLLKLKNLRRLHLY-D 185 (221)
T ss_pred HHhccchhhhheeccccchhhHHHHH------------hcccccchheeeccCCCeechhHHH-HHHHhhhhHHHHhc-C
Confidence 35667777788888887776553211 2236788888888888876554110 11236788888887 5
Q ss_pred CCcccc
Q 036143 298 CPKLKR 303 (355)
Q Consensus 298 c~~L~~ 303 (355)
-+....
T Consensus 186 l~~v~~ 191 (221)
T KOG3864|consen 186 LPYVAN 191 (221)
T ss_pred chhhhc
Confidence 444433
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.70 E-value=0.3 Score=42.45 Aligned_cols=86 Identities=19% Similarity=0.086 Sum_probs=54.4
Q ss_pred ccccceecCCCcccc-----ccCcccccCcccceecccCccc----ccccchh------hhcCCCcceeeecccCCcccc
Q 036143 11 LLALQCLDLEYTAIK-----EVPEGMEMLENLVHLTIYSKML----IKFPAGI------LPKLCNLYSLRLNWGSETSRE 75 (355)
Q Consensus 11 l~~L~~L~L~~~~~~-----~lP~~i~~L~~L~~L~l~~~~~----~~lP~~i------~~~L~~L~~L~l~~~~~~~~~ 75 (355)
+..+..+||+||.|. .+...|.+-.+|+..+++.-.. .++|..+ +-++++|+.++++++.. +..
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf-g~~ 107 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF-GSE 107 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc-Ccc
Confidence 556778888888664 3455556667788887776311 2334332 36778888888887543 222
Q ss_pred chh---HhhcccccccceEEEeccC
Q 036143 76 TVQ---EAARSSDRLDTFVGYFSKL 97 (355)
Q Consensus 76 ~~~---~~l~~L~~L~~L~l~~~~~ 97 (355)
.++ ..|+.-+.|.||.+..|+.
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCC
Confidence 222 1566777888888876654
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.16 E-value=0.035 Score=46.91 Aligned_cols=63 Identities=17% Similarity=0.070 Sum_probs=56.4
Q ss_pred ccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccC
Q 036143 7 SLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGS 70 (355)
Q Consensus 7 ~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~ 70 (355)
.++-++.|..||++.+.+..+|++++++..++.+++..|.....|.+. ++++++++++...+.
T Consensus 60 n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~-~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 60 NFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQ-KKEPHPKKNEQKKTE 122 (326)
T ss_pred chHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccc-cccCCcchhhhccCc
Confidence 456678888999999999999999999999999999999999999998 999999999988653
|
|
| >smart00364 LRR_BAC Leucine-rich repeats, bacterial type | Back alignment and domain information |
|---|
Probab=80.84 E-value=0.93 Score=24.10 Aligned_cols=17 Identities=24% Similarity=0.454 Sum_probs=12.0
Q ss_pred ccceecccCcccccccc
Q 036143 36 NLVHLTIYSKMLIKFPA 52 (355)
Q Consensus 36 ~L~~L~l~~~~~~~lP~ 52 (355)
+|++|++++|.++.+|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 56777777777777765
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 42.4 bits (99), Expect = 2e-04
Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 2/67 (2%)
Query: 1 RLERVPSLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCN 60
L + L +LL + LDL + ++ +P + L L L L + L
Sbjct: 452 DLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG--VANLPR 509
Query: 61 LYSLRLN 67
L L L
Sbjct: 510 LQELLLC 516
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 2e-04
Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Query: 1 RLERVPSLAKLLALQCLDLEYTAIKEVPEGM-EMLENLVHLTIYSKMLIKFPAGILPKLC 59
++ +P+L L+ L+ L++ E+ G L +L L + + + L
Sbjct: 207 NIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLA 266
Query: 60 NLYSLRLN 67
+L L L
Sbjct: 267 SLVELNLA 274
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 2e-04
Identities = 41/258 (15%), Positives = 86/258 (33%), Gaps = 62/258 (24%)
Query: 151 KICEREGVTIVLPKDVQGLIMRDIEDVTSLNDVFSKEQ--GLVNA--AKFSHLKALWF-- 204
+ ++ +++ V +D++D + SKE+ ++ + A L+ W
Sbjct: 15 QYQYKDILSVFEDAFVDNFDCKDVQD--MPKSILSKEEIDHIIMSKDAVSGTLRLFWTLL 72
Query: 205 SYCPNLQKLFSLQLLAALQNLEFLV--VQSCNRNEEIVEVNDEETQKEL--GISAIT-IT 259
S + + F ++L N +FL+ +++ R ++ E + L
Sbjct: 73 SKQEEMVQKFVEEVLR--INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130
Query: 260 LPRLKKLW-L-SFLPEL---------------KS-----VCSDNAVLICN-------SLQ 290
+ RL+ L L EL K+ VC V +L+
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK 190
Query: 291 EIQITPSCPK-LKRLSLRLPPLDNGQPSPSPA----LEVIKIR-KELWESLE-------- 336
+ + L++L ++ P + S + I+ + L +S
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250
Query: 337 ---WDQANAKDVLNPYCK 351
+ A A + N CK
Sbjct: 251 LNVQN-AKAWNAFNLSCK 267
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.0 bits (95), Expect = 5e-04
Identities = 42/308 (13%), Positives = 82/308 (26%), Gaps = 110/308 (35%)
Query: 31 MEMLENLVHLTIYSKMLIKFPAGILPKLCNL------YSLRLNWGSETSRETVQEAARSS 84
+EML+ L++ I P + LR++ R ++ +
Sbjct: 199 LEMLQKLLYQ-------------IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 85 DRLDTFVGYFSKLDDFNTYVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKS 144
L L + V + + F+ + L TR K
Sbjct: 246 CLLV--------LLN----V--QNAKAWNAFNLSCKIL-------------LTTR--FKQ 276
Query: 145 VCFYGCKICEREGVTIVLPKDVQGLIMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWF 204
V D + + + ++ K+ +
Sbjct: 277 VT------------------DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP--- 315
Query: 205 SYCPNLQKL---------FSLQLLAA-LQN----LEFLVVQSCNRNEEIVEV-----NDE 245
Q L L ++A +++ + +C++ I+E
Sbjct: 316 ------QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369
Query: 246 ETQK---ELGI--SAITITLPRLKKLWLSFLPELKSVCSDNAV--LICNSLQEIQITPSC 298
E +K L + + I L +W ++ V L SL E Q
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILLSLIWF----DVIKSDVMVVVNKLHKYSLVEKQ----- 420
Query: 299 PKLKRLSL 306
PK +S+
Sbjct: 421 PKESTISI 428
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 3e-04
Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
Query: 1 RLERVPSLAKLLALQCLDLEYTAIKEVPEGM-EMLENLVHLTIYSKMLIKFPAGILPKLC 59
L +P+L L+ L LDL + + G + L +L L + + L
Sbjct: 196 NLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQ 255
Query: 60 NLYSLRLN 67
+L + L
Sbjct: 256 SLVEINLA 263
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 40.7 bits (95), Expect = 6e-04
Identities = 16/110 (14%), Positives = 41/110 (37%), Gaps = 17/110 (15%)
Query: 197 SHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAI 256
+ ++ L Y + L+ NLE L ++ + D G+ +
Sbjct: 293 AQIRKLDLLYALLETEDH-CTLIQKCPNLEVLETRNV--------IGDR------GLEVL 337
Query: 257 TITLPRLKKLWLSFLPELKSVCSDNAVLICNSLQEIQITPSCPKLKRLSL 306
+LK+L + + + + + ++ L I + C +L+ +++
Sbjct: 338 AQYCKQLKRLRIERGADEQGMEDEEGLVSQRGL--IALAQGCQELEYMAV 385
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 6e-04
Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Query: 1 RLERVPSLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCN 60
+ L+ LQ L LE+T I+ +P + L+NL L I + L I L
Sbjct: 172 STDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIH-HLPK 230
Query: 61 LYSLRLNWGSE 71
L L L +
Sbjct: 231 LEELDLRGCTA 241
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 39.8 bits (93), Expect = 8e-04
Identities = 15/68 (22%), Positives = 24/68 (35%), Gaps = 1/68 (1%)
Query: 1 RLERVPSLAKLLALQCLDLEYTAIKEVPEGM-EMLENLVHLTIYSKMLIKFPAGILPKLC 59
RL + +L L L L + + + + NL +L + S L + L
Sbjct: 53 RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQ 112
Query: 60 NLYSLRLN 67
L L L
Sbjct: 113 ALEVLLLY 120
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 355 | |||
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.87 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.83 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.83 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.82 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.82 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.81 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.81 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.8 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.8 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.79 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.79 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.78 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.78 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.78 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.78 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.77 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.77 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.77 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.77 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.77 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.77 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.77 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.76 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.76 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.76 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.76 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.75 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.75 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.75 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.75 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.74 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.74 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.73 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.73 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.73 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.73 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.72 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.72 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.72 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.72 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.72 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.71 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.71 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.71 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.71 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.7 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.7 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.69 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.66 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.66 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.66 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.66 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.65 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.65 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.64 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.63 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.62 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.62 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.62 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.62 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.61 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.58 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.58 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.58 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.57 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.56 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.55 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.55 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.54 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.53 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.52 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.51 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.5 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.5 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.5 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.5 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.49 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.49 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.49 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.49 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.48 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.47 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.41 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.4 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.4 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.39 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.37 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.36 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.36 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.35 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.34 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.34 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.33 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.33 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.33 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.31 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.26 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.23 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.22 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.21 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.21 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.2 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.2 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.2 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.19 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.18 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.17 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.16 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.13 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.13 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.12 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.12 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.11 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.11 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.11 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.11 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.1 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.1 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.08 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.08 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.08 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.08 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.07 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.03 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.02 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.0 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.0 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.0 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.0 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 98.98 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 98.96 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.94 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 98.92 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 98.92 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.91 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 98.85 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 98.83 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 98.82 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.8 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 98.79 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.52 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 98.35 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.24 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.01 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 98.01 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 97.99 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 97.94 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 97.9 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 97.85 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.83 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.25 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 97.18 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 97.16 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 97.15 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 97.04 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 96.74 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 96.38 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 96.19 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 95.36 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 92.38 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 92.01 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 90.88 |
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-21 Score=176.70 Aligned_cols=240 Identities=20% Similarity=0.194 Sum_probs=180.9
Q ss_pred ccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccccccce
Q 036143 11 LLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLDTF 90 (355)
Q Consensus 11 l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L 90 (355)
..++++|++++|.++.+|..++++.+|++|++++|.+..+|..+ +++++|++|+++++... .++..++.+++|++|
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~-~~l~~L~~L~Ls~n~l~---~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTM-QQFAGLETLTLARNPLR---ALPASIASLNRLREL 155 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCG-GGGTTCSEEEEESCCCC---CCCGGGGGCTTCCEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHH-hccCCCCEEECCCCccc---cCcHHHhcCcCCCEE
Confidence 47899999999999999999999999999999999999999998 99999999999987552 344489999999999
Q ss_pred EEEeccCcc-ccccccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCccCCCccccCchhHHHH
Q 036143 91 VGYFSKLDD-FNTYVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICEREGVTIVLPKDVQGL 169 (355)
Q Consensus 91 ~l~~~~~~~-~~~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~~~~~~~~~~~L~~L 169 (355)
++..+.... .+..+... . .. ..+.....++.+.+.++.+..
T Consensus 156 ~L~~n~~~~~~p~~~~~~------~------------~~-----~~~~~l~~L~~L~L~~n~l~~--------------- 197 (328)
T 4fcg_A 156 SIRACPELTELPEPLAST------D------------AS-----GEHQGLVNLQSLRLEWTGIRS--------------- 197 (328)
T ss_dssp EEEEETTCCCCCSCSEEE------C-------------C-----CCEEESTTCCEEEEEEECCCC---------------
T ss_pred ECCCCCCccccChhHhhc------c------------ch-----hhhccCCCCCEEECcCCCcCc---------------
Confidence 998765433 22222220 0 00 001112234444554444331
Q ss_pred HhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCceecccCcchhhh
Q 036143 170 IMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVNDEETQK 249 (355)
Q Consensus 170 l~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~ 249 (355)
++.. .+.+++|++|+++++ .++.+.. .+..+++|+.|++++|.....++.
T Consensus 198 ----------lp~~---------l~~l~~L~~L~L~~N-~l~~l~~--~l~~l~~L~~L~Ls~n~~~~~~p~-------- 247 (328)
T 4fcg_A 198 ----------LPAS---------IANLQNLKSLKIRNS-PLSALGP--AIHHLPKLEELDLRGCTALRNYPP-------- 247 (328)
T ss_dssp ----------CCGG---------GGGCTTCCEEEEESS-CCCCCCG--GGGGCTTCCEEECTTCTTCCBCCC--------
T ss_pred ----------chHh---------hcCCCCCCEEEccCC-CCCcCch--hhccCCCCCEEECcCCcchhhhHH--------
Confidence 1110 146789999999999 4555443 278899999999999988887775
Q ss_pred hcccccccccCcccceeecccccccceecCCCceecCCCceEEEEcCCCCccccccCCCCCCCCCCCCCCCCeeEEEehh
Q 036143 250 ELGISAITITLPRLKKLWLSFLPELKSVCSDNAVLICNSLQEIQITPSCPKLKRLSLRLPPLDNGQPSPSPALEVIKIRK 329 (355)
Q Consensus 250 ~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~~~L~~L~i~~~c~~L~~lp~~~~~l~~~~~~~~~~L~~l~~~~ 329 (355)
.+..+++|++|++.+|...+.++. ....+++|++|++. +|+.++.+|.++..++ +|+.+++..
T Consensus 248 ------~~~~l~~L~~L~L~~n~~~~~~p~--~~~~l~~L~~L~L~-~n~~~~~iP~~l~~L~--------~L~~l~l~~ 310 (328)
T 4fcg_A 248 ------IFGGRAPLKRLILKDCSNLLTLPL--DIHRLTQLEKLDLR-GCVNLSRLPSLIAQLP--------ANCIILVPP 310 (328)
T ss_dssp ------CTTCCCCCCEEECTTCTTCCBCCT--TGGGCTTCCEEECT-TCTTCCCCCGGGGGSC--------TTCEEECCG
T ss_pred ------HhcCCCCCCEEECCCCCchhhcch--hhhcCCCCCEEeCC-CCCchhhccHHHhhcc--------CceEEeCCH
Confidence 778999999999999988888876 34446799999999 9999999999998877 999999988
Q ss_pred hhhcccccCc
Q 036143 330 ELWESLEWDQ 339 (355)
Q Consensus 330 ~~~~~l~~~~ 339 (355)
+..+.+.+..
T Consensus 311 ~~~~~l~~~~ 320 (328)
T 4fcg_A 311 HLQAQLDQHR 320 (328)
T ss_dssp GGSCC-----
T ss_pred HHHHHHhhhh
Confidence 8877776543
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.83 E-value=5e-20 Score=166.82 Aligned_cols=208 Identities=17% Similarity=0.210 Sum_probs=152.5
Q ss_pred CCCCCC-ccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhH
Q 036143 1 RLERVP-SLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQE 79 (355)
Q Consensus 1 ~l~~lP-~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~ 79 (355)
+++.+| .++++++|++|++++|.+..+|..++++.+|++|++++|.+..+|..+ +++++|++|++++|..... ...
T Consensus 92 ~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l-~~l~~L~~L~L~~n~~~~~-~p~- 168 (328)
T 4fcg_A 92 PLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASI-ASLNRLRELSIRACPELTE-LPE- 168 (328)
T ss_dssp CCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGG-GGCTTCCEEEEEEETTCCC-CCS-
T ss_pred CchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHH-hcCcCCCEEECCCCCCccc-cCh-
Confidence 367899 899999999999999999999999999999999999999999999998 9999999999998754322 222
Q ss_pred hh---------cccccccceEEEeccCccccccccccccccccccccccceeEeecCCCccccceecccCCccEEEEecc
Q 036143 80 AA---------RSSDRLDTFVGYFSKLDDFNTYVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGC 150 (355)
Q Consensus 80 ~l---------~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l 150 (355)
.+ +.+++|++|++..+....++..++.++.|+.|. +.++
T Consensus 169 ~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~--------------------------------L~~N 216 (328)
T 4fcg_A 169 PLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLK--------------------------------IRNS 216 (328)
T ss_dssp CSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEE--------------------------------EESS
T ss_pred hHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEE--------------------------------ccCC
Confidence 34 459999999999887776666666666666555 2222
Q ss_pred CCccCCCccccCchhHHHHHhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEE
Q 036143 151 KICEREGVTIVLPKDVQGLIMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVV 230 (355)
Q Consensus 151 ~~~~~~~~~~~~~~~L~~Ll~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l 230 (355)
.+.+. +.. ...+++|++|++++|.....+.. .+..+++|+.|++
T Consensus 217 ~l~~l-------------------------~~~---------l~~l~~L~~L~Ls~n~~~~~~p~--~~~~l~~L~~L~L 260 (328)
T 4fcg_A 217 PLSAL-------------------------GPA---------IHHLPKLEELDLRGCTALRNYPP--IFGGRAPLKRLIL 260 (328)
T ss_dssp CCCCC-------------------------CGG---------GGGCTTCCEEECTTCTTCCBCCC--CTTCCCCCCEEEC
T ss_pred CCCcC-------------------------chh---------hccCCCCCEEECcCCcchhhhHH--HhcCCCCCCEEEC
Confidence 22210 000 03566778888888755554322 2567788888888
Q ss_pred ecCCCCceecccCcchhhhhcccccccccCcccceeecccccccceecCCCceecCCCceEEEEc
Q 036143 231 QSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAVLICNSLQEIQIT 295 (355)
Q Consensus 231 ~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~~~L~~L~i~ 295 (355)
++|...+.++. .+..+++|++|++++|+.++.++. ....+++|+.+.+.
T Consensus 261 ~~n~~~~~~p~--------------~~~~l~~L~~L~L~~n~~~~~iP~--~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 261 KDCSNLLTLPL--------------DIHRLTQLEKLDLRGCVNLSRLPS--LIAQLPANCIILVP 309 (328)
T ss_dssp TTCTTCCBCCT--------------TGGGCTTCCEEECTTCTTCCCCCG--GGGGSCTTCEEECC
T ss_pred CCCCchhhcch--------------hhhcCCCCCEEeCCCCCchhhccH--HHhhccCceEEeCC
Confidence 87777777765 566788888888888877777776 33345577777764
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.3e-20 Score=176.59 Aligned_cols=275 Identities=17% Similarity=0.105 Sum_probs=165.3
Q ss_pred ccccccccceecCCCcccccc-CcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccc
Q 036143 7 SLAKLLALQCLDLEYTAIKEV-PEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSD 85 (355)
Q Consensus 7 ~i~~l~~L~~L~L~~~~~~~l-P~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~ 85 (355)
.+.++++|++|++++|.++.+ |..++++.+|++|++++|.+..+|.+.|+++++|++|+++++.. ...... .+..++
T Consensus 51 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i-~~~~~~-~~~~l~ 128 (477)
T 2id5_A 51 EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKI-VILLDY-MFQDLY 128 (477)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCC-CEECTT-TTTTCT
T ss_pred HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCcc-ccCChh-Hccccc
Confidence 566666666666666666654 55666666677777766666666665446666777777666433 222222 566667
Q ss_pred cccceEEEeccCcccc-ccccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCccCCCccccCch
Q 036143 86 RLDTFVGYFSKLDDFN-TYVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICEREGVTIVLPK 164 (355)
Q Consensus 86 ~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~~~~~~~~~~ 164 (355)
+|++|++..+...... ..+..++.|+.|. +....+.+.. ...+.....++.+.+.++.+.......+..++
T Consensus 129 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~-------l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~ 200 (477)
T 2id5_A 129 NLKSLEVGDNDLVYISHRAFSGLNSLEQLT-------LEKCNLTSIP-TEALSHLHGLIVLRLRHLNINAIRDYSFKRLY 200 (477)
T ss_dssp TCCEEEECCTTCCEECTTSSTTCTTCCEEE-------EESCCCSSCC-HHHHTTCTTCCEEEEESCCCCEECTTCSCSCT
T ss_pred cCCEEECCCCccceeChhhccCCCCCCEEE-------CCCCcCcccC-hhHhcccCCCcEEeCCCCcCcEeChhhcccCc
Confidence 7777776655554432 3355555555555 2222222211 11223344566667777666554433334455
Q ss_pred hHHHH-HhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCceecccC
Q 036143 165 DVQGL-IMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVN 243 (355)
Q Consensus 165 ~L~~L-l~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~~~~ 243 (355)
.|+.| +.++ .....++... ....+|++|+++++ +++.+. ...+..+++|+.|+++++. +..+..
T Consensus 201 ~L~~L~l~~~-~~~~~~~~~~---------~~~~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n~-l~~~~~-- 265 (477)
T 2id5_A 201 RLKVLEISHW-PYLDTMTPNC---------LYGLNLTSLSITHC-NLTAVP-YLAVRHLVYLRFLNLSYNP-ISTIEG-- 265 (477)
T ss_dssp TCCEEEEECC-TTCCEECTTT---------TTTCCCSEEEEESS-CCCSCC-HHHHTTCTTCCEEECCSSC-CCEECT--
T ss_pred ccceeeCCCC-ccccccCccc---------ccCccccEEECcCC-cccccC-HHHhcCccccCeeECCCCc-CCccCh--
Confidence 56665 5554 3333332211 22348899999988 566543 3347889999999999765 444432
Q ss_pred cchhhhhcccccccccCcccceeecccccccceecCCCcee-cCCCceEEEEcCCCCccccccCC-CCCCCCCCCCCCCC
Q 036143 244 DEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAVL-ICNSLQEIQITPSCPKLKRLSLR-LPPLDNGQPSPSPA 321 (355)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l-~~~~L~~L~i~~~c~~L~~lp~~-~~~l~~~~~~~~~~ 321 (355)
..+..+++|++|++.++ .+..+.. .++ .+++|++|++. +| ++..+|.. +..+. +
T Consensus 266 -----------~~~~~l~~L~~L~L~~n-~l~~~~~--~~~~~l~~L~~L~L~-~N-~l~~~~~~~~~~l~--------~ 321 (477)
T 2id5_A 266 -----------SMLHELLRLQEIQLVGG-QLAVVEP--YAFRGLNYLRVLNVS-GN-QLTTLEESVFHSVG--------N 321 (477)
T ss_dssp -----------TSCTTCTTCCEEECCSS-CCSEECT--TTBTTCTTCCEEECC-SS-CCSCCCGGGBSCGG--------G
T ss_pred -----------hhccccccCCEEECCCC-ccceECH--HHhcCcccCCEEECC-CC-cCceeCHhHcCCCc--------c
Confidence 15678899999999987 4555544 233 36799999997 65 77777754 34443 8
Q ss_pred eeEEEehhh
Q 036143 322 LEVIKIRKE 330 (355)
Q Consensus 322 L~~l~~~~~ 330 (355)
|+.+++..+
T Consensus 322 L~~L~l~~N 330 (477)
T 2id5_A 322 LETLILDSN 330 (477)
T ss_dssp CCEEECCSS
T ss_pred cCEEEccCC
Confidence 999988433
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.1e-20 Score=168.60 Aligned_cols=106 Identities=16% Similarity=0.164 Sum_probs=54.4
Q ss_pred ccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCceecccCcchhhhhcccccccccCcccceeecccccc
Q 036143 194 AKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPE 273 (355)
Q Consensus 194 ~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 273 (355)
..+++|++|++++| +++...+ +..+++|+.|+++++. +..+. .+..+++|++|+++++ .
T Consensus 218 ~~~~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~l~~n~-l~~~~---------------~~~~l~~L~~L~l~~n-~ 276 (347)
T 4fmz_A 218 ANMTRLNSLKIGNN-KITDLSP---LANLSQLTWLEIGTNQ-ISDIN---------------AVKDLTKLKMLNVGSN-Q 276 (347)
T ss_dssp GGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSSC-CCCCG---------------GGTTCTTCCEEECCSS-C
T ss_pred hcCCcCCEEEccCC-ccCCCcc---hhcCCCCCEEECCCCc-cCCCh---------------hHhcCCCcCEEEccCC-c
Confidence 35566677777666 3444332 4566666777766542 22221 3456666666666665 3
Q ss_pred cceecCCCceecCCCceEEEEcCCCCccccccCCCCCCCCCCCCCCCCeeEEEehhhhh
Q 036143 274 LKSVCSDNAVLICNSLQEIQITPSCPKLKRLSLRLPPLDNGQPSPSPALEVIKIRKELW 332 (355)
Q Consensus 274 l~~i~~~~~~l~~~~L~~L~i~~~c~~L~~lp~~~~~l~~~~~~~~~~L~~l~~~~~~~ 332 (355)
+..+.. ...+++|++|++. +|.--...|..+..+. +|+.+++..+.+
T Consensus 277 l~~~~~---~~~l~~L~~L~L~-~n~l~~~~~~~l~~l~--------~L~~L~L~~n~l 323 (347)
T 4fmz_A 277 ISDISV---LNNLSQLNSLFLN-NNQLGNEDMEVIGGLT--------NLTTLFLSQNHI 323 (347)
T ss_dssp CCCCGG---GGGCTTCSEEECC-SSCCCGGGHHHHHTCT--------TCSEEECCSSSC
T ss_pred cCCChh---hcCCCCCCEEECc-CCcCCCcChhHhhccc--------cCCEEEccCCcc
Confidence 333311 1224566666666 5543333333333332 666666644433
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.82 E-value=2e-20 Score=173.50 Aligned_cols=271 Identities=16% Similarity=0.171 Sum_probs=141.0
Q ss_pred CCCC--ccccccccceecCCCccccccCc-ccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhH
Q 036143 3 ERVP--SLAKLLALQCLDLEYTAIKEVPE-GMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQE 79 (355)
Q Consensus 3 ~~lP--~i~~l~~L~~L~L~~~~~~~lP~-~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~ 79 (355)
+.+| .+..+++|++|++++|.++.+|. .++.+.+|++|++++|.+..+|...++++++|++|+++++... .++.
T Consensus 58 ~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~---~l~~ 134 (390)
T 3o6n_A 58 RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS---SLPR 134 (390)
T ss_dssp SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC---CCCT
T ss_pred hhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC---cCCH
Confidence 3455 25667777777777777766643 5677777777777777777766554477777777777765431 2221
Q ss_pred -hhcccccccceEEEeccCcccc-ccccccccccccccccccceeEeecCCCccc---------------cceecccCCc
Q 036143 80 -AARSSDRLDTFVGYFSKLDDFN-TYVKSSDGQRSKHFHFQVSTVYNGSAANTRF---------------YSFLRTREAN 142 (355)
Q Consensus 80 -~l~~L~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~---------------~~~l~~~~~~ 142 (355)
.++.+++|++|++..+...... ..++.++.|+.|....+ .+.+... ...+.....+
T Consensus 135 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-------~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L 207 (390)
T 3o6n_A 135 GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-------RLTHVDLSLIPSLFHANVSYNLLSTLAIPIAV 207 (390)
T ss_dssp TTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS-------CCSBCCGGGCTTCSEEECCSSCCSEEECCSSC
T ss_pred HHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCC-------cCCccccccccccceeecccccccccCCCCcc
Confidence 3466777777777666655443 23555666666552211 1111100 0000001112
Q ss_pred cEEEEeccCCccCCCccccCchhHHHH-HhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhh
Q 036143 143 KSVCFYGCKICEREGVTIVLPKDVQGL-IMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAA 221 (355)
Q Consensus 143 ~~~~L~~l~~~~~~~~~~~~~~~L~~L-l~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~ 221 (355)
+.+.+.++.+.... ...++.|+.| +.++ .++.+ + ....+++|++|+++++ .++...+.. +..
T Consensus 208 ~~L~l~~n~l~~~~---~~~~~~L~~L~l~~n--~l~~~---~-------~l~~l~~L~~L~Ls~n-~l~~~~~~~-~~~ 270 (390)
T 3o6n_A 208 EELDASHNSINVVR---GPVNVELTILKLQHN--NLTDT---A-------WLLNYPGLVEVDLSYN-ELEKIMYHP-FVK 270 (390)
T ss_dssp SEEECCSSCCCEEE---CCCCSSCCEEECCSS--CCCCC---G-------GGGGCTTCSEEECCSS-CCCEEESGG-GTT
T ss_pred eEEECCCCeeeecc---ccccccccEEECCCC--CCccc---H-------HHcCCCCccEEECCCC-cCCCcChhH-ccc
Confidence 22222222222110 0112233333 3332 11111 1 1135666777777766 444433222 556
Q ss_pred cCCCCeEEEecCCCCceecccCcchhhhhcccccccccCcccceeecccccccceecCCCceecCCCceEEEEcCCCCcc
Q 036143 222 LQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAVLICNSLQEIQITPSCPKL 301 (355)
Q Consensus 222 L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~~~L~~L~i~~~c~~L 301 (355)
+++|+.|+++++ .+..++. ....+++|++|+++++ .+..++. ....+++|++|++. +| .+
T Consensus 271 l~~L~~L~L~~n-~l~~~~~--------------~~~~l~~L~~L~L~~n-~l~~~~~--~~~~l~~L~~L~L~-~N-~i 330 (390)
T 3o6n_A 271 MQRLERLYISNN-RLVALNL--------------YGQPIPTLKVLDLSHN-HLLHVER--NQPQFDRLENLYLD-HN-SI 330 (390)
T ss_dssp CSSCCEEECCSS-CCCEEEC--------------SSSCCTTCCEEECCSS-CCCCCGG--GHHHHTTCSEEECC-SS-CC
T ss_pred cccCCEEECCCC-cCcccCc--------------ccCCCCCCCEEECCCC-cceecCc--cccccCcCCEEECC-CC-cc
Confidence 677777777653 3444433 3456777777777776 3555544 22335678888886 55 35
Q ss_pred ccccCCCCCCCCCCCCCCCCeeEEEehhh
Q 036143 302 KRLSLRLPPLDNGQPSPSPALEVIKIRKE 330 (355)
Q Consensus 302 ~~lp~~~~~l~~~~~~~~~~L~~l~~~~~ 330 (355)
..+| + ..+++|+.+++..+
T Consensus 331 ~~~~--~--------~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 331 VTLK--L--------STHHTLKNLTLSHN 349 (390)
T ss_dssp CCCC--C--------CTTCCCSEEECCSS
T ss_pred ceeC--c--------hhhccCCEEEcCCC
Confidence 5554 2 33558999998433
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-19 Score=168.19 Aligned_cols=258 Identities=13% Similarity=0.137 Sum_probs=174.2
Q ss_pred CCCCC--ccccccccceecCCCccccccC-cccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchh
Q 036143 2 LERVP--SLAKLLALQCLDLEYTAIKEVP-EGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQ 78 (355)
Q Consensus 2 l~~lP--~i~~l~~L~~L~L~~~~~~~lP-~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~ 78 (355)
++.+| .+..+++|++|++++|.++.+| ..++.+++|++|++++|.+..+|.++++++++|++|+++++.. ......
T Consensus 81 i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l-~~~~~~ 159 (390)
T 3o6n_A 81 IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL-ERIEDD 159 (390)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CBCCTT
T ss_pred ccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCcc-CccChh
Confidence 34454 7899999999999999999775 4579999999999999999999998779999999999998654 333333
Q ss_pred HhhcccccccceEEEeccCcccccccccccccccccccccc-------ceeEeecCCCccccce-ecccCCccEEEEecc
Q 036143 79 EAARSSDRLDTFVGYFSKLDDFNTYVKSSDGQRSKHFHFQV-------STVYNGSAANTRFYSF-LRTREANKSVCFYGC 150 (355)
Q Consensus 79 ~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~~~~~-------~~~~~~~~~~~~~~~~-l~~~~~~~~~~L~~l 150 (355)
.++.+++|++|++..+..... .++.++.|+.+....+. ..+....+++...... ......++.+.+.++
T Consensus 160 -~~~~l~~L~~L~l~~n~l~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n 236 (390)
T 3o6n_A 160 -TFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHN 236 (390)
T ss_dssp -TTSSCTTCCEEECCSSCCSBC--CGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSS
T ss_pred -hccCCCCCCEEECCCCcCCcc--ccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCC
Confidence 689999999999987776554 23444555544432221 0111222222221110 011234667777777
Q ss_pred CCccCCCccccCchhHHHH-HhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEE
Q 036143 151 KICEREGVTIVLPKDVQGL-IMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLV 229 (355)
Q Consensus 151 ~~~~~~~~~~~~~~~L~~L-l~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~ 229 (355)
.+.+.. .+..++.|+.| +.++ .++.+.. .....+++|++|+++++ +++.+... ...+++|+.|+
T Consensus 237 ~l~~~~--~l~~l~~L~~L~Ls~n--~l~~~~~--------~~~~~l~~L~~L~L~~n-~l~~~~~~--~~~l~~L~~L~ 301 (390)
T 3o6n_A 237 NLTDTA--WLLNYPGLVEVDLSYN--ELEKIMY--------HPFVKMQRLERLYISNN-RLVALNLY--GQPIPTLKVLD 301 (390)
T ss_dssp CCCCCG--GGGGCTTCSEEECCSS--CCCEEES--------GGGTTCSSCCEEECCSS-CCCEEECS--SSCCTTCCEEE
T ss_pred CCcccH--HHcCCCCccEEECCCC--cCCCcCh--------hHccccccCCEEECCCC-cCcccCcc--cCCCCCCCEEE
Confidence 776542 22445567777 6665 2222211 01146889999999998 56654332 36789999999
Q ss_pred EecCCCCceecccCcchhhhhcccccccccCcccceeecccccccceecCCCceecCCCceEEEEcCCCC
Q 036143 230 VQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAVLICNSLQEIQITPSCP 299 (355)
Q Consensus 230 l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~~~L~~L~i~~~c~ 299 (355)
++++ .+..++. .+..+++|++|++.+++ +..+.. + .+++|++|++. +++
T Consensus 302 L~~n-~l~~~~~--------------~~~~l~~L~~L~L~~N~-i~~~~~--~--~~~~L~~L~l~-~N~ 350 (390)
T 3o6n_A 302 LSHN-HLLHVER--------------NQPQFDRLENLYLDHNS-IVTLKL--S--THHTLKNLTLS-HND 350 (390)
T ss_dssp CCSS-CCCCCGG--------------GHHHHTTCSEEECCSSC-CCCCCC--C--TTCCCSEEECC-SSC
T ss_pred CCCC-cceecCc--------------cccccCcCCEEECCCCc-cceeCc--h--hhccCCEEEcC-CCC
Confidence 9986 4556654 56789999999999985 555532 2 35699999997 654
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.81 E-value=9.9e-20 Score=166.03 Aligned_cols=276 Identities=16% Similarity=0.169 Sum_probs=172.8
Q ss_pred CCCCCccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhh
Q 036143 2 LERVPSLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAA 81 (355)
Q Consensus 2 l~~lP~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l 81 (355)
++.+|.+..+++|++|++++|.++.+|. ++.+++|++|++++|.+..+|. + +++++|++|+++++.. ..++ .+
T Consensus 56 i~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~-~-~~l~~L~~L~l~~n~i---~~~~-~~ 128 (347)
T 4fmz_A 56 VASIQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISA-L-QNLTNLRELYLNEDNI---SDIS-PL 128 (347)
T ss_dssp CCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-G-TTCTTCSEEECTTSCC---CCCG-GG
T ss_pred cccchhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCchH-H-cCCCcCCEEECcCCcc---cCch-hh
Confidence 4567788889999999999998888876 8899999999999998888763 5 8999999999988654 3344 47
Q ss_pred cccccccceEEEeccCcccccccccccccccccccccc----------ceeEeecCCCccc--cceecccCCccEEEEec
Q 036143 82 RSSDRLDTFVGYFSKLDDFNTYVKSSDGQRSKHFHFQV----------STVYNGSAANTRF--YSFLRTREANKSVCFYG 149 (355)
Q Consensus 82 ~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~~~~~----------~~~~~~~~~~~~~--~~~l~~~~~~~~~~L~~ 149 (355)
..+++|++|++..+........+..++.|+.|....+. ..+....++++.. ...+.....++.+.+.+
T Consensus 129 ~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~ 208 (347)
T 4fmz_A 129 ANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYV 208 (347)
T ss_dssp TTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCS
T ss_pred ccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccccccccCCCccceeeccc
Confidence 78888888888666443333345555555555521110 0011111111110 00112222333444444
Q ss_pred cCCccCCCccccCchhHHHH-HhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeE
Q 036143 150 CKICEREGVTIVLPKDVQGL-IMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFL 228 (355)
Q Consensus 150 l~~~~~~~~~~~~~~~L~~L-l~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L 228 (355)
+.+..... +..++.|+.| +.++ .++.++. ...+++|++|+++++ .++.+. .+..+++|+.|
T Consensus 209 n~l~~~~~--~~~~~~L~~L~l~~n--~l~~~~~----------~~~l~~L~~L~l~~n-~l~~~~---~~~~l~~L~~L 270 (347)
T 4fmz_A 209 NQITDITP--VANMTRLNSLKIGNN--KITDLSP----------LANLSQLTWLEIGTN-QISDIN---AVKDLTKLKML 270 (347)
T ss_dssp SCCCCCGG--GGGCTTCCEEECCSS--CCCCCGG----------GTTCTTCCEEECCSS-CCCCCG---GGTTCTTCCEE
T ss_pred CCCCCCch--hhcCCcCCEEEccCC--ccCCCcc----------hhcCCCCCEEECCCC-ccCCCh---hHhcCCCcCEE
Confidence 44433222 2333455555 5544 2222221 257889999999999 566543 26789999999
Q ss_pred EEecCCCCceecccCcchhhhhcccccccccCcccceeecccccccceecCCCceecCCCceEEEEcCCCCccccccCCC
Q 036143 229 VVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAVLICNSLQEIQITPSCPKLKRLSLRL 308 (355)
Q Consensus 229 ~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~~~L~~L~i~~~c~~L~~lp~~~ 308 (355)
++++| .+..+. .+..+++|++|++++|. +...... ....+++|++|++. +|+ +..++. +
T Consensus 271 ~l~~n-~l~~~~---------------~~~~l~~L~~L~L~~n~-l~~~~~~-~l~~l~~L~~L~L~-~n~-l~~~~~-~ 329 (347)
T 4fmz_A 271 NVGSN-QISDIS---------------VLNNLSQLNSLFLNNNQ-LGNEDME-VIGGLTNLTTLFLS-QNH-ITDIRP-L 329 (347)
T ss_dssp ECCSS-CCCCCG---------------GGGGCTTCSEEECCSSC-CCGGGHH-HHHTCTTCSEEECC-SSS-CCCCGG-G
T ss_pred EccCC-ccCCCh---------------hhcCCCCCCEEECcCCc-CCCcChh-HhhccccCCEEEcc-CCc-cccccC-h
Confidence 99986 444442 56789999999999985 3333220 12236799999998 886 666544 4
Q ss_pred CCCCCCCCCCCCCeeEEEehhhh
Q 036143 309 PPLDNGQPSPSPALEVIKIRKEL 331 (355)
Q Consensus 309 ~~l~~~~~~~~~~L~~l~~~~~~ 331 (355)
..+ ++|+.+++..+.
T Consensus 330 ~~l--------~~L~~L~l~~N~ 344 (347)
T 4fmz_A 330 ASL--------SKMDSADFANQV 344 (347)
T ss_dssp GGC--------TTCSEESSSCC-
T ss_pred hhh--------hccceeehhhhc
Confidence 443 489999885443
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.80 E-value=8.5e-20 Score=178.50 Aligned_cols=272 Identities=15% Similarity=0.140 Sum_probs=152.9
Q ss_pred CCCC--ccccccccceecCCCccccccC-cccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhH
Q 036143 3 ERVP--SLAKLLALQCLDLEYTAIKEVP-EGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQE 79 (355)
Q Consensus 3 ~~lP--~i~~l~~L~~L~L~~~~~~~lP-~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~ 79 (355)
..+| .+..+++|++|++++|.+..+| ..++.+.+|++|++++|.+..+|...|+++++|++|++++|.. ......
T Consensus 64 ~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~- 141 (597)
T 3oja_B 64 RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL-SSLPRG- 141 (597)
T ss_dssp SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTT-
T ss_pred CCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCC-CCCCHH-
Confidence 3455 3567788888888888877664 3678888888888888888877776558888888888887643 222222
Q ss_pred hhcccccccceEEEeccCccccc-cccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCccCC--
Q 036143 80 AARSSDRLDTFVGYFSKLDDFNT-YVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICERE-- 156 (355)
Q Consensus 80 ~l~~L~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~~-- 156 (355)
.++.+++|++|++..+.+..... .++.++.|+.|....+ .+.+.. +.....+..+.+.++.+.+..
T Consensus 142 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-------~l~~~~----~~~l~~L~~L~l~~n~l~~l~~~ 210 (597)
T 3oja_B 142 IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-------RLTHVD----LSLIPSLFHANVSYNLLSTLAIP 210 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS-------CCSBCC----GGGCTTCSEEECCSSCCSEEECC
T ss_pred HhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC-------CCCCcC----hhhhhhhhhhhcccCccccccCC
Confidence 35778888888887776665443 4666677776662221 111110 011112222333322222100
Q ss_pred --------------CccccCchhHHHH-HhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhh
Q 036143 157 --------------GVTIVLPKDVQGL-IMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAA 221 (355)
Q Consensus 157 --------------~~~~~~~~~L~~L-l~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~ 221 (355)
.+....+++|+.| +.++ .++. .+ ....+++|+.|+++++ .++...+.. +..
T Consensus 211 ~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n--~l~~---~~-------~l~~l~~L~~L~Ls~N-~l~~~~~~~-~~~ 276 (597)
T 3oja_B 211 IAVEELDASHNSINVVRGPVNVELTILKLQHN--NLTD---TA-------WLLNYPGLVEVDLSYN-ELEKIMYHP-FVK 276 (597)
T ss_dssp TTCSEEECCSSCCCEEECSCCSCCCEEECCSS--CCCC---CG-------GGGGCTTCSEEECCSS-CCCEEESGG-GTT
T ss_pred chhheeeccCCcccccccccCCCCCEEECCCC--CCCC---Ch-------hhccCCCCCEEECCCC-ccCCCCHHH-hcC
Confidence 0000112233333 3332 1111 11 1235667777777776 444433322 566
Q ss_pred cCCCCeEEEecCCCCceecccCcchhhhhcccccccccCcccceeecccccccceecCCCceecCCCceEEEEcCCCCcc
Q 036143 222 LQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAVLICNSLQEIQITPSCPKL 301 (355)
Q Consensus 222 L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~~~L~~L~i~~~c~~L 301 (355)
+++|+.|+++++ .+..++. ....+|+|++|+++++. +..++. ....+++|++|++. +| .+
T Consensus 277 l~~L~~L~Ls~N-~l~~l~~--------------~~~~l~~L~~L~Ls~N~-l~~i~~--~~~~l~~L~~L~L~-~N-~l 336 (597)
T 3oja_B 277 MQRLERLYISNN-RLVALNL--------------YGQPIPTLKVLDLSHNH-LLHVER--NQPQFDRLENLYLD-HN-SI 336 (597)
T ss_dssp CSSCCEEECTTS-CCCEEEC--------------SSSCCTTCCEEECCSSC-CCCCGG--GHHHHTTCSEEECC-SS-CC
T ss_pred ccCCCEEECCCC-CCCCCCc--------------ccccCCCCcEEECCCCC-CCccCc--ccccCCCCCEEECC-CC-CC
Confidence 777777777753 3444443 44567788888887763 445544 23335688888886 55 35
Q ss_pred ccccCCCCCCCCCCCCCCCCeeEEEehhhh
Q 036143 302 KRLSLRLPPLDNGQPSPSPALEVIKIRKEL 331 (355)
Q Consensus 302 ~~lp~~~~~l~~~~~~~~~~L~~l~~~~~~ 331 (355)
..+| + ..+++|+.|++..+-
T Consensus 337 ~~~~--~--------~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 337 VTLK--L--------STHHTLKNLTLSHND 356 (597)
T ss_dssp CCCC--C--------CTTCCCSEEECCSSC
T ss_pred CCcC--h--------hhcCCCCEEEeeCCC
Confidence 5554 2 335599999984433
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=3.9e-19 Score=167.99 Aligned_cols=109 Identities=19% Similarity=0.230 Sum_probs=70.0
Q ss_pred ccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCceecccCcchhhhhcccccccccCcccceeecccccc
Q 036143 194 AKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPE 273 (355)
Q Consensus 194 ~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 273 (355)
..+++|++|+++++ .++...+.. +..+++|++|+++++.. ..+.. ..+..+++|++|+++++.
T Consensus 296 ~~l~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~Ls~N~l-~~~~~-------------~~~~~l~~L~~L~Ls~N~- 358 (455)
T 3v47_A 296 SHFTDLEQLTLAQN-EINKIDDNA-FWGLTHLLKLNLSQNFL-GSIDS-------------RMFENLDKLEVLDLSYNH- 358 (455)
T ss_dssp TTCTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECCSSCC-CEECG-------------GGGTTCTTCCEEECCSSC-
T ss_pred ccCCCCCEEECCCC-cccccChhH-hcCcccCCEEECCCCcc-CCcCh-------------hHhcCcccCCEEECCCCc-
Confidence 35667777777777 444433322 56778888888876543 33321 156678899999998874
Q ss_pred cceecCCCceecCCCceEEEEcCCCCccccccCCC-CCCCCCCCCCCCCeeEEEehhh
Q 036143 274 LKSVCSDNAVLICNSLQEIQITPSCPKLKRLSLRL-PPLDNGQPSPSPALEVIKIRKE 330 (355)
Q Consensus 274 l~~i~~~~~~l~~~~L~~L~i~~~c~~L~~lp~~~-~~l~~~~~~~~~~L~~l~~~~~ 330 (355)
+..+... .-..+++|++|++. + .+++.+|... ..++ +|+.+++..+
T Consensus 359 l~~~~~~-~~~~l~~L~~L~L~-~-N~l~~~~~~~~~~l~--------~L~~L~l~~N 405 (455)
T 3v47_A 359 IRALGDQ-SFLGLPNLKELALD-T-NQLKSVPDGIFDRLT--------SLQKIWLHTN 405 (455)
T ss_dssp CCEECTT-TTTTCTTCCEEECC-S-SCCSCCCTTTTTTCT--------TCCEEECCSS
T ss_pred ccccChh-hccccccccEEECC-C-CccccCCHhHhccCC--------cccEEEccCC
Confidence 5555331 12236799999996 5 4677777543 4444 9999999433
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.4e-19 Score=172.46 Aligned_cols=88 Identities=16% Similarity=0.149 Sum_probs=54.5
Q ss_pred ccccccccceecCCCcccccc-CcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccc
Q 036143 7 SLAKLLALQCLDLEYTAIKEV-PEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSD 85 (355)
Q Consensus 7 ~i~~l~~L~~L~L~~~~~~~l-P~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~ 85 (355)
.+..+++|++|++++|.++.+ |..++++++|++|++++|.+..+|.. .+++|++|+++++.. ....++..++.++
T Consensus 40 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~L~~N~l-~~~~~p~~~~~l~ 115 (520)
T 2z7x_B 40 DILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH---PTVNLKHLDLSFNAF-DALPICKEFGNMS 115 (520)
T ss_dssp HHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC---CCCCCSEEECCSSCC-SSCCCCGGGGGCT
T ss_pred hccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc---ccCCccEEeccCCcc-ccccchhhhccCC
Confidence 566666777777777666655 55666677777777777666666653 566666666666543 2222222667777
Q ss_pred cccceEEEeccCc
Q 036143 86 RLDTFVGYFSKLD 98 (355)
Q Consensus 86 ~L~~L~l~~~~~~ 98 (355)
+|++|++..+...
T Consensus 116 ~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 116 QLKFLGLSTTHLE 128 (520)
T ss_dssp TCCEEEEEESSCC
T ss_pred cceEEEecCcccc
Confidence 7777777665543
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=3.2e-19 Score=174.72 Aligned_cols=285 Identities=14% Similarity=0.108 Sum_probs=163.8
Q ss_pred CCCCC--ccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhH
Q 036143 2 LERVP--SLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQE 79 (355)
Q Consensus 2 l~~lP--~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~ 79 (355)
++.+| .++.+++|++|++++|.++.+|..++.+++|++|++++|.+..++...++++++|++|+++++.........
T Consensus 266 l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~- 344 (606)
T 3t6q_A 266 FFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTG- 344 (606)
T ss_dssp CSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSS-
T ss_pred cCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchh-
Confidence 34455 477778888888888877788877888888888888888777664433378888888888776432222222
Q ss_pred hhcccccccceEEEeccCccc---cccccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCccCC
Q 036143 80 AARSSDRLDTFVGYFSKLDDF---NTYVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICERE 156 (355)
Q Consensus 80 ~l~~L~~L~~L~l~~~~~~~~---~~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~~ 156 (355)
.++.+++|++|++..+..... ...++.++.|+.|....+ .+.+. .+..+.....++.+.+.++.+.+..
T Consensus 345 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-------~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~ 416 (606)
T 3t6q_A 345 CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN-------EPLSL-KTEAFKECPQLELLDLAFTRLKVKD 416 (606)
T ss_dssp TTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSC-------SCEEE-CTTTTTTCTTCSEEECTTCCEECCT
T ss_pred hhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCC-------cCCcC-CHHHhcCCccCCeEECCCCcCCCcc
Confidence 577778888888776665543 234556666666662111 11100 1112222344556666666554432
Q ss_pred Cc-cccCchhHHHH-HhhcccccccccccccccccccccccCCCccEEeeccCCCcccc-chHHHHhhcCCCCeEEEecC
Q 036143 157 GV-TIVLPKDVQGL-IMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKL-FSLQLLAALQNLEFLVVQSC 233 (355)
Q Consensus 157 ~~-~~~~~~~L~~L-l~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~l~~L~~L~~L~l~~~ 233 (355)
.. .+..++.|+.| +.++ .+..... . ....+++|++|+++++.-.... .....+..+++|+.|++++|
T Consensus 417 ~~~~~~~l~~L~~L~l~~n--~l~~~~~--~------~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n 486 (606)
T 3t6q_A 417 AQSPFQNLHLLKVLNLSHS--LLDISSE--Q------LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC 486 (606)
T ss_dssp TCCTTTTCTTCCEEECTTC--CCBTTCT--T------TTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS
T ss_pred cchhhhCcccCCEEECCCC--ccCCcCH--H------HHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC
Confidence 21 12344556666 6554 1111111 0 0145778888888888432211 11123667888888888876
Q ss_pred CCCceecccCcchhhhhcccccccccCcccceeecccccccceecCCCceecCCCceEEEEcCCCCccccc-cCCCCCCC
Q 036143 234 NRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAVLICNSLQEIQITPSCPKLKRL-SLRLPPLD 312 (355)
Q Consensus 234 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~~~L~~L~i~~~c~~L~~l-p~~~~~l~ 312 (355)
......+. .+..+++|++|+++++. +..+... ....+++| +|++. +| ++..+ |..+..++
T Consensus 487 ~l~~~~~~--------------~~~~l~~L~~L~Ls~N~-l~~~~~~-~l~~l~~L-~L~L~-~N-~l~~~~~~~~~~l~ 547 (606)
T 3t6q_A 487 DLSSIDQH--------------AFTSLKMMNHVDLSHNR-LTSSSIE-ALSHLKGI-YLNLA-SN-HISIILPSLLPILS 547 (606)
T ss_dssp CCCEECTT--------------TTTTCTTCCEEECCSSC-CCGGGGG-GGTTCCSC-EEECC-SS-CCCCCCGGGHHHHH
T ss_pred ccCccChh--------------hhccccCCCEEECCCCc-cCcCChh-HhCccccc-EEECc-CC-cccccCHhhcccCC
Confidence 54333333 56778888888888874 3333220 11225677 88886 55 44444 34444444
Q ss_pred CCCCCCCCCeeEEEehhhhh
Q 036143 313 NGQPSPSPALEVIKIRKELW 332 (355)
Q Consensus 313 ~~~~~~~~~L~~l~~~~~~~ 332 (355)
+|+.+++..+.|
T Consensus 548 --------~L~~L~l~~N~~ 559 (606)
T 3t6q_A 548 --------QQRTINLRQNPL 559 (606)
T ss_dssp --------TSSEEECTTCCE
T ss_pred --------CCCEEeCCCCCc
Confidence 888888844443
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.78 E-value=6.4e-19 Score=172.32 Aligned_cols=258 Identities=13% Similarity=0.153 Sum_probs=174.0
Q ss_pred CCCCC--ccccccccceecCCCccccccCcc-cccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchh
Q 036143 2 LERVP--SLAKLLALQCLDLEYTAIKEVPEG-MEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQ 78 (355)
Q Consensus 2 l~~lP--~i~~l~~L~~L~L~~~~~~~lP~~-i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~ 78 (355)
++.+| .++.+++|++|+|++|.+..+|.. ++.+++|++|++++|.+..+|.++|+++++|++|++++|.. ......
T Consensus 87 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l-~~~~~~ 165 (597)
T 3oja_B 87 IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL-ERIEDD 165 (597)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CBCCTT
T ss_pred CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcC-CCCChh
Confidence 34454 889999999999999999987654 69999999999999999999998779999999999998754 333334
Q ss_pred HhhcccccccceEEEeccCcccccccccccccccccccccc-c------eeEeecCCCcccccee-cccCCccEEEEecc
Q 036143 79 EAARSSDRLDTFVGYFSKLDDFNTYVKSSDGQRSKHFHFQV-S------TVYNGSAANTRFYSFL-RTREANKSVCFYGC 150 (355)
Q Consensus 79 ~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~~~~~-~------~~~~~~~~~~~~~~~l-~~~~~~~~~~L~~l 150 (355)
.++.+++|++|+++.+...... ++.++.|+.|....+. . .+....++++...... .....+..+.+.++
T Consensus 166 -~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n 242 (597)
T 3oja_B 166 -TFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHN 242 (597)
T ss_dssp -TTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSS
T ss_pred -hhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCC
Confidence 7899999999999877765542 4445555555432221 0 1111222222111100 01124566677777
Q ss_pred CCccCCCccccCchhHHHH-HhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEE
Q 036143 151 KICEREGVTIVLPKDVQGL-IMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLV 229 (355)
Q Consensus 151 ~~~~~~~~~~~~~~~L~~L-l~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~ 229 (355)
.+.+.. .+..++.|+.| +.++ .++.+.+ ...+.+++|+.|+++++ +++.+... ...+++|+.|+
T Consensus 243 ~l~~~~--~l~~l~~L~~L~Ls~N--~l~~~~~--------~~~~~l~~L~~L~Ls~N-~l~~l~~~--~~~l~~L~~L~ 307 (597)
T 3oja_B 243 NLTDTA--WLLNYPGLVEVDLSYN--ELEKIMY--------HPFVKMQRLERLYISNN-RLVALNLY--GQPIPTLKVLD 307 (597)
T ss_dssp CCCCCG--GGGGCTTCSEEECCSS--CCCEEES--------GGGTTCSSCCEEECTTS-CCCEEECS--SSCCTTCCEEE
T ss_pred CCCCCh--hhccCCCCCEEECCCC--ccCCCCH--------HHhcCccCCCEEECCCC-CCCCCCcc--cccCCCCcEEE
Confidence 766532 22445567666 6665 2222211 01157899999999998 56654332 35689999999
Q ss_pred EecCCCCceecccCcchhhhhcccccccccCcccceeecccccccceecCCCceecCCCceEEEEcCCCC
Q 036143 230 VQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAVLICNSLQEIQITPSCP 299 (355)
Q Consensus 230 l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~~~L~~L~i~~~c~ 299 (355)
++++. +..++. .+..+++|++|++.++. +..++. + .+++|++|++. +++
T Consensus 308 Ls~N~-l~~i~~--------------~~~~l~~L~~L~L~~N~-l~~~~~--~--~~~~L~~L~l~-~N~ 356 (597)
T 3oja_B 308 LSHNH-LLHVER--------------NQPQFDRLENLYLDHNS-IVTLKL--S--THHTLKNLTLS-HND 356 (597)
T ss_dssp CCSSC-CCCCGG--------------GHHHHTTCSEEECCSSC-CCCCCC--C--TTCCCSEEECC-SSC
T ss_pred CCCCC-CCccCc--------------ccccCCCCCEEECCCCC-CCCcCh--h--hcCCCCEEEee-CCC
Confidence 99864 446654 66789999999999985 555432 2 35699999998 765
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=9.3e-19 Score=169.97 Aligned_cols=93 Identities=15% Similarity=0.136 Sum_probs=60.6
Q ss_pred CCCCC--ccccccccceecCCCcccccc-CcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchh
Q 036143 2 LERVP--SLAKLLALQCLDLEYTAIKEV-PEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQ 78 (355)
Q Consensus 2 l~~lP--~i~~l~~L~~L~L~~~~~~~l-P~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~ 78 (355)
++.+| +++++++|++|++++|.++.+ |..++++++|++|++++|.+..+|.. .+++|++|+++++.. .....+
T Consensus 64 i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~Ls~N~l-~~l~~p 139 (562)
T 3a79_B 64 ISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC---PMASLRHLDLSFNDF-DVLPVC 139 (562)
T ss_dssp CCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC---CCTTCSEEECCSSCC-SBCCCC
T ss_pred ccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc---ccccCCEEECCCCCc-cccCch
Confidence 34454 667777777777777777655 55567777777777777777777664 677777777776543 222222
Q ss_pred HhhcccccccceEEEeccCc
Q 036143 79 EAARSSDRLDTFVGYFSKLD 98 (355)
Q Consensus 79 ~~l~~L~~L~~L~l~~~~~~ 98 (355)
..++++++|++|++..+...
