Citrus Sinensis ID: 036169

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------62
PSGSKGEITSLLSNHFKVSITGASGHIFHYSGIRRKIIDKVCETNSADLAEKDIAYDGEKSLFTIGALPHKKNGVPDLSQTTSNDSPDGHGSNNERDKKRRRVSQSKTFKVEISFPAKIPLPAIAAALHGQESQNSREAFRVLDIILRQHAAKQMNLGVSLTLEVVFLDLGCWGFHSSFQATQGGLSLNIDGSTTSIIKPGPLVDFLIANQNVHDCYQLHWAKAKRTLKNLRIRVHPFNREYRITGLSDSTCKRQMFSWKSGVKDRNGDVKCVDVTVFDYFVNHGRINLCFSGDFPCIDVGKPRKPTYIPIEPCSLLSLQRYTKALTVFQRSALVEKSQQKPQEKMKIITDVMRSNKYDSEPMLRSCAISINSRFAKVEGRILSAPRGAYHPKNGRWSFHNKIFVQAAKIDHWAVVNFSARYDIRSLCRDLIRFGEMKGIVTPVRADRMFVQMKQKFEKCPCFLLCLLPDKKDSDLYGSWKRKTLSEFGIFNQCLAPTKVNEHDLMNVLLKINANCQRELTDPLILLGGLNSLLAIEQSKNLPLVSKVPTIIFGMDVSHGSPGHSNVPSVATVGCNSFSRNWPILSRYRASVRSQSAKLEMTDSLFKPLPNKDDAAIVR
cccccccEEEEEEEEEEEEEEcccEEEEEEccccHHHHHHHHHHcccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccccHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccccccccEEEccccccEEEEEEEEEEEcccEEEEccccEEEEEccccHHHHHHHHcccccccHHHHHHHHHHccccEEEEccccEEEEEcccccccccccEEccccccccccccccccEEEHHHHHHHHccccEEccccccEEEEcccccccccccccEEEcccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHccccEEEccEEEEEEEEEcccccccccccccEEEEccccEEccccccEEEEEEEccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccccEEEEEEcccccccccccEEEEEccccccEEEEEccccccHHHHHHHHHHHHHcccccccccEEccccccEEEcccccccccccccccEEEEEEEcccccccccccccEEEEEEEEccccccccccEEEEEEEcccccHHHHHHcccccccccccccc
cccccccEEEEEEEEEEEEccccccEEEEcccccHHHHHHHHHHHHHHHccccccccccccEEccccccccccEEEEEEEEcccccccccccccccccccccccccEEEEEEEEEEEEccHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccEEccccccccccEEEEEcccHHEEcccHHHHHHHHHcccccccHHHHHHHHHHcEEEEEEccccccEEEEEccccccccccEEcccccccccccccccEEEEHHHHHHHHccEEEEccccccccccccccccccccHHHHHHHcHHHHHHHccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHcccEEccccEEEEEEEcccccEEEcccccEEEccccEEEccEEEEEEEEEEccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccccEEEEEEEcccccccEEEEEEEccccEEEEEEEccccccccHHHHHHEEEEEEcccccccccEEEEEcccccEEcccccccccccccccEEEEEcccccccccccccccEEEEEEccccccccHHEHEEEEEEcccHHHHHHHHHcccccccccccccc
psgskgeiTSLLSNHFKVsitgasghifhysGIRRKIIDKVCetnsadlaekdiaydgekslftigalphkkngvpdlsqttsndspdghgsnnerdkkrrrvsqsktfkveisfpakiplPAIAAALhgqesqnsrEAFRVLDIILRQHAAKQMNLGVSLTLEVVFLDLgcwgfhssfqatqgglslnidgsttsiikpgplVDFLIANQNVHDCYQLHWAKAKRTLKNLRirvhpfnreyritglsdstckrqmfswksgvkdrngdvkcvdVTVFDYFVNhgrinlcfsgdfpcidvgkprkptyipiepcsllSLQRYTKALTVFQRSALveksqqkpqEKMKIITDVmrsnkydsepmlrSCAISINSRFAKVEGrilsaprgayhpkngrwsfHNKIFVQAAKIDHWAVVNFSARYDIRSLCRDLIRfgemkgivtpvRADRMFVQMKqkfekcpcfllcllpdkkdsdlygswkrktlsefgifnqclaptkvneHDLMNVLLKINANCQRELTDPLILLGGLNSLLAieqsknlplvskvptiifgmdvshgspghsnvpsvatvgcnsfsrnwpiLSRYRASVRSQSAKLEmtdslfkplpnkddaaivr
psgskgeiTSLLSNHFKVSITGASGHIFHYSGIRRKIIDKVCETNSADLAEKDIAYDGEKSLFTIGALPHKKNGVPDLsqttsndspdghgsnnerdkkrrrvsqsktfkveisfpakIPLPAIAAALHGQESQNSREAFRVLDIILRQHAAKQMNLGVSLTLEVVFLDLGCWGFHSSFQATQGGLSLNIDGSTTSIIKPGPLVDFLIANQNVHDCYQLHWAKAKrtlknlrirvhpfnreyritglsdstckrQMFSwksgvkdrngdvKCVDVTVFDYFVNHGRINLCFSGDFPCIDVGKPRKPTYIPIEPCSLLSLQRYTKALTVFQRSalveksqqkpqekmkIITDVMRSNKYDSEPMLRSCAISINSRFAKVEGRILSAPRGAYHPKNGRWSFHNKIFVQAAKIDHWAVVNFSARYDIRSLCRDLIRFGEMKGIVTPVRADRMFVQMKQKFEKCPCFLLCLLPDKKDSDLYGSWKRKTLSEFGIFNQCLAPTKVNEHDLMNVLLKINANCQRELTDPLILLGGLNSLLAIEQSKNLPLVSKVPTIIFGMDVSHGSPGHSNVPSVATVGCNSFSRNWPILSRYRASVRSQSAklemtdslfkplpnkddaaivr
PSGSKGEITSLLSNHFKVSITGASGHIFHYSGIRRKIIDKVCETNSADLAEKDIAYDGEKSLFTIGALPHKKNGVPDLSQTTSNDSPDGHGSNNERDKKRRRVSQSKTFKVEISFpakiplpaiaaalHGQESQNSREAFRVLDIILRQHAAKQMNLGVSLTLEVVFLDLGCWGFHSSFQATQGGLSLNIDGSTTSIIKPGPLVDFLIANQNVHDCYQLHWAKAKRTLKNLRIRVHPFNREYRITGLSDSTCKRQMFSWKSGVKDRNGDVKCVDVTVFDYFVNHGRINLCFSGDFPCIDVGKPRKPTYIPIEPCSLLSLQRYTKALTVFQRSALVEKSQQKPQEKMKIITDVMRSNKYDSEPMLRSCAISINSRFAKVEGRILSAPRGAYHPKNGRWSFHNKIFVQAAKIDHWAVVNFSARYDIRSLCRDLIRFGEMKGIVTPVRADRMFVQMKQKFEKCPCFLLCLLPDKKDSDLYGSWKRKTLSEFGIFNQCLAPTKVNEHDLMNVLLKINANCQRELTDPlillgglnsllAIEQSKNLPLVSKVPTIIFGMDVSHGSPGHSNVPSVATVGCNSFSRNWPILSRYRASVRSQSAKLEMTDSLFKPLPNKDDAAIVR
**********LLSNHFKVSITGASGHIFHYSGIRRKIIDKVCETNSADLAEKDIAYDGEKSLFTIGAL*****************************************KVEISFPAKIPLPAIAAALH********EAFRVLDIILRQHAAKQMNLGVSLTLEVVFLDLGCWGFHSSFQATQGGLSLNIDGSTTSIIKPGPLVDFLIANQNVHDCYQLHWAKAKRTLKNLRIRVHPFNREYRITGLS*********************VKCVDVTVFDYFVNHGRINLCFSGDFPCIDVGKPRKPTYIPIEPCSLLSLQRYTKALTVFQRSAL****************************MLRSCAISINSRFAKVEGRILSAPRGAYHPKNGRWSFHNKIFVQAAKIDHWAVVNFSARYDIRSLCRDLIRFGEMKGIVTPVRADRMFVQMKQKFEKCPCFLLCLLPDKKDSDLYGSWKRKTLSEFGIFNQCLAPTKVNEHDLMNVLLKINANCQRELTDPLILLGGLNSLLAIEQSKNLPLVSKVPTIIFGMDVSHG*****NVPSVATVGCNSFSRNWPILSRYR******************************
*SGSKGEITSLLSNHFKVSITGASGHIFHYSGIRRKIIDKVCETNSADLAEKDIAYDGEKSLFTIGALPHKKNGVPDLSQTTSN******************VSQSKTFKVEISFPAKIPLPAIAAALHGQESQNSREAFRVLDIILRQHAAKQMNLGVSLTLEVVFLDLGCWGFHSSFQATQGGLSLNIDGSTTSIIKPGPLVDFLIANQNVHDCYQLHWAKAKRTLKNLRIRVHPFNREYRITGLSDSTCKRQMF**************CVDVTVFDYFVNHGRINLCFSGDFPC***********IPIEPCSLLSLQRY***********************MKIITDVMRSNKYDSEPMLRSCAISINSRFAKVEGRILSAPRGAYHPKNGRWSFHNKIFVQAAKIDHWAVVNFSARYDIRSLCRDLIRFGEMKGIVTPVRADRMFVQMKQKFEKCPCFLLCLLPDKKDSDLYGSWKRKTLSEFGIFNQCLAPTKVNEHDLMNVLLKINANCQRELTDPLILLGGLNSLLAIEQSKNLPLVSKVPTIIFGMDVSHGSP****VPSVATVGCNSFSRNWPILSRYRASVRSQSAKLEMTDSLFKPLPNKDDAAIVR
PSGSKGEITSLLSNHFKVSITGASGHIFHYSGIRRKIIDKVCETNSADLAEKDIAYDGEKSLFTIGALPHKKNGVPDLS***************************KTFKVEISFPAKIPLPAIAAALHGQESQNSREAFRVLDIILRQHAAKQMNLGVSLTLEVVFLDLGCWGFHSSFQATQGGLSLNIDGSTTSIIKPGPLVDFLIANQNVHDCYQLHWAKAKRTLKNLRIRVHPFNREYRITGLSDSTCKRQMFSWKSGVKDRNGDVKCVDVTVFDYFVNHGRINLCFSGDFPCIDVGKPRKPTYIPIEPCSLLSLQRYTKALTVFQRSALV*********KMKIITDVMRSNKYDSEPMLRSCAISINSRFAKVEGRILSAPRGAYHPKNGRWSFHNKIFVQAAKIDHWAVVNFSARYDIRSLCRDLIRFGEMKGIVTPVRADRMFVQMKQKFEKCPCFLLCLLPDKKDSDLYGSWKRKTLSEFGIFNQCLAPTKVNEHDLMNVLLKINANCQRELTDPLILLGGLNSLLAIEQSKNLPLVSKVPTIIFGMDVSHGSPGHSNVPSVATVGCNSFSRNWPILSRYRASVRSQSAKLEMTDSLFKPLPNKDDAAIVR
*****GEITSLLSNHFKVSITGASGHIFHYSGIRRKIIDKVCETNSADLAEKDIAYDGEKSLFTIGALPHKKNGVPDLSQTTSN********************QSKTFKVEISFPAKIPLPAIAAALHGQESQNSREAFRVLDIILRQHAAKQMNLGVSLTLEVVFLDLGCWGFHSSFQATQGGLSLNIDGSTTSIIKPGPLVDFLIANQNVHDCYQLHWAKAKRTLKNLRIRVHPFNREYRITGLSDSTCKRQMFSWKSGVKDR*GDVKCVDVTVFDYFVNHGRINLCFSGDFPCIDVGKPRKPTYIPIEPCSLLSLQRYTKALTVFQRSALVEKSQQKPQEKMKIITDVMRSNKYDSEPMLRSCAISINSRFAKVEGRILSAPRGAYHPKNGRWSFHNKIFVQAAKIDHWAVVNFSARYDIRSLCRDLIRFGEMKGIVTPVRADRMFVQMKQKFEKCPCFLLCLLPDKKDSDLYGSWKRKTLSEFGIFNQCLAPTKVNEHDLMNVLLKINANCQRELTDPLILLGGLNSLLAIEQSKNLPLVSKVPTIIFGMDVSHGS*GHSNVPSVATVGCNSFSRNWPILSRYRASVRSQSAKLEMTDSLFKPL**********
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PSGSKGEITSLLSNHFKVSITGASGHIFHYSGIRRKIIDKVCETNSADLAEKDIAYDGEKSLFTIGALPHKKNGVPDLSQTTSNDSPDGHGSNNERDKKRRRVSQSKTFKVEISFPAKIPLPAIAAALHGQESQNSREAFRVLDIILRQHAAKQMNLGVSLTLEVVFLDLGCWGFHSSFQATQGGLSLNIDGSTTSIIKPGPLVDFLIANQNVHDCYQLHWAKAKRTLKNLRIRVHPFNREYRITGLSDSTCKRQMFSWKSGVKDRNGDVKCVDVTVFDYFVNHGRINLCFSGDFPCIDVGKPRKPTYIPIEPCSLLSLQRYTKALTVFQRSALVEKSQQKPQEKMKIITDVMRSNKYDSEPMLRSCAISINSRFAKVEGRILSAPRGAYHPKNGRWSFHNKIFVQAAKIDHWAVVNFSARYDIRSLCRDLIRFGEMKGIVTPVRADRMFVQMKQKFEKCPCFLLCLLPDKKDSDLYGSWKRKTLSEFGIFNQCLAPTKVNEHDLMNVLLKINANCQRELTDPLILLGGLNSLLAIEQSKNLPLVSKVPTIIFGMDVSHGSPGHSNVPSVATVGCNSFSRNWPILSRYRASVRSQSAKLEMTDSLFKPLPNKDDAAIVR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query619 2.2.26 [Sep-21-2011]
Q0JF58 911 Protein argonaute 4B OS=O yes no 0.969 0.658 0.530 0.0
Q9SDG8 904 Protein argonaute 4A OS=O no no 0.967 0.662 0.523 0.0
Q9ZVD5 924 Protein argonaute 4 OS=Ar yes no 0.966 0.647 0.511 0.0
Q84VQ0 896 Protein argonaute 9 OS=Ar no no 0.959 0.662 0.489 1e-173
Q6YSJ5 883 Protein argonaute 16 OS=O no no 0.962 0.674 0.453 1e-158
Q5NBN9 889 Protein argonaute 15 OS=O no no 0.964 0.671 0.446 1e-149
Q3E984 850 Protein argonaute 8 OS=Ar no no 0.941 0.685 0.453 1e-146
O48771 878 Protein argonaute 6 OS=Ar no no 0.938 0.661 0.410 1e-135
Q6EU14 1082 Protein argonaute 1A OS=O no no 0.915 0.524 0.306 7e-70
Q7XSA2 1118 Protein argonaute 1B OS=O no no 0.915 0.507 0.304 5e-68
>sp|Q0JF58|AGO4B_ORYSJ Protein argonaute 4B OS=Oryza sativa subsp. japonica GN=AGO4B PE=2 SV=1 Back     alignment and function desciption
 Score =  660 bits (1703), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/669 (53%), Positives = 444/669 (66%), Gaps = 69/669 (10%)

Query: 3   GSKGEITSLLSNHFKVSITGASGHIFHYS--------------GIRRKIIDKVCETNSAD 48
           G KG+   LL+NH+KVS+  +  + FHY+              G+ RK+IDK+ +T  ++
Sbjct: 52  GRKGQPIQLLANHYKVSVKSSEEYFFHYNVILKYEDDRPVDGKGVGRKVIDKLQQTYRSE 111

Query: 49  LAEKDIAYDGEKSLFTIGALPHKKNG----VPDLS--QTTSNDSPDGHGSNNERDKKR-R 101
           L+ KD AYDGEKSLFTIGALP   N     + D+S  +T +N SP G+ S    D+KR R
Sbjct: 112 LSSKDFAYDGEKSLFTIGALPQVTNEFTVVLEDVSTGKTAANGSPGGNDSPGGSDRKRVR 171

Query: 102 RVSQSKTFKVEISFPAKIPLPAIAAALHGQESQNSREAFRVLDIILRQHAAKQMNLGVSL 161
           R  Q+KTFKVE+ F AKIP+ AIA A+ GQES+NS+EA RVLDIILRQH+AKQ  L V  
Sbjct: 172 RPYQTKTFKVELCFAAKIPMNAIAQAIKGQESENSQEALRVLDIILRQHSAKQGCLLVRQ 231

Query: 162 TL----EVVFLDLG-----CWGFHSSFQATQGGLSLNIDGSTTSIIKPGPLVDFLIANQN 212
           +        F+DLG     C GFHSSF+ TQ GLSLNID STT I+KPGP++DFL+ANQ 
Sbjct: 232 SFFHNNPNNFVDLGGGVMGCRGFHSSFRGTQSGLSLNIDVSTTMIVKPGPVIDFLLANQK 291

Query: 213 VHDCYQLHWAKAKRTLKNLRIRVHPFNREYRITGLSDSTCKRQMFSWKSGVKDRNGDVKC 272
           V    ++ W KAKR LKNLRIR  P N E++I GLSD  C  QMFS +      NGDV  
Sbjct: 292 VDHPDRIDWQKAKRALKNLRIRTTPVNSEFKIIGLSDRNCNEQMFSLRQR-NGNNGDVDE 350

Query: 273 VDVTVFDYFVNHGRINLCFSGDFPCIDVGKPRKPTYIPIEPCSLLSLQRYTKALTVFQRS 332
           V+VTV+DYFV +  I L +SG+ PCI+VGKP++PTY PIE CSL+ LQRYTKAL+  QRS
Sbjct: 351 VEVTVYDYFVKNKGIELRYSGNLPCINVGKPKRPTYFPIELCSLIPLQRYTKALSTLQRS 410

Query: 333 ALVEKSQQKPQEKMKIITDVMRSNKYDSEPMLRSCAISINSRFAKVEGRILSAPR----- 387
           +LVEKS+QKPQE+M ++ D +R + YDS+PMLR+  ISI   F +VEGR+L  P+     
Sbjct: 411 SLVEKSRQKPQERMSVLNDALRHSNYDSDPMLRASGISIAQNFTQVEGRVLQPPKLKAGN 470

Query: 388 -GAYHPKNGRWSFHNKIFVQAAKIDHWAVVNFSARYDIRSLCRDLIRFGEMKGIV----- 441
                P+NGRW+F+NK  +Q   +D WAVVNFSAR D+R+L RDLIR    KGI      
Sbjct: 471 GEDIFPRNGRWNFNNKKLIQTCSVDKWAVVNFSARCDVRNLIRDLIRNASAKGIQMAEPF 530

Query: 442 -----------TPV--RADRMFVQMKQKFEKCPCFLLCLLPDKKDSDLYGSWKRKTLSEF 488
                       PV  R D MF Q+K K    P FLLCLLP++K+ ++YG WKRK L+EF
Sbjct: 531 DVFEESPSLRRAPVSRRVDDMFEQIKSKLPGAPKFLLCLLPERKNCEVYGPWKRKCLAEF 590

Query: 489 GIFNQCLAPTKVNEHDLMNVLLKINANCQRELTDPLILLGGLNSLLAIEQSKNLPLVSKV 548
           GI  QCLAP +VN+  L+N+LLKINA            LGG+NSLL IE S ++PLVSK 
Sbjct: 591 GIVTQCLAPQRVNDQYLLNLLLKINAK-----------LGGINSLLQIEASPSIPLVSKT 639

Query: 549 PTIIFGMDVSHGSPGHSNVPSVATVGCNSFSRNWPILSRYRASVRSQSAKLEMTDSLFKP 608
           PTII GMDVSHG PG S+ PS+A V     SR WP++S+YRASV +QS KLEM  SLFKP
Sbjct: 640 PTIILGMDVSHGQPGQSDRPSIAAVVS---SRQWPLISKYRASVHTQSPKLEMMSSLFKP 696

Query: 609 LPNKDDAAI 617
              +DD  I
Sbjct: 697 RGTEDDGLI 705
Probably involved in the RNA silencing pathway. May bind to short RNAs such as microRNAs (miRNAs) or short interfering RNAs (siRNAs), and represses the translation of mRNAs which are complementary to them.
Oryza sativa subsp. japonica (taxid: 39947)
>sp|Q9SDG8|AGO4A_ORYSJ Protein argonaute 4A OS=Oryza sativa subsp. japonica GN=AGO4A PE=2 SV=1 Back     alignment and function description
>sp|Q9ZVD5|AGO4_ARATH Protein argonaute 4 OS=Arabidopsis thaliana GN=AGO4 PE=1 SV=2 Back     alignment and function description
>sp|Q84VQ0|AGO9_ARATH Protein argonaute 9 OS=Arabidopsis thaliana GN=AGO9 PE=1 SV=2 Back     alignment and function description
>sp|Q6YSJ5|AGO16_ORYSJ Protein argonaute 16 OS=Oryza sativa subsp. japonica GN=AGO16 PE=2 SV=2 Back     alignment and function description
>sp|Q5NBN9|AGO15_ORYSJ Protein argonaute 15 OS=Oryza sativa subsp. japonica GN=AGO15 PE=2 SV=2 Back     alignment and function description
>sp|Q3E984|AGO8_ARATH Protein argonaute 8 OS=Arabidopsis thaliana GN=AGO8 PE=3 SV=1 Back     alignment and function description
>sp|O48771|AGO6_ARATH Protein argonaute 6 OS=Arabidopsis thaliana GN=AGO6 PE=2 SV=2 Back     alignment and function description
>sp|Q6EU14|AGO1A_ORYSJ Protein argonaute 1A OS=Oryza sativa subsp. japonica GN=AGO1A PE=2 SV=1 Back     alignment and function description
>sp|Q7XSA2|AGO1B_ORYSJ Protein argonaute 1B OS=Oryza sativa subsp. japonica GN=AGO1B PE=2 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query619
224139620 921 argonaute protein group [Populus trichoc 0.967 0.650 0.607 0.0
224089867 930 argonaute protein group [Populus trichoc 0.967 0.644 0.609 0.0
359481481 866 PREDICTED: protein argonaute 4A-like [Vi 0.969 0.692 0.605 0.0
297741753 879 unnamed protein product [Vitis vinifera] 0.969 0.682 0.601 0.0
255572903 917 eukaryotic translation initiation factor 0.969 0.654 0.572 0.0
225436053 913 PREDICTED: protein argonaute 4 [Vitis vi 0.972 0.659 0.561 0.0
449463869 915 PREDICTED: protein argonaute 4-like [Cuc 0.964 0.652 0.551 0.0
449516890 915 PREDICTED: LOW QUALITY PROTEIN: protein 0.964 0.652 0.551 0.0
268376309 933 argonaute 4-like protein [Pelargonium x 0.970 0.644 0.559 0.0
255573685 921 eukaryotic translation initiation factor 0.964 0.648 0.557 0.0
>gi|224139620|ref|XP_002323196.1| argonaute protein group [Populus trichocarpa] gi|222867826|gb|EEF04957.1| argonaute protein group [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  783 bits (2023), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/676 (60%), Positives = 496/676 (73%), Gaps = 77/676 (11%)

Query: 3   GSKGEITSLLSNHFKVSITGASGHIFHYS--------------GIRRKIIDKVCETNSAD 48
           GS+G+   L+SNHFKVSI+   GH FHYS              GI R++IDKV ET  +D
Sbjct: 59  GSRGQKIQLVSNHFKVSISNTGGHFFHYSVSLYYEDGRPVDAKGIGRRLIDKVHETYGSD 118

Query: 49  LAEKDIAYDGEKSLFTIGALPHKKNGVPDL------SQTTSNDSPDGHGSNNERDKKR-R 101
           LA KD AYDGEKSLFTIGALP  K     L      ++ + N SP G+GS NE DKKR R
Sbjct: 119 LAGKDFAYDGEKSLFTIGALPRNKMEFTVLLDSFSSNRNSGNGSPVGNGSPNETDKKRMR 178

Query: 102 RVSQSKTFKVEISFPAKIPLPAIAAALHGQESQNSREAFRVLDIILRQHAAKQMNLGVSL 161
           R  QSKTFKVE+SF AKIP+ AIAAAL GQES+NS+EA RVLDIILRQHAAKQ   G  L
Sbjct: 179 RAFQSKTFKVEMSFAAKIPMQAIAAALRGQESENSQEALRVLDIILRQHAAKQ---GCLL 235

Query: 162 TLEVVFLD------------LGCWGFHSSFQATQGGLSLNIDGSTTSIIKPGPLVDFLIA 209
             +  F +            LGC GFHSSF+A QGGLSLN+DGSTT+II+PGPL+DFLIA
Sbjct: 236 VRQSFFHNNPKNYVDLGGGVLGCRGFHSSFRALQGGLSLNMDGSTTTIIQPGPLIDFLIA 295

Query: 210 NQNVHDCYQLHWAKAKRTLKNLRIRVHPFNREYRITGLSDSTCKRQMFSWKSGVKDRNGD 269
           NQNV + +Q+ WAKAKRT+KNLRI+V P N+EYRITGLS+++CK QMFS KS   D N D
Sbjct: 296 NQNVSNPFQIDWAKAKRTMKNLRIKVSPTNQEYRITGLSENSCKEQMFSLKSRAADGN-D 354