T Consensus 140 ~~~~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 140 KEFGNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp GGGGGCTTCCEEEEECSBCC
T ss_pred HhhcccCcccEEecCCCccc
Confidence 26777777777777766543
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=7.4e-19 Score=170.04 Aligned_cols=90 Identities=21% Similarity=0.229 Sum_probs=52.2
Q ss_pred HhhcCCCCeEEEecCCCCceecccCcchhhhhcccccccccCcccceeecccccccceecCC-CceecCCCceEEEEcCC
Q 036143 219 LAALQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPELKSVCSD-NAVLICNSLQEIQITPS 297 (355)
Q Consensus 219 l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~-~~~l~~~~L~~L~i~~~ 297 (355)
+..+++|+.|+++++.....++.. ...++.+++|++|+++++. ++.+... .....+++|++|++. +
T Consensus 330 ~~~l~~L~~L~Ls~N~l~~~~~~~-----------~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~l~~L~~L~Ls-~ 396 (549)
T 2z81_A 330 SQHLKSLEFLDLSENLMVEEYLKN-----------SACKGAWPSLQTLVLSQNH-LRSMQKTGEILLTLKNLTSLDIS-R 396 (549)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHH-----------HTCTTSSTTCCEEECTTSC-CCCHHHHHHHGGGCTTCCEEECT-T
T ss_pred HhcCccccEEEccCCccccccccc-----------hhhhhccccCcEEEccCCc-ccccccchhhhhcCCCCCEEECC-C
Confidence 356788888888776544433210 0134577888888887763 4443210 011235688888886 6
Q ss_pred CCccccccCCCCCCCCCCCCCCCCeeEEEehhh
Q 036143 298 CPKLKRLSLRLPPLDNGQPSPSPALEVIKIRKE 330 (355)
Q Consensus 298 c~~L~~lp~~~~~l~~~~~~~~~~L~~l~~~~~ 330 (355)
| +++.+|..+..++ +|+.+++..+
T Consensus 397 N-~l~~lp~~~~~~~--------~L~~L~Ls~N 420 (549)
T 2z81_A 397 N-TFHPMPDSCQWPE--------KMRFLNLSST 420 (549)
T ss_dssp C-CCCCCCSCCCCCT--------TCCEEECTTS
T ss_pred C-CCccCChhhcccc--------cccEEECCCC
Confidence 5 6667777665443 5666665433
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.78 E-value=2e-18 Score=163.22 Aligned_cols=97 Identities=21% Similarity=0.216 Sum_probs=60.4
Q ss_pred ccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhccccc
Q 036143 7 SLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDR 86 (355)
Q Consensus 7 ~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 86 (355)
+++++++|++|++++|.++.+| +++.+++|++|++++|.+..+| + +.+++|++|+++++... + + .++.+++
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~-~~l~~L~~L~Ls~N~l~-~--~--~~~~l~~ 107 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--L-SQNTNLTYLACDSNKLT-N--L--DVTPLTK 107 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--C-TTCTTCSEEECCSSCCS-C--C--CCTTCTT
T ss_pred ChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--c-ccCCCCCEEECcCCCCc-e--e--ecCCCCc
Confidence 5566777777777777766666 5677777777777777666665 4 67777777777665431 1 2 2566666
Q ss_pred ccceEEEeccCccccccccccccccccc
Q 036143 87 LDTFVGYFSKLDDFNTYVKSSDGQRSKH 114 (355)
Q Consensus 87 L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 114 (355)
|++|++..+...... ++.++.|+.|.
T Consensus 108 L~~L~L~~N~l~~l~--~~~l~~L~~L~ 133 (457)
T 3bz5_A 108 LTYLNCDTNKLTKLD--VSQNPLLTYLN 133 (457)
T ss_dssp CCEEECCSSCCSCCC--CTTCTTCCEEE
T ss_pred CCEEECCCCcCCeec--CCCCCcCCEEE
Confidence 777766655554432 44555555554
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-19 Score=178.09 Aligned_cols=105 Identities=10% Similarity=0.137 Sum_probs=73.2
Q ss_pred CC-ccc--cccccceecCCCcccc-ccCcccccCcccceecccCcc-cc--cccchhhhcC------CCcceeeecccCC
Q 036143 5 VP-SLA--KLLALQCLDLEYTAIK-EVPEGMEMLENLVHLTIYSKM-LI--KFPAGILPKL------CNLYSLRLNWGSE 71 (355)
Q Consensus 5 lP-~i~--~l~~L~~L~L~~~~~~-~lP~~i~~L~~L~~L~l~~~~-~~--~lP~~i~~~L------~~L~~L~l~~~~~ 71 (355)
+| +++ ++++|++|++++|.+. .+|..++++++|++|++++|. +. .+|.++ +++ ++|++|+++++..
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~-~~L~~~~~l~~L~~L~L~~n~l 317 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDW-QALADAPVGEKIQIIYIGYNNL 317 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHH-HHHHHSGGGGTCCEEECCSSCC
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHH-HhhhccccCCCCCEEECCCCcC
Confidence 77 777 8888888888888654 678888888888888888886 66 377777 666 7788888877654
Q ss_pred ccccchhH--hhcccccccceEEEeccCc-cccccccccccccccc
Q 036143 72 TSRETVQE--AARSSDRLDTFVGYFSKLD-DFNTYVKSSDGQRSKH 114 (355)
Q Consensus 72 ~~~~~~~~--~l~~L~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~ 114 (355)
. .++. .++.+++|++|++..+... .++ .++.++.|+.|.
T Consensus 318 ~---~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~ 359 (636)
T 4eco_A 318 K---TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLN 359 (636)
T ss_dssp S---SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEE
T ss_pred C---ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEE
Confidence 2 3443 5777777777777666655 333 555555555554
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.5e-19 Score=178.62 Aligned_cols=110 Identities=15% Similarity=0.221 Sum_probs=91.3
Q ss_pred CC-ccccccccceecCCCccccc------------------cCcccc--cCcccceecccCcc-cccccchhhhcCCCcc
Q 036143 5 VP-SLAKLLALQCLDLEYTAIKE------------------VPEGME--MLENLVHLTIYSKM-LIKFPAGILPKLCNLY 62 (355)
Q Consensus 5 lP-~i~~l~~L~~L~L~~~~~~~------------------lP~~i~--~L~~L~~L~l~~~~-~~~lP~~i~~~L~~L~ 62 (355)
|| +++++++|++|+|++|.++. +|..++ ++.+|++|++++|. ...+|..+ +++++|+
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l-~~L~~L~ 518 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL-YDLPELQ 518 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGG-GGCSSCC
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHH-hCCCCCC
Confidence 89 99999999999999999987 999988 99999999999995 56788888 9999999
Q ss_pred eeeecccCCccccchhHhhcccc-------cccceEEEeccCccccc--ccccccccccccc
Q 036143 63 SLRLNWGSETSRETVQEAARSSD-------RLDTFVGYFSKLDDFNT--YVKSSDGQRSKHF 115 (355)
Q Consensus 63 ~L~l~~~~~~~~~~~~~~l~~L~-------~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~~ 115 (355)
+|+++++....+..+|..++.++ +|++|++..+....++. .++.++.|+.|..
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~L 580 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDC 580 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEEC
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEEC
Confidence 99999875233313444677776 99999998888876666 6888888887773
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.4e-18 Score=163.75 Aligned_cols=282 Identities=17% Similarity=0.177 Sum_probs=192.1
Q ss_pred CCCCCC-ccccccccceecCCCcccccc-CcccccCcccceecccCcccccc-cchhhhcCCCcceeeecccCCccccch
Q 036143 1 RLERVP-SLAKLLALQCLDLEYTAIKEV-PEGMEMLENLVHLTIYSKMLIKF-PAGILPKLCNLYSLRLNWGSETSRETV 77 (355)
Q Consensus 1 ~l~~lP-~i~~l~~L~~L~L~~~~~~~l-P~~i~~L~~L~~L~l~~~~~~~l-P~~i~~~L~~L~~L~l~~~~~~~~~~~ 77 (355)
+++.+| .+. .++++|++++|.++.+ |..+.++.+|++|++++|.+..+ |..+ +++++|++|+++++.. .....
T Consensus 22 ~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~L~~n~l-~~~~~ 97 (477)
T 2id5_A 22 RFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAF-NNLFNLRTLGLRSNRL-KLIPL 97 (477)
T ss_dssp CCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEECCSSCC-CSCCT
T ss_pred CcCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhh-hCCccCCEEECCCCcC-CccCc
Confidence 367788 664 6899999999999977 56789999999999999999888 4455 9999999999998654 23322
Q ss_pred hHhhcccccccceEEEeccCcccc-ccccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCccCC
Q 036143 78 QEAARSSDRLDTFVGYFSKLDDFN-TYVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICERE 156 (355)
Q Consensus 78 ~~~l~~L~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~~ 156 (355)
. .++.+++|++|++..+...... ..+..+..|+.|.. ....+.+. .+..+.....++.+.+.++.+....
T Consensus 98 ~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l-------~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~ 168 (477)
T 2id5_A 98 G-VFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEV-------GDNDLVYI-SHRAFSGLNSLEQLTLEKCNLTSIP 168 (477)
T ss_dssp T-SSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEE-------CCTTCCEE-CTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred c-cccCCCCCCEEECCCCccccCChhHccccccCCEEEC-------CCCcccee-ChhhccCCCCCCEEECCCCcCcccC
Confidence 3 5789999999999877776553 45777788887772 22222211 1122333456777888888776544
Q ss_pred CccccCchhHHHH-HhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCC
Q 036143 157 GVTIVLPKDVQGL-IMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNR 235 (355)
Q Consensus 157 ~~~~~~~~~L~~L-l~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~ 235 (355)
...+..++.|+.| +.++ .+..+... ....+++|++|+++++..+..+... .....+|+.|+++++.
T Consensus 169 ~~~l~~l~~L~~L~l~~n--~i~~~~~~--------~~~~l~~L~~L~l~~~~~~~~~~~~--~~~~~~L~~L~l~~n~- 235 (477)
T 2id5_A 169 TEALSHLHGLIVLRLRHL--NINAIRDY--------SFKRLYRLKVLEISHWPYLDTMTPN--CLYGLNLTSLSITHCN- 235 (477)
T ss_dssp HHHHTTCTTCCEEEEESC--CCCEECTT--------CSCSCTTCCEEEEECCTTCCEECTT--TTTTCCCSEEEEESSC-
T ss_pred hhHhcccCCCcEEeCCCC--cCcEeChh--------hcccCcccceeeCCCCccccccCcc--cccCccccEEECcCCc-
Confidence 3333445556655 5553 22222221 1146788999999998777665432 2344589999999764
Q ss_pred CceecccCcchhhhhcccccccccCcccceeecccccccceecCCCcee-cCCCceEEEEcCCCCccccc-cCCCCCCCC
Q 036143 236 NEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAVL-ICNSLQEIQITPSCPKLKRL-SLRLPPLDN 313 (355)
Q Consensus 236 l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l-~~~~L~~L~i~~~c~~L~~l-p~~~~~l~~ 313 (355)
+..++. ..+..+++|++|+++++. +..+.. ..+ .+++|++|++. +| ++..+ |..+..+.
T Consensus 236 l~~~~~-------------~~~~~l~~L~~L~Ls~n~-l~~~~~--~~~~~l~~L~~L~L~-~n-~l~~~~~~~~~~l~- 296 (477)
T 2id5_A 236 LTAVPY-------------LAVRHLVYLRFLNLSYNP-ISTIEG--SMLHELLRLQEIQLV-GG-QLAVVEPYAFRGLN- 296 (477)
T ss_dssp CCSCCH-------------HHHTTCTTCCEEECCSSC-CCEECT--TSCTTCTTCCEEECC-SS-CCSEECTTTBTTCT-
T ss_pred ccccCH-------------HHhcCccccCeeECCCCc-CCccCh--hhccccccCCEEECC-CC-ccceECHHHhcCcc-
Confidence 444432 145688999999999885 666654 333 36799999997 66 45554 55665554
Q ss_pred CCCCCCCCeeEEEehhhhhcc
Q 036143 314 GQPSPSPALEVIKIRKELWES 334 (355)
Q Consensus 314 ~~~~~~~~L~~l~~~~~~~~~ 334 (355)
+|+.|++..+....
T Consensus 297 -------~L~~L~L~~N~l~~ 310 (477)
T 2id5_A 297 -------YLRVLNVSGNQLTT 310 (477)
T ss_dssp -------TCCEEECCSSCCSC
T ss_pred -------cCCEEECCCCcCce
Confidence 99999996554433
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.77 E-value=7.7e-19 Score=176.94 Aligned_cols=107 Identities=19% Similarity=0.233 Sum_probs=71.1
Q ss_pred CCccEEeeccCCCccccchHHHHh--hcCCCCeEEEecCCCCceecccCcchhhhhcccccccccCcccceeeccccc--
Q 036143 197 SHLKALWFSYCPNLQKLFSLQLLA--ALQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLP-- 272 (355)
Q Consensus 197 ~~L~~L~l~~~~~l~~~~~~~~l~--~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-- 272 (355)
++|+.|++++| +++.+.. . +. .+++|+.|+++++. +..++. .+..+++|+.|++++++
T Consensus 728 ~~L~~L~Ls~N-~L~~lp~-~-l~~~~l~~L~~L~Ls~N~-L~~lp~--------------~l~~L~~L~~L~Ls~N~~l 789 (876)
T 4ecn_A 728 YLLTTIDLRFN-KLTSLSD-D-FRATTLPYLSNMDVSYNC-FSSFPT--------------QPLNSSQLKAFGIRHQRDA 789 (876)
T ss_dssp GGCCEEECCSS-CCCCCCG-G-GSTTTCTTCCEEECCSSC-CSSCCC--------------GGGGCTTCCEEECCCCBCT
T ss_pred CCccEEECCCC-CCccchH-H-hhhccCCCcCEEEeCCCC-CCccch--------------hhhcCCCCCEEECCCCCCc
Confidence 37888888888 5554332 2 33 78888888888654 333554 66788899999987643
Q ss_pred ----ccceecCCCceecCCCceEEEEcCCCCccccccCCCCCCCCCCCCCCCCeeEEEehhhhhccc
Q 036143 273 ----ELKSVCSDNAVLICNSLQEIQITPSCPKLKRLSLRLPPLDNGQPSPSPALEVIKIRKELWESL 335 (355)
Q Consensus 273 ----~l~~i~~~~~~l~~~~L~~L~i~~~c~~L~~lp~~~~~l~~~~~~~~~~L~~l~~~~~~~~~l 335 (355)
..+.++. ....+++|++|++. +|. ++.+|..+. ++|+.|++..+-+..+
T Consensus 790 s~N~l~~~ip~--~l~~L~~L~~L~Ls-~N~-L~~Ip~~l~----------~~L~~LdLs~N~l~~i 842 (876)
T 4ecn_A 790 EGNRILRQWPT--GITTCPSLIQLQIG-SND-IRKVDEKLT----------PQLYILDIADNPNISI 842 (876)
T ss_dssp TCCBCCCCCCT--TGGGCSSCCEEECC-SSC-CCBCCSCCC----------SSSCEEECCSCTTCEE
T ss_pred ccccccccChH--HHhcCCCCCEEECC-CCC-CCccCHhhc----------CCCCEEECCCCCCCcc
Confidence 2333433 22336789999997 764 488887652 3899999966655444
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.77 E-value=4.8e-18 Score=161.22 Aligned_cols=105 Identities=11% Similarity=0.212 Sum_probs=84.2
Q ss_pred CCCCCccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhh
Q 036143 2 LERVPSLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAA 81 (355)
Q Consensus 2 l~~lP~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l 81 (355)
++.+|.+..+++|++|++++|.++.+|. ++++.+|++|++++|.+..+|. + +++++|++|++++|.. ..++ .+
T Consensus 58 i~~l~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~-~~l~~L~~L~L~~n~l---~~~~-~~ 130 (466)
T 1o6v_A 58 IKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-L-ANLTNLTGLTLFNNQI---TDID-PL 130 (466)
T ss_dssp CCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-G-TTCTTCCEEECCSSCC---CCCG-GG
T ss_pred CccCcchhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-h-cCCCCCCEEECCCCCC---CCCh-HH
Confidence 5667888889999999999999998876 9999999999999999988887 5 9999999999998754 3345 58
Q ss_pred cccccccceEEEeccCccccccccccccccccc
Q 036143 82 RSSDRLDTFVGYFSKLDDFNTYVKSSDGQRSKH 114 (355)
Q Consensus 82 ~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 114 (355)
+.+++|++|++..+...... .++.++.|+.|.
T Consensus 131 ~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~ 162 (466)
T 1o6v_A 131 KNLTNLNRLELSSNTISDIS-ALSGLTSLQQLS 162 (466)
T ss_dssp TTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEE
T ss_pred cCCCCCCEEECCCCccCCCh-hhccCCcccEee
Confidence 88999999999877765543 355555555554
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.3e-19 Score=176.67 Aligned_cols=294 Identities=14% Similarity=0.162 Sum_probs=182.0
Q ss_pred CCCC-ccccccccceecCCCcc-cc--ccCcccccC------cccceecccCcccccccc--hhhhcCCCcceeeecccC
Q 036143 3 ERVP-SLAKLLALQCLDLEYTA-IK--EVPEGMEML------ENLVHLTIYSKMLIKFPA--GILPKLCNLYSLRLNWGS 70 (355)
Q Consensus 3 ~~lP-~i~~l~~L~~L~L~~~~-~~--~lP~~i~~L------~~L~~L~l~~~~~~~lP~--~i~~~L~~L~~L~l~~~~ 70 (355)
..+| +++++++|++|++++|. ++ .+|..++.+ .+|++|++++|.+..+|. .+ +++++|++|+++++.
T Consensus 263 ~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l-~~l~~L~~L~L~~N~ 341 (636)
T 4eco_A 263 TKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSL-QKMKKLGMLECLYNQ 341 (636)
T ss_dssp SSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHH-TTCTTCCEEECCSCC
T ss_pred ccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhh-ccCCCCCEEeCcCCc
Confidence 4688 99999999999999997 87 489999887 999999999999999998 77 999999999999875
Q ss_pred CccccchhHhhcccccccceEEEeccCcccccccccccc-cccccccccc-c------------eeEeecCCCcccc---
Q 036143 71 ETSRETVQEAARSSDRLDTFVGYFSKLDDFNTYVKSSDG-QRSKHFHFQV-S------------TVYNGSAANTRFY--- 133 (355)
Q Consensus 71 ~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~-L~~L~~~~~~-~------------~~~~~~~~~~~~~--- 133 (355)
.. ..++ .++.+++|++|++..+.....+..+..+.. |+.|....+. . .+....++++...
T Consensus 342 l~--g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~ 418 (636)
T 4eco_A 342 LE--GKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVD 418 (636)
T ss_dssp CE--EECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTT
T ss_pred Cc--cchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcc
Confidence 42 1445 788899999999887777666666777777 7777633221 0 1122222222110
Q ss_pred -ceec-------ccCCccEEEEeccCCccCCCccccCchhHHHH-HhhcccccccccccccccccccccccCCCccEEee
Q 036143 134 -SFLR-------TREANKSVCFYGCKICEREGVTIVLPKDVQGL-IMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWF 204 (355)
Q Consensus 134 -~~l~-------~~~~~~~~~L~~l~~~~~~~~~~~~~~~L~~L-l~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l 204 (355)
..+. ....++.+.+.++.+.......+..++.|+.| +.++ .++.++.... .........+++|+.|++
T Consensus 419 p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N--~l~~i~~~~~-~~~~~~~~~l~~L~~L~L 495 (636)
T 4eco_A 419 GKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN--MLTEIPKNSL-KDENENFKNTYLLTSIDL 495 (636)
T ss_dssp TCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSS--CCSBCCSSSS-EETTEECTTGGGCCEEEC
T ss_pred hhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCC--CCCCcCHHHh-ccccccccccCCccEEEC
Confidence 1111 11122333334433332211111122334444 4443 2222221000 000000012238889999
Q ss_pred ccCCCccccchHHHHh--hcCCCCeEEEecCCCCceecccCcchhhhhcccccccccCcccceeeccccc------ccce
Q 036143 205 SYCPNLQKLFSLQLLA--ALQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLP------ELKS 276 (355)
Q Consensus 205 ~~~~~l~~~~~~~~l~--~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~------~l~~ 276 (355)
+++ +++.+.. . +. .+++|+.|+++++... .++. .+..+++|++|++++++ ..+.
T Consensus 496 s~N-~l~~lp~-~-~~~~~l~~L~~L~Ls~N~l~-~ip~--------------~~~~l~~L~~L~Ls~N~~ls~N~l~~~ 557 (636)
T 4eco_A 496 RFN-KLTKLSD-D-FRATTLPYLVGIDLSYNSFS-KFPT--------------QPLNSSTLKGFGIRNQRDAQGNRTLRE 557 (636)
T ss_dssp CSS-CCCBCCG-G-GSTTTCTTCCEEECCSSCCS-SCCC--------------GGGGCSSCCEEECCSCBCTTCCBCCCC
T ss_pred cCC-cCCccCh-h-hhhccCCCcCEEECCCCCCC-CcCh--------------hhhcCCCCCEEECCCCcccccCccccc
Confidence 888 4554332 2 33 7889999999875543 3654 66789999999996533 3344
Q ss_pred ecCCCceecCCCceEEEEcCCCCccccccCCCCCCCCCCCCCCCCeeEEEehhhhhccc
Q 036143 277 VCSDNAVLICNSLQEIQITPSCPKLKRLSLRLPPLDNGQPSPSPALEVIKIRKELWESL 335 (355)
Q Consensus 277 i~~~~~~l~~~~L~~L~i~~~c~~L~~lp~~~~~l~~~~~~~~~~L~~l~~~~~~~~~l 335 (355)
++. ....+++|++|++. +|. ++.+|..+. ++|+.+++..+-+..+
T Consensus 558 ~p~--~l~~l~~L~~L~Ls-~N~-l~~ip~~~~----------~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 558 WPE--GITLCPSLTQLQIG-SND-IRKVNEKIT----------PNISVLDIKDNPNISI 602 (636)
T ss_dssp CCT--TGGGCSSCCEEECC-SSC-CCBCCSCCC----------TTCCEEECCSCTTCEE
T ss_pred ChH--HHhcCCCCCEEECC-CCc-CCccCHhHh----------CcCCEEECcCCCCccc
Confidence 444 23336799999997 664 488887653 3899999976655544
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-18 Score=169.55 Aligned_cols=109 Identities=14% Similarity=0.165 Sum_probs=51.0
Q ss_pred CCCCC-ccccccccceecCCCcccccc-CcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhH
Q 036143 2 LERVP-SLAKLLALQCLDLEYTAIKEV-PEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQE 79 (355)
Q Consensus 2 l~~lP-~i~~l~~L~~L~L~~~~~~~l-P~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~ 79 (355)
++.+| .+.. ++++|++++|.++.+ |..++++++|++|++++|.+..++...|+++++|++|+++++.. ......
T Consensus 24 l~~iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~- 99 (606)
T 3t6q_A 24 LNEIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL-IFMAET- 99 (606)
T ss_dssp CSSCCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC-SEECTT-
T ss_pred cccCcCCCCC--cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcc-cccChh-
Confidence 34455 4432 455555555555544 34455555555555555555444222225555555555555432 111122
Q ss_pred hhcccccccceEEEeccCccc-cccccccccccccc
Q 036143 80 AARSSDRLDTFVGYFSKLDDF-NTYVKSSDGQRSKH 114 (355)
Q Consensus 80 ~l~~L~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~ 114 (355)
.++.+++|++|++..+..... ...++.++.|+.|.
T Consensus 100 ~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ 135 (606)
T 3t6q_A 100 ALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLY 135 (606)
T ss_dssp TTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEE
T ss_pred hhcccccccEeeccccCcccCCcchhccCCcccEEE
Confidence 455555555555544444433 12344444444444
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=4e-18 Score=166.94 Aligned_cols=92 Identities=15% Similarity=0.080 Sum_probs=51.5
Q ss_pred ccccccccceecCCCcccccc-CcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccc
Q 036143 7 SLAKLLALQCLDLEYTAIKEV-PEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSD 85 (355)
Q Consensus 7 ~i~~l~~L~~L~L~~~~~~~l-P~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~ 85 (355)
.++++++|++|++++|.++.+ |..++++.+|++|++++|.+..+|...++++++|++|+++++... ...++..+++++
T Consensus 75 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~lp~~~~~l~ 153 (606)
T 3vq2_A 75 AWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIH-SCKLPAYFSNLT 153 (606)
T ss_dssp TTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCC-CCCCCGGGGTCT
T ss_pred HhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCccc-ceechHhHhhcC
Confidence 455566666666666655544 555566666666666666555555222266666666666654332 112232677777
Q ss_pred cccceEEEeccCcc
Q 036143 86 RLDTFVGYFSKLDD 99 (355)
Q Consensus 86 ~L~~L~l~~~~~~~ 99 (355)
+|++|++..+....
T Consensus 154 ~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 154 NLVHVDLSYNYIQT 167 (606)
T ss_dssp TCCEEECCSSCCCE
T ss_pred CCCEEEccCCccee
Confidence 77777776555443
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.76 E-value=5.6e-18 Score=160.74 Aligned_cols=279 Identities=14% Similarity=0.191 Sum_probs=153.3
Q ss_pred CCCCCccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccc-------
Q 036143 2 LERVPSLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSR------- 74 (355)
Q Consensus 2 l~~lP~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~------- 74 (355)
++.+|.++++++|++|++++|.+..+|. ++++++|++|++++|.+..+|. + +++++|++|+++++.....
T Consensus 80 l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~-~~l~~L~~L~l~~n~l~~~~~~~~l~ 156 (466)
T 1o6v_A 80 LTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP-L-KNLTNLNRLELSSNTISDISALSGLT 156 (466)
T ss_dssp CCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-G-TTCTTCSEEEEEEEEECCCGGGTTCT
T ss_pred cCCchhhhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCChH-H-cCCCCCCEEECCCCccCCChhhccCC
Confidence 4455567778888888888888777765 7888888888888887777765 4 7778888888776543111
Q ss_pred -----------cchhHhhcccccccceEEEeccCcccccccccccccccccccccc----------ceeEeecCCCccc-
Q 036143 75 -----------ETVQEAARSSDRLDTFVGYFSKLDDFNTYVKSSDGQRSKHFHFQV----------STVYNGSAANTRF- 132 (355)
Q Consensus 75 -----------~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~~~~~----------~~~~~~~~~~~~~- 132 (355)
..++ .++.+++|++|++..+..... ..+..++.|+.|....+. ..+....++++..
T Consensus 157 ~L~~L~l~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~ 234 (466)
T 1o6v_A 157 SLQQLSFGNQVTDLK-PLANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLK 234 (466)
T ss_dssp TCSEEEEEESCCCCG-GGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred cccEeecCCcccCch-hhccCCCCCEEECcCCcCCCC-hhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcc
Confidence 1122 366777888888876665543 235566666666522110 0011111111110
Q ss_pred -cceecccCCccEEEEeccCCccCCCccccCchhHHHH-HhhcccccccccccccccccccccccCCCccEEeeccCCCc
Q 036143 133 -YSFLRTREANKSVCFYGCKICEREGVTIVLPKDVQGL-IMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNL 210 (355)
Q Consensus 133 -~~~l~~~~~~~~~~L~~l~~~~~~~~~~~~~~~L~~L-l~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l 210 (355)
...+.....++.+.+.++.+.+... +..++.|+.| +.++ .++.++. ...+++|+.|+++++ ++
T Consensus 235 ~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n--~l~~~~~----------~~~l~~L~~L~L~~n-~l 299 (466)
T 1o6v_A 235 DIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGAN--QISNISP----------LAGLTALTNLELNEN-QL 299 (466)
T ss_dssp CCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSS--CCCCCGG----------GTTCTTCSEEECCSS-CC
T ss_pred cchhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCC--ccCcccc----------ccCCCccCeEEcCCC-cc
Confidence 0111112223333333333332211 1223333333 3332 1111111 135667777777776 44
Q ss_pred cccchHHHHhhcCCCCeEEEecCCCCceecccCcchhhhhcccccccccCcccceeecccccccceecCCCceecCCCce
Q 036143 211 QKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAVLICNSLQ 290 (355)
Q Consensus 211 ~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~~~L~ 290 (355)
+.+.+ +..+++|+.|++++|. +..+. .+..+++|++|++.++. +..+. ....+++|+
T Consensus 300 ~~~~~---~~~l~~L~~L~L~~n~-l~~~~---------------~~~~l~~L~~L~l~~n~-l~~~~---~l~~l~~L~ 356 (466)
T 1o6v_A 300 EDISP---ISNLKNLTYLTLYFNN-ISDIS---------------PVSSLTKLQRLFFYNNK-VSDVS---SLANLTNIN 356 (466)
T ss_dssp SCCGG---GGGCTTCSEEECCSSC-CSCCG---------------GGGGCTTCCEEECCSSC-CCCCG---GGTTCTTCC
T ss_pred cCchh---hcCCCCCCEEECcCCc-CCCch---------------hhccCccCCEeECCCCc-cCCch---hhccCCCCC
Confidence 44333 4567777777777654 32322 34577888888888773 44442 122356888
Q ss_pred EEEEcCCCCccccccCCCCCCCCCCCCCCCCeeEEEehhhhhcc
Q 036143 291 EIQITPSCPKLKRLSLRLPPLDNGQPSPSPALEVIKIRKELWES 334 (355)
Q Consensus 291 ~L~i~~~c~~L~~lp~~~~~l~~~~~~~~~~L~~l~~~~~~~~~ 334 (355)
.|++. +|.--...| +..++ +|+.+++..+.|..
T Consensus 357 ~L~l~-~n~l~~~~~--~~~l~--------~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 357 WLSAG-HNQISDLTP--LANLT--------RITQLGLNDQAWTN 389 (466)
T ss_dssp EEECC-SSCCCBCGG--GTTCT--------TCCEEECCCEEEEC
T ss_pred EEeCC-CCccCccch--hhcCC--------CCCEEeccCCcccC
Confidence 88887 765433333 44443 88888886555544
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=4e-18 Score=161.03 Aligned_cols=266 Identities=18% Similarity=0.174 Sum_probs=152.7
Q ss_pred ccccccccceecCCCcccc-cc-CcccccCcccceecccCcccccc-cchhhhcCCCcceeeecccCCccccchh-Hhhc
Q 036143 7 SLAKLLALQCLDLEYTAIK-EV-PEGMEMLENLVHLTIYSKMLIKF-PAGILPKLCNLYSLRLNWGSETSRETVQ-EAAR 82 (355)
Q Consensus 7 ~i~~l~~L~~L~L~~~~~~-~l-P~~i~~L~~L~~L~l~~~~~~~l-P~~i~~~L~~L~~L~l~~~~~~~~~~~~-~~l~ 82 (355)
.++++++|++|++++|.+. .+ |..++.+++|++|++++|.+..+ |..+ +++++|++|++++|... +..+. ..++
T Consensus 49 ~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~-~~~~~~~~~~ 126 (455)
T 3v47_A 49 SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAF-NGLANLEVLTLTQCNLD-GAVLSGNFFK 126 (455)
T ss_dssp TTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTT-TTCTTCCEEECTTSCCB-THHHHSSTTT
T ss_pred HhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhc-cCcccCCEEeCCCCCCC-ccccCccccc
Confidence 6778888888888888665 55 45578888888888888877766 4445 88888888888876442 21122 1277
Q ss_pred ccccccceEEEeccCcccc-cc-cccccccccccccccc-----------------------------------------
Q 036143 83 SSDRLDTFVGYFSKLDDFN-TY-VKSSDGQRSKHFHFQV----------------------------------------- 119 (355)
Q Consensus 83 ~L~~L~~L~l~~~~~~~~~-~~-~~~l~~L~~L~~~~~~----------------------------------------- 119 (355)
.+++|++|++..+...... .. ++.++.|+.|....+-
T Consensus 127 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~ 206 (455)
T 3v47_A 127 PLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCG 206 (455)
T ss_dssp TCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHC
T ss_pred CcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccc
Confidence 8888888888777665543 22 5666666666533221
Q ss_pred -----ceeEeecCCCccccc----eecc---------------------------------------cCCccEEEEeccC
Q 036143 120 -----STVYNGSAANTRFYS----FLRT---------------------------------------REANKSVCFYGCK 151 (355)
Q Consensus 120 -----~~~~~~~~~~~~~~~----~l~~---------------------------------------~~~~~~~~L~~l~ 151 (355)
..+....++++.... .+.. ...++.+.+.++.
T Consensus 207 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 286 (455)
T 3v47_A 207 NPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK 286 (455)
T ss_dssp CTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSC
T ss_pred cccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcc
Confidence 011111111111000 0000 0011112222222
Q ss_pred CccCCCccccCchhHHHH-HhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEE
Q 036143 152 ICEREGVTIVLPKDVQGL-IMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVV 230 (355)
Q Consensus 152 ~~~~~~~~~~~~~~L~~L-l~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l 230 (355)
+.+..+..+..+++|+.| +.++ .++.+.. .....+++|++|+++++ +++...+.. +..+++|+.|++
T Consensus 287 l~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~--------~~~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~L 354 (455)
T 3v47_A 287 IFALLKSVFSHFTDLEQLTLAQN--EINKIDD--------NAFWGLTHLLKLNLSQN-FLGSIDSRM-FENLDKLEVLDL 354 (455)
T ss_dssp CCEECTTTTTTCTTCCEEECTTS--CCCEECT--------TTTTTCTTCCEEECCSS-CCCEECGGG-GTTCTTCCEEEC
T ss_pred ccccchhhcccCCCCCEEECCCC--cccccCh--------hHhcCcccCCEEECCCC-ccCCcChhH-hcCcccCCEEEC
Confidence 211111111222333333 3332 1111110 01246789999999999 566654433 678999999999
Q ss_pred ecCCCCcee-cccCcchhhhhcccccccccCcccceeecccccccceecCCCcee-cCCCceEEEEcCCCCcccccc
Q 036143 231 QSCNRNEEI-VEVNDEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAVL-ICNSLQEIQITPSCPKLKRLS 305 (355)
Q Consensus 231 ~~~~~l~~i-~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l-~~~~L~~L~i~~~c~~L~~lp 305 (355)
+++.. ..+ +. .+..+++|++|+++++ .++.++. ..+ .+++|++|++. +++--...|
T Consensus 355 s~N~l-~~~~~~--------------~~~~l~~L~~L~L~~N-~l~~~~~--~~~~~l~~L~~L~l~-~N~l~~~~~ 412 (455)
T 3v47_A 355 SYNHI-RALGDQ--------------SFLGLPNLKELALDTN-QLKSVPD--GIFDRLTSLQKIWLH-TNPWDCSCP 412 (455)
T ss_dssp CSSCC-CEECTT--------------TTTTCTTCCEEECCSS-CCSCCCT--TTTTTCTTCCEEECC-SSCBCCCTT
T ss_pred CCCcc-cccChh--------------hccccccccEEECCCC-ccccCCH--hHhccCCcccEEEcc-CCCcccCCC
Confidence 98754 444 33 6778999999999997 4666655 332 36799999997 654433333
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.6e-18 Score=174.38 Aligned_cols=107 Identities=15% Similarity=0.072 Sum_probs=62.4
Q ss_pred ccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCceecccCcchhhhhcccccccccCcccceeecccccc
Q 036143 194 AKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPE 273 (355)
Q Consensus 194 ~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 273 (355)
+.+++|++|+++++. +....+.. +..+++|+.|+++++.....++. .+..+++|++|++.++..
T Consensus 439 ~~l~~L~~L~L~~n~-l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~--------------~l~~l~~L~~L~L~~N~l 502 (768)
T 3rgz_A 439 GSLSKLRDLKLWLNM-LEGEIPQE-LMYVKTLETLILDFNDLTGEIPS--------------GLSNCTNLNWISLSNNRL 502 (768)
T ss_dssp GGCTTCCEEECCSSC-CCSCCCGG-GGGCTTCCEEECCSSCCCSCCCG--------------GGGGCTTCCEEECCSSCC
T ss_pred hcCCCCCEEECCCCc-ccCcCCHH-HcCCCCceEEEecCCcccCcCCH--------------HHhcCCCCCEEEccCCcc
Confidence 345666677776663 33222222 45666677777766554444443 556677777777777654
Q ss_pred cceecCCCceecCCCceEEEEcCCCCccccccCCCCCCCCCCCCCCCCeeEEEe
Q 036143 274 LKSVCSDNAVLICNSLQEIQITPSCPKLKRLSLRLPPLDNGQPSPSPALEVIKI 327 (355)
Q Consensus 274 l~~i~~~~~~l~~~~L~~L~i~~~c~~L~~lp~~~~~l~~~~~~~~~~L~~l~~ 327 (355)
.+.++. ....+++|++|++. +|.-...+|..+..++ +|+.+++
T Consensus 503 ~~~~p~--~~~~l~~L~~L~L~-~N~l~~~~p~~l~~l~--------~L~~L~L 545 (768)
T 3rgz_A 503 TGEIPK--WIGRLENLAILKLS-NNSFSGNIPAELGDCR--------SLIWLDL 545 (768)
T ss_dssp CSCCCG--GGGGCTTCCEEECC-SSCCEEECCGGGGGCT--------TCCEEEC
T ss_pred CCcCCh--HHhcCCCCCEEECC-CCcccCcCCHHHcCCC--------CCCEEEC
Confidence 434444 22234577777776 6655556676665554 6777766
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.4e-18 Score=172.94 Aligned_cols=90 Identities=21% Similarity=0.291 Sum_probs=45.4
Q ss_pred CCC-c-cccccccceecCCCcccc-ccCcccccCc-ccceecccCcccc-cccchhhhc--CCCcceeeecccCCccccc
Q 036143 4 RVP-S-LAKLLALQCLDLEYTAIK-EVPEGMEMLE-NLVHLTIYSKMLI-KFPAGILPK--LCNLYSLRLNWGSETSRET 76 (355)
Q Consensus 4 ~lP-~-i~~l~~L~~L~L~~~~~~-~lP~~i~~L~-~L~~L~l~~~~~~-~lP~~i~~~--L~~L~~L~l~~~~~~~~~~ 76 (355)
.+| . ++++++|++|++++|.+. .+|..++++. +|++|++++|.+. .+|..+ .. +++|++|++++|.. .+..
T Consensus 333 ~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~-~~~~~~~L~~L~L~~n~l-~~~~ 410 (768)
T 3rgz_A 333 ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL-CQNPKNTLQELYLQNNGF-TGKI 410 (768)
T ss_dssp ECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTT-TCSTTCCCCEEECCSSEE-EEEC
T ss_pred cCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhh-hhcccCCccEEECCCCcc-cccc
Confidence 355 3 666666666666666665 5666666555 5666666655443 233333 33 44455555544322 1112
Q ss_pred hhHhhcccccccceEEEecc
Q 036143 77 VQEAARSSDRLDTFVGYFSK 96 (355)
Q Consensus 77 ~~~~l~~L~~L~~L~l~~~~ 96 (355)
+. .++.+++|++|++..+.
T Consensus 411 p~-~l~~l~~L~~L~Ls~N~ 429 (768)
T 3rgz_A 411 PP-TLSNCSELVSLHLSFNY 429 (768)
T ss_dssp CG-GGGGCTTCCEEECCSSE
T ss_pred CH-HHhcCCCCCEEECcCCc
Confidence 22 44445555555544443
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-18 Score=157.02 Aligned_cols=92 Identities=12% Similarity=-0.029 Sum_probs=62.9
Q ss_pred ccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCceecccCcchhhhhcccccccccCcccceeecccccc
Q 036143 194 AKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPE 273 (355)
Q Consensus 194 ~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 273 (355)
..+++|+.|+++++. ++...+. +..+++|++|+++++.....++. .+..+++|++|+++++.-
T Consensus 218 ~~l~~L~~L~L~~N~-l~~~~~~--~~~l~~L~~L~Ls~N~l~~~~p~--------------~l~~l~~L~~L~Ls~N~l 280 (313)
T 1ogq_A 218 GSDKNTQKIHLAKNS-LAFDLGK--VGLSKNLNGLDLRNNRIYGTLPQ--------------GLTQLKFLHSLNVSFNNL 280 (313)
T ss_dssp CTTSCCSEEECCSSE-ECCBGGG--CCCCTTCCEEECCSSCCEECCCG--------------GGGGCTTCCEEECCSSEE
T ss_pred hcCCCCCEEECCCCc-eeeecCc--ccccCCCCEEECcCCcccCcCCh--------------HHhcCcCCCEEECcCCcc
Confidence 467788888888883 4432222 46678888888887665445554 667888888888888865
Q ss_pred cceecCCCceecCCCceEEEEcCCCCccccccC
Q 036143 274 LKSVCSDNAVLICNSLQEIQITPSCPKLKRLSL 306 (355)
Q Consensus 274 l~~i~~~~~~l~~~~L~~L~i~~~c~~L~~lp~ 306 (355)
-+.++.. ..+++|+.+++. +++.+-..|.
T Consensus 281 ~~~ip~~---~~l~~L~~l~l~-~N~~lc~~p~ 309 (313)
T 1ogq_A 281 CGEIPQG---GNLQRFDVSAYA-NNKCLCGSPL 309 (313)
T ss_dssp EEECCCS---TTGGGSCGGGTC-SSSEEESTTS
T ss_pred cccCCCC---ccccccChHHhc-CCCCccCCCC
Confidence 5566652 335578888887 7776766553
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.4e-18 Score=160.80 Aligned_cols=101 Identities=17% Similarity=0.128 Sum_probs=83.7
Q ss_pred CCCCCccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhh
Q 036143 2 LERVPSLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAA 81 (355)
Q Consensus 2 l~~lP~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l 81 (355)
++.+|.++.+++|++|++++|.++.+| ++.+++|++|++++|.+..+| + +++++|++|+++++... .+ .+
T Consensus 54 l~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~-~~l~~L~~L~L~~N~l~---~l--~~ 123 (457)
T 3bz5_A 54 ITDMTGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--V-TPLTKLTYLNCDTNKLT---KL--DV 123 (457)
T ss_dssp CCCCTTGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--C-TTCTTCCEEECCSSCCS---CC--CC
T ss_pred cccChhhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--c-CCCCcCCEEECCCCcCC---ee--cC
Confidence 567788999999999999999999886 899999999999999999886 5 99999999999987542 23 38
Q ss_pred cccccccceEEEeccCccccccccccccccccc
Q 036143 82 RSSDRLDTFVGYFSKLDDFNTYVKSSDGQRSKH 114 (355)
Q Consensus 82 ~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 114 (355)
+.+++|++|++..+..... .++.++.|+.|.
T Consensus 124 ~~l~~L~~L~l~~N~l~~l--~l~~l~~L~~L~ 154 (457)
T 3bz5_A 124 SQNPLLTYLNCARNTLTEI--DVSHNTQLTELD 154 (457)
T ss_dssp TTCTTCCEEECTTSCCSCC--CCTTCTTCCEEE
T ss_pred CCCCcCCEEECCCCcccee--ccccCCcCCEEE
Confidence 8899999999987776654 366666676666
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-17 Score=160.52 Aligned_cols=107 Identities=16% Similarity=0.094 Sum_probs=88.4
Q ss_pred CCCCCC-ccccccccceecCCCccccccC-cccccCcccceecccCccccccc-chhhhcCCCcceeeecccCCccccch
Q 036143 1 RLERVP-SLAKLLALQCLDLEYTAIKEVP-EGMEMLENLVHLTIYSKMLIKFP-AGILPKLCNLYSLRLNWGSETSRETV 77 (355)
Q Consensus 1 ~l~~lP-~i~~l~~L~~L~L~~~~~~~lP-~~i~~L~~L~~L~l~~~~~~~lP-~~i~~~L~~L~~L~l~~~~~~~~~~~ 77 (355)
+|+.+| .+. ++|++|++++|.++.+| ..++++.+|++|++++|.+..++ ..+ +++++|++|+++++.. ..+
T Consensus 11 ~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l---~~l 84 (520)
T 2z7x_B 11 GLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVF-KFNQELEYLDLSHNKL---VKI 84 (520)
T ss_dssp CCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGG-TTCTTCCEEECCSSCC---CEE
T ss_pred Cccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHh-hcccCCCEEecCCCce---eec
Confidence 467899 676 89999999999999876 57899999999999999999884 455 9999999999999755 245
Q ss_pred hHhhcccccccceEEEeccCcc--cccccccccccccccc
Q 036143 78 QEAARSSDRLDTFVGYFSKLDD--FNTYVKSSDGQRSKHF 115 (355)
Q Consensus 78 ~~~l~~L~~L~~L~l~~~~~~~--~~~~~~~l~~L~~L~~ 115 (355)
+ .. .+++|++|+++.+.... .+..++.++.|+.|..
T Consensus 85 p-~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L 122 (520)
T 2z7x_B 85 S-CH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGL 122 (520)
T ss_dssp E-CC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEE
T ss_pred C-cc-ccCCccEEeccCCccccccchhhhccCCcceEEEe
Confidence 5 33 89999999999888765 3366788888887764
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=7.5e-18 Score=162.98 Aligned_cols=107 Identities=16% Similarity=0.109 Sum_probs=71.3
Q ss_pred ccccccccceecCCCccccccC-cccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccc
Q 036143 7 SLAKLLALQCLDLEYTAIKEVP-EGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSD 85 (355)
Q Consensus 7 ~i~~l~~L~~L~L~~~~~~~lP-~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~ 85 (355)
+++++++|++|++++|.++.+| ..++.+.+|++|++++|.+..+|...++++++|++|+++++........+ .++.++
T Consensus 45 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~ 123 (549)
T 2z81_A 45 DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS-LFPNLT 123 (549)
T ss_dssp TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSC-SCTTCT
T ss_pred hhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhh-hhhccC
Confidence 6788888888888888887664 56788888888888888888877764488888888888876432211122 566777
Q ss_pred cccceEEEecc-Ccccc-ccccccccccccc
Q 036143 86 RLDTFVGYFSK-LDDFN-TYVKSSDGQRSKH 114 (355)
Q Consensus 86 ~L~~L~l~~~~-~~~~~-~~~~~l~~L~~L~ 114 (355)
+|++|++..+. ....+ ..++.++.|+.|.
T Consensus 124 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~ 154 (549)
T 2z81_A 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELE 154 (549)
T ss_dssp TCCEEEEEESSSCCEECTTTTTTCCEEEEEE
T ss_pred CccEEECCCCccccccCHhhhhcccccCeee
Confidence 77777776654 22222 2344444444444
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.9e-17 Score=156.38 Aligned_cols=109 Identities=15% Similarity=0.123 Sum_probs=79.5
Q ss_pred CCCCC-ccccccccceecCCCcccccc-CcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhH
Q 036143 2 LERVP-SLAKLLALQCLDLEYTAIKEV-PEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQE 79 (355)
Q Consensus 2 l~~lP-~i~~l~~L~~L~L~~~~~~~l-P~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~ 79 (355)
++.+| .+. .++++|+|++|+++.+ |..++++.+|++|++++|.+..++.+.|+++++|++|+++++.. ......
T Consensus 66 l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~- 141 (452)
T 3zyi_A 66 LSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL-TVIPSG- 141 (452)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-SBCCTT-
T ss_pred cCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC-CccChh-
Confidence 55677 554 6888889988888866 56688888899999988888887755458888899998887643 222222
Q ss_pred hhcccccccceEEEeccCccccc-cccccccccccc
Q 036143 80 AARSSDRLDTFVGYFSKLDDFNT-YVKSSDGQRSKH 114 (355)
Q Consensus 80 ~l~~L~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~ 114 (355)
.++.+++|++|++..+.+..... .+..++.|+.|.
T Consensus 142 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 177 (452)
T 3zyi_A 142 AFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLD 177 (452)
T ss_dssp TSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred hhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEe
Confidence 57788888888888777665543 356666666666
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.2e-17 Score=155.51 Aligned_cols=109 Identities=17% Similarity=0.161 Sum_probs=78.8
Q ss_pred CCCCC-ccccccccceecCCCccccccC-cccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhH
Q 036143 2 LERVP-SLAKLLALQCLDLEYTAIKEVP-EGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQE 79 (355)
Q Consensus 2 l~~lP-~i~~l~~L~~L~L~~~~~~~lP-~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~ 79 (355)
++.+| .+. .++++|+|++|+++.++ ..++++.+|++|++++|.+..++.+.|.++++|++|+++++.. ......
T Consensus 55 l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l-~~~~~~- 130 (440)
T 3zyj_A 55 LREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL-TTIPNG- 130 (440)
T ss_dssp CSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC-SSCCTT-
T ss_pred cCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC-CeeCHh-
Confidence 56677 554 67888888888888664 5678888888888888888887765558888888888887643 222222
Q ss_pred hhcccccccceEEEeccCccccc-cccccccccccc
Q 036143 80 AARSSDRLDTFVGYFSKLDDFNT-YVKSSDGQRSKH 114 (355)
Q Consensus 80 ~l~~L~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~ 114 (355)
.+..+++|++|++..+.+..... .+..++.|+.|.
T Consensus 131 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 166 (440)
T 3zyj_A 131 AFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLD 166 (440)
T ss_dssp TSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred HhhccccCceeeCCCCcccccCHHHhhhCcccCEeC
Confidence 57888888888887777665543 356666666666
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.4e-17 Score=158.99 Aligned_cols=108 Identities=15% Similarity=0.149 Sum_probs=88.7
Q ss_pred CCCCCC-ccccccccceecCCCccccccC-cccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchh
Q 036143 1 RLERVP-SLAKLLALQCLDLEYTAIKEVP-EGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQ 78 (355)
Q Consensus 1 ~l~~lP-~i~~l~~L~~L~L~~~~~~~lP-~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~ 78 (355)
+++.+| .+. .+|++|++++|.++.+| ..++++++|++|++++|.+..++.+.|+++++|++|+++++.. ..++
T Consensus 42 ~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l---~~lp 116 (562)
T 3a79_B 42 NLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL---QNIS 116 (562)
T ss_dssp CCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCC---CEEC
T ss_pred CCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcC---CccC
Confidence 367888 664 89999999999999886 5799999999999999999998555449999999999999765 3455
Q ss_pred HhhcccccccceEEEeccCcccc--cccccccccccccc
Q 036143 79 EAARSSDRLDTFVGYFSKLDDFN--TYVKSSDGQRSKHF 115 (355)
Q Consensus 79 ~~l~~L~~L~~L~l~~~~~~~~~--~~~~~l~~L~~L~~ 115 (355)
.. .+++|++|+++.+...... ..++.++.|+.|..
T Consensus 117 -~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L 153 (562)
T 3a79_B 117 -CC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGL 153 (562)
T ss_dssp -SC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEE
T ss_pred -cc-ccccCCEEECCCCCccccCchHhhcccCcccEEec
Confidence 33 8999999999988877643 56788888887774
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2e-17 Score=162.36 Aligned_cols=106 Identities=16% Similarity=0.162 Sum_probs=50.3
Q ss_pred ccccccccceecCCCccccccCc-ccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccc
Q 036143 7 SLAKLLALQCLDLEYTAIKEVPE-GMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSD 85 (355)
Q Consensus 7 ~i~~l~~L~~L~L~~~~~~~lP~-~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~ 85 (355)
+|.++++|++|+|++|.++.+|. .+++|++|++|++++|.++.+|.+.|+++++|++|+++++.. ...... .++.++
T Consensus 71 ~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l-~~l~~~-~~~~L~ 148 (635)
T 4g8a_A 71 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL-ASLENF-PIGHLK 148 (635)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCC-CCSTTC-CCTTCT
T ss_pred HHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcC-CCCChh-hhhcCc
Confidence 45555555555555555555533 245555555555555555555544445555555555555432 111111 345555
Q ss_pred cccceEEEeccCccc--cccccccccccccc
Q 036143 86 RLDTFVGYFSKLDDF--NTYVKSSDGQRSKH 114 (355)
Q Consensus 86 ~L~~L~l~~~~~~~~--~~~~~~l~~L~~L~ 114 (355)
+|++|++..+..... +..++.++.|+.|.
T Consensus 149 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ 179 (635)
T 4g8a_A 149 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 179 (635)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEE
T ss_pred ccCeeccccCccccCCCchhhccchhhhhhc
Confidence 555555554443321 23344444444444
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.6e-17 Score=163.35 Aligned_cols=58 Identities=24% Similarity=0.181 Sum_probs=32.3
Q ss_pred CCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCceecccCcchhhhhcccccccccCcccceeeccc
Q 036143 197 SHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSF 270 (355)
Q Consensus 197 ~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 270 (355)
++|++|+++++ +++...+. .++.+++|+.|+++++......+. .+..+++|++|++.+
T Consensus 248 ~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~--------------~~~~l~~L~~L~L~~ 305 (680)
T 1ziw_A 248 TNLTMLDLSYN-NLNVVGND-SFAWLPQLEYFFLEYNNIQHLFSH--------------SLHGLFNVRYLNLKR 305 (680)
T ss_dssp SCCCEEECTTS-CCCEECTT-TTTTCTTCCEEECCSCCBSEECTT--------------TTTTCTTCCEEECTT
T ss_pred CCCCEEECCCC-CcCccCcc-cccCcccccEeeCCCCccCccChh--------------hhcCCCCccEEeccc
Confidence 34777777777 34443322 256677777777776543322222 445566666666654
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.6e-17 Score=150.59 Aligned_cols=269 Identities=14% Similarity=0.071 Sum_probs=143.9
Q ss_pred cccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccccccceE
Q 036143 12 LALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLDTFV 91 (355)
Q Consensus 12 ~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L~ 91 (355)
.++++++++++.++.+|..+. .+|++|++++|.+..+|...++++++|++|+++++.. ...... .++.+++|++|+
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~-~~~~l~~L~~L~ 108 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI-SKIHEK-AFSPLRKLQKLY 108 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-CEECGG-GSTTCTTCCEEE
T ss_pred ccCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCcc-CccCHh-HhhCcCCCCEEE
Confidence 367888888888888887664 5788888888877777654338888888888887543 223233 677888888888
Q ss_pred EEeccCccccccccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCcc--CCCccccCchhHHHH
Q 036143 92 GYFSKLDDFNTYVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICE--REGVTIVLPKDVQGL 169 (355)
Q Consensus 92 l~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~--~~~~~~~~~~~L~~L 169 (355)
+..+.....+..+. +.|+.|. +....+... ....+.....++.+.+.++.+.. .....+..+ .|+.|
T Consensus 109 L~~n~l~~l~~~~~--~~L~~L~-------l~~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L 177 (332)
T 2ft3_A 109 ISKNHLVEIPPNLP--SSLVELR-------IHDNRIRKV-PKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYL 177 (332)
T ss_dssp CCSSCCCSCCSSCC--TTCCEEE-------CCSSCCCCC-CSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCC
T ss_pred CCCCcCCccCcccc--ccCCEEE-------CCCCccCcc-CHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEE
Confidence 87766655544433 4555555 111122211 11112223445555666655532 111111112 44444
Q ss_pred -HhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCceecccCcchhh
Q 036143 170 -IMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVNDEETQ 248 (355)
Q Consensus 170 -l~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~ 248 (355)
+.++ .++ .++. ..+++|++|+++++ .++...+. .+..+++|+.|+++++. +..+..
T Consensus 178 ~l~~n--~l~---~l~~--------~~~~~L~~L~l~~n-~i~~~~~~-~l~~l~~L~~L~L~~N~-l~~~~~------- 234 (332)
T 2ft3_A 178 RISEA--KLT---GIPK--------DLPETLNELHLDHN-KIQAIELE-DLLRYSKLYRLGLGHNQ-IRMIEN------- 234 (332)
T ss_dssp BCCSS--BCS---SCCS--------SSCSSCSCCBCCSS-CCCCCCTT-SSTTCTTCSCCBCCSSC-CCCCCT-------
T ss_pred ECcCC--CCC---ccCc--------cccCCCCEEECCCC-cCCccCHH-HhcCCCCCCEEECCCCc-CCcCCh-------
Confidence 4443 122 2221 22356777777776 34443322 24566777777777543 333321
Q ss_pred hhcccccccccCcccceeecccccccceecCCCceecCCCceEEEEcCCCCccccccCCC-CCCCCCCCCCCCCeeEEEe
Q 036143 249 KELGISAITITLPRLKKLWLSFLPELKSVCSDNAVLICNSLQEIQITPSCPKLKRLSLRL-PPLDNGQPSPSPALEVIKI 327 (355)
Q Consensus 249 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~~~L~~L~i~~~c~~L~~lp~~~-~~l~~~~~~~~~~L~~l~~ 327 (355)
..+..+++|++|+++++ .+..++. +...+++|++|++. ++ .++.+|... .... .....++|+.+++
T Consensus 235 ------~~~~~l~~L~~L~L~~N-~l~~lp~--~l~~l~~L~~L~l~-~N-~l~~~~~~~~~~~~--~~~~~~~l~~L~l 301 (332)
T 2ft3_A 235 ------GSLSFLPTLRELHLDNN-KLSRVPA--GLPDLKLLQVVYLH-TN-NITKVGVNDFCPVG--FGVKRAYYNGISL 301 (332)
T ss_dssp ------TGGGGCTTCCEEECCSS-CCCBCCT--TGGGCTTCCEEECC-SS-CCCBCCTTSSSCSS--CCSSSCCBSEEEC
T ss_pred ------hHhhCCCCCCEEECCCC-cCeecCh--hhhcCccCCEEECC-CC-CCCccChhHccccc--cccccccccceEe
Confidence 04456677777777766 3555544 33335677777775 43 455554322 1110 0011346667766
Q ss_pred hhhh
Q 036143 328 RKEL 331 (355)
Q Consensus 328 ~~~~ 331 (355)
..+-
T Consensus 302 ~~N~ 305 (332)
T 2ft3_A 302 FNNP 305 (332)
T ss_dssp CSSS
T ss_pred ecCc
Confidence 4443
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.7e-17 Score=161.20 Aligned_cols=68 Identities=21% Similarity=0.284 Sum_probs=53.7
Q ss_pred CCCCC--ccccccccceecCCCccccccCc-ccccCcccceecccCccccc--ccchhhhcCCCcceeeecccC
Q 036143 2 LERVP--SLAKLLALQCLDLEYTAIKEVPE-GMEMLENLVHLTIYSKMLIK--FPAGILPKLCNLYSLRLNWGS 70 (355)
Q Consensus 2 l~~lP--~i~~l~~L~~L~L~~~~~~~lP~-~i~~L~~L~~L~l~~~~~~~--lP~~i~~~L~~L~~L~l~~~~ 70 (355)
++.+| .++.+++|++|++++|.++.+|. .++++.+|++|++++|.+.. +|..+ +++++|++|+++++.
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~-~~l~~L~~L~l~~n~ 160 (570)
T 2z63_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF-SNLTNLEHLDLSSNK 160 (570)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGG-GGCTTCCEEECTTSC
T ss_pred CCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhh-cccCCCCEEeCcCCc
Confidence 34444 67888888888888888887765 57888888888888887775 67777 888888888888764
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=4.5e-17 Score=159.40 Aligned_cols=143 Identities=13% Similarity=0.103 Sum_probs=103.7
Q ss_pred CCCCC-ccccccccceecCCCccccccCc-ccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhH
Q 036143 2 LERVP-SLAKLLALQCLDLEYTAIKEVPE-GMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQE 79 (355)
Q Consensus 2 l~~lP-~i~~l~~L~~L~L~~~~~~~lP~-~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~ 79 (355)
++.+| .+. .++++|++++|.++.+|. .++++++|++|++++|.+..++...|+++++|++|+++++.. ....+.
T Consensus 23 l~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l-~~~~p~- 98 (606)
T 3vq2_A 23 LSKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI-QSFSPG- 98 (606)
T ss_dssp CSSCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC-CCCCTT-
T ss_pred cccCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcc-cccChh-
Confidence 66788 554 789999999998887755 688999999999999988887555448999999999988653 333334
Q ss_pred hhcccccccceEEEeccCcccc-ccccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCccC
Q 036143 80 AARSSDRLDTFVGYFSKLDDFN-TYVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICER 155 (355)
Q Consensus 80 ~l~~L~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~ 155 (355)
.++++++|++|++..+...... ..++.+..|+.|. +....+.+...+..+.....++.+.++++.+.+.