Query: 270 VKCVDVTVFDYFVNHGRINLCFSGDFPCIDVGKPRKPTYIPIEPCSLLSLQRYTKALTVF 329
           V+  D+TV+DYFVNH  I+L +SGD PCI+VGKP++PTYIP+E CSLLSLQRYTKALTV 
Sbjct: 355 VESFDITVYDYFVNHRSIDLRYSGDLPCINVGKPKRPTYIPVELCSLLSLQRYTKALTVH 414

Query: 330 QRSALVEKSQQKPQEKMKIITDVMRSNKYDSEPMLRSCAISINSRFAKVEGRILSAPR-- 387
           QRS LVEKS+QKPQEK++I+ DVM+SN Y +EPMLRSC I+I+S+F +V+GR+L AP+  
Sbjct: 415 QRSQLVEKSRQKPQEKIRILADVMKSNNYAAEPMLRSCGITISSQFTQVQGRVLPAPKLK 474

Query: 388 ----GAYHPKNGRWSFHNKIFVQAAKIDHWAVVNFSARYDIRSLCRDLIRFGEMKGIVT- 442
                   P+NGRW+F+NK F + +KI++WAVVNFSAR D+R L RDLI+FGEMKGI+  
Sbjct: 475 AGNGEDVIPRNGRWNFNNKKFFEPSKIENWAVVNFSARCDVRGLVRDLIKFGEMKGILIS 534

Query: 443 -----------------PVRADRMFVQMKQKFEKCPC-FLLCLLPDKKDSDLYGSWKRKT 484
                            PVR D+MF Q++  F   P  FL+CLLPD+K+SD+YG WKRK 
Sbjct: 535 DPMDVLEENAQFRRAPPPVRVDKMFEQIQTAFPDAPPRFLVCLLPDRKNSDIYGPWKRKN 594

Query: 485 LSEFGIFNQCLAPTKVNEHDLMNVLLKINANCQRELTDPLILLGGLNSLLAIEQSKNLPL 544
           L+E+GIFNQCLAPT+VN+  ++NVLLKINA            LGGLNSLLA+EQS+N+P 
Sbjct: 595 LAEYGIFNQCLAPTRVNDQYILNVLLKINAK-----------LGGLNSLLAMEQSRNIPF 643

Query: 545 VSKVPTIIFGMDVSHGSPGHSNVPSVATVGCNSFSRNWPILSRYRASVRSQSAKLEMTDS 604
           VSKVPTIIFGMDVSHGSPG S++PS+A V     SRNWP+LSRYRASVRSQS K+EM DS
Sbjct: 644 VSKVPTIIFGMDVSHGSPGQSDIPSIAAVVS---SRNWPLLSRYRASVRSQSPKVEMVDS 700

Query: 605 LFKPLPN-KDDAAIVR 619
           LFK   + KDD  IVR
Sbjct: 701 LFKLTADKKDDCGIVR 716

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224089867|ref|XP_002308843.1| argonaute protein group [Populus trichocarpa] gi|222854819|gb|EEE92366.1| argonaute protein group [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359481481|ref|XP_002279115.2| PREDICTED: protein argonaute 4A-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297741753|emb|CBI32885.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255572903|ref|XP_002527383.1| eukaryotic translation initiation factor 2c, putative [Ricinus communis] gi|223533254|gb|EEF35008.1| eukaryotic translation initiation factor 2c, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225436053|ref|XP_002275928.1| PREDICTED: protein argonaute 4 [Vitis vinifera] gi|296083994|emb|CBI24382.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449463869|ref|XP_004149653.1| PREDICTED: protein argonaute 4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449516890|ref|XP_004165479.1| PREDICTED: LOW QUALITY PROTEIN: protein argonaute 4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|268376309|gb|ACZ04920.1| argonaute 4-like protein [Pelargonium x hortorum] Back     alignment and taxonomy information
>gi|255573685|ref|XP_002527764.1| eukaryotic translation initiation factor 2c, putative [Ricinus communis] gi|223532851|gb|EEF34625.1| eukaryotic translation initiation factor 2c, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query619
TAIR|locus:2059258 924 AGO4 "ARGONAUTE 4" [Arabidopsi 0.951 0.637 0.459 1.5e-131
TAIR|locus:2179008 896 AGO9 "ARGONAUTE 9" [Arabidopsi 0.943 0.651 0.430 4.7e-119
TAIR|locus:2147072 850 AT5G21030 [Arabidopsis thalian 0.953 0.694 0.421 2.3e-117
TAIR|locus:2059370 878 AGO6 "ARGONAUTE 6" [Arabidopsi 0.954 0.673 0.387 4.4e-100
UNIPROTKB|Q69VD5 979 PHN1 "Protein argonaute PNH1" 0.620 0.392 0.286 7.6e-57
TAIR|locus:2170897 988 AGO10 "ARGONAUTE 10" [Arabidop 0.646 0.404 0.287 1.1e-55
UNIPROTKB|Q851R2 1058 MEL1 "Protein argonaute MEL1" 0.662 0.387 0.264 1.1e-49
TAIR|locus:2057851 997 AGO5 "ARGONAUTE 5" [Arabidopsi 0.657 0.408 0.292 2.9e-41
UNIPROTKB|Q6T5B7 861 EIF2C3 "Protein argonaute-3" [ 0.915 0.658 0.248 1.4e-29
UNIPROTKB|F1P3Z0 860 EIF2C3 "Protein argonaute-3" [ 0.915 0.659 0.248 1.1e-28
TAIR|locus:2059258 AGO4 "ARGONAUTE 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1290 (459.2 bits), Expect = 1.5e-131, P = 1.5e-131
 Identities = 296/644 (45%), Positives = 397/644 (61%)

Query:    15 HFKVSITGASGHIFHYSGIRRKIIDKVCETNSADLAEKDIAYDGEKSLFTIGALPHKKNG 74
             H+ V++    G      G+ RKI+DKV +T  +DL  K+ AYDGEK+LFT GALP  K  
Sbjct:    89 HYSVALFYDDGRPVEQKGVGRKILDKVHQTYHSDLDGKEFAYDGEKTLFTYGALPSNKMD 148

Query:    75 ----VPDLSQTTSND--SPDGHGSNNERDKKR-RRVSQSKTFKVEISFXXXXXXXXXXXX 127
                 + ++S T +N   SP+G+ S ++ D+KR RR ++SK F+VEIS+            
Sbjct:   149 FSVVLEEVSATRANGNGSPNGNESPSDGDRKRLRRPNRSKNFRVEISYAAKIPLQALANA 208

Query:   128 XHGQESQNSREAFRVLDIILRQHAAKQMNLGVSLTL--------EVVFLD-LGCWGFHSS 178
               GQES+NS+EA RVLDIILRQHAA+Q  L V  +         E V  + LGC GFHSS
Sbjct:   209 MRGQESENSQEAIRVLDIILRQHAARQGCLLVRQSFFHNDPTNCEPVGGNILGCRGFHSS 268

Query:   179 FQATQGGLSLNIDGSTTSIIKPGPLVDFLIANQNVHDCYQLHWAKAKRTLKNLRIRVHPF 238
             F+ TQGG+SLN+D +TT IIKPGP+VDFLIANQN  D Y + W+KAKRTLKNLR++V P 
Sbjct:   269 FRTTQGGMSLNMDVTTTMIIKPGPVVDFLIANQNARDPYSIDWSKAKRTLKNLRVKVSPS 328

Query:   239 NREYRITGLSDSTCKRQMFSWKSGVKDRNGDVKCVDVTVFDYFVNHGRINLCFSGDFPCI 298
              +E++ITGLSD  C+ Q F  K    + NG+ +  +VTV DYF +   I+L +S D PCI
Sbjct:   329 GQEFKITGLSDKPCREQTFELKKRNPNENGEFETTEVTVADYFRDTRHIDLQYSADLPCI 388

Query:   299 DVGKPRKPTYIPIEPCSLLSLQRYTKALTVFQRSALVEKSQQKPQEKMKIITDVMRSNKY 358
             +VGKP++PTYIP+E C+L+ LQRYTKALT FQRSALVEKS+QKPQE+M +++  ++ + Y
Sbjct:   389 NVGKPKRPTYIPLELCALVPLQRYTKALTTFQRSALVEKSRQKPQERMTVLSKALKVSNY 448

Query:   359 DSEPMLRSCAISINSRFAKVEGRILSAPR-----GAY-HPKNGRWSFHNKIFVQAAKIDH 412
             D+EP+LRSC ISI+S F +VEGR+L AP+     G+   P+NGRW+F+NK FV+  KI  
Sbjct:   449 DAEPLLRSCGISISSNFTQVEGRVLPAPKLKMGCGSETFPRNGRWNFNNKEFVEPTKIQR 508

Query:   413 WAVVNFSARYDIRSLCRDLIRFGEMKGIVTPVRADRMFVQMKQKFEKCPCFLLCLLPDKK 472
             W VVNFSAR ++R +  DLI+ G  KGI       ++F +  Q F + P       P  +
Sbjct:   509 WVVVNFSARCNVRQVVDDLIKIGGSKGIEI-ASPFQVFEEGNQ-FRRAP-------PMIR 559

Query:   473 DSDLYGSWKRKTLSEFGIFNQCLAPTKVNEHDLMNVLLKIN-------ANCQRELTDPXX 525
               +++   + K L     F  C+ P K N  DL     K N         C      P  
Sbjct:   560 VENMFKDIQSK-LPGVPQFILCVLPDKKNS-DLYGPWKKKNLTEFGIVTQCMAPTRQPND 617

Query:   526 XXXXXX------------XXXAIEQSKNLPLVSKVPTIIFGMDVSHGSPGHSNVPSVATV 573
                                  ++E++    ++SKVPTII GMDVSHGSPG S+VPS+A V
Sbjct:   618 QYLTNLLLKINAKLGGLNSMLSVERTPAFTVISKVPTIILGMDVSHGSPGQSDVPSIAAV 677

Query:   574 GCNSFSRNWPILSRYRASVRSQSAKLEMTDSLFKPLPNKDDAAI 617
                  SR WP++S+YRASVR+Q +K EM +SL K    +DD  I
Sbjct:   678 VS---SREWPLISKYRASVRTQPSKAEMIESLVKKNGTEDDGII 718
GO:0005634 "nucleus" evidence=ISM
GO:0006342 "chromatin silencing" evidence=RCA;IMP
GO:0005730 "nucleolus" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0005719 "nuclear euchromatin" evidence=IDA
GO:0015030 "Cajal body" evidence=IDA
GO:0051567 "histone H3-K9 methylation" evidence=RCA;IMP
GO:0006306 "DNA methylation" evidence=RCA;IMP
GO:0010495 "long-distance posttranscriptional gene silencing" evidence=IMP
GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP
GO:0031048 "chromatin silencing by small RNA" evidence=RCA;TAS
GO:0030422 "production of siRNA involved in RNA interference" evidence=IGI
GO:0035197 "siRNA binding" evidence=IDA
GO:0005829 "cytosol" evidence=RCA
GO:0000023 "maltose metabolic process" evidence=RCA
GO:0000226 "microtubule cytoskeleton organization" evidence=RCA
GO:0000278 "mitotic cell cycle" evidence=RCA
GO:0000724 "double-strand break repair via homologous recombination" evidence=RCA
GO:0000911 "cytokinesis by cell plate formation" evidence=RCA
GO:0006260 "DNA replication" evidence=RCA
GO:0006261 "DNA-dependent DNA replication" evidence=RCA
GO:0006275 "regulation of DNA replication" evidence=RCA
GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA
GO:0007267 "cell-cell signaling" evidence=RCA
GO:0008283 "cell proliferation" evidence=RCA
GO:0009555 "pollen development" evidence=RCA
GO:0009616 "virus induced gene silencing" evidence=RCA
GO:0009855 "determination of bilateral symmetry" evidence=RCA
GO:0009909 "regulation of flower development" evidence=RCA
GO:0009965 "leaf morphogenesis" evidence=RCA
GO:0010014 "meristem initiation" evidence=RCA
GO:0010073 "meristem maintenance" evidence=RCA
GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA
GO:0016246 "RNA interference" evidence=RCA
GO:0016444 "somatic cell DNA recombination" evidence=RCA
GO:0016458 "gene silencing" evidence=RCA
GO:0016568 "chromatin modification" evidence=RCA
GO:0016569 "covalent chromatin modification" evidence=RCA
GO:0016570 "histone modification" evidence=RCA
GO:0016572 "histone phosphorylation" evidence=RCA
GO:0019252 "starch biosynthetic process" evidence=RCA
GO:0031047 "gene silencing by RNA" evidence=RCA
GO:0034968 "histone lysine methylation" evidence=RCA
GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA
GO:0043085 "positive regulation of catalytic activity" evidence=RCA
GO:0048449 "floral organ formation" evidence=RCA
GO:0051225 "spindle assembly" evidence=RCA
GO:0051726 "regulation of cell cycle" evidence=RCA
TAIR|locus:2179008 AGO9 "ARGONAUTE 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2147072 AT5G21030 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2059370 AGO6 "ARGONAUTE 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q69VD5 PHN1 "Protein argonaute PNH1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2170897 AGO10 "ARGONAUTE 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q851R2 MEL1 "Protein argonaute MEL1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2057851 AGO5 "ARGONAUTE 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q6T5B7 EIF2C3 "Protein argonaute-3" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1P3Z0 EIF2C3 "Protein argonaute-3" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9ZVD5AGO4_ARATHNo assigned EC number0.51110.96600.6471yesno
Q0JF58AGO4B_ORYSJNo assigned EC number0.53060.96930.6586yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query619
PLN03202 900 PLN03202, PLN03202, protein argonaute; Provisional 0.0
cd04657 426 cd04657, Piwi_ago-like, Piwi_ago-like: PIWI domain 5e-50
cd02846114 cd02846, PAZ_argonaute_like, PAZ domain, argonaute 1e-21
pfam02170114 pfam02170, PAZ, PAZ domain 4e-20
smart00950 301 smart00950, Piwi, This domain is found in the prot 1e-15
pfam02171 296 pfam02171, Piwi, Piwi domain 3e-15
cd04658 448 cd04658, Piwi_piwi-like_Euk, Piwi_piwi-like_Euk: P 3e-13
pfam0869952 pfam08699, DUF1785, Domain of unknown function (DU 2e-07
cd02826 393 cd02826, Piwi-like, Piwi-like: PIWI domain 8e-07
>gnl|CDD|215631 PLN03202, PLN03202, protein argonaute; Provisional Back     alignment and domain information 
 Score =  912 bits (2360), Expect = 0.0
 Identities = 394/675 (58%), Positives = 482/675 (71%), Gaps = 77/675 (11%)

Query: 3   GSKGEITSLLSNHFKVSITGASGHIFHYS--------------GIRRKIIDKVCETNSAD 48
           GSKG+   LL+NHFKVS+    GH FHYS              GI RK+IDKV ET S+D
Sbjct: 40  GSKGQKIQLLTNHFKVSVNNPDGHFFHYSVSLTYEDGRPVDGKGIGRKVIDKVQETYSSD 99

Query: 49  LAEKDIAYDGEKSLFTIGALPHKKNG----VPDLS--QTTSNDSPDGHGSNNERDKKR-R 101
           LA KD AYDGEKSLFT+GALP  K      + D+S  +   N SP G+GS N  D+KR R
Sbjct: 100 LAGKDFAYDGEKSLFTVGALPQNKLEFTVVLEDVSSNRNNGNGSPVGNGSPNGGDRKRSR 159

Query: 102 RVSQSKTFKVEISFPAKIPLPAIAAALHGQESQNSREAFRVLDIILRQHAAKQMNLGVSL 161
           R  QSKTFKVEISF AKIP+ AIA AL GQES+NS++A RVLDIILRQHAAKQ   G  L
Sbjct: 160 RPYQSKTFKVEISFAAKIPMQAIANALRGQESENSQDALRVLDIILRQHAAKQ---GCLL 216

Query: 162 TLEVVFLD------------LGCWGFHSSFQATQGGLSLNIDGSTTSIIKPGPLVDFLIA 209
             +  F +            LGC GFHSSF+ TQGGLSLNID STT I++PGP+VDFLIA
Sbjct: 217 VRQSFFHNDPKNFVDLGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIVQPGPVVDFLIA 276

Query: 210 NQNVHDCYQLHWAKAKRTLKNLRIRVHPFNREYRITGLSDSTCKRQMFSWKSGVKDRNG- 268
           NQNV D +Q+ W+KAKR LKNLR++V P N+EY+ITGLS+  CK Q FS K   ++ NG 
Sbjct: 277 NQNVRDPFQIDWSKAKRMLKNLRVKVSPSNQEYKITGLSEKPCKEQTFSLKQ--RNGNGN 334

Query: 269 DVKCVDVTVFDYFVNHGRINLCFSGDFPCIDVGKPRKPTYIPIEPCSLLSLQRYTKALTV 328
           +V+ V++TV+DYFV H  I L +SGD PCI+VGKP++PTY PIE CSL+SLQRYTKAL+ 
Sbjct: 335 EVETVEITVYDYFVKHRGIELRYSGDLPCINVGKPKRPTYFPIELCSLVSLQRYTKALST 394

Query: 329 FQRSALVEKSQQKPQEKMKIITDVMRSNKYDSEPMLRSCAISINSRFAKVEGRILSAPR- 387
            QRS+LVEKS+QKPQE+MK++TD ++S+ YD++PMLRSC ISI+S+F +VEGR+L AP+ 
Sbjct: 395 LQRSSLVEKSRQKPQERMKVLTDALKSSNYDADPMLRSCGISISSQFTQVEGRVLPAPKL 454

Query: 388 -----GAYHPKNGRWSFHNKIFVQAAKIDHWAVVNFSARYDIRSLCRDLIRFGEMKGIVT 442
                  + P+NGRW+F+NK  V+  KI+ WAVVNFSAR DIR L RDLI+ GEMKGI  
Sbjct: 455 KVGNGEDFFPRNGRWNFNNKKLVEPTKIERWAVVNFSARCDIRHLVRDLIKCGEMKGINI 514

Query: 443 ------------------PVRADRMFVQMKQKFEKCPCFLLCLLPDKKDSDLYGSWKRKT 484
                             PVR ++MF Q++ K    P FLLC+LP++K+SD+YG WK+K 
Sbjct: 515 EPPFDVFEENPQFRRAPPPVRVEKMFEQIQSKLPGPPQFLLCILPERKNSDIYGPWKKKN 574

Query: 485 LSEFGIFNQCLAPTKVNEHDLMNVLLKINANCQRELTDPLILLGGLNSLLAIEQSKNLPL 544
           LSEFGI  QC+APT+VN+  L NVLLKINA            LGGLNSLLAIE S ++PL
Sbjct: 575 LSEFGIVTQCIAPTRVNDQYLTNVLLKINAK-----------LGGLNSLLAIEHSPSIPL 623

Query: 545 VSKVPTIIFGMDVSHGSPGHSNVPSVATVGCNSFSRNWPILSRYRASVRSQSAKLEMTDS 604
           VSKVPTII GMDVSHGSPG S+VPS+A V     SR WP++SRYRASVR+QS K+EM DS
Sbjct: 624 VSKVPTIILGMDVSHGSPGQSDVPSIAAV---VSSRQWPLISRYRASVRTQSPKVEMIDS 680

Query: 605 LFKPLPNKDDAAIVR 619
           LFKP+ +KDD  I+R
Sbjct: 681 LFKPVGDKDDDGIIR 695

Length = 900
>gnl|CDD|240015 cd04657, Piwi_ago-like, Piwi_ago-like: PIWI domain, Argonaute-like subfamily Back     alignment and domain information
>gnl|CDD|239212 cd02846, PAZ_argonaute_like, PAZ domain, argonaute_like subfamily Back     alignment and domain information
>gnl|CDD|216914 pfam02170, PAZ, PAZ domain Back     alignment and domain information
>gnl|CDD|214930 smart00950, Piwi, This domain is found in the protein Piwi and its relatives Back     alignment and domain information
>gnl|CDD|216915 pfam02171, Piwi, Piwi domain Back     alignment and domain information
>gnl|CDD|240016 cd04658, Piwi_piwi-like_Euk, Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes Back     alignment and domain information
>gnl|CDD|219976 pfam08699, DUF1785, Domain of unknown function (DUF1785) Back     alignment and domain information
>gnl|CDD|239208 cd02826, Piwi-like, Piwi-like: PIWI domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 619
PLN03202 900 protein argonaute; Provisional 100.0
KOG1041 876 consensus Translation initiation factor 2C (eIF-2C 100.0
KOG1042 845 consensus Germ-line stem cell division protein Hiw 100.0
cd04657 426 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaut 100.0
cd04658 448 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain 100.0
cd02826 393 Piwi-like Piwi-like: PIWI domain. Domain found in 100.0
PF02170135 PAZ: PAZ domain; InterPro: IPR003100 This domain i 99.9
PF02171 302 Piwi: Piwi domain; InterPro: IPR003165 This domain 99.84
cd02846114 PAZ_argonaute_like PAZ domain, argonaute_like subf 99.81
cd02825115 PAZ PAZ domain, named PAZ after the proteins Piwi 99.8
cd02845117 PAZ_piwi_like PAZ domain, Piwi_like subfamily. In 99.79
cd04659 404 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI 99.52
cd02844135 PAZ_CAF_like PAZ domain, CAF_like subfamily. CAF ( 99.48
PF0869952 DUF1785: Domain of unknown function (DUF1785); Int 99.17
cd02843122 PAZ_dicer_like PAZ domain, dicer_like subfamily. D 98.77
COG1431 685 Argonaute homolog, implicated in RNA metabolism [T 88.59
>PLN03202 protein argonaute; Provisional Back     alignment and domain information 
Probab=100.00  E-value=4.6e-106  Score=936.65  Aligned_cols=600  Identities=64%  Similarity=1.023  Sum_probs=515.2

Q ss_pred             CCCCCCeEEEEeeEEEEEecCCCceEEEEc---c-----------ccHHHHHHHHHhccccccCCceeeeCCceeEEccC
Q 036169            2 SGSKGEITSLLSNHFKVSITGASGHIFHYS---G-----------IRRKIIDKVCETNSADLAEKDIAYDGEKSLFTIGA   67 (619)
Q Consensus         2 ~Gt~G~~v~L~tN~f~i~~~~~~~~iy~Y~---~-----------~~r~i~~~l~~~~~~~~~~~~~~yDG~~~lys~~~   67 (619)
                      +||.|++|.|+||||+|.+..++..+||||   .           ..+.|++++++++...+.+..+||||+++|||+++
T Consensus        39 ~Gt~G~~i~l~aN~f~v~~~~~~~~ly~Y~V~i~p~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~Dg~~~l~s~~~  118 (900)
T PLN03202         39 FGSKGQKIQLLTNHFKVSVNNPDGHFFHYSVSLTYEDGRPVDGKGIGRKVIDKVQETYSSDLAGKDFAYDGEKSLFTVGA  118 (900)
T ss_pred             CCCCCCEEEEEeeEEEEeccCCCCcEEEEEEEeccCCCCcccchhhhHHHHHHHHHhhHHhhCCCceeecCccceEECcc
Confidence            599999999999999999865577899999   1           14678888887765556566899999999999999


Q ss_pred             CCCCCCceEEecCCCC------CCCCCCCCCCcchhhhh-hccCCCCeeEEEEecccccChHHHHHHhcCCCCcchHHHH
Q 036169           68 LPHKKNGVPDLSQTTS------NDSPDGHGSNNERDKKR-RRVSQSKTFKVEISFPAKIPLPAIAAALHGQESQNSREAF  140 (619)
Q Consensus        68 L~~~~~~~~v~~~~~~------~~~~~~~~~p~~~~~~~-~~~~~~~~~~v~I~~~~~i~~~~l~~~l~g~~~~~~~~~~  140 (619)
                      |+.+..++.|++..+.      .++|.+++.|++++.++ ++..+.+.|+|+|++++++++.+|.+||.|...+.+.+++
T Consensus       119 L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~i~~~~L~~~l~~~~~~~~~~~i  198 (900)
T PLN03202        119 LPQNKLEFTVVLEDVSSNRNNGNGSPVGNGSPNGGDRKRSRRPYQSKTFKVEISFAAKIPMQAIANALRGQESENSQDAL  198 (900)
T ss_pred             CCCCCceEEEEecccccccccccccccccCCccccccccccccCCCceEEEEEEEccccCHHHHHHHHcCCCCCCcHHHH
Confidence            9976667778776421      11121123332322222 2234578999999999999999999999999888889999