T Consensus 99 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~-------L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 99 SFSGLTSLENLVAVETKLASLESFPIGQLITLKKLN-------VAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp SSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEE-------CCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred hcCCcccCCEEEccCCccccccccccCCCCCCCEEe-------CCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence 7888999999999877776655 4577778888777 3333343333455555566777777777776653
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.6e-18 Score=155.82 Aligned_cols=243 Identities=15% Similarity=0.086 Sum_probs=149.1
Q ss_pred cccceecCCCcccc---ccCcccccCcccceecccC-cccc-cccchhhhcCCCcceeeecccCCccccchhHhhccccc
Q 036143 12 LALQCLDLEYTAIK---EVPEGMEMLENLVHLTIYS-KMLI-KFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDR 86 (355)
Q Consensus 12 ~~L~~L~L~~~~~~---~lP~~i~~L~~L~~L~l~~-~~~~-~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 86 (355)
.++++|++++|.+. .+|..++++++|++|++++ |.+. .+|..+ +++++|++|+++++.. .+..+. .++.+++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l-~~~~p~-~~~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNV-SGAIPD-FLSQIKT 126 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECC-EEECCG-GGGGCTT
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhH-hcCCCCCEEECcCCee-CCcCCH-HHhCCCC
Confidence 56788888888776 5788888888888888885 5555 577777 8888888888887643 223333 6788888
Q ss_pred ccceEEEeccCcc-ccccccccccccccccccccceeEeecCCCccccceecccC-CccEEEEeccCCccCCCccccCch
Q 036143 87 LDTFVGYFSKLDD-FNTYVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTRE-ANKSVCFYGCKICEREGVTIVLPK 164 (355)
Q Consensus 87 L~~L~l~~~~~~~-~~~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~L~~l~~~~~~~~~~~~~~ 164 (355)
|++|++..+.... .+..++.++.|+.|....+ .+.+. .+..+.... .++.+.+.++.+.+.
T Consensus 127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-------~l~~~-~p~~l~~l~~~L~~L~L~~N~l~~~--------- 189 (313)
T 1ogq_A 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGN-------RISGA-IPDSYGSFSKLFTSMTISRNRLTGK--------- 189 (313)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSS-------CCEEE-CCGGGGCCCTTCCEEECCSSEEEEE---------
T ss_pred CCEEeCCCCccCCcCChHHhcCCCCCeEECcCC-------cccCc-CCHHHhhhhhcCcEEECcCCeeecc---------
Confidence 8888887666653 4455666677766662111 11100 111122111 333344433333211
Q ss_pred hHHHHHhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCceecccCc
Q 036143 165 DVQGLIMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVND 244 (355)
Q Consensus 165 ~L~~Ll~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~~~~~ 244 (355)
++... ..++ |++|+++++ .++...+. .+..+++|+.|+++++.....++
T Consensus 190 ---------------~~~~~---------~~l~-L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~---- 238 (313)
T 1ogq_A 190 ---------------IPPTF---------ANLN-LAFVDLSRN-MLEGDASV-LFGSDKNTQKIHLAKNSLAFDLG---- 238 (313)
T ss_dssp ---------------CCGGG---------GGCC-CSEEECCSS-EEEECCGG-GCCTTSCCSEEECCSSEECCBGG----
T ss_pred ---------------CChHH---------hCCc-ccEEECcCC-cccCcCCH-HHhcCCCCCEEECCCCceeeecC----
Confidence 01100 2333 889999888 45443332 26788999999998765433332
Q ss_pred chhhhhcccccccccCcccceeecccccccceecCCCceecCCCceEEEEcCCCCccccccCCCCCCCCCCCCCCCCeeE
Q 036143 245 EETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAVLICNSLQEIQITPSCPKLKRLSLRLPPLDNGQPSPSPALEV 324 (355)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~~~L~~L~i~~~c~~L~~lp~~~~~l~~~~~~~~~~L~~ 324 (355)
.+..+++|++|+++++..-+.++. ....+++|++|++. +|.--..+|.. ..+. +|+.
T Consensus 239 -----------~~~~l~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~Ls-~N~l~~~ip~~-~~l~--------~L~~ 295 (313)
T 1ogq_A 239 -----------KVGLSKNLNGLDLRNNRIYGTLPQ--GLTQLKFLHSLNVS-FNNLCGEIPQG-GNLQ--------RFDV 295 (313)
T ss_dssp -----------GCCCCTTCCEEECCSSCCEECCCG--GGGGCTTCCEEECC-SSEEEEECCCS-TTGG--------GSCG
T ss_pred -----------cccccCCCCEEECcCCcccCcCCh--HHhcCcCCCEEECc-CCcccccCCCC-cccc--------ccCh
Confidence 455788999999998854435544 23346799999998 77555577765 4443 7777
Q ss_pred EEeh
Q 036143 325 IKIR 328 (355)
Q Consensus 325 l~~~ 328 (355)
+++.
T Consensus 296 l~l~ 299 (313)
T 1ogq_A 296 SAYA 299 (313)
T ss_dssp GGTC
T ss_pred HHhc
Confidence 6663
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.4e-17 Score=165.42 Aligned_cols=106 Identities=20% Similarity=0.197 Sum_probs=70.2
Q ss_pred ccccccccceecCCCc-ccccc-CcccccCcccceecccCcccccc-cchhhhcCCCcceeeecccCCccccchh-Hhhc
Q 036143 7 SLAKLLALQCLDLEYT-AIKEV-PEGMEMLENLVHLTIYSKMLIKF-PAGILPKLCNLYSLRLNWGSETSRETVQ-EAAR 82 (355)
Q Consensus 7 ~i~~l~~L~~L~L~~~-~~~~l-P~~i~~L~~L~~L~l~~~~~~~l-P~~i~~~L~~L~~L~l~~~~~~~~~~~~-~~l~ 82 (355)
++.++++|++|++++| .+..+ |..++++.+|++|++++|.+..+ |..+ +++++|++|++++|... +..++ ..++
T Consensus 43 ~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~n~l~-~~~~~~~~~~ 120 (844)
T 3j0a_A 43 SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAF-QGLFHLFELRLYFCGLS-DAVLKDGYFR 120 (844)
T ss_dssp SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSS-CSCSSCCCEECTTCCCS-SCCSTTCCCS
T ss_pred HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHc-cCCcccCEeeCcCCCCC-cccccCcccc
Confidence 6777777777777777 44456 66677777788888877777766 4444 77778888887776432 21122 1377
Q ss_pred ccccccceEEEeccCcccc--ccccccccccccc
Q 036143 83 SSDRLDTFVGYFSKLDDFN--TYVKSSDGQRSKH 114 (355)
Q Consensus 83 ~L~~L~~L~l~~~~~~~~~--~~~~~l~~L~~L~ 114 (355)
.+++|++|+++.+...... ..++.++.|+.|.
T Consensus 121 ~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~ 154 (844)
T 3j0a_A 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSID 154 (844)
T ss_dssp SCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEE
T ss_pred ccCCCCEEECCCCcccccccchhHhhCCCCCEEE
Confidence 7778888887776665432 3466666776666
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2.2e-16 Score=142.90 Aligned_cols=105 Identities=21% Similarity=0.268 Sum_probs=79.4
Q ss_pred CCCCC-ccccccccceecCCCccccccCc-ccccCcccceecccCcccccc-cchhhhcCCCcceeeecccCCccccchh
Q 036143 2 LERVP-SLAKLLALQCLDLEYTAIKEVPE-GMEMLENLVHLTIYSKMLIKF-PAGILPKLCNLYSLRLNWGSETSRETVQ 78 (355)
Q Consensus 2 l~~lP-~i~~l~~L~~L~L~~~~~~~lP~-~i~~L~~L~~L~l~~~~~~~l-P~~i~~~L~~L~~L~l~~~~~~~~~~~~ 78 (355)
++.+| .+. .+|++|++++|.++.+|. .++++++|++|++++|.+..+ |..+ +++++|++|+++++... .++
T Consensus 43 l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~---~l~ 116 (330)
T 1xku_A 43 LEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF-APLVKLERLYLSKNQLK---ELP 116 (330)
T ss_dssp CCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTT-TTCTTCCEEECCSSCCS---BCC
T ss_pred ccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHh-cCCCCCCEEECCCCcCC---ccC
Confidence 56677 554 689999999999988865 689999999999999988887 5566 99999999999886542 233
Q ss_pred HhhcccccccceEEEeccCccccc-cccccccccccc
Q 036143 79 EAARSSDRLDTFVGYFSKLDDFNT-YVKSSDGQRSKH 114 (355)
Q Consensus 79 ~~l~~L~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~ 114 (355)
..+. ++|++|++..+....... .+..++.|+.|.
T Consensus 117 ~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 151 (330)
T 1xku_A 117 EKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVE 151 (330)
T ss_dssp SSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEE
T ss_pred hhhc--ccccEEECCCCcccccCHhHhcCCccccEEE
Confidence 2333 789999988777666543 366777777776
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.71 E-value=7e-17 Score=146.32 Aligned_cols=271 Identities=13% Similarity=0.114 Sum_probs=178.4
Q ss_pred CCCCC-ccccccccceecCCCcccccc-CcccccCcccceecccCcccccc-cchhhhcCCCcceeeecccCCccccchh
Q 036143 2 LERVP-SLAKLLALQCLDLEYTAIKEV-PEGMEMLENLVHLTIYSKMLIKF-PAGILPKLCNLYSLRLNWGSETSRETVQ 78 (355)
Q Consensus 2 l~~lP-~i~~l~~L~~L~L~~~~~~~l-P~~i~~L~~L~~L~l~~~~~~~l-P~~i~~~L~~L~~L~l~~~~~~~~~~~~ 78 (355)
++.+| .+. .+|++|++++|.++.+ |..++++.+|++|++++|.+..+ |..+ +++++|++|+++++... .++
T Consensus 45 l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~---~l~ 118 (332)
T 2ft3_A 45 LKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAF-SPLRKLQKLYISKNHLV---EIP 118 (332)
T ss_dssp CSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGS-TTCTTCCEEECCSSCCC---SCC
T ss_pred ccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHh-hCcCCCCEEECCCCcCC---ccC
Confidence 56788 663 6999999999999987 45799999999999999999988 4555 99999999999987542 333
Q ss_pred HhhcccccccceEEEeccCccccc-cccccccccccccccccceeEeecCCCcc-ccceecccCCccEEEEeccCCccCC
Q 036143 79 EAARSSDRLDTFVGYFSKLDDFNT-YVKSSDGQRSKHFHFQVSTVYNGSAANTR-FYSFLRTREANKSVCFYGCKICERE 156 (355)
Q Consensus 79 ~~l~~L~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~L~~l~~~~~~ 156 (355)
..+. ++|++|++..+....... .++.++.|+.|... ...+.... .+..+... .++.+.+.++.+....
T Consensus 119 ~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~-------~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~ 188 (332)
T 2ft3_A 119 PNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMG-------GNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIP 188 (332)
T ss_dssp SSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECC-------SCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCC
T ss_pred cccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECC-------CCccccCCCCcccccCC-ccCEEECcCCCCCccC
Confidence 2444 899999998888776654 37778888877722 21221100 11111111 2333444444443321
Q ss_pred CccccCchhHHHH-HhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCC
Q 036143 157 GVTIVLPKDVQGL-IMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNR 235 (355)
Q Consensus 157 ~~~~~~~~~L~~L-l~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~ 235 (355)
...++.|+.| +.++ .++.++.. ....+++|++|+++++ +++.+.+. .+..+++|+.|+++++ .
T Consensus 189 ---~~~~~~L~~L~l~~n--~i~~~~~~--------~l~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~N-~ 252 (332)
T 2ft3_A 189 ---KDLPETLNELHLDHN--KIQAIELE--------DLLRYSKLYRLGLGHN-QIRMIENG-SLSFLPTLRELHLDNN-K 252 (332)
T ss_dssp ---SSSCSSCSCCBCCSS--CCCCCCTT--------SSTTCTTCSCCBCCSS-CCCCCCTT-GGGGCTTCCEEECCSS-C
T ss_pred ---ccccCCCCEEECCCC--cCCccCHH--------HhcCCCCCCEEECCCC-cCCcCChh-HhhCCCCCCEEECCCC-c
Confidence 1233567777 6664 22222210 1146789999999998 56654432 2678999999999976 4
Q ss_pred CceecccCcchhhhhcccccccccCcccceeecccccccceecCCC-ce----ecCCCceEEEEcCCCCcc--ccccCCC
Q 036143 236 NEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDN-AV----LICNSLQEIQITPSCPKL--KRLSLRL 308 (355)
Q Consensus 236 l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~-~~----l~~~~L~~L~i~~~c~~L--~~lp~~~ 308 (355)
+..++. .+..+++|++|+++++ .++.+.... .. ..+++|+.|.+. +++-. ...|..+
T Consensus 253 l~~lp~--------------~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~-~N~~~~~~~~~~~~ 316 (332)
T 2ft3_A 253 LSRVPA--------------GLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLF-NNPVPYWEVQPATF 316 (332)
T ss_dssp CCBCCT--------------TGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECC-SSSSCGGGSCGGGG
T ss_pred CeecCh--------------hhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEee-cCcccccccCcccc
Confidence 556664 6778999999999987 466665421 11 115789999998 87744 2334445
Q ss_pred CCCCCCCCCCCCCeeEEEeh
Q 036143 309 PPLDNGQPSPSPALEVIKIR 328 (355)
Q Consensus 309 ~~l~~~~~~~~~~L~~l~~~ 328 (355)
..++ +|+.+++.
T Consensus 317 ~~l~--------~L~~l~l~ 328 (332)
T 2ft3_A 317 RCVT--------DRLAIQFG 328 (332)
T ss_dssp TTBC--------CSTTEEC-
T ss_pred cccc--------hhhhhhcc
Confidence 5444 77777763
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-16 Score=145.58 Aligned_cols=259 Identities=14% Similarity=0.078 Sum_probs=157.5
Q ss_pred CCCCC-ccccccccceecCCCccccccCc-ccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhH
Q 036143 2 LERVP-SLAKLLALQCLDLEYTAIKEVPE-GMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQE 79 (355)
Q Consensus 2 l~~lP-~i~~l~~L~~L~L~~~~~~~lP~-~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~ 79 (355)
++.+| .+. .+|++|++++|.++.+|. .++++++|++|++++|.+..++.+.++++++|++|+++++.. ......
T Consensus 43 l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~- 118 (353)
T 2z80_A 43 LNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL-SNLSSS- 118 (353)
T ss_dssp CSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-SSCCHH-
T ss_pred ccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC-CcCCHh-
Confidence 56788 554 489999999999988876 688999999999999988888665449999999999988654 222222
Q ss_pred hhcccccccceEEEeccCccccc--cccccccccccccccccceeEeec-CCCccccceecccCCccEEEEeccCCccCC
Q 036143 80 AARSSDRLDTFVGYFSKLDDFNT--YVKSSDGQRSKHFHFQVSTVYNGS-AANTRFYSFLRTREANKSVCFYGCKICERE 156 (355)
Q Consensus 80 ~l~~L~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~L~~l~~~~~~ 156 (355)
.++.+++|++|++..+.....+. .+..++.|+.|. +.... +... .+..+.....++.+.+.++.+.+..
T Consensus 119 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~-------l~~n~~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~ 190 (353)
T 2z80_A 119 WFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILR-------VGNMDTFTKI-QRKDFAGLTFLEELEIDASDLQSYE 190 (353)
T ss_dssp HHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEE-------EEESSSCCEE-CTTTTTTCCEEEEEEEEETTCCEEC
T ss_pred HhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEE-------CCCCcccccc-CHHHccCCCCCCEEECCCCCcCccC
Confidence 48889999999998777666554 466777777776 22221 1110 0111111222333334333332210
Q ss_pred CccccCchhHHHHHhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCC
Q 036143 157 GVTIVLPKDVQGLIMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRN 236 (355)
Q Consensus 157 ~~~~~~~~~L~~Ll~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l 236 (355)
+.. ...+++|++|+++++. ++.+ +......+++|+.|+++++...
T Consensus 191 ------------------------~~~---------l~~l~~L~~L~l~~n~-l~~~-~~~~~~~~~~L~~L~L~~n~l~ 235 (353)
T 2z80_A 191 ------------------------PKS---------LKSIQNVSHLILHMKQ-HILL-LEIFVDVTSSVECLELRDTDLD 235 (353)
T ss_dssp ------------------------TTT---------TTTCSEEEEEEEECSC-STTH-HHHHHHHTTTEEEEEEESCBCT
T ss_pred ------------------------HHH---------HhccccCCeecCCCCc-cccc-hhhhhhhcccccEEECCCCccc
Confidence 000 1356789999999884 5543 3333566899999999876432
Q ss_pred ceecccCcchhhhhcccccccccCcccceeeccccccc----ceecCCCceecCCCceEEEEcCCCCccccccCCC-CCC
Q 036143 237 EEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPEL----KSVCSDNAVLICNSLQEIQITPSCPKLKRLSLRL-PPL 311 (355)
Q Consensus 237 ~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l----~~i~~~~~~l~~~~L~~L~i~~~c~~L~~lp~~~-~~l 311 (355)
.+.... .......+.++.+.+.++.-- ..++. ....+++|++|++. +| +++.+|.++ ..+
T Consensus 236 -~~~~~~----------l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~--~l~~l~~L~~L~Ls-~N-~l~~i~~~~~~~l 300 (353)
T 2z80_A 236 -TFHFSE----------LSTGETNSLIKKFTFRNVKITDESLFQVMK--LLNQISGLLELEFS-RN-QLKSVPDGIFDRL 300 (353)
T ss_dssp -TCCCC----------------CCCCCCEEEEESCBCCHHHHHHHHH--HHHTCTTCCEEECC-SS-CCCCCCTTTTTTC
T ss_pred -cccccc----------cccccccchhhccccccccccCcchhhhHH--HHhcccCCCEEECC-CC-CCCccCHHHHhcC
Confidence 221100 001223455666666655211 11221 11236789999996 55 677888765 555
Q ss_pred CCCCCCCCCCeeEEEehhh
Q 036143 312 DNGQPSPSPALEVIKIRKE 330 (355)
Q Consensus 312 ~~~~~~~~~~L~~l~~~~~ 330 (355)
+ +|+.+++..+
T Consensus 301 ~--------~L~~L~L~~N 311 (353)
T 2z80_A 301 T--------SLQKIWLHTN 311 (353)
T ss_dssp T--------TCCEEECCSS
T ss_pred C--------CCCEEEeeCC
Confidence 4 8888888433
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=7.6e-17 Score=156.53 Aligned_cols=125 Identities=14% Similarity=0.028 Sum_probs=66.5
Q ss_pred ccCCCccEEeeccCCCccccc-hHHHHhhcCCCCeEEEecCCCCceeccc--Ccchhh----hh-----cccccccccCc
Q 036143 194 AKFSHLKALWFSYCPNLQKLF-SLQLLAALQNLEFLVVQSCNRNEEIVEV--NDEETQ----KE-----LGISAITITLP 261 (355)
Q Consensus 194 ~~~~~L~~L~l~~~~~l~~~~-~~~~l~~L~~L~~L~l~~~~~l~~i~~~--~~~~~~----~~-----~~~~~~~~~~~ 261 (355)
..+++|++|+++++ +++... ....+..+++|++|+++++. +..++.. ...... .. ......+..++
T Consensus 344 ~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 421 (570)
T 2z63_A 344 VDLPSLEFLDLSRN-GLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421 (570)
T ss_dssp CBCTTCCEEECCSS-CCBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCT
T ss_pred ccCCCCCEEeCcCC-ccCccccccccccccCccCEEECCCCc-cccccccccccCCCCEEEccCCccccccchhhhhcCC
Confidence 46778888888877 344332 12236678888888887654 2222210 000000 00 00012345666
Q ss_pred ccceeecccccccceecCCCceecCCCceEEEEcCCCCcc-ccccCCCCCCCCCCCCCCCCeeEEEehhhh
Q 036143 262 RLKKLWLSFLPELKSVCSDNAVLICNSLQEIQITPSCPKL-KRLSLRLPPLDNGQPSPSPALEVIKIRKEL 331 (355)
Q Consensus 262 ~L~~L~l~~~~~l~~i~~~~~~l~~~~L~~L~i~~~c~~L-~~lp~~~~~l~~~~~~~~~~L~~l~~~~~~ 331 (355)
+|++|+++++......+. ....+++|++|++. +|.-. ..+|..+..++ +|+.+++..+.
T Consensus 422 ~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~-~n~l~~~~~p~~~~~l~--------~L~~L~l~~n~ 481 (570)
T 2z63_A 422 NLIYLDISHTHTRVAFNG--IFNGLSSLEVLKMA-GNSFQENFLPDIFTELR--------NLTFLDLSQCQ 481 (570)
T ss_dssp TCCEEECTTSCCEECCTT--TTTTCTTCCEEECT-TCEEGGGEECSCCTTCT--------TCCEEECTTSC
T ss_pred CCCEEeCcCCcccccchh--hhhcCCcCcEEECc-CCcCccccchhhhhccc--------CCCEEECCCCc
Confidence 777777776643222222 11225688888887 77544 35776665554 88888885443
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.2e-16 Score=144.63 Aligned_cols=272 Identities=14% Similarity=0.084 Sum_probs=178.1
Q ss_pred ccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccccccce
Q 036143 11 LLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLDTF 90 (355)
Q Consensus 11 l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L 90 (355)
..++++++++++.++.+|..+. .+|++|++++|.+..+|...++++++|++|+++++.. ...... .++.+++|++|
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~-~~~~l~~L~~L 105 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI-SKISPG-AFAPLVKLERL 105 (330)
T ss_dssp EEETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCC-CCBCTT-TTTTCTTCCEE
T ss_pred cCCCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcC-CeeCHH-HhcCCCCCCEE
Confidence 4589999999999999998775 6899999999999999885459999999999998654 333334 89999999999
Q ss_pred EEEeccCccccccccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCcc--CCCccccCchhHHH
Q 036143 91 VGYFSKLDDFNTYVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICE--REGVTIVLPKDVQG 168 (355)
Q Consensus 91 ~l~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~--~~~~~~~~~~~L~~ 168 (355)
++..+.....+..+. +.|+.|. +....+.+. ....+.....++.+.+.++.+.. .....+..++.|+.
T Consensus 106 ~Ls~n~l~~l~~~~~--~~L~~L~-------l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~ 175 (330)
T 1xku_A 106 YLSKNQLKELPEKMP--KTLQELR-------VHENEITKV-RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY 175 (330)
T ss_dssp ECCSSCCSBCCSSCC--TTCCEEE-------CCSSCCCBB-CHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCE
T ss_pred ECCCCcCCccChhhc--ccccEEE-------CCCCccccc-CHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCE
Confidence 998887766554443 4566666 212222211 11123334566677777776643 11122233445555
Q ss_pred H-HhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCceecccCcchh
Q 036143 169 L-IMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVNDEET 247 (355)
Q Consensus 169 L-l~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~~~~~~~~ 247 (355)
| +.++ .++ .++. ..+++|++|+++++ .++...+. .+..+++|+.|+++++. +..+..
T Consensus 176 L~l~~n--~l~---~l~~--------~~~~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~Ls~n~-l~~~~~------ 233 (330)
T 1xku_A 176 IRIADT--NIT---TIPQ--------GLPPSLTELHLDGN-KITKVDAA-SLKGLNNLAKLGLSFNS-ISAVDN------ 233 (330)
T ss_dssp EECCSS--CCC---SCCS--------SCCTTCSEEECTTS-CCCEECTG-GGTTCTTCCEEECCSSC-CCEECT------
T ss_pred EECCCC--ccc---cCCc--------cccccCCEEECCCC-cCCccCHH-HhcCCCCCCEEECCCCc-CceeCh------
Confidence 5 5553 222 2221 33478999999998 46554333 36788999999998765 344432
Q ss_pred hhhcccccccccCcccceeecccccccceecCCCceecCCCceEEEEcCCCCccccccCCC-CCCCCCCCCCCCCeeEEE
Q 036143 248 QKELGISAITITLPRLKKLWLSFLPELKSVCSDNAVLICNSLQEIQITPSCPKLKRLSLRL-PPLDNGQPSPSPALEVIK 326 (355)
Q Consensus 248 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~~~L~~L~i~~~c~~L~~lp~~~-~~l~~~~~~~~~~L~~l~ 326 (355)
..+..+++|++|+++++ .+..++. +...+++|++|++. +| .++.+|... .... .....++++.++
T Consensus 234 -------~~~~~l~~L~~L~L~~N-~l~~lp~--~l~~l~~L~~L~l~-~N-~i~~~~~~~f~~~~--~~~~~~~l~~l~ 299 (330)
T 1xku_A 234 -------GSLANTPHLRELHLNNN-KLVKVPG--GLADHKYIQVVYLH-NN-NISAIGSNDFCPPG--YNTKKASYSGVS 299 (330)
T ss_dssp -------TTGGGSTTCCEEECCSS-CCSSCCT--TTTTCSSCCEEECC-SS-CCCCCCTTSSSCSS--CCTTSCCCSEEE
T ss_pred -------hhccCCCCCCEEECCCC-cCccCCh--hhccCCCcCEEECC-CC-cCCccChhhcCCcc--cccccccccceE
Confidence 15668899999999988 4666655 33346799999996 55 577776432 2110 001245788888
Q ss_pred ehhhhh
Q 036143 327 IRKELW 332 (355)
Q Consensus 327 ~~~~~~ 332 (355)
+..+.+
T Consensus 300 l~~N~~ 305 (330)
T 1xku_A 300 LFSNPV 305 (330)
T ss_dssp CCSSSS
T ss_pred eecCcc
Confidence 854443
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.5e-17 Score=147.41 Aligned_cols=107 Identities=21% Similarity=0.257 Sum_probs=59.0
Q ss_pred cCCCccEEeeccCCCccc-cchHHHHhhcCCCCeEEEecCCCCcee-cccCcchhhhhcccccccccCcccceeeccccc
Q 036143 195 KFSHLKALWFSYCPNLQK-LFSLQLLAALQNLEFLVVQSCNRNEEI-VEVNDEETQKELGISAITITLPRLKKLWLSFLP 272 (355)
Q Consensus 195 ~~~~L~~L~l~~~~~l~~-~~~~~~l~~L~~L~~L~l~~~~~l~~i-~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 272 (355)
.+++|++|+++++. ++. ..+. .+..+++|+.|+++++. +..+ +. .+..+++|++|+++++.
T Consensus 148 ~l~~L~~L~l~~n~-l~~~~~~~-~~~~l~~L~~L~Ls~n~-l~~~~~~--------------~~~~l~~L~~L~L~~N~ 210 (306)
T 2z66_A 148 GLSSLEVLKMAGNS-FQENFLPD-IFTELRNLTFLDLSQCQ-LEQLSPT--------------AFNSLSSLQVLNMSHNN 210 (306)
T ss_dssp TCTTCCEEECTTCE-EGGGEECS-CCTTCTTCCEEECTTSC-CCEECTT--------------TTTTCTTCCEEECTTSC
T ss_pred cCcCCCEEECCCCc-cccccchh-HHhhCcCCCEEECCCCC-cCCcCHH--------------HhcCCCCCCEEECCCCc
Confidence 45677777777763 332 1121 24567777777777654 3333 22 45567777777777763
Q ss_pred ccceecCCCcee-cCCCceEEEEcCCCCccccccCCCCCCCCCCCCCCCCeeEEEehh
Q 036143 273 ELKSVCSDNAVL-ICNSLQEIQITPSCPKLKRLSLRLPPLDNGQPSPSPALEVIKIRK 329 (355)
Q Consensus 273 ~l~~i~~~~~~l-~~~~L~~L~i~~~c~~L~~lp~~~~~l~~~~~~~~~~L~~l~~~~ 329 (355)
+..+.. ..+ .+++|++|++. +|.--...|..+..+ +++|+.+++..
T Consensus 211 -l~~~~~--~~~~~l~~L~~L~L~-~N~l~~~~~~~~~~~-------~~~L~~L~L~~ 257 (306)
T 2z66_A 211 -FFSLDT--FPYKCLNSLQVLDYS-LNHIMTSKKQELQHF-------PSSLAFLNLTQ 257 (306)
T ss_dssp -CSBCCS--GGGTTCTTCCEEECT-TSCCCBCSSSSCCCC-------CTTCCEEECTT
T ss_pred -cCccCh--hhccCcccCCEeECC-CCCCcccCHHHHHhh-------hccCCEEEccC
Confidence 444332 122 25677777776 664333344444332 12677777733
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.8e-16 Score=159.51 Aligned_cols=292 Identities=17% Similarity=0.116 Sum_probs=177.8
Q ss_pred CCCCCCccccccccceecCCCcccccc-CcccccCcccceecccCc-ccccc-cchhhhcCCCcceeeecccCCccccch
Q 036143 1 RLERVPSLAKLLALQCLDLEYTAIKEV-PEGMEMLENLVHLTIYSK-MLIKF-PAGILPKLCNLYSLRLNWGSETSRETV 77 (355)
Q Consensus 1 ~l~~lP~i~~l~~L~~L~L~~~~~~~l-P~~i~~L~~L~~L~l~~~-~~~~l-P~~i~~~L~~L~~L~l~~~~~~~~~~~ 77 (355)
+++.+|. -..+|++|||++|.++.+ |..++++.+|++|++++| .+..+ |..+ +++++|++|+++++.. .....
T Consensus 15 ~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f-~~L~~L~~L~Ls~N~l-~~~~p 90 (844)
T 3j0a_A 15 NLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAF-RNLPNLRILDLGSSKI-YFLHP 90 (844)
T ss_dssp CSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTT-SSCTTCCEEECTTCCC-CEECT
T ss_pred CCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHh-cCCCCCCEEECCCCcC-cccCH
Confidence 3677887 568999999999999866 778999999999999999 56677 4555 9999999999998754 33334
Q ss_pred hHhhcccccccceEEEeccCcc-cccc--ccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCcc
Q 036143 78 QEAARSSDRLDTFVGYFSKLDD-FNTY--VKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICE 154 (355)
Q Consensus 78 ~~~l~~L~~L~~L~l~~~~~~~-~~~~--~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~ 154 (355)
. .++.+++|++|+++.+...+ .+.. ++.++.|+.|. +..+.+.+......+.....++.+.++++.+.+
T Consensus 91 ~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~-------Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 91 D-AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLD-------LSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp T-SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEE-------EESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred h-HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEE-------CCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 4 89999999999998877765 2332 77888888887 444444433323344445667777777776654
Q ss_pred CCCccccCc--hhHHHH-Hhhcccccc------------------------------ccc-ccccc------cc------
Q 036143 155 REGVTIVLP--KDVQGL-IMRDIEDVT------------------------------SLN-DVFSK------EQ------ 188 (355)
Q Consensus 155 ~~~~~~~~~--~~L~~L-l~~~~~~~~------------------------------~l~-~~~~l------~~------ 188 (355)
.....+... ++|+.| +.++ .-.. .++ .+... ..
T Consensus 163 ~~~~~l~~l~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~ 241 (844)
T 3j0a_A 163 VCEHELEPLQGKTLSFFSLAAN-SLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH 241 (844)
T ss_dssp CCSGGGHHHHHCSSCCCEECCS-BSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSS
T ss_pred eCHHHcccccCCccceEECCCC-ccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccc
Confidence 322211111 122222 2221 0000 000 00000 00
Q ss_pred ----------------cccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCceecccCcchhhhhcc
Q 036143 189 ----------------GLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVNDEETQKELG 252 (355)
Q Consensus 189 ----------------~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~ 252 (355)
.....-..++|+.|+++++ .+....+. .+..+++|+.|+++++......+.
T Consensus 242 ~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~L~~n~i~~~~~~----------- 308 (844)
T 3j0a_A 242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHG-FVFSLNSR-VFETLKDLKVLNLAYNKINKIADE----------- 308 (844)
T ss_dssp CCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTC-CCCEECSC-CSSSCCCCCEEEEESCCCCEECTT-----------
T ss_pred cccccccccccCCCChhhhhccccCCccEEECCCC-cccccChh-hhhcCCCCCEEECCCCcCCCCChH-----------
Confidence 0000001256677777766 34443322 256677788888776543322222
Q ss_pred cccccccCcccceeecccccccceecCCCcee-cCCCceEEEEcCCCCccccccC-CCCCCCCCCCCCCCCeeEEEehhh
Q 036143 253 ISAITITLPRLKKLWLSFLPELKSVCSDNAVL-ICNSLQEIQITPSCPKLKRLSL-RLPPLDNGQPSPSPALEVIKIRKE 330 (355)
Q Consensus 253 ~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l-~~~~L~~L~i~~~c~~L~~lp~-~~~~l~~~~~~~~~~L~~l~~~~~ 330 (355)
.+..+++|++|+++++. +..+.. ..+ .+++|++|++. ++ .+..++. .+..+ ++|+.+++..+
T Consensus 309 ---~~~~l~~L~~L~Ls~N~-l~~~~~--~~~~~l~~L~~L~L~-~N-~i~~~~~~~~~~l--------~~L~~L~Ls~N 372 (844)
T 3j0a_A 309 ---AFYGLDNLQVLNLSYNL-LGELYS--SNFYGLPKVAYIDLQ-KN-HIAIIQDQTFKFL--------EKLQTLDLRDN 372 (844)
T ss_dssp ---TTTTCSSCCEEEEESCC-CSCCCS--CSCSSCTTCCEEECC-SC-CCCCCCSSCSCSC--------CCCCEEEEETC
T ss_pred ---HhcCCCCCCEEECCCCC-CCccCH--HHhcCCCCCCEEECC-CC-CCCccChhhhcCC--------CCCCEEECCCC
Confidence 55678888888888774 444433 222 35688888887 65 5666654 34444 38899988665
Q ss_pred hhcc
Q 036143 331 LWES 334 (355)
Q Consensus 331 ~~~~ 334 (355)
....
T Consensus 373 ~l~~ 376 (844)
T 3j0a_A 373 ALTT 376 (844)
T ss_dssp CSCC
T ss_pred CCCc
Confidence 5444
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=7.3e-16 Score=152.87 Aligned_cols=290 Identities=13% Similarity=0.129 Sum_probs=155.5
Q ss_pred CCCCC-ccccccccceecCCCccccccCc-ccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhH
Q 036143 2 LERVP-SLAKLLALQCLDLEYTAIKEVPE-GMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQE 79 (355)
Q Consensus 2 l~~lP-~i~~l~~L~~L~L~~~~~~~lP~-~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~ 79 (355)
++.+| .+. .++++|++++|.++.+|. .++++.+|++|++++|.+..++.+.++++++|++|+++++.. ......
T Consensus 16 L~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~- 91 (680)
T 1ziw_A 16 LTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL-SQLSDK- 91 (680)
T ss_dssp CSSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCC-CCCCTT-
T ss_pred ccccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCcc-CccChh-
Confidence 56677 554 677888888887776655 477778888888887777776554447788888888876543 222222
Q ss_pred hhcccccccceEEEeccCcccc-ccccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCccCCCc
Q 036143 80 AARSSDRLDTFVGYFSKLDDFN-TYVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICEREGV 158 (355)
Q Consensus 80 ~l~~L~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~~~~ 158 (355)
.++.+++|++|++..+...... ..++.++.|+.|.... ..+.+. .+..+.....++.+.+.++.+.+....
T Consensus 92 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~-------n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~ 163 (680)
T 1ziw_A 92 TFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSH-------NGLSST-KLGTQVQLENLQELLLSNNKIQALKSE 163 (680)
T ss_dssp TTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCS-------SCCSCC-CCCSSSCCTTCCEEECCSSCCCCBCHH
T ss_pred hhccCCCCCEEECCCCccCccChhHccccCCCCEEECCC-------Cccccc-CchhhcccccCCEEEccCCcccccCHH
Confidence 4777777888777766665544 3466666666666221 111111 111122233445555555544432211
Q ss_pred ccc--CchhHHHH-Hhhcccccccccc-----cccccc--------------cccccccCCCccEEeeccCCCccccchH
Q 036143 159 TIV--LPKDVQGL-IMRDIEDVTSLND-----VFSKEQ--------------GLVNAAKFSHLKALWFSYCPNLQKLFSL 216 (355)
Q Consensus 159 ~~~--~~~~L~~L-l~~~~~~~~~l~~-----~~~l~~--------------~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 216 (355)
.+. ..++|+.| +.++ .++.+.+ ...+.. ........++|+.|+++++ .++...+.
T Consensus 164 ~~~~~~~~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n-~l~~~~~~ 240 (680)
T 1ziw_A 164 ELDIFANSSLKKLELSSN--QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS-QLSTTSNT 240 (680)
T ss_dssp HHGGGTTCEESEEECTTC--CCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTS-CCCEECTT
T ss_pred HhhccccccccEEECCCC--cccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCC-cccccChh
Confidence 111 12334444 4332 1111111 000000 0000002366778888777 44443332
Q ss_pred HHHhhcC--CCCeEEEecCCCCceecccCcchhhhhcccccccccCcccceeecccccccceecCCCceecCCCceEEEE
Q 036143 217 QLLAALQ--NLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAVLICNSLQEIQI 294 (355)
Q Consensus 217 ~~l~~L~--~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~~~L~~L~i 294 (355)
. +..++ +|+.|+++++.. ..+.. ..+..+++|++|++.++. +..+... ....+++|++|++
T Consensus 241 ~-~~~l~~~~L~~L~Ls~n~l-~~~~~-------------~~~~~l~~L~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~L 303 (680)
T 1ziw_A 241 T-FLGLKWTNLTMLDLSYNNL-NVVGN-------------DSFAWLPQLEYFFLEYNN-IQHLFSH-SLHGLFNVRYLNL 303 (680)
T ss_dssp T-TGGGGGSCCCEEECTTSCC-CEECT-------------TTTTTCTTCCEEECCSCC-BSEECTT-TTTTCTTCCEEEC
T ss_pred H-hhccCcCCCCEEECCCCCc-CccCc-------------ccccCcccccEeeCCCCc-cCccChh-hhcCCCCccEEec
Confidence 2 44443 488888887653 33321 156788899999998874 4444331 1123568999999
Q ss_pred cCCCCccc-----cccC----CCCCCCCCCCCCCCCeeEEEehhhhh
Q 036143 295 TPSCPKLK-----RLSL----RLPPLDNGQPSPSPALEVIKIRKELW 332 (355)
Q Consensus 295 ~~~c~~L~-----~lp~----~~~~l~~~~~~~~~~L~~l~~~~~~~ 332 (355)
. +|..-. .+|. .+.. +++|+.+++..+..
T Consensus 304 ~-~~~~~~~~~~~~lp~i~~~~~~~--------l~~L~~L~l~~n~l 341 (680)
T 1ziw_A 304 K-RSFTKQSISLASLPKIDDFSFQW--------LKCLEHLNMEDNDI 341 (680)
T ss_dssp T-TCBCCC------CCEECTTTTTT--------CTTCCEEECCSCCB
T ss_pred c-chhhhcccccccccccChhhccc--------CCCCCEEECCCCcc
Confidence 7 654222 2332 2333 45999999965443
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.8e-16 Score=151.60 Aligned_cols=95 Identities=24% Similarity=0.239 Sum_probs=64.8
Q ss_pred CCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCceecccCcchhhhhcccccccccCcccceeecccccccc
Q 036143 196 FSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPELK 275 (355)
Q Consensus 196 ~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 275 (355)
+++|+.|+++++ .++.+. ..+++|+.|+++++ .+..++ ..+++|++|+++++ .++
T Consensus 200 ~~~L~~L~L~~N-~l~~l~-----~~~~~L~~L~Ls~N-~L~~lp-----------------~~l~~L~~L~Ls~N-~L~ 254 (622)
T 3g06_A 200 PSELYKLWAYNN-RLTSLP-----ALPSGLKELIVSGN-RLTSLP-----------------VLPSELKELMVSGN-RLT 254 (622)
T ss_dssp CTTCCEEECCSS-CCSSCC-----CCCTTCCEEECCSS-CCSCCC-----------------CCCTTCCEEECCSS-CCS
T ss_pred cchhhEEECcCC-cccccC-----CCCCCCCEEEccCC-ccCcCC-----------------CCCCcCcEEECCCC-CCC
Confidence 466777777776 444432 12467788888764 344443 25688999999887 566
Q ss_pred eecCCCceecCCCceEEEEcCCCCccccccCCCCCCCCCCCCCCCCeeEEEehhh
Q 036143 276 SVCSDNAVLICNSLQEIQITPSCPKLKRLSLRLPPLDNGQPSPSPALEVIKIRKE 330 (355)
Q Consensus 276 ~i~~~~~~l~~~~L~~L~i~~~c~~L~~lp~~~~~l~~~~~~~~~~L~~l~~~~~ 330 (355)
.++. .+++|++|++. +| ++..+|..+..+. +|+.+++..+
T Consensus 255 ~lp~-----~~~~L~~L~Ls-~N-~L~~lp~~l~~l~--------~L~~L~L~~N 294 (622)
T 3g06_A 255 SLPM-----LPSGLLSLSVY-RN-QLTRLPESLIHLS--------SETTVNLEGN 294 (622)
T ss_dssp CCCC-----CCTTCCEEECC-SS-CCCSCCGGGGGSC--------TTCEEECCSC
T ss_pred cCCc-----ccccCcEEeCC-CC-CCCcCCHHHhhcc--------ccCEEEecCC
Confidence 6543 34689999997 65 7778888776655 8999988433
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.66 E-value=4.7e-16 Score=146.86 Aligned_cols=249 Identities=19% Similarity=0.176 Sum_probs=160.7
Q ss_pred Ccccccc-ccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhccc
Q 036143 6 PSLAKLL-ALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSS 84 (355)
Q Consensus 6 P~i~~l~-~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L 84 (355)
|..|.+. ..+.++.++.+++.+|..+. .+|++|++++|.+..++...|+++++|++|+++++.. ...... .+..+
T Consensus 47 p~~C~C~~~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i-~~~~~~-~~~~l 122 (452)
T 3zyi_A 47 PSVCSCSNQFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI-RQIEVG-AFNGL 122 (452)
T ss_dssp CTTSEECSSSCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-CEECTT-TTTTC
T ss_pred CCCCEECCCCcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCcc-CCcChh-hccCc
Confidence 3444443 46788888889999998776 6899999999999988665559999999999998654 333334 78999
Q ss_pred ccccceEEEeccCcccccc-ccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCccCCCccccCc
Q 036143 85 DRLDTFVGYFSKLDDFNTY-VKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICEREGVTIVLP 163 (355)
Q Consensus 85 ~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~~~~~~~~~ 163 (355)
++|++|++..+........ ++.++.|+.|. ++++... .+....+ ..+
T Consensus 123 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~------------L~~N~l~-~~~~~~~-------------------~~l 170 (452)
T 3zyi_A 123 ASLNTLELFDNWLTVIPSGAFEYLSKLRELW------------LRNNPIE-SIPSYAF-------------------NRV 170 (452)
T ss_dssp TTCCEEECCSSCCSBCCTTTSSSCTTCCEEE------------CCSCCCC-EECTTTT-------------------TTC
T ss_pred ccCCEEECCCCcCCccChhhhcccCCCCEEE------------CCCCCcc-eeCHhHH-------------------hcC
Confidence 9999999988877766543 66777777777 2222110 0100001 112
Q ss_pred hhHHHH-HhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCceeccc
Q 036143 164 KDVQGL-IMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVEV 242 (355)
Q Consensus 164 ~~L~~L-l~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~~~ 242 (355)
++|+.| +.++ ..++.++... ...+++|++|+++++ +++.+.. +..+++|+.|+++++......+.
T Consensus 171 ~~L~~L~l~~~-~~l~~i~~~~--------~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~Ls~N~l~~~~~~- 236 (452)
T 3zyi_A 171 PSLMRLDLGEL-KKLEYISEGA--------FEGLFNLKYLNLGMC-NIKDMPN---LTPLVGLEELEMSGNHFPEIRPG- 236 (452)
T ss_dssp TTCCEEECCCC-TTCCEECTTT--------TTTCTTCCEEECTTS-CCSSCCC---CTTCTTCCEEECTTSCCSEECGG-
T ss_pred CcccEEeCCCC-CCccccChhh--------ccCCCCCCEEECCCC-ccccccc---ccccccccEEECcCCcCcccCcc-
Confidence 222222 2222 2222222210 135778888988888 5555432 56788889999887543332232
Q ss_pred CcchhhhhcccccccccCcccceeecccccccceecCCCcee-cCCCceEEEEcCCCCccccccCCC-CCCCCCCCCCCC
Q 036143 243 NDEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAVL-ICNSLQEIQITPSCPKLKRLSLRL-PPLDNGQPSPSP 320 (355)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l-~~~~L~~L~i~~~c~~L~~lp~~~-~~l~~~~~~~~~ 320 (355)
.+..+++|++|++.++. +..+.. ..+ .+++|++|++. ++ ++..+|... ..+.
T Consensus 237 -------------~~~~l~~L~~L~L~~n~-l~~~~~--~~~~~l~~L~~L~L~-~N-~l~~~~~~~~~~l~-------- 290 (452)
T 3zyi_A 237 -------------SFHGLSSLKKLWVMNSQ-VSLIER--NAFDGLASLVELNLA-HN-NLSSLPHDLFTPLR-------- 290 (452)
T ss_dssp -------------GGTTCTTCCEEECTTSC-CCEECT--TTTTTCTTCCEEECC-SS-CCSCCCTTSSTTCT--------
T ss_pred -------------cccCccCCCEEEeCCCc-CceECH--HHhcCCCCCCEEECC-CC-cCCccChHHhcccc--------
Confidence 66788899999998874 555544 222 25789999996 55 677776543 4433
Q ss_pred CeeEEEehhh
Q 036143 321 ALEVIKIRKE 330 (355)
Q Consensus 321 ~L~~l~~~~~ 330 (355)
+|+.+++..+
T Consensus 291 ~L~~L~L~~N 300 (452)
T 3zyi_A 291 YLVELHLHHN 300 (452)
T ss_dssp TCCEEECCSS
T ss_pred CCCEEEccCC
Confidence 8888888443
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.5e-16 Score=142.47 Aligned_cols=234 Identities=19% Similarity=0.183 Sum_probs=150.8
Q ss_pred CCCCC-ccccccccceecCCCccccccCcc-cccCcccceecccCcccccc---cchhhhcCCCcceeeecccCCccccc
Q 036143 2 LERVP-SLAKLLALQCLDLEYTAIKEVPEG-MEMLENLVHLTIYSKMLIKF---PAGILPKLCNLYSLRLNWGSETSRET 76 (355)
Q Consensus 2 l~~lP-~i~~l~~L~~L~L~~~~~~~lP~~-i~~L~~L~~L~l~~~~~~~l---P~~i~~~L~~L~~L~l~~~~~~~~~~ 76 (355)
++.+| .+. .+|++|++++|.++.+|.. ++++++|++|++++|.+..+ |..+ ..+++|++|+++++.. ..
T Consensus 19 l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~~~L~~L~Ls~n~i---~~ 92 (306)
T 2z66_A 19 LTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD-FGTTSLKYLDLSFNGV---IT 92 (306)
T ss_dssp CSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHH-HSCSCCCEEECCSCSE---EE
T ss_pred cccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccc-ccccccCEEECCCCcc---cc
Confidence 67788 553 6899999999999999877 58999999999999988765 5666 8899999999998754 23
Q ss_pred hhHhhcccccccceEEEeccCcccc--ccccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCcc
Q 036143 77 VQEAARSSDRLDTFVGYFSKLDDFN--TYVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICE 154 (355)
Q Consensus 77 ~~~~l~~L~~L~~L~l~~~~~~~~~--~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~ 154 (355)
++..+..+++|++|++..+...... ..+..++.|+.|....+ .+.+. .+..+.....++.+.+.++.+.+
T Consensus 93 l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-------~l~~~-~~~~~~~l~~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 93 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-------HTRVA-FNGIFNGLSSLEVLKMAGNSFQE 164 (306)
T ss_dssp EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTS-------CCEEC-STTTTTTCTTCCEEECTTCEEGG
T ss_pred ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCC-------cCCcc-chhhcccCcCCCEEECCCCcccc
Confidence 3336889999999999877665544 24667777777762211 11100 11112223345555555554332
Q ss_pred CCCccccCchhHHHHHhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCC
Q 036143 155 REGVTIVLPKDVQGLIMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCN 234 (355)
Q Consensus 155 ~~~~~~~~~~~L~~Ll~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~ 234 (355)
. .++... ..+++|++|+++++ +++...+.. +..+++|+.|+++++.
T Consensus 165 ~-----------------------~~~~~~---------~~l~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~L~~N~ 210 (306)
T 2z66_A 165 N-----------------------FLPDIF---------TELRNLTFLDLSQC-QLEQLSPTA-FNSLSSLQVLNMSHNN 210 (306)
T ss_dssp G-----------------------EECSCC---------TTCTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECTTSC
T ss_pred c-----------------------cchhHH---------hhCcCCCEEECCCC-CcCCcCHHH-hcCCCCCCEEECCCCc
Confidence 0 001111 35678888888888 455543322 5678888888888654
Q ss_pred CCceecccCcchhhhhcccccccccCcccceeecccccccceecCCCceecCCCceEEEEcCCCC
Q 036143 235 RNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAVLICNSLQEIQITPSCP 299 (355)
Q Consensus 235 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~~~L~~L~i~~~c~ 299 (355)
+..+.. ..+..+++|++|+++++......+.....++ ++|++|++. +++
T Consensus 211 -l~~~~~-------------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~-~~L~~L~L~-~N~ 259 (306)
T 2z66_A 211 -FFSLDT-------------FPYKCLNSLQVLDYSLNHIMTSKKQELQHFP-SSLAFLNLT-QND 259 (306)
T ss_dssp -CSBCCS-------------GGGTTCTTCCEEECTTSCCCBCSSSSCCCCC-TTCCEEECT-TCC
T ss_pred -cCccCh-------------hhccCcccCCEeECCCCCCcccCHHHHHhhh-ccCCEEEcc-CCC
Confidence 333321 0455778888888888754444444212221 378888886 554
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.6e-15 Score=130.82 Aligned_cols=85 Identities=14% Similarity=0.167 Sum_probs=43.5
Q ss_pred ccceecCCCccccccCc-ccccCcccceecccCcc-cccccchhhhcCCCcceeeecccCCccccchhHhhcccccccce
Q 036143 13 ALQCLDLEYTAIKEVPE-GMEMLENLVHLTIYSKM-LIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLDTF 90 (355)
Q Consensus 13 ~L~~L~L~~~~~~~lP~-~i~~L~~L~~L~l~~~~-~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L 90 (355)
+|++|++++|.++.+|. .++.+++|++|++++|. +..+|...|+++++|++|++++++........ .+..+++|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~-~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD-ALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT-SEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH-HhCCCCCCCEE
Confidence 55556666555555544 35555566666666554 55555533355556666665542222222222 44555555555
Q ss_pred EEEeccCc
Q 036143 91 VGYFSKLD 98 (355)
Q Consensus 91 ~l~~~~~~ 98 (355)
++..+...
T Consensus 111 ~l~~n~l~ 118 (239)
T 2xwt_C 111 GIFNTGLK 118 (239)
T ss_dssp EEEEECCC
T ss_pred eCCCCCCc
Confidence 55544443
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-15 Score=143.82 Aligned_cols=250 Identities=18% Similarity=0.213 Sum_probs=162.0
Q ss_pred Ccccccc-ccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhccc
Q 036143 6 PSLAKLL-ALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSS 84 (355)
Q Consensus 6 P~i~~l~-~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L 84 (355)
|..|.+. ..+.++.++.+++.+|..+. .++++|++++|.+..++...|+++++|++|+++++.. ...... .+..+
T Consensus 36 p~~C~C~~~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i-~~i~~~-~~~~l 111 (440)
T 3zyj_A 36 PSVCSCSNQFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI-RTIEIG-AFNGL 111 (440)
T ss_dssp CSSSEECTTSCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCC-CEECGG-GGTTC
T ss_pred CCCCEeCCCCCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcC-CccChh-hccCC
Confidence 4344444 46788888889999998876 6899999999999998866559999999999998654 333334 78999
Q ss_pred ccccceEEEeccCccccc-cccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCccCCCccccCc
Q 036143 85 DRLDTFVGYFSKLDDFNT-YVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICEREGVTIVLP 163 (355)
Q Consensus 85 ~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~~~~~~~~~ 163 (355)
++|++|++..+....... .+..++.|+.|... .+.+.... ...+.....++.+.+
T Consensus 112 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-------~N~i~~~~-~~~~~~l~~L~~L~l---------------- 167 (440)
T 3zyj_A 112 ANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR-------NNPIESIP-SYAFNRIPSLRRLDL---------------- 167 (440)
T ss_dssp SSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC-------SCCCCEEC-TTTTTTCTTCCEEEC----------------
T ss_pred ccCCEEECCCCcCCeeCHhHhhccccCceeeCC-------CCcccccC-HHHhhhCcccCEeCC----------------
Confidence 999999998887776654 46777777777721 11111100 000111122222222
Q ss_pred hhHHHHHhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCceecccC
Q 036143 164 KDVQGLIMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVN 243 (355)
Q Consensus 164 ~~L~~Ll~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~~~~ 243 (355)
.++ ..+..++.. ....+++|++|+++++ +++.+.. +..+++|+.|+++++ .+..+..
T Consensus 168 -------~~~-~~l~~i~~~--------~~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~Ls~N-~l~~~~~-- 224 (440)
T 3zyj_A 168 -------GEL-KRLSYISEG--------AFEGLSNLRYLNLAMC-NLREIPN---LTPLIKLDELDLSGN-HLSAIRP-- 224 (440)
T ss_dssp -------CCC-TTCCEECTT--------TTTTCSSCCEEECTTS-CCSSCCC---CTTCSSCCEEECTTS-CCCEECT--
T ss_pred -------CCC-CCcceeCcc--------hhhcccccCeecCCCC-cCccccc---cCCCcccCEEECCCC-ccCccCh--
Confidence 222 222222220 0135778888988888 5555432 567888899999876 4444422
Q ss_pred cchhhhhcccccccccCcccceeecccccccceecCCCcee-cCCCceEEEEcCCCCccccccCCC-CCCCCCCCCCCCC
Q 036143 244 DEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAVL-ICNSLQEIQITPSCPKLKRLSLRL-PPLDNGQPSPSPA 321 (355)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l-~~~~L~~L~i~~~c~~L~~lp~~~-~~l~~~~~~~~~~ 321 (355)
..+..+++|++|++.++ .+..+.. ..+ .+++|++|++. ++ ++..+|... ..+. +
T Consensus 225 -----------~~~~~l~~L~~L~L~~n-~l~~~~~--~~~~~l~~L~~L~L~-~N-~l~~~~~~~~~~l~--------~ 280 (440)
T 3zyj_A 225 -----------GSFQGLMHLQKLWMIQS-QIQVIER--NAFDNLQSLVEINLA-HN-NLTLLPHDLFTPLH--------H 280 (440)
T ss_dssp -----------TTTTTCTTCCEEECTTC-CCCEECT--TSSTTCTTCCEEECT-TS-CCCCCCTTTTSSCT--------T
T ss_pred -----------hhhccCccCCEEECCCC-ceeEECh--hhhcCCCCCCEEECC-CC-CCCccChhHhcccc--------C
Confidence 16678889999999887 4566544 333 26789999996 54 677776543 4433 8
Q ss_pred eeEEEehhh
Q 036143 322 LEVIKIRKE 330 (355)
Q Consensus 322 L~~l~~~~~ 330 (355)
|+.+++..+
T Consensus 281 L~~L~L~~N 289 (440)
T 3zyj_A 281 LERIHLHHN 289 (440)
T ss_dssp CCEEECCSS
T ss_pred CCEEEcCCC
Confidence 888888443
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.64 E-value=9.8e-16 Score=144.62 Aligned_cols=80 Identities=14% Similarity=0.119 Sum_probs=60.3
Q ss_pred cccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccccccceE
Q 036143 12 LALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLDTFV 91 (355)
Q Consensus 12 ~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L~ 91 (355)
++|++|++++|.++.+| +++++.+|++|++++|.+..+|..+ .+|++|+++++.. ..++ .++.+++|++|+
T Consensus 131 ~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~----~~L~~L~L~~n~l---~~l~-~~~~l~~L~~L~ 201 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLP----PSLEFIAAGNNQL---EELP-ELQNLPFLTAIY 201 (454)
T ss_dssp TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCCC----TTCCEEECCSSCC---SSCC-CCTTCTTCCEEE
T ss_pred CCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCCc----ccccEEECcCCcC---CcCc-cccCCCCCCEEE
Confidence 57888888888888888 5888888888888888888777644 4788888887644 2345 678888888888
Q ss_pred EEeccCccc
Q 036143 92 GYFSKLDDF 100 (355)
Q Consensus 92 l~~~~~~~~ 100 (355)
+..+.....
T Consensus 202 l~~N~l~~l 210 (454)
T 1jl5_A 202 ADNNSLKKL 210 (454)
T ss_dssp CCSSCCSSC
T ss_pred CCCCcCCcC
Confidence 876665543
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2e-15 Score=133.60 Aligned_cols=110 Identities=21% Similarity=0.176 Sum_probs=72.0
Q ss_pred CCCCC-ccccccccceecCCCccccccC-cccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhH
Q 036143 2 LERVP-SLAKLLALQCLDLEYTAIKEVP-EGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQE 79 (355)
Q Consensus 2 l~~lP-~i~~l~~L~~L~L~~~~~~~lP-~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~ 79 (355)
++.+| .+ ..+|++|++++|.++.+| ..++.+.+|++|++++|.+..++...++++++|++|+++++.........
T Consensus 23 l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~- 99 (285)
T 1ozn_A 23 LQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPA- 99 (285)
T ss_dssp CSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTT-
T ss_pred cccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHH-
Confidence 45566 44 467888888888777765 34777888888888888777763332378888888888776423333333
Q ss_pred hhcccccccceEEEeccCcccc-ccccccccccccc
Q 036143 80 AARSSDRLDTFVGYFSKLDDFN-TYVKSSDGQRSKH 114 (355)
Q Consensus 80 ~l~~L~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~ 114 (355)
.+..+++|++|++..+...... ..++.++.|+.|.
T Consensus 100 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 135 (285)
T 1ozn_A 100 TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY 135 (285)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred HhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEE
Confidence 6777788888887666655443 3345555555555
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.62 E-value=2e-15 Score=135.76 Aligned_cols=104 Identities=20% Similarity=0.124 Sum_probs=53.0
Q ss_pred cCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCceecccCcchhhhhcccccccccCcccceeeccccccc
Q 036143 195 KFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPEL 274 (355)
Q Consensus 195 ~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 274 (355)
.+++|++|+++++ .++...+......+++|++|+++++. +..+. ....+++|++|+++++ .+
T Consensus 142 ~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~---------------~~~~l~~L~~L~Ls~N-~l 203 (317)
T 3o53_A 142 CRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNF-IYDVK---------------GQVVFAKLKTLDLSSN-KL 203 (317)
T ss_dssp GGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSC-CCEEE---------------CCCCCTTCCEEECCSS-CC
T ss_pred ccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCCc-Ccccc---------------cccccccCCEEECCCC-cC
Confidence 3455666666665 34443332222355666666666543 33332 2224566666666665 34
Q ss_pred ceecCCCceecCCCceEEEEcCCCCccccccCCCCCCCCCCCCCCCCeeEEEeh
Q 036143 275 KSVCSDNAVLICNSLQEIQITPSCPKLKRLSLRLPPLDNGQPSPSPALEVIKIR 328 (355)
Q Consensus 275 ~~i~~~~~~l~~~~L~~L~i~~~c~~L~~lp~~~~~l~~~~~~~~~~L~~l~~~ 328 (355)
..++. ....+++|++|++. +| .++.+|..+..+. +|+.+++.