Q ss_pred             HHHHHHHhhcccccceeccccccccc-------ccc--ceeeeeeEEEEEecCeeeEeeecceeeeecCCcHHHHHHHhc
Q 036169          141 RVLDIILRQHAAKQMNLGVSLTLEVV-------FLD--LGCWGFHSSFQATQGGLSLNIDGSTTSIIKPGPLVDFLIANQ  211 (619)
Q Consensus       141 q~Lniil~~~~~~~~~~~~gr~f~~~-------~~~--e~~~G~~~Svr~~~~~l~LniD~s~~~f~~~~~l~d~i~~~~  211 (619)
                      |+||+|+|+.++...++.+||+||.+       .++  |+|+||++|||+++++++||+|+++++|+++++|+|+|.++.
T Consensus       199 q~lnivlr~~~~~~~~~~~gr~ff~~~~~~~~~l~~gle~~~G~~~Svr~~~~~l~LnvDvs~~~F~~~~~l~~~l~~~~  278 (900)
T PLN03202        199 RVLDIILRQHAAKQGCLLVRQSFFHNDPKNFVDLGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIVQPGPVVDFLIANQ  278 (900)
T ss_pred             HHHHHHHhhhhhhCCCceeccccCCCCCcccccCCCceEEeeeeeeEeeeccCceEEeeeeeeeeeecCCcHHHHHHHhc
Confidence            99999999999876788889999852       222  999999999999999999999999999999999999999876


Q ss_pred             CCCCchhhhHHHHHHHhcCcEEEEeecCceEEEeccCccCcccceeeccCCCCCCCCCccceEEeHHHHHHHhcCCcccc
Q 036169          212 NVHDCYQLHWAKAKRTLKNLRIRVHPFNREYRITGLSDSTCKRQMFSWKSGVKDRNGDVKCVDVTVFDYFVNHGRINLCF  291 (619)
Q Consensus       212 ~~~~~~~~~~~~l~~~Lkgl~V~~~~~~r~~~I~~i~~~~a~~~~F~~~~~~~~g~~~~~~~~itv~~Yf~~~Y~i~L~~  291 (619)
                      +.++....++.++.++|+|++|.++|+++.|+|.||++.++++.+|++++++.+| .+++++++||+|||+++||++|+|
T Consensus       279 ~~~~~~~~~~~~~~~~lkGl~V~t~~~~k~yrI~~i~~~~a~~~~F~~~~~~~~~-~~~~~~~iSv~dYfk~~Yni~l~~  357 (900)
T PLN03202        279 NVRDPFQIDWSKAKRMLKNLRVKVSPSNQEYKITGLSEKPCKEQTFSLKQRNGNG-NEVETVEITVYDYFVKHRGIELRY  357 (900)
T ss_pred             CcCCccchhHHHHHHHhcCCEEEEecCCceEEEeeccCCCCcceEEEcccCCccc-ccCCcceEEHHHHHHHHcCccccC
Confidence            6544333457789999999999999999999999999999999999876532211 122246899999999999999999


Q ss_pred             CC-CccEEEeCCCCCCcccccccEEEcCCCcccCcCCHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhcccCee
Q 036169          292 SG-DFPCIDVGKPRKPTYIPIEPCSLLSLQRYTKALTVFQRSALVEKSQQKPQEKMKIITDVMRSNKYDSEPMLRSCAIS  370 (619)
Q Consensus       292 ~p-~lPlv~~~~~~k~~y~P~Elc~i~~~Q~~~~~l~~~~~~~mi~~~~~~P~~R~~~i~~~~~~l~~~~~~~l~~~Gi~  370 (619)
                       | ++|||++|+..+++|||||||.|+|||+++.+|++.|+++|+++|+.+|.+|.+.|.++++.++++.+++|++|||+
T Consensus       358 -p~~lPlv~~g~~~~~~ylP~ElC~i~~~Q~~~~~l~~~q~~~mik~a~~~P~~R~~~i~~~~~~~~~~~~~~l~~fGi~  436 (900)
T PLN03202        358 -SGDLPCINVGKPKRPTYFPIELCSLVSLQRYTKALSTLQRSSLVEKSRQKPQERMKVLTDALKSSNYDADPMLRSCGIS  436 (900)
T ss_pred             -CCCCCEEEcCCCCCCeEEcceeeEccCCceechhCCHHHHHHHHHHHccCHHHHHHHHHHHHHHhCCCCchHHHHCCcE
Confidence             6 99999999988999999999999999999999999999999999999999999999999999998888999999999


Q ss_pred             ecCceeEEeeEEcCCCeeEe------ccCCCcceecccEeeeccccceEEEEEeCCchhHHHHHHHHHHHHHhcCCcCh-
Q 036169          371 INSRFAKVEGRILSAPRGAY------HPKNGRWSFHNKIFVQAAKIDHWAVVNFSARYDIRSLCRDLIRFGEMKGIVTP-  443 (619)
Q Consensus       371 i~~~~~~v~~rvL~~P~i~~------~p~~g~W~~~~~kf~~~a~i~~w~vv~~~~~~~~~~f~~~l~~~~~~~G~~i~-  443 (619)
                      |+++|++|+||+|+||+|.+      .|.+|+|++++.+|++|+++.+|+|+++.++.+++.|++.|.+.|+.+||.+. 
T Consensus       437 i~~~~~~V~gRvL~~P~I~y~~~~~~~p~~g~Wn~~~~kf~~~~~l~~W~vv~~~~~~~~~~f~~~l~~~~~~~G~~i~~  516 (900)
T PLN03202        437 ISSQFTQVEGRVLPAPKLKVGNGEDFFPRNGRWNFNNKKLVEPTKIERWAVVNFSARCDIRHLVRDLIKCGEMKGINIEP  516 (900)
T ss_pred             ecCCceEEeEEEcCCceeecCCCcccCCCCCceecCCCEecCCCccceEEEEEecCchhHHHHHHHHHHHHHHCCceeCC
Confidence            99999999999999999995      36789999999999999999999999887666899999999999999999872 


Q ss_pred             -----------------HhHHHHHHHHHHhccCCCeEEEEEcCCCCCchhHHHHhhhhccccCceeeEeccccCCHHHHH
Q 036169          444 -----------------VRADRMFVQMKQKFEKCPCFLLCLLPDKKDSDLYGSWKRKTLSEFGIFNQCLAPTKVNEHDLM  506 (619)
Q Consensus       444 -----------------~~~~~~~~~l~~~~~~~~~lv~~ilp~~k~~~~Y~~iK~~~~~~~gV~TQcv~~~k~~~q~~~  506 (619)
                                       ++++++++++++.....++|+|||||++++.++|+.||++||.++||+||||...+.++||++
T Consensus       517 p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~qlv~vIlp~~~~~~~Y~~IK~~~~~~~gV~TQcv~~~~~~~q~~~  596 (900)
T PLN03202        517 PFDVFEENPQFRRAPPPVRVEKMFEQIQSKLPGPPQFLLCILPERKNSDIYGPWKKKNLSEFGIVTQCIAPTRVNDQYLT  596 (900)
T ss_pred             CccccccccccccccchHHHHHHHHHHHHhccCCCeEEEEEEcCCCCcchHHHHHHHHhhccCcccEEeCccccchHHHH
Confidence                             246788888888776679999999997346889999999999999999999977778999999


Q ss_pred             HHHHHHHhcCcccccCccccCCCccccccccccCCCCCccCCCeEEEeeeeccCCCCCCCCCeEEEEEecccccCCCccc
Q 036169          507 NVLLKINANCQRELTDPLILLGGLNSLLAIEQSKNLPLVSKVPTIIFGMDVSHGSPGHSNVPSVATVGCNSFSRNWPILS  586 (619)
Q Consensus       507 NI~lKiN~K~~~~~~~~~~~lGG~n~~l~~~~~~~lp~l~~~~tMiiG~DV~Hp~~g~~~~pSva~~v~n~~S~d~~~~~  586 (619)
                      |||||||+|           |||+||.++.+....+|++.+.+|||||+||+||+||....|||||||   ||+|++.++
T Consensus       597 NIalKiN~K-----------LGG~n~~~~~~~~~~i~~~~~~~tMivG~DVtHp~~g~~~~pSiaa~V---aS~d~~~~~  662 (900)
T PLN03202        597 NVLLKINAK-----------LGGLNSLLAIEHSPSIPLVSKVPTIILGMDVSHGSPGQSDVPSIAAVV---SSRQWPLIS  662 (900)
T ss_pred             HHHHHHhhh-----------hCCcceeecccccccCccccCCCeEEEEEEeecCCCCCCCCCceEEEE---eccCccccc
Confidence            999999999           999999987654455788877899999999999999865579999999   999976799


Q ss_pred             eeeeEEEecCCccccccccCCCCCCCCCCCc
Q 036169          587 RYRASVRSQSAKLEMTDSLFKPLPNKDDAAI  617 (619)
Q Consensus       587 ~y~~~~~~Q~~~~Eii~~l~~~~~~~~~~~~  617 (619)
                      +|++.+++|.+++|+|++|+.++.+....+|
T Consensus       663 ~y~s~~~~Q~~~~E~i~~l~~~~~~~~~~~m  693 (900)
T PLN03202        663 RYRASVRTQSPKVEMIDSLFKPVGDKDDDGI  693 (900)
T ss_pred             ceeeEEEecCCCceeeeehhccccccchHHH
Confidence            9999999999999999999776655444444

>KOG1041 consensus Translation initiation factor 2C (eIF-2C) and related proteins [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1042 consensus Germ-line stem cell division protein Hiwi/Piwi; negative developmental regulator [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily Back     alignment and domain information
>cd04658 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes Back     alignment and domain information
>cd02826 Piwi-like Piwi-like: PIWI domain Back     alignment and domain information
>PF02170 PAZ: PAZ domain; InterPro: IPR003100 This domain is named after the proteins Piwi Argonaut and Zwille Back     alignment and domain information
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster [] Back     alignment and domain information
>cd02846 PAZ_argonaute_like PAZ domain, argonaute_like subfamily Back     alignment and domain information
>cd02825 PAZ PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille Back     alignment and domain information
>cd02845 PAZ_piwi_like PAZ domain, Piwi_like subfamily Back     alignment and domain information
>cd04659 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria Back     alignment and domain information
>cd02844 PAZ_CAF_like PAZ domain, CAF_like subfamily Back     alignment and domain information
>PF08699 DUF1785: Domain of unknown function (DUF1785); InterPro: IPR014811 This region is found in argonaute [] proteins and often co-occurs with IPR003103 from INTERPRO and IPR003165 from INTERPRO Back     alignment and domain information
>cd02843 PAZ_dicer_like PAZ domain, dicer_like subfamily Back     alignment and domain information
>COG1431 Argonaute homolog, implicated in RNA metabolism [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query619
4f3t_A 861 Human Argonaute-2 - Mir-20a Complex Length = 861 7e-34
4ei1_A 859 Crystal Structure Of Human Argonaute2 Length = 859 8e-34
1r4k_A169 Solution Structure Of The Drosophila Argonaute 1 Pa 5e-10
3vnb_A155 Structural Insights Into Small Rna Sorting And Mrna 4e-08
1si2_A149 Crystal Structure Of The Paz Domain Of Human Eif2c1 8e-06
4g0o_A139 Crystal Structure Of Arabidopsis Thaliana Ago5 Mid 8e-06
1si3_A149 Crystal Structure Of The Paz Domain Of Human Eif2c1 4e-05
4g0p_A147 Crystal Structure Of Arabidopsis Thaliana Ago1 Mid 1e-04
3vna_A154 Structural Insights Into Small Rna Sorting And Mrna 1e-04
4g0x_A147 Crystal Structure Of Arabidopsis Thaliana Ago1 Mid 8e-04
>pdb|4F3T|A Chain A, Human Argonaute-2 - Mir-20a Complex Length = 861 Back     alignment and structure 
Iteration: 1

 Score =  142 bits (357), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 154/666 (23%), Positives = 265/666 (39%), Gaps = 118/666 (17%)
Query: 3   GSKGEITSLLSNHFKVSITGASGHIFHYS----------GIRRKIIDKVCETNSADL-AE 51
           G+ G    L +N F++ I      I+HY            + R+I++ + +     +  +
Sbjct: 34  GTSGRTIKLQANFFEMDIPKID--IYHYELDIKPEKCPRRVNREIVEHMVQHFKTQIFGD 91
Query: 52  KDIAYDGEKSLFTIGALPHKKNGVPDLSQTTSNDSPDGHGSNNERDKKRRRVSQSKTFKV 111
           +   +DG K+L+T   LP  ++ V +L  T   +  D                  + FKV
Sbjct: 92  RKPVFDGRKNLYTAMPLPIGRDKV-ELEVTLPGEGKD------------------RIFKV 132
Query: 112 EISFXXXXXXXXXXXXXHGQESQNSREAFRVLDIILRQHAAKQMN-LGVSLTLEVVFLDL 170
            I +              G+      E  + LD+++R   + +   +G S          
Sbjct: 133 SIKWVSCVSLQALHDALSGRLPSVPFETIQALDVVMRHLPSMRYTPVGRSFFTA----SE 188
Query: 171 GC-----------WGFHSSFQATQGGLSLNIDGSTTSIIKPGPLVDFL--------IANQ 211
           GC           +GFH S + +   + LNID S T+  K  P+++F+        I  Q
Sbjct: 189 GCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQ 248
Query: 212 N--VHDCYQLHWAKAKRTLKNLRIRVHPFNREYRITGLSDSTCKRQMFSWKSGVKDRNGD 269
              + D  ++ + K  + LK          R+YR+  ++      Q F     ++  +G 
Sbjct: 249 QKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFP----LQQESG- 303
Query: 270 VKCVDVTVFDYFVNHGRINLCFSGDFPCIDVGKPRKPTYIPIEPCSLLSLQRYTKALTVF 329
            + V+ TV  YF +  ++ L +    PC+ VG+ +K TY+P+E C++++ QR  K LT  
Sbjct: 304 -QTVECTVAQYFKDRHKLVLRYP-HLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDN 361
Query: 330 QRSALVEKSQQKPQEKMKIITDVMRSNKYDSEPMLRSCAISINSRFAKVEGRILSAPRGA 389
           Q S ++  + +   ++ + I+ +MRS  ++++P +R   I +      V GR+L  P   
Sbjct: 362 QTSTMIRATARSAPDRQEEISKLMRSASFNTDPYVREFGIMVKDEMTDVTGRVLQPPSIL 421
Query: 390 Y--------HPKNGRWSFHNKIFVQAAKIDHWAVVNFSAR-----YDIRSLCRDLIRFGE 436
           Y         P  G W   NK F    +I  WA+  F+ +       ++S    L +   
Sbjct: 422 YGGRNKAIATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISR 481
Query: 437 MKGIVTPVRADRMFVQMKQKFEKC-PCF------------LLCLLPDKKDSDLYGSWKRK 483
             G+  P++    F +  Q  +   P F            ++ +LP K  + +Y   KR 
Sbjct: 482 DAGM--PIQGQPCFCKYAQGADSVEPMFRHLKNTYAGLQLVVVILPGK--TPVYAEVKRV 537
Query: 484 TLSEFGIFNQCLAPTKVNE---HDLMNVLLKINANCQRELTDPXXXXXXXXXXXAIEQSK 540
             +  G+  QC+    V       L N+ LKIN                      I   +
Sbjct: 538 GDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKL--------------GGVNNILLPQ 583
Query: 541 NLPLVSKVPTIIFGMDVSHGSPGHSNVPSV-ATVGCNSFSRNWPILSRYRASVRSQSAKL 599
             P V + P I  G DV+H   G    PS+ A VG      N     RY A+VR Q  + 
Sbjct: 584 GRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPN-----RYCATVRVQQHRQ 638
Query: 600 EMTDSL 605
           E+   L
Sbjct: 639 EIIQDL 644
>pdb|4EI1|A Chain A, Crystal Structure Of Human Argonaute2 Length = 859 Back     alignment and structure
>pdb|1R4K|A Chain A, Solution Structure Of The Drosophila Argonaute 1 Paz Domain Length = 169 Back     alignment and structure
>pdb|3VNB|A Chain A, Structural Insights Into Small Rna Sorting And Mrna Binding By Arabidopsis Ago Domains Length = 155 Back     alignment and structure
>pdb|1SI2|A Chain A, Crystal Structure Of The Paz Domain Of Human Eif2c1 In Complex With A 9-Mer Sirna-Like Duplex Of Deoxynucleotide Overhang Length = 149 Back     alignment and structure
>pdb|4G0O|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago5 Mid Domain Length = 139 Back     alignment and structure
>pdb|1SI3|A Chain A, Crystal Structure Of The Paz Domain Of Human Eif2c1 In Complex With A 9-Mer Sirna-Like Duplex Length = 149 Back     alignment and structure
>pdb|4G0P|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain In Complex With Ump Length = 147 Back     alignment and structure
>pdb|3VNA|A Chain A, Structural Insights Into Small Rna Sorting And Mrna Binding By Arabidopsis Ago Mid Domains Length = 154 Back     alignment and structure
>pdb|4G0X|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain Length = 147 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query619
4f3t_A 861 Protein argonaute-2; hydrolase/gene regulation, RN 1e-103
4f1n_A 1046 Kpago; argonaute, RNAI, RNAse H, RNA binding prote 5e-81
1yvu_A 706 Hypothetical protein AQ_1447; RNAse H fold, RNA bi 2e-36
3ho1_A 685 Argonaute; argonaute, protein-DNA-RNA complex, nuc 1e-33
2yha_A 388 Post-transcriptional gene silencing protein QDE-2; 5e-27
2yhb_A 437 QDE-2, post-transcriptional gene silencing protein 2e-26
1vyn_A143 Argonaute2; nucleic acid binding, RNA interference 2e-22
3mj0_A124 Protein argonaute-2; argonaut, PAZ domain, 3'-END 1e-21
4g0o_A139 Protein argonaute 5; MID domain, small RNA 5' nucl 4e-19
4g0x_A147 Protein argonaute 1; MID domain, small RNA 5' nucl 1e-18
4g0m_A150 Protein argonaute 2; MID domain, small RNA 5' nucl 2e-17
3luc_A138 Protein argonaute-2; MID domain, ribonucleoprotein 2e-17
2w42_A 427 PIWI, putative uncharacterized protein; RNAI, RISC 1e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
1u04_A 771 Argonaute, hypothetical protein PF0537; RNAI, sile 5e-10
1qzv_F154 Plant photosystem I: subunit PSAF; photosynthesis, 1e-04
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A Length = 861 Back     alignment and structure
 Score =  331 bits (850), Expect = e-103
 Identities = 152/660 (23%), Positives = 268/660 (40%), Gaps = 106/660 (16%)

Query: 3   GSKGEITSLLSNHFKVSITGASGHIFHYS----------GIRRKIIDKVCETNSAD-LAE 51
           G+ G    L +N F++ I      I+HY            + R+I++ + +        +
Sbjct: 34  GTSGRTIKLQANFFEMDIP--KIDIYHYELDIKPEKCPRRVNREIVEHMVQHFKTQIFGD 91

Query: 52  KDIAYDGEKSLFTIGALPHKKNGVPDLSQTTSNDSPDGHGSNNERDKKRRRVSQSKTFKV 111
           +   +DG K+L+T   LP  ++ V +L  T   +  D                  + FKV
Sbjct: 92  RKPVFDGRKNLYTAMPLPIGRDKV-ELEVTLPGEGKD------------------RIFKV 132

Query: 112 EISFPAKIPLPAIAAALHGQESQNSREAFRVLDIILRQHAAKQMNLGVS---LTLEVVFL 168
            I + + + L A+  AL G+      E  + LD+++R   + +            E    
Sbjct: 133 SIKWVSCVSLQALHDALSGRLPSVPFETIQALDVVMRHLPSMRYTPVGRSFFTASEGCSN 192

Query: 169 DLG-----CWGFHSSFQATQGGLSLNIDGSTTSIIKPGPLVDFLIANQNVHDCYQL---- 219
            LG      +GFH S + +   + LNID S T+  K  P+++F+    +     +     
Sbjct: 193 PLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPL 252

Query: 220 ---HWAKAKRTLKNLRIRVH---PFNREYRITGLSDSTCKRQMFSWKSGVKDRNGDVKCV 273
                 K  + +K L++ +       R+YR+  ++      Q F  +          + V
Sbjct: 253 TDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQ------QESGQTV 306

Query: 274 DVTVFDYFVNHGRINLCFSGDFPCIDVGKPRKPTYIPIEPCSLLSLQRYTKALTVFQRSA 333
           + TV  YF +  ++ L +    PC+ VG+ +K TY+P+E C++++ QR  K LT  Q S 
Sbjct: 307 ECTVAQYFKDRHKLVLRYP-HLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTST 365

Query: 334 LVEKSQQKPQEKMKIITDVMRSNKYDSEPMLRSCAISINSRFAKVEGRILSAPRGAYH-- 391
           ++  + +   ++ + I+ +MRS  ++++P +R   I +      V GR+L  P   Y   
Sbjct: 366 MIRATARSAPDRQEEISKLMRSASFNTDPYVREFGIMVKDEMTDVTGRVLQPPSILYGGR 425

Query: 392 ------PKNGRWSFHNKIFVQAAKIDHWAVVNFSAR-----YDIRSLCRDLIRFGEMKGI 440
                 P  G W   NK F    +I  WA+  F+ +       ++S    L +     G+
Sbjct: 426 NKAIATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGM 485

Query: 441 V------------TPVRADRMFVQMKQKFEKCPCFLLCLLPDKKDSDLYGSWKRKTLSEF 488
                             + MF  +K  +      ++ +LP K    +Y   KR   +  
Sbjct: 486 PIQGQPCFCKYAQGADSVEPMFRHLKNTYAG-LQLVVVILPGKT--PVYAEVKRVGDTVL 542

Query: 489 GIFNQCLAP---TKVNEHDLMNVLLKINANCQRELTDPLILLGGLNSLLAIEQSKNLPLV 545
           G+  QC+      +     L N+ LKIN             LGG+N++L     +  P V
Sbjct: 543 GMATQCVQMKNVQRTTPQTLSNLCLKINVK-----------LGGVNNIL---LPQGRPPV 588

Query: 546 SKVPTIIFGMDVSHGSPGHSNVPSVATVGCNSFSRNWPILSRYRASVRSQSAKLEMTDSL 605
            + P I  G DV+H   G    PS+A       S +    +RY A+VR Q  + E+   L
Sbjct: 589 FQQPVIFLGADVTHPPAGDGKKPSIA---AVVGSMD-AHPNRYCATVRVQQHRQEIIQDL 644
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora} Length = 1046 Back     alignment and structure
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A Length = 706 Back     alignment and structure
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A Length = 685 Back     alignment and structure
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A Length = 388 Back     alignment and structure
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa} Length = 437 Back     alignment and structure
>3mj0_A Protein argonaute-2; argonaut, PAZ domain, 3'-END 2'-O-methylated ssRNA, RNA-RNA protein complex; HET: OMU; 2.31A {Drosophila melanogaster} PDB: 1t2r_A 1t2s_A Length = 124 Back     alignment and structure
>4g0o_A Protein argonaute 5; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.19A {Arabidopsis thaliana} Length = 139 Back     alignment and structure
>4g0x_A Protein argonaute 1; MID domain, small RNA 5' nucleotide recognition, gene regula; 1.35A {Arabidopsis thaliana} PDB: 4g0q_A* 4g0p_A 4g0y_A* 4g0z_A* Length = 147 Back     alignment and structure
>4g0m_A Protein argonaute 2; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.31A {Arabidopsis thaliana} Length = 150 Back     alignment and structure
>3luc_A Protein argonaute-2; MID domain, ribonucleoprotein, RNA-binding, RNA-mediated GEN silencing, translation regulation, RNA binding protein; 1.69A {Homo sapiens} PDB: 3lud_A* 3lug_A 3luh_A 3luj_A* 3luk_A 3qx8_A* 3qx9_A* Length = 138 Back     alignment and structure
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A Length = 427 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A Length = 771 Back     alignment and structure
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query619
4f3t_A 861 Protein argonaute-2; hydrolase/gene regulation, RN 100.0
4f1n_A 1046 Kpago; argonaute, RNAI, RNAse H, RNA binding prote 100.0
1yvu_A 706 Hypothetical protein AQ_1447; RNAse H fold, RNA bi 100.0
1u04_A 771 Argonaute, hypothetical protein PF0537; RNAI, sile 100.0
3ho1_A 685 Argonaute; argonaute, protein-DNA-RNA complex, nuc 100.0
2yha_A 388 Post-transcriptional gene silencing protein QDE-2; 100.0
2yhb_A 437 QDE-2, post-transcriptional gene silencing protein 100.0
1vyn_A143 Argonaute2; nucleic acid binding, RNA interference 99.94
4g0o_A139 Protein argonaute 5; MID domain, small RNA 5' nucl 99.92
2xfm_A150 MIWI, PIWI-like protein 1; RNA-protein complex, di 99.91
4g0x_A147 Protein argonaute 1; MID domain, small RNA 5' nucl 99.91
3luc_A138 Protein argonaute-2; MID domain, ribonucleoprotein 99.9
3qir_A148 PIWI-like protein 2; structural genomics consortiu 99.89
4g0m_A150 Protein argonaute 2; MID domain, small RNA 5' nucl 99.89
3mj0_A124 Protein argonaute-2; argonaut, PAZ domain, 3'-END 99.89
3o7v_X124 PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, 99.85
1r6z_P509 Chimera of maltose-binding periplasmic protein AN 99.81
2w42_A 427 PIWI, putative uncharacterized protein; RNAI, RISC 99.69
2qvw_A 756 GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral 98.84
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A Back     alignment and structure
Probab=100.00  E-value=6.7e-104  Score=918.10  Aligned_cols=560  Identities=26%  Similarity=0.483  Sum_probs=483.6