T Consensus 204 ~~l~~--~~~~l~~L~~L~L~-~N-~l~~l~~~~~~l~--------~L~~L~l~ 245 (317)
T 3o53_A 204 AFMGP--EFQSAAGVTWISLR-NN-KLVLIEKALRFSQ--------NLEHFDLR 245 (317)
T ss_dssp CEECG--GGGGGTTCSEEECT-TS-CCCEECTTCCCCT--------TCCEEECT
T ss_pred Ccchh--hhcccCcccEEECc-CC-cccchhhHhhcCC--------CCCEEEcc
Confidence 44443 22234566666664 43 5555665554433 66666663
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=3.5e-15 Score=131.41 Aligned_cols=109 Identities=15% Similarity=0.214 Sum_probs=75.4
Q ss_pred CCCCC-ccccccccceecCCCccccccCc-ccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhH
Q 036143 2 LERVP-SLAKLLALQCLDLEYTAIKEVPE-GMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQE 79 (355)
Q Consensus 2 l~~lP-~i~~l~~L~~L~L~~~~~~~lP~-~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~ 79 (355)
++++| .+. .+|++|++++|.++.+|. .++++.+|++|++++|.+..++.+.++++++|++|+++++.. ......
T Consensus 19 l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~- 94 (276)
T 2z62_A 19 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI-QSLALG- 94 (276)
T ss_dssp CSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC-CEECTT-
T ss_pred ccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc-CccChh-
Confidence 45677 553 578899999988887765 678888999999999888888775448888999999887643 233333
Q ss_pred hhcccccccceEEEeccCccccc-cccccccccccc
Q 036143 80 AARSSDRLDTFVGYFSKLDDFNT-YVKSSDGQRSKH 114 (355)
Q Consensus 80 ~l~~L~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~ 114 (355)
.+..+++|++|++..+....... .++.++.|+.|.
T Consensus 95 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 130 (276)
T 2z62_A 95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130 (276)
T ss_dssp TTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEE
T ss_pred hhcCCccccEEECCCCCccccCchhcccCCCCCEEE
Confidence 67888888888886555444332 233444444333
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.62 E-value=3.6e-15 Score=136.07 Aligned_cols=99 Identities=21% Similarity=0.165 Sum_probs=56.9
Q ss_pred CccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCceecccCcchhhhhcccccccccCcccceeeccccccccee
Q 036143 198 HLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPELKSV 277 (355)
Q Consensus 198 ~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i 277 (355)
.++.|+++++ +++.+... ....++|+.|.+.+++.++.++.. .+..+++|++|+++++ .++.+
T Consensus 155 ~l~~L~L~~N-~i~~i~~~--~f~~~~L~~l~l~~~n~l~~i~~~-------------~f~~l~~L~~LdLs~N-~l~~l 217 (350)
T 4ay9_X 155 ESVILWLNKN-GIQEIHNS--AFNGTQLDELNLSDNNNLEELPND-------------VFHGASGPVILDISRT-RIHSL 217 (350)
T ss_dssp SCEEEECCSS-CCCEECTT--SSTTEEEEEEECTTCTTCCCCCTT-------------TTTTEECCSEEECTTS-CCCCC
T ss_pred hhhhhccccc-cccCCChh--hccccchhHHhhccCCcccCCCHH-------------HhccCcccchhhcCCC-CcCcc
Confidence 4556666665 44443322 123345666666666666666531 3456667777777665 45555
Q ss_pred cCCCceecCCCceEEEEcCCCCccccccCCCCCCCCCCCCCCCCeeEEEe
Q 036143 278 CSDNAVLICNSLQEIQITPSCPKLKRLSLRLPPLDNGQPSPSPALEVIKI 327 (355)
Q Consensus 278 ~~~~~~l~~~~L~~L~i~~~c~~L~~lp~~~~~l~~~~~~~~~~L~~l~~ 327 (355)
+. +. |.+|+.|++. +|..++.+|. +..++ +|+.+++
T Consensus 218 p~--~~--~~~L~~L~~l-~~~~l~~lP~-l~~l~--------~L~~l~l 253 (350)
T 4ay9_X 218 PS--YG--LENLKKLRAR-STYNLKKLPT-LEKLV--------ALMEASL 253 (350)
T ss_dssp CS--SS--CTTCCEEECT-TCTTCCCCCC-TTTCC--------SCCEEEC
T ss_pred Ch--hh--hccchHhhhc-cCCCcCcCCC-chhCc--------ChhhCcC
Confidence 44 33 3467777776 7777777763 44433 6666666
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=2.5e-15 Score=134.67 Aligned_cols=100 Identities=16% Similarity=0.202 Sum_probs=82.3
Q ss_pred ccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhccccc
Q 036143 7 SLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDR 86 (355)
Q Consensus 7 ~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 86 (355)
...++.+|++|++++|.++.+| .+..+.+|++|++++|.+..+|. + +++++|++|+++++.. ..++ .++.+++
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~-~~l~~L~~L~L~~n~l---~~~~-~~~~l~~ 108 (308)
T 1h6u_A 36 TQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-L-KNLTKITELELSGNPL---KNVS-AIAGLQS 108 (308)
T ss_dssp CHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-G-TTCCSCCEEECCSCCC---SCCG-GGTTCTT
T ss_pred cHHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-H-ccCCCCCEEEccCCcC---CCch-hhcCCCC
Confidence 4567899999999999999987 68999999999999999999988 6 9999999999998764 3345 7999999
Q ss_pred ccceEEEeccCccccccccccccccccc
Q 036143 87 LDTFVGYFSKLDDFNTYVKSSDGQRSKH 114 (355)
Q Consensus 87 L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 114 (355)
|++|++..+...... .+..++.|+.|.
T Consensus 109 L~~L~l~~n~l~~~~-~l~~l~~L~~L~ 135 (308)
T 1h6u_A 109 IKTLDLTSTQITDVT-PLAGLSNLQVLY 135 (308)
T ss_dssp CCEEECTTSCCCCCG-GGTTCTTCCEEE
T ss_pred CCEEECCCCCCCCch-hhcCCCCCCEEE
Confidence 999999877766543 355666666655
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=9.9e-16 Score=139.90 Aligned_cols=111 Identities=14% Similarity=0.106 Sum_probs=89.9
Q ss_pred CCCCC--ccccccccceecCCCcccccc-CcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccch-
Q 036143 2 LERVP--SLAKLLALQCLDLEYTAIKEV-PEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETV- 77 (355)
Q Consensus 2 l~~lP--~i~~l~~L~~L~L~~~~~~~l-P~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~- 77 (355)
++.+| .+.++++|++|++++|.++.+ |..++++.+|++|++++|.+..+|.+.++++++|++|+++++... ....
T Consensus 64 i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~ 142 (353)
T 2z80_A 64 ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGET 142 (353)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSS
T ss_pred CcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCch
Confidence 45566 689999999999999999977 556999999999999999999999985599999999999987542 2222
Q ss_pred hHhhcccccccceEEEecc-Ccccc-ccccccccccccc
Q 036143 78 QEAARSSDRLDTFVGYFSK-LDDFN-TYVKSSDGQRSKH 114 (355)
Q Consensus 78 ~~~l~~L~~L~~L~l~~~~-~~~~~-~~~~~l~~L~~L~ 114 (355)
. .++.+++|++|++..+. ..... ..++.++.|+.|.
T Consensus 143 ~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 180 (353)
T 2z80_A 143 S-LFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELE 180 (353)
T ss_dssp C-SCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEE
T ss_pred h-hhccCCCCcEEECCCCccccccCHHHccCCCCCCEEE
Confidence 2 58899999999998874 44443 4577777888777
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.2e-15 Score=134.21 Aligned_cols=253 Identities=13% Similarity=0.070 Sum_probs=156.0
Q ss_pred cccccccceecCCCccccccCcccccCcccceecccCccccc--ccchhhh-------cCCCcceeeecccCCccccchh
Q 036143 8 LAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIK--FPAGILP-------KLCNLYSLRLNWGSETSRETVQ 78 (355)
Q Consensus 8 i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~--lP~~i~~-------~L~~L~~L~l~~~~~~~~~~~~ 78 (355)
++..++|++|++++|.+ .+|..+... |++|++++|.+.. +|..+ . ++++|++|+++++.. .+..+.
T Consensus 39 ~~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~-~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~ 113 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRI-LFGALRVLGISGLQELTLENLEV-TGTAPP 113 (312)
T ss_dssp EEEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHH-HHHHHHHHTTSCCCEEEEEEEBC-BSCCCC
T ss_pred EccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHH-HHHHHHhcCcCCccEEEccCCcc-cchhHH
Confidence 45677788888888887 788777655 8888888887643 56555 4 688888888887654 222223
Q ss_pred Hhh--cccccccceEEEeccCcccccccccc-----ccccccccccccceeEeecCCCccccceecccCCccEEEEeccC
Q 036143 79 EAA--RSSDRLDTFVGYFSKLDDFNTYVKSS-----DGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCK 151 (355)
Q Consensus 79 ~~l--~~L~~L~~L~l~~~~~~~~~~~~~~l-----~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~ 151 (355)
.+ +.+++|++|+++.+.....+..++.+ +.|+.|. +....+.+.. +..+.....++.++++++.
T Consensus 114 -~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~-------L~~N~l~~~~-~~~~~~l~~L~~L~Ls~N~ 184 (312)
T 1wwl_A 114 -PLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLS-------IAQAHSLNFS-CEQVRVFPALSTLDLSDNP 184 (312)
T ss_dssp -CSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEE-------EESCSCCCCC-TTTCCCCSSCCEEECCSCT
T ss_pred -HHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEE-------eeCCCCccch-HHHhccCCCCCEEECCCCC
Confidence 44 78888888888877766554444444 5555555 3333332221 1112222333334443333
Q ss_pred CccCCCccccCchhHHHHHhhcccccccccccccccccccccccCCCccEEeeccCCCccccc--hHHHHhhcCCCCeEE
Q 036143 152 ICEREGVTIVLPKDVQGLIMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLF--SLQLLAALQNLEFLV 229 (355)
Q Consensus 152 ~~~~~~~~~~~~~~L~~Ll~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~l~~L~~L~~L~ 229 (355)
+.+.. ...... ....+++|++|+++++ +++.+. +...+..+++|+.|+
T Consensus 185 l~~~~---------------------~~~~~~--------~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~ 234 (312)
T 1wwl_A 185 ELGER---------------------GLISAL--------CPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLD 234 (312)
T ss_dssp TCHHH---------------------HHHHHS--------CTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEE
T ss_pred cCcch---------------------HHHHHH--------HhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEE
Confidence 21100 000000 0146789999999999 565432 223346789999999
Q ss_pred EecCCCCceecccCcchhhhhcccccccccCcccceeecccccccceecCCCceecCCCceEEEEcCCCCccccccCCCC
Q 036143 230 VQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAVLICNSLQEIQITPSCPKLKRLSLRLP 309 (355)
Q Consensus 230 l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~~~L~~L~i~~~c~~L~~lp~~~~ 309 (355)
++++......+. . ....+++|++|+++++. ++.++. ... ++|++|++. + .+++.+|. +.
T Consensus 235 Ls~N~l~~~~~~-~------------~~~~l~~L~~L~Ls~N~-l~~ip~--~~~--~~L~~L~Ls-~-N~l~~~p~-~~ 293 (312)
T 1wwl_A 235 LSHNSLRDAAGA-P------------SCDWPSQLNSLNLSFTG-LKQVPK--GLP--AKLSVLDLS-Y-NRLDRNPS-PD 293 (312)
T ss_dssp CTTSCCCSSCCC-S------------CCCCCTTCCEEECTTSC-CSSCCS--SCC--SEEEEEECC-S-SCCCSCCC-TT
T ss_pred CCCCcCCcccch-h------------hhhhcCCCCEEECCCCc-cChhhh--hcc--CCceEEECC-C-CCCCCChh-Hh
Confidence 997654332311 0 34467999999999984 666655 222 699999996 5 57888876 55
Q ss_pred CCCCCCCCCCCCeeEEEehhhhhc
Q 036143 310 PLDNGQPSPSPALEVIKIRKELWE 333 (355)
Q Consensus 310 ~l~~~~~~~~~~L~~l~~~~~~~~ 333 (355)
.+. +|+.+++..+.+.
T Consensus 294 ~l~--------~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 294 ELP--------QVGNLSLKGNPFL 309 (312)
T ss_dssp TSC--------EEEEEECTTCTTT
T ss_pred hCC--------CCCEEeccCCCCC
Confidence 444 9999999665543
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.7e-14 Score=126.64 Aligned_cols=98 Identities=15% Similarity=0.139 Sum_probs=53.6
Q ss_pred ccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccccccceEE
Q 036143 13 ALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLDTFVG 92 (355)
Q Consensus 13 ~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L~l 92 (355)
+.+++++++++++.+|..+. .+|++|++++|.+..+|...|+++++|++|+++++.. ...... .+..+++|++|++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~i~~~-~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAG-IFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCC-SCCCTT-TTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCcc-CeeChh-hhcCCCCCCEEEC
Confidence 35666666666666665554 4566666666666666654336666666666665432 111111 3456666666666
Q ss_pred EeccCccccc-cccccccccccc
Q 036143 93 YFSKLDDFNT-YVKSSDGQRSKH 114 (355)
Q Consensus 93 ~~~~~~~~~~-~~~~l~~L~~L~ 114 (355)
..+....... .+..+..|+.|.
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~ 115 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELR 115 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEE
T ss_pred CCCcCCcCCHhHcccccCCCEEE
Confidence 6555544332 234444444444
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.58 E-value=8.1e-15 Score=139.59 Aligned_cols=80 Identities=16% Similarity=0.211 Sum_probs=59.4
Q ss_pred cccceecCCCccccccC-cccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccccccce
Q 036143 12 LALQCLDLEYTAIKEVP-EGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLDTF 90 (355)
Q Consensus 12 ~~L~~L~L~~~~~~~lP-~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L 90 (355)
.+|++|+|++|.+..+| ..++.+++|++|++++|.+...+. + +.+++|++|++++|.. . .+...++|++|
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l-~~l~~L~~L~Ls~N~l---~----~l~~~~~L~~L 104 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-L-ESLSTLRTLDLNNNYV---Q----ELLVGPSIETL 104 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-C-TTCTTCCEEECCSSEE---E----EEEECTTCCEE
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-c-ccCCCCCEEEecCCcC---C----CCCCCCCcCEE
Confidence 38888888888888664 578888888899888888876665 5 8888888888887643 1 23344778888
Q ss_pred EEEeccCccc
Q 036143 91 VGYFSKLDDF 100 (355)
Q Consensus 91 ~l~~~~~~~~ 100 (355)
++..+.+...
T Consensus 105 ~L~~N~l~~~ 114 (487)
T 3oja_A 105 HAANNNISRV 114 (487)
T ss_dssp ECCSSCCCCE
T ss_pred ECcCCcCCCC
Confidence 8876665543
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.7e-14 Score=136.12 Aligned_cols=91 Identities=13% Similarity=0.103 Sum_probs=65.2
Q ss_pred cccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccccccceE
Q 036143 12 LALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLDTFV 91 (355)
Q Consensus 12 ~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L~ 91 (355)
.+|++|++++|.++.+|... .+|++|++++|.+..+| ++ +++++|++|+++++... .++ . ...+|++|+
T Consensus 111 ~~L~~L~l~~n~l~~l~~~~---~~L~~L~L~~n~l~~lp-~~-~~l~~L~~L~l~~N~l~---~lp-~--~~~~L~~L~ 179 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSDLP---PLLEYLGVSNNQLEKLP-EL-QNSSFLKIIDVDNNSLK---KLP-D--LPPSLEFIA 179 (454)
T ss_dssp TTCCEEECCSSCCSCCCSCC---TTCCEEECCSSCCSSCC-CC-TTCTTCCEEECCSSCCS---CCC-C--CCTTCCEEE
T ss_pred CCCcEEECCCCccCcccCCC---CCCCEEECcCCCCCCCc-cc-CCCCCCCEEECCCCcCc---ccC-C--CcccccEEE
Confidence 66777777777776665421 68899999999888888 46 89999999999886542 233 1 135888888
Q ss_pred EEeccCccccccccccccccccc
Q 036143 92 GYFSKLDDFNTYVKSSDGQRSKH 114 (355)
Q Consensus 92 l~~~~~~~~~~~~~~l~~L~~L~ 114 (355)
+..+.....+ .++.++.|+.|.
T Consensus 180 L~~n~l~~l~-~~~~l~~L~~L~ 201 (454)
T 1jl5_A 180 AGNNQLEELP-ELQNLPFLTAIY 201 (454)
T ss_dssp CCSSCCSSCC-CCTTCTTCCEEE
T ss_pred CcCCcCCcCc-cccCCCCCCEEE
Confidence 8877776654 566777777666
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.56 E-value=2.3e-14 Score=127.15 Aligned_cols=102 Identities=13% Similarity=0.152 Sum_probs=81.8
Q ss_pred ccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhccccc
Q 036143 7 SLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDR 86 (355)
Q Consensus 7 ~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 86 (355)
+++++.+++.+++++++++.+|..+. .++++|++++|.+..++...+..+++|++|+++++.. ..++ ..+.+++
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l---~~~~-~~~~l~~ 78 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL---TKLQ-VDGTLPV 78 (290)
T ss_dssp EEECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC---CEEE-CCSCCTT
T ss_pred cccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCcc---Cccc-CCCCCCc
Confidence 67889999999999999999998876 6899999999999988765559999999999998754 3334 4478899
Q ss_pred ccceEEEeccCccccccccccccccccc
Q 036143 87 LDTFVGYFSKLDDFNTYVKSSDGQRSKH 114 (355)
Q Consensus 87 L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 114 (355)
|++|+++.+....++..+..+..|+.|.
T Consensus 79 L~~L~Ls~N~l~~l~~~~~~l~~L~~L~ 106 (290)
T 1p9a_G 79 LGTLDLSHNQLQSLPLLGQTLPALTVLD 106 (290)
T ss_dssp CCEEECCSSCCSSCCCCTTTCTTCCEEE
T ss_pred CCEEECCCCcCCcCchhhccCCCCCEEE
Confidence 9999998777766555555555555555
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=3.4e-14 Score=127.20 Aligned_cols=105 Identities=13% Similarity=0.178 Sum_probs=87.4
Q ss_pred CCCCCccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhh
Q 036143 2 LERVPSLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAA 81 (355)
Q Consensus 2 l~~lP~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l 81 (355)
++.+|.+..+++|++|++++|.+..+|. ++.+++|++|++++|.+..+| .+ +++++|++|++++|.. ..++ .+
T Consensus 53 i~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~-~~l~~L~~L~l~~n~l---~~~~-~l 125 (308)
T 1h6u_A 53 VTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AI-AGLQSIKTLDLTSTQI---TDVT-PL 125 (308)
T ss_dssp CCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GG-TTCTTCCEEECTTSCC---CCCG-GG
T ss_pred ccCchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hh-cCCCCCCEEECCCCCC---CCch-hh
Confidence 5677888999999999999999999987 999999999999999999887 45 9999999999999765 3355 69
Q ss_pred cccccccceEEEeccCccccccccccccccccc
Q 036143 82 RSSDRLDTFVGYFSKLDDFNTYVKSSDGQRSKH 114 (355)
Q Consensus 82 ~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 114 (355)
+.+++|++|++..+....... ++.++.|+.|.
T Consensus 126 ~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~ 157 (308)
T 1h6u_A 126 AGLSNLQVLYLDLNQITNISP-LAGLTNLQYLS 157 (308)
T ss_dssp TTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEE
T ss_pred cCCCCCCEEECCCCccCcCcc-ccCCCCccEEE
Confidence 999999999998777655433 55555555555
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=5.1e-14 Score=124.53 Aligned_cols=96 Identities=15% Similarity=0.081 Sum_probs=75.5
Q ss_pred ceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccccccceEEEe
Q 036143 15 QCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLDTFVGYF 94 (355)
Q Consensus 15 ~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L~l~~ 94 (355)
++++.++++++.+|..+ ..+|++|++++|.+..+|.+.++++++|++|+++++.. ...... .+..+++|++|++..
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~-~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL-ARIDAA-AFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-CEECTT-TTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCcc-ceeCHh-hcCCccCCCEEeCCC
Confidence 68999999999999765 46999999999999999876559999999999998643 333344 789999999999987
Q ss_pred cc-Cccc-cccccccccccccc
Q 036143 95 SK-LDDF-NTYVKSSDGQRSKH 114 (355)
Q Consensus 95 ~~-~~~~-~~~~~~l~~L~~L~ 114 (355)
+. .... ...+..++.|+.|.
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCCccccCHHHhcCCcCCCEEE
Confidence 75 5444 34466666666665
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.54 E-value=8.9e-14 Score=119.75 Aligned_cols=224 Identities=10% Similarity=0.083 Sum_probs=137.9
Q ss_pred CccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccc
Q 036143 6 PSLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSD 85 (355)
Q Consensus 6 P~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~ 85 (355)
|..|.+...+..++...+++.+|. +.. +|++|++++|.++.+|...++.+++|++|+++++......... .+..++
T Consensus 5 p~~C~C~~~~~~~v~c~~l~~ip~-~~~--~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~-~f~~l~ 80 (239)
T 2xwt_C 5 SPPCECHQEEDFRVTCKDIQRIPS-LPP--STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESH-SFYNLS 80 (239)
T ss_dssp SSSCSEEECSTTEEEECSCSSCCC-CCT--TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTT-TEESCT
T ss_pred CCCCeeCCCCcceeEccCccccCC-CCC--cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHh-HcCCCc
Confidence 445566554555544446888998 544 8999999999999999865599999999999987523333333 688999
Q ss_pred cccceEEEe-ccCcccc-ccccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCccCCCccccCc
Q 036143 86 RLDTFVGYF-SKLDDFN-TYVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICEREGVTIVLP 163 (355)
Q Consensus 86 ~L~~L~l~~-~~~~~~~-~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~~~~~~~~~ 163 (355)
+|++|++.. +...... ..+..++.|+.|. +....+.+
T Consensus 81 ~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~-------l~~n~l~~---------------------------------- 119 (239)
T 2xwt_C 81 KVTHIEIRNTRNLTYIDPDALKELPLLKFLG-------IFNTGLKM---------------------------------- 119 (239)
T ss_dssp TCCEEEEEEETTCCEECTTSEECCTTCCEEE-------EEEECCCS----------------------------------
T ss_pred CCcEEECCCCCCeeEcCHHHhCCCCCCCEEe-------CCCCCCcc----------------------------------
Confidence 999999987 6666554 2355555565555 22222111
Q ss_pred hhHHHHHhhcccccccccccccccccccccccCCCcc---EEeeccCCCccccchHHHHhhcCCCC-eEEEecCCCCcee
Q 036143 164 KDVQGLIMRDIEDVTSLNDVFSKEQGLVNAAKFSHLK---ALWFSYCPNLQKLFSLQLLAALQNLE-FLVVQSCNRNEEI 239 (355)
Q Consensus 164 ~~L~~Ll~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~---~L~l~~~~~l~~~~~~~~l~~L~~L~-~L~l~~~~~l~~i 239 (355)
++.+ ..+++|+ +|+++++.+++.+.+. .+..+++|+ .|+++++ .+..+
T Consensus 120 ----------------lp~~----------~~l~~L~~L~~L~l~~N~~l~~i~~~-~~~~l~~L~~~L~l~~n-~l~~i 171 (239)
T 2xwt_C 120 ----------------FPDL----------TKVYSTDIFFILEITDNPYMTSIPVN-AFQGLCNETLTLKLYNN-GFTSV 171 (239)
T ss_dssp ----------------CCCC----------TTCCBCCSEEEEEEESCTTCCEECTT-TTTTTBSSEEEEECCSC-CCCEE
T ss_pred ----------------cccc----------ccccccccccEEECCCCcchhhcCcc-cccchhcceeEEEcCCC-CCccc
Confidence 0110 1233333 7777777555554332 255677777 7777654 34455
Q ss_pred cccCcchhhhhcccccccccCcccceeecccccccceecCCCceec-C-CCceEEEEcCCCCccccccCCCCCCCCCCCC
Q 036143 240 VEVNDEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAVLI-C-NSLQEIQITPSCPKLKRLSLRLPPLDNGQPS 317 (355)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~-~-~~L~~L~i~~~c~~L~~lp~~~~~l~~~~~~ 317 (355)
+. .....++|++|++.+++.++.++. ..+. + ++|+.|++. + ..++.+|.. .
T Consensus 172 ~~--------------~~~~~~~L~~L~L~~n~~l~~i~~--~~~~~l~~~L~~L~l~-~-N~l~~l~~~--~------- 224 (239)
T 2xwt_C 172 QG--------------YAFNGTKLDAVYLNKNKYLTVIDK--DAFGGVYSGPSLLDVS-Q-TSVTALPSK--G------- 224 (239)
T ss_dssp CT--------------TTTTTCEEEEEECTTCTTCCEECT--TTTTTCSBCCSEEECT-T-CCCCCCCCT--T-------
T ss_pred CH--------------hhcCCCCCCEEEcCCCCCcccCCH--HHhhccccCCcEEECC-C-CccccCChh--H-------
Confidence 43 111226777777777765666654 2222 3 577777775 4 456666643 2
Q ss_pred CCCCeeEEEehhh
Q 036143 318 PSPALEVIKIRKE 330 (355)
Q Consensus 318 ~~~~L~~l~~~~~ 330 (355)
+++|+.+++...
T Consensus 225 -~~~L~~L~l~~~ 236 (239)
T 2xwt_C 225 -LEHLKELIARNT 236 (239)
T ss_dssp -CTTCSEEECTTC
T ss_pred -hccCceeeccCc
Confidence 336777766443
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1.2e-14 Score=127.72 Aligned_cols=209 Identities=17% Similarity=0.139 Sum_probs=129.2
Q ss_pred ccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhccccc
Q 036143 7 SLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDR 86 (355)
Q Consensus 7 ~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 86 (355)
....+++|+.|++++|.++.++ .++.+++|++|++++|.+..++ .+ +++++|++|+++++.. ...... .++.+++
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l-~~l~~L~~L~L~~n~l-~~~~~~-~~~~l~~ 110 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-AL-KELTNLTYLILTGNQL-QSLPNG-VFDKLTN 110 (272)
T ss_dssp CHHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GG-TTCTTCCEEECTTSCC-CCCCTT-TTTTCTT
T ss_pred ccccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hh-cCCCCCCEEECCCCcc-CccChh-HhcCCcC
Confidence 4556778888888888877765 5788888888888888877765 45 8888888888887643 222222 4677888
Q ss_pred ccceEEEeccCcccccc-ccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCccCCCccccCchh
Q 036143 87 LDTFVGYFSKLDDFNTY-VKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICEREGVTIVLPKD 165 (355)
Q Consensus 87 L~~L~l~~~~~~~~~~~-~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~~~~~~~~~~~ 165 (355)
|++|++..+........ ++.++.|+.|. +.++.+.+...
T Consensus 111 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~--------------------------------L~~n~l~~~~~-------- 150 (272)
T 3rfs_A 111 LKELVLVENQLQSLPDGVFDKLTNLTYLN--------------------------------LAHNQLQSLPK-------- 150 (272)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEE--------------------------------CCSSCCCCCCT--------
T ss_pred CCEEECCCCcCCccCHHHhccCCCCCEEE--------------------------------CCCCccCccCH--------
Confidence 88888876655544322 34444444444 22222211000
Q ss_pred HHHHHhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCceecccCcc
Q 036143 166 VQGLIMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVNDE 245 (355)
Q Consensus 166 L~~Ll~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~~~~~~ 245 (355)
.. ...+++|++|+++++ +++.+.+ ..+..+++|+.|+++++. +..++.
T Consensus 151 ----------------~~---------~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~---- 198 (272)
T 3rfs_A 151 ----------------GV---------FDKLTNLTELDLSYN-QLQSLPE-GVFDKLTQLKDLRLYQNQ-LKSVPD---- 198 (272)
T ss_dssp ----------------TT---------TTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CSCCCT----
T ss_pred ----------------HH---------hccCccCCEEECCCC-CcCccCH-HHhcCCccCCEEECCCCc-CCccCH----
Confidence 00 035677888888888 4555433 225677888888888654 333332
Q ss_pred hhhhhcccccccccCcccceeecccccccceecCCCceecCCCceEEEEcCCCCccccccCCCCCC
Q 036143 246 ETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAVLICNSLQEIQITPSCPKLKRLSLRLPPL 311 (355)
Q Consensus 246 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~~~L~~L~i~~~c~~L~~lp~~~~~l 311 (355)
..+..+++|++|++.+++.. ..+++|+.+.++ .+.--..+|..++.+
T Consensus 199 ---------~~~~~l~~L~~L~l~~N~~~---------~~~~~l~~l~~~-~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 199 ---------GVFDRLTSLQYIWLHDNPWD---------CTCPGIRYLSEW-INKHSGVVRNSAGSV 245 (272)
T ss_dssp ---------TTTTTCTTCCEEECCSSCBC---------CCTTTTHHHHHH-HHHTGGGBBCTTSCB
T ss_pred ---------HHHhCCcCCCEEEccCCCcc---------ccCcHHHHHHHH-HHhCCCcccCccccc
Confidence 14567888888888877521 223467777665 554445677666544
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.52 E-value=6.8e-14 Score=136.47 Aligned_cols=237 Identities=16% Similarity=0.138 Sum_probs=143.0
Q ss_pred CCCCCC-ccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhH
Q 036143 1 RLERVP-SLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQE 79 (355)
Q Consensus 1 ~l~~lP-~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~ 79 (355)
.|+.+| .+. ++|++|++++|.++.+|. .+.+|++|++++|.+..+|. .+++|++|++++|.. ..++
T Consensus 51 ~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l---~~l~- 117 (622)
T 3g06_A 51 GLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSNPL---THLP- 117 (622)
T ss_dssp CCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSCCC---CCCC-
T ss_pred CcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCCcC---CCCC-
Confidence 367788 665 799999999999999987 67899999999999998886 668899999988654 3333
Q ss_pred hhcccccccceEEEeccCcccccccccccccccccccccc-c-------eeEeecCCCccccceecccCCccEEEEeccC
Q 036143 80 AARSSDRLDTFVGYFSKLDDFNTYVKSSDGQRSKHFHFQV-S-------TVYNGSAANTRFYSFLRTREANKSVCFYGCK 151 (355)
Q Consensus 80 ~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~~~~~-~-------~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~ 151 (355)
. .+++|++|++..+....++..+ +.|+.|....+- . .+....+.++.....-.....++.+.++++.
T Consensus 118 ~--~l~~L~~L~L~~N~l~~lp~~l---~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~ 192 (622)
T 3g06_A 118 A--LPSGLCKLWIFGNQLTSLPVLP---PGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQ 192 (622)
T ss_dssp C--CCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC
T ss_pred C--CCCCcCEEECCCCCCCcCCCCC---CCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCC
Confidence 2 5677778877766655544322 444444421110 0 0000001111000000011234444444444
Q ss_pred CccCCCccccCchhHHHH-HhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEE
Q 036143 152 ICEREGVTIVLPKDVQGL-IMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVV 230 (355)
Q Consensus 152 ~~~~~~~~~~~~~~L~~L-l~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l 230 (355)
+.+.. ..+++|+.| +.++ .++ .++ ..+++|+.|+++++ +++.+. ..+++|+.|++
T Consensus 193 l~~l~----~~~~~L~~L~L~~N--~l~---~l~---------~~~~~L~~L~Ls~N-~L~~lp-----~~l~~L~~L~L 248 (622)
T 3g06_A 193 LASLP----TLPSELYKLWAYNN--RLT---SLP---------ALPSGLKELIVSGN-RLTSLP-----VLPSELKELMV 248 (622)
T ss_dssp CSCCC----CCCTTCCEEECCSS--CCS---SCC---------CCCTTCCEEECCSS-CCSCCC-----CCCTTCCEEEC
T ss_pred CCCCC----CccchhhEEECcCC--ccc---ccC---------CCCCCCCEEEccCC-ccCcCC-----CCCCcCcEEEC
Confidence 43321 122344444 4433 111 121 24578999999988 566533 45688999999
Q ss_pred ecCCCCceecccCcchhhhhcccccccccCcccceeecccccccceecCCCceecCCCceEEEEcCCCCcc
Q 036143 231 QSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAVLICNSLQEIQITPSCPKL 301 (355)
Q Consensus 231 ~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~~~L~~L~i~~~c~~L 301 (355)
+++ .+..++ . .+++|++|+++++ .+..++. ....+++|+.|++. +++--
T Consensus 249 s~N-~L~~lp---------------~--~~~~L~~L~Ls~N-~L~~lp~--~l~~l~~L~~L~L~-~N~l~ 297 (622)
T 3g06_A 249 SGN-RLTSLP---------------M--LPSGLLSLSVYRN-QLTRLPE--SLIHLSSETTVNLE-GNPLS 297 (622)
T ss_dssp CSS-CCSCCC---------------C--CCTTCCEEECCSS-CCCSCCG--GGGGSCTTCEEECC-SCCCC
T ss_pred CCC-CCCcCC---------------c--ccccCcEEeCCCC-CCCcCCH--HHhhccccCEEEec-CCCCC
Confidence 875 455554 2 6788999999887 5666655 33346799999997 77543
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=3.4e-14 Score=139.31 Aligned_cols=110 Identities=19% Similarity=0.240 Sum_probs=77.6
Q ss_pred ccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCceecccCcchhhhhcccccccccCcccceeecccccc
Q 036143 194 AKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPE 273 (355)
Q Consensus 194 ~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 273 (355)
..++.++.|+++++.......+. .+..+++|+.|+++++. +..++. ..+..+++|++|+|+++ .
T Consensus 466 ~~~~~L~~L~Ls~N~~~~~~~~~-~~~~l~~L~~L~Ls~N~-L~~l~~-------------~~f~~l~~L~~L~Ls~N-~ 529 (635)
T 4g8a_A 466 NGLSSLEVLKMAGNSFQENFLPD-IFTELRNLTFLDLSQCQ-LEQLSP-------------TAFNSLSSLQVLNMSHN-N 529 (635)
T ss_dssp TTCTTCCEEECTTCEEGGGEECS-CCTTCTTCCEEECTTSC-CCEECT-------------TTTTTCTTCCEEECTTS-C
T ss_pred ccchhhhhhhhhhcccccccCch-hhhhccccCEEECCCCc-cCCcCh-------------HHHcCCCCCCEEECCCC-c
Confidence 46788999999998655554333 26789999999999864 555532 16778999999999987 4
Q ss_pred cceecCCCceec-CCCceEEEEcCCCCccccc-cCCCCCCCCCCCCCCCCeeEEEehhh
Q 036143 274 LKSVCSDNAVLI-CNSLQEIQITPSCPKLKRL-SLRLPPLDNGQPSPSPALEVIKIRKE 330 (355)
Q Consensus 274 l~~i~~~~~~l~-~~~L~~L~i~~~c~~L~~l-p~~~~~l~~~~~~~~~~L~~l~~~~~ 330 (355)
+..+.. ..+. +++|++|+++ ++ ++..+ |..+..+ +++|+.|++..+
T Consensus 530 l~~l~~--~~~~~l~~L~~L~Ls-~N-~l~~~~~~~l~~l-------~~~L~~L~L~~N 577 (635)
T 4g8a_A 530 FFSLDT--FPYKCLNSLQVLDYS-LN-HIMTSKKQELQHF-------PSSLAFLNLTQN 577 (635)
T ss_dssp CCBCCC--GGGTTCTTCCEEECT-TS-CCCBCCSSCTTCC-------CTTCCEEECTTC
T ss_pred CCCCCh--hHHhCCCCCCEEECC-CC-cCCCCCHHHHHhh-------hCcCCEEEeeCC
Confidence 666655 3332 6799999996 55 56555 4455443 238999998433
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-14 Score=131.89 Aligned_cols=100 Identities=9% Similarity=0.012 Sum_probs=61.7
Q ss_pred cccceecCCCccccccCcccccCcccceecccCccccc--ccchhhhcCCCcceeeecccCCccccchhHhhcccccccc
Q 036143 12 LALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIK--FPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLDT 89 (355)
Q Consensus 12 ~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~--lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~ 89 (355)
.++++|++++|.+...+..+..+.+|++|++++|.+.. +|..+ +++++|++|++++|. .....+. .++.+++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~-~~~~~L~~L~L~~~~-l~~~~~~-~l~~~~~L~~ 146 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGIL-SQCSKLQNLSLEGLR-LSDPIVN-TLAKNSNLVR 146 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHH-TTBCCCSEEECTTCB-CCHHHHH-HHTTCTTCSE
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHH-hhCCCCCEEeCcCcc-cCHHHHH-HHhcCCCCCE
Confidence 66777777777776665566677777777777776553 55555 777777777777653 2223333 6777777777
Q ss_pred eEEEec-cCcc--ccccccccccccccc
Q 036143 90 FVGYFS-KLDD--FNTYVKSSDGQRSKH 114 (355)
Q Consensus 90 L~l~~~-~~~~--~~~~~~~l~~L~~L~ 114 (355)
|++..+ ...+ ....++.++.|+.|.
T Consensus 147 L~L~~~~~l~~~~l~~~~~~~~~L~~L~ 174 (336)
T 2ast_B 147 LNLSGCSGFSEFALQTLLSSCSRLDELN 174 (336)
T ss_dssp EECTTCBSCCHHHHHHHHHHCTTCCEEE
T ss_pred EECCCCCCCCHHHHHHHHhcCCCCCEEc
Confidence 777655 2332 222344455555555
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.50 E-value=7.6e-14 Score=123.92 Aligned_cols=100 Identities=17% Similarity=0.180 Sum_probs=79.0
Q ss_pred ccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhccccc
Q 036143 7 SLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDR 86 (355)
Q Consensus 7 ~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 86 (355)
.+.++.+|++|++++|.+..+| .++.+.+|++|++++|.+..++. + +++++|++|+++++.. ..++ .++.+++
T Consensus 41 ~~~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l-~~l~~L~~L~l~~n~l---~~~~-~l~~l~~ 113 (291)
T 1h6t_A 41 TQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-L-ANLKNLGWLFLDENKV---KDLS-SLKDLKK 113 (291)
T ss_dssp CHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-G-TTCTTCCEEECCSSCC---CCGG-GGTTCTT
T ss_pred chhhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-c-ccCCCCCEEECCCCcC---CCCh-hhccCCC
Confidence 5667889999999999998886 48899999999999999998887 5 9999999999998754 4456 7899999
Q ss_pred ccceEEEeccCccccccccccccccccc
Q 036143 87 LDTFVGYFSKLDDFNTYVKSSDGQRSKH 114 (355)
Q Consensus 87 L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 114 (355)
|++|++..+..... ..+..++.|+.|.
T Consensus 114 L~~L~L~~n~i~~~-~~l~~l~~L~~L~ 140 (291)
T 1h6t_A 114 LKSLSLEHNGISDI-NGLVHLPQLESLY 140 (291)
T ss_dssp CCEEECTTSCCCCC-GGGGGCTTCCEEE
T ss_pred CCEEECCCCcCCCC-hhhcCCCCCCEEE
Confidence 99999976666543 2344444444444
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.50 E-value=6.2e-14 Score=126.05 Aligned_cols=95 Identities=16% Similarity=0.208 Sum_probs=74.6
Q ss_pred ccccccceecCCCccccccC-cccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccccc
Q 036143 9 AKLLALQCLDLEYTAIKEVP-EGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRL 87 (355)
Q Consensus 9 ~~l~~L~~L~L~~~~~~~lP-~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L 87 (355)
..+++|++|++++|.++.++ ..++.+.+|++|++++|.+..++. + +.+++|++|+++++.. . .+...++|
T Consensus 31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~-~~l~~L~~L~Ls~n~l------~-~l~~~~~L 101 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-L-ESLSTLRTLDLNNNYV------Q-ELLVGPSI 101 (317)
T ss_dssp TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-E-TTCTTCCEEECCSSEE------E-EEEECTTC
T ss_pred ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-h-hhcCCCCEEECcCCcc------c-cccCCCCc
Confidence 34679999999999999775 678999999999999999987776 5 9999999999998643 2 34456899
Q ss_pred cceEEEeccCccccccccccccccccc
Q 036143 88 DTFVGYFSKLDDFNTYVKSSDGQRSKH 114 (355)
Q Consensus 88 ~~L~l~~~~~~~~~~~~~~l~~L~~L~ 114 (355)
++|++..+....... ..++.|+.|.
T Consensus 102 ~~L~l~~n~l~~~~~--~~~~~L~~L~ 126 (317)
T 3o53_A 102 ETLHAANNNISRVSC--SRGQGKKNIY 126 (317)
T ss_dssp CEEECCSSCCSEEEE--CCCSSCEEEE
T ss_pred CEEECCCCccCCcCc--cccCCCCEEE
Confidence 999998777665442 2345566665
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.50 E-value=5.2e-15 Score=133.99 Aligned_cols=213 Identities=19% Similarity=0.170 Sum_probs=142.7
Q ss_pred ccccccccceecCCCccccc--cCcccccCcccceecccCcccc-cccchhhhcCCCcceeeecccCCccccchhHhhcc
Q 036143 7 SLAKLLALQCLDLEYTAIKE--VPEGMEMLENLVHLTIYSKMLI-KFPAGILPKLCNLYSLRLNWGSETSRETVQEAARS 83 (355)
Q Consensus 7 ~i~~l~~L~~L~L~~~~~~~--lP~~i~~L~~L~~L~l~~~~~~-~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~ 83 (355)
.+..+.+|++|++++|.+.. +|..++.+++|++|++++|.+. ..|..+ +++++|++|++++|.......++..+..
T Consensus 88 ~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l-~~~~~L~~L~L~~~~~l~~~~l~~~~~~ 166 (336)
T 2ast_B 88 EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTL-AKNSNLVRLNLSGCSGFSEFALQTLLSS 166 (336)
T ss_dssp SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHH-TTCTTCSEEECTTCBSCCHHHHHHHHHH
T ss_pred hhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHH-hcCCCCCEEECCCCCCCCHHHHHHHHhc
Confidence 67789999999999998873 8888999999999999999877 456666 9999999999999855454445646889
Q ss_pred cccccceEEEec-cCcc--ccccccccc-cccccccccccceeEeecCCCccccceecccCCccEEEEeccCCccCCCcc
Q 036143 84 SDRLDTFVGYFS-KLDD--FNTYVKSSD-GQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICEREGVT 159 (355)
Q Consensus 84 L~~L~~L~l~~~-~~~~--~~~~~~~l~-~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~~~~~ 159 (355)
+++|++|++.++ ...+ ....+..++ .|+.|. ++++.. .+..
T Consensus 167 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~------------l~~~~~------------------~~~~----- 211 (336)
T 2ast_B 167 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN------------LSGYRK------------------NLQK----- 211 (336)
T ss_dssp CTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE------------CCSCGG------------------GSCH-----
T ss_pred CCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEE------------eCCCcc------------------cCCH-----
Confidence 999999999877 5543 233345555 555555 332210 0000
Q ss_pred ccCchhHHHHHhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCcee
Q 036143 160 IVLPKDVQGLIMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEI 239 (355)
Q Consensus 160 ~~~~~~L~~Ll~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i 239 (355)
..++... ..+++|++|++++|..+++.... .+..+++|++|++++|......
T Consensus 212 ------------------~~l~~~~---------~~~~~L~~L~l~~~~~l~~~~~~-~l~~l~~L~~L~l~~~~~~~~~ 263 (336)
T 2ast_B 212 ------------------SDLSTLV---------RRCPNLVHLDLSDSVMLKNDCFQ-EFFQLNYLQHLSLSRCYDIIPE 263 (336)
T ss_dssp ------------------HHHHHHH---------HHCTTCSEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTCTTCCGG
T ss_pred ------------------HHHHHHH---------hhCCCCCEEeCCCCCcCCHHHHH-HHhCCCCCCEeeCCCCCCCCHH
Confidence 0000100 35678999999999756653333 3678899999999988633211
Q ss_pred cccCcchhhhhcccccccccCcccceeecccccccceecCCC-ceecCCCceEEEEcCCCCccccc
Q 036143 240 VEVNDEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDN-AVLICNSLQEIQITPSCPKLKRL 304 (355)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~-~~l~~~~L~~L~i~~~c~~L~~l 304 (355)
. ...+..+++|++|++.+| +.... ..+. .+|+.|++ +|+.+...
T Consensus 264 ~-------------~~~l~~~~~L~~L~l~~~-----i~~~~~~~l~-~~l~~L~l--~~n~l~~~ 308 (336)
T 2ast_B 264 T-------------LLELGEIPTLKTLQVFGI-----VPDGTLQLLK-EALPHLQI--NCSHFTTI 308 (336)
T ss_dssp G-------------GGGGGGCTTCCEEECTTS-----SCTTCHHHHH-HHSTTSEE--SCCCSCCT
T ss_pred H-------------HHHHhcCCCCCEEeccCc-----cCHHHHHHHH-hhCcceEE--ecccCccc
Confidence 0 014567999999999988 22210 1121 13455556 56666654
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.8e-14 Score=127.15 Aligned_cols=224 Identities=15% Similarity=0.054 Sum_probs=138.5
Q ss_pred CC-ccccccccceecCCCcccc--ccCcccc-------cCcccceecccCcccc-cccchhh-hcCCCcceeeecccCCc
Q 036143 5 VP-SLAKLLALQCLDLEYTAIK--EVPEGME-------MLENLVHLTIYSKMLI-KFPAGIL-PKLCNLYSLRLNWGSET 72 (355)
Q Consensus 5 lP-~i~~l~~L~~L~L~~~~~~--~lP~~i~-------~L~~L~~L~l~~~~~~-~lP~~i~-~~L~~L~~L~l~~~~~~ 72 (355)
+| .+... |++|++++|.+. .+|..+. ++.+|++|++++|.+. .+|..++ +.+++|++|+++++...
T Consensus 57 ~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 134 (312)
T 1wwl_A 57 DLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWA 134 (312)
T ss_dssp CCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCS
T ss_pred cHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCc
Confidence 36 55544 888888888774 4666665 6788888888888776 5676643 77888888888876442
Q ss_pred cccchhHhhccc-----ccccceEEEeccCcccc-ccccccccccccccccccceeEeecCCCccc------ccee--cc
Q 036143 73 SRETVQEAARSS-----DRLDTFVGYFSKLDDFN-TYVKSSDGQRSKHFHFQVSTVYNGSAANTRF------YSFL--RT 138 (355)
Q Consensus 73 ~~~~~~~~l~~L-----~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~------~~~l--~~ 138 (355)
.. .. .++.+ ++|++|++..+...... ..++.++.|+.|. ++++.. +..+ ..
T Consensus 135 -~~-~~-~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~------------Ls~N~l~~~~~~~~~~~~~~ 199 (312)
T 1wwl_A 135 -TR-DA-WLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLD------------LSDNPELGERGLISALCPLK 199 (312)
T ss_dssp -SS-SS-HHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEE------------CCSCTTCHHHHHHHHSCTTS
T ss_pred -ch-hH-HHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEE------------CCCCCcCcchHHHHHHHhcc
Confidence 22 22 56665 78888888877776655 5567777777776 322221 1111 22
Q ss_pred cCCccEEEEeccCCccCCCccccCchhHHHHHhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHH
Q 036143 139 REANKSVCFYGCKICEREGVTIVLPKDVQGLIMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQL 218 (355)
Q Consensus 139 ~~~~~~~~L~~l~~~~~~~~~~~~~~~L~~Ll~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 218 (355)
...++.++++++.+... +..+. . ....+++|++|+++++ +++...+...
T Consensus 200 l~~L~~L~L~~N~l~~~-------------------------~~~~~---~--~~~~l~~L~~L~Ls~N-~l~~~~~~~~ 248 (312)
T 1wwl_A 200 FPTLQVLALRNAGMETP-------------------------SGVCS---A--LAAARVQLQGLDLSHN-SLRDAAGAPS 248 (312)
T ss_dssp CTTCCEEECTTSCCCCH-------------------------HHHHH---H--HHHTTCCCSEEECTTS-CCCSSCCCSC
T ss_pred CCCCCEEECCCCcCcch-------------------------HHHHH---H--HHhcCCCCCEEECCCC-cCCcccchhh
Confidence 23344445544443311 00000 0 0024678999999998 4555333222
Q ss_pred HhhcCCCCeEEEecCCCCceecccCcchhhhhcccccccccCcccceeecccccccceecCCCceecCCCceEEEEcCCC
Q 036143 219 LAALQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAVLICNSLQEIQITPSC 298 (355)
Q Consensus 219 l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~~~L~~L~i~~~c 298 (355)
+..+++|+.|+++++. +.+++. .+. ++|++|+++++ .++.++. ...+++|++|++. +.
T Consensus 249 ~~~l~~L~~L~Ls~N~-l~~ip~--------------~~~--~~L~~L~Ls~N-~l~~~p~---~~~l~~L~~L~L~-~N 306 (312)
T 1wwl_A 249 CDWPSQLNSLNLSFTG-LKQVPK--------------GLP--AKLSVLDLSYN-RLDRNPS---PDELPQVGNLSLK-GN 306 (312)
T ss_dssp CCCCTTCCEEECTTSC-CSSCCS--------------SCC--SEEEEEECCSS-CCCSCCC---TTTSCEEEEEECT-TC
T ss_pred hhhcCCCCEEECCCCc-cChhhh--------------hcc--CCceEEECCCC-CCCCChh---HhhCCCCCEEecc-CC
Confidence 4567899999999754 446654 333 89999999987 4565532 2235689999986 54
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=3e-13 Score=119.03 Aligned_cols=95 Identities=11% Similarity=0.000 Sum_probs=71.3
Q ss_pred eecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccccccceEEEec
Q 036143 16 CLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLDTFVGYFS 95 (355)
Q Consensus 16 ~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L~l~~~ 95 (355)
+.+..+.++..+|..+. .+|++|++++|.+..+|...++++++|++|+++++.. ...... .++.+++|++|++..+
T Consensus 11 ~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~-~~~~l~~L~~L~L~~n 86 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI-QTIEDG-AYQSLSHLSTLILTGN 86 (276)
T ss_dssp EEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCC-CEECTT-TTTTCTTCCEEECTTC
T ss_pred eEEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcC-CccCHH-HccCCcCCCEEECCCC
Confidence 45556667888998775 5899999999999999885449999999999998754 333333 6889999999999877
Q ss_pred cCcccc-ccccccccccccc
Q 036143 96 KLDDFN-TYVKSSDGQRSKH 114 (355)
Q Consensus 96 ~~~~~~-~~~~~l~~L~~L~ 114 (355)
...... ..+..+..|+.|.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 87 PIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp CCCEECTTTTTTCTTCCEEE
T ss_pred ccCccChhhhcCCccccEEE
Confidence 665544 3455566666555
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.9e-13 Score=118.81 Aligned_cols=187 Identities=19% Similarity=0.173 Sum_probs=129.5
Q ss_pred CCCCCC-ccccccccceecCCCccccccCc-ccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchh
Q 036143 1 RLERVP-SLAKLLALQCLDLEYTAIKEVPE-GMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQ 78 (355)
Q Consensus 1 ~l~~lP-~i~~l~~L~~L~L~~~~~~~lP~-~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~ 78 (355)
+++.+| .+. .+|++|++++|.++.+|. .++++.+|++|++++|.+..+|.++++++++|++|+++++.. ......
T Consensus 27 ~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l-~~~~~~ 103 (270)
T 2o6q_A 27 KLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL-QALPIG 103 (270)
T ss_dssp CCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCC-CCCCTT
T ss_pred CCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcC-CcCCHh
Confidence 366788 564 689999999999998865 689999999999999999999998778999999999998654 333333
Q ss_pred HhhcccccccceEEEeccCccccc-cccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCccCCC
Q 036143 79 EAARSSDRLDTFVGYFSKLDDFNT-YVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICEREG 157 (355)
Q Consensus 79 ~~l~~L~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~~~ 157 (355)
.+..+++|++|++..+....... .++.++.|+.|. + +++.+...
T Consensus 104 -~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~------------L--------------------s~n~l~~~-- 148 (270)
T 2o6q_A 104 -VFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLS------------L--------------------GYNELQSL-- 148 (270)
T ss_dssp -TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE------------C--------------------CSSCCCCC--
T ss_pred -HcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEE------------C--------------------CCCcCCcc--
Confidence 67889999999998776655432 234444444444 2 22222110
Q ss_pred ccccCchhHHHHHhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCc
Q 036143 158 VTIVLPKDVQGLIMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNE 237 (355)
Q Consensus 158 ~~~~~~~~L~~Ll~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~ 237 (355)
+.. ....+++|++|+++++ +++.+.+. .+..+++|++|+++++ .+.
T Consensus 149 -----------------------~~~--------~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~ 194 (270)
T 2o6q_A 149 -----------------------PKG--------VFDKLTSLKELRLYNN-QLKRVPEG-AFDKLTELKTLKLDNN-QLK 194 (270)
T ss_dssp -----------------------CTT--------TTTTCTTCCEEECCSS-CCSCCCTT-TTTTCTTCCEEECCSS-CCS
T ss_pred -----------------------CHh--------HccCCcccceeEecCC-cCcEeChh-HhccCCCcCEEECCCC-cCC
Confidence 000 0035678888888888 55554332 2567888888888875 444
Q ss_pred eecccCcchhhhhcccccccccCcccceeeccccc
Q 036143 238 EIVEVNDEETQKELGISAITITLPRLKKLWLSFLP 272 (355)
Q Consensus 238 ~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 272 (355)
.++. ..+..+++|++|++.+++
T Consensus 195 ~~~~-------------~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 195 RVPE-------------GAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CCCT-------------TTTTTCTTCCEEECCSSC
T ss_pred cCCH-------------HHhccccCCCEEEecCCC
Confidence 4442 145577888888888765
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-13 Score=121.56 Aligned_cols=187 Identities=17% Similarity=0.158 Sum_probs=132.2
Q ss_pred CCCCCccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhh
Q 036143 2 LERVPSLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAA 81 (355)
Q Consensus 2 l~~lP~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l 81 (355)
++.++.++.+++|++|++++|.+..++ .++.+++|++|++++|.+..+|...++++++|++|++++|.. ...... .+
T Consensus 53 i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~-~~ 129 (272)
T 3rfs_A 53 IKSVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL-QSLPDG-VF 129 (272)
T ss_dssp CCCCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC-CCCCTT-TT
T ss_pred cccccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcC-CccCHH-Hh
Confidence 456678899999999999999998875 789999999999999999999888669999999999998754 333333 58
Q ss_pred cccccccceEEEeccCcccccc-ccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCccCCCccc
Q 036143 82 RSSDRLDTFVGYFSKLDDFNTY-VKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICEREGVTI 160 (355)
Q Consensus 82 ~~L~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~~~~~~ 160 (355)
+.+++|++|++..+........ ++.++.|+.|. + .++.+.+...
T Consensus 130 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~------------l--------------------~~n~l~~~~~--- 174 (272)
T 3rfs_A 130 DKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELD------------L--------------------SYNQLQSLPE--- 174 (272)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE------------C--------------------CSSCCCCCCT---
T ss_pred ccCCCCCEEECCCCccCccCHHHhccCccCCEEE------------C--------------------CCCCcCccCH---
Confidence 8999999999987776655432 34555555554 2 2222221100
Q ss_pred cCchhHHHHHhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCceec
Q 036143 161 VLPKDVQGLIMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIV 240 (355)
Q Consensus 161 ~~~~~L~~Ll~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~ 240 (355)
.. ...+++|++|+++++ +++.+.+ ..+..+++|+.|++++++-.
T Consensus 175 ---------------------~~---------~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~~~---- 218 (272)
T 3rfs_A 175 ---------------------GV---------FDKLTQLKDLRLYQN-QLKSVPD-GVFDRLTSLQYIWLHDNPWD---- 218 (272)
T ss_dssp ---------------------TT---------TTTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSSCBC----
T ss_pred ---------------------HH---------hcCCccCCEEECCCC-cCCccCH-HHHhCCcCCCEEEccCCCcc----
Confidence 00 035678899999988 5555443 23677899999999876421
Q ss_pred ccCcchhhhhcccccccccCcccceeecccccccceecC
Q 036143 241 EVNDEETQKELGISAITITLPRLKKLWLSFLPELKSVCS 279 (355)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~ 279 (355)
+.+|+|+.|.+..+..-+.++.
T Consensus 219 -----------------~~~~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 219 -----------------CTCPGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp -----------------CCTTTTHHHHHHHHHTGGGBBC
T ss_pred -----------------ccCcHHHHHHHHHHhCCCcccC
Confidence 2566777777766554445544
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-13 Score=131.50 Aligned_cols=102 Identities=15% Similarity=0.134 Sum_probs=80.1
Q ss_pred CCCCC--ccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhH
Q 036143 2 LERVP--SLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQE 79 (355)
Q Consensus 2 l~~lP--~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~ 79 (355)
++.+| .++.+++|++|+|++|.++.++. ++.+++|++|++++|.+..+|. .++|++|++++|... . ++
T Consensus 46 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~~N~l~-~--~~- 115 (487)
T 3oja_A 46 LSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNIS-R--VS- 115 (487)
T ss_dssp CCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECCSSCCC-C--EE-
T ss_pred CCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC-----CCCcCEEECcCCcCC-C--CC-
Confidence 45555 79999999999999999987664 9999999999999999887764 389999999987542 2 22
Q ss_pred hhcccccccceEEEeccCcccc-ccccccccccccc
Q 036143 80 AARSSDRLDTFVGYFSKLDDFN-TYVKSSDGQRSKH 114 (355)
Q Consensus 80 ~l~~L~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~ 114 (355)
...+++|++|++..+...... ..++.++.|+.|.
T Consensus 116 -~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 150 (487)
T 3oja_A 116 -CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLD 150 (487)
T ss_dssp -ECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEE
T ss_pred -ccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEE
Confidence 235688999999888776653 4566677777666
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.4e-13 Score=133.90 Aligned_cols=102 Identities=17% Similarity=0.168 Sum_probs=79.6
Q ss_pred CCccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhccc
Q 036143 5 VPSLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSS 84 (355)
Q Consensus 5 lP~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L 84 (355)
++.+..+.+|++|++++|.+..+| .++.+.+|++|++++|.+..+|. + +++++|++|++++|.. ..++ .++.+
T Consensus 36 ~~~~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l-~~l~~L~~L~Ls~N~l---~~l~-~l~~l 108 (605)
T 1m9s_A 36 AVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-L-TNLKNLGWLFLDENKI---KDLS-SLKDL 108 (605)
T ss_dssp EECHHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-G-GGCTTCCEEECCSSCC---CCCT-TSTTC
T ss_pred ccchhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-h-ccCCCCCEEECcCCCC---CCCh-hhccC
Confidence 335667889999999999988887 68899999999999998888887 5 9999999999998755 3455 78889
Q ss_pred ccccceEEEeccCccccccccccccccccc
Q 036143 85 DRLDTFVGYFSKLDDFNTYVKSSDGQRSKH 114 (355)
Q Consensus 85 ~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 114 (355)
++|++|++..+.+... ..+..++.|+.|.