Q ss_pred             CCCCCCeEEEEeeEEEEEecCCCceEEEEc----------cccHHHHHHHHHhcc-ccccCCceeeeCCceeEEccCCCC
Q 036169            2 SGSKGEITSLLSNHFKVSITGASGHIFHYS----------GIRRKIIDKVCETNS-ADLAEKDIAYDGEKSLFTIGALPH   70 (619)
Q Consensus         2 ~Gt~G~~v~L~tN~f~i~~~~~~~~iy~Y~----------~~~r~i~~~l~~~~~-~~~~~~~~~yDG~~~lys~~~L~~   70 (619)
                      +||.|++|.|+||||+|+++  +..+||||          +.+|+|+++++++++ ..|++..+||||+++|||+++|+.
T Consensus        33 ~Gt~G~~i~l~aN~F~v~~~--~~~ly~Y~V~i~p~~~~~~~~r~i~~~l~~~~~~~~~~~~~~afDG~~~l~s~~~L~~  110 (861)
T 4f3t_A           33 FGTSGRTIKLQANFFEMDIP--KIDIYHYELDIKPEKCPRRVNREIVEHMVQHFKTQIFGDRKPVFDGRKNLYTAMPLPI  110 (861)
T ss_dssp             CCCCSEEEEEEESEEEEECC--SCEEEEEEEEEESCSCCHHHHHHHHHHHHHHSCCCCCTTCCCEECSSSEEEESSCCSC
T ss_pred             CCCCCcEEEEEeeeEEEECC--CCceeeeeEEeCCCcCcHHHHHHHHHHHHHHhhhhhhcCceEEEcCcceEEECCcCCC
Confidence            49999999999999999974  56899999          135677888888774 446666789999999999999997


Q ss_pred             CCCceEEecCCCCCCCCCCCCCCcchhhhhhccCCCCeeEEEEecccccChHHHHHHhcCCCCcchHHHHHHHHHHHhhc
Q 036169           71 KKNGVPDLSQTTSNDSPDGHGSNNERDKKRRRVSQSKTFKVEISFPAKIPLPAIAAALHGQESQNSREAFRVLDIILRQH  150 (619)
Q Consensus        71 ~~~~~~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~v~I~~~~~i~~~~l~~~l~g~~~~~~~~~~q~Lniil~~~  150 (619)
                      ++..+++.+....      +             .+.++|+|+|++++++++++|.+|++|...+.+.+++|+||||+|+.
T Consensus       111 ~~~~~~~~v~~~~------~-------------~~~~~~~V~I~~~~~i~l~~L~~~l~g~~~~~~~~~iq~Lniilr~~  171 (861)
T 4f3t_A          111 GRDKVELEVTLPG------E-------------GKDRIFKVSIKWVSCVSLQALHDALSGRLPSVPFETIQALDVVMRHL  171 (861)
T ss_dssp             SSCEEEEECCC--------------------------CEEEEEEEEEEEEHHHHHHHHHTCSSSCCHHHHHHHHHHHHHH
T ss_pred             CCcceEEEEecCC------C-------------CCCcEEEEEEEEeeecCHHHHHHHhcCCCCCCcHHHHHHHHHHHHhh
Confidence            5444444332110      0             13678999999999999999999999998888899999999999997


Q ss_pred             ccccceeccccccccc-------cc-c-ceeeeeeEEEEEecCeeeEeeecceeeeecCCcHHHHHHHhcCCCCc-----
Q 036169          151 AAKQMNLGVSLTLEVV-------FL-D-LGCWGFHSSFQATQGGLSLNIDGSTTSIIKPGPLVDFLIANQNVHDC-----  216 (619)
Q Consensus       151 ~~~~~~~~~gr~f~~~-------~~-~-e~~~G~~~Svr~~~~~l~LniD~s~~~f~~~~~l~d~i~~~~~~~~~-----  216 (619)
                      +. .++..+||+||.+       .+ + |+|+||++|||+++++++||+|+++++|+++++|+|+|.++++.++.     
T Consensus       172 ~~-~~~~~vGR~Ff~~~~~~~~~lg~Gle~w~G~~~Svr~~~~~l~LnvDvs~~~F~~~~~v~d~~~~~~~~~~~~~~~~  250 (861)
T 4f3t_A          172 PS-MRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQK  250 (861)
T ss_dssp             HH-HHSEEETTEEECCC---CCEEETTEEEEEEEEEEEEECSSSEEEEEEEEEEEEECCEEHHHHHHHHHTCSSCC---C
T ss_pred             cc-ccccccCCCccCCCCCceeccCCCEEEEeceeEEEEecCCccEEeecccceeEeeCCcHHHHHHHHhcccchhhhcc
Confidence            65 5689999999863       23 3 99999999999999999999999999999999999999988765432     


Q ss_pred             --hhhhHHHHHHHhcCcEEEEee---cCceEEEeccCccCcccceeeccCCCCCCCCCccceEEeHHHHHHHhcCCcccc
Q 036169          217 --YQLHWAKAKRTLKNLRIRVHP---FNREYRITGLSDSTCKRQMFSWKSGVKDRNGDVKCVDVTVFDYFVNHGRINLCF  291 (619)
Q Consensus       217 --~~~~~~~l~~~Lkgl~V~~~~---~~r~~~I~~i~~~~a~~~~F~~~~~~~~g~~~~~~~~itv~~Yf~~~Y~i~L~~  291 (619)
                        .+.++.+++++|+|++|.++|   ++|+|+|.||++.++++.+|.++..+      +++.++||+|||+++||++|+|
T Consensus       251 ~~~~~~~~~~~k~LkGl~V~~t~~~~~~r~yrI~~i~~~pa~~~~F~~~~~~------g~~~~iSV~dYFk~kYni~L~~  324 (861)
T 4f3t_A          251 PLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQES------GQTVECTVAQYFKDRHKLVLRY  324 (861)
T ss_dssp             CCCHHHHHHHHHHHTTCEEEESCC---CCEEEEEEEEEEETTTCEEEEECSS------SCEEEEEHHHHHHHHHCCCCSC
T ss_pred             ccCHHHHHHHHHHhCCcEEEEeecCCCCceEEEeeCCCCCCCCcEEEeecCC------CCceeEEHHHHHHHhcCcccCC
Confidence              233578899999999999999   46899999999988989999864321      2236899999999999999999


Q ss_pred             CCCccEEEeCCCCCCcccccccEEEcCCCcccCcCCHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCcchhcccCeee
Q 036169          292 SGDFPCIDVGKPRKPTYIPIEPCSLLSLQRYTKALTVFQRSALVEKSQQKPQEKMKIITDVMRSNKYDSEPMLRSCAISI  371 (619)
Q Consensus       292 ~p~lPlv~~~~~~k~~y~P~Elc~i~~~Q~~~~~l~~~~~~~mi~~~~~~P~~R~~~i~~~~~~l~~~~~~~l~~~Gi~i  371 (619)
                       |+||||++|++++++|||||||.|+|||+++++|+++|+++|+++|+..|.+|.+.|.++++.++++.+++|++|||+|
T Consensus       325 -p~lPll~~g~~~~~~ylP~Elc~i~~gQ~~~~~Lt~~q~s~mik~~~~~P~~R~~~I~~~~~~l~~~~~~~l~~fGi~i  403 (861)
T 4f3t_A          325 -PHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEISKLMRSASFNTDPYVREFGIMV  403 (861)
T ss_dssp             -TTSEEEEESCTTTTEEEEGGGEEECTTCBCCSCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCGGGCHHHHHTTCEE
T ss_pred             -CCCceEEecCCCCCccccceeEEeeCCccccccCCHHHHHHHHHHHccCHHHHHHHHHHHHHHhcCCCchHHHHCCCEE
Confidence             9999999998888999999999999999999999999999999999999999999999999999888889999999999


Q ss_pred             cCceeEEeeEEcCCCeeEe--------ccCCCcceecccEeeeccccceEEEEEeCCc-----hhHHHHHHHHHHHHHhc
Q 036169          372 NSRFAKVEGRILSAPRGAY--------HPKNGRWSFHNKIFVQAAKIDHWAVVNFSAR-----YDIRSLCRDLIRFGEMK  438 (619)
Q Consensus       372 ~~~~~~v~~rvL~~P~i~~--------~p~~g~W~~~~~kf~~~a~i~~w~vv~~~~~-----~~~~~f~~~l~~~~~~~  438 (619)
                      +++|++|+||+|+||+|.+        .|.+|+|++++++|++|+++++|++++++..     ..++.|++.|.+.|+.+
T Consensus       404 ~~~~~~v~gRvL~~P~I~y~~~~~~~~~~~~g~W~~~~~~f~~~~~l~~W~vv~~~~~~~~~~~~~~~f~~~L~~~~~~~  483 (861)
T 4f3t_A          404 KDEMTDVTGRVLQPPSILYGGRNKAIATPVQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDA  483 (861)
T ss_dssp             CSSCEEEEEEECCCCCEECCSSSCCEECCBTTBCCCTTCCCTBCCCBCCEEEEECSCTTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             eCCeeEEEEEEecCceEEecCCcccccCCCCCceeccCCEEccCcccceeEEEEecCcccccHHHHHHHHHHHHHHHhhC
Confidence            9999999999999999985        3578999999999999999999999998642     26899999999999999


Q ss_pred             CCcCh------------HhHHHHHHHHHHhccCCCeEEEEEcCCCCCchhHHHHhhhhccccCceeeEeccc---cCCHH
Q 036169          439 GIVTP------------VRADRMFVQMKQKFEKCPCFLLCLLPDKKDSDLYGSWKRKTLSEFGIFNQCLAPT---KVNEH  503 (619)
Q Consensus       439 G~~i~------------~~~~~~~~~l~~~~~~~~~lv~~ilp~~k~~~~Y~~iK~~~~~~~gV~TQcv~~~---k~~~q  503 (619)
                      ||.+.            ++++.+++.+++.. .+++|||||||+ + .+.|+.||++||+++||+||||+.+   |.++|
T Consensus       484 G~~i~~~p~~~~~~~~~~~~~~~~~~l~~~~-~~~qlvl~Ilp~-~-~~~Y~~IK~~~~~~~gI~TQcv~~~~~~k~~~q  560 (861)
T 4f3t_A          484 GMPIQGQPCFCKYAQGADSVEPMFRHLKNTY-AGLQLVVVILPG-K-TPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQ  560 (861)
T ss_dssp             TCCBCSCCSEEEECCSSSSHHHHHHHHHHHS-TTCCEEEEEESS-S-CTHHHHHHHHHHHTSCCEEEEEETHHHHSCCHH
T ss_pred             CcccCCCCeEEEecCchHHHHHHHHHHHhhc-CCCcEEEEEeCC-C-ccHHHHHHHHhcccCCcceEEEEecccccccHH
Confidence            99882            35788999988765 468999999997 4 6899999999999999999999874   57899


Q ss_pred             HHHHHHHHHHhcCcccccCccccCCCccccccccccCCCCCccCCCeEEEeeeeccCCCCCCCCCeEEEEEecccccCCC
Q 036169          504 DLMNVLLKINANCQRELTDPLILLGGLNSLLAIEQSKNLPLVSKVPTIIFGMDVSHGSPGHSNVPSVATVGCNSFSRNWP  583 (619)
Q Consensus       504 ~~~NI~lKiN~K~~~~~~~~~~~lGG~n~~l~~~~~~~lp~l~~~~tMiiG~DV~Hp~~g~~~~pSva~~v~n~~S~d~~  583 (619)
                      +++||+||||+|           |||+||.+.+.   ..|.+...+|||||+||+||++|+...|||||||   ||+| +
T Consensus       561 ~~~ni~lKiN~K-----------lGG~n~~l~~~---~~~~~~~~~tmiiG~DV~H~~~~~~~~pSiaa~v---aS~d-~  622 (861)
T 4f3t_A          561 TLSNLCLKINVK-----------LGGVNNILLPQ---GRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVV---GSMD-A  622 (861)
T ss_dssp             HHHHHHHHHHHH-----------TTCBCCEECST---TSCGGGGSCEEEEEEEEECCC----CCCEEEEEE---EECS-S
T ss_pred             HHHHHHHHHHHh-----------cCCcceecccc---ccccccCCceEEEEEEecccCCCCCCCceEEEEE---EEcC-C
Confidence            999999999999           99999998643   2355556899999999999999866789999999   9999 4