T Consensus 109 ~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~ 137 (605)
T 1m9s_A 109 KKLKSLSLEHNGISDI-NGLVHLPQLESLY 137 (605)
T ss_dssp TTCCEEECTTSCCCCC-GGGGGCTTCSEEE
T ss_pred CCCCEEEecCCCCCCC-ccccCCCccCEEE
Confidence 9999999876666543 3355555555555
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.41 E-value=2.4e-12 Score=117.34 Aligned_cols=213 Identities=13% Similarity=0.061 Sum_probs=138.2
Q ss_pred ccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhccccc
Q 036143 7 SLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDR 86 (355)
Q Consensus 7 ~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 86 (355)
.+|.+.. ++++.++++++++|..+. .++++|++++|.++.+|.+.|+++++|++|+++++......... .+.++++
T Consensus 5 ~~C~C~~-~~v~C~~~~Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~-~f~~L~~ 80 (350)
T 4ay9_X 5 RICHCSN-RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD-VFSNLPK 80 (350)
T ss_dssp SSSEEET-TEEEEESTTCCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTT-SBCSCTT
T ss_pred CccEeeC-CEEEecCCCCCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChh-Hhhcchh
Confidence 4566654 677778888999998773 58899999999999999876699999999999987543322223 5677888
Q ss_pred ccceEEE-eccCcccc-ccccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCccCCCccccCch
Q 036143 87 LDTFVGY-FSKLDDFN-TYVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICEREGVTIVLPK 164 (355)
Q Consensus 87 L~~L~l~-~~~~~~~~-~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~~~~~~~~~~ 164 (355)
|+++... .+...... ..++.++.|+.|. +.++.+......
T Consensus 81 l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~--------------------------------l~~n~l~~~~~~------ 122 (350)
T 4ay9_X 81 LHEIRIEKANNLLYINPEAFQNLPNLQYLL--------------------------------ISNTGIKHLPDV------ 122 (350)
T ss_dssp CCEEEEEEETTCCEECTTSBCCCTTCCEEE--------------------------------EEEECCSSCCCC------
T ss_pred hhhhhcccCCcccccCchhhhhcccccccc--------------------------------ccccccccCCch------
Confidence 7765543 44444433 2344555555444 222222111000
Q ss_pred hHHHHHhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhc-CCCCeEEEecCCCCceecccC
Q 036143 165 DVQGLIMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAAL-QNLEFLVVQSCNRNEEIVEVN 243 (355)
Q Consensus 165 ~L~~Ll~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L-~~L~~L~l~~~~~l~~i~~~~ 243 (355)
.. ....++..+.+.++.+++.+.... +..+ ..++.|++++ +.++++..
T Consensus 123 -------------------~~--------~~~~~l~~l~l~~~~~i~~l~~~~-f~~~~~~l~~L~L~~-N~i~~i~~-- 171 (350)
T 4ay9_X 123 -------------------HK--------IHSLQKVLLDIQDNINIHTIERNS-FVGLSFESVILWLNK-NGIQEIHN-- 171 (350)
T ss_dssp -------------------TT--------CCBSSCEEEEEESCTTCCEECTTS-STTSBSSCEEEECCS-SCCCEECT--
T ss_pred -------------------hh--------cccchhhhhhhccccccccccccc-hhhcchhhhhhcccc-ccccCCCh--
Confidence 00 122345667777776666654332 3333 4678888885 55677764
Q ss_pred cchhhhhcccccccccCcccceeecccccccceecCCCcee-cCCCceEEEEcCCCCccccccCCC
Q 036143 244 DEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAVL-ICNSLQEIQITPSCPKLKRLSLRL 308 (355)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l-~~~~L~~L~i~~~c~~L~~lp~~~ 308 (355)
.....++|++|.+.++..++.++. +++ .+++|++|++. ++ +++.+|.+.
T Consensus 172 ------------~~f~~~~L~~l~l~~~n~l~~i~~--~~f~~l~~L~~LdLs-~N-~l~~lp~~~ 221 (350)
T 4ay9_X 172 ------------SAFNGTQLDELNLSDNNNLEELPN--DVFHGASGPVILDIS-RT-RIHSLPSYG 221 (350)
T ss_dssp ------------TSSTTEEEEEEECTTCTTCCCCCT--TTTTTEECCSEEECT-TS-CCCCCCSSS
T ss_pred ------------hhccccchhHHhhccCCcccCCCH--HHhccCcccchhhcC-CC-CcCccChhh
Confidence 444667999999998889999987 443 25699999996 54 799998653
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.40 E-value=4e-14 Score=130.81 Aligned_cols=247 Identities=14% Similarity=0.062 Sum_probs=137.3
Q ss_pred CCC-ccccccccceecCCCccccc-----cCcccccCcccceecccCccccc----ccchh------hhcCCCcceeeec
Q 036143 4 RVP-SLAKLLALQCLDLEYTAIKE-----VPEGMEMLENLVHLTIYSKMLIK----FPAGI------LPKLCNLYSLRLN 67 (355)
Q Consensus 4 ~lP-~i~~l~~L~~L~L~~~~~~~-----lP~~i~~L~~L~~L~l~~~~~~~----lP~~i------~~~L~~L~~L~l~ 67 (355)
.++ .+..+++|++|+|++|.+.. ++..+..+++|++|++++|.+.. +|.++ +.++++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 455 67788899999999997763 44557789999999999986553 34443 2688999999999
Q ss_pred ccCCccc--cchhHhhcccccccceEEEeccCccc-----ccccccc---------ccccccccccccceeEeecCCCcc
Q 036143 68 WGSETSR--ETVQEAARSSDRLDTFVGYFSKLDDF-----NTYVKSS---------DGQRSKHFHFQVSTVYNGSAANTR 131 (355)
Q Consensus 68 ~~~~~~~--~~~~~~l~~L~~L~~L~l~~~~~~~~-----~~~~~~l---------~~L~~L~~~~~~~~~~~~~~~~~~ 131 (355)
++..... ..++..+..+++|++|++..+.+... ...+..+ +.|+.|. +....++...
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~-------L~~n~l~~~~ 175 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSII-------CGRNRLENGS 175 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEE-------CCSSCCTGGG
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEE-------CCCCCCCcHH
Confidence 8654221 12333788899999999987766421 1112222 4555555 1112222111
Q ss_pred cc---ceecccCCccEEEEeccCCccCCCccccCchhHHHHHhhcccccccccccccccccccccccCCCccEEeeccCC
Q 036143 132 FY---SFLRTREANKSVCFYGCKICEREGVTIVLPKDVQGLIMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCP 208 (355)
Q Consensus 132 ~~---~~l~~~~~~~~~~L~~l~~~~~~~~~~~~~~~L~~Ll~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~ 208 (355)
.+ ..+.....++.+.+.++.+... .+..++ +.. ...+++|++|++++|.
T Consensus 176 ~~~l~~~l~~~~~L~~L~L~~n~l~~~---------g~~~l~----------~~~---------l~~~~~L~~L~Ls~n~ 227 (386)
T 2ca6_A 176 MKEWAKTFQSHRLLHTVKMVQNGIRPE---------GIEHLL----------LEG---------LAYCQELKVLDLQDNT 227 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCCHH---------HHHHHH----------HTT---------GGGCTTCCEEECCSSC
T ss_pred HHHHHHHHHhCCCcCEEECcCCCCCHh---------HHHHHH----------HHH---------hhcCCCccEEECcCCC
Confidence 11 1122233444455544443311 000000 000 1356778888888884
Q ss_pred Ccccc---chHHHHhhcCCCCeEEEecCCCCceecccCcchhhhhccccccc--ccCcccceeecccccccc----eecC
Q 036143 209 NLQKL---FSLQLLAALQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAIT--ITLPRLKKLWLSFLPELK----SVCS 279 (355)
Q Consensus 209 ~l~~~---~~~~~l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~----~i~~ 279 (355)
++.. .....+..+++|++|++++|........ .++..+ +.+++|++|++++|..-. .++.
T Consensus 228 -l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~----------~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~ 296 (386)
T 2ca6_A 228 -FTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA----------AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT 296 (386)
T ss_dssp -CHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH----------HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH----------HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHH
Confidence 4311 1112356778888888887653222000 000122 347888888888874322 1332
Q ss_pred CCce-ecCCCceEEEEcCCCC
Q 036143 280 DNAV-LICNSLQEIQITPSCP 299 (355)
Q Consensus 280 ~~~~-l~~~~L~~L~i~~~c~ 299 (355)
.. ..+++|++|++. +|+
T Consensus 297 --~l~~~l~~L~~L~l~-~N~ 314 (386)
T 2ca6_A 297 --VIDEKMPDLLFLELN-GNR 314 (386)
T ss_dssp --HHHHHCTTCCEEECT-TSB
T ss_pred --HHHhcCCCceEEEcc-CCc
Confidence 12 125788888887 664
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.40 E-value=1.4e-12 Score=115.63 Aligned_cols=154 Identities=19% Similarity=0.242 Sum_probs=115.9
Q ss_pred CCCCCccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhh
Q 036143 2 LERVPSLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAA 81 (355)
Q Consensus 2 l~~lP~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l 81 (355)
++.+|.++.+++|++|++++|.++.++. ++.+.+|++|++++|.+..+|. + +.+++|++|++++|.. ..++ .+
T Consensus 58 i~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l-~~l~~L~~L~L~~n~i---~~~~-~l 130 (291)
T 1h6t_A 58 IKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-L-KDLKKLKSLSLEHNGI---SDIN-GL 130 (291)
T ss_dssp CCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-G-TTCTTCCEEECTTSCC---CCCG-GG
T ss_pred cccChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-h-ccCCCCCEEECCCCcC---CCCh-hh
Confidence 5667888999999999999999998876 9999999999999999998876 5 9999999999999765 3346 89
Q ss_pred cccccccceEEEeccCccccccccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCccCCCcccc
Q 036143 82 RSSDRLDTFVGYFSKLDDFNTYVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICEREGVTIV 161 (355)
Q Consensus 82 ~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~~~~~~~ 161 (355)
..+++|++|++..+..... ..+..++.|+.|. ++++.+.+
T Consensus 131 ~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~--------------------------------L~~N~l~~------- 170 (291)
T 1h6t_A 131 VHLPQLESLYLGNNKITDI-TVLSRLTKLDTLS--------------------------------LEDNQISD------- 170 (291)
T ss_dssp GGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEE--------------------------------CCSSCCCC-------
T ss_pred cCCCCCCEEEccCCcCCcc-hhhccCCCCCEEE--------------------------------ccCCcccc-------
Confidence 9999999999987766544 3344444444444 22222211
Q ss_pred CchhHHHHHhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCC
Q 036143 162 LPKDVQGLIMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCN 234 (355)
Q Consensus 162 ~~~~L~~Ll~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~ 234 (355)
++.+ ..+++|++|+++++ .++.+.. +..+++|+.|+++++.
T Consensus 171 ------------------~~~l----------~~l~~L~~L~L~~N-~i~~l~~---l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 171 ------------------IVPL----------AGLTKLQNLYLSKN-HISDLRA---LAGLKNLDVLELFSQE 211 (291)
T ss_dssp ------------------CGGG----------TTCTTCCEEECCSS-CCCBCGG---GTTCTTCSEEEEEEEE
T ss_pred ------------------chhh----------cCCCccCEEECCCC-cCCCChh---hccCCCCCEEECcCCc
Confidence 1111 35678899999888 5666432 6788899999998654
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.39 E-value=2.4e-12 Score=114.10 Aligned_cols=197 Identities=14% Similarity=0.098 Sum_probs=124.1
Q ss_pred cccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccccccceEEEeccCccccccccccccc
Q 036143 31 MEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLDTFVGYFSKLDDFNTYVKSSDGQ 110 (355)
Q Consensus 31 i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~L 110 (355)
++++.++++++++++.++.+|.++ . +++++|+++++.. ...... .+..+++|++|++..+.+...... +.++.|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~-~--~~l~~L~L~~N~l-~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL-P--KDTTILHLSENLL-YTFSLA-TLMPYTRLTQLNLDRAELTKLQVD-GTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC-C--TTCCEEECTTSCC-SEEEGG-GGTTCTTCCEEECTTSCCCEEECC-SCCTTC
T ss_pred ccccCCccEEECCCCCCCcCCCCC-C--CCCCEEEcCCCcC-CccCHH-HhhcCCCCCEEECCCCccCcccCC-CCCCcC
Confidence 678889999999999999999977 4 7899999998654 333344 799999999999976665543322 344444
Q ss_pred cccccccccceeEeecCCCccccceecccCCccEEEEeccCCccCCCccccCchhHHHHHhhcccccccccccccccccc
Q 036143 111 RSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICEREGVTIVLPKDVQGLIMRDIEDVTSLNDVFSKEQGL 190 (355)
Q Consensus 111 ~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~~~~~~~~~~~L~~Ll~~~~~~~~~l~~~~~l~~~~ 190 (355)
+.|. ++++.+.. ++...
T Consensus 80 ~~L~--------------------------------Ls~N~l~~-------------------------l~~~~------ 96 (290)
T 1p9a_G 80 GTLD--------------------------------LSHNQLQS-------------------------LPLLG------ 96 (290)
T ss_dssp CEEE--------------------------------CCSSCCSS-------------------------CCCCT------
T ss_pred CEEE--------------------------------CCCCcCCc-------------------------Cchhh------
Confidence 4444 22222111 11100
Q ss_pred cccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCceecccCcchhhhhcccccccccCcccceeeccc
Q 036143 191 VNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSF 270 (355)
Q Consensus 191 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 270 (355)
..+++|++|+++++ +++.+.+. .+..+++|+.|+++++ .+..++. ..+..+++|++|++++
T Consensus 97 ---~~l~~L~~L~l~~N-~l~~l~~~-~~~~l~~L~~L~L~~N-~l~~~~~-------------~~~~~l~~L~~L~L~~ 157 (290)
T 1p9a_G 97 ---QTLPALTVLDVSFN-RLTSLPLG-ALRGLGELQELYLKGN-ELKTLPP-------------GLLTPTPKLEKLSLAN 157 (290)
T ss_dssp ---TTCTTCCEEECCSS-CCCCCCSS-TTTTCTTCCEEECTTS-CCCCCCT-------------TTTTTCTTCCEEECTT
T ss_pred ---ccCCCCCEEECCCC-cCcccCHH-HHcCCCCCCEEECCCC-CCCccCh-------------hhcccccCCCEEECCC
Confidence 34566777777777 45543322 2566777777777764 3444432 0345677777777777
Q ss_pred ccccceecCCCceec-CCCceEEEEcCCCCccccccCCCCCCCCCCCCCCCCeeEEEeh
Q 036143 271 LPELKSVCSDNAVLI-CNSLQEIQITPSCPKLKRLSLRLPPLDNGQPSPSPALEVIKIR 328 (355)
Q Consensus 271 ~~~l~~i~~~~~~l~-~~~L~~L~i~~~c~~L~~lp~~~~~l~~~~~~~~~~L~~l~~~ 328 (355)
+ .++.++. +.+. +++|++|++. ...++.+|.++.... +|+.+++.
T Consensus 158 N-~l~~l~~--~~~~~l~~L~~L~L~--~N~l~~ip~~~~~~~--------~L~~l~L~ 203 (290)
T 1p9a_G 158 N-NLTELPA--GLLNGLENLDTLLLQ--ENSLYTIPKGFFGSH--------LLPFAFLH 203 (290)
T ss_dssp S-CCSCCCT--TTTTTCTTCCEEECC--SSCCCCCCTTTTTTC--------CCSEEECC
T ss_pred C-cCCccCH--HHhcCcCCCCEEECC--CCcCCccChhhcccc--------cCCeEEeC
Confidence 6 4556555 3332 5677777774 346677777665443 67777773
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.37 E-value=2.6e-12 Score=111.37 Aligned_cols=102 Identities=14% Similarity=0.103 Sum_probs=72.9
Q ss_pred ccc-cccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccccc
Q 036143 9 AKL-LALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRL 87 (355)
Q Consensus 9 ~~l-~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L 87 (355)
+.+ ...++++++++.++.+|..+. .++++|++++|.+..++...++++++|++|+++++.. ...... .+..+++|
T Consensus 10 C~C~~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~-~~~~l~~L 85 (251)
T 3m19_A 10 CTCNEGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-QTLSAG-VFDDLTEL 85 (251)
T ss_dssp SEEEGGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC-CCCCTT-TTTTCTTC
T ss_pred eEcCCCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcC-CccCHh-HhccCCcC
Confidence 444 567889999998989988776 5889999999988888776458899999999988644 333333 57888889
Q ss_pred cceEEEeccCccccc-cccccccccccc
Q 036143 88 DTFVGYFSKLDDFNT-YVKSSDGQRSKH 114 (355)
Q Consensus 88 ~~L~l~~~~~~~~~~-~~~~l~~L~~L~ 114 (355)
++|++..+.+..... .++.+..|+.|.
T Consensus 86 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 113 (251)
T 3m19_A 86 GTLGLANNQLASLPLGVFDHLTQLDKLY 113 (251)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CEEECCCCcccccChhHhcccCCCCEEE
Confidence 888887666654432 234444444444
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.36 E-value=4.1e-14 Score=137.89 Aligned_cols=111 Identities=14% Similarity=0.087 Sum_probs=57.0
Q ss_pred cCCCccEEeeccCCC-ccccchHHHHhhcCCCCeEEEecCCCCceecccCcchhhhhcccccccccCcccceeecccccc
Q 036143 195 KFSHLKALWFSYCPN-LQKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPE 273 (355)
Q Consensus 195 ~~~~L~~L~l~~~~~-l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 273 (355)
.+++|++|+++.|.+ +.+.........+++|+.|++++|...... .......+++|++|++++|+
T Consensus 434 ~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-------------~~~~~~~~~~L~~L~l~~n~- 499 (592)
T 3ogk_B 434 GCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEG-------------LMEFSRGCPNLQKLEMRGCC- 499 (592)
T ss_dssp HCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHH-------------HHHHHTCCTTCCEEEEESCC-
T ss_pred hCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHH-------------HHHHHhcCcccCeeeccCCC-
Confidence 356666666665543 333222222233666777777655421111 01133567888888888886
Q ss_pred cceecCCCceecCCCceEEEEcCCCCccccccCCCCCCCCCCCCCCCCeeEEEe
Q 036143 274 LKSVCSDNAVLICNSLQEIQITPSCPKLKRLSLRLPPLDNGQPSPSPALEVIKI 327 (355)
Q Consensus 274 l~~i~~~~~~l~~~~L~~L~i~~~c~~L~~lp~~~~~l~~~~~~~~~~L~~l~~ 327 (355)
+...........+++|++|++. +|. +... ++..+. ..+|.+....+
T Consensus 500 l~~~~~~~~~~~l~~L~~L~ls-~n~-it~~--~~~~l~----~~~p~l~~~~~ 545 (592)
T 3ogk_B 500 FSERAIAAAVTKLPSLRYLWVQ-GYR-ASMT--GQDLMQ----MARPYWNIELI 545 (592)
T ss_dssp CBHHHHHHHHHHCSSCCEEEEE-SCB-CCTT--CTTGGG----GCCTTEEEEEE
T ss_pred CcHHHHHHHHHhcCccCeeECc-CCc-CCHH--HHHHHH----HhCCCcEEEEe
Confidence 3321110012236788888888 886 4332 333332 34556666544
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.36 E-value=2.3e-12 Score=125.39 Aligned_cols=105 Identities=16% Similarity=0.171 Sum_probs=86.8
Q ss_pred CCCCCccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhh
Q 036143 2 LERVPSLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAA 81 (355)
Q Consensus 2 l~~lP~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l 81 (355)
++.+|.++.+++|++|+|++|.+..+|. ++.+.+|++|++++|.+..+| .+ +.+++|++|++++|.. ..++ .+
T Consensus 55 i~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l-~~l~~L~~L~Ls~N~l---~~l~-~l 127 (605)
T 1m9s_A 55 IKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SL-KDLKKLKSLSLEHNGI---SDIN-GL 127 (605)
T ss_dssp CCCCTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TS-TTCTTCCEEECTTSCC---CCCG-GG
T ss_pred CCCChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hh-ccCCCCCEEEecCCCC---CCCc-cc
Confidence 5667889999999999999999998876 999999999999999999887 56 9999999999999765 3356 79
Q ss_pred cccccccceEEEeccCccccccccccccccccc
Q 036143 82 RSSDRLDTFVGYFSKLDDFNTYVKSSDGQRSKH 114 (355)
Q Consensus 82 ~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 114 (355)
..|++|+.|++..+..... ..+..+..|+.|.
T Consensus 128 ~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~ 159 (605)
T 1m9s_A 128 VHLPQLESLYLGNNKITDI-TVLSRLTKLDTLS 159 (605)
T ss_dssp GGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEE
T ss_pred cCCCccCEEECCCCccCCc-hhhcccCCCCEEE
Confidence 9999999999987766554 3444555555444
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.35 E-value=5.1e-12 Score=109.55 Aligned_cols=109 Identities=18% Similarity=0.209 Sum_probs=85.5
Q ss_pred CCCCC-ccccccccceecCCCccccccCc-ccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhH
Q 036143 2 LERVP-SLAKLLALQCLDLEYTAIKEVPE-GMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQE 79 (355)
Q Consensus 2 l~~lP-~i~~l~~L~~L~L~~~~~~~lP~-~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~ 79 (355)
++.+| .+. .++++|++++|.+..++. .++++.+|++|++++|.+..++.+.++.+++|++|+++++.. ......
T Consensus 26 l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~- 101 (251)
T 3m19_A 26 LDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPLG- 101 (251)
T ss_dssp CSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC-CCCCTT-
T ss_pred ccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcc-cccChh-
Confidence 67788 665 689999999999997754 689999999999999999998887669999999999998654 333333
Q ss_pred hhcccccccceEEEeccCcccccc-ccccccccccc
Q 036143 80 AARSSDRLDTFVGYFSKLDDFNTY-VKSSDGQRSKH 114 (355)
Q Consensus 80 ~l~~L~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~ 114 (355)
.++.+++|++|++..+.+...... +..+..|+.|.
T Consensus 102 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 137 (251)
T 3m19_A 102 VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELR 137 (251)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred HhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEE
Confidence 678999999999987777655433 34455555444
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.34 E-value=2e-12 Score=107.80 Aligned_cols=77 Identities=10% Similarity=0.045 Sum_probs=45.8
Q ss_pred ccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccccccceEEEeccCcc-ccccccccccc
Q 036143 32 EMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLDTFVGYFSKLDD-FNTYVKSSDGQ 110 (355)
Q Consensus 32 ~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~-~~~~~~~l~~L 110 (355)
+.+.+|++|++++|.+..+| ++ ..+++|++|++++|.. ..++ .+..+++|++|++..+.... .+..++.++.|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l-~~l~~L~~L~l~~n~~---~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GI-EYAHNIKDLTINNIHA---TNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSL 114 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TG-GGCTTCSEEEEESCCC---SCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred hhcCCccEEeccCCCccChH-HH-hcCCCCCEEEccCCCC---Ccch-hhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence 56666777777777666666 45 6777777777766532 3344 56667777777776655543 22334444444
Q ss_pred cccc
Q 036143 111 RSKH 114 (355)
Q Consensus 111 ~~L~ 114 (355)
+.|.
T Consensus 115 ~~L~ 118 (197)
T 4ezg_A 115 TLLD 118 (197)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 4444
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=5.4e-12 Score=112.94 Aligned_cols=228 Identities=16% Similarity=0.106 Sum_probs=141.6
Q ss_pred ccceecCCCcccc--ccCc--ccccCcccceecccCcccccc-cchhh-hcCCCcceeeecccCCccccc-hh-Hhhccc
Q 036143 13 ALQCLDLEYTAIK--EVPE--GMEMLENLVHLTIYSKMLIKF-PAGIL-PKLCNLYSLRLNWGSETSRET-VQ-EAARSS 84 (355)
Q Consensus 13 ~L~~L~L~~~~~~--~lP~--~i~~L~~L~~L~l~~~~~~~l-P~~i~-~~L~~L~~L~l~~~~~~~~~~-~~-~~l~~L 84 (355)
.++.+.+.++.+. .+.. ....+.+|++|++++|.+... |..++ +++++|++|+++++....... .+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 4566777776553 1211 123456799999999987754 44433 789999999999875432111 11 256789
Q ss_pred ccccceEEEeccCcccc-ccccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCccCCCccccCc
Q 036143 85 DRLDTFVGYFSKLDDFN-TYVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICEREGVTIVLP 163 (355)
Q Consensus 85 ~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~~~~~~~~~ 163 (355)
++|++|++..+...... ..++.++.|+.|. +++ +.+.+..
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~------------Ls~--------------------N~l~~~~------- 185 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLD------------LSD--------------------NPGLGER------- 185 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEE------------CCS--------------------CTTCHHH-------
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEE------------CCC--------------------CCCccch-------
Confidence 99999999888775544 3455555555555 222 2111100
Q ss_pred hhHHHHHhhcccccccccccccccccccccccCCCccEEeeccCCCccccchH--HHHhhcCCCCeEEEecCCCCceecc
Q 036143 164 KDVQGLIMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSL--QLLAALQNLEFLVVQSCNRNEEIVE 241 (355)
Q Consensus 164 ~~L~~Ll~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~l~~L~~L~~L~l~~~~~l~~i~~ 241 (355)
.++... ..+.+++|++|++++| +++.+... ..+..+++|++|+++++.-....+.
T Consensus 186 ---------------~~~~~~-------~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~ 242 (310)
T 4glp_A 186 ---------------GLMAAL-------CPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNP 242 (310)
T ss_dssp ---------------HHHTTS-------CTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCS
T ss_pred ---------------hhhHHH-------hhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCCCCccchh
Confidence 000000 0036788999999998 56543332 1246789999999997654333232
Q ss_pred cCcchhhhhccccccccc---CcccceeecccccccceecCCCceecCCCceEEEEcCCCCccccccCCCCCCCCCCCCC
Q 036143 242 VNDEETQKELGISAITIT---LPRLKKLWLSFLPELKSVCSDNAVLICNSLQEIQITPSCPKLKRLSLRLPPLDNGQPSP 318 (355)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~l~~i~~~~~~l~~~~L~~L~i~~~c~~L~~lp~~~~~l~~~~~~~ 318 (355)
.+.. +++|++|+++++ .++.++. .. +++|++|++. + .++..+|. ...
T Consensus 243 --------------~~~~~~~~~~L~~L~Ls~N-~l~~lp~--~~--~~~L~~L~Ls-~-N~l~~~~~-~~~-------- 292 (310)
T 4glp_A 243 --------------SAPRCMWSSALNSLNLSFA-GLEQVPK--GL--PAKLRVLDLS-S-NRLNRAPQ-PDE-------- 292 (310)
T ss_dssp --------------CCSSCCCCTTCCCEECCSS-CCCSCCS--CC--CSCCSCEECC-S-CCCCSCCC-TTS--------
T ss_pred --------------hHHhccCcCcCCEEECCCC-CCCchhh--hh--cCCCCEEECC-C-CcCCCCch-hhh--------
Confidence 2334 379999999987 4666655 23 3699999996 4 46777764 333
Q ss_pred CCCeeEEEehhhhh
Q 036143 319 SPALEVIKIRKELW 332 (355)
Q Consensus 319 ~~~L~~l~~~~~~~ 332 (355)
+++|+.+++..+.+
T Consensus 293 l~~L~~L~L~~N~l 306 (310)
T 4glp_A 293 LPEVDNLTLDGNPF 306 (310)
T ss_dssp CCCCSCEECSSTTT
T ss_pred CCCccEEECcCCCC
Confidence 45999999865543
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.33 E-value=1.8e-14 Score=136.11 Aligned_cols=88 Identities=18% Similarity=0.153 Sum_probs=50.8
Q ss_pred ccccccccceecCCCccccc-cCccc-ccCc----ccceecccCcccc-----cccchhhhcCCCcceeeecccCCcccc
Q 036143 7 SLAKLLALQCLDLEYTAIKE-VPEGM-EMLE----NLVHLTIYSKMLI-----KFPAGILPKLCNLYSLRLNWGSETSRE 75 (355)
Q Consensus 7 ~i~~l~~L~~L~L~~~~~~~-lP~~i-~~L~----~L~~L~l~~~~~~-----~lP~~i~~~L~~L~~L~l~~~~~~~~~ 75 (355)
.+..+++|++|++++|.+.. .+..+ ..+. +|++|++++|.+. .+|..+ .++++|++|+++++.. ...
T Consensus 51 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l-~~~~~L~~L~Ls~n~i-~~~ 128 (461)
T 1z7x_W 51 ALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTL-RTLPTLQELHLSDNLL-GDA 128 (461)
T ss_dssp HHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHT-TSCTTCCEEECCSSBC-HHH
T ss_pred HHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHH-ccCCceeEEECCCCcC-chH
Confidence 45566778888887776653 23333 2344 5777777777666 345555 7777777777776542 222
Q ss_pred chhHhhc-----ccccccceEEEeccC
Q 036143 76 TVQEAAR-----SSDRLDTFVGYFSKL 97 (355)
Q Consensus 76 ~~~~~l~-----~L~~L~~L~l~~~~~ 97 (355)
.+. .+. ..++|++|++..+..
T Consensus 129 ~~~-~l~~~l~~~~~~L~~L~L~~n~l 154 (461)
T 1z7x_W 129 GLQ-LLCEGLLDPQCRLEKLQLEYCSL 154 (461)
T ss_dssp HHH-HHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHH-HHHHHHhcCCCcceEEECCCCCC
Confidence 222 222 244566666655544
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.33 E-value=8.7e-14 Score=135.60 Aligned_cols=81 Identities=16% Similarity=0.124 Sum_probs=56.2
Q ss_pred ccccccceecCCCccccc-----cCcccccCcccceecccCccccc-----ccchhhhcCCCcceeeecccCCccccchh
Q 036143 9 AKLLALQCLDLEYTAIKE-----VPEGMEMLENLVHLTIYSKMLIK-----FPAGILPKLCNLYSLRLNWGSETSRETVQ 78 (355)
Q Consensus 9 ~~l~~L~~L~L~~~~~~~-----lP~~i~~L~~L~~L~l~~~~~~~-----lP~~i~~~L~~L~~L~l~~~~~~~~~~~~ 78 (355)
..+++|++|++++|.+.. ++..+..+++|++|++++|.+.. ++.-+ .++++|++|++.+|.. ..++
T Consensus 161 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~-~~~~~L~~L~L~~~~~---~~l~ 236 (592)
T 3ogk_B 161 THCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIA-RNCRSLVSVKVGDFEI---LELV 236 (592)
T ss_dssp HHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHH-HHCTTCCEEECSSCBG---GGGH
T ss_pred hhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHH-hhCCCCcEEeccCccH---HHHH
Confidence 367889999999887642 33344677888888888887652 33333 7788888888887543 2233
Q ss_pred HhhcccccccceEEE
Q 036143 79 EAARSSDRLDTFVGY 93 (355)
Q Consensus 79 ~~l~~L~~L~~L~l~ 93 (355)
..++.+++|++|.+.
T Consensus 237 ~~~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 237 GFFKAAANLEEFCGG 251 (592)
T ss_dssp HHHHHCTTCCEEEEC
T ss_pred HHHhhhhHHHhhccc
Confidence 477778888888875
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.33 E-value=4.3e-13 Score=123.87 Aligned_cols=250 Identities=12% Similarity=0.028 Sum_probs=157.1
Q ss_pred cccceecCCCccccccCcccccCcccceecccCcccccc-----cchhhhcCCCcceeeecccCC--ccccchh------
Q 036143 12 LALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKF-----PAGILPKLCNLYSLRLNWGSE--TSRETVQ------ 78 (355)
Q Consensus 12 ~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~l-----P~~i~~~L~~L~~L~l~~~~~--~~~~~~~------ 78 (355)
..|++..+....+..++..+..+++|++|++++|.+... +..+ .++++|++|++++|.. ..+..+.
T Consensus 9 ~~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l-~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~ 87 (386)
T 2ca6_A 9 KSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENI-ASKKDLEIAEFSDIFTGRVKDEIPEALRLLL 87 (386)
T ss_dssp CCCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTT-TTCTTCCEEECCSCCTTSCGGGSHHHHHHHH
T ss_pred cccccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHH-HhCCCccEEeCcccccCccccchhHHHHHHH
Confidence 345566666667778999999999999999999987753 3334 7899999999998632 1222122
Q ss_pred HhhcccccccceEEEeccCcc-----ccccccccccccccccccccceeEeecCCCccc----cceec----cc------
Q 036143 79 EAARSSDRLDTFVGYFSKLDD-----FNTYVKSSDGQRSKHFHFQVSTVYNGSAANTRF----YSFLR----TR------ 139 (355)
Q Consensus 79 ~~l~~L~~L~~L~l~~~~~~~-----~~~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~----~~~l~----~~------ 139 (355)
..+..+++|++|+++.+.+.. ++..+..++.|+.|. ++++.. +..+. ..
T Consensus 88 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~------------L~~n~l~~~~~~~l~~~l~~l~~~~~~ 155 (386)
T 2ca6_A 88 QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY------------LHNNGLGPQAGAKIARALQELAVNKKA 155 (386)
T ss_dssp HHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEE------------CCSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEE------------CcCCCCCHHHHHHHHHHHHHHhhhhhc
Confidence 134789999999998877655 334566677777776 333321 11111 11
Q ss_pred ---CCccEEEEeccCCccCCCccccCchhHHHHHhhcccccccccccccccccccccccCCCccEEeeccCCCccccc--
Q 036143 140 ---EANKSVCFYGCKICEREGVTIVLPKDVQGLIMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLF-- 214 (355)
Q Consensus 140 ---~~~~~~~L~~l~~~~~~~~~~~~~~~L~~Ll~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~-- 214 (355)
..++.+.+.++.+... .+..+ .. ....+++|++|++++| +++...
T Consensus 156 ~~~~~L~~L~L~~n~l~~~---------~~~~l-----------~~---------~l~~~~~L~~L~L~~n-~l~~~g~~ 205 (386)
T 2ca6_A 156 KNAPPLRSIICGRNRLENG---------SMKEW-----------AK---------TFQSHRLLHTVKMVQN-GIRPEGIE 205 (386)
T ss_dssp HTCCCCCEEECCSSCCTGG---------GHHHH-----------HH---------HHHHCTTCCEEECCSS-CCCHHHHH
T ss_pred ccCCCCcEEECCCCCCCcH---------HHHHH-----------HH---------HHHhCCCcCEEECcCC-CCCHhHHH
Confidence 3444555555544321 01111 00 0034678999999999 555321
Q ss_pred -hHH-HHhhcCCCCeEEEecCCCC----ceecccCcchhhhhcccccccccCcccceeeccccccccee-----cCCCce
Q 036143 215 -SLQ-LLAALQNLEFLVVQSCNRN----EEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPELKSV-----CSDNAV 283 (355)
Q Consensus 215 -~~~-~l~~L~~L~~L~l~~~~~l----~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i-----~~~~~~ 283 (355)
... .+..+++|+.|+++++... ..++. .+..+++|++|++++|. +... .. ..
T Consensus 206 ~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~--------------~l~~~~~L~~L~L~~n~-i~~~~~~~l~~--~l 268 (386)
T 2ca6_A 206 HLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI--------------ALKSWPNLRELGLNDCL-LSARGAAAVVD--AF 268 (386)
T ss_dssp HHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH--------------HGGGCTTCCEEECTTCC-CCHHHHHHHHH--HH
T ss_pred HHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH--------------HHccCCCcCEEECCCCC-CchhhHHHHHH--HH
Confidence 112 3568999999999987632 33332 56788999999999985 3322 11 11
Q ss_pred --ecCCCceEEEEcCCCCcccc-----ccCCC-CCCCCCCCCCCCCeeEEEehhhh
Q 036143 284 --LICNSLQEIQITPSCPKLKR-----LSLRL-PPLDNGQPSPSPALEVIKIRKEL 331 (355)
Q Consensus 284 --l~~~~L~~L~i~~~c~~L~~-----lp~~~-~~l~~~~~~~~~~L~~l~~~~~~ 331 (355)
..+++|++|++. +|. +.. +|..+ .+++ +|+.|++..+.
T Consensus 269 ~~~~~~~L~~L~L~-~n~-i~~~g~~~l~~~l~~~l~--------~L~~L~l~~N~ 314 (386)
T 2ca6_A 269 SKLENIGLQTLRLQ-YNE-IELDAVRTLKTVIDEKMP--------DLLFLELNGNR 314 (386)
T ss_dssp HTCSSCCCCEEECC-SSC-CBHHHHHHHHHHHHHHCT--------TCCEEECTTSB
T ss_pred hhccCCCeEEEECc-CCc-CCHHHHHHHHHHHHhcCC--------CceEEEccCCc
Confidence 125799999997 764 444 77665 3333 89999985443
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.31 E-value=3.6e-12 Score=111.31 Aligned_cols=83 Identities=12% Similarity=0.168 Sum_probs=59.3
Q ss_pred cccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccccccc
Q 036143 10 KLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLDT 89 (355)
Q Consensus 10 ~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~ 89 (355)
++.++..++++++.++.++ .+..+.+|++|++++|.+..+| ++ +.+++|++|+++++.. ..++ .++.+++|++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l-~~l~~L~~L~L~~N~i---~~~~-~l~~l~~L~~ 89 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GM-QFFTNLKELHLSHNQI---SDLS-PLKDLTKLEE 89 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TG-GGCTTCCEEECCSSCC---CCCG-GGTTCSSCCE
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HH-hhCCCCCEEECCCCcc---CCCh-hhccCCCCCE
Confidence 4666777777777777776 5777788888888888777777 55 7888888888877644 3344 3777788888
Q ss_pred eEEEeccCcc
Q 036143 90 FVGYFSKLDD 99 (355)
Q Consensus 90 L~l~~~~~~~ 99 (355)
|++..+....
T Consensus 90 L~L~~N~l~~ 99 (263)
T 1xeu_A 90 LSVNRNRLKN 99 (263)
T ss_dssp EECCSSCCSC
T ss_pred EECCCCccCC
Confidence 8876665544
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.1e-12 Score=118.23 Aligned_cols=91 Identities=12% Similarity=0.088 Sum_probs=60.1
Q ss_pred cccccccceecCCCccccccC-----cccccCc-ccceecccCcccccccchhhhcC-----CCcceeeecccCCccccc
Q 036143 8 LAKLLALQCLDLEYTAIKEVP-----EGMEMLE-NLVHLTIYSKMLIKFPAGILPKL-----CNLYSLRLNWGSETSRET 76 (355)
Q Consensus 8 i~~l~~L~~L~L~~~~~~~lP-----~~i~~L~-~L~~L~l~~~~~~~lP~~i~~~L-----~~L~~L~l~~~~~~~~~~ 76 (355)
+...++|++|++++|.++..+ ..+..++ +|++|++++|.+.......+..+ ++|++|++++|.. ....
T Consensus 18 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l-~~~~ 96 (362)
T 3goz_A 18 TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFL-SYKS 96 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG-GGSC
T ss_pred HhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcC-ChHH
Confidence 344556888888888887765 4567777 78888888887776644332554 8888888887653 2222
Q ss_pred hh---Hhhccc-ccccceEEEeccCcc
Q 036143 77 VQ---EAARSS-DRLDTFVGYFSKLDD 99 (355)
Q Consensus 77 ~~---~~l~~L-~~L~~L~l~~~~~~~ 99 (355)
.. ..+..+ ++|++|++..+....
T Consensus 97 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 123 (362)
T 3goz_A 97 SDELVKTLAAIPFTITVLDLGWNDFSS 123 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred HHHHHHHHHhCCCCccEEECcCCcCCc
Confidence 22 123334 788888887666544
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.8e-11 Score=103.39 Aligned_cols=109 Identities=20% Similarity=0.184 Sum_probs=91.0
Q ss_pred CCCCC-ccccccccceecCCCcccccc-CcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhH
Q 036143 2 LERVP-SLAKLLALQCLDLEYTAIKEV-PEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQE 79 (355)
Q Consensus 2 l~~lP-~i~~l~~L~~L~L~~~~~~~l-P~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~ 79 (355)
++.+| .+. .+|++|++++|.+..+ |..++.+.+|++|++++|.+..+|.+.++.+++|++|+++++.. ......
T Consensus 31 l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l-~~l~~~- 106 (229)
T 3e6j_A 31 HASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL-TVLPSA- 106 (229)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTT-
T ss_pred cCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcC-CccChh-
Confidence 56788 554 8999999999999977 67789999999999999999999988769999999999998754 333222
Q ss_pred hhcccccccceEEEeccCccccccccccccccccc
Q 036143 80 AARSSDRLDTFVGYFSKLDDFNTYVKSSDGQRSKH 114 (355)
Q Consensus 80 ~l~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 114 (355)
.+..+++|++|++..+.+..++..+..+..|+.|.
T Consensus 107 ~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~ 141 (229)
T 3e6j_A 107 VFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLA 141 (229)
T ss_dssp TTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEE
T ss_pred HhCcchhhCeEeccCCcccccCcccccCCCCCEEE
Confidence 57899999999999888887777778888888877
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.22 E-value=1.3e-12 Score=123.33 Aligned_cols=114 Identities=20% Similarity=0.258 Sum_probs=66.6
Q ss_pred CCCccEEeeccCCCccccc---hHHHHhhcCCCCeEEEecCCCCceecccCcchhhhhcccccccccCcccceeeccccc
Q 036143 196 FSHLKALWFSYCPNLQKLF---SLQLLAALQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLP 272 (355)
Q Consensus 196 ~~~L~~L~l~~~~~l~~~~---~~~~l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 272 (355)
.++|++|++++| .++... ....+..+++|++|+++++. +...... .. .......+++|++|++++|
T Consensus 198 ~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~---~l-----~~~~~~~~~~L~~L~L~~n- 266 (461)
T 1z7x_W 198 PCQLEALKLESC-GVTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMA---EL-----CPGLLHPSSRLRTLWIWEC- 266 (461)
T ss_dssp CCCCCEEECTTS-CCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHH---HH-----HHHHTSTTCCCCEEECTTS-
T ss_pred CCCceEEEccCC-CCcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHH---HH-----HHHHhcCCCCceEEECcCC-
Confidence 568999999999 455422 12335678999999999774 2221000 00 0001225789999999988
Q ss_pred ccce-----ecCCCceecCCCceEEEEcCCCCcccc-----ccCCCCCCCCCCCCCCCCeeEEEehhhh
Q 036143 273 ELKS-----VCSDNAVLICNSLQEIQITPSCPKLKR-----LSLRLPPLDNGQPSPSPALEVIKIRKEL 331 (355)
Q Consensus 273 ~l~~-----i~~~~~~l~~~~L~~L~i~~~c~~L~~-----lp~~~~~l~~~~~~~~~~L~~l~~~~~~ 331 (355)
.+.. +.. ....+++|++|++. +|. +.. ++..+. ...++|+.+++..+.
T Consensus 267 ~l~~~~~~~l~~--~l~~~~~L~~L~Ls-~n~-i~~~~~~~l~~~l~-------~~~~~L~~L~L~~n~ 324 (461)
T 1z7x_W 267 GITAKGCGDLCR--VLRAKESLKELSLA-GNE-LGDEGARLLCETLL-------EPGCQLESLWVKSCS 324 (461)
T ss_dssp CCCHHHHHHHHH--HHHHCTTCCEEECT-TCC-CHHHHHHHHHHHHT-------STTCCCCEEECTTSC
T ss_pred CCCHHHHHHHHH--HHhhCCCcceEECC-CCC-CchHHHHHHHHHhc-------cCCccceeeEcCCCC
Confidence 4444 222 11126799999998 763 432 222221 123489999995443
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.21 E-value=1.7e-11 Score=104.11 Aligned_cols=109 Identities=15% Similarity=0.158 Sum_probs=81.4
Q ss_pred CCCCC-ccccccccceecCCCccccccCc-ccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhH
Q 036143 2 LERVP-SLAKLLALQCLDLEYTAIKEVPE-GMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQE 79 (355)
Q Consensus 2 l~~lP-~i~~l~~L~~L~L~~~~~~~lP~-~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~ 79 (355)
++.+| .+. .+|++|++++|.++.+|. .+..+.+|++|++++|.+..++.+.|+++++|++|+++++.. ......
T Consensus 23 l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~- 98 (220)
T 2v9t_B 23 LTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI-TELPKS- 98 (220)
T ss_dssp CSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC-CCCCTT-
T ss_pred cCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC-CccCHh-
Confidence 56777 554 688999999998887765 578889999999999988887443338899999999988654 222222
Q ss_pred hhcccccccceEEEeccCcccc-ccccccccccccc
Q 036143 80 AARSSDRLDTFVGYFSKLDDFN-TYVKSSDGQRSKH 114 (355)
Q Consensus 80 ~l~~L~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~ 114 (355)
.+..+++|++|++..+.+.... ..+..+..|+.|.
T Consensus 99 ~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 134 (220)
T 2v9t_B 99 LFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLS 134 (220)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred HccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEE
Confidence 4678889999998877776654 4466777777777
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.21 E-value=3e-13 Score=131.77 Aligned_cols=86 Identities=13% Similarity=0.090 Sum_probs=50.0
Q ss_pred cccccceecCCCc-cccc--cCcccccCcccceecccCcccccccch-h---hhcCCCcceeeecccC-CccccchhHhh
Q 036143 10 KLLALQCLDLEYT-AIKE--VPEGMEMLENLVHLTIYSKMLIKFPAG-I---LPKLCNLYSLRLNWGS-ETSRETVQEAA 81 (355)
Q Consensus 10 ~l~~L~~L~L~~~-~~~~--lP~~i~~L~~L~~L~l~~~~~~~lP~~-i---~~~L~~L~~L~l~~~~-~~~~~~~~~~l 81 (355)
.+++|++|++++| .++. ++..+..+++|++|++++|.+...... + ...+++|++|+++++. ......+..-+
T Consensus 128 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~ 207 (594)
T 2p1m_B 128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLV 207 (594)
T ss_dssp HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHH
T ss_pred hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHH
Confidence 4677888888877 5553 555455777888888887765432211 1 1355677777777654 11122233123
Q ss_pred cccccccceEEEec
Q 036143 82 RSSDRLDTFVGYFS 95 (355)
Q Consensus 82 ~~L~~L~~L~l~~~ 95 (355)
..+++|++|++..+
T Consensus 208 ~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 208 TRCPNLKSLKLNRA 221 (594)
T ss_dssp HHCTTCCEEECCTT
T ss_pred HhCCCCcEEecCCC
Confidence 44577777777544
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.20 E-value=3.7e-11 Score=100.12 Aligned_cols=103 Identities=20% Similarity=0.218 Sum_probs=67.0
Q ss_pred ccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhccccc
Q 036143 7 SLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDR 86 (355)
Q Consensus 7 ~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 86 (355)
+..++.+|++|++++|.+..+| .+..+.+|++|++++|.+..++ .+ +.+++|++|+++++.. ....+. .++.+++
T Consensus 39 ~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l-~~l~~L~~L~l~~n~l-~~~~~~-~l~~l~~ 113 (197)
T 4ezg_A 39 TEAQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PI-SGLSNLERLRIMGKDV-TSDKIP-NLSGLTS 113 (197)
T ss_dssp BHHHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GG-TTCTTCCEEEEECTTC-BGGGSC-CCTTCTT
T ss_pred ChhhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hh-hcCCCCCEEEeECCcc-CcccCh-hhcCCCC
Confidence 4456677777777777777777 6777777777777777665554 44 7777777777776543 222334 6677777
Q ss_pred ccceEEEeccCcc-ccccccccccccccc
Q 036143 87 LDTFVGYFSKLDD-FNTYVKSSDGQRSKH 114 (355)
Q Consensus 87 L~~L~l~~~~~~~-~~~~~~~l~~L~~L~ 114 (355)
|++|++..+.... .+..++.++.|+.|.
T Consensus 114 L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~ 142 (197)
T 4ezg_A 114 LTLLDISHSAHDDSILTKINTLPKVNSID 142 (197)
T ss_dssp CCEEECCSSBCBGGGHHHHTTCSSCCEEE
T ss_pred CCEEEecCCccCcHhHHHHhhCCCCCEEE
Confidence 7777776666554 234455666666665
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.20 E-value=1.9e-11 Score=99.08 Aligned_cols=100 Identities=21% Similarity=0.152 Sum_probs=62.8
Q ss_pred ccccceecCCCcccc--ccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhccccccc
Q 036143 11 LLALQCLDLEYTAIK--EVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLD 88 (355)
Q Consensus 11 l~~L~~L~L~~~~~~--~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 88 (355)
..+|++|++++|.+. .+|..++.+++|++|++++|.+..+ ..+ +.+++|++|++++|.... . ++..++.+++|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~-~~l~~L~~L~Ls~N~l~~-~-~~~~~~~l~~L~ 98 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNL-PKLPKLKKLELSENRIFG-G-LDMLAEKLPNLT 98 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSC-CCCSSCCEEEEESCCCCS-C-CCHHHHHCTTCC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhh-ccCCCCCEEECcCCcCch-H-HHHHHhhCCCCC
Confidence 456777777777666 6676667777777777777766666 444 677777777777654321 1 332455577777
Q ss_pred ceEEEeccCcccc--ccccccccccccc
Q 036143 89 TFVGYFSKLDDFN--TYVKSSDGQRSKH 114 (355)
Q Consensus 89 ~L~l~~~~~~~~~--~~~~~l~~L~~L~ 114 (355)
+|++..+.+.... ..+..++.|+.|.
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~ 126 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLD 126 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEE
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEE
Confidence 7777666665543 4455555565555
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.20 E-value=2.1e-11 Score=99.66 Aligned_cols=104 Identities=14% Similarity=0.088 Sum_probs=55.5
Q ss_pred CccccccccceecCCCccccccCcccccCc-ccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhccc
Q 036143 6 PSLAKLLALQCLDLEYTAIKEVPEGMEMLE-NLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSS 84 (355)
Q Consensus 6 P~i~~l~~L~~L~L~~~~~~~lP~~i~~L~-~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L 84 (355)
|.+.++.+|++|++++|.++.+|. +..+. +|++|++++|.+..+ ..+ +.+++|++|+++++... .. .+..++.+
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l-~~l~~L~~L~Ls~N~l~-~~-~~~~~~~l 87 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGF-PLLRRLKTLLVNNNRIC-RI-GEGLDQAL 87 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCC-CCCSSCCEEECCSSCCC-EE-CSCHHHHC
T ss_pred HhcCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-ccc-ccCCCCCEEECCCCccc-cc-CcchhhcC
Confidence 344556666666666666665543 44433 666666666666655 334 66666666666654331 11 11023566
Q ss_pred ccccceEEEeccCccccc--cccccccccccc
Q 036143 85 DRLDTFVGYFSKLDDFNT--YVKSSDGQRSKH 114 (355)
Q Consensus 85 ~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~ 114 (355)
++|++|++..+.+..++. .++.++.|+.|.
T Consensus 88 ~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 88 PDLTELILTNNSLVELGDLDPLASLKSLTYLC 119 (176)
T ss_dssp TTCCEEECCSCCCCCGGGGGGGGGCTTCCEEE
T ss_pred CCCCEEECCCCcCCcchhhHhhhcCCCCCEEE
Confidence 666666666555544433 344445555444
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.19 E-value=1.1e-11 Score=98.36 Aligned_cols=100 Identities=19% Similarity=0.169 Sum_probs=49.5
Q ss_pred ccccceecCCCcccc--ccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhccccccc
Q 036143 11 LLALQCLDLEYTAIK--EVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLD 88 (355)
Q Consensus 11 l~~L~~L~L~~~~~~--~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 88 (355)
..+|++|++++|.+. .+|..++.+.+|++|++++|.+..+ ..+ +.+++|++|++++|... .. ++..++.+++|+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~-~~l~~L~~L~Ls~n~i~-~~-~~~~~~~l~~L~ 91 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANL-PKLNKLKKLELSDNRVS-GG-LEVLAEKCPNLT 91 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTC-CCCTTCCEEECCSSCCC-SC-THHHHHHCTTCC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhh-hcCCCCCEEECCCCccc-ch-HHHHhhhCCCCC
Confidence 345555555555554 5555555555555555555555555 333 55555555555554321 11 232344455555
Q ss_pred ceEEEeccCcccc--ccccccccccccc
Q 036143 89 TFVGYFSKLDDFN--TYVKSSDGQRSKH 114 (355)
Q Consensus 89 ~L~l~~~~~~~~~--~~~~~l~~L~~L~ 114 (355)
+|++..+...+.. ..++.++.|+.|.
T Consensus 92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~ 119 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLKKLENLKSLD 119 (149)
T ss_dssp EEECTTSCCCSHHHHGGGGGCTTCCEEE
T ss_pred EEECCCCcCCChHHHHHHhhCCCCCEEe
Confidence 5555544444422 3344444444444
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.7e-11 Score=108.34 Aligned_cols=203 Identities=14% Similarity=-0.013 Sum_probs=129.4
Q ss_pred cccccceecCCCcccc-ccCccc--ccCcccceecccCcccccc-c----chhhhcCCCcceeeecccCCccccchhHhh
Q 036143 10 KLLALQCLDLEYTAIK-EVPEGM--EMLENLVHLTIYSKMLIKF-P----AGILPKLCNLYSLRLNWGSETSRETVQEAA 81 (355)
Q Consensus 10 ~l~~L~~L~L~~~~~~-~lP~~i--~~L~~L~~L~l~~~~~~~l-P----~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l 81 (355)
.+.+|++|++++|.+. ..|..+ +.+.+|++|++++|.+... | ..+ ..+++|++|+++++.. ...... .+
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~-~~~~~L~~L~Ls~n~l-~~~~~~-~~ 165 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ-WLKPGLKVLSIAQAHS-PAFSCE-QV 165 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT-TBCSCCCEEEEECCSS-CCCCTT-SC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh-hhccCCCEEEeeCCCc-chhhHH-Hh
Confidence 3567999999999887 567777 8999999999999988753 2 233 6799999999998754 333334 78
Q ss_pred cccccccceEEEeccCcc---cc--ccccccccccccccccccceeEeecCCCccc-cce-ecccCCccEEEEeccCCcc
Q 036143 82 RSSDRLDTFVGYFSKLDD---FN--TYVKSSDGQRSKHFHFQVSTVYNGSAANTRF-YSF-LRTREANKSVCFYGCKICE 154 (355)
Q Consensus 82 ~~L~~L~~L~l~~~~~~~---~~--~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~-~~~-l~~~~~~~~~~L~~l~~~~ 154 (355)
+.+++|++|+++.+.... .. ..++.++.|+.|. +....+..... ... +.....++.++++++.+.+
T Consensus 166 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~-------Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~ 238 (310)
T 4glp_A 166 RAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLA-------LRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRA 238 (310)
T ss_dssp CCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCB-------CCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCC
T ss_pred ccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEE-------CCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCc
Confidence 899999999998776543 21 2235677788887 22222321111 001 1223456666776666554
Q ss_pred CCCccccCchhHHHHHhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCC
Q 036143 155 REGVTIVLPKDVQGLIMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCN 234 (355)
Q Consensus 155 ~~~~~~~~~~~L~~Ll~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~ 234 (355)
..+.. +. ....+++|++|+++++ +++.+.. . + .++|+.|+++++.
T Consensus 239 ~~p~~-----------------------~~-------~~~~~~~L~~L~Ls~N-~l~~lp~-~-~--~~~L~~L~Ls~N~ 283 (310)
T 4glp_A 239 TVNPS-----------------------AP-------RCMWSSALNSLNLSFA-GLEQVPK-G-L--PAKLRVLDLSSNR 283 (310)
T ss_dssp CCCSC-----------------------CS-------SCCCCTTCCCEECCSS-CCCSCCS-C-C--CSCCSCEECCSCC
T ss_pred cchhh-----------------------HH-------hccCcCcCCEEECCCC-CCCchhh-h-h--cCCCCEEECCCCc
Confidence 21110 00 0023468888898888 4554322 1 2 3788999998654
Q ss_pred CCceecccCcchhhhhcccccccccCcccceeecccccc
Q 036143 235 RNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPE 273 (355)
Q Consensus 235 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 273 (355)
+..++. ...+++|++|++++++-
T Consensus 284 -l~~~~~---------------~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 284 -LNRAPQ---------------PDELPEVDNLTLDGNPF 306 (310)
T ss_dssp -CCSCCC---------------TTSCCCCSCEECSSTTT
T ss_pred -CCCCch---------------hhhCCCccEEECcCCCC
Confidence 334322 12678999999988753
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=5.4e-11 Score=98.81 Aligned_cols=109 Identities=10% Similarity=0.096 Sum_probs=78.8
Q ss_pred CCCCC-ccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHh
Q 036143 2 LERVP-SLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEA 80 (355)
Q Consensus 2 l~~lP-~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~ 80 (355)
++.+| .+. .+|++|++++|.++.+|..++.+.+|++|++++|.+..++.+.|+.+++|++|+++++.. ...... .
T Consensus 22 l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l-~~i~~~-~ 97 (193)
T 2wfh_A 22 LKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL-RCIPPR-T 97 (193)
T ss_dssp CSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CBCCTT-T
T ss_pred CCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc-CEeCHH-H
Confidence 56677 553 578888888888888888888888888888888888888766558888888888887643 333333 6
Q ss_pred hcccccccceEEEeccCcccccc-ccccccccccc
Q 036143 81 ARSSDRLDTFVGYFSKLDDFNTY-VKSSDGQRSKH 114 (355)
Q Consensus 81 l~~L~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~ 114 (355)
++.+++|++|++..+.+...+.. +..+..|+.|.
T Consensus 98 f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (193)
T 2wfh_A 98 FDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLA 132 (193)
T ss_dssp TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred hCCCCCCCEEECCCCCCCeeChhhhhcCccccEEE
Confidence 77888888888877776655532 55555555555
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.16 E-value=4.3e-13 Score=130.66 Aligned_cols=266 Identities=12% Similarity=0.040 Sum_probs=127.7
Q ss_pred ccccccceecCCCc-cccccCcccccCcccceecccCcc-------------------------------cccccchhhh
Q 036143 9 AKLLALQCLDLEYT-AIKEVPEGMEMLENLVHLTIYSKM-------------------------------LIKFPAGILP 56 (355)
Q Consensus 9 ~~l~~L~~L~L~~~-~~~~lP~~i~~L~~L~~L~l~~~~-------------------------------~~~lP~~i~~ 56 (355)
..+++|++|++++| .+..+|..+.++++|++|+++++. ...+|.-+ .
T Consensus 208 ~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~-~ 286 (594)
T 2p1m_B 208 TRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVY-S 286 (594)
T ss_dssp HHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGH-H
T ss_pred HhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHH-H
Confidence 34689999999988 666777777888888888755431 11233333 5
Q ss_pred cCCCcceeeecccCCccccchhHhhcccccccceEEEeccCcccccc-cccccccccccccccc-c-eeEeecCCCcccc
Q 036143 57 KLCNLYSLRLNWGSETSRETVQEAARSSDRLDTFVGYFSKLDDFNTY-VKSSDGQRSKHFHFQV-S-TVYNGSAANTRFY 133 (355)
Q Consensus 57 ~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~~~~~~-~-~~~~~~~~~~~~~ 133 (355)
.+++|++|++++|. .....+...+..+++|++|.+..+........ ...++.|+.|...-.. . ......+++....
T Consensus 287 ~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~ 365 (594)
T 2p1m_B 287 VCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV 365 (594)
T ss_dssp HHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHH
T ss_pred hhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHH
Confidence 67788888888765 33333442466788888888875511111111 2234555555410000 0 0000001110000
Q ss_pred ceecccCCccEEEEeccCCccCCCccc-cCchhHHHH-Hh-----hcccccccccc---cccccccccccccCCCccEEe
Q 036143 134 SFLRTREANKSVCFYGCKICEREGVTI-VLPKDVQGL-IM-----RDIEDVTSLND---VFSKEQGLVNAAKFSHLKALW 203 (355)
Q Consensus 134 ~~l~~~~~~~~~~L~~l~~~~~~~~~~-~~~~~L~~L-l~-----~~~~~~~~l~~---~~~l~~~~~~~~~~~~L~~L~ 203 (355)
........++.+.+....+.......+ ..+++|+.| +. +| ..++..+. +..+ ...+++|++|+
T Consensus 366 ~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~-~~l~~~~~~~~~~~l------~~~~~~L~~L~ 438 (594)
T 2p1m_B 366 SVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAP-DYLTLEPLDIGFGAI------VEHCKDLRRLS 438 (594)
T ss_dssp HHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCC-CTTTCCCTHHHHHHH------HHHCTTCCEEE
T ss_pred HHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCc-ccccCCchhhHHHHH------HhhCCCccEEe
Confidence 000012223333333333322111100 012333333 33 22 22221100 0000 13566788888
Q ss_pred eccCCCccccchHHHHhhcCCCCeEEEecCCCCceecccCcchhhhhcccccccccCcccceeecccccccceecCCCce
Q 036143 204 FSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAV 283 (355)
Q Consensus 204 l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~ 283 (355)
+++ .+++.........+++|+.|++++|......+. .-...+++|++|++++|+. .........
T Consensus 439 L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~-------------~l~~~~~~L~~L~L~~n~~-~~~~~~~~~ 502 (594)
T 2p1m_B 439 LSG--LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMH-------------HVLSGCDSLRKLEIRDCPF-GDKALLANA 502 (594)
T ss_dssp CCS--SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHH-------------HHHHHCTTCCEEEEESCSC-CHHHHHHTG
T ss_pred ecC--cccHHHHHHHHHhchhccEeeccCCCCcHHHHH-------------HHHhcCCCcCEEECcCCCC-cHHHHHHHH
Confidence 765 444433222223377888888877653221111 0114578888888888865 221110011
Q ss_pred ecCCCceEEEEcCCCCc
Q 036143 284 LICNSLQEIQITPSCPK 300 (355)
Q Consensus 284 l~~~~L~~L~i~~~c~~ 300 (355)
..+++|++|++. +|+.
T Consensus 503 ~~l~~L~~L~l~-~~~~ 518 (594)
T 2p1m_B 503 SKLETMRSLWMS-SCSV 518 (594)
T ss_dssp GGGGGSSEEEEE-SSCC
T ss_pred HhCCCCCEEeee-CCCC
Confidence 225688888888 8865
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.13 E-value=3e-10 Score=95.34 Aligned_cols=109 Identities=20% Similarity=0.259 Sum_probs=87.0
Q ss_pred CCCCC-ccccccccceecCCCccccccCcc-cccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhH
Q 036143 2 LERVP-SLAKLLALQCLDLEYTAIKEVPEG-MEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQE 79 (355)
Q Consensus 2 l~~lP-~i~~l~~L~~L~L~~~~~~~lP~~-i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~ 79 (355)
++.+| .+ ..+|++|++++|.++.+|.. ++.+.+|++|++++|.+..+|...++.+++|++|+++++.. ......
T Consensus 19 l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~- 94 (208)
T 2o6s_A 19 RTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL-QSLPNG- 94 (208)
T ss_dssp CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTT-
T ss_pred ccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC-CccCHh-
Confidence 45667 54 46899999999999988765 68999999999999999999888669999999999998654 222222
Q ss_pred hhcccccccceEEEeccCcccccc-ccccccccccc
Q 036143 80 AARSSDRLDTFVGYFSKLDDFNTY-VKSSDGQRSKH 114 (355)
Q Consensus 80 ~l~~L~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~ 114 (355)
.++.+++|++|++..+.+...... +..+..|+.|.
T Consensus 95 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 130 (208)
T 2o6s_A 95 VFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLR 130 (208)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred HhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEE
Confidence 578999999999988877766543 56777777777
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.13 E-value=8.5e-11 Score=100.36 Aligned_cols=110 Identities=16% Similarity=0.247 Sum_probs=90.8
Q ss_pred CCCC-C-ccccccccceecCCCccccccCcc-cccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchh
Q 036143 2 LERV-P-SLAKLLALQCLDLEYTAIKEVPEG-MEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQ 78 (355)
Q Consensus 2 l~~l-P-~i~~l~~L~~L~L~~~~~~~lP~~-i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~ 78 (355)
++.+ | .+..+.+|++|++++|.+..+|.. +..+.+|++|++++|.+..+|.+.++.+++|++|+++++... .++
T Consensus 52 i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~---~lp 128 (229)
T 3e6j_A 52 ITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT---ELP 128 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC---SCC
T ss_pred cCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc---ccC
Confidence 4555 4 789999999999999999999765 589999999999999999999887699999999999987652 444
Q ss_pred HhhcccccccceEEEeccCccccc-cccccccccccc
Q 036143 79 EAARSSDRLDTFVGYFSKLDDFNT-YVKSSDGQRSKH 114 (355)
Q Consensus 79 ~~l~~L~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~ 114 (355)
..++.+++|++|++..+.+..... .+..+..|+.|.
T Consensus 129 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 165 (229)
T 3e6j_A 129 RGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAY 165 (229)
T ss_dssp TTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEE
Confidence 488999999999998887776553 355666666655
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=7.3e-11 Score=114.12 Aligned_cols=96 Identities=18% Similarity=0.155 Sum_probs=61.6
Q ss_pred ccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccccccceEE
Q 036143 13 ALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLDTFVG 92 (355)
Q Consensus 13 ~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L~l 92 (355)
.|++|++++|.++.+|. ++.+.+|++|++++|.+..+|..+ +++++|++|+++++.. ..++ .++.+++|++|++
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~-~~l~~L~~L~Ls~N~l---~~lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPAL-AALRCLEVLQASDNAL---ENVD-GVANLPRLQELLL 515 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGG-GGCTTCCEEECCSSCC---CCCG-GGTTCSSCCEEEC
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhh-hcCCCCCEEECCCCCC---CCCc-ccCCCCCCcEEEC
Confidence 36667777766666665 666667777777776666666666 6677777777766543 2245 6666667777766
Q ss_pred EeccCccc--cccccccccccccc
Q 036143 93 YFSKLDDF--NTYVKSSDGQRSKH 114 (355)
Q Consensus 93 ~~~~~~~~--~~~~~~l~~L~~L~ 114 (355)
+.+.+... +..++.++.|+.|.
T Consensus 516 s~N~l~~~~~p~~l~~l~~L~~L~ 539 (567)
T 1dce_A 516 CNNRLQQSAAIQPLVSCPRLVLLN 539 (567)
T ss_dssp CSSCCCSSSTTGGGGGCTTCCEEE
T ss_pred CCCCCCCCCCcHHHhcCCCCCEEE
Confidence 66666555 45566666666655
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.12 E-value=9.2e-11 Score=102.34 Aligned_cols=151 Identities=16% Similarity=0.180 Sum_probs=106.1
Q ss_pred CCCCCccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhh
Q 036143 2 LERVPSLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAA 81 (355)
Q Consensus 2 l~~lP~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l 81 (355)
++.++.+..+.+|++|++++|.++.+| .++.+.+|++|++++|.+..+|. + +++++|++|+++++.. ..++ .+
T Consensus 31 i~~~~~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l-~~l~~L~~L~L~~N~l---~~l~-~~ 103 (263)
T 1xeu_A 31 VTDLVSQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-L-KDLTKLEELSVNRNRL---KNLN-GI 103 (263)
T ss_dssp TTSEECHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-G-TTCSSCCEEECCSSCC---SCCT-TC
T ss_pred cccccchhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-h-ccCCCCCEEECCCCcc---CCcC-cc
Confidence 445566788999999999999999888 78899999999999999999887 5 9999999999998755 3344 44
Q ss_pred cccccccceEEEeccCccccccccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCccCCCcccc
Q 036143 82 RSSDRLDTFVGYFSKLDDFNTYVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICEREGVTIV 161 (355)
Q Consensus 82 ~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~~~~~~~ 161 (355)
.. ++|++|++..+..... ..++.++.|+.|.. ....+.+. ..+.....++.+.++++.+.+... +.
T Consensus 104 ~~-~~L~~L~L~~N~l~~~-~~l~~l~~L~~L~L-------s~N~i~~~---~~l~~l~~L~~L~L~~N~i~~~~~--l~ 169 (263)
T 1xeu_A 104 PS-ACLSRLFLDNNELRDT-DSLIHLKNLEILSI-------RNNKLKSI---VMLGFLSKLEVLDLHGNEITNTGG--LT 169 (263)
T ss_dssp CC-SSCCEEECCSSCCSBS-GGGTTCTTCCEEEC-------TTSCCCBC---GGGGGCTTCCEEECTTSCCCBCTT--ST
T ss_pred cc-CcccEEEccCCccCCC-hhhcCcccccEEEC-------CCCcCCCC---hHHccCCCCCEEECCCCcCcchHH--hc
Confidence 44 8899999987777654 34667777777762 22222222 233345567777787777766522 23
Q ss_pred CchhHHHH-Hhhc
Q 036143 162 LPKDVQGL-IMRD 173 (355)
Q Consensus 162 ~~~~L~~L-l~~~ 173 (355)
.++.|+.| +.++
T Consensus 170 ~l~~L~~L~l~~N 182 (263)
T 1xeu_A 170 RLKKVNWIDLTGQ 182 (263)
T ss_dssp TCCCCCEEEEEEE
T ss_pred cCCCCCEEeCCCC
Confidence 44455555 5554
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.11 E-value=1e-10 Score=95.46 Aligned_cols=96 Identities=27% Similarity=0.256 Sum_probs=69.2
Q ss_pred CCCCC-ccccccccceecCCCcccccc-CcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhH
Q 036143 2 LERVP-SLAKLLALQCLDLEYTAIKEV-PEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQE 79 (355)
Q Consensus 2 l~~lP-~i~~l~~L~~L~L~~~~~~~l-P~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~ 79 (355)
++.+| .+. .+|++|++++|.++.+ |..++.+.+|++|++++|.+..+|.++|+++++|++|+++++.. ......
T Consensus 24 l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l-~~l~~~- 99 (174)
T 2r9u_A 24 LASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL-KSIPRG- 99 (174)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTT-
T ss_pred CCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc-ceeCHH-
Confidence 56777 554 7888888888888766 55678888888888888888888877667888888888887543 222222
Q ss_pred hhcccccccceEEEeccCcccc
Q 036143 80 AARSSDRLDTFVGYFSKLDDFN 101 (355)
Q Consensus 80 ~l~~L~~L~~L~l~~~~~~~~~ 101 (355)
.++.+++|++|++..+......
T Consensus 100 ~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 100 AFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp TTTTCTTCSEEECCSSCBCTTB
T ss_pred HhccccCCCEEEeCCCCccccc
Confidence 4777888888888766655443
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.11 E-value=8.5e-11 Score=99.72 Aligned_cols=140 Identities=9% Similarity=0.100 Sum_probs=97.1
Q ss_pred CCCCC-ccccccccceecCCCccccccCc--ccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchh
Q 036143 2 LERVP-SLAKLLALQCLDLEYTAIKEVPE--GMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQ 78 (355)
Q Consensus 2 l~~lP-~i~~l~~L~~L~L~~~~~~~lP~--~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~ 78 (355)
++.+| .+. ..+++|++++|.++.++. .++.+.+|++|++++|.+..++.+.|+++++|++|+++++.. ......
T Consensus 23 l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l-~~~~~~ 99 (220)
T 2v70_A 23 LNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL-ENVQHK 99 (220)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-CCCCGG
T ss_pred cccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCcc-CccCHh
Confidence 56788 553 456899999999987743 378999999999999999988875459999999999998654 333333
Q ss_pred HhhcccccccceEEEeccCcccc-ccccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCc
Q 036143 79 EAARSSDRLDTFVGYFSKLDDFN-TYVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKIC 153 (355)
Q Consensus 79 ~~l~~L~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~ 153 (355)
.++.+++|++|++..+.+.... ..+..+..|+.|.. ..+.+.+. .+..+.....++.+.+.++.+.
T Consensus 100 -~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L-------~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 100 -MFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSL-------YDNQITTV-APGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp -GGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEEC-------TTSCCCCB-CTTTTTTCTTCCEEECCSCCEE
T ss_pred -HhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEEC-------CCCcCCEE-CHHHhcCCCCCCEEEecCcCCc
Confidence 6888999999999888777653 45777777777772 22222221 1222333445566666666554
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.11 E-value=1.9e-10 Score=97.52 Aligned_cols=92 Identities=24% Similarity=0.350 Sum_probs=46.4
Q ss_pred ccccccccceecCCCcccccc-CcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccc
Q 036143 7 SLAKLLALQCLDLEYTAIKEV-PEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSD 85 (355)
Q Consensus 7 ~i~~l~~L~~L~L~~~~~~~l-P~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~ 85 (355)
.+..+++|++|+|++|.++.+ |..+..+.+|++|++++|.+..+|.++|+.+++|++|+++++.. ...... .+..++
T Consensus 51 ~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l-~~~~~~-~~~~l~ 128 (220)
T 2v9t_B 51 AFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKI-NCLRVD-AFQDLH 128 (220)
T ss_dssp SSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTT-TTTTCT
T ss_pred HhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCC-CEeCHH-HcCCCC
Confidence 445555555555555555544 44455555555555555555555555445555555555555332 222222 455555
Q ss_pred cccceEEEeccCccc
Q 036143 86 RLDTFVGYFSKLDDF 100 (355)
Q Consensus 86 ~L~~L~l~~~~~~~~ 100 (355)
+|++|++..+.+...
T Consensus 129 ~L~~L~L~~N~l~~~ 143 (220)
T 2v9t_B 129 NLNLLSLYDNKLQTI 143 (220)
T ss_dssp TCCEEECCSSCCSCC
T ss_pred CCCEEECCCCcCCEE
Confidence 555555554444433
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.8e-10 Score=109.78 Aligned_cols=88 Identities=15% Similarity=0.098 Sum_probs=66.2
Q ss_pred cccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccccccceE
Q 036143 12 LALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLDTFV 91 (355)
Q Consensus 12 ~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L~ 91 (355)
.+|++|++++|+++.+|..+. .+|++|++++|.+..+| +.+++|++|++++|.. ..++ .++. +|++|+
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l---~~ip-~l~~--~L~~L~ 126 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP----ELPASLEYLDACDNRL---STLP-ELPA--SLKHLD 126 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCC---SCCC-CCCT--TCCEEE
T ss_pred CCccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc----cccCCCCEEEccCCCC---CCcc-hhhc--CCCEEE
Confidence 389999999999999998774 78999999999999998 3478999999998754 2255 3444 899999
Q ss_pred EEeccCccccccccccccccccc
Q 036143 92 GYFSKLDDFNTYVKSSDGQRSKH 114 (355)
Q Consensus 92 l~~~~~~~~~~~~~~l~~L~~L~ 114 (355)
+..+.+..++. .++.|+.|.
T Consensus 127 Ls~N~l~~lp~---~l~~L~~L~ 146 (571)
T 3cvr_A 127 VDNNQLTMLPE---LPALLEYIN 146 (571)
T ss_dssp CCSSCCSCCCC---CCTTCCEEE
T ss_pred CCCCcCCCCCC---cCccccEEe
Confidence 88777665443 344455554
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.7e-10 Score=96.88 Aligned_cols=111 Identities=21% Similarity=0.265 Sum_probs=89.0
Q ss_pred CCCCC--ccccccccceecCCCccccccCcc-cccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchh
Q 036143 2 LERVP--SLAKLLALQCLDLEYTAIKEVPEG-MEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQ 78 (355)
Q Consensus 2 l~~lP--~i~~l~~L~~L~L~~~~~~~lP~~-i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~ 78 (355)
++.+| .+..+++|++|++++|.++.+|.. ++.+.+|++|++++|.+..+|...++++++|++|+++++.. ......
T Consensus 40 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~ 118 (208)
T 2o6s_A 40 LKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQL-QSLPDG 118 (208)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTT
T ss_pred cCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcC-cccCHh
Confidence 56677 478999999999999999988766 58999999999999999999988669999999999998654 333222
Q ss_pred HhhcccccccceEEEeccCcccccc-ccccccccccc
Q 036143 79 EAARSSDRLDTFVGYFSKLDDFNTY-VKSSDGQRSKH 114 (355)
Q Consensus 79 ~~l~~L~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~ 114 (355)
.++.+++|++|++..+........ +..+..|+.|.
T Consensus 119 -~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 154 (208)
T 2o6s_A 119 -VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIW 154 (208)
T ss_dssp -TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred -HhccCCcCCEEECCCCccceeCHHHhccCCCccEEE
Confidence 578999999999988777665533 55566666555
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.10 E-value=2.8e-10 Score=103.99 Aligned_cols=38 Identities=26% Similarity=0.134 Sum_probs=23.9
Q ss_pred cCCCccEEeeccCCCccccchHHHHhhcCC--CCeEEEecCC
Q 036143 195 KFSHLKALWFSYCPNLQKLFSLQLLAALQN--LEFLVVQSCN 234 (355)
Q Consensus 195 ~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~--L~~L~l~~~~ 234 (355)
.+++|+.|+++++ +++.+.+ ..+..+++ |+.|++.+++
T Consensus 161 ~l~~L~~L~L~~N-~l~~l~~-~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 161 KLPKLMLLDLSSN-KLKKLPL-TDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp -CTTCCEEECCSS-CCCCCCH-HHHHHSCHHHHTTEECCSSC
T ss_pred cCCcCCEEECCCC-CCCccCH-HHhhhccHhhcceEEecCCC
Confidence 4677888888887 5665443 33566665 3777777543
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.08 E-value=6.7e-12 Score=104.72 Aligned_cols=107 Identities=16% Similarity=0.185 Sum_probs=72.2
Q ss_pred CCCCC-ccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHh
Q 036143 2 LERVP-SLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEA 80 (355)
Q Consensus 2 l~~lP-~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~ 80 (355)
++++| .++.+.+|++|++++|.++.+| .++.+.+|++|++++|.+..+|..+ +.+++|++|++++|.. ..++ .
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~-~~~~~L~~L~L~~N~l---~~l~-~ 110 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLD-AVADTLEELWISYNQI---ASLS-G 110 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHH-HHHHHCSEEEEEEEEC---CCHH-H
T ss_pred HhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchh-hcCCcCCEEECcCCcC---CcCC-c
Confidence 45566 6777777777777777777777 7777777777777777777777765 7777777777777644 3345 6
Q ss_pred hcccccccceEEEeccCccccc--cccccccccccc
Q 036143 81 ARSSDRLDTFVGYFSKLDDFNT--YVKSSDGQRSKH 114 (355)
Q Consensus 81 l~~L~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~ 114 (355)
++.+++|++|++..+.+..... .+..++.|+.|.
T Consensus 111 ~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~ 146 (198)
T 1ds9_A 111 IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLL 146 (198)
T ss_dssp HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEE
T ss_pred cccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEE
Confidence 7777777777777666554332 344444444444
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.08 E-value=7.6e-11 Score=117.42 Aligned_cols=105 Identities=19% Similarity=0.125 Sum_probs=82.8
Q ss_pred ccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhccccc
Q 036143 7 SLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDR 86 (355)
Q Consensus 7 ~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 86 (355)
.+..+.+|++|+|++|.+..+|..++.+.+|++|+|++|.+..+|..+ ++|++|++|++++|... .++..++.|++
T Consensus 219 ~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~-~~l~~L~~L~Ls~N~l~---~lp~~~~~l~~ 294 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEI-KNLSNLRVLDLSHNRLT---SLPAELGSCFQ 294 (727)
T ss_dssp ---CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGG-GGGTTCCEEECTTSCCS---SCCSSGGGGTT
T ss_pred hhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhh-hCCCCCCEEeCcCCcCC---ccChhhcCCCC
Confidence 677888888888888888888888888888888888888888888887 88888888888886542 33447888888
Q ss_pred ccceEEEeccCcccccccccccccccccc
Q 036143 87 LDTFVGYFSKLDDFNTYVKSSDGQRSKHF 115 (355)
Q Consensus 87 L~~L~l~~~~~~~~~~~~~~l~~L~~L~~ 115 (355)
|++|++..+.+..++..++.+..|+.|.+
T Consensus 295 L~~L~L~~N~l~~lp~~~~~l~~L~~L~L 323 (727)
T 4b8c_D 295 LKYFYFFDNMVTTLPWEFGNLCNLQFLGV 323 (727)
T ss_dssp CSEEECCSSCCCCCCSSTTSCTTCCCEEC
T ss_pred CCEEECCCCCCCccChhhhcCCCccEEeC
Confidence 88888887777777766778888877774
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.08 E-value=1.7e-10 Score=95.66 Aligned_cols=84 Identities=14% Similarity=0.130 Sum_probs=37.1
Q ss_pred ccceecCCCccccccCcc--cccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccccccce
Q 036143 13 ALQCLDLEYTAIKEVPEG--MEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLDTF 90 (355)
Q Consensus 13 ~L~~L~L~~~~~~~lP~~--i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L 90 (355)
+|++|++++|.++.+|.. ++.+.+|++|++++|.+..++.+.|+++++|++|+++++.. ...... .++.+++|++|
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~-~~~~l~~L~~L 107 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI-KEISNK-MFLGLHQLKTL 107 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCC-CEECSS-SSTTCTTCCEE
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcC-CccCHH-HhcCCCCCCEE
Confidence 455555555555444432 44555555555555544444222125555555555554322 111111 34444555555
Q ss_pred EEEeccCc
Q 036143 91 VGYFSKLD 98 (355)
Q Consensus 91 ~l~~~~~~ 98 (355)
++..+.+.
T Consensus 108 ~L~~N~l~ 115 (192)
T 1w8a_A 108 NLYDNQIS 115 (192)
T ss_dssp ECCSSCCC
T ss_pred ECCCCcCC
Confidence 55444443
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.08 E-value=1.7e-10 Score=93.76 Aligned_cols=94 Identities=26% Similarity=0.253 Sum_probs=60.1
Q ss_pred CCCCC-ccccccccceecCCCcccccc-CcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhH
Q 036143 2 LERVP-SLAKLLALQCLDLEYTAIKEV-PEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQE 79 (355)
Q Consensus 2 l~~lP-~i~~l~~L~~L~L~~~~~~~l-P~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~ 79 (355)
++.+| .+ .++|++|+|++|.++.+ |..++.+.+|++|++++|.+..+|.++|+++++|++|+++++.. ......
T Consensus 21 l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l-~~~~~~- 96 (170)
T 3g39_A 21 LASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL-KSIPRG- 96 (170)
T ss_dssp CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTT-
T ss_pred cCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCcc-CEeCHH-
Confidence 45666 45 36777777777777766 44567777777777777777777766556777777777776543 222222
Q ss_pred hhcccccccceEEEeccCcc
Q 036143 80 AARSSDRLDTFVGYFSKLDD 99 (355)
Q Consensus 80 ~l~~L~~L~~L~l~~~~~~~ 99 (355)
.+..+++|++|++..+....
T Consensus 97 ~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 97 AFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp TTTTCTTCCEEECCSSCBCT
T ss_pred HhcCCCCCCEEEeCCCCCCC
Confidence 46677777777776655543
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.07 E-value=3.1e-10 Score=96.19 Aligned_cols=154 Identities=10% Similarity=0.131 Sum_probs=86.6
Q ss_pred CccccccccceecCCCccccccCcccccCcccceecccCccccccc-chhhhcCCCcceeeecccCCccccchhHhhccc
Q 036143 6 PSLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFP-AGILPKLCNLYSLRLNWGSETSRETVQEAARSS 84 (355)
Q Consensus 6 P~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP-~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L 84 (355)
|+.|.+. -++++++++.++.+|..+.. .+++|++++|.+..++ .+.|+++++|++|+++++.. ...... .++.+
T Consensus 6 P~~C~C~-~~~l~~s~n~l~~iP~~~~~--~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i-~~i~~~-~~~~l 80 (220)
T 2v70_A 6 PEKCRCE-GTTVDCSNQKLNKIPEHIPQ--YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI-TDIEEG-AFEGA 80 (220)
T ss_dssp CTTCEEE-TTEEECCSSCCSSCCSCCCT--TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCC-CEECTT-TTTTC
T ss_pred CCCCEEC-CCEeEeCCCCcccCccCCCC--CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcC-CEECHH-HhCCC
Confidence 3344443 35777777777777776643 4577777777777763 34347777777777776543 222222 57777
Q ss_pred ccccceEEEeccCccccc-cccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCccCCCccccCc
Q 036143 85 DRLDTFVGYFSKLDDFNT-YVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICEREGVTIVLP 163 (355)
Q Consensus 85 ~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~~~~~~~~~ 163 (355)
++|++|++..+.+..... .+..+..|+.|... ...+.+. .+..+.....++.+.++++.+.+..+..+..+
T Consensus 81 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls-------~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 152 (220)
T 2v70_A 81 SGVNEILLTSNRLENVQHKMFKGLESLKTLMLR-------SNRITCV-GNDSFIGLSSVRLLSLYDNQITTVAPGAFDTL 152 (220)
T ss_dssp TTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT-------TSCCCCB-CTTSSTTCTTCSEEECTTSCCCCBCTTTTTTC
T ss_pred CCCCEEECCCCccCccCHhHhcCCcCCCEEECC-------CCcCCeE-CHhHcCCCccCCEEECCCCcCCEECHHHhcCC
Confidence 777777777666665543 35666666666621 1122211 11222333456666666666655433333344
Q ss_pred hhHHHH-Hhh
Q 036143 164 KDVQGL-IMR 172 (355)
Q Consensus 164 ~~L~~L-l~~ 172 (355)
++|+.| +.+
T Consensus 153 ~~L~~L~L~~ 162 (220)
T 2v70_A 153 HSLSTLNLLA 162 (220)
T ss_dssp TTCCEEECCS
T ss_pred CCCCEEEecC
Confidence 445444 444
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.03 E-value=2.3e-10 Score=92.57 Aligned_cols=108 Identities=17% Similarity=0.174 Sum_probs=89.2
Q ss_pred CCC-ccccccccceecCCCccccccCcccccCcccceecccCccccc-ccchhhhcCCCcceeeecccCCccccchhHhh
Q 036143 4 RVP-SLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIK-FPAGILPKLCNLYSLRLNWGSETSRETVQEAA 81 (355)
Q Consensus 4 ~lP-~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~-lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l 81 (355)
.+| .+..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. +|..+ +++++|++|++++|.......+. .+
T Consensus 40 ~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~-~l 116 (168)
T 2ell_A 40 KIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLA-EKLPNLTHLNLSGNKLKDISTLE-PL 116 (168)
T ss_dssp BCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHH-HHCTTCCEEECBSSSCCSSGGGG-GG
T ss_pred hHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHH-hhCCCCCEEeccCCccCcchhHH-HH
Confidence 788 779999999999999999988 789999999999999999988 55555 88999999999997653222334 89
Q ss_pred cccccccceEEEeccCccccc----cccccccccccc
Q 036143 82 RSSDRLDTFVGYFSKLDDFNT----YVKSSDGQRSKH 114 (355)
Q Consensus 82 ~~L~~L~~L~l~~~~~~~~~~----~~~~l~~L~~L~ 114 (355)
+.+++|++|++..+.....+. .+..++.|+.|.
T Consensus 117 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~ 153 (168)
T 2ell_A 117 KKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLD 153 (168)
T ss_dssp SSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEET
T ss_pred hcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEec
Confidence 999999999998887766654 566777777776
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.02 E-value=9.9e-10 Score=105.92 Aligned_cols=95 Identities=17% Similarity=0.236 Sum_probs=75.8
Q ss_pred CCCCC-ccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHh
Q 036143 2 LERVP-SLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEA 80 (355)
Q Consensus 2 l~~lP-~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~ 80 (355)
|+.+| .+. .+|++|++++|.++.+| +.+.+|++|++++|.+..+|. + ++ +|++|++++|.. ..++ .
T Consensus 71 L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l-~~--~L~~L~Ls~N~l---~~lp-~ 137 (571)
T 3cvr_A 71 LSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-L-PA--SLKHLDVDNNQL---TMLP-E 137 (571)
T ss_dssp CSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-C-CT--TCCEEECCSSCC---SCCC-C
T ss_pred CCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-h-hc--CCCEEECCCCcC---CCCC-C
Confidence 56788 664 89999999999999999 568999999999999999998 6 66 999999998754 3355 4
Q ss_pred hcccccccceEEEeccCccccccccccccccccc
Q 036143 81 ARSSDRLDTFVGYFSKLDDFNTYVKSSDGQRSKH 114 (355)
Q Consensus 81 l~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 114 (355)
.+++|++|++..+.+..++. .++.|+.|.
T Consensus 138 --~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~ 166 (571)
T 3cvr_A 138 --LPALLEYINADNNQLTMLPE---LPTSLEVLS 166 (571)
T ss_dssp --CCTTCCEEECCSSCCSCCCC---CCTTCCEEE
T ss_pred --cCccccEEeCCCCccCcCCC---cCCCcCEEE
Confidence 78999999998877765443 334455555
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.00 E-value=8.5e-10 Score=90.07 Aligned_cols=109 Identities=18% Similarity=0.245 Sum_probs=69.2
Q ss_pred CCCCC-ccccccccceecCCCccccccCcc-cccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhH
Q 036143 2 LERVP-SLAKLLALQCLDLEYTAIKEVPEG-MEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQE 79 (355)
Q Consensus 2 l~~lP-~i~~l~~L~~L~L~~~~~~~lP~~-i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~ 79 (355)
++.+| .+ ..+|++|++++|.++.+|.. ++.+.+|++|++++|.+..+|...++.+++|++|+++++.. ......
T Consensus 19 l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~- 94 (177)
T 2o6r_A 19 LTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL-QSLPNG- 94 (177)
T ss_dssp CSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTT-
T ss_pred CccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCc-cccCHH-
Confidence 45566 33 35777777777777766554 47777778888877777777766557777777777777543 222222
Q ss_pred hhcccccccceEEEeccCcccccc-ccccccccccc
Q 036143 80 AARSSDRLDTFVGYFSKLDDFNTY-VKSSDGQRSKH 114 (355)
Q Consensus 80 ~l~~L~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~ 114 (355)
.++.+++|++|++..+.+...+.. +..++.|+.|.
T Consensus 95 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 130 (177)
T 2o6r_A 95 VFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIW 130 (177)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred HhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEE
Confidence 466777777777766665554433 34444444444
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.00 E-value=5.8e-11 Score=108.58 Aligned_cols=90 Identities=14% Similarity=0.219 Sum_probs=66.0
Q ss_pred ccccc-ccceecCCCcccccc-CcccccC-----cccceecccCcccccccch-h---hhcC-CCcceeeecccCCcccc
Q 036143 8 LAKLL-ALQCLDLEYTAIKEV-PEGMEML-----ENLVHLTIYSKMLIKFPAG-I---LPKL-CNLYSLRLNWGSETSRE 75 (355)
Q Consensus 8 i~~l~-~L~~L~L~~~~~~~l-P~~i~~L-----~~L~~L~l~~~~~~~lP~~-i---~~~L-~~L~~L~l~~~~~~~~~ 75 (355)
+..+. +|++|++++|.+... +..+..+ .+|++|++++|.+...+.. + +..+ ++|++|++++|.. ...
T Consensus 46 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l-~~~ 124 (362)
T 3goz_A 46 FANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF-SSK 124 (362)
T ss_dssp HHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG-GGS
T ss_pred HHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcC-CcH
Confidence 34566 899999999998855 5566665 9999999999998876554 2 2445 8999999998754 333
Q ss_pred chh---Hhhcc-cccccceEEEeccCc
Q 036143 76 TVQ---EAARS-SDRLDTFVGYFSKLD 98 (355)
Q Consensus 76 ~~~---~~l~~-L~~L~~L~l~~~~~~ 98 (355)
... ..+.. .++|++|++..+...
T Consensus 125 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 125 SSSEFKQAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp CHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred HHHHHHHHHHhCCCceeEEEccCCcCC
Confidence 333 12444 369999999877665
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.00 E-value=5.7e-10 Score=92.57 Aligned_cols=97 Identities=20% Similarity=0.158 Sum_probs=81.4
Q ss_pred CCCCCC-ccccccccceecCCCccccccCc-ccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchh
Q 036143 1 RLERVP-SLAKLLALQCLDLEYTAIKEVPE-GMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQ 78 (355)
Q Consensus 1 ~l~~lP-~i~~l~~L~~L~L~~~~~~~lP~-~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~ 78 (355)
+++.+| .+..+.+|++|++++|.++.++. .+..+.+|++|++++|.+..+|...|+.+++|++|+++++.. ......
T Consensus 42 ~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l-~~~~~~ 120 (193)
T 2wfh_A 42 QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDI-SVVPEG 120 (193)
T ss_dssp CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCC-CBCCTT
T ss_pred cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCC-CeeChh
Confidence 367889 99999999999999999998864 589999999999999999999887559999999999998654 222222
Q ss_pred HhhcccccccceEEEeccCcc
Q 036143 79 EAARSSDRLDTFVGYFSKLDD 99 (355)
Q Consensus 79 ~~l~~L~~L~~L~l~~~~~~~ 99 (355)
.+..+++|++|++..+....
T Consensus 121 -~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 121 -AFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp -TTTTCTTCCEEECCSSCEEC
T ss_pred -hhhcCccccEEEeCCCCeec
Confidence 58889999999997666543
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.00 E-value=2.6e-10 Score=113.54 Aligned_cols=95 Identities=18% Similarity=0.114 Sum_probs=85.0
Q ss_pred CCCCCC-ccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhH
Q 036143 1 RLERVP-SLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQE 79 (355)
Q Consensus 1 ~l~~lP-~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~ 79 (355)
++..+| .+.++++|++|+|++|.++.+|..+++|.+|++|+|++|.+..+|.++ ++|++|++|++++|.. ..++.
T Consensus 235 ~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~-~~l~~L~~L~L~~N~l---~~lp~ 310 (727)
T 4b8c_D 235 QIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAEL-GSCFQLKYFYFFDNMV---TTLPW 310 (727)
T ss_dssp CCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSG-GGGTTCSEEECCSSCC---CCCCS
T ss_pred CCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhh-cCCCCCCEEECCCCCC---CccCh
Confidence 356789 889999999999999999999999999999999999999999999998 9999999999998754 24444
Q ss_pred hhcccccccceEEEeccCcc
Q 036143 80 AARSSDRLDTFVGYFSKLDD 99 (355)
Q Consensus 80 ~l~~L~~L~~L~l~~~~~~~ 99 (355)
.++.|++|++|++..|.+..
T Consensus 311 ~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 311 EFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp STTSCTTCCCEECTTSCCCS
T ss_pred hhhcCCCccEEeCCCCccCC
Confidence 79999999999998887765
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=98.98 E-value=4.6e-10 Score=93.06 Aligned_cols=96 Identities=16% Similarity=0.170 Sum_probs=80.5
Q ss_pred CCCCC-c--cccccccceecCCCcccccc-CcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccch
Q 036143 2 LERVP-S--LAKLLALQCLDLEYTAIKEV-PEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETV 77 (355)
Q Consensus 2 l~~lP-~--i~~l~~L~~L~L~~~~~~~l-P~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~ 77 (355)
++.+| . ++.+++|++|++++|.++.+ |..++.+.+|++|++++|.+..+|...|+.+++|++|+++++.. .....
T Consensus 41 i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~ 119 (192)
T 1w8a_A 41 LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQI-SCVMP 119 (192)
T ss_dssp CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCC-CEECT
T ss_pred CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcC-CeeCH
Confidence 45666 3 88999999999999999977 77899999999999999999999887559999999999998654 33333
Q ss_pred hHhhcccccccceEEEeccCcc
Q 036143 78 QEAARSSDRLDTFVGYFSKLDD 99 (355)
Q Consensus 78 ~~~l~~L~~L~~L~l~~~~~~~ 99 (355)
. .++.+++|++|++..+....
T Consensus 120 ~-~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 120 G-SFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp T-SSTTCTTCCEEECTTCCBCC
T ss_pred H-HhhcCCCCCEEEeCCCCccC
Confidence 4 78899999999997666543
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.96 E-value=6.6e-10 Score=101.52 Aligned_cols=109 Identities=17% Similarity=0.105 Sum_probs=81.5
Q ss_pred CCCCC-ccccccccceecCCCccccccCcc-cc-cCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchh
Q 036143 2 LERVP-SLAKLLALQCLDLEYTAIKEVPEG-ME-MLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQ 78 (355)
Q Consensus 2 l~~lP-~i~~l~~L~~L~L~~~~~~~lP~~-i~-~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~ 78 (355)
|+.+| .+. ..+++|+|++|.++.+|.. +. .+.+|++|++++|.+..+|.+.|+++++|++|+++++.. ......
T Consensus 30 l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l-~~~~~~ 106 (361)
T 2xot_A 30 LPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL-HTLDEF 106 (361)
T ss_dssp CSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-CEECTT
T ss_pred cCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcC-CcCCHH
Confidence 66777 554 4688899999988887665 44 888999999999988888866458889999999988653 222222
Q ss_pred HhhcccccccceEEEeccCcccc-ccccccccccccc
Q 036143 79 EAARSSDRLDTFVGYFSKLDDFN-TYVKSSDGQRSKH 114 (355)
Q Consensus 79 ~~l~~L~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~ 114 (355)
.+..+++|++|++..+.+.... ..+..+..|+.|.
T Consensus 107 -~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 142 (361)
T 2xot_A 107 -LFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLY 142 (361)
T ss_dssp -TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred -HhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEE
Confidence 5788889999988877776653 4467777777776
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=98.94 E-value=9.3e-10 Score=87.10 Aligned_cols=108 Identities=13% Similarity=0.112 Sum_probs=87.5
Q ss_pred CCC-ccccccccceecCCCccccccCcccccCcccceecccCccccc-ccchhhhcCCCcceeeecccCCccccchhHhh
Q 036143 4 RVP-SLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIK-FPAGILPKLCNLYSLRLNWGSETSRETVQEAA 81 (355)
Q Consensus 4 ~lP-~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~-lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l 81 (355)
.+| .++.+++|++|++++|.++.+ ..++.+.+|++|++++|.+.. +|..+ +++++|++|++++|.. .....+..+
T Consensus 33 ~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~ls~N~i-~~~~~~~~~ 109 (149)
T 2je0_A 33 KLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLA-EKCPNLTHLNLSGNKI-KDLSTIEPL 109 (149)
T ss_dssp BCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHH-HHCTTCCEEECTTSCC-CSHHHHGGG
T ss_pred HHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHh-hhCCCCCEEECCCCcC-CChHHHHHH
Confidence 688 789999999999999999888 788999999999999999988 66666 8899999999998764 222222389
Q ss_pred cccccccceEEEeccCccccc----cccccccccccc
Q 036143 82 RSSDRLDTFVGYFSKLDDFNT----YVKSSDGQRSKH 114 (355)
Q Consensus 82 ~~L~~L~~L~l~~~~~~~~~~----~~~~l~~L~~L~ 114 (355)
+.+++|++|++..+.....+. .++.++.|+.|+
T Consensus 110 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~ 146 (149)
T 2je0_A 110 KKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLD 146 (149)
T ss_dssp GGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEET
T ss_pred hhCCCCCEEeCcCCcccchHHHHHHHHHHCCCccccc
Confidence 999999999998777765543 456666666665
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.92 E-value=2e-09 Score=87.80 Aligned_cols=96 Identities=24% Similarity=0.299 Sum_probs=80.2
Q ss_pred CCCCC--ccccccccceecCCCccccccCcc-cccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchh
Q 036143 2 LERVP--SLAKLLALQCLDLEYTAIKEVPEG-MEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQ 78 (355)
Q Consensus 2 l~~lP--~i~~l~~L~~L~L~~~~~~~lP~~-i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~ 78 (355)
++.+| .++.+++|++|++++|.++.+|.. ++.+.+|++|++++|.+..+|...++++++|++|+++++.. ......
T Consensus 40 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~ 118 (177)
T 2o6r_A 40 LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQL-KSVPDG 118 (177)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-SCCCTT
T ss_pred ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcc-eEeCHH
Confidence 56677 478999999999999999988766 58999999999999999999988669999999999998754 333222
Q ss_pred HhhcccccccceEEEeccCcc
Q 036143 79 EAARSSDRLDTFVGYFSKLDD 99 (355)
Q Consensus 79 ~~l~~L~~L~~L~l~~~~~~~ 99 (355)
.+..+++|++|++..+....
T Consensus 119 -~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 119 -IFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp -TTTTCTTCCEEECCSSCBCC
T ss_pred -HhcCCcccCEEEecCCCeec
Confidence 46889999999998776654
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=98.92 E-value=2.9e-11 Score=100.86 Aligned_cols=95 Identities=23% Similarity=0.274 Sum_probs=80.6
Q ss_pred CCCCCccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhh
Q 036143 2 LERVPSLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAA 81 (355)
Q Consensus 2 l~~lP~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l 81 (355)
++.+|.++.+++|++|++++|.++.+|..++.+++|++|++++|.+..+| .+ +++++|++|+++++.......++ .+
T Consensus 60 l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~-~~l~~L~~L~l~~N~i~~~~~~~-~l 136 (198)
T 1ds9_A 60 IEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GI-EKLVNLRVLYMSNNKITNWGEID-KL 136 (198)
T ss_dssp ESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HH-HHHHHSSEEEESEEECCCHHHHH-HH
T ss_pred CccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-cc-ccCCCCCEEECCCCcCCchhHHH-HH
Confidence 45677888999999999999999999998899999999999999999988 56 99999999999987552222224 78
Q ss_pred cccccccceEEEeccCcc
Q 036143 82 RSSDRLDTFVGYFSKLDD 99 (355)
Q Consensus 82 ~~L~~L~~L~l~~~~~~~ 99 (355)
..+++|++|++..+...+
T Consensus 137 ~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 137 AALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp TTTTTCSEEEECSCHHHH
T ss_pred hcCCCCCEEEecCCcccc
Confidence 999999999998776544
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=1.5e-09 Score=104.86 Aligned_cols=94 Identities=23% Similarity=0.221 Sum_probs=53.3
Q ss_pred CCCCCccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccc-hhHh
Q 036143 2 LERVPSLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRET-VQEA 80 (355)
Q Consensus 2 l~~lP~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~-~~~~ 80 (355)
|+.+|.++.+++|++|+|++|.++.+|..++.+++|++|++++|.+..+| ++ +++++|++|++++|.. .... +. .
T Consensus 453 l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l-~~l~~L~~L~Ls~N~l-~~~~~p~-~ 528 (567)
T 1dce_A 453 LTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GV-ANLPRLQELLLCNNRL-QQSAAIQ-P 528 (567)
T ss_dssp CSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GG-TTCSSCCEEECCSSCC-CSSSTTG-G
T ss_pred CCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-cc-CCCCCCcEEECCCCCC-CCCCCcH-H
Confidence 44555556666666666666666666666666666666666666666655 44 6666666666665432 2221 22 5
Q ss_pred hcccccccceEEEeccCcc
Q 036143 81 ARSSDRLDTFVGYFSKLDD 99 (355)
Q Consensus 81 l~~L~~L~~L~l~~~~~~~ 99 (355)
++.+++|++|++..+....
T Consensus 529 l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 529 LVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp GGGCTTCCEEECTTSGGGG
T ss_pred HhcCCCCCEEEecCCcCCC
Confidence 6666666666665554443
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=98.85 E-value=1.5e-09 Score=88.51 Aligned_cols=111 Identities=16% Similarity=0.227 Sum_probs=84.6
Q ss_pred CCCCCcccccc-ccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHh
Q 036143 2 LERVPSLAKLL-ALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEA 80 (355)
Q Consensus 2 l~~lP~i~~l~-~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~ 80 (355)
++.+|.+..+. +|++|++++|.++.+ ..++.+++|++|++++|.+..+|.++++.+++|++|+++++.......+. .
T Consensus 31 l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~-~ 108 (176)
T 1a9n_A 31 IPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLD-P 108 (176)
T ss_dssp CCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGG-G
T ss_pred CchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhH-h
Confidence 55677666666 999999999988887 57889999999999999999888776689999999999987552212223 6
Q ss_pred hcccccccceEEEeccCcccccc----ccccccccccc
Q 036143 81 ARSSDRLDTFVGYFSKLDDFNTY----VKSSDGQRSKH 114 (355)
Q Consensus 81 l~~L~~L~~L~l~~~~~~~~~~~----~~~l~~L~~L~ 114 (355)
++.+++|++|++..+.....+.. +..++.|+.|+
T Consensus 109 l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld 146 (176)
T 1a9n_A 109 LASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 146 (176)
T ss_dssp GGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred hhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeC
Confidence 88889999999987776555443 55666666665
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.83 E-value=6.6e-08 Score=86.95 Aligned_cols=100 Identities=18% Similarity=0.133 Sum_probs=66.3
Q ss_pred CCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCceecccCcchhhhhcccccccccCcccc-eeeccccccc
Q 036143 196 FSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLK-KLWLSFLPEL 274 (355)
Q Consensus 196 ~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l 274 (355)
+++|+.+++.++ +++.+.. ..+.++++|+.+.+.+. +..+.. ..+..+++|+ .+.+.+ .+
T Consensus 225 ~~~L~~l~L~~n-~i~~I~~-~aF~~~~~L~~l~l~~n--i~~I~~-------------~aF~~~~~L~~~l~l~~--~l 285 (329)
T 3sb4_A 225 MPNLVSLDISKT-NATTIPD-FTFAQKKYLLKIKLPHN--LKTIGQ-------------RVFSNCGRLAGTLELPA--SV 285 (329)
T ss_dssp CTTCCEEECTTB-CCCEECT-TTTTTCTTCCEEECCTT--CCEECT-------------TTTTTCTTCCEEEEECT--TC
T ss_pred cCCCeEEECCCC-CcceecH-hhhhCCCCCCEEECCcc--cceehH-------------HHhhCChhccEEEEEcc--cc
Confidence 678888888876 4555433 33677888888888753 555542 1556777888 888866 57
Q ss_pred ceecCCCceec-CCCceEEEEcCCCCccccccCCC-CCCCCCCCCCCCCeeEEE
Q 036143 275 KSVCSDNAVLI-CNSLQEIQITPSCPKLKRLSLRL-PPLDNGQPSPSPALEVIK 326 (355)
Q Consensus 275 ~~i~~~~~~l~-~~~L~~L~i~~~c~~L~~lp~~~-~~l~~~~~~~~~~L~~l~ 326 (355)
+.|.. +++. +++|+.+.+. -.+++.++.+. ..++ +|+.|+
T Consensus 286 ~~I~~--~aF~~c~~L~~l~l~--~n~i~~I~~~aF~~~~--------~L~~ly 327 (329)
T 3sb4_A 286 TAIEF--GAFMGCDNLRYVLAT--GDKITTLGDELFGNGV--------PSKLIY 327 (329)
T ss_dssp CEECT--TTTTTCTTEEEEEEC--SSCCCEECTTTTCTTC--------CCCEEE
T ss_pred eEEch--hhhhCCccCCEEEeC--CCccCccchhhhcCCc--------chhhhc
Confidence 77766 5554 6788888883 35777776533 4433 777765
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=98.82 E-value=5.8e-09 Score=84.56 Aligned_cols=98 Identities=14% Similarity=0.161 Sum_probs=79.6
Q ss_pred ccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccccccceEE
Q 036143 13 ALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLDTFVG 92 (355)
Q Consensus 13 ~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L~l 92 (355)
..++++++++.++.+|..+. .+|++|++++|.+..++.+.|+++++|++|+++++.. ...... .+..+++|++|++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~-~f~~l~~L~~L~L 85 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL-TVLPAG-VFDKLTQLTQLSL 85 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC-CCCCTT-TTTTCTTCCEEEC
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCc-CccChh-hccCCCCCCEEEC
Confidence 56899999999999998875 8999999999999999666459999999999998754 333322 5789999999999
Q ss_pred EeccCcccccc-ccccccccccc
Q 036143 93 YFSKLDDFNTY-VKSSDGQRSKH 114 (355)
Q Consensus 93 ~~~~~~~~~~~-~~~l~~L~~L~ 114 (355)
..+.+...... +..+..|+.|.
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCccCEeCHHHhcCCCCCCEEE
Confidence 98888776643 66777777666
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.80 E-value=5.5e-09 Score=94.72 Aligned_cols=95 Identities=18% Similarity=0.128 Sum_probs=69.6
Q ss_pred CCCCCccccccccceecCCC-ccccccC-cccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhH
Q 036143 2 LERVPSLAKLLALQCLDLEY-TAIKEVP-EGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQE 79 (355)
Q Consensus 2 l~~lP~i~~l~~L~~L~L~~-~~~~~lP-~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~ 79 (355)
|+.+|.+..+++|++|+|++ |.++.+| ..++.|.+|++|+|++|.+..+|...|++|++|++|+++++.. ......
T Consensus 21 l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~- 98 (347)
T 2ifg_A 21 LDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL-ESLSWK- 98 (347)
T ss_dssp CTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC-SCCCST-
T ss_pred CCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc-ceeCHH-
Confidence 66788888888888888886 8888776 4578888888888888888888776568888888888887644 222222
Q ss_pred hhcccccccceEEEeccCcc
Q 036143 80 AARSSDRLDTFVGYFSKLDD 99 (355)
Q Consensus 80 ~l~~L~~L~~L~l~~~~~~~ 99 (355)
.+..+. |++|++..+....
T Consensus 99 ~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 99 TVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp TTCSCC-CCEEECCSSCCCC
T ss_pred HcccCC-ceEEEeeCCCccC
Confidence 333444 8888887666543
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.79 E-value=9e-09 Score=83.75 Aligned_cols=104 Identities=14% Similarity=0.144 Sum_probs=81.2
Q ss_pred CccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccc
Q 036143 6 PSLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSD 85 (355)
Q Consensus 6 P~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~ 85 (355)
|+-|.+ .-+.++++++.++.+|..+. .+|++|++++|.+..++.+.|+++++|++|+++++.. ...... .++.++
T Consensus 7 P~~C~C-~~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~i~~~-~~~~l~ 81 (174)
T 2r9u_A 7 PSQCSC-DQTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKL-TAIPTG-VFDKLT 81 (174)
T ss_dssp CTTSEE-CSSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTT-TTTTCT
T ss_pred CCCCEE-CCcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCC-CccChh-HhCCcc
Confidence 333444 34889999999999999886 8999999999999999665559999999999998754 222222 468999
Q ss_pred cccceEEEeccCcccccc-ccccccccccc
Q 036143 86 RLDTFVGYFSKLDDFNTY-VKSSDGQRSKH 114 (355)
Q Consensus 86 ~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~ 114 (355)
+|++|++..+.+...+.. +..++.|+.|.
T Consensus 82 ~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 82 QLTQLDLNDNHLKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred hhhEEECCCCccceeCHHHhccccCCCEEE
Confidence 999999998888776644 66667776666
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.52 E-value=1.4e-07 Score=85.36 Aligned_cols=104 Identities=17% Similarity=0.098 Sum_probs=80.3
Q ss_pred Cccc-cccccceecCCCc-cccccCcccccCcccceecccC-cccccccchhhhcCCCcceeeecccCCccccchhHhhc
Q 036143 6 PSLA-KLLALQCLDLEYT-AIKEVPEGMEMLENLVHLTIYS-KMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAAR 82 (355)
Q Consensus 6 P~i~-~l~~L~~L~L~~~-~~~~lP~~i~~L~~L~~L~l~~-~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~ 82 (355)
|+.| .+.. ..++.+++ +++.+|. ++.+.+|++|+|++ |.+..+|.+.|+.|++|++|+++++.. .+.... .++
T Consensus 2 p~~c~~C~~-~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~-~~~ 77 (347)
T 2ifg_A 2 PDACCPHGS-SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL-RFVAPD-AFH 77 (347)
T ss_dssp CSSSCCSSS-SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCC-CEECTT-GGG
T ss_pred CCcCccccC-CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCcc-ceeCHH-Hhc
Confidence 3344 4544 45688888 8999999 99999999999997 999999976559999999999998653 444333 789
Q ss_pred ccccccceEEEeccCccccccc-cccccccccc
Q 036143 83 SSDRLDTFVGYFSKLDDFNTYV-KSSDGQRSKH 114 (355)
Q Consensus 83 ~L~~L~~L~l~~~~~~~~~~~~-~~l~~L~~L~ 114 (355)
.|++|++|+++.+.+...+... ..+. |+.|.
T Consensus 78 ~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~ 109 (347)
T 2ifg_A 78 FTPRLSRLNLSFNALESLSWKTVQGLS-LQELV 109 (347)
T ss_dssp SCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEE
T ss_pred CCcCCCEEeCCCCccceeCHHHcccCC-ceEEE
Confidence 9999999999988887766443 3333 66555
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=98.35 E-value=3.7e-06 Score=77.58 Aligned_cols=251 Identities=10% Similarity=0.067 Sum_probs=133.5
Q ss_pred CCCC--ccccccccceecCCCccccccCcc-cccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhH
Q 036143 3 ERVP--SLAKLLALQCLDLEYTAIKEVPEG-MEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQE 79 (355)
Q Consensus 3 ~~lP--~i~~l~~L~~L~L~~~~~~~lP~~-i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~ 79 (355)
+.|+ .|.++ +|+.+.+..+ ++.++.. +.+ .+|+.+.+.. .+..++...|..+++|+.+++..+.. ..++.
T Consensus 125 ~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l---~~I~~ 197 (401)
T 4fdw_A 125 KSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKI---TKLPA 197 (401)
T ss_dssp CEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCC---SEECT
T ss_pred CEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcc---eEech
Confidence 3444 45554 6777777654 6666444 344 3677777775 56667666667778888887765332 11111
Q ss_pred hhcccccccceEEEeccCcccc-ccccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCccCCCc
Q 036143 80 AARSSDRLDTFVGYFSKLDDFN-TYVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICEREGV 158 (355)
Q Consensus 80 ~l~~L~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~~~~ 158 (355)
......+|+.+.+. ++..... ..+..+..|+.+..+-++..+......+ ..+....+
T Consensus 198 ~aF~~~~L~~l~lp-~~l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~----------~~L~~i~l----------- 255 (401)
T 4fdw_A 198 STFVYAGIEEVLLP-VTLKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRE----------SGITTVKL----------- 255 (401)
T ss_dssp TTTTTCCCSEEECC-TTCCEECTTTTTTCTTCCCEECCTTCCEECTTTTTT----------CCCSEEEE-----------
T ss_pred hhEeecccCEEEeC-CchheehhhHhhCCCCCCEEecCCCccCcccccccc----------CCccEEEe-----------
Confidence 22224677777664 2232222 2244555555555222211111000000 01111111
Q ss_pred cccCchhHHHHHhhcccccccccccccccccccccccCCCccEEeeccCCCc----cccchHHHHhhcCCCCeEEEecCC
Q 036143 159 TIVLPKDVQGLIMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNL----QKLFSLQLLAALQNLEFLVVQSCN 234 (355)
Q Consensus 159 ~~~~~~~L~~Ll~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l----~~~~~~~~l~~L~~L~~L~l~~~~ 234 (355)
+ ..++.+... ....+++|+.+.+.+.... +.+ ....+.++++|+.+.+. .
T Consensus 256 ----p-----------~~i~~I~~~--------aF~~c~~L~~l~l~~~~~~~~~~~~I-~~~aF~~c~~L~~l~l~--~ 309 (401)
T 4fdw_A 256 ----P-----------NGVTNIASR--------AFYYCPELAEVTTYGSTFNDDPEAMI-HPYCLEGCPKLARFEIP--E 309 (401)
T ss_dssp ----E-----------TTCCEECTT--------TTTTCTTCCEEEEESSCCCCCTTCEE-CTTTTTTCTTCCEECCC--T
T ss_pred ----C-----------CCccEEChh--------HhhCCCCCCEEEeCCccccCCcccEE-CHHHhhCCccCCeEEeC--C
Confidence 1 112222210 0135678888888765211 122 22346788899999887 3
Q ss_pred CCceecccCcchhhhhcccccccccCcccceeecccccccceecCCCceec-CCCceEEEEcCCCCccccccCCCCCCCC
Q 036143 235 RNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAVLI-CNSLQEIQITPSCPKLKRLSLRLPPLDN 313 (355)
Q Consensus 235 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~-~~~L~~L~i~~~c~~L~~lp~~~~~l~~ 313 (355)
.+..+.. ..+..+++|+.+.+.. .++.|.. +++. + +|+.+.+. +. .+..++.+.- .
T Consensus 310 ~i~~I~~-------------~aF~~c~~L~~l~lp~--~l~~I~~--~aF~~~-~L~~l~l~-~n-~~~~l~~~~F--~- 366 (401)
T 4fdw_A 310 SIRILGQ-------------GLLGGNRKVTQLTIPA--NVTQINF--SAFNNT-GIKEVKVE-GT-TPPQVFEKVW--Y- 366 (401)
T ss_dssp TCCEECT-------------TTTTTCCSCCEEEECT--TCCEECT--TSSSSS-CCCEEEEC-CS-SCCBCCCSSC--C-
T ss_pred ceEEEhh-------------hhhcCCCCccEEEECc--cccEEcH--HhCCCC-CCCEEEEc-CC-CCcccccccc--c-
Confidence 4555532 1556778999999854 4777766 5655 5 89999996 43 5555543321 1
Q ss_pred CCCCCCCCeeEEEehhhhhcc
Q 036143 314 GQPSPSPALEVIKIRKELWES 334 (355)
Q Consensus 314 ~~~~~~~~L~~l~~~~~~~~~ 334 (355)
+...++..|+++.+..+.
T Consensus 367 ---~~~~~l~~l~vp~~~~~~ 384 (401)
T 4fdw_A 367 ---GFPDDITVIRVPAESVEK 384 (401)
T ss_dssp ---CSCTTCCEEEECGGGHHH
T ss_pred ---CCCCCccEEEeCHHHHHH
Confidence 222378899996665444
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.24 E-value=6e-07 Score=72.33 Aligned_cols=91 Identities=12% Similarity=0.079 Sum_probs=62.6
Q ss_pred CC-ccccccccceecCCCcccccc-CcccccCcccceecccCc-ccccccchhhhcC----CCcceeeecccCCccccch
Q 036143 5 VP-SLAKLLALQCLDLEYTAIKEV-PEGMEMLENLVHLTIYSK-MLIKFPAGILPKL----CNLYSLRLNWGSETSRETV 77 (355)
Q Consensus 5 lP-~i~~l~~L~~L~L~~~~~~~l-P~~i~~L~~L~~L~l~~~-~~~~lP~~i~~~L----~~L~~L~l~~~~~~~~~~~ 77 (355)
+| ....-.+|+.||+++|.++.. -..+..+++|++|++++| .++.---.-++.+ ++|++|++++|...+..++
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl 132 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI 132 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence 55 222335688888888876532 244678888888888888 4554322212554 3688888888877777777
Q ss_pred hHhhcccccccceEEEecc
Q 036143 78 QEAARSSDRLDTFVGYFSK 96 (355)
Q Consensus 78 ~~~l~~L~~L~~L~l~~~~ 96 (355)
. .+..+++|++|++..+.
T Consensus 133 ~-~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 133 I-ALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp H-HGGGCTTCCEEEEESCT
T ss_pred H-HHhcCCCCCEEECCCCC
Confidence 7 78888888888887554
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.01 E-value=2.7e-06 Score=68.54 Aligned_cols=90 Identities=11% Similarity=0.069 Sum_probs=62.9
Q ss_pred CCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCceecccCcchhhhhccccccccc----Ccccceeeccccc
Q 036143 197 SHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITIT----LPRLKKLWLSFLP 272 (355)
Q Consensus 197 ~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~ 272 (355)
.+|++|++++|. +++.. +..+.++++|++|++++|..+.+.-- ..+.. .++|++|+|++|+
T Consensus 61 ~~L~~LDLs~~~-Itd~G-L~~L~~~~~L~~L~L~~C~~ItD~gL-------------~~L~~~~~~~~~L~~L~Ls~C~ 125 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIG-FDHMEGLQYVEKIRLCKCHYIEDGCL-------------ERLSQLENLQKSMLEMEIISCG 125 (176)
T ss_dssp CCEEEEEEESCC-CCGGG-GGGGTTCSCCCEEEEESCTTCCHHHH-------------HHHHTCHHHHHHCCEEEEESCT
T ss_pred ceEeEEeCcCCC-ccHHH-HHHhcCCCCCCEEEeCCCCccCHHHH-------------HHHHhcccccCCCCEEEcCCCC
Confidence 368899999996 66633 33367899999999999987644310 02333 3579999999998
Q ss_pred ccceecCCCcee-cCCCceEEEEcCCCCccccc
Q 036143 273 ELKSVCSDNAVL-ICNSLQEIQITPSCPKLKRL 304 (355)
Q Consensus 273 ~l~~i~~~~~~l-~~~~L~~L~i~~~c~~L~~l 304 (355)
.++.-.. ..+ .+++|++|+++ +|+.+++.
T Consensus 126 ~ITD~Gl--~~L~~~~~L~~L~L~-~c~~Itd~ 155 (176)
T 3e4g_A 126 NVTDKGI--IALHHFRNLKYLFLS-DLPGVKEK 155 (176)
T ss_dssp TCCHHHH--HHGGGCTTCCEEEEE-SCTTCCCH
T ss_pred cCCHHHH--HHHhcCCCCCEEECC-CCCCCCch
Confidence 8765322 111 36799999999 99988764
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=98.01 E-value=1.8e-05 Score=72.92 Aligned_cols=228 Identities=11% Similarity=0.076 Sum_probs=126.8
Q ss_pred CCCCC--ccccccccceecCCCccccccC-cccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchh
Q 036143 2 LERVP--SLAKLLALQCLDLEYTAIKEVP-EGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQ 78 (355)
Q Consensus 2 l~~lP--~i~~l~~L~~L~L~~~~~~~lP-~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~ 78 (355)
++.|+ +|.++ +|+.+.+.. .++.++ ..+.+|.+|+.+++.+|.+..+|.+.|. ..+|+.+.+..+ .......
T Consensus 146 i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~--l~~I~~~ 220 (401)
T 4fdw_A 146 LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT--LKEIGSQ 220 (401)
T ss_dssp CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT--CCEECTT
T ss_pred ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc--hheehhh
Confidence 34455 55553 688888876 677775 4478899999999998889999888755 588999888743 2223333
Q ss_pred HhhcccccccceEEEeccCcccccc-ccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCccCCC
Q 036143 79 EAARSSDRLDTFVGYFSKLDDFNTY-VKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICEREG 157 (355)
Q Consensus 79 ~~l~~L~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~~~ 157 (355)
.+..+++|+.+.+.. +....... +.. ..|+.+..+-++..+......+ ...++...+....+...
T Consensus 221 -aF~~~~~L~~l~l~~-~l~~I~~~aF~~-~~L~~i~lp~~i~~I~~~aF~~---------c~~L~~l~l~~~~~~~~-- 286 (401)
T 4fdw_A 221 -AFLKTSQLKTIEIPE-NVSTIGQEAFRE-SGITTVKLPNGVTNIASRAFYY---------CPELAEVTTYGSTFNDD-- 286 (401)
T ss_dssp -TTTTCTTCCCEECCT-TCCEECTTTTTT-CCCSEEEEETTCCEECTTTTTT---------CTTCCEEEEESSCCCCC--
T ss_pred -HhhCCCCCCEEecCC-CccCcccccccc-CCccEEEeCCCccEEChhHhhC---------CCCCCEEEeCCccccCC--
Confidence 677888888888752 23222222 223 4455555332222221111121 22333444433322210
Q ss_pred ccccCchhHHHHHhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCc
Q 036143 158 VTIVLPKDVQGLIMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNE 237 (355)
Q Consensus 158 ~~~~~~~~L~~Ll~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~ 237 (355)
....++.. ....+++|+.+.+.+ .++.+.. ..+.++++|+.+.+.. .+.
T Consensus 287 ------------------~~~~I~~~--------aF~~c~~L~~l~l~~--~i~~I~~-~aF~~c~~L~~l~lp~--~l~ 335 (401)
T 4fdw_A 287 ------------------PEAMIHPY--------CLEGCPKLARFEIPE--SIRILGQ-GLLGGNRKVTQLTIPA--NVT 335 (401)
T ss_dssp ------------------TTCEECTT--------TTTTCTTCCEECCCT--TCCEECT-TTTTTCCSCCEEEECT--TCC
T ss_pred ------------------cccEECHH--------HhhCCccCCeEEeCC--ceEEEhh-hhhcCCCCccEEEECc--ccc
Confidence 01111110 013566788877763 3555433 3367788889888853 355
Q ss_pred eecccCcchhhhhcccccccccCcccceeecccccccceecCCC-ceecCCCceEEEEc
Q 036143 238 EIVEVNDEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDN-AVLICNSLQEIQIT 295 (355)
Q Consensus 238 ~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~-~~l~~~~L~~L~i~ 295 (355)
.+-. ..+..+ +|+.+.+.+. .+..+.... ..++ .+++.|++-
T Consensus 336 ~I~~-------------~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~-~~l~~l~vp 378 (401)
T 4fdw_A 336 QINF-------------SAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFP-DDITVIRVP 378 (401)
T ss_dssp EECT-------------TSSSSS-CCCEEEECCS-SCCBCCCSSCCCSC-TTCCEEEEC
T ss_pred EEcH-------------HhCCCC-CCCEEEEcCC-CCcccccccccCCC-CCccEEEeC
Confidence 5532 145566 8999988875 344443321 2221 267777773
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.99 E-value=1.3e-05 Score=72.74 Aligned_cols=66 Identities=12% Similarity=0.048 Sum_probs=37.2
Q ss_pred ccCcccccCcccceecccCcccc----------cccchhhhcCCCcceeeecccCCccccchhHhhcccccccceEEEec
Q 036143 26 EVPEGMEMLENLVHLTIYSKMLI----------KFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLDTFVGYFS 95 (355)
Q Consensus 26 ~lP~~i~~L~~L~~L~l~~~~~~----------~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L~l~~~ 95 (355)
.+++++.++++|+.|.+.+.... .++.- +..+++|+.|+++++.. ..++ .+ .+++|++|.+..+
T Consensus 130 ~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~l-l~~~P~L~~L~L~g~~~---l~l~-~~-~~~~L~~L~L~~~ 203 (362)
T 2ra8_A 130 GIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPV-LDAMPLLNNLKIKGTNN---LSIG-KK-PRPNLKSLEIISG 203 (362)
T ss_dssp HHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHH-HHTCTTCCEEEEECCBT---CBCC-SC-BCTTCSEEEEECS
T ss_pred HHHHhhhhcchhhheeecCcchhhcccccccccCHHHH-HhcCCCCcEEEEeCCCC---ceec-cc-cCCCCcEEEEecC
Confidence 34555666777777777543211 12222 36677888888876421 2233 23 3677888887655
Q ss_pred cC
Q 036143 96 KL 97 (355)
Q Consensus 96 ~~ 97 (355)
..
T Consensus 204 ~l 205 (362)
T 2ra8_A 204 GL 205 (362)
T ss_dssp BC
T ss_pred CC
Confidence 44
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.94 E-value=6e-05 Score=69.25 Aligned_cols=59 Identities=14% Similarity=0.107 Sum_probs=43.9
Q ss_pred ccccccccceecCCCccccccCcc-cccCcccceecccCcccccccchhhhcCCCcceeeec
Q 036143 7 SLAKLLALQCLDLEYTAIKEVPEG-MEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLN 67 (355)
Q Consensus 7 ~i~~l~~L~~L~L~~~~~~~lP~~-i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~ 67 (355)
+|.++++|+.+.+.. +++.+++. +.+|.+|+.+++..+ ++.++...|..+.+|+.+.+.
T Consensus 66 AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p 125 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLP 125 (394)
T ss_dssp TTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred HhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhccc
Confidence 567788899998864 47777544 678899999999764 667776666777777776654
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.90 E-value=2e-06 Score=78.53 Aligned_cols=12 Identities=25% Similarity=0.166 Sum_probs=6.2
Q ss_pred cCCCCeEEEecC
Q 036143 222 LQNLEFLVVQSC 233 (355)
Q Consensus 222 L~~L~~L~l~~~ 233 (355)
.++|++|+++++
T Consensus 238 ~~~L~~L~Ls~N 249 (372)
T 3un9_A 238 HPSLELLHLYFN 249 (372)
T ss_dssp CSSCCEEECTTS
T ss_pred CCCCCEEeccCC
Confidence 355555555544
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.85 E-value=1.6e-05 Score=71.19 Aligned_cols=100 Identities=14% Similarity=0.136 Sum_probs=73.4
Q ss_pred ccccceecCCCccccccCcc-cccCcccceecccCcccccccchhhhcCCCcc-eeeecccCCccccchhHhhccccccc
Q 036143 11 LLALQCLDLEYTAIKEVPEG-MEMLENLVHLTIYSKMLIKFPAGILPKLCNLY-SLRLNWGSETSRETVQEAARSSDRLD 88 (355)
Q Consensus 11 l~~L~~L~L~~~~~~~lP~~-i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~-~L~l~~~~~~~~~~~~~~l~~L~~L~ 88 (355)
+.+|+.+++++|+++.+|.. +.+|.+|+.+++.++ ++.++...|..+.+|+ .+++... ....... .+..+++|+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~~--l~~I~~~-aF~~c~~L~ 300 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPAS--VTAIEFG-AFMGCDNLR 300 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECTT--CCEECTT-TTTTCTTEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEccc--ceEEchh-hhhCCccCC
Confidence 77899999998888888765 688889999999887 8888888778899998 8888762 2223333 788888888
Q ss_pred ceEEEeccCccccc-cccccccccccc
Q 036143 89 TFVGYFSKLDDFNT-YVKSSDGQRSKH 114 (355)
Q Consensus 89 ~L~l~~~~~~~~~~-~~~~l~~L~~L~ 114 (355)
++.+..+....... .+..+..|+.+.
T Consensus 301 ~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 301 YVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EEEeCCCccCccchhhhcCCcchhhhc
Confidence 88886565555442 355666665543
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=97.83 E-value=9.5e-06 Score=70.16 Aligned_cols=83 Identities=17% Similarity=0.122 Sum_probs=47.8
Q ss_pred ccccce--ecCCCccccccCccc----ccCcccceecccCccccccc---chhhhcCCCcceeeecccCCccccchhHhh
Q 036143 11 LLALQC--LDLEYTAIKEVPEGM----EMLENLVHLTIYSKMLIKFP---AGILPKLCNLYSLRLNWGSETSRETVQEAA 81 (355)
Q Consensus 11 l~~L~~--L~L~~~~~~~lP~~i----~~L~~L~~L~l~~~~~~~lP---~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l 81 (355)
...|+. ++++.|....++..+ .++++|+.|++++|.+..++ ..+ +++++|++|+++++..... . .+
T Consensus 140 dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~-~~l~~L~~L~Ls~N~i~~~---~-~l 214 (267)
T 3rw6_A 140 DPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIV-QKAPNLKILNLSGNELKSE---R-EL 214 (267)
T ss_dssp CHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHH-HHSTTCCEEECTTSCCCSG---G-GG
T ss_pred CcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHH-hhCCCCCEEECCCCccCCc---h-hh
Confidence 334444 555666444443322 45677777777777666543 334 6777777777777554222 2 33
Q ss_pred cccc--cccceEEEeccCc
Q 036143 82 RSSD--RLDTFVGYFSKLD 98 (355)
Q Consensus 82 ~~L~--~L~~L~l~~~~~~ 98 (355)
..+. +|++|.+.+|...
T Consensus 215 ~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 215 DKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp GGGTTSCCSEEECTTSTTG
T ss_pred hhcccCCcceEEccCCcCc
Confidence 3344 7777777665543
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=97.25 E-value=7.8e-05 Score=64.40 Aligned_cols=81 Identities=17% Similarity=0.132 Sum_probs=58.0
Q ss_pred cccccceecCCCcccccc---CcccccCcccceecccCcccccccchhhhcCC--CcceeeecccCCccccc-----hhH
Q 036143 10 KLLALQCLDLEYTAIKEV---PEGMEMLENLVHLTIYSKMLIKFPAGILPKLC--NLYSLRLNWGSETSRET-----VQE 79 (355)
Q Consensus 10 ~l~~L~~L~L~~~~~~~l---P~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~--~L~~L~l~~~~~~~~~~-----~~~ 79 (355)
++.+|++|+|++|.++.+ |..++.+++|++|+|++|.+..+ .++ ..+. +|++|++.++....... ...
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l-~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-REL-DKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGG-GGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhh-hhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 477899999999977754 46677899999999999988877 334 5666 89999999875432110 111
Q ss_pred hhcccccccceEE
Q 036143 80 AARSSDRLDTFVG 92 (355)
Q Consensus 80 ~l~~L~~L~~L~l 92 (355)
.+..+++|+.|+.
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 4667777777653
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.18 E-value=7.1e-05 Score=61.08 Aligned_cols=89 Identities=16% Similarity=0.048 Sum_probs=60.2
Q ss_pred cccccccceecCCCc-ccc-----ccCcccccCcccceecccCccccc-----ccchhhhcCCCcceeeecccCCccccc
Q 036143 8 LAKLLALQCLDLEYT-AIK-----EVPEGMEMLENLVHLTIYSKMLIK-----FPAGILPKLCNLYSLRLNWGSETSRET 76 (355)
Q Consensus 8 i~~l~~L~~L~L~~~-~~~-----~lP~~i~~L~~L~~L~l~~~~~~~-----lP~~i~~~L~~L~~L~l~~~~~~~~~~ 76 (355)
+....+|++|+|++| .+. .+...+....+|++|++++|.+.. +...+ ...++|++|++++|.. ....
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L-~~n~~L~~L~L~~N~i-~~~g 109 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEML-KVNNTLKSLNVESNFI-SGSG 109 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHH-HHCSSCCEEECCSSCC-CHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHH-HhCCCcCEEECcCCcC-CHHH
Confidence 345678889999888 664 355566677889999999887654 33334 6678889999988653 2222
Q ss_pred ---hhHhhcccccccceEE--EeccCc
Q 036143 77 ---VQEAARSSDRLDTFVG--YFSKLD 98 (355)
Q Consensus 77 ---~~~~l~~L~~L~~L~l--~~~~~~ 98 (355)
+...+...++|++|++ .++.+.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 2225666778888888 555543
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.16 E-value=9e-05 Score=67.55 Aligned_cols=103 Identities=12% Similarity=0.105 Sum_probs=71.1
Q ss_pred cccccceecCCCcccccc-Cccc-----ccCcccceecccCccccc-----ccchhhhcCCCcceeeecccCCccccc--
Q 036143 10 KLLALQCLDLEYTAIKEV-PEGM-----EMLENLVHLTIYSKMLIK-----FPAGILPKLCNLYSLRLNWGSETSRET-- 76 (355)
Q Consensus 10 ~l~~L~~L~L~~~~~~~l-P~~i-----~~L~~L~~L~l~~~~~~~-----lP~~i~~~L~~L~~L~l~~~~~~~~~~-- 76 (355)
.+.+|++|+|++|.++.. ...+ ....+|++|++++|.+.. ++..+ ..+++|++|++++|.. ....
T Consensus 124 ~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L-~~~~~L~~L~Ls~N~l-~~~g~~ 201 (372)
T 3un9_A 124 VFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL-AGNTSVTHLSLLHTGL-GDEGLE 201 (372)
T ss_dssp HHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH-HTCSSCCEEECTTSSC-HHHHHH
T ss_pred HHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH-hcCCCcCEEeCCCCCC-CcHHHH
Confidence 467899999999988632 2222 246789999999998765 44444 7889999999998754 2222
Q ss_pred -hhHhhcccccccceEEEeccCccc-----cccccccccccccc
Q 036143 77 -VQEAARSSDRLDTFVGYFSKLDDF-----NTYVKSSDGQRSKH 114 (355)
Q Consensus 77 -~~~~l~~L~~L~~L~l~~~~~~~~-----~~~~~~l~~L~~L~ 114 (355)
+...+...++|++|++..|.+.+. ...+...+.|+.|+
T Consensus 202 ~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~ 245 (372)
T 3un9_A 202 LLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLH 245 (372)
T ss_dssp HHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEE
T ss_pred HHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEe
Confidence 222667788999999988776542 22334456677776
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.01 Score=54.12 Aligned_cols=100 Identities=14% Similarity=0.201 Sum_probs=49.6
Q ss_pred cCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCceecccCcchhhhhcccccccccCcccceeeccccccc
Q 036143 195 KFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPEL 274 (355)
Q Consensus 195 ~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 274 (355)
.+.+|+.+.+.+. +..+ ....+.++++|+.+.+. ..+..+.. ..+..+.+|+.+.+-+ .+
T Consensus 263 ~c~~L~~i~lp~~--~~~I-~~~aF~~c~~L~~i~l~--~~i~~I~~-------------~aF~~c~~L~~i~lp~--~v 322 (394)
T 4gt6_A 263 SCAYLASVKMPDS--VVSI-GTGAFMNCPALQDIEFS--SRITELPE-------------SVFAGCISLKSIDIPE--GI 322 (394)
T ss_dssp TCSSCCEEECCTT--CCEE-CTTTTTTCTTCCEEECC--TTCCEECT-------------TTTTTCTTCCEEECCT--TC
T ss_pred ecccccEEecccc--ccee-cCcccccccccccccCC--CcccccCc-------------eeecCCCCcCEEEeCC--cc
Confidence 3455666555332 1221 11224556667766664 23444422 1444566777777643 35
Q ss_pred ceecCCCceec-CCCceEEEEcCCCCccccccCC-CCCCCCCCCCCCCCeeEEEe
Q 036143 275 KSVCSDNAVLI-CNSLQEIQITPSCPKLKRLSLR-LPPLDNGQPSPSPALEVIKI 327 (355)
Q Consensus 275 ~~i~~~~~~l~-~~~L~~L~i~~~c~~L~~lp~~-~~~l~~~~~~~~~~L~~l~~ 327 (355)
+.|.. .++. +.+|+.+.+- ..++.+..+ ....+ +|+.|++
T Consensus 323 ~~I~~--~aF~~C~~L~~i~ip---~sv~~I~~~aF~~C~--------~L~~i~~ 364 (394)
T 4gt6_A 323 TQILD--DAFAGCEQLERIAIP---SSVTKIPESAFSNCT--------ALNNIEY 364 (394)
T ss_dssp CEECT--TTTTTCTTCCEEEEC---TTCCBCCGGGGTTCT--------TCCEEEE
T ss_pred cEehH--hHhhCCCCCCEEEEC---cccCEEhHhHhhCCC--------CCCEEEE
Confidence 55644 4443 4566666663 234444322 23333 6777776
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00015 Score=59.14 Aligned_cols=88 Identities=14% Similarity=0.130 Sum_probs=64.4
Q ss_pred cccccccceecCCCccccc-----cCcccccCcccceecccCccccc-----ccchhhhcCCCcceeee--cccCCcccc
Q 036143 8 LAKLLALQCLDLEYTAIKE-----VPEGMEMLENLVHLTIYSKMLIK-----FPAGILPKLCNLYSLRL--NWGSETSRE 75 (355)
Q Consensus 8 i~~l~~L~~L~L~~~~~~~-----lP~~i~~L~~L~~L~l~~~~~~~-----lP~~i~~~L~~L~~L~l--~~~~~~~~~ 75 (355)
+...++|++|+|++|.+.. +...+....+|++|++++|.+.. +...+ ...++|++|++ +++.. +..
T Consensus 61 L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L-~~n~~L~~L~L~~~~N~i-~~~ 138 (185)
T 1io0_A 61 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEAL-QSNTSLIELRIDNQSQPL-GNN 138 (185)
T ss_dssp HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGG-GGCSSCCEEECCCCSSCC-CHH
T ss_pred HHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHH-HhCCCceEEEecCCCCCC-CHH
Confidence 4456889999999998753 55566677899999999998775 44455 88899999999 65543 333
Q ss_pred ch---hHhhcccccccceEEEeccC
Q 036143 76 TV---QEAARSSDRLDTFVGYFSKL 97 (355)
Q Consensus 76 ~~---~~~l~~L~~L~~L~l~~~~~ 97 (355)
.. ...+...++|++|++.++.+
T Consensus 139 g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 139 VEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHHhCCCcCEEeccCCCC
Confidence 32 22556668899999976654
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0018 Score=49.32 Aligned_cols=55 Identities=18% Similarity=0.273 Sum_probs=47.3
Q ss_pred ceecCCCcccc--ccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCC
Q 036143 15 QCLDLEYTAIK--EVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSE 71 (355)
Q Consensus 15 ~~L~L~~~~~~--~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~ 71 (355)
.+++.++++++ .+|..+. .+|++|+|++|.+..+|.++|..+++|++|++.++..
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 57888888888 8997654 3699999999999999999889999999999998654
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.037 Score=50.44 Aligned_cols=93 Identities=12% Similarity=0.162 Sum_probs=55.0
Q ss_pred cCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCceecccCcchhhhhcccccccccCcccceeeccccccc
Q 036143 195 KFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPEL 274 (355)
Q Consensus 195 ~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 274 (355)
.+.+|+.+.+.+ .++.+.. ..+.++++|+.+++.+ .++.+-. .++..+.+|+.+.+.. .+
T Consensus 295 ~~~~L~~i~l~~--~i~~I~~-~aF~~c~~L~~i~lp~--~v~~I~~-------------~aF~~c~~L~~i~lp~--~l 354 (394)
T 4fs7_A 295 GCSSLTEVKLLD--SVKFIGE-EAFESCTSLVSIDLPY--LVEEIGK-------------RSFRGCTSLSNINFPL--SL 354 (394)
T ss_dssp TCTTCCEEEECT--TCCEECT-TTTTTCTTCCEECCCT--TCCEECT-------------TTTTTCTTCCEECCCT--TC
T ss_pred cccccccccccc--ccceech-hhhcCCCCCCEEEeCC--cccEEhH-------------HhccCCCCCCEEEECc--cc
Confidence 566777777753 3444332 2366788888888752 3445421 1555677888888854 36
Q ss_pred ceecCCCceec-CCCceEEEEcCCCCccccccCCCCCCC
Q 036143 275 KSVCSDNAVLI-CNSLQEIQITPSCPKLKRLSLRLPPLD 312 (355)
Q Consensus 275 ~~i~~~~~~l~-~~~L~~L~i~~~c~~L~~lp~~~~~l~ 312 (355)
+.|.. +++. +++|+.+.+. ..++.+.......+
T Consensus 355 ~~I~~--~aF~~C~~L~~i~lp---~~~~~~~~~F~~c~ 388 (394)
T 4fs7_A 355 RKIGA--NAFQGCINLKKVELP---KRLEQYRYDFEDTT 388 (394)
T ss_dssp CEECT--TTBTTCTTCCEEEEE---GGGGGGGGGBCTTC
T ss_pred cEehH--HHhhCCCCCCEEEEC---CCCEEhhheecCCC
Confidence 77755 5654 6788888885 23444443343333
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0022 Score=57.96 Aligned_cols=83 Identities=17% Similarity=0.133 Sum_probs=55.7
Q ss_pred ccccccccceecCCCcccc----------ccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccc
Q 036143 7 SLAKLLALQCLDLEYTAIK----------EVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRET 76 (355)
Q Consensus 7 ~i~~l~~L~~L~L~~~~~~----------~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~ 76 (355)
++..+.+|+.|.+.+.... .++.-+..+++|+.|++++|....+|. + .+++|++|++..+.. ....
T Consensus 134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~--~~~~L~~L~L~~~~l-~~~~ 209 (362)
T 2ra8_A 134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K--PRPNLKSLEIISGGL-PDSV 209 (362)
T ss_dssp THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C--BCTTCSEEEEECSBC-CHHH
T ss_pred hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c--cCCCCcEEEEecCCC-ChHH
Confidence 4667888888888654221 233444677899999998884334554 4 388999999986543 3344
Q ss_pred hhHhhc--ccccccceEEEe
Q 036143 77 VQEAAR--SSDRLDTFVGYF 94 (355)
Q Consensus 77 ~~~~l~--~L~~L~~L~l~~ 94 (355)
+. .+. .+++|++|.++.
T Consensus 210 l~-~l~~~~lp~L~~L~L~~ 228 (362)
T 2ra8_A 210 VE-DILGSDLPNLEKLVLYV 228 (362)
T ss_dssp HH-HHHHSBCTTCCEEEEEC
T ss_pred HH-HHHHccCCCCcEEEEec
Confidence 44 444 788999998863
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.016 Score=43.97 Aligned_cols=43 Identities=16% Similarity=0.236 Sum_probs=35.6
Q ss_pred CCC-ccccccccceecCCCccccccCcc-cccCcccceecccCcccc
Q 036143 4 RVP-SLAKLLALQCLDLEYTAIKEVPEG-MEMLENLVHLTIYSKMLI 48 (355)
Q Consensus 4 ~lP-~i~~l~~L~~L~L~~~~~~~lP~~-i~~L~~L~~L~l~~~~~~ 48 (355)
.+| .+ -.+|++|+|++|.++.+|.. +..+.+|++|+|++|...
T Consensus 24 ~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 24 SLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred cCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 677 44 34799999999999999877 578999999999998543
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=92.38 E-value=0.25 Score=44.49 Aligned_cols=35 Identities=17% Similarity=0.225 Sum_probs=16.4
Q ss_pred ccCcccceecccCcccccccchhhhcCCCcceeeec
Q 036143 32 EMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLN 67 (355)
Q Consensus 32 ~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~ 67 (355)
.++.+|+.+.+.. .+..++...|..+++|+.+.+.
T Consensus 260 ~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~ 294 (379)
T 4h09_A 260 QNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMD 294 (379)
T ss_dssp TTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEEC
T ss_pred ceeehhccccccc-cceecccccccccccccccccc
Confidence 3444444444433 2444444444555555555554
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=92.01 E-value=0.14 Score=46.19 Aligned_cols=82 Identities=20% Similarity=0.159 Sum_probs=58.4
Q ss_pred ccccccccceecCCCccccccCcc-cccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccc
Q 036143 7 SLAKLLALQCLDLEYTAIKEVPEG-MEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSD 85 (355)
Q Consensus 7 ~i~~l~~L~~L~L~~~~~~~lP~~-i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~ 85 (355)
.+.++.+|+.+.+.. ++..++.. +..+.+|+.+.+.++.++.++...|.++.+|+.+.+... .....-. .+.+++
T Consensus 258 aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~-aF~~C~ 333 (379)
T 4h09_A 258 LLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA--LKTIQVY-AFKNCK 333 (379)
T ss_dssp TTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTT-TTTTCT
T ss_pred ccceeehhccccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc--ccEEHHH-HhhCCC
Confidence 444566666666643 35555443 578999999999998899998887899999999999743 2222223 577778
Q ss_pred cccceEE
Q 036143 86 RLDTFVG 92 (355)
Q Consensus 86 ~L~~L~l 92 (355)
+|+.+.+
T Consensus 334 ~L~~i~i 340 (379)
T 4h09_A 334 ALSTISY 340 (379)
T ss_dssp TCCCCCC
T ss_pred CCCEEEE
Confidence 8887766
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=90.88 E-value=0.42 Score=43.27 Aligned_cols=80 Identities=11% Similarity=0.166 Sum_probs=42.0
Q ss_pred cccccccceecCCCcccccc-CcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhccccc
Q 036143 8 LAKLLALQCLDLEYTAIKEV-PEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDR 86 (355)
Q Consensus 8 i~~l~~L~~L~L~~~~~~~l-P~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 86 (355)
+.++.+|+.+.+..+ +..+ ...+.++.+|+.+.+.. .+..++...|..+.+|+.+++... .....-. .+..+++
T Consensus 261 F~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~-aF~~C~~ 335 (394)
T 4gt6_A 261 FDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG--ITQILDD-AFAGCEQ 335 (394)
T ss_dssp TTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT--CCEECTT-TTTTCTT
T ss_pred eeecccccEEecccc-cceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc--ccEehHh-HhhCCCC
Confidence 444555555555443 2223 22345566666666643 455566665566666766666532 1112222 4556666
Q ss_pred ccceEE
Q 036143 87 LDTFVG 92 (355)
Q Consensus 87 L~~L~l 92 (355)
|+.+.+
T Consensus 336 L~~i~i 341 (394)
T 4gt6_A 336 LERIAI 341 (394)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 666666
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 355 | |||
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.69 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.64 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.63 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.61 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.59 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.57 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.56 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.53 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.53 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.52 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.45 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.44 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.41 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.39 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.39 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.38 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.38 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.37 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.32 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.32 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.25 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.24 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.22 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.22 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.19 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.05 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.02 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 98.98 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.84 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 98.8 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.71 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.59 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 98.06 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 97.85 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 97.74 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 97.66 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 96.8 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 96.72 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 94.74 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 93.64 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 92.7 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 90.0 |
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.69 E-value=2.3e-16 Score=143.06 Aligned_cols=80 Identities=16% Similarity=0.282 Sum_probs=49.8
Q ss_pred HhhcCCCCeEEEecCCCCceecccCcchhhhhcccccccccCcccceeecccccccceecCCCceecCCCceEEEEcCCC
Q 036143 219 LAALQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAVLICNSLQEIQITPSC 298 (355)
Q Consensus 219 l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~~~L~~L~i~~~c 298 (355)
+..+++++.|+++++ .+..+. .+..+|+|++|++++| .++.+.. .-.+++|++|+++ +|
T Consensus 303 ~~~~~~l~~L~ls~n-~l~~l~---------------~l~~l~~L~~L~L~~n-~l~~l~~---l~~l~~L~~L~l~-~N 361 (384)
T d2omza2 303 ISNLKNLTYLTLYFN-NISDIS---------------PVSSLTKLQRLFFANN-KVSDVSS---LANLTNINWLSAG-HN 361 (384)
T ss_dssp GGGCTTCSEEECCSS-CCSCCG---------------GGGGCTTCCEEECCSS-CCCCCGG---GGGCTTCCEEECC-SS
T ss_pred cchhcccCeEECCCC-CCCCCc---------------ccccCCCCCEEECCCC-CCCCChh---HcCCCCCCEEECC-CC
Confidence 345566666666644 333332 4567888888888887 4555532 1225688888885 44
Q ss_pred CccccccCCCCCCCCCCCCCCCCeeEEEehh
Q 036143 299 PKLKRLSLRLPPLDNGQPSPSPALEVIKIRK 329 (355)
Q Consensus 299 ~~L~~lp~~~~~l~~~~~~~~~~L~~l~~~~ 329 (355)
++..++. +..++ +|+.|++.+
T Consensus 362 -~l~~l~~-l~~l~--------~L~~L~L~~ 382 (384)
T d2omza2 362 -QISDLTP-LANLT--------RITQLGLND 382 (384)
T ss_dssp -CCCBCGG-GTTCT--------TCSEEECCC
T ss_pred -cCCCChh-hccCC--------CCCEeeCCC
Confidence 6777763 54444 888887744
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.64 E-value=4.7e-17 Score=144.04 Aligned_cols=250 Identities=14% Similarity=0.041 Sum_probs=123.5
Q ss_pred ccceecCCCcccc---ccCcccccCcccceecccC-cccc-cccchhhhcCCCcceeeecccCCccccchhHhhcccccc
Q 036143 13 ALQCLDLEYTAIK---EVPEGMEMLENLVHLTIYS-KMLI-KFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRL 87 (355)
Q Consensus 13 ~L~~L~L~~~~~~---~lP~~i~~L~~L~~L~l~~-~~~~-~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L 87 (355)
+++.|+|+++++. .+|+++++|++|++|++++ |.+. .+|.++ ++|++|++|+++++.. .+.... .+..+.+|
T Consensus 51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i-~~L~~L~~L~Ls~N~l-~~~~~~-~~~~~~~L 127 (313)
T d1ogqa_ 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNV-SGAIPD-FLSQIKTL 127 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECC-EEECCG-GGGGCTTC
T ss_pred EEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccccccccc-ccccccchhhhccccc-cccccc-cccchhhh
Confidence 4566666666544 4566666666666666665 3444 566666 6666666666666533 222222 45566666
Q ss_pred cceEEEeccCcc-ccccccccccccccccccccceeEeecCCCccccceeccc-CCccEEEEeccCCccCCCccccCchh
Q 036143 88 DTFVGYFSKLDD-FNTYVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTR-EANKSVCFYGCKICEREGVTIVLPKD 165 (355)
Q Consensus 88 ~~L~l~~~~~~~-~~~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~L~~l~~~~~~~~~~~~~~~ 165 (355)
+++++..+.... .+..++.++.++.+....+ .+.+. .+..+... .......+....+.+.....+..+..
T Consensus 128 ~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n-------~l~~~-ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~ 199 (313)
T d1ogqa_ 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGN-------RISGA-IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL 199 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSS-------CCEEE-CCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC
T ss_pred cccccccccccccCchhhccCcccceeecccc-------ccccc-ccccccccccccccccccccccccccccccccccc
Confidence 666665444332 2234555555554441111 00000 11111111 11223333333332211110000000
Q ss_pred HHHH-HhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCceecccCc
Q 036143 166 VQGL-IMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVND 244 (355)
Q Consensus 166 L~~L-l~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~~~~~ 244 (355)
. .+ +..+ ... ...+. ..+.+++++.+.++++. +....+ .+..+++|+.|+++++.-...++.
T Consensus 200 ~-~l~l~~~-~~~---~~~~~------~~~~~~~l~~l~~~~~~-l~~~~~--~~~~~~~L~~L~Ls~N~l~g~iP~--- 262 (313)
T d1ogqa_ 200 A-FVDLSRN-MLE---GDASV------LFGSDKNTQKIHLAKNS-LAFDLG--KVGLSKNLNGLDLRNNRIYGTLPQ--- 262 (313)
T ss_dssp S-EEECCSS-EEE---ECCGG------GCCTTSCCSEEECCSSE-ECCBGG--GCCCCTTCCEEECCSSCCEECCCG---
T ss_pred c-ccccccc-ccc---ccccc------ccccccccccccccccc-cccccc--ccccccccccccCccCeecccCCh---
Confidence 0 00 1111 000 01111 11456778888887773 333222 256678888888887665556665
Q ss_pred chhhhhcccccccccCcccceeecccccccceecCCCceecCCCceEEEEcCCCCcccccc
Q 036143 245 EETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAVLICNSLQEIQITPSCPKLKRLS 305 (355)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~~~L~~L~i~~~c~~L~~lp 305 (355)
.++.+++|++|+|+++.--+.++.. +. +++|+.+.+. +.+.+...|
T Consensus 263 -----------~l~~L~~L~~L~Ls~N~l~g~iP~~-~~--L~~L~~l~l~-~N~~l~g~p 308 (313)
T d1ogqa_ 263 -----------GLTQLKFLHSLNVSFNNLCGEIPQG-GN--LQRFDVSAYA-NNKCLCGSP 308 (313)
T ss_dssp -----------GGGGCTTCCEEECCSSEEEEECCCS-TT--GGGSCGGGTC-SSSEEESTT
T ss_pred -----------HHhCCCCCCEEECcCCcccccCCCc-cc--CCCCCHHHhC-CCccccCCC
Confidence 6778888888888887543466541 22 3477777777 666666554
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.63 E-value=8.5e-15 Score=128.74 Aligned_cols=118 Identities=13% Similarity=0.037 Sum_probs=78.0
Q ss_pred ccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCceecccCcchhhhhcccccccccCcccceeecccccc
Q 036143 194 AKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVNDEETQKELGISAITITLPRLKKLWLSFLPE 273 (355)
Q Consensus 194 ~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 273 (355)
..+++|++|+++++...... + ..+..++.+++|.++++ .+..+.. ..+..+++|++|+++++ .
T Consensus 168 ~~~~~L~~L~l~~n~~~~~~-~-~~~~~~~~l~~L~~s~n-~l~~~~~-------------~~~~~l~~L~~L~L~~N-~ 230 (305)
T d1xkua_ 168 GLPPSLTELHLDGNKITKVD-A-ASLKGLNNLAKLGLSFN-SISAVDN-------------GSLANTPHLRELHLNNN-K 230 (305)
T ss_dssp SCCTTCSEEECTTSCCCEEC-T-GGGTTCTTCCEEECCSS-CCCEECT-------------TTGGGSTTCCEEECCSS-C
T ss_pred ccCCccCEEECCCCcCCCCC-h-hHhhccccccccccccc-ccccccc-------------ccccccccceeeecccc-c
Confidence 45778999999888544442 2 23677889999998875 4555532 15567899999999998 5
Q ss_pred cceecCCCceecCCCceEEEEcCCCCccccccCCCCCCCCCCCCCCCCeeEEEehhhhhc
Q 036143 274 LKSVCSDNAVLICNSLQEIQITPSCPKLKRLSLRLPPLDNGQPSPSPALEVIKIRKELWE 333 (355)
Q Consensus 274 l~~i~~~~~~l~~~~L~~L~i~~~c~~L~~lp~~~~~l~~~~~~~~~~L~~l~~~~~~~~ 333 (355)
++.++. +-..+++|++|++. ++ +++.++...-.. .+-...+++|+.+++..+-|+
T Consensus 231 L~~lp~--~l~~l~~L~~L~Ls-~N-~i~~i~~~~f~~-~~~~~~~~~L~~L~L~~N~~~ 285 (305)
T d1xkua_ 231 LVKVPG--GLADHKYIQVVYLH-NN-NISAIGSNDFCP-PGYNTKKASYSGVSLFSNPVQ 285 (305)
T ss_dssp CSSCCT--TTTTCSSCCEEECC-SS-CCCCCCTTSSSC-SSCCTTSCCCSEEECCSSSSC
T ss_pred cccccc--ccccccCCCEEECC-CC-ccCccChhhccC-cchhcccCCCCEEECCCCcCc
Confidence 777765 33346799999997 65 688886432110 000133558889988655443
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.61 E-value=3.4e-15 Score=135.21 Aligned_cols=287 Identities=15% Similarity=0.177 Sum_probs=159.4
Q ss_pred cccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccccc
Q 036143 8 LAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRL 87 (355)
Q Consensus 8 i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L 87 (355)
..++.+|++|++++++++.+ ++++.|++|++|++++|.++.+|. + +++++|++|+++++.. ..++ .++.+++|
T Consensus 40 ~~~l~~l~~L~l~~~~I~~l-~gl~~L~nL~~L~Ls~N~l~~l~~-l-~~L~~L~~L~L~~n~i---~~i~-~l~~l~~L 112 (384)
T d2omza2 40 QTDLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDITP-L-KNLTKLVDILMNNNQI---ADIT-PLANLTNL 112 (384)
T ss_dssp HHHHTTCCEEECCSSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG-G-TTCTTCCEEECCSSCC---CCCG-GGTTCTTC
T ss_pred HHHhCCCCEEECCCCCCCCc-cccccCCCCCEEeCcCCcCCCCcc-c-cCCccccccccccccc---cccc-cccccccc
Confidence 34577899999999988887 478889999999999999988875 5 8999999999988754 3445 68888899
Q ss_pred cceEEEeccCccccccccc--cc-------cccccccccc---c--------------------ceeEeecCCCccccce
Q 036143 88 DTFVGYFSKLDDFNTYVKS--SD-------GQRSKHFHFQ---V--------------------STVYNGSAANTRFYSF 135 (355)
Q Consensus 88 ~~L~l~~~~~~~~~~~~~~--l~-------~L~~L~~~~~---~--------------------~~~~~~~~~~~~~~~~ 135 (355)
+.+++..+...+....... .. .+..+..... . ................
T Consensus 113 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (384)
T d2omza2 113 TGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV 192 (384)
T ss_dssp CEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGG
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccc
Confidence 9888765444332111000 00 0000000000 0 0000000000001111
Q ss_pred ecccCCccEEEEeccCCccCCCccccCchhHHHH-HhhcccccccccccccccccccccccCCCccEEeeccCCCccccc
Q 036143 136 LRTREANKSVCFYGCKICEREGVTIVLPKDVQGL-IMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLF 214 (355)
Q Consensus 136 l~~~~~~~~~~L~~l~~~~~~~~~~~~~~~L~~L-l~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 214 (355)
...........+..+.+....+. ..++.++.+ +.++ .++.++.+ ..+++|+.|+++++ .++.+.
T Consensus 193 ~~~l~~~~~l~l~~n~i~~~~~~--~~~~~L~~L~l~~n--~l~~~~~l----------~~l~~L~~L~l~~n-~l~~~~ 257 (384)
T d2omza2 193 LAKLTNLESLIATNNQISDITPL--GILTNLDELSLNGN--QLKDIGTL----------ASLTNLTDLDLANN-QISNLA 257 (384)
T ss_dssp GGGCTTCSEEECCSSCCCCCGGG--GGCTTCCEEECCSS--CCCCCGGG----------GGCTTCSEEECCSS-CCCCCG
T ss_pred cccccccceeeccCCccCCCCcc--cccCCCCEEECCCC--CCCCcchh----------hcccccchhccccC-ccCCCC
Confidence 11223344555555555443222 333455555 5543 22222211 35677777777777 355443
Q ss_pred hHHHHhhcCCCCeEEEecCCCCceecccCcchhh-------hhcccccccccCcccceeecccccccceecCCCceecCC
Q 036143 215 SLQLLAALQNLEFLVVQSCNRNEEIVEVNDEETQ-------KELGISAITITLPRLKKLWLSFLPELKSVCSDNAVLICN 287 (355)
Q Consensus 215 ~~~~l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~-------~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~~ 287 (355)
+ +..+++|+.|+++++.. ..+......... ...+.......++++++|+++++ .+..+.. .-.++
T Consensus 258 ~---~~~~~~L~~L~l~~~~l-~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n-~l~~l~~---l~~l~ 329 (384)
T d2omza2 258 P---LSGLTKLTELKLGANQI-SNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN-NISDISP---VSSLT 329 (384)
T ss_dssp G---GTTCTTCSEEECCSSCC-CCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSS-CCSCCGG---GGGCT
T ss_pred c---ccccccCCEeeccCccc-CCCCccccccccccccccccccccccccchhcccCeEECCCC-CCCCCcc---cccCC
Confidence 3 45677777777764432 111110000000 00111124567789999999887 4555432 22367
Q ss_pred CceEEEEcCCCCccccccCCCCCCCCCCCCCCCCeeEEEehhhhhccc
Q 036143 288 SLQEIQITPSCPKLKRLSLRLPPLDNGQPSPSPALEVIKIRKELWESL 335 (355)
Q Consensus 288 ~L~~L~i~~~c~~L~~lp~~~~~l~~~~~~~~~~L~~l~~~~~~~~~l 335 (355)
+|++|++. +| +++.+| .+..++ +|+.+++..+....+
T Consensus 330 ~L~~L~L~-~n-~l~~l~-~l~~l~--------~L~~L~l~~N~l~~l 366 (384)
T d2omza2 330 KLQRLFFA-NN-KVSDVS-SLANLT--------NINWLSAGHNQISDL 366 (384)
T ss_dssp TCCEEECC-SS-CCCCCG-GGGGCT--------TCCEEECCSSCCCBC
T ss_pred CCCEEECC-CC-CCCCCh-hHcCCC--------CCCEEECCCCcCCCC
Confidence 99999998 87 788887 455444 999999966554443
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.59 E-value=1.6e-16 Score=140.55 Aligned_cols=232 Identities=16% Similarity=0.063 Sum_probs=143.6
Q ss_pred CCC-ccccccccceecCCC-cccc-ccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHh
Q 036143 4 RVP-SLAKLLALQCLDLEY-TAIK-EVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEA 80 (355)
Q Consensus 4 ~lP-~i~~l~~L~~L~L~~-~~~~-~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~ 80 (355)
.+| +++++++||+|+|++ |++. .+|++|++|++|++|++++|.+..++...+..+.+|+++++..+.. ...... .
T Consensus 67 ~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~-~~~~p~-~ 144 (313)
T d1ogqa_ 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL-SGTLPP-S 144 (313)
T ss_dssp ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEE-ESCCCG-G
T ss_pred CCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccc-cccCch-h
Confidence 478 999999999999987 5676 8999999999999999999988887666559999999999987543 233334 8
Q ss_pred hcccccccceEEEeccCcc-ccccccccccc-cccccccccceeEeecCCCccccceecccCCccEEEEeccCCccCCCc
Q 036143 81 ARSSDRLDTFVGYFSKLDD-FNTYVKSSDGQ-RSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICEREGV 158 (355)
Q Consensus 81 l~~L~~L~~L~l~~~~~~~-~~~~~~~l~~L-~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~~~~ 158 (355)
++.+++|+++++..+.... .+..+..+..+ +.+.... ..+... .+..+... ......+......+..+.
T Consensus 145 l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~--n~l~~~------~~~~~~~l-~~~~l~l~~~~~~~~~~~ 215 (313)
T d1ogqa_ 145 ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR--NRLTGK------IPPTFANL-NLAFVDLSRNMLEGDASV 215 (313)
T ss_dssp GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCS--SEEEEE------CCGGGGGC-CCSEEECCSSEEEECCGG
T ss_pred hccCcccceeecccccccccccccccccccccccccccc--cccccc------cccccccc-cccccccccccccccccc
Confidence 9999999999987666543 33444444433 2222100 001100 11111111 112334444333332222
Q ss_pred cccCchhHHHH-HhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCc
Q 036143 159 TIVLPKDVQGL-IMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNE 237 (355)
Q Consensus 159 ~~~~~~~L~~L-l~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~ 237 (355)
.....+.++.+ +.++ .-...++ ..+.+++|+.|+++++ +++...|.. ++++++|++|+++++.-.+
T Consensus 216 ~~~~~~~l~~l~~~~~-~l~~~~~----------~~~~~~~L~~L~Ls~N-~l~g~iP~~-l~~L~~L~~L~Ls~N~l~g 282 (313)
T d1ogqa_ 216 LFGSDKNTQKIHLAKN-SLAFDLG----------KVGLSKNLNGLDLRNN-RIYGTLPQG-LTQLKFLHSLNVSFNNLCG 282 (313)
T ss_dssp GCCTTSCCSEEECCSS-EECCBGG----------GCCCCTTCCEEECCSS-CCEECCCGG-GGGCTTCCEEECCSSEEEE
T ss_pred cccccccccccccccc-ccccccc----------ccccccccccccCccC-eecccCChH-HhCCCCCCEEECcCCcccc
Confidence 22222333333 3332 1101111 1246788999999998 555434433 7889999999999865444
Q ss_pred eecccCcchhhhhcccccccccCcccceeeccccccc
Q 036143 238 EIVEVNDEETQKELGISAITITLPRLKKLWLSFLPEL 274 (355)
Q Consensus 238 ~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 274 (355)
.++ ..+.+++|+.+.+.+++.+
T Consensus 283 ~iP---------------~~~~L~~L~~l~l~~N~~l 304 (313)
T d1ogqa_ 283 EIP---------------QGGNLQRFDVSAYANNKCL 304 (313)
T ss_dssp ECC---------------CSTTGGGSCGGGTCSSSEE
T ss_pred cCC---------------CcccCCCCCHHHhCCCccc
Confidence 665 4457888888888887654
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.57 E-value=3.5e-14 Score=124.76 Aligned_cols=254 Identities=15% Similarity=0.099 Sum_probs=148.8
Q ss_pred CccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccc
Q 036143 6 PSLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSD 85 (355)
Q Consensus 6 P~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~ 85 (355)
|..|.+ ..+++|=++.+++.+|..+. .++++|++++|.++.+|.+.|.++++|++|+++++... ..... .+..++
T Consensus 5 p~~c~c-~~~~~~C~~~~L~~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~-~i~~~-~f~~l~ 79 (305)
T d1xkua_ 5 PFRCQC-HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPG-AFAPLV 79 (305)
T ss_dssp CTTCEE-ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC-CBCTT-TTTTCT
T ss_pred CCCCEe-cCCEEEecCCCCCccCCCCC--CCCCEEECcCCcCCCcChhHhhcccccccccccccccc-ccchh-hhhCCC
Confidence 344443 56667766667777777664 46788888888777777654477788888888775432 22222 577777
Q ss_pred cccceEEEeccCccccccccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCccCCCccccCchh
Q 036143 86 RLDTFVGYFSKLDDFNTYVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICEREGVTIVLPKD 165 (355)
Q Consensus 86 ~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~~~~~~~~~~~ 165 (355)
+|++|++..+.....+.... ..+..|. .....+....... ..................
T Consensus 80 ~L~~L~l~~n~l~~l~~~~~--~~l~~L~-------~~~n~l~~l~~~~-~~~~~~~~~l~~~~n~~~------------ 137 (305)
T d1xkua_ 80 KLERLYLSKNQLKELPEKMP--KTLQELR-------VHENEITKVRKSV-FNGLNQMIVVELGTNPLK------------ 137 (305)
T ss_dssp TCCEEECCSSCCSBCCSSCC--TTCCEEE-------CCSSCCCBBCHHH-HTTCTTCCEEECCSSCCC------------
T ss_pred ccCEecccCCccCcCccchh--hhhhhhh-------ccccchhhhhhhh-hhcccccccccccccccc------------
Confidence 78887776665544432211 1222222 0000111100000 000000111111000000
Q ss_pred HHHHHhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCceecccCcc
Q 036143 166 VQGLIMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVNDE 245 (355)
Q Consensus 166 L~~Ll~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~~~~~~ 245 (355)
..... ......+++|+.++++++ ++..+. ...+++|+.|++.++........
T Consensus 138 -------------~~~~~------~~~~~~l~~L~~l~l~~n-~l~~l~----~~~~~~L~~L~l~~n~~~~~~~~---- 189 (305)
T d1xkua_ 138 -------------SSGIE------NGAFQGMKKLSYIRIADT-NITTIP----QGLPPSLTELHLDGNKITKVDAA---- 189 (305)
T ss_dssp -------------GGGBC------TTGGGGCTTCCEEECCSS-CCCSCC----SSCCTTCSEEECTTSCCCEECTG----
T ss_pred -------------ccCCC------ccccccccccCccccccC-CccccC----cccCCccCEEECCCCcCCCCChh----
Confidence 00000 001135678899999888 344432 13468899999998766555443
Q ss_pred hhhhhcccccccccCcccceeecccccccceecCCCcee-cCCCceEEEEcCCCCccccccCCCCCCCCCCCCCCCCeeE
Q 036143 246 ETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAVL-ICNSLQEIQITPSCPKLKRLSLRLPPLDNGQPSPSPALEV 324 (355)
Q Consensus 246 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l-~~~~L~~L~i~~~c~~L~~lp~~~~~l~~~~~~~~~~L~~ 324 (355)
.+..++.+++|.++++ .+..+.. ..+ .+++|++|++. +| +++.+|.++..++ +|++
T Consensus 190 ----------~~~~~~~l~~L~~s~n-~l~~~~~--~~~~~l~~L~~L~L~-~N-~L~~lp~~l~~l~--------~L~~ 246 (305)
T d1xkua_ 190 ----------SLKGLNNLAKLGLSFN-SISAVDN--GSLANTPHLRELHLN-NN-KLVKVPGGLADHK--------YIQV 246 (305)
T ss_dssp ----------GGTTCTTCCEEECCSS-CCCEECT--TTGGGSTTCCEEECC-SS-CCSSCCTTTTTCS--------SCCE
T ss_pred ----------Hhhccccccccccccc-ccccccc--ccccccccceeeecc-cc-ccccccccccccc--------CCCE
Confidence 6678899999999987 5667655 333 36899999998 87 8999998887666 9999
Q ss_pred EEehhhhhccccc
Q 036143 325 IKIRKELWESLEW 337 (355)
Q Consensus 325 l~~~~~~~~~l~~ 337 (355)
|++..+-...+..
T Consensus 247 L~Ls~N~i~~i~~ 259 (305)
T d1xkua_ 247 VYLHNNNISAIGS 259 (305)
T ss_dssp EECCSSCCCCCCT
T ss_pred EECCCCccCccCh
Confidence 9997666666543
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=1.3e-14 Score=124.97 Aligned_cols=101 Identities=13% Similarity=0.152 Sum_probs=74.5
Q ss_pred cccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccccc
Q 036143 8 LAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRL 87 (355)
Q Consensus 8 i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L 87 (355)
..+...+...|.++++++.+|+++. .++++|++++|.+..+|.+.|.++++|++|+++++.. ..++ .++.+++|
T Consensus 6 ~~~~~~~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l---~~l~-~~~~l~~L 79 (266)
T d1p9ag_ 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL---TKLQ-VDGTLPVL 79 (266)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC---CEEE-CCSCCTTC
T ss_pred EcccCCCeEEEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccc---cccc-cccccccc
Confidence 3445555666888888888888775 4789999999999888876558899999999988654 3445 56788889
Q ss_pred cceEEEeccCccccccccccccccccc
Q 036143 88 DTFVGYFSKLDDFNTYVKSSDGQRSKH 114 (355)
Q Consensus 88 ~~L~l~~~~~~~~~~~~~~l~~L~~L~ 114 (355)
++|+++.+........+..++.|+.|.
T Consensus 80 ~~L~Ls~N~l~~~~~~~~~l~~L~~L~ 106 (266)
T d1p9ag_ 80 GTLDLSHNQLQSLPLLGQTLPALTVLD 106 (266)
T ss_dssp CEEECCSSCCSSCCCCTTTCTTCCEEE
T ss_pred ccccccccccccccccccccccccccc
Confidence 999888777665555555555555555
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=1.6e-14 Score=124.56 Aligned_cols=183 Identities=19% Similarity=0.133 Sum_probs=125.1
Q ss_pred CCCCCC-ccccccccceecCCCccccccCc-ccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchh
Q 036143 1 RLERVP-SLAKLLALQCLDLEYTAIKEVPE-GMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQ 78 (355)
Q Consensus 1 ~l~~lP-~i~~l~~L~~L~L~~~~~~~lP~-~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~ 78 (355)
.|+++| .+. +++++|+|++|.++.+|. .+.++.+|++|++++|.++.+|. . +.+++|++|+++++... ....
T Consensus 21 ~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~-~~l~~L~~L~Ls~N~l~--~~~~ 94 (266)
T d1p9ag_ 21 NLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-D-GTLPVLGTLDLSHNQLQ--SLPL 94 (266)
T ss_dssp CCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-C-SCCTTCCEEECCSSCCS--SCCC
T ss_pred CCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc-c-ccccccccccccccccc--cccc
Confidence 367888 774 689999999999999874 58999999999999999999886 3 79999999999987542 2223
Q ss_pred HhhcccccccceEEEeccCccccc-cccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCccCCC
Q 036143 79 EAARSSDRLDTFVGYFSKLDDFNT-YVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICEREG 157 (355)
Q Consensus 79 ~~l~~L~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~~~ 157 (355)
.+..+++|+.|++..+....... ....+..+..+. +..+.+..
T Consensus 95 -~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~--------------------------------l~~n~l~~--- 138 (266)
T d1p9ag_ 95 -LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY--------------------------------LKGNELKT--- 138 (266)
T ss_dssp -CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEE--------------------------------CTTSCCCC---
T ss_pred -ccccccccccccccccccceeecccccccccccccc--------------------------------ccccccce---
Confidence 78889999999997665544321 122233333222 11111111
Q ss_pred ccccCchhHHHHHhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCc
Q 036143 158 VTIVLPKDVQGLIMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNE 237 (355)
Q Consensus 158 ~~~~~~~~L~~Ll~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~ 237 (355)
++... ...+++++.++++++ +++.+.+. .+..+++|++|+++++. ++
T Consensus 139 ----------------------l~~~~--------~~~l~~l~~l~l~~N-~l~~~~~~-~~~~l~~L~~L~Ls~N~-L~ 185 (266)
T d1p9ag_ 139 ----------------------LPPGL--------LTPTPKLEKLSLANN-NLTELPAG-LLNGLENLDTLLLQENS-LY 185 (266)
T ss_dssp ----------------------CCTTT--------TTTCTTCCEEECTTS-CCSCCCTT-TTTTCTTCCEEECCSSC-CC
T ss_pred ----------------------ecccc--------ccccccchhcccccc-cccccCcc-ccccccccceeecccCC-Cc
Confidence 11100 034667888888887 56654432 26678888888888654 66
Q ss_pred eecccCcchhhhhcccccccccCcccceeeccccc
Q 036143 238 EIVEVNDEETQKELGISAITITLPRLKKLWLSFLP 272 (355)
Q Consensus 238 ~i~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 272 (355)
.++. .+..+++|+.|.|.+.|
T Consensus 186 ~lp~--------------~~~~~~~L~~L~L~~Np 206 (266)
T d1p9ag_ 186 TIPK--------------GFFGSHLLPFAFLHGNP 206 (266)
T ss_dssp CCCT--------------TTTTTCCCSEEECCSCC
T ss_pred ccCh--------------hHCCCCCCCEEEecCCC
Confidence 7764 55567888888888765
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.53 E-value=5.4e-14 Score=118.13 Aligned_cols=80 Identities=19% Similarity=0.250 Sum_probs=52.2
Q ss_pred ccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhccccc
Q 036143 7 SLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDR 86 (355)
Q Consensus 7 ~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~ 86 (355)
.+.++.+|++|++.+|+++.++ ++.++++|++|++++|.+..++. + +++++|+++++.++.. ..++ .+..+++
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~~-l-~~l~~l~~l~~~~n~~---~~i~-~l~~l~~ 108 (227)
T d1h6ua2 36 TQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-L-KNLTKITELELSGNPL---KNVS-AIAGLQS 108 (227)
T ss_dssp CHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-G-TTCCSCCEEECCSCCC---SCCG-GGTTCTT
T ss_pred CHHHcCCcCEEECCCCCCCcch-hHhcCCCCcEeecCCceeecccc-c-cccccccccccccccc---cccc-ccccccc
Confidence 3345667777777777777763 57777777777777776666553 3 7777777777766543 3344 5666666
Q ss_pred ccceEEE
Q 036143 87 LDTFVGY 93 (355)
Q Consensus 87 L~~L~l~ 93 (355)
|+.+.+.
T Consensus 109 L~~l~l~ 115 (227)
T d1h6ua2 109 IKTLDLT 115 (227)
T ss_dssp CCEEECT
T ss_pred ccccccc
Confidence 7666654
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=4.2e-14 Score=122.97 Aligned_cols=110 Identities=21% Similarity=0.183 Sum_probs=73.4
Q ss_pred CCCCC-ccccccccceecCCCccccccCc-ccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhH
Q 036143 2 LERVP-SLAKLLALQCLDLEYTAIKEVPE-GMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQE 79 (355)
Q Consensus 2 l~~lP-~i~~l~~L~~L~L~~~~~~~lP~-~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~ 79 (355)
++.+| .+. .++++|+|++|+++++|. .+.++.+|++|+++++.+..++...+..+..++.++.............
T Consensus 23 L~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~- 99 (284)
T d1ozna_ 23 LQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPA- 99 (284)
T ss_dssp CSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTT-
T ss_pred CCccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccch-
Confidence 56777 553 567888888888888865 4788888888888888888777776677788888777654444344344
Q ss_pred hhcccccccceEEEeccCcccc-ccccccccccccc
Q 036143 80 AARSSDRLDTFVGYFSKLDDFN-TYVKSSDGQRSKH 114 (355)
Q Consensus 80 ~l~~L~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~ 114 (355)
.+.++++|++|++..+...... ..++....|+.+.
T Consensus 100 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~ 135 (284)
T d1ozna_ 100 TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY 135 (284)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred hhcccccCCEEecCCcccccccccccchhcccchhh
Confidence 6778888888887655544332 2233344444443
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.45 E-value=2.3e-13 Score=111.81 Aligned_cols=79 Identities=18% Similarity=0.276 Sum_probs=47.6
Q ss_pred ccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhccccccc
Q 036143 9 AKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLD 88 (355)
Q Consensus 9 ~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 88 (355)
.++.++++|++++|+++.++ ++..+++|++|++++|.+..++. + +++++|++|++.++.. ..++ .++.+++|+
T Consensus 37 ~~l~~l~~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~N~l~~~~~-l-~~l~~L~~L~l~~n~~---~~~~-~l~~l~~L~ 109 (199)
T d2omxa2 37 TDLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP-L-KNLTKLVDILMNNNQI---ADIT-PLANLTNLT 109 (199)
T ss_dssp HHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-G-TTCTTCCEEECCSSCC---CCCG-GGTTCTTCS
T ss_pred HHhcCCCEEECCCCCCCCcc-ccccCCCcCcCccccccccCccc-c-cCCccccccccccccc---cccc-ccccccccc
Confidence 34566666666666666653 46666666666666666666554 4 6666666666665433 3333 455666666
Q ss_pred ceEEEe
Q 036143 89 TFVGYF 94 (355)
Q Consensus 89 ~L~l~~ 94 (355)
++++..
T Consensus 110 ~L~l~~ 115 (199)
T d2omxa2 110 GLTLFN 115 (199)
T ss_dssp EEECCS
T ss_pred cccccc
Confidence 665543
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.44 E-value=2.1e-13 Score=112.99 Aligned_cols=80 Identities=19% Similarity=0.233 Sum_probs=53.2
Q ss_pred cccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccccccc
Q 036143 10 KLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLDT 89 (355)
Q Consensus 10 ~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~ 89 (355)
++.+|++|++++|.++.++ ++..+++|++|++++|.++.++. + +.+++|++|+++++.. ..++ .+..+++|+.
T Consensus 44 ~L~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n~i~~l~~-~-~~l~~L~~L~l~~n~i---~~l~-~l~~l~~L~~ 116 (210)
T d1h6ta2 44 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-L-ANLKNLGWLFLDENKV---KDLS-SLKDLKKLKS 116 (210)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-G-TTCTTCCEEECCSSCC---CCGG-GGTTCTTCCE
T ss_pred HhcCccEEECcCCCCCCch-hHhhCCCCCEEeCCCccccCccc-c-ccCccccccccccccc---cccc-cccccccccc
Confidence 4667777777777777665 46777777777777777777663 4 6777777777776543 3345 5666777777
Q ss_pred eEEEecc
Q 036143 90 FVGYFSK 96 (355)
Q Consensus 90 L~l~~~~ 96 (355)
+++..+.
T Consensus 117 L~l~~~~ 123 (210)
T d1h6ta2 117 LSLEHNG 123 (210)
T ss_dssp EECTTSC
T ss_pred ccccccc
Confidence 7664433
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.41 E-value=6.4e-13 Score=111.43 Aligned_cols=96 Identities=10% Similarity=0.133 Sum_probs=69.0
Q ss_pred ccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccccccce
Q 036143 11 LLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLDTF 90 (355)
Q Consensus 11 l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L 90 (355)
+.++..++++.+.++.+. .+..+.+|++|++.+|.++.++ ++ +++++|++|+++++.. ..+. .+..+++|+.+
T Consensus 18 l~~~~~~~l~~~~~~d~~-~~~~l~~L~~L~l~~~~i~~l~-~l-~~l~~L~~L~ls~n~i---~~~~-~l~~l~~l~~l 90 (227)
T d1h6ua2 18 LANAIKIAAGKSNVTDTV-TQADLDGITTLSAFGTGVTTIE-GV-QYLNNLIGLELKDNQI---TDLA-PLKNLTKITEL 90 (227)
T ss_dssp HHHHHHHHTTCSSTTSEE-CHHHHHTCCEEECTTSCCCCCT-TG-GGCTTCCEEECCSSCC---CCCG-GGTTCCSCCEE
T ss_pred HHHHHHHHhCCCCcCCcC-CHHHcCCcCEEECCCCCCCcch-hH-hcCCCCcEeecCCcee---eccc-ccccccccccc
Confidence 445555677777776542 5678999999999999999995 67 9999999999998754 3445 68899999999
Q ss_pred EEEeccCccccccccccccccccc
Q 036143 91 VGYFSKLDDFNTYVKSSDGQRSKH 114 (355)
Q Consensus 91 ~l~~~~~~~~~~~~~~l~~L~~L~ 114 (355)
.+..+..... ..++.++.|+.+.
T Consensus 91 ~~~~n~~~~i-~~l~~l~~L~~l~ 113 (227)
T d1h6ua2 91 ELSGNPLKNV-SAIAGLQSIKTLD 113 (227)
T ss_dssp ECCSCCCSCC-GGGTTCTTCCEEE
T ss_pred cccccccccc-ccccccccccccc
Confidence 8875554432 2344444444443
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.39 E-value=4e-12 Score=113.03 Aligned_cols=50 Identities=22% Similarity=0.211 Sum_probs=30.2
Q ss_pred ccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeeccc
Q 036143 13 ALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWG 69 (355)
Q Consensus 13 ~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~ 69 (355)
++++|||++++++.+|+. +++|++|++++|.++.+|..+ .+|+.|++.++
T Consensus 39 ~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~l~~lp~~~----~~L~~L~l~~n 88 (353)
T d1jl5a_ 39 QAHELELNNLGLSSLPEL---PPHLESLVASCNSLTELPELP----QSLKSLLVDNN 88 (353)
T ss_dssp TCSEEECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCCC----TTCCEEECCSS
T ss_pred CCCEEEeCCCCCCCCCCC---CCCCCEEECCCCCCcccccch----hhhhhhhhhhc
Confidence 566677777766666643 345666677766666666543 34455555543
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=3.9e-13 Score=116.72 Aligned_cols=212 Identities=19% Similarity=0.144 Sum_probs=113.3
Q ss_pred ccccccceecCCCcccc--ccCcccccCcccceecccCccccc-ccchhhhcCCCcceeeecccCCccccchhHhhcccc
Q 036143 9 AKLLALQCLDLEYTAIK--EVPEGMEMLENLVHLTIYSKMLIK-FPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSD 85 (355)
Q Consensus 9 ~~l~~L~~L~L~~~~~~--~lP~~i~~L~~L~~L~l~~~~~~~-lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~ 85 (355)
.....|++||+++|.+. .++..+..+++|++|++++|.+.. .+..+ +++++|++|++++|...+...+..-...++
T Consensus 43 ~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l-~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~ 121 (284)
T d2astb2 43 FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTL-AKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121 (284)
T ss_dssp CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHH-TTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred ccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHH-hcCCCCcCccccccccccccccchhhHHHH
Confidence 34556777777776554 244445667777777777775442 33444 667777777777665544444442334566
Q ss_pred cccceEEEeccCc-c--ccccccc-cccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCccCCCcccc
Q 036143 86 RLDTFVGYFSKLD-D--FNTYVKS-SDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICEREGVTIV 161 (355)
Q Consensus 86 ~L~~L~l~~~~~~-~--~~~~~~~-l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~~~~~~~ 161 (355)
+|++|++.++... + ....+.. .+.|+.|. +.++... .
T Consensus 122 ~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~--------------------------------l~~~~~~----i--- 162 (284)
T d2astb2 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLN--------------------------------LSGYRKN----L--- 162 (284)
T ss_dssp TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE--------------------------------CCSCGGG----S---
T ss_pred hccccccccccccccccchhhhcccccccchhh--------------------------------hcccccc----c---
Confidence 7777766543221 1 0001111 11222222 2111000 0
Q ss_pred CchhHHHHHhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCceecc
Q 036143 162 LPKDVQGLIMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVE 241 (355)
Q Consensus 162 ~~~~L~~Ll~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~~ 241 (355)
.-..+..+. ..+++|++|++++|..+++.. ...+..+++|++|++++|..+..-..
T Consensus 163 ~~~~l~~l~-----------------------~~~~~L~~L~L~~~~~itd~~-~~~l~~~~~L~~L~L~~C~~i~~~~l 218 (284)
T d2astb2 163 QKSDLSTLV-----------------------RRCPNLVHLDLSDSVMLKNDC-FQEFFQLNYLQHLSLSRCYDIIPETL 218 (284)
T ss_dssp CHHHHHHHH-----------------------HHCTTCSEEECTTCTTCCGGG-GGGGGGCTTCCEEECTTCTTCCGGGG
T ss_pred ccccccccc-----------------------cccccccccccccccCCCchh-hhhhcccCcCCEEECCCCCCCChHHH
Confidence 000011111 246789999999998887633 33367789999999998876643211
Q ss_pred cCcchhhhhcccccccccCcccceeecccccccceecCCCceecCCCceEEEEcCCCCccccc
Q 036143 242 VNDEETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAVLICNSLQEIQITPSCPKLKRL 304 (355)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~~~L~~L~i~~~c~~L~~l 304 (355)
..+..+|+|++|++.+|..-..+.. -...+|+|+ + +|..+..+
T Consensus 219 -------------~~L~~~~~L~~L~l~~~~~d~~l~~--l~~~lp~L~---i--~~~~ls~~ 261 (284)
T d2astb2 219 -------------LELGEIPTLKTLQVFGIVPDGTLQL--LKEALPHLQ---I--NCSHFTTI 261 (284)
T ss_dssp -------------GGGGGCTTCCEEECTTSSCTTCHHH--HHHHSTTSE---E--SCCCSCCT
T ss_pred -------------HHHhcCCCCCEEeeeCCCCHHHHHH--HHHhCcccc---c--cCccCCCC
Confidence 1556789999999988732222211 111255655 4 67777654
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=9.6e-13 Score=111.31 Aligned_cols=82 Identities=13% Similarity=0.169 Sum_probs=37.1
Q ss_pred ccceecCCCccccccCcc-cccCcccceecccCccccc-ccchhhhcCCCcceeeecccCCccccchhHhhcccccccce
Q 036143 13 ALQCLDLEYTAIKEVPEG-MEMLENLVHLTIYSKMLIK-FPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLDTF 90 (355)
Q Consensus 13 ~L~~L~L~~~~~~~lP~~-i~~L~~L~~L~l~~~~~~~-lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L 90 (355)
++++|++++|.++.+|.. +.++++|++|++++|.+.. +|.+.|..+++++++++..+......... .+..+++|+++
T Consensus 30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~-~~~~l~~L~~l 108 (242)
T d1xwdc1 30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPE-AFQNLPNLQYL 108 (242)
T ss_dssp CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTT-SEECCTTCCEE
T ss_pred CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccc-ccccccccccc
Confidence 455555555555555432 4455555555555553332 33322244555555554433222222222 34455555555
Q ss_pred EEEec
Q 036143 91 VGYFS 95 (355)
Q Consensus 91 ~l~~~ 95 (355)
++..+
T Consensus 109 ~l~~~ 113 (242)
T d1xwdc1 109 LISNT 113 (242)
T ss_dssp EEESC
T ss_pred ccchh
Confidence 55433
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.38 E-value=2e-12 Score=106.97 Aligned_cols=90 Identities=17% Similarity=0.183 Sum_probs=75.5
Q ss_pred CCCCCccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhh
Q 036143 2 LERVPSLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAA 81 (355)
Q Consensus 2 l~~lP~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l 81 (355)
++.++.+..+++|++|++++|.++.++ .++.+++|++|++++|.++.+|. + ..+++|+.|++.++.. ..++ .+
T Consensus 58 i~~l~~l~~l~~L~~L~L~~n~i~~l~-~~~~l~~L~~L~l~~n~i~~l~~-l-~~l~~L~~L~l~~~~~---~~~~-~l 130 (210)
T d1h6ta2 58 IKSVQGIQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKDLSS-L-KDLKKLKSLSLEHNGI---SDIN-GL 130 (210)
T ss_dssp CCCCTTGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCGGG-G-TTCTTCCEEECTTSCC---CCCG-GG
T ss_pred CCCchhHhhCCCCCEEeCCCccccCcc-ccccCcccccccccccccccccc-c-cccccccccccccccc---cccc-cc
Confidence 456678889999999999999999887 57899999999999999999884 5 9999999999998754 4455 78
Q ss_pred cccccccceEEEeccCc
Q 036143 82 RSSDRLDTFVGYFSKLD 98 (355)
Q Consensus 82 ~~L~~L~~L~l~~~~~~ 98 (355)
..+++|+.+++..+...
T Consensus 131 ~~l~~l~~l~~~~n~l~ 147 (210)
T d1h6ta2 131 VHLPQLESLYLGNNKIT 147 (210)
T ss_dssp GGCTTCCEEECCSSCCC
T ss_pred ccccccccccccccccc
Confidence 88888888887655543
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=4e-12 Score=107.36 Aligned_cols=233 Identities=12% Similarity=0.055 Sum_probs=137.6
Q ss_pred cccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccccc
Q 036143 8 LAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRL 87 (355)
Q Consensus 8 i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L 87 (355)
.|.+. .++++.++.+++.+|+++. .++++|++++|.+..+|.+.|.++++|++|+++++......... .+..++++
T Consensus 5 ~C~C~-~~~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~-~f~~l~~l 80 (242)
T d1xwdc1 5 ICHCS-NRVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD-VFSNLPKL 80 (242)
T ss_dssp SEEEC-SSEEEEESCSCSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSS-SEESCTTC
T ss_pred cCCCc-CCEEEEeCCCCCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecc-cccccccc
Confidence 45554 3788888889999998775 58999999999999999876699999999999987553333333 67889999
Q ss_pred cceEEEec-cCcccc-ccccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCccCCCccccCchh
Q 036143 88 DTFVGYFS-KLDDFN-TYVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICEREGVTIVLPKD 165 (355)
Q Consensus 88 ~~L~l~~~-~~~~~~-~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~~~~~~~~~~~ 165 (355)
+++.+... ...... ..+..++.|+.+. +....+........+............+..+
T Consensus 81 ~~l~~~~~n~l~~~~~~~~~~l~~L~~l~-------l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l------------- 140 (242)
T d1xwdc1 81 HEIRIEKANNLLYINPEAFQNLPNLQYLL-------ISNTGIKHLPDVHKIHSLQKVLLDIQDNINI------------- 140 (242)
T ss_dssp CEEEEECCTTCCEECTTSEECCTTCCEEE-------EESCCCCSCCCCTTTCBSSCEEEEEESCTTC-------------
T ss_pred ccccccccccccccccccccccccccccc-------cchhhhccccccccccccccccccccccccc-------------
Confidence 99988643 333333 3356666676666 3332232221111111011111111111111
Q ss_pred HHHHHhhcccccccccccccccccccccccCCCccEEeeccCCCccccchHHHHhhcCCCCeEEEecCCCCceecccCcc
Q 036143 166 VQGLIMRDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCPNLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVNDE 245 (355)
Q Consensus 166 L~~Ll~~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~~~~~~ 245 (355)
..++... . .+....+..|++.++ +++.+... ..+.+++..+...+++.+++++..
T Consensus 141 ------------~~i~~~~------~-~~~~~~l~~L~l~~n-~l~~i~~~--~~~~~~l~~~~~l~~n~l~~l~~~--- 195 (242)
T d1xwdc1 141 ------------HTIERNS------F-VGLSFESVILWLNKN-GIQEIHNC--AFNGTQLDELNLSDNNNLEELPND--- 195 (242)
T ss_dssp ------------CEECTTS------S-TTSBSSCEEEECCSS-CCCEECTT--TTTTCCEEEEECTTCTTCCCCCTT---
T ss_pred ------------ccccccc------c-ccccccceeeecccc-cccccccc--cccchhhhccccccccccccccHH---
Confidence 1111100 0 012235666777665 45554332 234455555655566667776531
Q ss_pred hhhhhcccccccccCcccceeecccccccceecCCCceecCCCceEEEEcCCCCcccccc
Q 036143 246 ETQKELGISAITITLPRLKKLWLSFLPELKSVCSDNAVLICNSLQEIQITPSCPKLKRLS 305 (355)
Q Consensus 246 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~l~~~~L~~L~i~~~c~~L~~lp 305 (355)
.+..+++|++|+++++. ++.++. +. |.+|..|+.- ++..++.+|
T Consensus 196 ----------~f~~l~~L~~L~Ls~N~-l~~l~~--~~--~~~l~~L~~l-~~~~l~~lp 239 (242)
T d1xwdc1 196 ----------VFHGASGPVILDISRTR-IHSLPS--YG--LENLKKLRAR-STYNLKKLP 239 (242)
T ss_dssp ----------TTTTSCCCSEEECTTSC-CCCCCS--SS--CTTCCEEESS-SEESSSCSC
T ss_pred ----------HhcCCCCCCEEECCCCc-CCccCH--HH--HcCCcccccC-cCCCCCcCC
Confidence 45678888999888764 666644 33 4577777766 667777777
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.32 E-value=5.9e-12 Score=103.20 Aligned_cols=90 Identities=12% Similarity=0.236 Sum_probs=75.3
Q ss_pred CCCCCccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhh
Q 036143 2 LERVPSLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAA 81 (355)
Q Consensus 2 l~~lP~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l 81 (355)
+++++.++.+++|++|++++|.++.++. ++++++|++|++++|.+..+|. + +++++|++|+++++.. ...+ .+
T Consensus 52 i~~l~~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~~-l-~~l~~L~~L~l~~~~~---~~~~-~~ 124 (199)
T d2omxa2 52 IKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-L-ANLTNLTGLTLFNNQI---TDID-PL 124 (199)
T ss_dssp CCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-G-TTCTTCSEEECCSSCC---CCCG-GG
T ss_pred CCCccccccCCCcCcCccccccccCccc-ccCCcccccccccccccccccc-c-cccccccccccccccc---cccc-cc
Confidence 4566778899999999999999998874 9999999999999999988875 5 9999999999998654 3344 68
Q ss_pred cccccccceEEEeccCc
Q 036143 82 RSSDRLDTFVGYFSKLD 98 (355)
Q Consensus 82 ~~L~~L~~L~l~~~~~~ 98 (355)
..+++|+.+++..+...
T Consensus 125 ~~l~~L~~L~l~~n~l~ 141 (199)
T d2omxa2 125 KNLTNLNRLELSSNTIS 141 (199)
T ss_dssp TTCTTCSEEECCSSCCC
T ss_pred chhhhhHHhhhhhhhhc
Confidence 88899999988755443
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.32 E-value=1.3e-12 Score=98.58 Aligned_cols=92 Identities=22% Similarity=0.191 Sum_probs=51.0
Q ss_pred CCCCCccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhh
Q 036143 2 LERVPSLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAA 81 (355)
Q Consensus 2 l~~lP~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l 81 (355)
++.+|.++++.+|++|++++|.++.+|.+++.+++|++|++++|.++.+|. + +++++|++|+++++.......+. .+
T Consensus 10 l~~l~~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~-~-~~l~~L~~L~l~~N~i~~~~~~~-~l 86 (124)
T d1dcea3 10 LTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG-V-ANLPRLQELLLCNNRLQQSAAIQ-PL 86 (124)
T ss_dssp CSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGG-G-TTCSSCCEEECCSSCCCSSSTTG-GG
T ss_pred CCCCcccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccCc-c-ccccccCeEECCCCccCCCCCch-hh
Confidence 444555556666666666666666666556666666666666666665543 3 56666666666654332222223 45
Q ss_pred cccccccceEEEecc
Q 036143 82 RSSDRLDTFVGYFSK 96 (355)
Q Consensus 82 ~~L~~L~~L~l~~~~ 96 (355)
+.+++|+++++.++.
T Consensus 87 ~~~~~L~~L~l~~N~ 101 (124)
T d1dcea3 87 VSCPRLVLLNLQGNS 101 (124)
T ss_dssp GGCTTCCEEECTTSG
T ss_pred cCCCCCCEEECCCCc
Confidence 555666666554443
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=5.4e-12 Score=109.35 Aligned_cols=204 Identities=16% Similarity=0.038 Sum_probs=115.7
Q ss_pred eecCCCccccccCcccccCcccceecccCccccc-ccchhhhcCCCcceeeecccCCccccchhHhhcccccccceEEEe
Q 036143 16 CLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIK-FPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLDTFVGYF 94 (355)
Q Consensus 16 ~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~-lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L~l~~ 94 (355)
.+.+..+.+...........+|++||+++|.+.. ....++.++++|++|++.+|. .....+. .++.+++|++|++++
T Consensus 27 ~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~-l~~~~~~-~l~~~~~L~~L~Ls~ 104 (284)
T d2astb2 27 AFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR-LSDPIVN-TLAKNSNLVRLNLSG 104 (284)
T ss_dssp EEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB-CCHHHHH-HHTTCTTCSEEECTT
T ss_pred EeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccC-CCcHHHH-HHhcCCCCcCccccc
Confidence 3444444333333334456678888888775542 122234777888888887764 2334444 677777888877754
Q ss_pred cc-Ccc--ccccccccccccccccccccceeEeecCCCccccceecccCCccEEEEeccCCccCCCccccCchhHHHHHh
Q 036143 95 SK-LDD--FNTYVKSSDGQRSKHFHFQVSTVYNGSAANTRFYSFLRTREANKSVCFYGCKICEREGVTIVLPKDVQGLIM 171 (355)
Q Consensus 95 ~~-~~~--~~~~~~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~l~~~~~~~~~~~~~~~L~~Ll~ 171 (355)
+. ..+ ...-...++.|+.|. ++++..-.+ ..+..++.
T Consensus 105 c~~itd~~l~~l~~~~~~L~~L~--------------------------------ls~c~~~~~--------~~~~~~~~ 144 (284)
T d2astb2 105 CSGFSEFALQTLLSSCSRLDELN--------------------------------LSWCFDFTE--------KHVQVAVA 144 (284)
T ss_dssp CBSCCHHHHHHHHHHCTTCCEEE--------------------------------CCCCTTCCH--------HHHHHHHH
T ss_pred cccccccccchhhHHHHhccccc--------------------------------ccccccccc--------ccchhhhc
Confidence 32 211 001112233333333 222210000 00111100
Q ss_pred hcccccccccccccccccccccccCCCccEEeeccCC-CccccchHHHHhhcCCCCeEEEecCCCCceecccCcchhhhh
Q 036143 172 RDIEDVTSLNDVFSKEQGLVNAAKFSHLKALWFSYCP-NLQKLFSLQLLAALQNLEFLVVQSCNRNEEIVEVNDEETQKE 250 (355)
Q Consensus 172 ~~~~~~~~l~~~~~l~~~~~~~~~~~~L~~L~l~~~~-~l~~~~~~~~l~~L~~L~~L~l~~~~~l~~i~~~~~~~~~~~ 250 (355)
..+++|+.|.+++|. .+++........++++|++|++++|..+..-..
T Consensus 145 ----------------------~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~--------- 193 (284)
T d2astb2 145 ----------------------HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF--------- 193 (284)
T ss_dssp ----------------------HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG---------
T ss_pred ----------------------ccccccchhhhcccccccccccccccccccccccccccccccCCCchhh---------
Confidence 235679999999874 355433344456789999999999877643221
Q ss_pred cccccccccCcccceeecccccccceecCCCce-ecCCCceEEEEcCCCC
Q 036143 251 LGISAITITLPRLKKLWLSFLPELKSVCSDNAV-LICNSLQEIQITPSCP 299 (355)
Q Consensus 251 ~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~-l~~~~L~~L~i~~~c~ 299 (355)
..+..+++|++|.+++|..+..-.. .. ..+|+|++|++. +|-
T Consensus 194 ----~~l~~~~~L~~L~L~~C~~i~~~~l--~~L~~~~~L~~L~l~-~~~ 236 (284)
T d2astb2 194 ----QEFFQLNYLQHLSLSRCYDIIPETL--LELGEIPTLKTLQVF-GIV 236 (284)
T ss_dssp ----GGGGGCTTCCEEECTTCTTCCGGGG--GGGGGCTTCCEEECT-TSS
T ss_pred ----hhhcccCcCCEEECCCCCCCChHHH--HHHhcCCCCCEEeee-CCC
Confidence 1567889999999999987754322 12 236799999999 883
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=3.3e-11 Score=104.29 Aligned_cols=95 Identities=15% Similarity=0.101 Sum_probs=67.1
Q ss_pred eecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccccccceEEEe-
Q 036143 16 CLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLDTFVGYF- 94 (355)
Q Consensus 16 ~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L~l~~- 94 (355)
+.+.++++++.+|..+. .++++|++++|.++.+|.+.|.++++|++|+++++.. ...... ....+..++++....
T Consensus 15 ~v~c~~~~L~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l-~~i~~~-~~~~~~~~~~l~~~~~ 90 (284)
T d1ozna_ 15 TTSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL-ARIDAA-AFTGLALLEQLDLSDN 90 (284)
T ss_dssp EEECCSSCCSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-CEECTT-TTTTCTTCCEEECCSC
T ss_pred EEEcCCCCCCccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccc-cccccc-cccccccccccccccc
Confidence 45667778999998775 5789999999999999987569999999999997643 333333 566677888776642
Q ss_pred ccCccc-cccccccccccccc
Q 036143 95 SKLDDF-NTYVKSSDGQRSKH 114 (355)
Q Consensus 95 ~~~~~~-~~~~~~l~~L~~L~ 114 (355)
+..... ...++.++.|+.|.
T Consensus 91 ~~~~~l~~~~~~~l~~L~~L~ 111 (284)
T d1ozna_ 91 AQLRSVDPATFHGLGRLHTLH 111 (284)
T ss_dssp TTCCCCCTTTTTTCTTCCEEE
T ss_pred cccccccchhhcccccCCEEe
Confidence 223233 23455666666665
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=6.4e-12 Score=99.34 Aligned_cols=107 Identities=15% Similarity=0.090 Sum_probs=77.6
Q ss_pred CCCccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcc
Q 036143 4 RVPSLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARS 83 (355)
Q Consensus 4 ~lP~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~ 83 (355)
..|.+.++..||+|+|++|+|+.+|..+..+.+|++|++++|.+..++ ++ ..+++|++|++++|.. ...... .+..
T Consensus 10 ~~~~~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~-~~l~~L~~L~ls~N~i-~~l~~~-~~~~ 85 (162)
T d1a9na_ 10 QAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GF-PLLRRLKTLLVNNNRI-CRIGEG-LDQA 85 (162)
T ss_dssp TSCEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC-CC-CCCSSCCEEECCSSCC-CEECSC-HHHH
T ss_pred hhHhccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccC-Cc-ccCcchhhhhcccccc-cCCCcc-cccc
Confidence 456677788888899988888888766677888889999888888885 45 8888888888888654 222111 3567
Q ss_pred cccccceEEEeccCcccc--ccccccccccccc
Q 036143 84 SDRLDTFVGYFSKLDDFN--TYVKSSDGQRSKH 114 (355)
Q Consensus 84 L~~L~~L~l~~~~~~~~~--~~~~~l~~L~~L~ 114 (355)
+++|++|++..+.+..+. ..++.++.|+.+.
T Consensus 86 l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~ 118 (162)
T d1a9na_ 86 LPDLTELILTNNSLVELGDLDPLASLKSLTYLC 118 (162)
T ss_dssp CTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEE
T ss_pred ccccccceeccccccccccccccccccccchhh
Confidence 888888888877766543 2455566666665
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.22 E-value=8.9e-12 Score=93.82 Aligned_cols=94 Identities=18% Similarity=0.156 Sum_probs=78.8
Q ss_pred ceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccccccceEEEe
Q 036143 15 QCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLDTFVGYF 94 (355)
Q Consensus 15 ~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L~l~~ 94 (355)
|+|++++|+++.+| .++.+.+|++|++++|.++.+|.++ +.+++|++|+++++.. ..++ .++.+++|+++++..
T Consensus 1 R~L~Ls~n~l~~l~-~l~~l~~L~~L~ls~N~l~~lp~~~-~~l~~L~~L~l~~N~i---~~l~-~~~~l~~L~~L~l~~ 74 (124)
T d1dcea3 1 RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPAL-AALRCLEVLQASDNAL---ENVD-GVANLPRLQELLLCN 74 (124)
T ss_dssp SEEECTTSCCSSCC-CGGGGTTCCEEECCSSCCCCCCGGG-GGCTTCCEEECCSSCC---CCCG-GGTTCSSCCEEECCS
T ss_pred CEEEcCCCCCCCCc-ccccCCCCCEEECCCCccCcchhhh-hhhhcccccccccccc---cccC-ccccccccCeEECCC
Confidence 78999999999997 5999999999999999999999988 9999999999998755 4456 799999999999988
Q ss_pred ccCcccc--ccccccccccccc
Q 036143 95 SKLDDFN--TYVKSSDGQRSKH 114 (355)
Q Consensus 95 ~~~~~~~--~~~~~l~~L~~L~ 114 (355)
+.+..+. ..++.++.|+.+.
T Consensus 75 N~i~~~~~~~~l~~~~~L~~L~ 96 (124)
T d1dcea3 75 NRLQQSAAIQPLVSCPRLVLLN 96 (124)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEE
T ss_pred CccCCCCCchhhcCCCCCCEEE
Confidence 8776544 2345555555555
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.19 E-value=9.1e-11 Score=104.00 Aligned_cols=87 Identities=20% Similarity=0.164 Sum_probs=67.0
Q ss_pred CCCCCccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhh
Q 036143 2 LERVPSLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAA 81 (355)
Q Consensus 2 l~~lP~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l 81 (355)
|+.+|++ +.+|++|++++|+++++|+.+ .+|+.|++++|.++.++. + .+.|++|+++++.. ..++ .+
T Consensus 50 L~~lp~~--~~~L~~L~Ls~N~l~~lp~~~---~~L~~L~l~~n~l~~l~~-l---p~~L~~L~L~~n~l---~~lp-~~ 116 (353)
T d1jl5a_ 50 LSSLPEL--PPHLESLVASCNSLTELPELP---QSLKSLLVDNNNLKALSD-L---PPLLEYLGVSNNQL---EKLP-EL 116 (353)
T ss_dssp CSCCCSC--CTTCSEEECCSSCCSSCCCCC---TTCCEEECCSSCCSCCCS-C---CTTCCEEECCSSCC---SSCC-CC
T ss_pred CCCCCCC--CCCCCEEECCCCCCcccccch---hhhhhhhhhhcccchhhh-h---cccccccccccccc---cccc-ch
Confidence 5677843 568999999999999999765 478888999998887764 1 24699999998654 4456 67
Q ss_pred cccccccceEEEeccCcccc
Q 036143 82 RSSDRLDTFVGYFSKLDDFN 101 (355)
Q Consensus 82 ~~L~~L~~L~l~~~~~~~~~ 101 (355)
+.+++|+++++..+......
T Consensus 117 ~~l~~L~~L~l~~~~~~~~~ 136 (353)
T d1jl5a_ 117 QNSSFLKIIDVDNNSLKKLP 136 (353)
T ss_dssp TTCTTCCEEECCSSCCSCCC
T ss_pred hhhccceeeccccccccccc
Confidence 88999999999766655443
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=5.5e-11 Score=93.80 Aligned_cols=112 Identities=15% Similarity=0.162 Sum_probs=84.0
Q ss_pred CCCCCC-ccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhH
Q 036143 1 RLERVP-SLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQE 79 (355)
Q Consensus 1 ~l~~lP-~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~ 79 (355)
+|+.+| .+..+.+|++|++++|.++.++ .+..+++|++|++++|.+..+|.+++..+++|++|++.+|....-..+.
T Consensus 29 ~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~- 106 (162)
T d1a9na_ 29 KIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLD- 106 (162)
T ss_dssp CCCSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGG-
T ss_pred CCCccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCccccccccccccceecccccccccccc-
Confidence 356777 4567889999999999988885 5888999999999999999998887678999999999987653333344
Q ss_pred hhcccccccceEEEeccCccccc----cccccccccccc
Q 036143 80 AARSSDRLDTFVGYFSKLDDFNT----YVKSSDGQRSKH 114 (355)
Q Consensus 80 ~l~~L~~L~~L~l~~~~~~~~~~----~~~~l~~L~~L~ 114 (355)
.+..+++|+++++.++....... .++.++.|+.|+
T Consensus 107 ~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD 145 (162)
T d1a9na_ 107 PLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 145 (162)
T ss_dssp GGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred ccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence 67888899999988776544331 244555555554
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.02 E-value=9.6e-12 Score=101.71 Aligned_cols=107 Identities=16% Similarity=0.186 Sum_probs=84.3
Q ss_pred CCCCC-ccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHh
Q 036143 2 LERVP-SLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEA 80 (355)
Q Consensus 2 l~~lP-~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~ 80 (355)
++.+| ++..+++|++|++++|.++.++ .++.+++|++|++++|.+..+|... ..+.+|++|+++++.. ..++ .
T Consensus 37 i~~l~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~-~~~~~L~~L~l~~N~i---~~l~-~ 110 (198)
T d1m9la_ 37 IEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLD-AVADTLEELWISYNQI---ASLS-G 110 (198)
T ss_dssp CCCCHHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHH-HHHHHCCEEECSEEEC---CCHH-H
T ss_pred hhhhhhHHhcccccceeECcccCCCCcc-cccCCccccChhhcccccccccccc-cccccccccccccccc---cccc-c
Confidence 55677 7888999999999999999886 6889999999999999999888655 6777899999988754 4456 7
Q ss_pred hcccccccceEEEeccCcccc--ccccccccccccc
Q 036143 81 ARSSDRLDTFVGYFSKLDDFN--TYVKSSDGQRSKH 114 (355)
Q Consensus 81 l~~L~~L~~L~l~~~~~~~~~--~~~~~l~~L~~L~ 114 (355)
+..+++|++|++..+.+..+. ..++.++.|+.|.
T Consensus 111 ~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~ 146 (198)
T d1m9la_ 111 IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLL 146 (198)
T ss_dssp HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEE
T ss_pred ccccccccccccccchhccccccccccCCCccceee
Confidence 888999999999877766543 2355555555555
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.98 E-value=3.7e-10 Score=91.64 Aligned_cols=109 Identities=15% Similarity=0.123 Sum_probs=66.9
Q ss_pred CCCCC-ccccccccceecCCCccccc-c-CcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchh
Q 036143 2 LERVP-SLAKLLALQCLDLEYTAIKE-V-PEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQ 78 (355)
Q Consensus 2 l~~lP-~i~~l~~L~~L~L~~~~~~~-l-P~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~ 78 (355)
|+.|| .+. .++++|+|++|.++. + +..++.+.+|++|++++|.+..++.+.+..+++|++|+++++.. ......
T Consensus 20 L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l-~~l~~~ 96 (192)
T d1w8aa_ 20 LKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI-KEISNK 96 (192)
T ss_dssp CSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCC-CEECSS
T ss_pred cCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccc-cccCHH
Confidence 55666 553 567777777777753 3 33356777777777777777766666557777777777776533 222222
Q ss_pred HhhcccccccceEEEeccCccccc-cccccccccccc
Q 036143 79 EAARSSDRLDTFVGYFSKLDDFNT-YVKSSDGQRSKH 114 (355)
Q Consensus 79 ~~l~~L~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~ 114 (355)
.+.++++|++|++..+.+..... .+..+..|+.+.
T Consensus 97 -~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~ 132 (192)
T d1w8aa_ 97 -MFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132 (192)
T ss_dssp -SSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred -HHhCCCcccccccCCccccccCHHHhcCCccccccc
Confidence 56677777777776666655442 244555555444
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.84 E-value=4.9e-11 Score=97.40 Aligned_cols=93 Identities=24% Similarity=0.282 Sum_probs=77.8
Q ss_pred CCCCCccccccccceecCCCccccccCcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhh
Q 036143 2 LERVPSLAKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAA 81 (355)
Q Consensus 2 l~~lP~i~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l 81 (355)
|+.++.+..+++|++|++++|.++.+|.....+.+|++|++++|.+..++ .+ .++++|++|+++++.......+. .+
T Consensus 60 I~~i~~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~-~~-~~l~~L~~L~L~~N~i~~~~~~~-~l 136 (198)
T d1m9la_ 60 IEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GI-EKLVNLRVLYMSNNKITNWGEID-KL 136 (198)
T ss_dssp ESCCCCHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHH-HH-HHHHHSSEEEESEEECCCHHHHH-HH
T ss_pred CCCcccccCCccccChhhcccccccccccccccccccccccccccccccc-cc-cccccccccccccchhccccccc-cc
Confidence 56777889999999999999999999876677789999999999999885 45 99999999999987543222334 78
Q ss_pred cccccccceEEEeccC
Q 036143 82 RSSDRLDTFVGYFSKL 97 (355)
Q Consensus 82 ~~L~~L~~L~l~~~~~ 97 (355)
..+++|++|++.++..
T Consensus 137 ~~l~~L~~L~L~~N~l 152 (198)
T d1m9la_ 137 AALDKLEDLLLAGNPL 152 (198)
T ss_dssp TTTTTCSEEEECSSHH
T ss_pred cCCCccceeecCCCcc
Confidence 9999999999987654
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.80 E-value=2.6e-09 Score=86.43 Aligned_cols=91 Identities=14% Similarity=0.128 Sum_probs=76.4
Q ss_pred ccccccccceecCCCcccccc-CcccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchhHhhcccc
Q 036143 7 SLAKLLALQCLDLEYTAIKEV-PEGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSD 85 (355)
Q Consensus 7 ~i~~l~~L~~L~L~~~~~~~l-P~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~ 85 (355)
.+..+++|++|++++|.+..+ +..+..+.+|++|++++|.+..+|.+.|.++++|++|+++++.. ...... .+..++
T Consensus 49 ~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l-~~i~~~-~f~~l~ 126 (192)
T d1w8aa_ 49 LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQI-SCVMPG-SFEHLN 126 (192)
T ss_dssp SGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCC-CEECTT-SSTTCT
T ss_pred ccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccccCCccc-cccCHH-HhcCCc
Confidence 678999999999999999866 55578899999999999999999998779999999999998654 333333 688999
Q ss_pred cccceEEEeccCcc
Q 036143 86 RLDTFVGYFSKLDD 99 (355)
Q Consensus 86 ~L~~L~l~~~~~~~ 99 (355)
+|+++++..+....
T Consensus 127 ~L~~l~L~~N~~~~ 140 (192)
T d1w8aa_ 127 SLTSLNLASNPFNC 140 (192)
T ss_dssp TCCEEECTTCCBCC
T ss_pred cccccccccccccc
Confidence 99999997665543
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.71 E-value=9.5e-09 Score=80.06 Aligned_cols=91 Identities=18% Similarity=0.070 Sum_probs=42.5
Q ss_pred ccccccceecCCCccccccCcccccCcccceecccCc-ccccccchhhhcCCCcceeeecccCCccccchhHhhcccccc
Q 036143 9 AKLLALQCLDLEYTAIKEVPEGMEMLENLVHLTIYSK-MLIKFPAGILPKLCNLYSLRLNWGSETSRETVQEAARSSDRL 87 (355)
Q Consensus 9 ~~l~~L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~-~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L 87 (355)
+.+.....++.+++++...|..+..+.+|++|+++++ .++.++.+.|..+++|+.|+++++.. ...... .+..+++|
T Consensus 5 C~c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l-~~i~~~-~f~~l~~L 82 (156)
T d2ifga3 5 CCPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL-RFVAPD-AFHFTPRL 82 (156)
T ss_dssp SCCSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCC-CEECTT-GGGSCSCC
T ss_pred CCcCCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeecccc-CCcccc-cccccccc
Confidence 3444444455555555555555555555555555443 35555444335555555555554322 111112 34455555
Q ss_pred cceEEEeccCcccc
Q 036143 88 DTFVGYFSKLDDFN 101 (355)
Q Consensus 88 ~~L~l~~~~~~~~~ 101 (355)
++|+++.+.+..+.
T Consensus 83 ~~L~Ls~N~l~~l~ 96 (156)
T d2ifga3 83 SRLNLSFNALESLS 96 (156)
T ss_dssp CEEECCSSCCSCCC
T ss_pred cceeccCCCCcccC
Confidence 55555544444433
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.59 E-value=4.4e-08 Score=76.18 Aligned_cols=94 Identities=18% Similarity=0.073 Sum_probs=75.7
Q ss_pred CCCCC-ccccccccceecCCCc-cccccCc-ccccCcccceecccCcccccccchhhhcCCCcceeeecccCCccccchh
Q 036143 2 LERVP-SLAKLLALQCLDLEYT-AIKEVPE-GMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGSETSRETVQ 78 (355)
Q Consensus 2 l~~lP-~i~~l~~L~~L~L~~~-~~~~lP~-~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~~~~~~~~~ 78 (355)
+.++| .+..+++|+.|+++++ .++.++. .+..+.+|+.|++++|.+..++.+.|..+++|++|+++++.. ..++
T Consensus 20 ~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l---~~l~ 96 (156)
T d2ifga3 20 ALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL---ESLS 96 (156)
T ss_dssp CCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC---SCCC
T ss_pred CccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCC---cccC
Confidence 45678 8888999999999877 5998865 489999999999999999999887669999999999998754 2333
Q ss_pred HhhcccccccceEEEeccCc
Q 036143 79 EAARSSDRLDTFVGYFSKLD 98 (355)
Q Consensus 79 ~~l~~L~~L~~L~l~~~~~~ 98 (355)
..+....+|++|++.++...
T Consensus 97 ~~~~~~~~l~~L~L~~Np~~ 116 (156)
T d2ifga3 97 WKTVQGLSLQELVLSGNPLH 116 (156)
T ss_dssp STTTCSCCCCEEECCSSCCC
T ss_pred hhhhccccccccccCCCccc
Confidence 24444557999998777654
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.06 E-value=8.8e-07 Score=77.83 Aligned_cols=90 Identities=14% Similarity=0.069 Sum_probs=61.2
Q ss_pred ccccccccceecCCCcccc-----ccCcccccCcccceecccCcccccc----cchh------hhcCCCcceeeecccCC
Q 036143 7 SLAKLLALQCLDLEYTAIK-----EVPEGMEMLENLVHLTIYSKMLIKF----PAGI------LPKLCNLYSLRLNWGSE 71 (355)
Q Consensus 7 ~i~~l~~L~~L~L~~~~~~-----~lP~~i~~L~~L~~L~l~~~~~~~l----P~~i------~~~L~~L~~L~l~~~~~ 71 (355)
++.+...|+.|+|++|.+. .+...+...++|+.|+++++..... |..+ +...++|++|++++|..
T Consensus 26 ~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i 105 (344)
T d2ca6a1 26 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 105 (344)
T ss_dssp HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred HHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccc
Confidence 5666888999999998663 3555667788999999988744322 2221 26678899999988643
Q ss_pred ccccc---hhHhhcccccccceEEEeccC
Q 036143 72 TSRET---VQEAARSSDRLDTFVGYFSKL 97 (355)
Q Consensus 72 ~~~~~---~~~~l~~L~~L~~L~l~~~~~ 97 (355)
.... +...+...++|++|.+..+..
T Consensus 106 -~~~~~~~l~~~l~~~~~L~~L~l~~n~l 133 (344)
T d2ca6a1 106 -GPTAQEPLIDFLSKHTPLEHLYLHNNGL 133 (344)
T ss_dssp -CTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred -ccccccchhhhhcccccchheecccccc
Confidence 2222 222556778899998876554
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.85 E-value=3.6e-06 Score=65.42 Aligned_cols=82 Identities=17% Similarity=0.114 Sum_probs=41.4
Q ss_pred cceecCCCccccccCcccccCcccceecccCcccccccc--hhhhcCCCcceeeecccCCccccchhHhhcccccccceE
Q 036143 14 LQCLDLEYTAIKEVPEGMEMLENLVHLTIYSKMLIKFPA--GILPKLCNLYSLRLNWGSETSRETVQEAARSSDRLDTFV 91 (355)
Q Consensus 14 L~~L~L~~~~~~~lP~~i~~L~~L~~L~l~~~~~~~lP~--~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~~L~ 91 (355)
+..++...+....++.....+++|++|++++|.++.++. ..+.++++|++|+++++.......+. .+. ..+|++++
T Consensus 44 ~~~l~~~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~-~l~-~~~L~~L~ 121 (162)
T d1koha1 44 DVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELD-KIK-GLKLEELW 121 (162)
T ss_dssp CCCTTSHHHHHHHHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHH-HHT-TCCCSSCC
T ss_pred hhhcchhhhHhhhhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhh-hhh-ccccceee
Confidence 333333333333333333456677777777776665532 22266777777777765442222222 222 23566666
Q ss_pred EEeccC
Q 036143 92 GYFSKL 97 (355)
Q Consensus 92 l~~~~~ 97 (355)
+.++..
T Consensus 122 L~~Npl 127 (162)
T d1koha1 122 LDGNSL 127 (162)
T ss_dssp CTTSTT
T ss_pred cCCCCc
Confidence 655544
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=97.74 E-value=9.7e-06 Score=70.93 Aligned_cols=62 Identities=11% Similarity=0.033 Sum_probs=45.7
Q ss_pred cccccccceecCCCccccc-----------cCcccccCcccceecccCccccc-----ccchhhhcCCCcceeeecccC
Q 036143 8 LAKLLALQCLDLEYTAIKE-----------VPEGMEMLENLVHLTIYSKMLIK-----FPAGILPKLCNLYSLRLNWGS 70 (355)
Q Consensus 8 i~~l~~L~~L~L~~~~~~~-----------lP~~i~~L~~L~~L~l~~~~~~~-----lP~~i~~~L~~L~~L~l~~~~ 70 (355)
+...++|+.|+++++.... +...+..+++|+.|++++|.+.. +...+ ...++|++|+++++.
T Consensus 55 l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l-~~~~~L~~L~l~~n~ 132 (344)
T d2ca6a1 55 IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFL-SKHTPLEHLYLHNNG 132 (344)
T ss_dssp TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHH-HHCTTCCEEECCSSC
T ss_pred HHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccccchhhhh-cccccchheeccccc
Confidence 4567899999998774322 33345578899999999997654 33334 788999999999864
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.66 E-value=4.9e-06 Score=64.61 Aligned_cols=61 Identities=20% Similarity=0.059 Sum_probs=36.1
Q ss_pred cccccceecCCCccccccC---cccccCcccceecccCcccccccchhhhcCCCcceeeecccC
Q 036143 10 KLLALQCLDLEYTAIKEVP---EGMEMLENLVHLTIYSKMLIKFPAGILPKLCNLYSLRLNWGS 70 (355)
Q Consensus 10 ~l~~L~~L~L~~~~~~~lP---~~i~~L~~L~~L~l~~~~~~~lP~~i~~~L~~L~~L~l~~~~ 70 (355)
.+.+|++|+|++|.++.++ ..+..+++|++|++++|.+..++.-...+..+|+.|++.++.
T Consensus 63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Np 126 (162)
T d1koha1 63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNS 126 (162)
T ss_dssp HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTST
T ss_pred hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCC
Confidence 4566777777777665542 334566677777777776666655211334456666666643
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.80 E-value=0.00015 Score=65.09 Aligned_cols=88 Identities=15% Similarity=0.140 Sum_probs=58.7
Q ss_pred ccccccceecCCCcccc-----ccCcccccCcccceecccCcccccccchhhh-----cCCCcceeeecccCCccccc--
Q 036143 9 AKLLALQCLDLEYTAIK-----EVPEGMEMLENLVHLTIYSKMLIKFPAGILP-----KLCNLYSLRLNWGSETSRET-- 76 (355)
Q Consensus 9 ~~l~~L~~L~L~~~~~~-----~lP~~i~~L~~L~~L~l~~~~~~~lP~~i~~-----~L~~L~~L~l~~~~~~~~~~-- 76 (355)
..++++|+|+|++|+++ .++..+..+++|++||+++|.+.......+. ...+|++|++++|.. +...
T Consensus 24 ~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i-t~~~~~ 102 (460)
T d1z7xw1 24 PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL-TGAGCG 102 (460)
T ss_dssp HHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCC-BGGGHH
T ss_pred HhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCc-cccccc
Confidence 45788889999988765 3455567888899999998876532211111 234789999988753 3322
Q ss_pred -hhHhhcccccccceEEEeccC
Q 036143 77 -VQEAARSSDRLDTFVGYFSKL 97 (355)
Q Consensus 77 -~~~~l~~L~~L~~L~l~~~~~ 97 (355)
+...+..+++|++|++..+..
T Consensus 103 ~l~~~l~~~~~L~~L~L~~N~i 124 (460)
T d1z7xw1 103 VLSSTLRTLPTLQELHLSDNLL 124 (460)
T ss_dssp HHHHHTTSCTTCCEEECCSSBC
T ss_pred cccchhhccccccccccccccc
Confidence 222567788899988876554
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.72 E-value=8.4e-05 Score=66.72 Aligned_cols=101 Identities=14% Similarity=0.129 Sum_probs=70.5
Q ss_pred cccceecCCCccccc--cCcccccCcccceecccCccccc-----ccchhhhcCCCcceeeecccCCccccchhHhhcc-
Q 036143 12 LALQCLDLEYTAIKE--VPEGMEMLENLVHLTIYSKMLIK-----FPAGILPKLCNLYSLRLNWGSETSRETVQEAARS- 83 (355)
Q Consensus 12 ~~L~~L~L~~~~~~~--lP~~i~~L~~L~~L~l~~~~~~~-----lP~~i~~~L~~L~~L~l~~~~~~~~~~~~~~l~~- 83 (355)
.+|+.||+++++++. +.+-+..+++|+.|++++|.++. ++..+ ..+++|++||++++.. +...+. .+..
T Consensus 2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L-~~~~~L~~LdLs~N~i-~~~~~~-~l~~~ 78 (460)
T d1z7xw1 2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSAL-RVNPALAELNLRSNEL-GDVGVH-CVLQG 78 (460)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHH-HTCTTCCEEECTTCCC-HHHHHH-HHHHT
T ss_pred CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHH-hcCCCCCEEECcCCcC-ChHHHH-HHHHH
Confidence 478999999998873 34456789999999999998763 34444 8899999999998643 333333 3322
Q ss_pred ----cccccceEEEeccCccc-----ccccccccccccccc
Q 036143 84 ----SDRLDTFVGYFSKLDDF-----NTYVKSSDGQRSKHF 115 (355)
Q Consensus 84 ----L~~L~~L~l~~~~~~~~-----~~~~~~l~~L~~L~~ 115 (355)
-.+|++|++..+...+. ...+...+.|+.|..
T Consensus 79 l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L 119 (460)
T d1z7xw1 79 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 119 (460)
T ss_dssp TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEEC
T ss_pred HhcCCCCCCEEECCCCCccccccccccchhhcccccccccc
Confidence 24799999977765431 233555666776663
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=94.74 E-value=0.0066 Score=46.36 Aligned_cols=85 Identities=8% Similarity=0.054 Sum_probs=57.7
Q ss_pred cccccceecCCCc-ccc-----ccCcccccCcccceecccCccccc-----ccchhhhcCCCcceeeecccCCccccchh
Q 036143 10 KLLALQCLDLEYT-AIK-----EVPEGMEMLENLVHLTIYSKMLIK-----FPAGILPKLCNLYSLRLNWGSETSRETVQ 78 (355)
Q Consensus 10 ~l~~L~~L~L~~~-~~~-----~lP~~i~~L~~L~~L~l~~~~~~~-----lP~~i~~~L~~L~~L~l~~~~~~~~~~~~ 78 (355)
+.++|+.|+|+++ .+. .+-..+....+|++|++++|.+.. +...+ ...+.|++|++++|.. +..++.
T Consensus 13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L-~~n~~L~~L~L~~n~i-~~~g~~ 90 (167)
T d1pgva_ 13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELI-ETSPSLRVLNVESNFL-TPELLA 90 (167)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHH-HHCSSCCEEECCSSBC-CHHHHH
T ss_pred CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhh-hhcccccceeeehhhc-chHHHH
Confidence 3578999999875 453 244456677889999999987653 22233 7778899999998753 333222
Q ss_pred ---HhhcccccccceEEEecc
Q 036143 79 ---EAARSSDRLDTFVGYFSK 96 (355)
Q Consensus 79 ---~~l~~L~~L~~L~l~~~~ 96 (355)
..+..-+.|++|++..+.
T Consensus 91 ~l~~aL~~n~sL~~L~l~~n~ 111 (167)
T d1pgva_ 91 RLLRSTLVTQSIVEFKADNQR 111 (167)
T ss_dssp HHHHHTTTTCCCSEEECCCCS
T ss_pred HHHHHHHhCCcCCEEECCCCc
Confidence 156666778888886554
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=93.64 E-value=0.01 Score=45.19 Aligned_cols=86 Identities=15% Similarity=0.082 Sum_probs=58.3
Q ss_pred cccccccceecCCCcccc-----ccCcccccCcccceecccCcccccc-----cchhhhcCCCcceeeecccCCc--ccc
Q 036143 8 LAKLLALQCLDLEYTAIK-----EVPEGMEMLENLVHLTIYSKMLIKF-----PAGILPKLCNLYSLRLNWGSET--SRE 75 (355)
Q Consensus 8 i~~l~~L~~L~L~~~~~~-----~lP~~i~~L~~L~~L~l~~~~~~~l-----P~~i~~~L~~L~~L~l~~~~~~--~~~ 75 (355)
+...++|++|++++|.+. .+...+...+.|++|++++|.+..- -..+ ..-+.|++|++.++... +..
T Consensus 40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL-~~n~sL~~L~l~~n~~~~~g~~ 118 (167)
T d1pgva_ 40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRST-LVTQSIVEFKADNQRQSVLGNQ 118 (167)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHT-TTTCCCSEEECCCCSSCCCCHH
T ss_pred HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHH-HhCCcCCEEECCCCcCCCccHH
Confidence 455678999999999775 3344456678999999999977642 2233 67788999999875321 111
Q ss_pred c---hhHhhcccccccceEEEe
Q 036143 76 T---VQEAARSSDRLDTFVGYF 94 (355)
Q Consensus 76 ~---~~~~l~~L~~L~~L~l~~ 94 (355)
. +...+..-+.|++|.+.+
T Consensus 119 ~~~~l~~~L~~n~sL~~l~l~~ 140 (167)
T d1pgva_ 119 VEMDMMMAIEENESLLRVGISF 140 (167)
T ss_dssp HHHHHHHHHHHCSSCCEEECCC
T ss_pred HHHHHHHHHHhCCCccEeeCcC
Confidence 1 222555667788887753
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=92.70 E-value=0.017 Score=43.74 Aligned_cols=82 Identities=17% Similarity=0.061 Sum_probs=57.6
Q ss_pred cccccceecCCCc-ccc-----ccCcccccCcccceecccCccccc-----ccchhhhcCCCcceeeecccCCccccch-
Q 036143 10 KLLALQCLDLEYT-AIK-----EVPEGMEMLENLVHLTIYSKMLIK-----FPAGILPKLCNLYSLRLNWGSETSRETV- 77 (355)
Q Consensus 10 ~l~~L~~L~L~~~-~~~-----~lP~~i~~L~~L~~L~l~~~~~~~-----lP~~i~~~L~~L~~L~l~~~~~~~~~~~- 77 (355)
+.+.|++|+++++ .++ .+-..+....+|+.|++++|.+.. +-.. +...++++.++++.+.. ....+
T Consensus 15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~-l~~~~~l~~l~l~~~~~-~~~g~~ 92 (166)
T d1io0a_ 15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEM-LKVNNTLKSLNVESNFI-SGSGIL 92 (166)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHH-HHHCSSCCEEECCSSCC-CHHHHH
T ss_pred cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHH-Hhhcccchhhhhccccc-cchhHH
Confidence 4678999999984 453 355556688999999999997653 2222 37889999999998643 22222
Q ss_pred --hHhhcccccccceEEE
Q 036143 78 --QEAARSSDRLDTFVGY 93 (355)
Q Consensus 78 --~~~l~~L~~L~~L~l~ 93 (355)
...+...++|+.+++.
T Consensus 93 ~l~~~l~~~~~L~~l~L~ 110 (166)
T d1io0a_ 93 ALVEALQSNTSLIELRID 110 (166)
T ss_dssp HHHHGGGGCSSCCEEECC
T ss_pred HHHHHHHhCccccEEeec
Confidence 2267777889887775
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=90.00 E-value=0.064 Score=40.36 Aligned_cols=64 Identities=5% Similarity=-0.031 Sum_probs=41.5
Q ss_pred ccCcccceecccCc-cccc-----ccchhhhcCCCcceeeecccCCccccchh---HhhcccccccceEEEeccC
Q 036143 32 EMLENLVHLTIYSK-MLIK-----FPAGILPKLCNLYSLRLNWGSETSRETVQ---EAARSSDRLDTFVGYFSKL 97 (355)
Q Consensus 32 ~~L~~L~~L~l~~~-~~~~-----lP~~i~~~L~~L~~L~l~~~~~~~~~~~~---~~l~~L~~L~~L~l~~~~~ 97 (355)
.+.++|++|+++++ .+.. +-..+ .+.++|++|++++|.. +...+. ..+...++++.+.+..+..
T Consensus 14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al-~~n~~L~~L~Ls~n~l-~~~~~~~L~~~l~~~~~l~~l~l~~~~~ 86 (166)
T d1io0a_ 14 NNDPDLEEVNLNNIMNIPVPTLKACAEAL-KTNTYVKKFSIVGTRS-NDPVAFALAEMLKVNNTLKSLNVESNFI 86 (166)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHH-TTCCSCCEEECTTSCC-CHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred hcCCCCcEEEcCCCCCCCHHHHHHHHHHH-hcCCccCeeeccCCcc-cHHHHHHHHHHHhhcccchhhhhccccc
Confidence 56688999999874 4432 22223 6788899999998743 222222 2456677888888865554
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