Q ss_pred             ccceeeeEEEecCCccccccccCCCCCC
Q 036169          584 ILSRYRASVRSQSAKLEMTDSLFKPLPN  611 (619)
Q Consensus       584 ~~~~y~~~~~~Q~~~~Eii~~l~~~~~~  611 (619)
                      .+++|++++++|.+++|+|++|.+|+..
T Consensus       623 ~~~~y~~~~~~Q~~~~E~i~~l~~~~~~  650 (861)
T 4f3t_A          623 HPNRYCATVRVQQHRQEIIQDLAAMVRE  650 (861)
T ss_dssp             SSCCEEEEEEEESTTCCSCTTHHHHHHH
T ss_pred             CcceEEEEEEEcCCCccHHHHHHHHHHH
Confidence            9999999999999999999999888653
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora} Back     alignment and structure
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A Back     alignment and structure
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A Back     alignment and structure
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A Back     alignment and structure
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A Back     alignment and structure
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa} Back     alignment and structure
>4g0o_A Protein argonaute 5; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.19A {Arabidopsis thaliana} Back     alignment and structure
>2xfm_A MIWI, PIWI-like protein 1; RNA-protein complex, differentiation, RNA interference; HET: OMU; NMR {Mus musculus} Back     alignment and structure
>4g0x_A Protein argonaute 1; MID domain, small RNA 5' nucleotide recognition, gene regula; 1.35A {Arabidopsis thaliana} PDB: 4g0q_A* 4g0p_A 4g0y_A* 4g0z_A* 3vna_A 3vnb_A Back     alignment and structure
>3luc_A Protein argonaute-2; MID domain, ribonucleoprotein, RNA-binding, RNA-mediated GEN silencing, translation regulation, RNA binding protein; 1.69A {Homo sapiens} PDB: 3lud_A* 3lug_A 3luh_A 3luj_A* 3luk_A 3qx8_A* 3qx9_A* Back     alignment and structure
>3qir_A PIWI-like protein 2; structural genomics consortium, SGC, PAZ domain, RNAI, RNA B RNA binding protein; 2.45A {Homo sapiens} PDB: 3o7x_A Back     alignment and structure
>4g0m_A Protein argonaute 2; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.31A {Arabidopsis thaliana} Back     alignment and structure
>3mj0_A Protein argonaute-2; argonaut, PAZ domain, 3'-END 2'-O-methylated ssRNA, RNA-RNA protein complex; HET: OMU; 2.31A {Drosophila melanogaster} SCOP: b.34.14.1 PDB: 1t2r_A 1t2s_A Back     alignment and structure
>3o7v_X PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, HIWI1, HILI, PAZ domain, RNA BI protein; HET: OMU; 2.10A {Homo sapiens} PDB: 2l5c_A 2l5d_A 3o3i_X 3o6e_X* Back     alignment and structure
>1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1 Back     alignment and structure
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A Back     alignment and structure
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 619
d1si2a_126 b.34.14.1 (A:) Eukaryotic translation initiation f 2e-23
d1yvua2 392 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 8e-18
d1t2sa_123 b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila 3e-14
d1w9ha1 316 c.55.3.10 (A:93-408) Hypothetical protein AF1318 { 2e-12
d1u04a2 447 c.55.3.10 (A:324-770) Argonaute homologue PF0537 { 7e-06
>d1si2a_ b.34.14.1 (A:) Eukaryotic translation initiation factor 2C 1, EIF2C1 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 Back     information, alignment and structure

class: All beta proteins
fold: SH3-like barrel
superfamily: PAZ domain
family: PAZ domain
domain: Eukaryotic translation initiation factor 2C 1, EIF2C1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.4 bits (232), Expect = 2e-23
 Identities = 28/131 (21%), Positives = 59/131 (45%), Gaps = 17/131 (12%)

Query: 201 GPLVDFLIANQNVHDCYQL-------HWAKAKRTLKNLRIRVHPFN---REYRITGLSDS 250
            P+++F+    ++ +  +           +  + +K L++ V       R+YR+  ++  
Sbjct: 3   QPVIEFMCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRR 62

Query: 251 TCKRQMFSWKSGVKDRNGDVKCVDVTVFDYFVNHGRINLCFSGDFPCIDVGKPRKPTYIP 310
               Q F        +    + V+ TV  YF     + L +    PC+ VG+ +K TY+P
Sbjct: 63  PASHQTFPL------QLESGQTVECTVAQYFKQKYNLQLKYP-HLPCLQVGQEQKHTYLP 115

Query: 311 IEPCSLLSLQR 321
           +E C++++ QR
Sbjct: 116 LEVCNIVAGQR 126
>d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]} Length = 392 Back     information, alignment and structure
>d1t2sa_ b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 123 Back     information, alignment and structure
>d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 316 Back     information, alignment and structure
>d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Length = 447 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query619
d1u04a1322 Argonaute homologue PF0537 {Pyrococcus furiosus [T 99.98
d1si2a_126 Eukaryotic translation initiation factor 2C 1, EIF 99.92
d1t2sa_123 Argonaute 2 {Fruit fly (Drosophila melanogaster) [ 99.89
d1u04a2 447 Argonaute homologue PF0537 {Pyrococcus furiosus [T 99.86
d1yvua2 392 Argonaute homologue Aq_1447 {Aquifex aeolicus [Tax 99.85
d1w9ha1 316 Hypothetical protein AF1318 {Archaeoglobus fulgidu 99.84
>d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
class: All beta proteins
fold: SH3-like barrel
superfamily: PAZ domain
family: PAZ domain
domain: Argonaute homologue PF0537
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.98  E-value=2.9e-33  Score=280.76  Aligned_cols=276  Identities=9%  Similarity=-0.029  Sum_probs=206.2

Q ss_pred             eEEEEeeEEEEEecCCCceEEEEc------cccHHHHHHHHHhccccccCCceeeeCCceeEEccCCCCCCCceEEecCC
Q 036169            8 ITSLLSNHFKVSITGASGHIFHYS------GIRRKIIDKVCETNSADLAEKDIAYDGEKSLFTIGALPHKKNGVPDLSQT   81 (619)
Q Consensus         8 ~v~L~tN~f~i~~~~~~~~iy~Y~------~~~r~i~~~l~~~~~~~~~~~~~~yDG~~~lys~~~L~~~~~~~~v~~~~   81 (619)
                      ++.+.+|+|+|....-+..+|+|+      ..+|.+...+++.+++.+ |..++||| ..||++.+|+.+.         
T Consensus         1 ~~~~~~N~~ki~~~~~p~~lyqYrV~f~P~~e~~~~r~~ll~~h~~~~-G~~~~fDg-~~l~~~kkL~~~~---------   69 (322)
T d1u04a1           1 KAIVVINLVKINKKIIPDKIYVYRLFNDPEEELQKEGYSIYRLAYENV-GIVIDPEN-LIIATTKELEYEG---------   69 (322)
T ss_dssp             EEEEEBSEEEBCGGGSCSCEEEEEC------------CCHHHHHHHTT-EEEEETTT-TEEEESSCCCCSS---------
T ss_pred             CeEEEEEEEEeecccCCceeEEEEecCCChhhhHHHHHHHHHHHHHhc-CeEEecCC-cEEecccccCcce---------
Confidence            578999999996431123699999      346777777888876555 57888999 5899999998531         


Q ss_pred             CCCCCCCCCCCCcchhhhhhccCCCCeeEEEEecccccChHHHHHHhcCCCCcchHHHHHHHHHHHhhcccccceecccc
Q 036169           82 TSNDSPDGHGSNNERDKKRRRVSQSKTFKVEISFPAKIPLPAIAAALHGQESQNSREAFRVLDIILRQHAAKQMNLGVSL  161 (619)
Q Consensus        82 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~v~I~~~~~i~~~~l~~~l~g~~~~~~~~~~q~Lniil~~~~~~~~~~~~gr  161 (619)
                                                ++.++++...+...             .+.+++|++|+++|..+...++..+||
T Consensus        70 --------------------------e~~~~~~~~~~~~~-------------~~~~~~q~~Nil~r~~m~~l~l~~iGR  110 (322)
T d1u04a1          70 --------------------------EFIPEGEISFSELR-------------NDYQSKLVLRLLKENGIGEYELSKLLR  110 (322)
T ss_dssp             --------------------------CCEEEEEECGGGSC-------------HHHHHHHHHHHHHHTTCSHHHHHHHHT
T ss_pred             --------------------------eEEEEEEEEcccCC-------------CcHHHHHHHHHHHHHHhhhcceeeecc
Confidence                                      12334444443322             246789999999999998888899999


Q ss_pred             ccccccc--c-ceeeeeeEEEEEecCeeeEeeecceeeeecCCcHHHHHHHhcCC---------CCchhhhHHHHHHHhc
Q 036169          162 TLEVVFL--D-LGCWGFHSSFQATQGGLSLNIDGSTTSIIKPGPLVDFLIANQNV---------HDCYQLHWAKAKRTLK  229 (619)
Q Consensus       162 ~f~~~~~--~-e~~~G~~~Svr~~~~~l~LniD~s~~~f~~~~~l~d~i~~~~~~---------~~~~~~~~~~l~~~Lk  229 (619)
                      +||+|..  + |+||||.+||+..+++++|++|++|++.+ ..||+|+|.++...         +...+ ....+.+.|.
T Consensus       111 nyydp~~~~~levwPGy~TSI~q~E~~ilLc~disHKVmR-~~Tvld~l~~~~~~~~~~~~~~~~~~~~-~~~~~~k~lv  188 (322)
T d1u04a1         111 KFRKPKTFGDYKVIPSVEMSVIKHDEDFYLVIHIIHQIQS-MKTLWELVNKDPKELEEFLMTHKENLML-KDIASPLKTV  188 (322)
T ss_dssp             TTSCCEEETTEEEEEEEEEEEEECSSCEEEEEEEEEEEEE-SSCHHHHTTTCHHHHHHHHHHSTTTCEE-EETTSTTCCE
T ss_pred             ccCCCCCccceEEcCCeeeeehhhcCceEEEEEeeeeEee-hhhHHHHHHHHHHhhhhhhhhhhhhhHH-HHhhhhhhee
Confidence            9998853  4 99999999999999999999999999887 59999999664321         00000 0123456789


Q ss_pred             CcEEEEeecCceEEEe---ccCccCcccceeeccCCCCCCCCCccceEEeHHHHHHHhcCCccccCCCccEEEeCCC---
Q 036169          230 NLRIRVHPFNREYRIT---GLSDSTCKRQMFSWKSGVKDRNGDVKCVDVTVFDYFVNHGRINLCFSGDFPCIDVGKP---  303 (619)
Q Consensus       230 gl~V~~~~~~r~~~I~---~i~~~~a~~~~F~~~~~~~~g~~~~~~~~itv~~Yf~~~Y~i~L~~~p~lPlv~~~~~---  303 (619)
                      |..|.++|+|++|++.   +++++.++..+|..+            ..+|+.|||+++||+   + .+||++..+.+   
T Consensus       189 G~iVLT~YNNkTy~~di~~dvd~~~~p~~t~~~~------------~~~s~ieYYk~~Yni---D-~~QPlLvs~~k~~~  252 (322)
T d1u04a1         189 YKPCFEEYTKKPKLDHNQEIVKYWYNYHIERYWN------------TPEAKLEFYRKFGQV---D-LKQPAILAKFASKI  252 (322)
T ss_dssp             EEECBCTTSSCBCEECCHHHHHHHHHHHHHHHCC------------SHHHHHHHHHHHCSC---C-TTSCEEEEEESCC-
T ss_pred             ceEEEeccCCcceecchhhcCCcccCccceeccC------------CcccHHHHHHHhcCC---C-CCCceEEEeccccc
Confidence            9999999999998665   566666666677543            346899999999997   5 89999987432   


Q ss_pred             ----CCCcccccccEEEcCCCcccCcCCHHH----HHHHHHHhcCChHHHHHHHHHHHHhcCC
Q 036169          304 ----RKPTYIPIEPCSLLSLQRYTKALTVFQ----RSALVEKSQQKPQEKMKIITDVMRSNKY  358 (619)
Q Consensus       304 ----~k~~y~P~Elc~i~~~Q~~~~~l~~~~----~~~mi~~~~~~P~~R~~~i~~~~~~l~~  358 (619)
                          ...+|++||||.+++       |++++    +++|..++...|.+|.+.+.++++.+..
T Consensus       253 ~~~~~~~i~LiPELc~lTG-------ltD~mR~dlMk~la~~Trl~P~~R~~~l~~f~~~l~~  308 (322)
T d1u04a1         253 KKNKNYKIYLLPQLVVPTY-------NAEQLESDVAKEILEYTKLMPEERKELLENILAEVDS  308 (322)
T ss_dssp             ----CCCEEECTTTEEEEE-------EGGGC----CCHHHHHHCCCHHHHHHHHHHHHHHCCC
T ss_pred             CCCCceEEEEchHhhhhcC-------CcHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence                235999999999997       55544    4578999999999999999999999854
>d1si2a_ b.34.14.1 (A:) Eukaryotic translation initiation factor 2C 1, EIF2C1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t2sa_ b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure