Citrus Sinensis ID: 036195

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180---
Protein Sequence
ALHLYRPHLRYIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGVLIGEEEWWNQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICIDVDDTGHNR
Secondary Structure (PSIPRED)
ccEEcccccccEEccccEEEEccccccccHHHHHHHHHHHHccccccEEEEEEcccccccccccccccEEEEccccccccccccccccccccEEEEEcccccccccccccccccccEEEcccccccccEEccccccccccccEEEccccccccccccccEEEEEccccccEEEEEEccccccc
Secondary Structure Prediction (SSPRO)
cccEEcHHHHHHHHcccEEEEccccHHHcHHHHHHHHHHHHHHHHHHHccccccHHccccccccHccEEEEEcccHHHHHHHcccccccccEEEEEEccccccccccccccccccEEEEccHHHHHHcccccHHHHHHccccEEEEccccccccccccccEEEEEccEEEEEEEEcccccccc
Coil and Loop (DISEMBL)
alhlyrphlryieddGVKIIGLygvrgvgkSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYffklpnlksichealafpcleriyvhgcpslrklpfslesgkrngvligeeewwnqlewddeatkhvfsskliittpqtvisipqpsytyeatirpryelicidvddtghnr
Flexible Loop (DISEMBL)
alhlyrphlryieddgVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHEALAFPCLERIYVHGCPSlrklpfslesgkrnGVLIGEEEWWNQLEWDDEATKHVFSSkliittpqtvisipqpsYTYEATIRPRYELICIdvddtghnr
Low Complexity Region (SEG)
ALHLYRPHLRYIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGVLIGEEEWWNQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICIDVDDTGHNR
Disordered region (IsUnstruct)
***LYRPHLRYIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGVLIGEEEWWNQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICIDVD******
Disordered Region (DISOPRED)
ALHLYRPHLRYIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIY*******ISVCSFILIRRAYFFKLPNLKSICHEALAFPCLERIYVHGCPSLRKLP***********LIGEEEWWNQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICIDVDDT****
Disordered Region (DISEMBL)
ALHLYRPHLRYIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGVLIGEEEWWNQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICIDVDDTGHNR
Disordered Region (DISPRO)
ALHLYRPHLRYIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSL*KKISVCSFILIRRAYFFKLPNLKSICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGVLIGEEEWWNQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICIDVDD*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
ALHLYRPHLRYIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGVLIGEEEWWNQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICIDVDDTGHNR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	183	2.2.26 [Sep-21-2011]
Q9C8T9	898	Putative disease resistan	yes	no	0.453	0.092	0.436	4e-12
O82484	892	Putative disease resistan	no	no	0.612	0.125	0.378	9e-11
P60838	894	Probable disease resistan	no	no	0.475	0.097	0.365	1e-09
O64973	889	Disease resistance protei	no	no	0.437	0.089	0.397	2e-09
Q9FLB4	874	Putative disease resistan	no	no	0.464	0.097	0.415	9e-09
Q9SI85	893	Probable disease resistan	no	no	0.355	0.072	0.463	2e-08
Q8RXS5	888	Probable disease resistan	no	no	0.338	0.069	0.476	2e-08
Q9SH22	884	Probable disease resistan	no	no	0.355	0.073	0.463	3e-08
Q9LVT3	948	Probable disease resistan	no	no	0.360	0.069	0.492	4e-08
P60839	884	Probable disease resistan	no	no	0.491	0.101	0.37	1e-07

>sp|Q9C8T9|DRL19_ARATH Putative disease resistance protein At1g63350 OS=Arabidopsis thaliana GN=At1g63350 PE=2 SV=1

 Score = 70.9 bits (172), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 38/87 (43%), Positives = 53/87 (60%), Gaps = 4/87 (4%)

Query: 57  KKISVCSFILIRRAYFFKLPNLKSICHEALAFPCLERIYVHGCPSLRKLPFSLESGKR-- 114
           +K  +  F  +   + + L  LK+I    L FPCLE+I V GCP+L+KLP   +SGK   
Sbjct: 784 EKSGIVPFPKLNELHLYNLRELKNIYWSPLPFPCLEKINVMGCPNLKKLPLDSKSGKHGG 843

Query: 115 NGVLIG--EEEWWNQLEWDDEATKHVF 139
           NG++I   E EW  ++EW+DEATK  F
Sbjct: 844 NGLIITHREMEWITRVEWEDEATKTRF 870

Potential disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|O82484|DRL23_ARATH Putative disease resistance protein At4g10780 OS=Arabidopsis thaliana GN=At4g10780 PE=2 SV=1

 Score = 66.6 bits (161), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 45/119 (37%), Positives = 64/119 (53%), Gaps = 7/119 (5%)

Query: 33  LIKQLNDMFSDMSHKFA--IYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHEALAFPC 90
           +I+QL  +   +SH  A  +     Q+   +  F  ++  +   LP LKSI   +L+FPC
Sbjct: 770 MIEQLEQLQELISHAKATGVTEEEQQQLHKIIPFQKLQILHLSSLPELKSIYWISLSFPC 829

Query: 91  LERIYVHGCPSLRKLPFSLES---GKRNGVLIGEEEWWNQLEWDDEATKHVF--SSKLI 144
           L  IYV  CP LRKLP   ++   GK+  +   E EW   +EW DEATK  F  S+KL+
Sbjct: 830 LSGIYVERCPKLRKLPLDSKTGTVGKKFVLQYKETEWIESVEWKDEATKLHFLPSTKLV 888

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P60838|DRL1_ARATH Probable disease resistance protein At1g12280 OS=Arabidopsis thaliana GN=At1g12280 PE=3 SV=1

 Score = 62.8 bits (151), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 55/93 (59%), Gaps = 6/93 (6%)

Query: 53  VSLQKKISVCSFILIRRAYFFKLPNL---KSICHEALAFPCLERIYVHGCPSLRKLPFSL 109
           ++ +K +++   I  ++    +L NL   +SI  + L+FPCL+ I++  CP LRKLP   
Sbjct: 785 INQEKAMTMSGIIPFQKLESLRLHNLAMLRSIYWQPLSFPCLKTIHITKCPELRKLPLDS 844

Query: 110 ESGKRNGVLI---GEEEWWNQLEWDDEATKHVF 139
           E   R+  L+    EEEW  ++EWD+EAT+  F
Sbjct: 845 EIAIRDEELVIKYQEEEWLERVEWDNEATRLRF 877

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O64973|RPS5_ARATH Disease resistance protein RPS5 OS=Arabidopsis thaliana GN=RPS5 PE=1 SV=2

 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 3/83 (3%)

Query: 60  SVCSFILIRRAYFFKLPNLKSICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGVLI 119
           ++  F  +   + F+L  LK I  +AL FPCL+ I+V  C  LRKLP   +SG     L+
Sbjct: 796 TIVPFRKLETLHLFELRGLKRIYAKALHFPCLKVIHVEKCEKLRKLPLDSKSGIAGEELV 855

Query: 120 ---GEEEWWNQLEWDDEATKHVF 139
              GE EW  ++EW+D+AT+  F
Sbjct: 856 IYYGEREWIERVEWEDQATQLRF 878

Disease resistance (R) protein that specifically recognizes the avrPphB type III effector avirulence protein from Pseudomonas syringae. Also confers resistance against Hyaloperonospora parasitica (downy mildew). Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Requires PBS1 to trigger the defense reaction against avrPphB. Probably triggers the defense mechanism when PBS1 is cleaved by avrPphB, suggesting that it detects indirectly the protease activity of avrPphB, and possibly binds to the cleaved RPS5.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLB4|DRL31_ARATH Putative disease resistance protein At5g05400 OS=Arabidopsis thaliana GN=At5g05400 PE=2 SV=1

 Score = 60.1 bits (144), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 45/89 (50%), Gaps = 4/89 (4%)

Query: 55  LQKKISVCSFILIRRAYFFKLPNL---KSICHEALAFPCLERIYVHGCPSLRKLPFSLES 111
           LQK   +   I  R   F  L NL   KSI  + L F  L+ I +  CP L KLP    S
Sbjct: 783 LQKTCELAGVIPFRELEFLTLRNLGQLKSIYRDPLLFGKLKEINIKSCPKLTKLPLDSRS 842

Query: 112 G-KRNGVLIGEEEWWNQLEWDDEATKHVF 139
             K+N V+  EEEW   L+W+D ATK  F
Sbjct: 843 AWKQNVVINAEEEWLQGLQWEDVATKERF 871

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SI85|DRL14_ARATH Probable disease resistance protein At1g62630 OS=Arabidopsis thaliana GN=At1g62630 PE=3 SV=2

 Score = 58.9 bits (141), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 41/69 (59%), Gaps = 4/69 (5%)

Query: 75  LPNLKSICHEALAFPCLERIYVHGCPSLRKLPFSLESGKR--NGVLI--GEEEWWNQLEW 130
           LP LK+I    L F CLE+I +  CP+LRKLP    SGK+  NG +I   +  W   ++W
Sbjct: 808 LPKLKNIYRRPLPFLCLEKITIGECPNLRKLPLDSRSGKQGENGCIIHYKDSRWLKGVKW 867

Query: 131 DDEATKHVF 139
            DEATK  F
Sbjct: 868 ADEATKKRF 876

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RXS5|DRL40_ARATH Probable disease resistance protein At5g63020 OS=Arabidopsis thaliana GN=At5g63020 PE=2 SV=2

 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 39/63 (61%), Gaps = 1/63 (1%)

Query: 78  LKSICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGVLI-GEEEWWNQLEWDDEATK 136
           LK I    L FPCL++I V+GC  LRKLP +  S  R  ++I   ++W   LEW+DEATK
Sbjct: 806 LKHIHRGPLPFPCLQKILVNGCSELRKLPLNFTSVPRGDLVIEAHKKWIEILEWEDEATK 865

Query: 137 HVF 139
             F
Sbjct: 866 ARF 868

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SH22|DRL20_ARATH Probable disease resistance protein At1g63360 OS=Arabidopsis thaliana GN=At1g63360 PE=2 SV=1

 Score = 58.2 bits (139), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 41/69 (59%), Gaps = 4/69 (5%)

Query: 75  LPNLKSICHEALAFPCLERIYVHGCPSLRKLPFSLESGKR--NGVLIGEEE--WWNQLEW 130
           LP LK I    L F CLE I +  CP+LRKLP    SGK+  NG +I  ++  W+  ++W
Sbjct: 806 LPKLKKIYWRPLPFLCLEEINIRECPNLRKLPLDSTSGKQGENGCIIRNKDSRWFEGVKW 865

Query: 131 DDEATKHVF 139
            DEATK  F
Sbjct: 866 ADEATKKRF 874

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVT3|DRL38_ARATH Probable disease resistance protein At5g47260 OS=Arabidopsis thaliana GN=At5g47260 PE=3 SV=2

 Score = 57.8 bits (138), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 41/67 (61%), Gaps = 1/67 (1%)

Query: 75  LPNLKSICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV-LIGEEEWWNQLEWDDE 133
           LP L+SI    L FP LE + +  CP LR+LPF+ ES   N V  I EE+    +EW+DE
Sbjct: 789 LPKLESIYWTPLPFPVLEYLVIRRCPELRRLPFNSESTIGNQVETIIEEQVIKIVEWEDE 848

Query: 134 ATKHVFS 140
           ATK  FS
Sbjct: 849 ATKQRFS 855

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P60839|DRL2_ARATH Probable disease resistance protein At1g12290 OS=Arabidopsis thaliana GN=At1g12290 PE=2 SV=1

 Score = 56.2 bits (134), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/100 (37%), Positives = 54/100 (54%), Gaps = 10/100 (10%)

Query: 56  QKKISVCSFILIRRA---YFFKLPNLKSICHEALAFPCLERIYVHG-CPSLRKLPFSLES 111
           Q+K S    +  R+    + + LP LKSI    L FPCL +I V   C  L KLP   +S
Sbjct: 782 QEKASTADIVPFRKLEYLHLWDLPELKSIYWNPLPFPCLNQINVQNKCRKLTKLPLDSQS 841

Query: 112 ----GKRNGVLIGEEEWWNQLEWDDEATKHVF--SSKLII 145
               G+   +  G+EEW  ++EW+D+AT+  F  S KL++
Sbjct: 842 CIVAGEELVIQYGDEEWKERVEWEDKATRLRFLPSCKLVL 881

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	183
255552975	1066	Disease resistance protein RPS5, putativ	0.437	0.075	0.469	1e-14
147787894	864	hypothetical protein VITISV_040594 [Viti	0.535	0.113	0.405	4e-13
225443158	903	PREDICTED: probable disease resistance p	0.415	0.084	0.467	5e-12
255574524	881	Disease resistance protein RFL1, putativ	0.437	0.090	0.451	7e-12
298204683	613	unnamed protein product [Vitis vinifera]	0.415	0.123	0.467	8e-12
147815260	2471	hypothetical protein VITISV_010987 [Viti	0.360	0.026	0.537	2e-11
224122896	820	cc-nbs-lrr resistance protein [Populus t	0.355	0.079	0.515	2e-11
356530068	900	PREDICTED: probable disease resistance p	0.377	0.076	0.486	2e-11
359494501	781	PREDICTED: probable disease resistance p	0.360	0.084	0.537	3e-11
359482672	905	PREDICTED: probable disease resistance p	0.415	0.083	0.467	5e-11

>gi|255552975|ref|XP_002517530.1| Disease resistance protein RPS5, putative [Ricinus communis] gi|223543162|gb|EEF44694.1| Disease resistance protein RPS5, putative [Ricinus communis]

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 38/81 (46%), Positives = 50/81 (61%)

Query: 64  FILIRRAYFFKLPNLKSICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGVLIGEEE 123
           F  + + Y  KLPNL  I H AL+FP LE+++V  CP LRKLPF   S     V+ GE  
Sbjct: 806 FSNLTKLYLVKLPNLHCIFHRALSFPSLEKMHVSECPKLRKLPFDSNSNNTLNVIKGERS 865

Query: 124 WWNQLEWDDEATKHVFSSKLI 144
           WW+ L+WD+E  K + SSK +
Sbjct: 866 WWDGLQWDNEGLKDLLSSKFV 886

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147787894|emb|CAN71751.1| hypothetical protein VITISV_040594 [Vitis vinifera]

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/101 (40%), Positives = 60/101 (59%), Gaps = 3/101 (2%)

Query: 39  DMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHEALAFPCLERIYVHG 98
           +  +++ HK    A +++  +S   F  + R Y   +P LKSI    L F CL++I+  G
Sbjct: 750 NSLTEVIHKGVAEAGNVRGILS--PFSKLERLYLSGVPELKSIYWNTLPFHCLKQIHABG 807

Query: 99  CPSLRKLPFSLESGKRNGVLI-GEEEWWNQLEWDDEATKHV 138
           CP L+KLP   E  K  G +I GEE+WWN+LEW+DEAT+  
Sbjct: 808 CPKLKKLPLXSECDKEGGXIISGEEDWWNKLEWEDEATQRA 848

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443158|ref|XP_002263674.1| PREDICTED: probable disease resistance protein At5g63020-like [Vitis vinifera]

 Score = 76.3 bits (186), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 36/77 (46%), Positives = 48/77 (62%), Gaps = 1/77 (1%)

Query: 64  FILIRRAYFFKLPNLKSICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGVLI-GEE 122
           F  +       LP LKSI    LAFPCL+ + VH CP L+KLP +  S K  G++I GE+
Sbjct: 820 FAKLEDLILIDLPKLKSIYRNTLAFPCLKEVRVHCCPKLKKLPLNSNSAKGRGMVIYGEK 879

Query: 123 EWWNQLEWDDEATKHVF 139
           +W N+LEW+DEA  + F
Sbjct: 880 DWRNELEWEDEAAHNAF 896

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574524|ref|XP_002528173.1| Disease resistance protein RFL1, putative [Ricinus communis] gi|223532385|gb|EEF34180.1| Disease resistance protein RFL1, putative [Ricinus communis]

 Score = 75.9 bits (185), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 37/82 (45%), Positives = 55/82 (67%), Gaps = 2/82 (2%)

Query: 64  FILIRRAYFFKLPNLKSICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGVLI-GEE 122
           F  ++R     L +L +IC +AL+FP LE+I V+ CP LRKLPF+ +S + +   I G+E
Sbjct: 797 FSQLKRLDLSYLSSLHTICRQALSFPSLEKITVYECPRLRKLPFNSDSARTSLKEIRGKE 856

Query: 123 EWWNQLEWDDEATKHVFSSKLI 144
            WWN L+WD+E  K +FSS+ +
Sbjct: 857 NWWNGLQWDEEV-KKIFSSRFV 877

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298204683|emb|CBI25181.3| unnamed protein product [Vitis vinifera]

 Score = 75.5 bits (184), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 36/77 (46%), Positives = 48/77 (62%), Gaps = 1/77 (1%)

Query: 64  FILIRRAYFFKLPNLKSICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGVLI-GEE 122
           F  +       LP LKSI    LAFPCL+ + VH CP L+KLP +  S K  G++I GE+
Sbjct: 530 FAKLEDLILIDLPKLKSIYRNTLAFPCLKEVRVHCCPKLKKLPLNSNSAKGRGMVIYGEK 589

Query: 123 EWWNQLEWDDEATKHVF 139
           +W N+LEW+DEA  + F
Sbjct: 590 DWRNELEWEDEAAHNAF 606

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147815260|emb|CAN74430.1| hypothetical protein VITISV_010987 [Vitis vinifera]

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/67 (53%), Positives = 42/67 (62%), Gaps = 1/67 (1%)

Query: 75   LPNLKSICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGVLI-GEEEWWNQLEWDDE 133
            LP LKSIC+  L  P L  IYVH C SLRKLPF   +GK +   I  E+ WW  L+W+DE
Sbjct: 2386 LPKLKSICNWVLPLPSLTMIYVHSCESLRKLPFDSNTGKNSLKKIQAEQSWWEGLQWEDE 2445

Query: 134  ATKHVFS 140
            A K  FS
Sbjct: 2446 AIKQSFS 2452

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122896|ref|XP_002318943.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222857319|gb|EEE94866.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/66 (51%), Positives = 46/66 (69%), Gaps = 1/66 (1%)

Query: 75  LPNLKSICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGVLI-GEEEWWNQLEWDDE 133
           LP LK I  +AL FP L+ I+V  CP+LRKLP +  S K + ++I G E+WW +LEW+DE
Sbjct: 746 LPKLKVIYPDALPFPSLKEIFVDDCPNLRKLPLNSNSAKEHRIVIQGWEDWWRRLEWEDE 805

Query: 134 ATKHVF 139
           A +H F
Sbjct: 806 AAQHTF 811

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530068|ref|XP_003533606.1| PREDICTED: probable disease resistance protein At5g63020-like [Glycine max]

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/72 (48%), Positives = 47/72 (65%), Gaps = 3/72 (4%)

Query: 75  LPNLKSICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV--LIGEEEWWNQLEWDD 132
           LP L+SIC + L FPCL+ I V  CP L KLPF   S  RN +  + G++ WW  L+W+D
Sbjct: 820 LPKLRSICSQVLRFPCLKEICVADCPRLLKLPFD-SSSARNSLKHINGQKNWWRNLKWED 878

Query: 133 EATKHVFSSKLI 144
           EAT+ +F SK +
Sbjct: 879 EATRDLFRSKYV 890

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494501|ref|XP_002266171.2| PREDICTED: probable disease resistance protein At5g63020-like [Vitis vinifera]

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 36/67 (53%), Positives = 42/67 (62%), Gaps = 1/67 (1%)

Query: 75  LPNLKSICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGVLI-GEEEWWNQLEWDDE 133
           LP LKSIC+  L  P L  IYVH C SLRKLPF   +GK +   I  E+ WW  L+W+DE
Sbjct: 696 LPKLKSICNWVLPLPSLTMIYVHSCESLRKLPFDSNTGKNSLKKIQAEQSWWEGLQWEDE 755

Query: 134 ATKHVFS 140
           A K  FS
Sbjct: 756 AIKQSFS 762

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482672|ref|XP_003632805.1| PREDICTED: probable disease resistance protein At1g12280-like [Vitis vinifera]

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 36/77 (46%), Positives = 50/77 (64%), Gaps = 1/77 (1%)

Query: 64  FILIRRAYFFKLPNLKSICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGVLI-GEE 122
           F+ ++      LP LKSI  +AL F  L  I+V  CP L+KLP S  S K N ++I G  
Sbjct: 820 FVKLQVLELDDLPQLKSIFWKALPFIYLNTIHVRNCPLLKKLPLSANSAKGNRIVIAGHN 879

Query: 123 EWWNQLEWDDEATKHVF 139
           +WWN++EW+DEAT++VF
Sbjct: 880 KWWNEVEWEDEATQNVF 896

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	183
TAIR|locus:2031366	898	AT1G63350 "AT1G63350" [Arabido	0.453	0.092	0.436	5.8e-21
TAIR|locus:2132741	892	AT4G10780 [Arabidopsis thalian	0.612	0.125	0.378	4.9e-18
TAIR|locus:2034765	884	AT1G12290 [Arabidopsis thalian	0.491	0.101	0.37	1.4e-17
TAIR|locus:2034770	894	SUMM2 "AT1G12280" [Arabidopsis	0.459	0.093	0.366	2.8e-17
TAIR|locus:2201996	889	RPS5 "AT1G12220" [Arabidopsis	0.420	0.086	0.4	4.5e-17
TAIR|locus:2031356	884	AT1G63360 [Arabidopsis thalian	0.382	0.079	0.460	1.5e-16
TAIR|locus:2153474	874	AT5G05400 [Arabidopsis thalian	0.464	0.097	0.415	1.8e-16
TAIR|locus:2203881	893	AT1G62630 [Arabidopsis thalian	0.355	0.072	0.463	6.5e-16
TAIR|locus:2166320	888	AT5G63020 [Arabidopsis thalian	0.338	0.069	0.476	1.3e-15
TAIR|locus:2008510	967	AT1G61190 "AT1G61190" [Arabido	0.475	0.089	0.361	3.5e-13

TAIR|locus:2031366 AT1G63350 "AT1G63350" [Arabidopsis thaliana (taxid:3702)]

 Score = 179 (68.1 bits), Expect = 5.8e-21, Sum P(2) = 5.8e-21
 Identities = 38/87 (43%), Positives = 53/87 (60%)

Query:    57 KKISVCSFILIRRAYFFKLPNLKSICHEALAFPCLERIYVHGCPSLRKLPFSLESGKR-- 114
             +K  +  F  +   + + L  LK+I    L FPCLE+I V GCP+L+KLP   +SGK   
Sbjct:   784 EKSGIVPFPKLNELHLYNLRELKNIYWSPLPFPCLEKINVMGCPNLKKLPLDSKSGKHGG 843

Query:   115 NGVLIG--EEEWWNQLEWDDEATKHVF 139
             NG++I   E EW  ++EW+DEATK  F
Sbjct:   844 NGLIITHREMEWITRVEWEDEATKTRF 870

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2132741 AT4G10780 [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 4.9e-18, Sum P(2) = 4.9e-18
 Identities = 45/119 (37%), Positives = 64/119 (53%)

Query:    33 LIKQLNDMFSDMSHKFA--IYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHEALAFPC 90
             +I+QL  +   +SH  A  +     Q+   +  F  ++  +   LP LKSI   +L+FPC
Sbjct:   770 MIEQLEQLQELISHAKATGVTEEEQQQLHKIIPFQKLQILHLSSLPELKSIYWISLSFPC 829

Query:    91 LERIYVHGCPSLRKLPFSLESG---KRNGVLIGEEEWWNQLEWDDEATKHVF--SSKLI 144
             L  IYV  CP LRKLP   ++G   K+  +   E EW   +EW DEATK  F  S+KL+
Sbjct:   830 LSGIYVERCPKLRKLPLDSKTGTVGKKFVLQYKETEWIESVEWKDEATKLHFLPSTKLV 888

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2034765 AT1G12290 [Arabidopsis thaliana (taxid:3702)]

 Score = 145 (56.1 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
 Identities = 37/100 (37%), Positives = 54/100 (54%)

Query:    56 QKKISVCSFILIRRA---YFFKLPNLKSICHEALAFPCLERIYVHG-CPSLRKLPFSLES 111
             Q+K S    +  R+    + + LP LKSI    L FPCL +I V   C  L KLP   +S
Sbjct:   782 QEKASTADIVPFRKLEYLHLWDLPELKSIYWNPLPFPCLNQINVQNKCRKLTKLPLDSQS 841

Query:   112 ----GKRNGVLIGEEEWWNQLEWDDEATKHVF--SSKLII 145
                 G+   +  G+EEW  ++EW+D+AT+  F  S KL++
Sbjct:   842 CIVAGEELVIQYGDEEWKERVEWEDKATRLRFLPSCKLVL 881

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2034770 SUMM2 "AT1G12280" [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 2.8e-17, Sum P(2) = 2.8e-17
 Identities = 33/90 (36%), Positives = 54/90 (60%)

Query:    53 VSLQKKISVCSFILIRRAYFFKLPNL---KSICHEALAFPCLERIYVHGCPSLRKLPFSL 109
             ++ +K +++   I  ++    +L NL   +SI  + L+FPCL+ I++  CP LRKLP   
Sbjct:   785 INQEKAMTMSGIIPFQKLESLRLHNLAMLRSIYWQPLSFPCLKTIHITKCPELRKLPLDS 844

Query:   110 ESGKRNGVLI---GEEEWWNQLEWDDEATK 136
             E   R+  L+    EEEW  ++EWD+EAT+
Sbjct:   845 EIAIRDEELVIKYQEEEWLERVEWDNEATR 874

GO:0006952 "defense response" evidence=IGI;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2201996 RPS5 "AT1G12220" [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 4.5e-17, Sum P(2) = 4.5e-17
 Identities = 32/80 (40%), Positives = 47/80 (58%)

Query:    60 SVCSFILIRRAYFFKLPNLKSICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGVLI 119
             ++  F  +   + F+L  LK I  +AL FPCL+ I+V  C  LRKLP   +SG     L+
Sbjct:   796 TIVPFRKLETLHLFELRGLKRIYAKALHFPCLKVIHVEKCEKLRKLPLDSKSGIAGEELV 855

Query:   120 ---GEEEWWNQLEWDDEATK 136
                GE EW  ++EW+D+AT+
Sbjct:   856 IYYGEREWIERVEWEDQATQ 875

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0006952 "defense response" evidence=IMP;TAS

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0008219 "cell death" evidence=IMP

GO:0038023 "signaling receptor activity" evidence=IMP

GO:0000166 "nucleotide binding" evidence=IMP

GO:0005622 "intracellular" evidence=ISS

TAIR|locus:2031356 AT1G63360 [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 1.5e-16, Sum P(2) = 1.5e-16
 Identities = 35/76 (46%), Positives = 45/76 (59%)

Query:    75 LPNLKSICHEALAFPCLERIYVHGCPSLRKLPFSLESGKR--NGVLIGEEE--WWNQLEW 130
             LP LK I    L F CLE I +  CP+LRKLP    SGK+  NG +I  ++  W+  ++W
Sbjct:   806 LPKLKKIYWRPLPFLCLEEINIRECPNLRKLPLDSTSGKQGENGCIIRNKDSRWFEGVKW 865

Query:   131 DDEATKHVF--SSKLI 144
              DEATK  F  S +LI
Sbjct:   866 ADEATKKRFLPSCQLI 881

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2153474 AT5G05400 [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 1.8e-16, Sum P(2) = 1.8e-16
 Identities = 37/89 (41%), Positives = 45/89 (50%)

Query:    55 LQKKISVCSFILIRRAYFFKLPNL---KSICHEALAFPCLERIYVHGCPSLRKLPFSLES 111
             LQK   +   I  R   F  L NL   KSI  + L F  L+ I +  CP L KLP    S
Sbjct:   783 LQKTCELAGVIPFRELEFLTLRNLGQLKSIYRDPLLFGKLKEINIKSCPKLTKLPLDSRS 842

Query:   112 G-KRNGVLIGEEEWWNQLEWDDEATKHVF 139
               K+N V+  EEEW   L+W+D ATK  F
Sbjct:   843 AWKQNVVINAEEEWLQGLQWEDVATKERF 871

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2203881 AT1G62630 [Arabidopsis thaliana (taxid:3702)]

 Score = 145 (56.1 bits), Expect = 6.5e-16, Sum P(2) = 6.5e-16
 Identities = 32/69 (46%), Positives = 41/69 (59%)

Query:    75 LPNLKSICHEALAFPCLERIYVHGCPSLRKLPFSLESGKR--NGVLIG--EEEWWNQLEW 130
             LP LK+I    L F CLE+I +  CP+LRKLP    SGK+  NG +I   +  W   ++W
Sbjct:   808 LPKLKNIYRRPLPFLCLEKITIGECPNLRKLPLDSRSGKQGENGCIIHYKDSRWLKGVKW 867

Query:   131 DDEATKHVF 139
              DEATK  F
Sbjct:   868 ADEATKKRF 876

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2166320 AT5G63020 [Arabidopsis thaliana (taxid:3702)]

 Score = 142 (55.0 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
 Identities = 30/63 (47%), Positives = 39/63 (61%)

Query:    78 LKSICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGVLI-GEEEWWNQLEWDDEATK 136
             LK I    L FPCL++I V+GC  LRKLP +  S  R  ++I   ++W   LEW+DEATK
Sbjct:   806 LKHIHRGPLPFPCLQKILVNGCSELRKLPLNFTSVPRGDLVIEAHKKWIEILEWEDEATK 865

Query:   137 HVF 139
               F
Sbjct:   866 ARF 868

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2008510 AT1G61190 "AT1G61190" [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 3.5e-13, Sum P(2) = 3.5e-13
 Identities = 34/94 (36%), Positives = 50/94 (53%)

Query:    53 VSLQKKISVCSFIL----IRRAYFFKLPNLKSICHEALAFPCLERIYVHGCPSLRKLPFS 108
             ++ +K I++ S I     + R + + LP L+SI    L FP L  I V  CP LRKLP +
Sbjct:   782 INKEKAINLTSIITPFQKLERLFLYGLPKLESIYWSPLPFPLLSNIVVKYCPKLRKLPLN 841

Query:   109 LESG---KRNGVLIGEEEWWNQLEWDDEATKHVF 139
               S    +   + +   E  N+LEW+DE TK+ F
Sbjct:   842 ATSVPLVEEFEIRMDPPEQENELEWEDEDTKNRF 875

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_XIII000034 cc-nbs-lrr resistance protein (820 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	183
COG1703	323	COG1703, ArgK, Putative periplasmic protein kinase	5e-05
cd03114	148	cd03114, ArgK-like, The function of this protein f	6e-05
COG1373	398	COG1373, COG1373, Predicted ATPase (AAA+ superfami	8e-04
PRK09435	332	PRK09435, PRK09435, membrane ATPase/protein kinase	0.001
pfam13173	127	pfam13173, AAA_14, AAA domain	0.002
pfam03308	267	pfam03308, ArgK, ArgK protein	0.004
pfam00931	285	pfam00931, NB-ARC, NB-ARC domain	0.004

>gnl|CDD|224617 COG1703, ArgK, Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

 Score = 42.3 bits (100), Expect = 5e-05
 Identities = 16/35 (45%), Positives = 22/35 (62%)

Query: 19 IIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAV 53
          +IG+ GV G GKSTLI+ L     +  H+ A+ AV
Sbjct: 53 VIGITGVPGAGKSTLIEALGRELRERGHRVAVLAV 87

Length = 323

>gnl|CDD|239388 cd03114, ArgK-like, The function of this protein family is unkown

 Score = 41.1 bits (97), Expect = 6e-05
 Identities = 14/35 (40%), Positives = 19/35 (54%)

Query: 19 IIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAV 53
          +IG+ GV G GKSTLI  L         + A+ A+
Sbjct: 1  VIGITGVPGAGKSTLIDALITALRARGKRVAVLAI 35

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems. Length = 148

>gnl|CDD|224292 COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]

 Score = 38.5 bits (90), Expect = 8e-04
 Identities = 14/34 (41%), Positives = 17/34 (50%)

Query: 5  YRPHLRYIEDDGVKIIGLYGVRGVGKSTLIKQLN 38
            P L    D    II + G R VGK+TL+K L 
Sbjct: 25 LLPRLIKKLDLRPFIILILGPRQVGKTTLLKLLI 58

Length = 398

>gnl|CDD|236515 PRK09435, PRK09435, membrane ATPase/protein kinase; Provisional

 Score = 37.9 bits (89), Expect = 0.001
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 20 IGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAV 53
          IG+ GV GVGKST I+ L     +  HK A+ AV
Sbjct: 59 IGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAV 92

Length = 332

>gnl|CDD|221955 pfam13173, AAA_14, AAA domain

 Score = 36.4 bits (85), Expect = 0.002
 Identities = 11/20 (55%), Positives = 14/20 (70%)

Query: 18 KIIGLYGVRGVGKSTLIKQL 37
          KII + G R VGK+TL+ Q 
Sbjct: 3  KIIVITGPRQVGKTTLLLQF 22

This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Length = 127

>gnl|CDD|112137 pfam03308, ArgK, ArgK protein

 Score = 36.6 bits (85), Expect = 0.004
 Identities = 15/35 (42%), Positives = 20/35 (57%)

Query: 19 IIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAV 53
           +G+ GV G GKSTLI+ L        H+ A+ AV
Sbjct: 31 RVGITGVPGAGKSTLIEALGMELRRRGHRVAVLAV 65

The ArgK protein acts as an ATPase enzyme and as a kinase, and phosphorylates periplasmic binding proteins involved in the LAO (lysine, arginine, ornithine)/AO transport systems. Length = 267

>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain

 Score = 36.5 bits (85), Expect = 0.004
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 13 EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYA 52
            D + ++G+ G+ GVGK+TL KQ+ +  S +   F   A
Sbjct: 15 MSDNLGVVGIVGMGGVGKTTLAKQIYNDDS-VGGHFDSVA 53

Length = 285

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	183
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	100.0
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	100.0
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	100.0
COG0411	250	LivG ABC-type branched-chain amino acid transport	99.98
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.97
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	99.97
COG1127	263	Ttg2A ABC-type transport system involved in resist	99.97
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.97
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.96
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	99.96
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	99.96
PRK13537	306	nodulation ABC transporter NodI; Provisional	99.96
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	99.96
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	99.96
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	99.96
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	99.96
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	99.96
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	99.96
PRK13536	340	nodulation factor exporter subunit NodI; Provision	99.96
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	99.96
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	99.96
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	99.96
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.96
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	99.96
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.96
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	99.96
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	99.96
COG4559	259	ABC-type hemin transport system, ATPase component	99.96
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.96
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.95
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.95
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.95
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	99.95
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	99.95
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.95
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	99.95
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	99.95
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.95
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	99.95
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	99.95
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	99.95
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	99.95
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	99.95
COG3638	258	ABC-type phosphate/phosphonate transport system, A	99.95
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	99.95
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.95
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	99.95
COG0410	237	LivF ABC-type branched-chain amino acid transport	99.95
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	99.95
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	99.95
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	99.95
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.95
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	99.95
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	99.95
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.95
cd03269	210	ABC_putative_ATPase This subfamily is involved in	99.95
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	99.95
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	99.95
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.95
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	99.95
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	99.95
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.95
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	99.95
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	99.95
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	99.95
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.95
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	99.95
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	99.95
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.95
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	99.95
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	99.95
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	99.95
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	99.95
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	99.95
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	99.95
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.95
PRK10908	222	cell division protein FtsE; Provisional	99.95
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.95
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	99.94
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.94
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.94
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	99.94
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	99.94
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	99.94
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	99.94
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	99.94
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	99.94
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.94
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	99.94
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	99.94
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	99.94
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	99.94
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	99.94
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.94
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	99.94
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.94
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.94
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	99.94
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.94
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.94
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	99.94
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	99.94
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	99.94
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	99.94
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.94
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	99.94
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	99.94
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	99.94
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	99.94
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	99.94
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	99.94
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.94
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	99.94
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.94
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	99.94
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	99.94
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	99.94
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	99.94
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	99.94
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.94
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	99.94
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	99.94
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	99.94
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	99.94
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	99.94
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.94
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	99.94
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	99.94
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	99.94
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	99.94
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	99.94
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	99.94
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	99.94
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.94
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.94
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	99.93
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	99.93
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
PRK09984	262	phosphonate/organophosphate ester transporter subu	99.93
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.93
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	99.93
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	99.93
cd03299	235	ABC_ModC_like Archeal protein closely related to M	99.93
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	99.93
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	99.93
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	99.93
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	99.93
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	99.93
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.93
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	99.93
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	99.93
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.93
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.93
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
COG1123	539	ATPase components of various ABC-type transport sy	99.93
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.93
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.93
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	99.93
PRK10938	490	putative molybdenum transport ATP-binding protein	99.93
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.93
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	99.93
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	99.93
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	99.93
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	99.93
COG2884	223	FtsE Predicted ATPase involved in cell division [C	99.93
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	99.93
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	99.93
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.93
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	99.93
cd03234	226	ABCG_White The White subfamily represents ABC tran	99.93
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	99.93
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.93
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.93
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	99.93
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	99.93
PRK03695	248	vitamin B12-transporter ATPase; Provisional	99.93
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	99.93
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.92
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	99.92
COG4152	300	ABC-type uncharacterized transport system, ATPase	99.92
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.92
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	99.92
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	99.92
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	99.92
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.92
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	99.92
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	99.92
cd03215	182	ABC_Carb_Monos_II This family represents domain II	99.92
cd03246	173	ABCC_Protease_Secretion This family represents the	99.92
PRK13546	264	teichoic acids export protein ATP-binding subunit;	99.92
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.92
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	99.92
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.92
COG4525	259	TauB ABC-type taurine transport system, ATPase com	99.92
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.92
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.92
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	99.92
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	99.92
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	99.92
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.92
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	99.92
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	99.92
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	99.92
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	99.92
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.92
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	99.92
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	99.92
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	99.92
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.92
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	99.92
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	99.92
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	99.92
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.92
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	99.92
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	99.92
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.92
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.92
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.92
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.92
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	99.92
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.92
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	99.92
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	99.91
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	99.91
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	99.91
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	99.91
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	99.91
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	99.91
COG1123	539	ATPase components of various ABC-type transport sy	99.91
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	99.91
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	99.91
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	99.91
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	99.91
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	99.91
PRK13409	590	putative ATPase RIL; Provisional	99.91
COG4586	325	ABC-type uncharacterized transport system, ATPase	99.91
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.91
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.91
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	99.91
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	99.91
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	99.91
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.91
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	99.91
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	99.91
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.91
PRK10938	490	putative molybdenum transport ATP-binding protein	99.91
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	99.91
COG4674	249	Uncharacterized ABC-type transport system, ATPase	99.91
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	99.91
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	99.91
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.91
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	99.91
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	99.91
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	99.91
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	99.91
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	99.91
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	99.91
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	99.91
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.91
PRK13409	590	putative ATPase RIL; Provisional	99.91
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	99.9
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	99.9
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.9
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.9
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	99.9
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	99.9
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	99.9
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.9
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	99.9
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	99.9
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	99.9
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	99.9
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.9
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	99.9
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.9
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.9
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.9
COG4133	209	CcmA ABC-type transport system involved in cytochr	99.9
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.9
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	99.9
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	99.9
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	99.9
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	99.89
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	99.89
COG4619	223	ABC-type uncharacterized transport system, ATPase	99.89
PRK11147	635	ABC transporter ATPase component; Reviewed	99.89
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	99.89
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	99.89
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	99.89
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	99.89
PLN03073	718	ABC transporter F family; Provisional	99.89
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	99.89
PRK11147	635	ABC transporter ATPase component; Reviewed	99.89
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.88
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	99.88
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	99.88
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	99.88
PRK10522	547	multidrug transporter membrane component/ATP-bindi	99.88
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.88
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	99.88
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	99.88
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	99.88
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	99.88
PLN03211	659	ABC transporter G-25; Provisional	99.88
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	99.88
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.88
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	99.87
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	99.87
COG4181	228	Predicted ABC-type transport system involved in ly	99.87
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	99.87
PRK10535	648	macrolide transporter ATP-binding /permease protei	99.87
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	99.87
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	99.87
COG4598	256	HisP ABC-type histidine transport system, ATPase c	99.87
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	99.87
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	99.87
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.86
COG4172	534	ABC-type uncharacterized transport system, duplica	99.86
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	99.86
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	99.86
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.86
COG4988	559	CydD ABC-type transport system involved in cytochr	99.86
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	99.86
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.86
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	99.85
COG4987	573	CydC ABC-type transport system involved in cytochr	99.85
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	99.85
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	99.84
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.83
PLN03232	1495	ABC transporter C family member; Provisional	99.83
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.83
PLN03130	1622	ABC transporter C family member; Provisional	99.83
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.83
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	99.83
KOG0059	885	consensus Lipid exporter ABCA1 and related protein	99.83
COG0488	530	Uup ATPase components of ABC transporters with dup	99.83
COG4172	534	ABC-type uncharacterized transport system, duplica	99.83
PLN03140	1470	ABC transporter G family member; Provisional	99.82
PLN03073	718	ABC transporter F family; Provisional	99.82
COG4136	213	ABC-type uncharacterized transport system, ATPase	99.82
PTZ00243	1560	ABC transporter; Provisional	99.81
PF00005	137	ABC_tran: ABC transporter This structure is on hol	99.81
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	99.81
PLN03140	1470	ABC transporter G family member; Provisional	99.81
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.8
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	99.8
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	99.8
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	99.79
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.79
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	99.79
COG0488	530	Uup ATPase components of ABC transporters with dup	99.78
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.78
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.78
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	99.77
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	99.76
PTZ00243	1560	ABC transporter; Provisional	99.75
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	99.73
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	99.73
PLN03130	1622	ABC transporter C family member; Provisional	99.72
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	99.72
PLN03232	1495	ABC transporter C family member; Provisional	99.71
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	99.7
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	99.68
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	99.67
KOG0056	790	consensus Heavy metal exporter HMT1, ABC superfami	99.66
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	99.66
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	99.64
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	99.63
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.63
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	99.63
KOG0061	613	consensus Transporter, ABC superfamily (Breast can	99.62
KOG0054	1381	consensus Multidrug resistance-associated protein/	99.62
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.6
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	99.6
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.59
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	99.58
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	99.53
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	99.51
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.49
COG4178	604	ABC-type uncharacterized transport system, permeas	99.46
KOG0054	1381	consensus Multidrug resistance-associated protein/	99.44
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.44
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.38
cd03277	213	ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein	99.36
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.33
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	99.32
KOG0062	582	consensus ATPase component of ABC transporters wit	99.31
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.3
KOG0062	582	consensus ATPase component of ABC transporters wit	99.3
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	99.29
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	99.29
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	99.29
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	99.28
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	99.26
cd03239	178	ABC_SMC_head The structural maintenance of chromos	99.24
KOG0064	728	consensus Peroxisomal long-chain acyl-CoA transpor	99.19
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	99.19
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	99.17
cd03241	276	ABC_RecN RecN ATPase involved in DNA repair; ABC (	99.16
KOG0060	659	consensus Long-chain acyl-CoA transporter, ABC sup	99.15
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	99.14
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.13
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	99.06
KOG2355	291	consensus Predicted ABC-type transport, ATPase com	99.01
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	99.01
KOG0063	592	consensus RNAse L inhibitor, ABC superfamily [RNA	99.0
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	98.99
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	98.91
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	98.84
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	98.83
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	98.78
PF13555	62	AAA_29: P-loop containing region of AAA domain	98.75
PRK09825	176	idnK D-gluconate kinase; Provisional	98.71
PRK06002	450	fliI flagellum-specific ATP synthase; Validated	98.71
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	98.67
TIGR00235	207	udk uridine kinase. Model contains a number of lon	98.67
PRK00635	1809	excinuclease ABC subunit A; Provisional	98.65
PRK00300	205	gmk guanylate kinase; Provisional	98.64
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	98.64
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	98.61
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	98.6
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	98.58
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	98.57
cd01136	326	ATPase_flagellum-secretory_path_III Flagellum-spec	98.56
PRK10416	318	signal recognition particle-docking protein FtsY;	98.54
TIGR03498	418	FliI_clade3 flagellar protein export ATPase FliI.	98.53
PRK07196	434	fliI flagellum-specific ATP synthase; Validated	98.51
PRK08149	428	ATP synthase SpaL; Validated	98.48
PRK07594	433	type III secretion system ATPase SsaN; Validated	98.47
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	98.46
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	98.46
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	98.45
PRK07960	455	fliI flagellum-specific ATP synthase; Validated	98.45
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	98.45
PRK09099	441	type III secretion system ATPase; Provisional	98.44
PRK01889	356	GTPase RsgA; Reviewed	98.43
PRK05922	434	type III secretion system ATPase; Validated	98.43
TIGR01026	440	fliI_yscN ATPase FliI/YscN family. This family of	98.42
TIGR02546	422	III_secr_ATP type III secretion apparatus H+-trans	98.41
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	98.41
PLN02796	347	D-glycerate 3-kinase	98.41
PRK04863	1486	mukB cell division protein MukB; Provisional	98.4
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	98.38
PRK09862	506	putative ATP-dependent protease; Provisional	98.38
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	98.38
TIGR03497	413	FliI_clade2 flagellar protein export ATPase FliI.	98.36
TIGR03496	411	FliI_clade1 flagellar protein export ATPase FliI.	98.35
PRK06793	432	fliI flagellum-specific ATP synthase; Validated	98.33
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	98.32
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	98.31
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.3
PRK03846	198	adenylylsulfate kinase; Provisional	98.3
PRK00098	298	GTPase RsgA; Reviewed	98.3
PRK05480	209	uridine/cytidine kinase; Provisional	98.29
PRK05688	451	fliI flagellum-specific ATP synthase; Validated	98.29
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	98.29
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	98.28
cd01128	249	rho_factor Transcription termination factor rho is	98.28
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.28
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	98.25
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	98.25
PRK08472	434	fliI flagellum-specific ATP synthase; Validated	98.24
PLN03046	460	D-glycerate 3-kinase; Provisional	98.24
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	98.23
PRK08972	444	fliI flagellum-specific ATP synthase; Validated	98.23
PLN02318	656	phosphoribulokinase/uridine kinase	98.23
KOG0063	592	consensus RNAse L inhibitor, ABC superfamily [RNA	98.21
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	98.2
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	98.19
PRK06315	442	type III secretion system ATPase; Provisional	98.19
PRK00889	175	adenylylsulfate kinase; Provisional	98.18
TIGR00368	499	Mg chelatase-related protein. The N-terminal end m	98.18
PRK06820	440	type III secretion system ATPase; Validated	98.17
TIGR02524	358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	98.16
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	98.15
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.15
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	98.14
smart00382	148	AAA ATPases associated with a variety of cellular	98.13
TIGR00101	199	ureG urease accessory protein UreG. This model rep	98.13
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	98.11
PF13476	202	AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V	98.11
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	98.11
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	98.1
PRK08533	230	flagellar accessory protein FlaH; Reviewed	98.1
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	98.09
PLN02165	334	adenylate isopentenyltransferase	98.09
PRK13851	344	type IV secretion system protein VirB11; Provision	98.07
PRK07429	327	phosphoribulokinase; Provisional	98.05
PRK06936	439	type III secretion system ATPase; Provisional	98.02
PRK05541	176	adenylylsulfate kinase; Provisional	98.02
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	98.02
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	98.0
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	98.0
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	98.0
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	97.99
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	97.99

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3.2e-38  Score=246.79  Aligned_cols=168  Identities=17%  Similarity=0.132  Sum_probs=136.9

Q ss_pred             cccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccc---------------cccchheeeh
Q 036195            7 PHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKI---------------SVCSFILIRR   69 (183)
Q Consensus         7 ~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~---------------~~~~~~~l~~   69 (183)
                      ++|+++  ++++|++++|+||||||||||+|+|+|+++|++|+|.+.|.+..+..               ..++.++.+.
T Consensus        18 ~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~   97 (254)
T COG1121          18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDV   97 (254)
T ss_pred             eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHH
Confidence            689865  58999999999999999999999999999999999999998654310               0122333444


Q ss_pred             hhhccCCCCcccccc--ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccc
Q 036195           70 AYFFKLPNLKSICHE--ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHV  138 (183)
Q Consensus        70 ~~lg~lp~l~~l~~~--~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~  138 (183)
                      +.++..+..+.+...  .....+.++|+.+++.+++++++.+|||||+|+      ++.+|+.+   ||++..|+..+..
T Consensus        98 V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~  177 (254)
T COG1121          98 VLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKE  177 (254)
T ss_pred             HHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHH
Confidence            444443333222111  112457899999999999999999999999983      58899997   9999999999999


Q ss_pred             cccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          139 FSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      |+.++..++.+ .++|+|+|||++.|++.+|+|+||.
T Consensus       178 i~~lL~~l~~e-g~tIl~vtHDL~~v~~~~D~vi~Ln  213 (254)
T COG1121         178 IYDLLKELRQE-GKTVLMVTHDLGLVMAYFDRVICLN  213 (254)
T ss_pred             HHHHHHHHHHC-CCEEEEEeCCcHHhHhhCCEEEEEc
Confidence            99999999999 9999999999999999999999996

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=1.9e-38  Score=237.64  Aligned_cols=166  Identities=16%  Similarity=0.067  Sum_probs=147.1

Q ss_pred             cccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccc
Q 036195            5 YRPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSIC   82 (183)
Q Consensus         5 ~~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~   82 (183)
                      +++|++  ||+|++||++||+|||||||||.+.++.|+.+|++|+|.+++.+++..    +.....++.++|+||-.++|
T Consensus        16 kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~l----Pm~~RArlGigYLpQE~SIF   91 (243)
T COG1137          16 KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKL----PMHKRARLGIGYLPQEASIF   91 (243)
T ss_pred             CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccC----ChHHHhhcCcccccccchHh
Confidence            677777  567999999999999999999999999999999999999999999875    45566678899999999988


Q ss_pred             ccccch---------------------HHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccC
Q 036195           83 HEALAF---------------------PCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDD  132 (183)
Q Consensus        83 ~~~~~~---------------------~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d  132 (183)
                      ......                     +..++++.+.+.++++.+..+|||||+|+      ++.+|.++   ||+.+.|
T Consensus        92 r~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVD  171 (243)
T COG1137          92 RKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVD  171 (243)
T ss_pred             hcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCC
Confidence            753311                     13467899999999999999999999982      47899996   9999999


Q ss_pred             cccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          133 EATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      |.+...++.++..++.. .+.|+||+||+++|++.|||+|+|-
T Consensus       172 PiaV~dIq~iI~~L~~r-giGvLITDHNVREtL~i~dRaYIi~  213 (243)
T COG1137         172 PIAVIDIQRIIKHLKDR-GIGVLITDHNVRETLDICDRAYIIS  213 (243)
T ss_pred             chhHHHHHHHHHHHHhC-CceEEEccccHHHHHhhhheEEEEe
Confidence            99999999999999988 9999999999999999999999984

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=100.00  E-value=2.9e-35  Score=231.12  Aligned_cols=171  Identities=18%  Similarity=0.122  Sum_probs=146.4

Q ss_pred             cccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcccc----------------ccccchhe
Q 036195            5 YRPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKK----------------ISVCSFIL   66 (183)
Q Consensus         5 ~~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~----------------~~~~~~~~   66 (183)
                      .+++++++  ++++||+++|+||||||||||||+|+|+++|.+|+|.++|+++.+.                .....+++
T Consensus        14 ~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV   93 (258)
T COG1120          14 GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTV   93 (258)
T ss_pred             CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEE
Confidence            46788855  5899999999999999999999999999999999999999876542                12345667


Q ss_pred             eehhhhccCCCCccccccc-c-chHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195           67 IRRAYFFKLPNLKSICHEA-L-AFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT  135 (183)
Q Consensus        67 l~~~~lg~lp~l~~l~~~~-~-~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~  135 (183)
                      .+.+.+|+.|....+.... . ...+.++++.+++.+++++++++|||||+|+      ++.+++.+   ||..+-|...
T Consensus        94 ~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~  173 (258)
T COG1120          94 YELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAH  173 (258)
T ss_pred             eehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHH
Confidence            8888888888766554221 1 2247788999999999999999999999983      47788876   8999999999


Q ss_pred             ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+..++..+..+..+++.|+.||++.+.+.||++|.+.
T Consensus       174 Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk  213 (258)
T COG1120         174 QIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLK  213 (258)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEE
Confidence            9999999999998889999999999999999999999986

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.98  E-value=4.3e-34  Score=220.15  Aligned_cols=166  Identities=11%  Similarity=0.067  Sum_probs=134.9

Q ss_pred             cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccc-----------------cccchheeehhhhc
Q 036195           11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKI-----------------SVCSFILIRRAYFF   73 (183)
Q Consensus        11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~-----------------~~~~~~~l~~~~lg   73 (183)
                      ||++++||++||||||||||||++++|+|+++|++|+|.++|++++...                 .+...++++++.++
T Consensus        24 sl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va  103 (250)
T COG0411          24 SLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVG  103 (250)
T ss_pred             eEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccccccCCCcHHHHHHHH
Confidence            5679999999999999999999999999999999999999999877531                 11223344444444


Q ss_pred             cCCCCc--cccc--------cccchHHHHHHHHcCCCCccCCCCCCCChhhhh--e----ecCchhhc---ccccccCcc
Q 036195           74 KLPNLK--SICH--------EALAFPCLERIYVHGCPSLRKLPFSLESGKRNG--V----LIGEEEWW---NQLEWDDEA  134 (183)
Q Consensus        74 ~lp~l~--~l~~--------~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~--~----i~~~~~w~---~~l~~~d~~  134 (183)
                      ...+..  ..+.        .....+..++++.++|.+.++.+..+||+||+|  +    ++.+|+.+   ||..+..+.
T Consensus       104 ~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~  183 (250)
T COG0411         104 AHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPE  183 (250)
T ss_pred             hhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHH
Confidence            322211  1111        111235678899999999999999999999887  3    48899997   899999999


Q ss_pred             cccccccceeecCcccccCCCCCCceeeeeecccceEEEEee
Q 036195          135 TKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICIDV  176 (183)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (183)
                      ..+.+..++..++.+...+|+++.||+..||..||||+++|-
T Consensus       184 e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~  225 (250)
T COG0411         184 ETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNY  225 (250)
T ss_pred             HHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccC
Confidence            999999999999998899999999999999999999999984

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.97  E-value=2.2e-33  Score=217.40  Aligned_cols=162  Identities=12%  Similarity=0.054  Sum_probs=132.8

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccc-
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSIC-   82 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~-   82 (183)
                      .++|+++  +|.+||+++|+||||||||||||+|+|+.+|++|+|.++|+++....          ..++++.|...++ 
T Consensus        16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~----------~~~~~vFQ~~~LlP   85 (248)
T COG1116          16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPG----------PDIGYVFQEDALLP   85 (248)
T ss_pred             eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCC----------CCEEEEeccCcccc
Confidence            5788754  69999999999999999999999999999999999999998764321          0111222211111 


Q ss_pred             ------------------ccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195           83 ------------------HEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT  135 (183)
Q Consensus        83 ------------------~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~  135 (183)
                                        .......+.++++.+|+....+.++++|||||||+      ++.+|+.+   ||+.=-|.-+
T Consensus        86 W~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalT  165 (248)
T COG1116          86 WLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALT  165 (248)
T ss_pred             hhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHH
Confidence                              11122357888999999999999999999999983      47788886   8999999999


Q ss_pred             ccccccceeecCcccccCCCCCCceeeeeecccceEEEEeeC
Q 036195          136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICIDVD  177 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (183)
                      +..++..+..+-.++..++++++||++++...+|||+.+.-.
T Consensus       166 R~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~  207 (248)
T COG1116         166 REELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR  207 (248)
T ss_pred             HHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence            999999999999999999999999999999999999998643

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.97  E-value=8.9e-33  Score=213.89  Aligned_cols=170  Identities=14%  Similarity=0.108  Sum_probs=138.3

Q ss_pred             ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcccccc-------------ccchheeeh-
Q 036195            6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKIS-------------VCSFILIRR-   69 (183)
Q Consensus         6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~-------------~~~~~~l~~-   69 (183)
                      +++++  ||+|++||+++++|||||||||+||||++|+.|++|+|.++|+++.+...             ...||.+.. 
T Consensus        14 ~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~   93 (309)
T COG1125          14 KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVA   93 (309)
T ss_pred             ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHH
Confidence            56676  45699999999999999999999999999999999999999998775310             111222221 


Q ss_pred             hhhccCCCCccccccccchHHHHHHHHcCCC--CccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccc
Q 036195           70 AYFFKLPNLKSICHEALAFPCLERIYVHGCP--SLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHV  138 (183)
Q Consensus        70 ~~lg~lp~l~~l~~~~~~~~~l~vLe~l~L~--~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~  138 (183)
                      ..+..+|++..|.+.....++.++++.++++  .++++++++|||||+|+      ++.+|..+   ||+.-.||.++..
T Consensus        94 eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~  173 (309)
T COG1125          94 ENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQ  173 (309)
T ss_pred             HHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHH
Confidence            1233444444444433344678899999996  48999999999999883      58888886   8999999999999


Q ss_pred             cccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          139 FSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ++..|..+......+|.+++||+++.++..||+.++|
T Consensus       174 lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~  210 (309)
T COG1125         174 LQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMD  210 (309)
T ss_pred             HHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEec
Confidence            9999999999999999999999999999999999887

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.97  E-value=8.1e-32  Score=207.03  Aligned_cols=168  Identities=14%  Similarity=0.073  Sum_probs=135.0

Q ss_pred             cccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccc
Q 036195            5 YRPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSIC   82 (183)
Q Consensus         5 ~~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~   82 (183)
                      .+.|++++  +|.+||+++|+||||+|||||||+|.|+++|++|+|.++|.++.+........  -...+|.+.|.+.+|
T Consensus        20 ~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~--ir~r~GvlFQ~gALF   97 (263)
T COG1127          20 DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYE--IRKRMGVLFQQGALF   97 (263)
T ss_pred             CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHH--HHhheeEEeeccccc
Confidence            46788855  59999999999999999999999999999999999999999876531110000  011244445554444


Q ss_pred             ccccch--------------------HHHHHHHHcCCCCc-cCCCCCCCChhhhh------eecCchhhc---ccccccC
Q 036195           83 HEALAF--------------------PCLERIYVHGCPSL-RKLPFSLESGKRNG------VLIGEEEWW---NQLEWDD  132 (183)
Q Consensus        83 ~~~~~~--------------------~~l~vLe~l~L~~L-~~~~~~~LSgGqk~------~i~~~~~w~---~~l~~~d  132 (183)
                      .....+                    -++.-++.+|+..- .++.+++|||||++      .|+-+|+.+   ||..+-|
T Consensus        98 ssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLD  177 (263)
T COG1127          98 SSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLD  177 (263)
T ss_pred             cccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCC
Confidence            432211                    13455788899877 89999999999987      368899986   8999999


Q ss_pred             cccccccccceeecCcccccCCCCCCceeeeeecccceEEEE
Q 036195          133 EATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICI  174 (183)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (183)
                      |.+-..|..+|..++.+...++.|+|||++.+..+||||+.|
T Consensus       178 PI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L  219 (263)
T COG1127         178 PISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVL  219 (263)
T ss_pred             cchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEE
Confidence            999999999999999999999999999999999999999987

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.97  E-value=1.1e-31  Score=203.41  Aligned_cols=166  Identities=14%  Similarity=0.035  Sum_probs=131.0

Q ss_pred             ccccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccc
Q 036195            5 YRPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSIC   82 (183)
Q Consensus         5 ~~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~   82 (183)
                      ...||++  ++|++||+++|+||||||||||||+|++|..|++|+|.++|.++....   . ....+..+|.+.|...+|
T Consensus        14 ~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~---~-~~~~R~~vGmVFQ~fnLF   89 (240)
T COG1126          14 DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKK---D-ILKLRRKVGMVFQQFNLF   89 (240)
T ss_pred             CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchh---h-HHHHHHhcCeeccccccc
Confidence            3567885  469999999999999999999999999999999999999997664321   0 000112233333333333


Q ss_pred             ccc--------------------cchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCc
Q 036195           83 HEA--------------------LAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDE  133 (183)
Q Consensus        83 ~~~--------------------~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~  133 (183)
                      ++.                    .....++.|+.+|+.+.++.++.+|||||+|+      ++++|+..   ||.+--||
T Consensus        90 PHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDP  169 (240)
T COG1126          90 PHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDP  169 (240)
T ss_pred             ccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCH
Confidence            221                    11234667888999999999999999999983      48899886   88999999


Q ss_pred             ccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          134 ATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +....+...+..+..+ ..+.++++|++.++...+||||-+|
T Consensus       170 Elv~EVL~vm~~LA~e-GmTMivVTHEM~FAr~VadrviFmd  210 (240)
T COG1126         170 ELVGEVLDVMKDLAEE-GMTMIIVTHEMGFAREVADRVIFMD  210 (240)
T ss_pred             HHHHHHHHHHHHHHHc-CCeEEEEechhHHHHHhhheEEEee
Confidence            9999999999999888 8999999999999999999999887

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.96  E-value=3.8e-31  Score=213.80  Aligned_cols=164  Identities=18%  Similarity=0.149  Sum_probs=135.9

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|+++  ++++||++||+||||||||||+|+|+|+++|++|+|.++|.++...      +......++++|+...++.
T Consensus        18 ~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~------~~~~~~~igy~~~~~~~~~   91 (293)
T COG1131          18 KTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE------PAKVRRRIGYVPQEPSLYP   91 (293)
T ss_pred             CEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC------HHHHHhheEEEccCCCCCc
Confidence            4688854  5999999999999999999999999999999999999999876542      0111134666666554443


Q ss_pred             ccc-------------------chHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195           84 EAL-------------------AFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT  135 (183)
Q Consensus        84 ~~~-------------------~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~  135 (183)
                      ...                   ...+.++++.+++...+++++.+||+||||+      +..+|+.+   ||....|+..
T Consensus        92 ~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~  171 (293)
T COG1131          92 ELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPES  171 (293)
T ss_pred             cccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHH
Confidence            211                   1245678999999987789999999999983      48889886   8999999999


Q ss_pred             ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+..++..+..+...+|+++||.++++...||+|+.|.
T Consensus       172 ~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~  211 (293)
T COG1131         172 RREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILN  211 (293)
T ss_pred             HHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEe
Confidence            9999999999999866999999999999999999999885

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.96  E-value=3.5e-31  Score=209.95  Aligned_cols=169  Identities=16%  Similarity=0.049  Sum_probs=134.3

Q ss_pred             cccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccc
Q 036195            5 YRPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSIC   82 (183)
Q Consensus         5 ~~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~   82 (183)
                      +.++++  ||+|++||++||||.||||||||+|+|++|.+|++|+|.++|.++........  ...+..++...|...+.
T Consensus        18 ~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~L--r~~R~~IGMIFQhFnLL   95 (339)
T COG1135          18 TVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAEL--RQLRQKIGMIFQHFNLL   95 (339)
T ss_pred             ceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHH--HHHHhhccEEecccccc
Confidence            345777  56799999999999999999999999999999999999999988764211100  00011222222221111


Q ss_pred             c-------------------cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcc
Q 036195           83 H-------------------EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEA  134 (183)
Q Consensus        83 ~-------------------~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~  134 (183)
                      .                   .....++.++++.+|+++..+.++.+|||||||+      ++.+|+.+   |+.+=-||+
T Consensus        96 ssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~  175 (339)
T COG1135          96 SSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPE  175 (339)
T ss_pred             ccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChH
Confidence            1                   1112356788999999999999999999999983      48899987   788999999


Q ss_pred             cccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          135 TKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +-.++..++..+..+...+|.|++|.++.|-++||||-++|
T Consensus       176 TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~  216 (339)
T COG1135         176 TTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLD  216 (339)
T ss_pred             HHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEee
Confidence            99999999999999999999999999999999999999987

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=99.96  E-value=8.8e-31  Score=212.70  Aligned_cols=163  Identities=15%  Similarity=0.097  Sum_probs=130.4

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|++  |++++||++||+||||||||||+++|+|+++|++|+|.++|.++...      +......++++++...++.
T Consensus         6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~------~~~~~~~i~~~~q~~~~~~   79 (302)
T TIGR01188         6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVRE------PRKVRRSIGIVPQYASVDE   79 (302)
T ss_pred             eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccC------HHHHHhhcEEecCCCCCCC
Confidence            467875  56999999999999999999999999999999999999999876431      0000123455554433322


Q ss_pred             ccc-------------------chHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195           84 EAL-------------------AFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT  135 (183)
Q Consensus        84 ~~~-------------------~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~  135 (183)
                      ...                   .....++++.+++....++++.+|||||+|+      +..+|+.+   ||....|+.+
T Consensus        80 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~  159 (302)
T TIGR01188        80 DLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRT  159 (302)
T ss_pred             CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHH
Confidence            100                   1135678899999999999999999999983      47888887   9999999999


Q ss_pred             ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+..++..+..+ ..+|+++||+++++.+.||++++|+
T Consensus       160 ~~~l~~~l~~~~~~-g~tvi~~sH~~~~~~~~~d~v~~l~  198 (302)
T TIGR01188       160 RRAIWDYIRALKEE-GVTILLTTHYMEEADKLCDRIAIID  198 (302)
T ss_pred             HHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEEE
Confidence            99999999888655 7899999999999999999999996

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=99.96  E-value=8.9e-31  Score=212.98  Aligned_cols=163  Identities=13%  Similarity=0.079  Sum_probs=130.6

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      ..+|++  |+|++||++||+||||||||||+++|+|+++|++|+|+++|.++....      ......++++|+...++.
T Consensus        20 ~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~------~~~~~~ig~v~q~~~~~~   93 (306)
T PRK13537         20 KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA------RHARQRVGVVPQFDNLDP   93 (306)
T ss_pred             eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch------HHHHhcEEEEeccCcCCC
Confidence            357774  568999999999999999999999999999999999999998765321      001123455554433332


Q ss_pred             ccc-------------------chHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195           84 EAL-------------------AFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT  135 (183)
Q Consensus        84 ~~~-------------------~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~  135 (183)
                      ...                   .....++++.+++....++++.+||+||+|+      +..+|+.+   ||....|+.+
T Consensus        94 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~  173 (306)
T PRK13537         94 DFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQA  173 (306)
T ss_pred             CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHH
Confidence            110                   1123467889999999999999999999983      47889887   8999999999


Q ss_pred             ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+..++..+..+ ..+|+++||+++++.+.||++++|+
T Consensus       174 ~~~l~~~l~~l~~~-g~till~sH~l~e~~~~~d~i~il~  212 (306)
T PRK13537        174 RHLMWERLRSLLAR-GKTILLTTHFMEEAERLCDRLCVIE  212 (306)
T ss_pred             HHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEEE
Confidence            99999999988655 8899999999999999999999997

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.96  E-value=1.1e-30  Score=204.23  Aligned_cols=171  Identities=17%  Similarity=0.077  Sum_probs=134.8

Q ss_pred             ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccc---------cccc-cchhe------e
Q 036195            6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQK---------KISV-CSFIL------I   67 (183)
Q Consensus         6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~---------~~~~-~~~~~------l   67 (183)
                      .++++  |+++++||+++|+||||||||||+++++|+++|++|.|.++|.++..         ..++ ++.|.      -
T Consensus        17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~t   96 (235)
T COG1122          17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPT   96 (235)
T ss_pred             ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCc
Confidence            36776  55699999999999999999999999999999999999999987541         0000 11110      0


Q ss_pred             ehhhhccCCCCccccccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccc
Q 036195           68 RRAYFFKLPNLKSICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHV  138 (183)
Q Consensus        68 ~~~~lg~lp~l~~l~~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~  138 (183)
                      ....+.+-+....+.......++.++++.+++..++++++..|||||||+      ++++|+.|   ||...-|+..+..
T Consensus        97 V~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~  176 (235)
T COG1122          97 VEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRE  176 (235)
T ss_pred             HHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHH
Confidence            00112222222223332233457789999999999999999999999993      48899986   9999999999999


Q ss_pred             cccceeecCcccccCCCCCCceeeeeecccceEEEEee
Q 036195          139 FSSKLIITTPQTVISIPQPSYTYEATIRPRYELICIDV  176 (183)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (183)
                      +..++..+..+...+++++|||++.+...+||+|.++=
T Consensus       177 l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~  214 (235)
T COG1122         177 LLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDD  214 (235)
T ss_pred             HHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEEC
Confidence            99999999999889999999999999999999999873

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=99.96  E-value=1e-30  Score=202.19  Aligned_cols=163  Identities=14%  Similarity=0.054  Sum_probs=127.8

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      ++++++  |++++||+++|+||||||||||+++|+|+++|++|+|.++|+++....      .. ...++++++...++.
T Consensus        13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~------~~-~~~i~~v~q~~~~~~   85 (213)
T cd03259          13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP------PE-RRNIGMVFQDYALFP   85 (213)
T ss_pred             eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc------hh-hccEEEEcCchhhcc
Confidence            467874  568999999999999999999999999999999999999998764310      00 012333333221111


Q ss_pred             c-------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195           84 E-------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT  135 (183)
Q Consensus        84 ~-------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~  135 (183)
                      .                   .......++++.+++....++++.+|||||+|+      +..+|+.+   ||....|+.+
T Consensus        86 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~  165 (213)
T cd03259          86 HLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKL  165 (213)
T ss_pred             CCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence            0                   001134567888999988899999999999983      47788887   9999999999


Q ss_pred             ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+..++..+..+...+|+++|||++.+.+.||++++++
T Consensus       166 ~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~  205 (213)
T cd03259         166 REELREELKELQRELGITTIYVTHDQEEALALADRIAVMN  205 (213)
T ss_pred             HHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEE
Confidence            9999999988766557899999999999999999999996

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=99.96  E-value=9e-31  Score=215.48  Aligned_cols=167  Identities=17%  Similarity=0.066  Sum_probs=131.7

Q ss_pred             ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195            7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE   84 (183)
Q Consensus         7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~   84 (183)
                      ++|++  |++++||++||+||||||||||+|+|+|+++|++|+|.++|.++...... ... .....++++++...++..
T Consensus        19 ~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~-~l~-~~r~~Ig~v~Q~~~l~~~   96 (343)
T TIGR02314        19 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNS-ELT-KARRQIGMIFQHFNLLSS   96 (343)
T ss_pred             EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHH-HHH-HHhcCEEEEECCcccccc
Confidence            68885  45899999999999999999999999999999999999999876531000 000 001123444433222211


Q ss_pred             -------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccc
Q 036195           85 -------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATK  136 (183)
Q Consensus        85 -------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~  136 (183)
                                         .....+.++++.+++.++.++++.+|||||+|+      ++.+|+.+   ||....|+.++
T Consensus        97 ~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~  176 (343)
T TIGR02314        97 RTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATT  176 (343)
T ss_pred             CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHH
Confidence                               011235678999999999999999999999983      47888887   89999999999


Q ss_pred             cccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          137 HVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ..+..++..+..+..++|+++||+++.+.+.||+++++|
T Consensus       177 ~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~  215 (343)
T TIGR02314       177 QSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVIS  215 (343)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence            999999998887778999999999999999999999997

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=99.96  E-value=1.7e-30  Score=202.05  Aligned_cols=164  Identities=17%  Similarity=0.045  Sum_probs=127.8

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|++  |++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++....     ... ...++++++...++.
T Consensus        13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~-----~~~-~~~i~~~~q~~~~~~   86 (220)
T cd03265          13 FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREP-----REV-RRRIGIVFQDLSVDD   86 (220)
T ss_pred             EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcCh-----HHH-hhcEEEecCCccccc
Confidence            357774  568999999999999999999999999999999999999997654210     000 012233333221111


Q ss_pred             c-------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195           84 E-------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT  135 (183)
Q Consensus        84 ~-------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~  135 (183)
                      .                   .......++++.+++....+.++.+|||||+|+      +..+|+.+   ||+...|+..
T Consensus        87 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~  166 (220)
T cd03265          87 ELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQT  166 (220)
T ss_pred             cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHH
Confidence            0                   011235677899999988899999999999983      47788887   9999999999


Q ss_pred             ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+..++..+..+...+++++|||++++...||+++.++
T Consensus       167 ~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~  206 (220)
T cd03265         167 RAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIID  206 (220)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence            9999999998877667899999999999999999999986

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=99.96  E-value=1.8e-30  Score=211.14  Aligned_cols=161  Identities=12%  Similarity=0.063  Sum_probs=133.5

Q ss_pred             ccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc-
Q 036195            8 HLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE-   84 (183)
Q Consensus         8 ~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~-   84 (183)
                      +++  ||+|+.||+++|+||||||||||||+|+||.+|++|+|.|+|+++++..     |..  ..++.+.|...+|++ 
T Consensus        18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~-----P~~--R~iamVFQ~yALyPhm   90 (338)
T COG3839          18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLP-----PEK--RGIAMVFQNYALYPHM   90 (338)
T ss_pred             eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCC-----hhH--CCEEEEeCCccccCCC
Confidence            677  4569999999999999999999999999999999999999999887521     111  233444444333332 


Q ss_pred             ------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccccc
Q 036195           85 ------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKH  137 (183)
Q Consensus        85 ------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~  137 (183)
                                        ....++.++.+.+++.++.++.+.+|||||+|+      |..+|+..   ||++-.|...+.
T Consensus        91 tV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~  170 (338)
T COG3839          91 TVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRV  170 (338)
T ss_pred             cHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHH
Confidence                              223356788999999999999999999999983      46777754   889999999999


Q ss_pred             ccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          138 VFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      .....+..+..+...+++.++||..+.|..+||+.+++
T Consensus       171 ~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~  208 (338)
T COG3839         171 LMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMN  208 (338)
T ss_pred             HHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEe
Confidence            99999999999999999999999999999999999988

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=99.96  E-value=1.3e-30  Score=192.95  Aligned_cols=163  Identities=14%  Similarity=0.061  Sum_probs=133.0

Q ss_pred             cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcccc--------------ccccchheeehhhhccCC
Q 036195           11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKK--------------ISVCSFILIRRAYFFKLP   76 (183)
Q Consensus        11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~--------------~~~~~~~~l~~~~lg~lp   76 (183)
                      +++|..||+++|+||||||||||+++|+|+..|.+|+|+++|++....              +.+.-.++.+++.+|.-|
T Consensus        19 dl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P   98 (231)
T COG3840          19 DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSP   98 (231)
T ss_pred             EEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCc
Confidence            677999999999999999999999999999999999999999986532              111122333344444444


Q ss_pred             CCccccccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe-------ecCchhhc--ccccccCcccccccccceeecC
Q 036195           77 NLKSICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV-------LIGEEEWW--NQLEWDDEATKHVFSSKLIITT  147 (183)
Q Consensus        77 ~l~~l~~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~-------i~~~~~w~--~~l~~~d~~~~~~~~~~~~~~~  147 (183)
                      .++.-  ......+..++..+|+..+.++.+.+|||||||+       +..+|-|+  ||+.--||..+.....++..+-
T Consensus        99 ~LkL~--a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~  176 (231)
T COG3840          99 GLKLN--AEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLC  176 (231)
T ss_pred             ccccC--HHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHH
Confidence            43311  1112346778889999999999999999999983       36778886  8999999999999999999999


Q ss_pred             cccccCCCCCCceeeeeecccceEEEEe
Q 036195          148 PQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      .+...+++|+||+.+.+.++.+|++.+|
T Consensus       177 ~E~~~TllmVTH~~~Da~~ia~~~~fl~  204 (231)
T COG3840         177 DERKMTLLMVTHHPEDAARIADRVVFLD  204 (231)
T ss_pred             HhhCCEEEEEeCCHHHHHHhhhceEEEe
Confidence            9999999999999999999999999998

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=99.96  E-value=2.4e-30  Score=212.94  Aligned_cols=163  Identities=18%  Similarity=0.139  Sum_probs=129.3

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|++  |+|++||++||+||||||||||+++|+|+++|++|+|.++|.++....      ......++++|+...++.
T Consensus        54 ~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~------~~~~~~ig~v~q~~~~~~  127 (340)
T PRK13536         54 KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA------RLARARIGVVPQFDNLDL  127 (340)
T ss_pred             EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch------HHHhccEEEEeCCccCCC
Confidence            357875  569999999999999999999999999999999999999998765310      001122344443322221


Q ss_pred             cc-------------------cchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195           84 EA-------------------LAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT  135 (183)
Q Consensus        84 ~~-------------------~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~  135 (183)
                      ..                   ......++++.+++....+.++.+||+||+|+      +..+|+++   ||....|+.+
T Consensus       128 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~  207 (340)
T PRK13536        128 EFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHA  207 (340)
T ss_pred             CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHH
Confidence            10                   01123467888999999999999999999983      47889987   9999999999


Q ss_pred             ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+..++..+..+ ..+|+++||+++++.+.||+|++|+
T Consensus       208 r~~l~~~l~~l~~~-g~tilisSH~l~e~~~~~d~i~il~  246 (340)
T PRK13536        208 RHLIWERLRSLLAR-GKTILLTTHFMEEAERLCDRLCVLE  246 (340)
T ss_pred             HHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEEE
Confidence            99999999988665 8899999999999999999999996

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.96  E-value=1.8e-30  Score=212.12  Aligned_cols=163  Identities=12%  Similarity=0.067  Sum_probs=133.6

Q ss_pred             ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      .++++  ||+|++||+++|+||||||||||||+|+|+..|++|+|.++|+++....     +.  ...++.+.|...+|+
T Consensus        18 ~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lp-----p~--kR~ig~VFQ~YALFP   90 (352)
T COG3842          18 FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVP-----PE--KRPIGMVFQSYALFP   90 (352)
T ss_pred             eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCC-----hh--hcccceeecCcccCC
Confidence            46677  5569999999999999999999999999999999999999999887521     11  123333333333333


Q ss_pred             cc--------------------cchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcc
Q 036195           84 EA--------------------LAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEA  134 (183)
Q Consensus        84 ~~--------------------~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~  134 (183)
                      +.                    ....+.++++.+++..+.++++++|||||+|+      ++.+|..+   ||++-.|..
T Consensus        91 HltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~k  170 (352)
T COG3842          91 HMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAK  170 (352)
T ss_pred             CCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHH
Confidence            21                    12256788999999999999999999999983      47788775   899999999


Q ss_pred             cccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          135 TKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      .|..++.-+..+..+..++.++++||-++.|..+||+.+..
T Consensus       171 LR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~  211 (352)
T COG3842         171 LREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMN  211 (352)
T ss_pred             HHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEcc
Confidence            99999999999999999999999999999999999998753

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=99.96  E-value=2.7e-30  Score=216.31  Aligned_cols=169  Identities=13%  Similarity=0.074  Sum_probs=129.5

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccc--------cc--------cchhee
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKI--------SV--------CSFILI   67 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~--------~~--------~~~~~l   67 (183)
                      +++|++  |++++||+++|+||||||||||||+|+|+++|++|+|.++|+++....        .+        ..++..
T Consensus        16 ~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~   95 (402)
T PRK09536         16 TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVR   95 (402)
T ss_pred             EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHH
Confidence            467875  458999999999999999999999999999999999999998765310        00        111112


Q ss_pred             ehhhhccCCCCcccc--ccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccc
Q 036195           68 RRAYFFKLPNLKSIC--HEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATK  136 (183)
Q Consensus        68 ~~~~lg~lp~l~~l~--~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~  136 (183)
                      +.+.+++.+....+.  .......+.++++.+++..+.++++.+||+||+|+      ++.+|+.+   ||....|+..+
T Consensus        96 e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~  175 (402)
T PRK09536         96 QVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQ  175 (402)
T ss_pred             HHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHH
Confidence            222222211111111  00112245788999999999999999999999983      47889987   99999999999


Q ss_pred             cccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          137 HVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ..+..++..+..+ ..+|+|+|||++.+.+.|||+++|+
T Consensus       176 ~~l~~lL~~l~~~-g~TIIivsHdl~~~~~~adrii~l~  213 (402)
T PRK09536        176 VRTLELVRRLVDD-GKTAVAAIHDLDLAARYCDELVLLA  213 (402)
T ss_pred             HHHHHHHHHHHhc-CCEEEEEECCHHHHHHhCCEEEEEE
Confidence            9999999988754 7899999999999999999999997

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=3.5e-30  Score=212.76  Aligned_cols=163  Identities=12%  Similarity=0.075  Sum_probs=131.9

Q ss_pred             ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|+  ||++++||+++|+||||||||||||+|+|+.+|++|+|.++|+++....     +  ....+++++|...++.
T Consensus        19 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~-----~--~~r~ig~vfQ~~~lfp   91 (351)
T PRK11432         19 NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRS-----I--QQRDICMVFQSYALFP   91 (351)
T ss_pred             eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCC-----H--HHCCEEEEeCCcccCC
Confidence            35677  5569999999999999999999999999999999999999998765310     0  1123344444333332


Q ss_pred             cc-------------------cchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195           84 EA-------------------LAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT  135 (183)
Q Consensus        84 ~~-------------------~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~  135 (183)
                      ..                   ....+.++++.+++..+.++++.+|||||+|+      ++.+|+.+   ||+...|+..
T Consensus        92 ~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~  171 (351)
T PRK11432         92 HMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANL  171 (351)
T ss_pred             CCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHH
Confidence            10                   11235678889999999999999999999983      47788887   8999999999


Q ss_pred             ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+...+..+..+...+++++|||.+++++.||++++++
T Consensus       172 r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~  211 (351)
T PRK11432        172 RRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMN  211 (351)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEE
Confidence            9999999998877778999999999999999999999997

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=99.96  E-value=4.6e-30  Score=199.54  Aligned_cols=160  Identities=12%  Similarity=0.048  Sum_probs=126.3

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      ++++++  |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++....          ..++++++...++.
T Consensus        17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~----------~~i~~v~q~~~~~~   86 (220)
T cd03293          17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPG----------PDRGYVFQQDALLP   86 (220)
T ss_pred             eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccc----------CcEEEEeccccccc
Confidence            468875  568999999999999999999999999999999999999997654210          01122222111110


Q ss_pred             -------------------cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195           84 -------------------EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT  135 (183)
Q Consensus        84 -------------------~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~  135 (183)
                                         ........++++.+++....++++.+|||||+|+      ++.+|+++   ||....|+.+
T Consensus        87 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~  166 (220)
T cd03293          87 WLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALT  166 (220)
T ss_pred             CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHH
Confidence                               0011235678899999888899999999999983      47788887   9999999999


Q ss_pred             ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+..++..+..+...+|+++||+++++.+.||++++++
T Consensus       167 ~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~  206 (220)
T cd03293         167 REQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLS  206 (220)
T ss_pred             HHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEE
Confidence            9999999987765557899999999999999999999996

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=4.3e-30  Score=212.65  Aligned_cols=163  Identities=11%  Similarity=0.021  Sum_probs=131.9

Q ss_pred             ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|+  ||++++||+++|+||||||||||||+|+|+.+|++|+|.++|+++....     +  ....+++++|...++.
T Consensus        17 ~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~-----~--~~r~ig~v~Q~~~lfp   89 (356)
T PRK11650         17 TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELE-----P--ADRDIAMVFQNYALYP   89 (356)
T ss_pred             CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCC-----H--HHCCEEEEeCCccccC
Confidence            35777  5569999999999999999999999999999999999999998765310     0  0123444444333332


Q ss_pred             cc-------------------cchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195           84 EA-------------------LAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT  135 (183)
Q Consensus        84 ~~-------------------~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~  135 (183)
                      ..                   ....+.++++.+++..+.++++.+|||||+|+      ++.+|+.+   ||+...|+..
T Consensus        90 ~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~  169 (356)
T PRK11650         90 HMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKL  169 (356)
T ss_pred             CCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence            10                   01235678999999999999999999999983      47888887   8999999999


Q ss_pred             ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+...+..+..+...+++++|||++++++.||++++++
T Consensus       170 r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~  209 (356)
T PRK11650        170 RVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMN  209 (356)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence            9999999998877778999999999999999999999986

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.96  E-value=3.6e-30  Score=198.36  Aligned_cols=159  Identities=17%  Similarity=0.090  Sum_probs=128.4

Q ss_pred             ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195            7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE   84 (183)
Q Consensus         7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~   84 (183)
                      +++++  |++.+||++||+|+||||||||.|+|+|+.+|++|+|.++|.+........          .+......+||+
T Consensus        21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~----------~~~~~VQmVFQD   90 (252)
T COG1124          21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAK----------AFYRPVQMVFQD   90 (252)
T ss_pred             hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccch----------hhccceeEEecC
Confidence            57875  568999999999999999999999999999999999999997665421100          001111112221


Q ss_pred             c-------------------------cchHHHHHHHHcCCC-CccCCCCCCCChhhhhe------ecCchhhc---cccc
Q 036195           85 A-------------------------LAFPCLERIYVHGCP-SLRKLPFSLESGKRNGV------LIGEEEWW---NQLE  129 (183)
Q Consensus        85 ~-------------------------~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~  129 (183)
                      +                         ...++.++++.++++ ..+++.+++|||||+|+      +..+|+.+   |+++
T Consensus        91 p~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptS  170 (252)
T COG1124          91 PYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTS  170 (252)
T ss_pred             CccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchh
Confidence            1                         011267889999997 47889999999999984      36788886   8899


Q ss_pred             ccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          130 WDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       130 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      --|..++..+..++..++.++..+.+++|||+.++...|||+++.|
T Consensus       171 aLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~  216 (252)
T COG1124         171 ALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMD  216 (252)
T ss_pred             hhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeee
Confidence            9999999999999999999999999999999999999999999987

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=99.96  E-value=4.9e-30  Score=212.12  Aligned_cols=163  Identities=11%  Similarity=0.081  Sum_probs=133.0

Q ss_pred             ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|+  +|++++||+++|+|||||||||||++|+|+.+|++|+|.++|+++....     +  ....+++++|...+++
T Consensus        17 ~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~-----~--~~r~ig~v~Q~~~lfp   89 (353)
T TIGR03265        17 FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLP-----P--QKRDYGIVFQSYALFP   89 (353)
T ss_pred             eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCC-----H--HHCCEEEEeCCcccCC
Confidence            34677  5668999999999999999999999999999999999999998775310     1  0123444444433332


Q ss_pred             cc-------------------cchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195           84 EA-------------------LAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT  135 (183)
Q Consensus        84 ~~-------------------~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~  135 (183)
                      ..                   ....+.++++.+++..+.++++.+|||||+|+      ++.+|+.+   ||+...|...
T Consensus        90 ~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~  169 (353)
T TIGR03265        90 NLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARV  169 (353)
T ss_pred             CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence            10                   11235678999999999999999999999983      47888887   8999999999


Q ss_pred             ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+...+..+..+..++++++|||.+++++.||++++++
T Consensus       170 r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~  209 (353)
T TIGR03265       170 REHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMN  209 (353)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEE
Confidence            9999999998877778999999999999999999999997

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.96  E-value=3.6e-30  Score=203.91  Aligned_cols=162  Identities=12%  Similarity=0.071  Sum_probs=129.9

Q ss_pred             cccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEec---CccccccccchheeehhhhccCCCCccc
Q 036195            7 PHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAV---SLQKKISVCSFILIRRAYFFKLPNLKSI   81 (183)
Q Consensus         7 ~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~---~~~~~~~~~~~~~l~~~~lg~lp~l~~l   81 (183)
                      ++++  +++|+.||.+|++||||||||||||+|+||..|++|.|.++|+   |.++.       ......+|++.|...+
T Consensus        16 ~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~-------~~~~R~VGfvFQ~YAL   88 (345)
T COG1118          16 GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNL-------AVRDRKVGFVFQHYAL   88 (345)
T ss_pred             cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhcc-------chhhcceeEEEechhh
Confidence            4555  5569999999999999999999999999999999999999998   54431       0011223333322222


Q ss_pred             ccc---------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---cccccc
Q 036195           82 CHE---------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWD  131 (183)
Q Consensus        82 ~~~---------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~  131 (183)
                      |..                     ....++.+.++.+.++.+.++++.+|||||+|+      ++-+|+.+   ||+.--
T Consensus        89 F~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~AL  168 (345)
T COG1118          89 FPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGAL  168 (345)
T ss_pred             cccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhh
Confidence            211                     112346778999999999999999999999983      36778775   889999


Q ss_pred             CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      |...+..+...+..+......+++++|||.+++++.+|||..+.
T Consensus       169 Da~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~  212 (345)
T COG1118         169 DAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLN  212 (345)
T ss_pred             hHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEec
Confidence            99999999999999999999999999999999999999999874

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.96  E-value=8.8e-30  Score=192.65  Aligned_cols=169  Identities=15%  Similarity=0.123  Sum_probs=136.8

Q ss_pred             ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccc----------------cccccchhee
Q 036195            6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQK----------------KISVCSFILI   67 (183)
Q Consensus         6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~----------------~~~~~~~~~l   67 (183)
                      +.+++  ||++.+||+.+|+||||||||||||.++|-+.|++|++.++|.++..                ....++|++.
T Consensus        14 r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~   93 (259)
T COG4559          14 RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQ   93 (259)
T ss_pred             ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHH
Confidence            45666  55689999999999999999999999999999999999999987543                2234778888


Q ss_pred             ehhhhccCCCCccccccccchHHHHHHHHcCCCCccCCCCCCCChhhhhee------------cCchhhc---ccccccC
Q 036195           68 RRAYFFKLPNLKSICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGVL------------IGEEEWW---NQLEWDD  132 (183)
Q Consensus        68 ~~~~lg~lp~l~~l~~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~i------------~~~~~w~---~~l~~~d  132 (183)
                      +.+.+|+.|....-.......-..++|+..+|..+..+...+|||||+|++            ..++.|+   ||.+-.|
T Consensus        94 eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLD  173 (259)
T COG4559          94 EVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALD  173 (259)
T ss_pred             HHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccc
Confidence            888899888654322111122257889999999999999999999998732            2334464   7888889


Q ss_pred             cccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          133 EATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ...++....+...+..+ ..+++.+-|||+.+-..|||++|+-
T Consensus       174 i~HQ~~tl~laR~la~~-g~~V~~VLHDLNLAA~YaDrivll~  215 (259)
T COG4559         174 IAHQHHTLRLARQLARE-GGAVLAVLHDLNLAAQYADRIVLLH  215 (259)
T ss_pred             hHHHHHHHHHHHHHHhc-CCcEEEEEccchHHHHhhheeeeee
Confidence            88888888888877777 5999999999999999999999974

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.96  E-value=7.4e-30  Score=200.22  Aligned_cols=168  Identities=14%  Similarity=0.081  Sum_probs=127.4

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|++  |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...... ... .....++++++...++.
T Consensus        13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~-~~~-~~~~~i~~v~q~~~~~~   90 (235)
T cd03261          13 RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEA-ELY-RLRRRMGMLFQSGALFD   90 (235)
T ss_pred             EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChh-hHH-HHhcceEEEccCcccCC
Confidence            457875  56999999999999999999999999999999999999999765421000 000 00012333333221111


Q ss_pred             c--------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcc
Q 036195           84 E--------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEA  134 (183)
Q Consensus        84 ~--------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~  134 (183)
                      .                    .......++++.+++....++++.+|||||+|+      +..+|+.+   ||....|+.
T Consensus        91 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~  170 (235)
T cd03261          91 SLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPI  170 (235)
T ss_pred             CCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHH
Confidence            0                    001124567889999988899999999999983      37788887   999999999


Q ss_pred             cccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          135 TKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      .+..+..++..+..+...+|+++|||++.+...||+++.++
T Consensus       171 ~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~  211 (235)
T cd03261         171 ASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLY  211 (235)
T ss_pred             HHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEE
Confidence            99999999988766557899999999999999999999996

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=99.95  E-value=8.4e-30  Score=197.70  Aligned_cols=168  Identities=15%  Similarity=0.021  Sum_probs=126.6

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|++  |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...... .........++++++...++.
T Consensus        17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~-~~~~~~~~~i~~~~q~~~~~~   95 (218)
T cd03255          17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEK-ELAAFRRRHIGFVFQSFNLLP   95 (218)
T ss_pred             eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchh-HHHHHHhhcEEEEeeccccCC
Confidence            468875  56899999999999999999999999999999999999999866421000 000000012233333221111


Q ss_pred             c-------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195           84 E-------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT  135 (183)
Q Consensus        84 ~-------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~  135 (183)
                      .                   .......++++.+++....++++.+||+||+|+      ++.+|+.+   ||....|+..
T Consensus        96 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~  175 (218)
T cd03255          96 DLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSET  175 (218)
T ss_pred             CCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHH
Confidence            0                   001235678889999988899999999999983      47788887   9999999999


Q ss_pred             ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+..++..+..+...+|+++|||++++. .||+++.++
T Consensus       176 ~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~  214 (218)
T cd03255         176 GKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELR  214 (218)
T ss_pred             HHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEee
Confidence            999999999886645789999999999986 999999986

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.95  E-value=1.3e-29  Score=195.72  Aligned_cols=168  Identities=18%  Similarity=0.053  Sum_probs=128.1

Q ss_pred             ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      .++|+  +|+|++||+++|+|||||||||||++|.|+.+|++|.|.++|.++..... ......+...+|++.|...+.+
T Consensus        18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~-~~~~~~R~~~iGfvFQ~~nLl~   96 (226)
T COG1136          18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSE-KELAKLRRKKIGFVFQNFNLLP   96 (226)
T ss_pred             eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCH-HHHHHHHHHhEEEECccCCCCC
Confidence            46787  55699999999999999999999999999999999999999987764211 0112233344555544333322


Q ss_pred             ccc-------------------chHHHHHHHHcCCCCccC-CCCCCCChhhhhe------ecCchhhc---ccccccCcc
Q 036195           84 EAL-------------------AFPCLERIYVHGCPSLRK-LPFSLESGKRNGV------LIGEEEWW---NQLEWDDEA  134 (183)
Q Consensus        84 ~~~-------------------~~~~l~vLe~l~L~~L~~-~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~  134 (183)
                      ...                   .....++++.+++.+..+ .++.+|||||+|+      +..+|+.+   ||..--|..
T Consensus        97 ~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~  176 (226)
T COG1136          97 DLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSK  176 (226)
T ss_pred             CCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChH
Confidence            211                   112456678889985555 8899999999984      36777776   889999998


Q ss_pred             cccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          135 TKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +-..+..++..+..+...+++|++||.+..- .|||+|-+-
T Consensus       177 t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~-~~dr~i~l~  216 (226)
T COG1136         177 TAKEVLELLRELNKERGKTIIMVTHDPELAK-YADRVIELK  216 (226)
T ss_pred             HHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH-hCCEEEEEe
Confidence            8899999999998888999999999988765 899998763

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.95  E-value=7.9e-30  Score=211.12  Aligned_cols=169  Identities=15%  Similarity=0.117  Sum_probs=132.6

Q ss_pred             ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++++  ||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...... .........+++++|...++.
T Consensus         6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~-~~~~~rr~~i~~v~Q~~~l~~   84 (363)
T TIGR01186         6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPV-ELREVRRKKIGMVFQQFALFP   84 (363)
T ss_pred             ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHH-HHHHHHhCcEEEEECCCcCCC
Confidence            45677  556999999999999999999999999999999999999999877532100 000001123444444433332


Q ss_pred             cc-------------------cchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195           84 EA-------------------LAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT  135 (183)
Q Consensus        84 ~~-------------------~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~  135 (183)
                      +.                   ....+.++++.+++..+.++++.+|||||+|+      ++.+|+.+   ||+...|+.+
T Consensus        85 ~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~  164 (363)
T TIGR01186        85 HMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLI  164 (363)
T ss_pred             CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence            10                   11235678999999999999999999999983      47888887   9999999999


Q ss_pred             ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..++..+..+..+...+|+++|||++++++.||+++.++
T Consensus       165 r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~  204 (363)
T TIGR01186       165 RDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMK  204 (363)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence            9999999998876668899999999999999999999986

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=99.95  E-value=1.1e-29  Score=206.36  Aligned_cols=163  Identities=17%  Similarity=0.149  Sum_probs=127.1

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|++  |++++||++||+||||||||||+++|+|+++|++|+|.++|.++....      ......++++++...++.
T Consensus        17 ~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~------~~~~~~i~~v~q~~~~~~   90 (303)
T TIGR01288        17 KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRA------RLARVAIGVVPQFDNLDP   90 (303)
T ss_pred             eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccH------HHHhhcEEEEeccccCCc
Confidence            357875  569999999999999999999999999999999999999998654210      000112333333222211


Q ss_pred             c---------------c----cchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195           84 E---------------A----LAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT  135 (183)
Q Consensus        84 ~---------------~----~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~  135 (183)
                      .               .    ......++++.+++....++++.+|||||+|+      +..+|+++   ||....|+..
T Consensus        91 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~  170 (303)
T TIGR01288        91 EFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHA  170 (303)
T ss_pred             CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHH
Confidence            0               0    01123467888999999999999999999983      47888887   9999999999


Q ss_pred             ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+..++..+..+ ..+|+++|||++++.+.||++++++
T Consensus       171 ~~~l~~~l~~~~~~-g~til~~sH~~~~~~~~~d~i~~l~  209 (303)
T TIGR01288       171 RHLIWERLRSLLAR-GKTILLTTHFMEEAERLCDRLCVLE  209 (303)
T ss_pred             HHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEEE
Confidence            99999999887654 7899999999999999999999996

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=99.95  E-value=1.1e-29  Score=196.40  Aligned_cols=163  Identities=10%  Similarity=0.026  Sum_probs=126.8

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      ++++++  |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....      . ...++++++...++.
T Consensus        13 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~------~-~~~i~~~~q~~~~~~   85 (213)
T cd03301          13 VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPP------K-DRDIAMVFQNYALYP   85 (213)
T ss_pred             eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc------c-cceEEEEecChhhcc
Confidence            367875  4589999999999999999999999999999999999999987642100      0 012223222211111


Q ss_pred             -------------------cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195           84 -------------------EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT  135 (183)
Q Consensus        84 -------------------~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~  135 (183)
                                         ........++++.+++....+.++.+||+||+|+      +..+|+.+   ||....|+.+
T Consensus        86 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~  165 (213)
T cd03301          86 HMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKL  165 (213)
T ss_pred             CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence                               0001134567888999888999999999999983      36788887   9999999999


Q ss_pred             ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+..++..+..+...+++++|||++++...||+++.++
T Consensus       166 ~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~  205 (213)
T cd03301         166 RVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMN  205 (213)
T ss_pred             HHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEE
Confidence            9999999988876667899999999999999999999985

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=99.95  E-value=1.3e-29  Score=196.39  Aligned_cols=167  Identities=11%  Similarity=0.003  Sum_probs=127.3

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|++  |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...... .... ....++++++...++.
T Consensus        16 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~-~~~~-~~~~i~~~~q~~~~~~   93 (216)
T TIGR00960        16 QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGR-EIPF-LRRHIGMVFQDHRLLS   93 (216)
T ss_pred             eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChh-HHHH-HHHhceEEecCccccc
Confidence            357875  56899999999999999999999999999999999999999876421000 0000 0012333333322211


Q ss_pred             c-------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195           84 E-------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT  135 (183)
Q Consensus        84 ~-------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~  135 (183)
                      .                   .......++++.+++....++++.+|||||+|+      +..+|+.+   ||+...|+..
T Consensus        94 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~  173 (216)
T TIGR00960        94 DRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPEL  173 (216)
T ss_pred             cccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHH
Confidence            1                   011235667899999998999999999999983      47788887   9999999999


Q ss_pred             ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+..++..+..+ ..+++++|||++.+.+.||+++.++
T Consensus       174 ~~~l~~~l~~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~  212 (216)
T TIGR00960       174 SRDIMRLFEEFNRR-GTTVLVATHDINLVETYRHRTLTLS  212 (216)
T ss_pred             HHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEe
Confidence            99999999877554 7889999999999999999999985

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.95  E-value=1e-29  Score=196.34  Aligned_cols=164  Identities=18%  Similarity=0.116  Sum_probs=126.1

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcc--c
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKS--I   81 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~--l   81 (183)
                      +++|+++  ++++||+++|+||||||||||+++|+|+++|++|+|.++|.++....    ... ....++++++...  +
T Consensus        14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~----~~~-~~~~i~~~~q~~~~~~   88 (211)
T cd03225          14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLS----LKE-LRRKVGLVFQNPDDQF   88 (211)
T ss_pred             eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCC----HHH-HHhhceEEecChhhhc
Confidence            4678754  58999999999999999999999999999999999999997654210    000 0012233332210  1


Q ss_pred             cc-----c-------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcc
Q 036195           82 CH-----E-------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEA  134 (183)
Q Consensus        82 ~~-----~-------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~  134 (183)
                      +.     +             .......++++.+++....++++.+|||||+|+      ++.+|+.+   ||+...|+.
T Consensus        89 ~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~  168 (211)
T cd03225          89 FGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPA  168 (211)
T ss_pred             CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence            10     0             001134567888999888899999999999983      47788887   999999999


Q ss_pred             cccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          135 TKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      .+..+..++.....+ .++++++|||++++.+.||++++++
T Consensus       169 ~~~~~~~~l~~~~~~-~~tvi~~sH~~~~~~~~~d~i~~l~  208 (211)
T cd03225         169 GRRELLELLKKLKAE-GKTIIIVTHDLDLLLELADRVIVLE  208 (211)
T ss_pred             HHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEe
Confidence            999999999877665 7899999999999999999999986

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=99.95  E-value=1.4e-29  Score=195.54  Aligned_cols=158  Identities=15%  Similarity=0.080  Sum_probs=124.3

Q ss_pred             cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc-------
Q 036195           11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH-------   83 (183)
Q Consensus        11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~-------   83 (183)
                      ||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++......       ...++++++...++.       
T Consensus        18 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~-------~~~i~~~~q~~~~~~~~tv~en   90 (211)
T cd03298          18 DLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPA-------DRPVSMLFQENNLFAHLTVEQN   90 (211)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHh-------HccEEEEecccccCCCCcHHHH
Confidence            678999999999999999999999999999999999999999865421000       001122221111110       


Q ss_pred             ------------cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccc
Q 036195           84 ------------EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSK  142 (183)
Q Consensus        84 ------------~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~  142 (183)
                                  ........++++.+++....+.++.+||+||+|+      +..+|+++   ||+...|+..+..+..+
T Consensus        91 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~  170 (211)
T cd03298          91 VGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDL  170 (211)
T ss_pred             HhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence                        0011235678899999988899999999999983      37788887   99999999999999999


Q ss_pred             eeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          143 LIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+..+..++|+++|||++.+...||++++++
T Consensus       171 l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~  203 (211)
T cd03298         171 VLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLD  203 (211)
T ss_pred             HHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEE
Confidence            998766668899999999999999999999986

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=99.95  E-value=1.2e-29  Score=196.90  Aligned_cols=162  Identities=12%  Similarity=0.020  Sum_probs=127.5

Q ss_pred             ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195            7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE   84 (183)
Q Consensus         7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~   84 (183)
                      +++++  |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++....     ... ...++++++...++..
T Consensus        19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-----~~~-~~~i~~~~q~~~~~~~   92 (218)
T cd03266          19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEP-----AEA-RRRLGFVSDSTGLYDR   92 (218)
T ss_pred             eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCH-----HHH-HhhEEEecCCcccCcC
Confidence            68875  568999999999999999999999999999999999999998764210     000 1123333333222211


Q ss_pred             -------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccc
Q 036195           85 -------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATK  136 (183)
Q Consensus        85 -------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~  136 (183)
                                         .......++++.+++....++++.+||+||+|+      +..+|+++   ||....|+..+
T Consensus        93 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~  172 (218)
T cd03266          93 LTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMAT  172 (218)
T ss_pred             CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHH
Confidence                               001234668899999999999999999999983      47888887   89999999999


Q ss_pred             cccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          137 HVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ..+..++..+..+ ..+++++|||.+.+...+|+++.++
T Consensus       173 ~~l~~~l~~~~~~-~~tii~~tH~~~~~~~~~d~i~~l~  210 (218)
T cd03266         173 RALREFIRQLRAL-GKCILFSTHIMQEVERLCDRVVVLH  210 (218)
T ss_pred             HHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhcCEEEEEE
Confidence            9999999887544 7899999999999999999999985

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=99.95  E-value=2.4e-29  Score=204.19  Aligned_cols=162  Identities=15%  Similarity=0.077  Sum_probs=128.8

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +.+|++  |++++||++||+||||||||||+++|+|+++|++|+|.++|.++....      ......++++|+...++.
T Consensus        15 ~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~------~~~~~~ig~~~q~~~l~~   88 (301)
T TIGR03522        15 QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNP------KEVQRNIGYLPEHNPLYL   88 (301)
T ss_pred             EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCh------HHHHhceEEecCCCCCCC
Confidence            357775  569999999999999999999999999999999999999998764310      000123444454433322


Q ss_pred             cc-------------------cchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195           84 EA-------------------LAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT  135 (183)
Q Consensus        84 ~~-------------------~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~  135 (183)
                      ..                   ......++++.+++....++++..||+||+|+      +..+|+.+   ||..+.|+.+
T Consensus        89 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~  168 (301)
T TIGR03522        89 DMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQ  168 (301)
T ss_pred             CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence            10                   01235667888999999999999999999983      48888887   9999999999


Q ss_pred             ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+..++..+..  ..+|+++||+++++.+.||++++|+
T Consensus       169 ~~~l~~~l~~~~~--~~tiii~sH~l~~~~~~~d~i~~l~  206 (301)
T TIGR03522       169 LVEIRNVIKNIGK--DKTIILSTHIMQEVEAICDRVIIIN  206 (301)
T ss_pred             HHHHHHHHHHhcC--CCEEEEEcCCHHHHHHhCCEEEEEE
Confidence            9999999988854  4899999999999999999999996

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=99.95  E-value=1.4e-29  Score=210.60  Aligned_cols=162  Identities=9%  Similarity=0.072  Sum_probs=131.0

Q ss_pred             cccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195            7 PHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE   84 (183)
Q Consensus         7 ~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~   84 (183)
                      ++|+  +|++++||+++|+|||||||||||++|+|+.+|++|+|.++|+++....     +.  ...+++++|...++..
T Consensus        28 ~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~-----~~--~r~ig~vfQ~~~lfp~  100 (375)
T PRK09452         28 EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVP-----AE--NRHVNTVFQSYALFPH  100 (375)
T ss_pred             EEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCC-----HH--HCCEEEEecCcccCCC
Confidence            5677  5679999999999999999999999999999999999999998764310     00  1223333333322221


Q ss_pred             c-------------------cchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccc
Q 036195           85 A-------------------LAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATK  136 (183)
Q Consensus        85 ~-------------------~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~  136 (183)
                      .                   ......++++.+++..+.++++.+|||||+|+      ++.+|+.+   ||+...|...+
T Consensus       101 ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r  180 (375)
T PRK09452        101 MTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLR  180 (375)
T ss_pred             CCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHH
Confidence            0                   01234677889999999999999999999983      47788887   89999999999


Q ss_pred             cccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          137 HVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ..+...+..+..+..++++++|||.+++++.+|++++++
T Consensus       181 ~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~  219 (375)
T PRK09452        181 KQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMR  219 (375)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence            999999998888778999999999999999999999986

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=99.95  E-value=1.7e-29  Score=209.29  Aligned_cols=162  Identities=13%  Similarity=0.089  Sum_probs=130.1

Q ss_pred             ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCC--cEEEEEecCccccccccchheeehhhhccCCCCcccc
Q 036195            7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMS--HKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSIC   82 (183)
Q Consensus         7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~--G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~   82 (183)
                      ++|++  |++++||+++|+|||||||||||++|+|+.+|++  |+|.++|.++....     +  ....++++++...++
T Consensus        19 ~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~-----~--~~r~ig~vfQ~~~l~   91 (362)
T TIGR03258        19 TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAP-----P--HKRGLALLFQNYALF   91 (362)
T ss_pred             EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCC-----H--HHCCEEEEECCcccC
Confidence            57775  5689999999999999999999999999999999  99999998764310     0  011233333332222


Q ss_pred             cc-------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcc
Q 036195           83 HE-------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEA  134 (183)
Q Consensus        83 ~~-------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~  134 (183)
                      ..                   .....+.++++.+++..+.++++.+|||||+|+      ++.+|+.+   ||+...|+.
T Consensus        92 p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~  171 (362)
T TIGR03258        92 PHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDAN  171 (362)
T ss_pred             CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHH
Confidence            11                   011235678999999999999999999999983      47788886   899999999


Q ss_pred             cccccccceeecCccc-ccCCCCCCceeeeeecccceEEEEe
Q 036195          135 TKHVFSSKLIITTPQT-VISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       135 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      .+..+...+..+..+. ..+++++|||++++++.||+++.++
T Consensus       172 ~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~  213 (362)
T TIGR03258       172 IRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMK  213 (362)
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence            9999999999887775 7899999999999999999999996

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=99.95  E-value=1.7e-29  Score=210.12  Aligned_cols=163  Identities=12%  Similarity=0.021  Sum_probs=129.6

Q ss_pred             ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|+  ||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++....     +  ....++++++...++.
T Consensus        16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~-----~--~~~~i~~v~Q~~~l~~   88 (369)
T PRK11000         16 VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVP-----P--AERGVGMVFQSYALYP   88 (369)
T ss_pred             eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCC-----H--hHCCEEEEeCCcccCC
Confidence            35777  4568999999999999999999999999999999999999998764310     0  0012333333322221


Q ss_pred             c-------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195           84 E-------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT  135 (183)
Q Consensus        84 ~-------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~  135 (183)
                      .                   .....+.++++.+++..+.++++.+|||||+|+      ++.+|+.+   ||+...|+..
T Consensus        89 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~  168 (369)
T PRK11000         89 HLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAAL  168 (369)
T ss_pred             CCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence            1                   001235678899999999999999999999983      47788887   8999999999


Q ss_pred             ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+...+..+..+...+++++|||++++++.||++++++
T Consensus       169 ~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~  208 (369)
T PRK11000        169 RVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLD  208 (369)
T ss_pred             HHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence            9999999988776667899999999999999999999997

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=99.95  E-value=9.4e-30  Score=199.23  Aligned_cols=165  Identities=13%  Similarity=0.062  Sum_probs=123.4

Q ss_pred             cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccc---ccc-----c---hheeehhhhccCCCCc
Q 036195           11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKI---SVC-----S---FILIRRAYFFKLPNLK   79 (183)
Q Consensus        11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~---~~~-----~---~~~l~~~~lg~lp~l~   79 (183)
                      ||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++....   .+.     .   .+..+.+.+.......
T Consensus         5 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~   84 (230)
T TIGR01184         5 NLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDRVLP   84 (230)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHHhccc
Confidence            6789999999999999999999999999999999999999998764311   000     0   0111111110000000


Q ss_pred             cccccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCccc
Q 036195           80 SICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQT  150 (183)
Q Consensus        80 ~l~~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~  150 (183)
                      ............++++.+++....++++.+|||||+|+      +..+|+++   ||....|+..+..+..++..+..+.
T Consensus        85 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~  164 (230)
T TIGR01184        85 DLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEH  164 (230)
T ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhc
Confidence            00000001124677888999988899999999999983      37788887   9999999999999999998776655


Q ss_pred             ccCCCCCCceeeeeecccceEEEEe
Q 036195          151 VISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ..+|+++|||++.+.+.||++++++
T Consensus       165 ~~tii~~sH~~~~~~~~~d~v~~l~  189 (230)
T TIGR01184       165 RVTVLMVTHDVDEALLLSDRVVMLT  189 (230)
T ss_pred             CCEEEEEeCCHHHHHHhcCEEEEEe
Confidence            7899999999999999999999996

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.95  E-value=5.5e-30  Score=196.44  Aligned_cols=171  Identities=16%  Similarity=0.127  Sum_probs=136.8

Q ss_pred             cccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccc-------------------cccc
Q 036195            5 YRPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKI-------------------SVCS   63 (183)
Q Consensus         5 ~~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~-------------------~~~~   63 (183)
                      .+++|+  +|+|++||+++||||||||||||||+|+|+..|++|+|.++|.++.+..                   ....
T Consensus        16 ~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r   95 (258)
T COG3638          16 GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPR   95 (258)
T ss_pred             CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCcccc
Confidence            356777  4569999999999999999999999999999999999999998765421                   1122


Q ss_pred             hheeehhhhccCCCC---cccccccc---chHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccc
Q 036195           64 FILIRRAYFFKLPNL---KSICHEAL---AFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQL  128 (183)
Q Consensus        64 ~~~l~~~~lg~lp~l---~~l~~~~~---~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l  128 (183)
                      .++++.+..+++...   .+++..+.   ....+++++.+|+.+.+-++.++|||||+|+      +..+|+.+   ||+
T Consensus        96 ~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADEPv  175 (258)
T COG3638          96 LSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPV  175 (258)
T ss_pred             cHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEEecCCcc
Confidence            334444444444332   23333222   2347889999999999999999999999983      36778876   999


Q ss_pred             cccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          129 EWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       129 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ...||.+-..+..++..+..+..+++++..|+++.+.+.|+|+|.|+
T Consensus       176 asLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~  222 (258)
T COG3638         176 ASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLK  222 (258)
T ss_pred             cccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEec
Confidence            99999888888889999999989999999999999999999999986

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=1.7e-29  Score=208.31  Aligned_cols=168  Identities=17%  Similarity=0.074  Sum_probs=129.8

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|++  |++++||++||+||||||||||+|+|+|+++|++|+|.++|.++...... .... ....++++++...++.
T Consensus        18 ~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~-~~~~-~~~~ig~v~q~~~l~~   95 (343)
T PRK11153         18 IHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEK-ELRK-ARRQIGMIFQHFNLLS   95 (343)
T ss_pred             eEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHH-HHHH-HhcCEEEEeCCCccCC
Confidence            467875  56999999999999999999999999999999999999999876431000 0000 0112344443322221


Q ss_pred             c-------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195           84 E-------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT  135 (183)
Q Consensus        84 ~-------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~  135 (183)
                      .                   .......++++.+++..+.++++.+|||||+|+      ++.+|+.+   ||....|+.+
T Consensus        96 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~  175 (343)
T PRK11153         96 SRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPAT  175 (343)
T ss_pred             CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence            1                   001134567889999999999999999999983      47788887   8999999999


Q ss_pred             ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+..++..+..+...+++++|||++.+.+.||++++++
T Consensus       176 ~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~  215 (343)
T PRK11153        176 TRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVID  215 (343)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence            9999999998876668899999999999999999999996

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=99.95  E-value=3.9e-29  Score=194.20  Aligned_cols=162  Identities=17%  Similarity=0.131  Sum_probs=125.5

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|+++  ++++||+++|+||||||||||+++|+|+++|++|+|.++|.++....     .. ....++++++...++.
T Consensus        15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-----~~-~~~~i~~v~q~~~~~~   88 (220)
T cd03263          15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-----KA-ARQSLGYCPQFDALFD   88 (220)
T ss_pred             ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-----HH-HhhhEEEecCcCCccc
Confidence            4688754  59999999999999999999999999999999999999998764310     00 0012233333221111


Q ss_pred             c-------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195           84 E-------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT  135 (183)
Q Consensus        84 ~-------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~  135 (183)
                      .                   .......++++.+++....+.++.+||+||+|+      ++.+|+.+   ||+...|+..
T Consensus        89 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~  168 (220)
T cd03263          89 ELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPAS  168 (220)
T ss_pred             cCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHH
Confidence            0                   001234577888999888899999999999983      47788887   9999999999


Q ss_pred             ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+..++......  .+++++||+++.+.+.||+++.++
T Consensus       169 ~~~l~~~l~~~~~~--~tii~~sH~~~~~~~~~d~i~~l~  206 (220)
T cd03263         169 RRAIWDLILEVRKG--RSIILTTHSMDEAEALCDRIAIMS  206 (220)
T ss_pred             HHHHHHHHHHHhcC--CEEEEEcCCHHHHHHhcCEEEEEE
Confidence            99999999877643  789999999999999999999986

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=99.95  E-value=3.5e-29  Score=195.92  Aligned_cols=165  Identities=18%  Similarity=0.089  Sum_probs=125.8

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|++  |++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++....    ........++++++...++.
T Consensus        13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~----~~~~~~~~i~~~~q~~~~~~   88 (232)
T cd03218          13 RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLP----MHKRARLGIGYLPQEASIFR   88 (232)
T ss_pred             EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCC----HhHHHhccEEEecCCccccc
Confidence            357875  568999999999999999999999999999999999999998653210    00000011233333221111


Q ss_pred             c---------------c----cchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195           84 E---------------A----LAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT  135 (183)
Q Consensus        84 ~---------------~----~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~  135 (183)
                      .               .    ......++++.+++....+.++.+||+||+|+      +..+|+.+   ||+...|+..
T Consensus        89 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~  168 (232)
T cd03218          89 KLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIA  168 (232)
T ss_pred             cCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHH
Confidence            1               0    01124567888999988999999999999983      37788887   9999999999


Q ss_pred             ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+..++..+..+ ..+++++|||++.+.+.||++++++
T Consensus       169 ~~~~~~~l~~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~  207 (232)
T cd03218         169 VQDIQKIIKILKDR-GIGVLITDHNVRETLSITDRAYIIY  207 (232)
T ss_pred             HHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEE
Confidence            99999999877654 6789999999999999999999996

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.95  E-value=2.5e-29  Score=192.39  Aligned_cols=166  Identities=14%  Similarity=0.047  Sum_probs=134.9

Q ss_pred             ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      ..+|+  ||++++||+++|+|+||||||||||+|+|+.+|.+|+|.++|++++..    ++.......++++|+-+.+|.
T Consensus        16 ~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~----p~~~r~r~Gi~~VPegR~iF~   91 (237)
T COG0410          16 IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGL----PPHERARLGIAYVPEGRRIFP   91 (237)
T ss_pred             eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCC----CHHHHHhCCeEeCcccccchh
Confidence            34665  567999999999999999999999999999999999999999999864    334455567888888777776


Q ss_pred             cccchH------------------HHHHHHHc-CCCCccCCCCCCCChhhhh------eecCchhhc---ccccccCccc
Q 036195           84 EALAFP------------------CLERIYVH-GCPSLRKLPFSLESGKRNG------VLIGEEEWW---NQLEWDDEAT  135 (183)
Q Consensus        84 ~~~~~~------------------~l~vLe~l-~L~~L~~~~~~~LSgGqk~------~i~~~~~w~---~~l~~~d~~~  135 (183)
                      .....+                  ..++.+.+ .+.+.++++..+|||||+|      .++++|+.+   ||.++--|.+
T Consensus        92 ~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~i  171 (237)
T COG0410          92 RLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKI  171 (237)
T ss_pred             hCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHH
Confidence            533222                  22233333 2456788999999999998      358889886   8888888888


Q ss_pred             ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ...+...+..+..+...+|+.+.+|.+.++..+||.|+++
T Consensus       172 v~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle  211 (237)
T COG0410         172 VEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLE  211 (237)
T ss_pred             HHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEe
Confidence            8888888888888778999999999999999999999987

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=99.95  E-value=3.2e-29  Score=207.26  Aligned_cols=162  Identities=12%  Similarity=0.065  Sum_probs=129.7

Q ss_pred             ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195            7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE   84 (183)
Q Consensus         7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~   84 (183)
                      ++|++  |++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++....     +  ....+++++|...++..
T Consensus        16 ~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~-----~--~~r~i~~v~Q~~~l~p~   88 (353)
T PRK10851         16 QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLH-----A--RDRKVGFVFQHYALFRH   88 (353)
T ss_pred             EEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCC-----H--HHCCEEEEecCcccCCC
Confidence            57774  568999999999999999999999999999999999999998764310     0  00122232222211110


Q ss_pred             -----------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccC
Q 036195           85 -----------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDD  132 (183)
Q Consensus        85 -----------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d  132 (183)
                                             .......++++.+++..+.++++.+|||||+|+      +..+|+.+   ||+...|
T Consensus        89 ~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD  168 (353)
T PRK10851         89 MTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALD  168 (353)
T ss_pred             CcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence                                   011245678999999999999999999999983      47888887   8999999


Q ss_pred             cccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          133 EATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+..+...+..+..+...+++++|||++++++.||+++.++
T Consensus       169 ~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~  211 (353)
T PRK10851        169 AQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMS  211 (353)
T ss_pred             HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence            9999999999998887778999999999999999999999997

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=99.95  E-value=2.5e-29  Score=197.26  Aligned_cols=165  Identities=13%  Similarity=0.043  Sum_probs=125.3

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|++  |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....    .......++++++...++.
T Consensus        13 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~----~~~~~~~i~~v~q~~~l~~   88 (236)
T cd03219          13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPP----HEIARLGIGRTFQIPRLFP   88 (236)
T ss_pred             EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCH----HHHHhcCEEEEeccccccc
Confidence            357774  5689999999999999999999999999999999999999986542100    0000011222222111110


Q ss_pred             -----------------------------cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---
Q 036195           84 -----------------------------EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---  125 (183)
Q Consensus        84 -----------------------------~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---  125 (183)
                                                   ........++++.+++....+.++.+|||||+|+      +..+|+++   
T Consensus        89 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllD  168 (236)
T cd03219          89 ELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLD  168 (236)
T ss_pred             CCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence                                         0001135677888999988899999999999983      47788887   


Q ss_pred             ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          126 NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       126 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ||....|+..+..+..++..+..+ ..+++++|||++.+...||++++++
T Consensus       169 EPt~~LD~~~~~~l~~~l~~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~  217 (236)
T cd03219         169 EPAAGLNPEETEELAELIRELRER-GITVLLVEHDMDVVMSLADRVTVLD  217 (236)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEEEe
Confidence            899999999999999999877654 7889999999999999999999996

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=99.95  E-value=3e-29  Score=197.24  Aligned_cols=168  Identities=14%  Similarity=0.087  Sum_probs=127.0

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|++  |++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++...... . .......++++++...++.
T Consensus        14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~-~-~~~~~~~i~~~~q~~~~~~   91 (241)
T cd03256          14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGK-A-LRQLRRQIGMIFQQFNLIE   91 (241)
T ss_pred             cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHh-H-HHHHHhccEEEcccCcccc
Confidence            467875  56999999999999999999999999999999999999999865421000 0 0000011222222111110


Q ss_pred             ---------------------------cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---cc
Q 036195           84 ---------------------------EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQ  127 (183)
Q Consensus        84 ---------------------------~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~  127 (183)
                                                 ......+.++++.+++....+.++.+||+||+|+      ++.+|+.+   ||
T Consensus        92 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP  171 (241)
T cd03256          92 RLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEP  171 (241)
T ss_pred             cCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence                                       0011234567888999988899999999999983      47788887   99


Q ss_pred             ccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          128 LEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       128 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ....|+..+..+...+..+..+...+|+++|||++.+.+.||++++++
T Consensus       172 t~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~  219 (241)
T cd03256         172 VASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLK  219 (241)
T ss_pred             cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence            999999999999999988766557899999999999999999999996

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=99.95  E-value=3.4e-29  Score=196.98  Aligned_cols=163  Identities=11%  Similarity=0.011  Sum_probs=125.7

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|++  |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....     .  ...++++++...++.
T Consensus        15 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~-----~--~~~i~~v~q~~~~~~   87 (239)
T cd03296          15 FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV-----Q--ERNVGFVFQHYALFR   87 (239)
T ss_pred             EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc-----c--ccceEEEecCCcccC
Confidence            467875  5689999999999999999999999999999999999999976542100     0  011222222111110


Q ss_pred             ---------------------c--ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---cccccc
Q 036195           84 ---------------------E--ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWD  131 (183)
Q Consensus        84 ---------------------~--~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~  131 (183)
                                           .  .......++++.+++..+.+.++.+||+||+|+      +..+|+.+   ||+...
T Consensus        88 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~L  167 (239)
T cd03296          88 HMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGAL  167 (239)
T ss_pred             CCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence                                 0  001124567888999988899999999999983      46788887   999999


Q ss_pred             CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      |+..+..+..++..+..+...+++++|||++.+.+.||++++++
T Consensus       168 D~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~  211 (239)
T cd03296         168 DAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMN  211 (239)
T ss_pred             CHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence            99999999999988766557899999999999999999999996

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=99.95  E-value=5e-29  Score=206.26  Aligned_cols=164  Identities=13%  Similarity=0.072  Sum_probs=128.8

Q ss_pred             cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccccc----
Q 036195           11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHEAL----   86 (183)
Q Consensus        11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~~~----   86 (183)
                      ||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.........+. ....++++++...++....    
T Consensus        18 sl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~-~~~~i~~v~q~~~l~~~~tv~en   96 (352)
T PRK11144         18 NLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPP-EKRRIGYVFQDARLFPHYKVRGN   96 (352)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccch-hhCCEEEEcCCcccCCCCcHHHH
Confidence            67799999999999999999999999999999999999999987642100000000 0123455555433332111    


Q ss_pred             ---------chHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCc
Q 036195           87 ---------AFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTP  148 (183)
Q Consensus        87 ---------~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~  148 (183)
                               .....++++.+++..+.++++.+|||||+|+      ++.+|+.+   ||+...|+..+..+..++..+..
T Consensus        97 l~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~  176 (352)
T PRK11144         97 LRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAR  176 (352)
T ss_pred             HHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence                     1235678899999999999999999999983      47788886   89999999999999999988877


Q ss_pred             ccccCCCCCCceeeeeecccceEEEEe
Q 036195          149 QTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +...+++++|||++++++.||+++.++
T Consensus       177 ~~g~tii~vTHd~~~~~~~~d~i~~l~  203 (352)
T PRK11144        177 EINIPILYVSHSLDEILRLADRVVVLE  203 (352)
T ss_pred             hcCCeEEEEecCHHHHHHhCCEEEEEe
Confidence            667899999999999999999999996

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=3.9e-29  Score=198.28  Aligned_cols=166  Identities=8%  Similarity=0.023  Sum_probs=125.7

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|++  |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....    .......++++++...++.
T Consensus        18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~----~~~~~~~i~~~~q~~~~~~   93 (255)
T PRK11300         18 LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPG----HQIARMGVVRTFQHVRLFR   93 (255)
T ss_pred             EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCH----HHHHhcCeEEeccCcccCC
Confidence            357774  4689999999999999999999999999999999999999986542100    0000001111111110000


Q ss_pred             --------------------------------c--ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchh
Q 036195           84 --------------------------------E--ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEE  123 (183)
Q Consensus        84 --------------------------------~--~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~  123 (183)
                                                      .  .....+.++++.+++..+.+.++.+||+||+|+      +..+|+
T Consensus        94 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~  173 (255)
T PRK11300         94 EMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPE  173 (255)
T ss_pred             CCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence                                            0  001134566888999989999999999999983      477888


Q ss_pred             hc---ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          124 WW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       124 w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      .+   ||+...|+..+..+..++..+..+...+|+++||+++.+...||++++|+
T Consensus       174 llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~  228 (255)
T PRK11300        174 ILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVN  228 (255)
T ss_pred             EEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence            87   89999999999999999998876667899999999999999999999997

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=99.95  E-value=4.5e-29  Score=196.58  Aligned_cols=168  Identities=13%  Similarity=0.082  Sum_probs=126.4

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|++  |++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++...... .... ....++++++...++.
T Consensus        15 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~-~~~~-~~~~i~~v~q~~~~~~   92 (243)
T TIGR02315        15 KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGK-KLRK-LRRRIGMIFQHYNLIE   92 (243)
T ss_pred             cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHH-HHHH-HHhheEEEcCCCcccc
Confidence            357874  56899999999999999999999999999999999999999765421000 0000 0011222222111110


Q ss_pred             ---------------------------cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---cc
Q 036195           84 ---------------------------EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQ  127 (183)
Q Consensus        84 ---------------------------~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~  127 (183)
                                                 ......+.++++.+++....++++.+|||||+|+      +..+|+.+   ||
T Consensus        93 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEP  172 (243)
T TIGR02315        93 RLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEP  172 (243)
T ss_pred             cccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence                                       0011235677888999988899999999999983      37788886   89


Q ss_pred             ccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          128 LEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       128 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ....|+..+..+..++..+..+...+++++|||++.+.+.||++++++
T Consensus       173 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~  220 (243)
T TIGR02315       173 IASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLK  220 (243)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEE
Confidence            999999999999999988766557899999999999999999999996

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=99.95  E-value=3.7e-29  Score=193.11  Aligned_cols=160  Identities=14%  Similarity=0.068  Sum_probs=125.0

Q ss_pred             ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++++  +|++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++...         ....++++++...++.
T Consensus        13 ~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~---------~~~~i~~~~q~~~~~~   83 (210)
T cd03269          13 VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIA---------ARNRIGYLPEERGLYP   83 (210)
T ss_pred             EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHH---------HHccEEEeccCCcCCc
Confidence            35776  556999999999999999999999999999999999999999865320         0011222222111111


Q ss_pred             -------------------cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195           84 -------------------EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT  135 (183)
Q Consensus        84 -------------------~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~  135 (183)
                                         ........++++.+++....+.++.+||+||+|+      ++.+|+.+   ||....|+..
T Consensus        84 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~  163 (210)
T cd03269          84 KMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVN  163 (210)
T ss_pred             CCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHH
Confidence                               0011235677888999888899999999999983      36788887   9999999999


Q ss_pred             ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+..++.....+ ..+++++||+++.+...||++++++
T Consensus       164 ~~~~~~~l~~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~  202 (210)
T cd03269         164 VELLKDVIRELARA-GKTVILSTHQMELVEELCDRVLLLN  202 (210)
T ss_pred             HHHHHHHHHHHHHC-CCEEEEECCCHHHHHHhhhEEEEEe
Confidence            99999999877655 6899999999999999999999985

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.95  E-value=3.5e-29  Score=192.62  Aligned_cols=161  Identities=16%  Similarity=0.069  Sum_probs=125.6

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc--cc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK--SI   81 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~--~l   81 (183)
                      +++|++  |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++....        ....++++++..  .+
T Consensus        13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--------~~~~i~~~~q~~~~~~   84 (205)
T cd03226          13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKE--------RRKSIGYVMQDVDYQL   84 (205)
T ss_pred             CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHH--------hhcceEEEecChhhhh
Confidence            467875  568999999999999999999999999999999999999998753210        000112222211  00


Q ss_pred             c------------c--cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccc
Q 036195           82 C------------H--EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHV  138 (183)
Q Consensus        82 ~------------~--~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~  138 (183)
                      +            .  ........++++.+++....++++.+||+||+|+      +..+|+.+   ||....|+..+..
T Consensus        85 ~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~  164 (205)
T cd03226          85 FTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMER  164 (205)
T ss_pred             hhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHH
Confidence            0            0  0011245778999999999999999999999983      36788887   9999999999999


Q ss_pred             cccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          139 FSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..++.....+ ..+++++|||++.+.+.||++++++
T Consensus       165 l~~~l~~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~  200 (205)
T cd03226         165 VGELIRELAAQ-GKAVIVITHDYEFLAKVCDRVLLLA  200 (205)
T ss_pred             HHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEE
Confidence            99999887654 7889999999999999999999986

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=5.3e-29  Score=197.84  Aligned_cols=160  Identities=13%  Similarity=0.061  Sum_probs=125.2

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccc-
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSIC-   82 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~-   82 (183)
                      ++++++  |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....          .++++++...++ 
T Consensus        14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~----------~~~~v~q~~~~~~   83 (255)
T PRK11248         14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGA----------ERGVVFQNEGLLP   83 (255)
T ss_pred             eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCC----------cEEEEeCCCccCC
Confidence            357775  5699999999999999999999999999999999999999987642100          011111111110 


Q ss_pred             ------------------ccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195           83 ------------------HEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT  135 (183)
Q Consensus        83 ------------------~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~  135 (183)
                                        .........++++.+++....++++.+|||||+|+      +..+|+.+   ||....|+..
T Consensus        84 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~  163 (255)
T PRK11248         84 WRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFT  163 (255)
T ss_pred             CCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH
Confidence                              00011235678899999988899999999999983      47788887   9999999999


Q ss_pred             ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+..++..+..+...+++++|||++.+...||++++++
T Consensus       164 ~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~  203 (255)
T PRK11248        164 REQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLS  203 (255)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence            9999999987754447889999999999999999999996

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=99.95  E-value=6.1e-29  Score=193.25  Aligned_cols=168  Identities=15%  Similarity=0.060  Sum_probs=125.5

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      ++++++  |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...... .........++++++...++.
T Consensus        18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~-~~~~~~~~~i~~v~q~~~~~~   96 (221)
T TIGR02211        18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSN-ERAKLRNKKLGFIYQFHHLLP   96 (221)
T ss_pred             eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHh-HHHHHHHhcEEEEecccccCC
Confidence            357875  56899999999999999999999999999999999999999876431000 000000012333333322221


Q ss_pred             c-------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195           84 E-------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT  135 (183)
Q Consensus        84 ~-------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~  135 (183)
                      .                   .....+.++++.+++....++++.+|||||+|+      ++.+|+.+   ||+...|+..
T Consensus        97 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~  176 (221)
T TIGR02211        97 DFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNN  176 (221)
T ss_pred             CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHH
Confidence            1                   001124567888999988899999999999983      47788887   9999999999


Q ss_pred             ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+..++..+..+...+++++|||++++. .+|++++++
T Consensus       177 ~~~l~~~l~~~~~~~~~tii~~tH~~~~~~-~~d~v~~l~  215 (221)
T TIGR02211       177 AKIIFDLMLELNRELNTSFLVVTHDLELAK-KLDRVLEMK  215 (221)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEeCCHHHHh-hcCEEEEEe
Confidence            999999998876655789999999999875 579999996

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=99.95  E-value=8.8e-29  Score=194.30  Aligned_cols=163  Identities=12%  Similarity=0.069  Sum_probs=124.8

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|+++  ++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++.....    ..  ...++++++...++.
T Consensus        14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~----~~--~~~i~~~~q~~~~~~   87 (236)
T TIGR03864        14 RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPR----AA--LARLGVVFQQPTLDL   87 (236)
T ss_pred             EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCCh----hh--hhhEEEeCCCCCCcc
Confidence            4678754  589999999999999999999999999999999999999986643100    00  012333333221110


Q ss_pred             c---------------c----cchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195           84 E---------------A----LAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT  135 (183)
Q Consensus        84 ~---------------~----~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~  135 (183)
                      .               .    ......++++.+++....+.++.+||+||+|+      ++.+|+.+   ||....|+..
T Consensus        88 ~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~  167 (236)
T TIGR03864        88 DLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPAS  167 (236)
T ss_pred             cCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHH
Confidence            0               0    01134567888999988899999999999983      37788887   8999999999


Q ss_pred             ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+..++..+..+...+++++|||++.+.. ||++++++
T Consensus       168 ~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~d~i~~l~  206 (236)
T TIGR03864       168 RAAIVAHVRALCRDQGLSVLWATHLVDEIEA-DDRLVVLH  206 (236)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEEecChhhHhh-CCEEEEEe
Confidence            9999999987765457889999999999965 99999996

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=99.95  E-value=6.6e-29  Score=194.54  Aligned_cols=167  Identities=16%  Similarity=0.083  Sum_probs=128.3

Q ss_pred             ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195            7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE   84 (183)
Q Consensus         7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~   84 (183)
                      ++|++  |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...... .... ....++++++...++..
T Consensus        19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~-~~~~-~~~~i~~~~q~~~~~~~   96 (233)
T cd03258          19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGK-ELRK-ARRRIGMIFQHFNLLSS   96 (233)
T ss_pred             eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHH-HHHH-HHhheEEEccCcccCCC
Confidence            68875  56899999999999999999999999999999999999999876421000 0000 01123333333222211


Q ss_pred             -------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccc
Q 036195           85 -------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATK  136 (183)
Q Consensus        85 -------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~  136 (183)
                                         .......++++.+++..+.++++.+||+||+|+      +..+|+.+   ||+...|+..+
T Consensus        97 ~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~  176 (233)
T cd03258          97 RTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETT  176 (233)
T ss_pred             CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHH
Confidence                               001134667888999999999999999999883      36788876   89999999999


Q ss_pred             cccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          137 HVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ..+..++..+..+...+++++||+++.+.+.||+++.++
T Consensus       177 ~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~  215 (233)
T cd03258         177 QSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVME  215 (233)
T ss_pred             HHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence            999999998776667899999999999999999999985

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=4.9e-29  Score=208.63  Aligned_cols=167  Identities=14%  Similarity=0.117  Sum_probs=128.8

Q ss_pred             ccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc-
Q 036195            8 HLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE-   84 (183)
Q Consensus         8 ~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~-   84 (183)
                      +|+  ||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...... .........++++++...++.. 
T Consensus        43 ~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~-~l~~~~~~~igyv~Q~~~l~~~~  121 (400)
T PRK10070         43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDA-ELREVRRKKIAMVFQSFALMPHM  121 (400)
T ss_pred             EEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHH-HHHHHHhCCEEEEECCCcCCCCC
Confidence            566  556999999999999999999999999999999999999999876431000 0000001123444443322221 


Q ss_pred             ------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccccc
Q 036195           85 ------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKH  137 (183)
Q Consensus        85 ------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~  137 (183)
                                        .......++++.+++..+.++++.+|||||+|+      ++.+|+.+   ||+...|+.++.
T Consensus       122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~  201 (400)
T PRK10070        122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRT  201 (400)
T ss_pred             CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHH
Confidence                              001234678899999999999999999999983      47788887   999999999999


Q ss_pred             ccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          138 VFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      .++..+..+..+...+|+++|||++++.+.||++++++
T Consensus       202 ~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~  239 (400)
T PRK10070        202 EMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQ  239 (400)
T ss_pred             HHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEE
Confidence            99999988766567899999999999999999999986

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=6.2e-29  Score=207.00  Aligned_cols=162  Identities=12%  Similarity=0.053  Sum_probs=129.7

Q ss_pred             cccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195            7 PHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE   84 (183)
Q Consensus         7 ~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~   84 (183)
                      ++|+  +|++++||+++|+||||||||||||+|+|+.+|++|+|.++|+++....     +  ....+++++|...++..
T Consensus        33 ~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~-----~--~~r~ig~vfQ~~~lfp~  105 (377)
T PRK11607         33 HAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVP-----P--YQRPINMMFQSYALFPH  105 (377)
T ss_pred             EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCC-----H--HHCCEEEEeCCCccCCC
Confidence            5677  5669999999999999999999999999999999999999998764310     1  11234444443333321


Q ss_pred             cc-------------------chHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccc
Q 036195           85 AL-------------------AFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATK  136 (183)
Q Consensus        85 ~~-------------------~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~  136 (183)
                      ..                   .....++++.+++..+.++++.+|||||+|+      ++.+|+++   ||+...|...+
T Consensus       106 ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r  185 (377)
T PRK11607        106 MTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLR  185 (377)
T ss_pred             CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence            10                   1234678889999999999999999999983      47888887   89999999999


Q ss_pred             cccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          137 HVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ..+...+..+..+...+++++|||.+++++.+|+++.++
T Consensus       186 ~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~  224 (377)
T PRK11607        186 DRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMN  224 (377)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEe
Confidence            999888877766667899999999999999999999986

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=99.95  E-value=6.5e-29  Score=195.72  Aligned_cols=165  Identities=13%  Similarity=0.080  Sum_probs=127.5

Q ss_pred             ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|+  ||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++....    .... ...++++++...++.
T Consensus        14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~----~~~~-~~~i~~~~q~~~~~~   88 (242)
T cd03295          14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQD----PVEL-RRKIGYVIQQIGLFP   88 (242)
T ss_pred             ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCC----hHHh-hcceEEEccCccccC
Confidence            45777  4568999999999999999999999999999999999999998654210    0000 112333333322221


Q ss_pred             c-------------------ccchHHHHHHHHcCCCC--ccCCCCCCCChhhhhe------ecCchhhc---ccccccCc
Q 036195           84 E-------------------ALAFPCLERIYVHGCPS--LRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDE  133 (183)
Q Consensus        84 ~-------------------~~~~~~l~vLe~l~L~~--L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~  133 (183)
                      .                   .......++++.+++..  +.+.++.+||+||+|+      +..+|+.+   ||+...|+
T Consensus        89 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~  168 (242)
T cd03295          89 HMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDP  168 (242)
T ss_pred             CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCH
Confidence            0                   00123467788999986  7899999999999983      47788887   89999999


Q ss_pred             ccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          134 ATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ..+..+...+..+..+...+++++||+++.+.+.||+++.|+
T Consensus       169 ~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~  210 (242)
T cd03295         169 ITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMK  210 (242)
T ss_pred             HHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEE
Confidence            999999999988876657899999999999999999999986

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=99.95  E-value=6.1e-29  Score=191.66  Aligned_cols=162  Identities=17%  Similarity=0.061  Sum_probs=127.2

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|++  |++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++...      .. ....++++++...++.
T Consensus        13 ~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~------~~-~~~~i~~~~q~~~~~~   85 (208)
T cd03268          13 KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN------IE-ALRRIGALIEAPGFYP   85 (208)
T ss_pred             eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch------HH-HHhhEEEecCCCccCc
Confidence            367774  56899999999999999999999999999999999999999876421      00 0112333333322221


Q ss_pred             c---------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccccccc
Q 036195           84 E---------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVF  139 (183)
Q Consensus        84 ~---------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~  139 (183)
                      .               .......++++.+++....++++.+||+||+|+      +..+|+.+   ||....|+.++..+
T Consensus        86 ~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l  165 (208)
T cd03268          86 NLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKEL  165 (208)
T ss_pred             cCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHH
Confidence            1               011235667899999988999999999999983      47788887   99999999999999


Q ss_pred             ccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          140 SSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ..++.....+ ...++|+|||++++...||+++.++
T Consensus       166 ~~~l~~~~~~-~~tii~~tH~~~~~~~~~d~v~~l~  200 (208)
T cd03268         166 RELILSLRDQ-GITVLISSHLLSEIQKVADRIGIIN  200 (208)
T ss_pred             HHHHHHHHHC-CCEEEEEcCCHHHHHHhcCEEEEEE
Confidence            9999877653 7889999999999999999999996

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=4.4e-29  Score=201.39  Aligned_cols=166  Identities=19%  Similarity=0.159  Sum_probs=128.0

Q ss_pred             ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc--ccc
Q 036195            7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK--SIC   82 (183)
Q Consensus         7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~--~l~   82 (183)
                      ++|++  |++.+||++||+||||||||||+++|+|+++|++|+|.++|.++.....  .... ....++++++..  .++
T Consensus        21 ~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~--~~~~-~~~~ig~v~q~~~~~~~   97 (287)
T PRK13637         21 KALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKV--KLSD-IRKKVGLVFQYPEYQLF   97 (287)
T ss_pred             ceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCc--cHHH-HhhceEEEecCchhccc
Confidence            58885  5689999999999999999999999999999999999999987643100  0000 011233333321  011


Q ss_pred             c------------------cccchHHHHHHHHcCCC--CccCCCCCCCChhhhhe------ecCchhhc---ccccccCc
Q 036195           83 H------------------EALAFPCLERIYVHGCP--SLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDE  133 (183)
Q Consensus        83 ~------------------~~~~~~~l~vLe~l~L~--~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~  133 (183)
                      .                  ......+.++++.+++.  .+.++++.+|||||+|+      ++.+|+.+   ||....|+
T Consensus        98 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~  177 (287)
T PRK13637         98 EETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDP  177 (287)
T ss_pred             cccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCH
Confidence            0                  00012356789999997  67899999999999983      47788886   89999999


Q ss_pred             ccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          134 ATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ..+..+..++..+..+...+|+++|||++++.+.|||++.++
T Consensus       178 ~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~  219 (287)
T PRK13637        178 KGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMN  219 (287)
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence            999999999998876668899999999999999999999996

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=99.95  E-value=6.8e-29  Score=197.38  Aligned_cols=160  Identities=14%  Similarity=0.058  Sum_probs=124.9

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|++  |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++....          ..++++++...++.
T Consensus        25 ~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~----------~~i~~v~q~~~l~~   94 (257)
T PRK11247         25 RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAR----------EDTRLMFQDARLLP   94 (257)
T ss_pred             cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhh----------CceEEEecCccCCC
Confidence            357774  568999999999999999999999999999999999999886542110          01222222211111


Q ss_pred             -------------cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccccccccc
Q 036195           84 -------------EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSS  141 (183)
Q Consensus        84 -------------~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~  141 (183)
                                   ........++++.+++....+.++.+|||||+|+      +..+|+.+   ||....|+..+..+..
T Consensus        95 ~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~  174 (257)
T PRK11247         95 WKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQD  174 (257)
T ss_pred             CCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Confidence                         0011245678899999988899999999999983      36778876   8999999999999999


Q ss_pred             ceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          142 KLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ++..+..+...+++++|||++.+.+.||++++++
T Consensus       175 ~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~  208 (257)
T PRK11247        175 LIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIE  208 (257)
T ss_pred             HHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence            9987755557899999999999999999999996

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=99.95  E-value=6.3e-29  Score=192.22  Aligned_cols=169  Identities=15%  Similarity=0.127  Sum_probs=124.8

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccc---cccccc----------hheeehh
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQK---KISVCS----------FILIRRA   70 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~---~~~~~~----------~~~l~~~   70 (183)
                      ++++++  |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..   ...+.+          .+..+.+
T Consensus        12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~l   91 (213)
T cd03235          12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVV   91 (213)
T ss_pred             EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHHHH
Confidence            357774  5689999999999999999999999999999999999999976531   111000          0111111


Q ss_pred             hhccCCCCcc--ccccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccccccc
Q 036195           71 YFFKLPNLKS--ICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVF  139 (183)
Q Consensus        71 ~lg~lp~l~~--l~~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~  139 (183)
                      ..........  ...........++++.+++....++++.+|||||+|+      +..+|+.+   ||....|+..+..+
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l  171 (213)
T cd03235          92 LMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDI  171 (213)
T ss_pred             HhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence            1111000000  0000112245678899999888899999999999983      46788887   89999999999999


Q ss_pred             ccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          140 SSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ...+.....+ ..+++++|||++++.+.||+++.++
T Consensus       172 ~~~l~~~~~~-~~tvi~~sH~~~~~~~~~d~i~~l~  206 (213)
T cd03235         172 YELLRELRRE-GMTILVVTHDLGLVLEYFDRVLLLN  206 (213)
T ss_pred             HHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEc
Confidence            9999887654 7889999999999999999999986

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=99.95  E-value=9e-29  Score=197.89  Aligned_cols=169  Identities=14%  Similarity=0.091  Sum_probs=127.9

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|++  |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...... .........++++++...++.
T Consensus        37 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~-~~~~~~~~~i~~v~q~~~~~~  115 (269)
T cd03294          37 TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRK-ELRELRRKKISMVFQSFALLP  115 (269)
T ss_pred             ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChh-hhhhhhcCcEEEEecCcccCC
Confidence            346774  56899999999999999999999999999999999999999865421000 000000012334443322221


Q ss_pred             c-------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195           84 E-------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT  135 (183)
Q Consensus        84 ~-------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~  135 (183)
                      .                   .......++++.+++....++++.+||+||+|+      +..+|+.+   ||+...|+.+
T Consensus       116 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~  195 (269)
T cd03294         116 HRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLI  195 (269)
T ss_pred             CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHH
Confidence            1                   001134567888999988999999999999983      47788887   9999999999


Q ss_pred             ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+..++..+..+...+++++|||++.+.+.||++++++
T Consensus       196 ~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~  235 (269)
T cd03294         196 RREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMK  235 (269)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEE
Confidence            9999999988765557899999999999999999999996

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=8.1e-29  Score=194.06  Aligned_cols=158  Identities=14%  Similarity=0.083  Sum_probs=124.1

Q ss_pred             cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc-------
Q 036195           11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH-------   83 (183)
Q Consensus        11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~-------   83 (183)
                      ||++.+||++||+||||||||||+++|+|+++|++|+|.++|.++......       ...++++++...++.       
T Consensus        19 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~-------~~~i~~~~q~~~~~~~~tv~e~   91 (232)
T PRK10771         19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS-------RRPVSMLFQENNLFSHLTVAQN   91 (232)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChh-------hccEEEEecccccccCCcHHHH
Confidence            678999999999999999999999999999999999999999875421000       011222222111110       


Q ss_pred             ------------cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccc
Q 036195           84 ------------EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSK  142 (183)
Q Consensus        84 ------------~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~  142 (183)
                                  ......+.++++.+++....++++.+||+||+|+      +..+|+.+   ||....|+.++..+..+
T Consensus        92 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~  171 (232)
T PRK10771         92 IGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTL  171 (232)
T ss_pred             HhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence                        0011235678899999989999999999999983      47788776   89999999999999999


Q ss_pred             eeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          143 LIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+..+...+++++|||++.+...||++++++
T Consensus       172 l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~  204 (232)
T PRK10771        172 VSQVCQERQLTLLMVSHSLEDAARIAPRSLVVA  204 (232)
T ss_pred             HHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEE
Confidence            988766667899999999999999999999996

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=99.95  E-value=8.4e-29  Score=191.57  Aligned_cols=167  Identities=13%  Similarity=0.017  Sum_probs=126.5

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|++  |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...... .... ....++++++...++.
T Consensus        15 ~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~-~~~~-~~~~i~~~~q~~~~~~   92 (214)
T TIGR02673        15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGR-QLPL-LRRRIGVVFQDFRLLP   92 (214)
T ss_pred             ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHH-HHHH-HHhheEEEecChhhcc
Confidence            357875  56999999999999999999999999999999999999999876421000 0000 0012233333221111


Q ss_pred             c-------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195           84 E-------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT  135 (183)
Q Consensus        84 ~-------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~  135 (183)
                      .                   .......++++.+++....++++.+||+||+|+      ++.+|+.+   ||....|+..
T Consensus        93 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~  172 (214)
T TIGR02673        93 DRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDL  172 (214)
T ss_pred             CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHH
Confidence            0                   001234567888999888889999999999983      37788887   8999999999


Q ss_pred             ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+..++..+..+ ..+++++||+++++...||++++++
T Consensus       173 ~~~l~~~l~~~~~~-~~tii~~tH~~~~~~~~~d~i~~l~  211 (214)
T TIGR02673       173 SERILDLLKRLNKR-GTTVIVATHDLSLVDRVAHRVIILD  211 (214)
T ss_pred             HHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhcCEEEEec
Confidence            99999999987554 7899999999999999999999986

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=99.95  E-value=9.4e-29  Score=197.77  Aligned_cols=168  Identities=14%  Similarity=0.074  Sum_probs=126.5

Q ss_pred             ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|+  ||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...... ..... ...++++++...++.
T Consensus        20 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~-~~~~~-~~~i~~v~q~~~~~~   97 (269)
T PRK11831         20 RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRS-RLYTV-RKRMSMLFQSGALFT   97 (269)
T ss_pred             EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChh-hHHHH-hhcEEEEecccccCC
Confidence            35777  556999999999999999999999999999999999999999765421000 00000 011222222211111


Q ss_pred             c----------------c----cchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcc
Q 036195           84 E----------------A----LAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEA  134 (183)
Q Consensus        84 ~----------------~----~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~  134 (183)
                      .                .    ......++++.+++....++++.+|||||+|+      ++.+|+++   ||+...|+.
T Consensus        98 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~  177 (269)
T PRK11831         98 DMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPI  177 (269)
T ss_pred             CCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHH
Confidence            0                0    01124457888999988999999999999983      37788887   899999999


Q ss_pred             cccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          135 TKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ++..+..++..+..+...+|+++|||++.+.+.||++++++
T Consensus       178 ~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~  218 (269)
T PRK11831        178 TMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVA  218 (269)
T ss_pred             HHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEE
Confidence            99999999988766657899999999999999999999986

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=99.95  E-value=1.1e-28  Score=204.48  Aligned_cols=164  Identities=14%  Similarity=0.073  Sum_probs=126.6

Q ss_pred             cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc------
Q 036195           11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE------   84 (183)
Q Consensus        11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~------   84 (183)
                      +|++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.........+. ....++++++...++..      
T Consensus        17 sl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~-~~~~i~~v~q~~~l~~~~tv~en   95 (354)
T TIGR02142        17 DFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPP-EKRRIGYVFQEARLFPHLSVRGN   95 (354)
T ss_pred             EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccch-hhCCeEEEecCCccCCCCcHHHH
Confidence            67799999999999999999999999999999999999999987642100000000 01123333332222211      


Q ss_pred             -----------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccccccccccee
Q 036195           85 -----------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLI  144 (183)
Q Consensus        85 -----------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~  144 (183)
                                 .......++++.+++..+.++++.+|||||+|+      ++.+|+.+   ||+...|+..+..+...+.
T Consensus        96 l~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~  175 (354)
T TIGR02142        96 LRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLE  175 (354)
T ss_pred             HHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHH
Confidence                       001135678899999999999999999999983      47788887   8999999999999999999


Q ss_pred             ecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          145 ITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      .+..+...+++++|||++++...||++++++
T Consensus       176 ~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~  206 (354)
T TIGR02142       176 RLHAEFGIPILYVSHSLQEVLRLADRVVVLE  206 (354)
T ss_pred             HHHHhcCCEEEEEecCHHHHHHhCCEEEEEe
Confidence            8877667899999999999999999999996

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=99.95  E-value=8.3e-29  Score=206.07  Aligned_cols=168  Identities=11%  Similarity=0.050  Sum_probs=128.1

Q ss_pred             cccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEec----CccccccccchheeehhhhccCCCCcc
Q 036195            7 PHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAV----SLQKKISVCSFILIRRAYFFKLPNLKS   80 (183)
Q Consensus         7 ~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~----~~~~~~~~~~~~~l~~~~lg~lp~l~~   80 (183)
                      .+++  ||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+    ++..... ..........++++++...
T Consensus        38 ~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~-~~l~~~r~~~i~~vfQ~~~  116 (382)
T TIGR03415        38 VGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDA-ATLRRLRTHRVSMVFQKFA  116 (382)
T ss_pred             EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCH-HHHHHHhcCCEEEEECCCc
Confidence            3455  5679999999999999999999999999999999999999985    3321100 0000000012333333322


Q ss_pred             cccc-------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccC
Q 036195           81 ICHE-------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDD  132 (183)
Q Consensus        81 l~~~-------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d  132 (183)
                      ++..                   .......++++.+++....+.++.+|||||+|+      ++.+|+.+   ||+...|
T Consensus       117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD  196 (382)
T TIGR03415       117 LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALD  196 (382)
T ss_pred             CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCC
Confidence            2211                   011235678999999999999999999999983      47788887   8999999


Q ss_pred             cccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          133 EATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +.++..++..+..+..+...+|+++|||++++++.||++++++
T Consensus       197 ~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~  239 (382)
T TIGR03415       197 PLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIME  239 (382)
T ss_pred             HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence            9999999999998877668999999999999999999999996

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=8e-29  Score=200.18  Aligned_cols=169  Identities=17%  Similarity=0.087  Sum_probs=128.0

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc--cc
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK--SI   81 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~--~l   81 (183)
                      +++|+++  +|++||+++|+||||||||||+++|+|+++|++|+|.++|+++........... ....++++++..  .+
T Consensus        20 ~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~-~~~~ig~v~q~~~~~l   98 (290)
T PRK13634         20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP-LRKKVGIVFQFPEHQL   98 (290)
T ss_pred             ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH-HHhhEEEEeeCchhhh
Confidence            3588855  599999999999999999999999999999999999999987642100000000 001223333221  01


Q ss_pred             cc------------------cccchHHHHHHHHcCCC-CccCCCCCCCChhhhhe------ecCchhhc---ccccccCc
Q 036195           82 CH------------------EALAFPCLERIYVHGCP-SLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDE  133 (183)
Q Consensus        82 ~~------------------~~~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~  133 (183)
                      +.                  ......+.++++.+++. .+.++++.+||+||+|+      ++.+|+.+   ||....|+
T Consensus        99 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~  178 (290)
T PRK13634         99 FEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDP  178 (290)
T ss_pred             hhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCH
Confidence            10                  00112356788899996 67899999999999983      47888887   89999999


Q ss_pred             ccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          134 ATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      .++..+..++..+..+...+|+++|||++++.+.||||++|+
T Consensus       179 ~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~  220 (290)
T PRK13634        179 KGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMH  220 (290)
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence            999999999988877668899999999999999999999996

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=99.95  E-value=1e-28  Score=190.90  Aligned_cols=166  Identities=13%  Similarity=0.001  Sum_probs=126.3

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      ++++++  |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....  .... ....++++++...++.
T Consensus        13 ~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~--~~~~-~~~~i~~~~q~~~~~~   89 (213)
T cd03262          13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKK--NINE-LRQKVGMVFQQFNLFP   89 (213)
T ss_pred             eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccch--hHHH-HHhcceEEecccccCC
Confidence            357775  5689999999999999999999999999999999999999986632100  0000 0012333333221111


Q ss_pred             c--------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcc
Q 036195           84 E--------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEA  134 (183)
Q Consensus        84 ~--------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~  134 (183)
                      .                    .......++++.+++....++++.+||+||+|+      ++.+|+.+   ||....|+.
T Consensus        90 ~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~  169 (213)
T cd03262          90 HLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPE  169 (213)
T ss_pred             CCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHH
Confidence            0                    011134667888999888899999999999983      47788887   899999999


Q ss_pred             cccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          135 TKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      .+..+..++..+..+ ..+++++||+++.+.+.||++++++
T Consensus       170 ~~~~l~~~l~~~~~~-~~tvi~~sh~~~~~~~~~d~i~~l~  209 (213)
T cd03262         170 LVGEVLDVMKDLAEE-GMTMVVVTHEMGFAREVADRVIFMD  209 (213)
T ss_pred             HHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEe
Confidence            999999999987654 6889999999999999999999996

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK10908 cell division protein FtsE; Provisional

Probab=99.95  E-value=1.2e-28  Score=191.78  Aligned_cols=167  Identities=13%  Similarity=0.027  Sum_probs=125.8

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|++  |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...... .... ....++++++...++.
T Consensus        15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~-~~~~-~~~~i~~~~q~~~~~~   92 (222)
T PRK10908         15 RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNR-EVPF-LRRQIGMIFQDHHLLM   92 (222)
T ss_pred             CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChh-HHHH-HHhheEEEecCccccc
Confidence            357775  56899999999999999999999999999999999999999866421000 0000 0012233333221110


Q ss_pred             c---------------c----cchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195           84 E---------------A----LAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT  135 (183)
Q Consensus        84 ~---------------~----~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~  135 (183)
                      .               .    ....+.++++.+++....++++.+||+||+|+      +..+|+.+   ||+...|+..
T Consensus        93 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~  172 (222)
T PRK10908         93 DRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDAL  172 (222)
T ss_pred             cccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHH
Confidence            0               0    01124567888999888899999999999983      36788886   8999999999


Q ss_pred             ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+..++..+..+ ..+++++|||++++...||+++.++
T Consensus       173 ~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~  211 (222)
T PRK10908        173 SEGILRLFEEFNRV-GVTVLMATHDIGLISRRSYRMLTLS  211 (222)
T ss_pred             HHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEE
Confidence            99999999887654 6899999999999999999999997

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=1e-28  Score=199.32  Aligned_cols=167  Identities=13%  Similarity=0.070  Sum_probs=126.0

Q ss_pred             ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc--ccc
Q 036195            7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK--SIC   82 (183)
Q Consensus         7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~--~l~   82 (183)
                      ++|++  |++.+||+++|+||||||||||+++|+|+++|++|+|.++|+++.......... .....++++++..  .++
T Consensus        21 ~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~-~~~~~ig~v~q~~~~~~~   99 (287)
T PRK13641         21 KGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK-KLRKKVSLVFQFPEAQLF   99 (287)
T ss_pred             cceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH-HHHhceEEEEeChhhhhc
Confidence            58885  569999999999999999999999999999999999999998763210000000 0001122222211  010


Q ss_pred             -----c-------------cccchHHHHHHHHcCCC-CccCCCCCCCChhhhhe------ecCchhhc---ccccccCcc
Q 036195           83 -----H-------------EALAFPCLERIYVHGCP-SLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEA  134 (183)
Q Consensus        83 -----~-------------~~~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~  134 (183)
                           .             ......+.++++.+++. .+.++++.+||+||+|+      ++.+|+.+   ||....|+.
T Consensus       100 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~  179 (287)
T PRK13641        100 ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPE  179 (287)
T ss_pred             cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHH
Confidence                 0             00112356778899997 68899999999999983      47788887   999999999


Q ss_pred             cccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          135 TKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      .+..+..++..+..+ ..+|+++|||++.+.+.||+++.|+
T Consensus       180 ~~~~l~~~l~~l~~~-g~tvlivsH~~~~~~~~~d~v~~l~  219 (287)
T PRK13641        180 GRKEMMQLFKDYQKA-GHTVILVTHNMDDVAEYADDVLVLE  219 (287)
T ss_pred             HHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEE
Confidence            999999999887544 7899999999999999999999997

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=99.94  E-value=5.7e-29  Score=186.87  Aligned_cols=158  Identities=15%  Similarity=0.057  Sum_probs=127.5

Q ss_pred             cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc------
Q 036195           11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE------   84 (183)
Q Consensus        11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~------   84 (183)
                      ||++++||++||+|||||||||+||+|++++.|++|.|+++|.+....      |......++-++.-..+|..      
T Consensus        22 SF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~------p~~vrr~IGVl~~e~glY~RlT~rEn   95 (245)
T COG4555          22 SFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRD------PSFVRRKIGVLFGERGLYARLTAREN   95 (245)
T ss_pred             eEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccC------hHHHhhhcceecCCcChhhhhhHHHH
Confidence            667999999999999999999999999999999999999999987653      22122233333322222221      


Q ss_pred             -------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccc
Q 036195           85 -------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSK  142 (183)
Q Consensus        85 -------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~  142 (183)
                                   ....+..++.+.+++.+..++++..+|-|+||+      +.-+|..+   ||..+.|..+...|..+
T Consensus        96 l~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~df  175 (245)
T COG4555          96 LKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDF  175 (245)
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHH
Confidence                         112245678889999999999999999999983      35566665   89999999999999999


Q ss_pred             eeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          143 LIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..++.+ .+.|+..||.+.++-+.||+||.|-
T Consensus       176 i~q~k~e-gr~viFSSH~m~EvealCDrvivlh  207 (245)
T COG4555         176 IKQLKNE-GRAVIFSSHIMQEVEALCDRVIVLH  207 (245)
T ss_pred             HHHhhcC-CcEEEEecccHHHHHHhhheEEEEe
Confidence            9999887 8999999999999999999999984

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=7.3e-29  Score=198.94  Aligned_cols=164  Identities=13%  Similarity=0.059  Sum_probs=127.3

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc--cc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK--SI   81 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~--~l   81 (183)
                      +++|++  |++++||++||+||||||||||+++|+|+++|++|+|.++|.++....    .... ...++++++..  .+
T Consensus        18 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~----~~~~-~~~i~~v~q~~~~~~   92 (274)
T PRK13647         18 TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAEN----EKWV-RSKVGLVFQDPDDQV   92 (274)
T ss_pred             CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCC----HHHH-HhhEEEEecChhhhh
Confidence            357875  568999999999999999999999999999999999999998764310    0000 01223333221  00


Q ss_pred             cc------------------cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcc
Q 036195           82 CH------------------EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEA  134 (183)
Q Consensus        82 ~~------------------~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~  134 (183)
                      +.                  ........++++.+++..+.++++.+|||||+|+      ++.+|+.+   ||....|+.
T Consensus        93 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~  172 (274)
T PRK13647         93 FSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPR  172 (274)
T ss_pred             ccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHH
Confidence            00                  0011235677889999999999999999999983      47888887   899999999


Q ss_pred             cccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          135 TKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ++..+..++..+..+ ..+|+++|||++++.+.|||++.++
T Consensus       173 ~~~~l~~~l~~~~~~-g~tili~tH~~~~~~~~~d~i~~l~  212 (274)
T PRK13647        173 GQETLMEILDRLHNQ-GKTVIVATHDVDLAAEWADQVIVLK  212 (274)
T ss_pred             HHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEE
Confidence            999999999888655 8899999999999999999999985

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.94  E-value=1.5e-28  Score=193.07  Aligned_cols=164  Identities=15%  Similarity=0.035  Sum_probs=125.0

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCC-CCcccc
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLP-NLKSIC   82 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp-~l~~l~   82 (183)
                      +++|+++  ++++||+++|+||||||||||+++|+|+++|++|+|.++|.++....     .. ....+++++ +...++
T Consensus        34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~-----~~-~~~~i~~~~~~~~~~~  107 (236)
T cd03267          34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRR-----KK-FLRRIGVVFGQKTQLW  107 (236)
T ss_pred             eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccc-----hh-hcccEEEEcCCccccC
Confidence            3578754  58999999999999999999999999999999999999987643210     00 001122221 111111


Q ss_pred             c-------------------cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcc
Q 036195           83 H-------------------EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEA  134 (183)
Q Consensus        83 ~-------------------~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~  134 (183)
                      .                   ........++++.+++.+..+.++.+||+||+|+      ++.+|+.+   ||....|+.
T Consensus       108 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~  187 (236)
T cd03267         108 WDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVV  187 (236)
T ss_pred             CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHH
Confidence            0                   0001124567888899888899999999999983      47788887   999999999


Q ss_pred             cccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          135 TKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      .+..+..++..+..+...+|+++||+.+++...||++++++
T Consensus       188 ~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~  228 (236)
T cd03267         188 AQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVID  228 (236)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEe
Confidence            99999999998766557899999999999999999999995

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=1.2e-28  Score=194.17  Aligned_cols=165  Identities=15%  Similarity=0.112  Sum_probs=125.9

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      ++++++  |++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++....    .... ...++++++...++.
T Consensus        16 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~----~~~~-~~~i~~~~q~~~~~~   90 (241)
T PRK14250         16 KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTID----VIDL-RRKIGMVFQQPHLFE   90 (241)
T ss_pred             eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcC----hHHh-hhcEEEEecCchhch
Confidence            357774  468999999999999999999999999999999999999998754210    0000 012223232211111


Q ss_pred             --------------cccchHHHHHHHHcCCC-CccCCCCCCCChhhhhe------ecCchhhc---ccccccCccccccc
Q 036195           84 --------------EALAFPCLERIYVHGCP-SLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVF  139 (183)
Q Consensus        84 --------------~~~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~  139 (183)
                                    ........++++.+++. .+.++++.+||+||+|+      +..+|+.+   ||....|+..+..+
T Consensus        91 ~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l  170 (241)
T PRK14250         91 GTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEII  170 (241)
T ss_pred             hhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence                          00112356778889996 57889999999999983      36778776   89999999999999


Q ss_pred             ccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          140 SSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ...+..+..+...+|+++|||++.+.+.||+++.++
T Consensus       171 ~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~  206 (241)
T PRK14250        171 EELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLN  206 (241)
T ss_pred             HHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEe
Confidence            999988766557899999999999999999999997

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=99.94  E-value=7e-29  Score=187.51  Aligned_cols=149  Identities=19%  Similarity=0.160  Sum_probs=121.8

Q ss_pred             ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195            7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE   84 (183)
Q Consensus         7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~   84 (183)
                      ++|++  |++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++....    .... ...++++++       
T Consensus        13 ~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~----~~~~-~~~i~~~~q-------   80 (180)
T cd03214          13 TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLS----PKEL-ARKIAYVPQ-------   80 (180)
T ss_pred             eeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCC----HHHH-HHHHhHHHH-------
Confidence            57764  568999999999999999999999999999999999999998764310    0000 012333222       


Q ss_pred             ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCcccccCCC
Q 036195           85 ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIP  155 (183)
Q Consensus        85 ~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~  155 (183)
                              +++.+++....+.++.+||+||+|+      +..+|+.+   ||....|+..+..+..++..+..+...+++
T Consensus        81 --------~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tii  152 (180)
T cd03214          81 --------ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVV  152 (180)
T ss_pred             --------HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence                    7888899888888999999999983      47788876   899999999999999999887665568999


Q ss_pred             CCCceeeeeecccceEEEEe
Q 036195          156 QPSYTYEATIRPRYELICID  175 (183)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ++||+++++.+.||+++.++
T Consensus       153 i~sh~~~~~~~~~d~~~~l~  172 (180)
T cd03214         153 MVLHDLNLAARYADRVILLK  172 (180)
T ss_pred             EEeCCHHHHHHhCCEEEEEE
Confidence            99999999999999999986

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=1.1e-28  Score=198.92  Aligned_cols=168  Identities=15%  Similarity=0.081  Sum_probs=127.9

Q ss_pred             cccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc--ccc
Q 036195            7 PHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK--SIC   82 (183)
Q Consensus         7 ~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~--~l~   82 (183)
                      ++|+++  +|++||++||+||||||||||+++|+|+++|++|+|.++|.++........... ....++++++..  .++
T Consensus        21 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~-~~~~ig~v~q~~~~~l~   99 (286)
T PRK13646         21 QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP-VRKRIGMVFQFPESQLF   99 (286)
T ss_pred             CceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH-HHhheEEEecChHhccc
Confidence            588855  589999999999999999999999999999999999999987642100000000 011233333321  111


Q ss_pred             c------------------cccchHHHHHHHHcCCC-CccCCCCCCCChhhhhe------ecCchhhc---ccccccCcc
Q 036195           83 H------------------EALAFPCLERIYVHGCP-SLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEA  134 (183)
Q Consensus        83 ~------------------~~~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~  134 (183)
                      .                  ......+.++++.+++. ...+.++.+|||||+|+      ++.+|+.+   ||....|+.
T Consensus       100 ~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~  179 (286)
T PRK13646        100 EDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQ  179 (286)
T ss_pred             hhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHH
Confidence            0                  00112346778889996 68889999999999983      47888887   899999999


Q ss_pred             cccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          135 TKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ++..+..++..+..+...+|+++|||++.+...||+++.++
T Consensus       180 ~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~  220 (286)
T PRK13646        180 SKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMK  220 (286)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEE
Confidence            99999999998876668999999999999999999999996

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=99.94  E-value=2.1e-28  Score=189.02  Aligned_cols=161  Identities=16%  Similarity=0.100  Sum_probs=124.4

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      ++++++  |++++| +++|+||||||||||+++|+|+++|++|+|.++|.++....     ... ...++++++...++.
T Consensus        13 ~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-----~~~-~~~i~~~~q~~~~~~   85 (211)
T cd03264          13 KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-----QKL-RRRIGYLPQEFGVYP   85 (211)
T ss_pred             EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-----HHH-HhheEEecCCCcccc
Confidence            357875  568999 99999999999999999999999999999999998764310     000 112333333221111


Q ss_pred             c-------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195           84 E-------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT  135 (183)
Q Consensus        84 ~-------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~  135 (183)
                      .                   .......++++.+++..+.+.++.+||+||+|+      +..+|+.+   ||....|+..
T Consensus        86 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~  165 (211)
T cd03264          86 NFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEE  165 (211)
T ss_pred             cCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence            0                   001134567888999888899999999999983      47788886   8999999999


Q ss_pred             ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+..++..+..+  .+++++|||++.+.+.+|++++++
T Consensus       166 ~~~l~~~l~~~~~~--~tii~vsH~~~~~~~~~d~i~~l~  203 (211)
T cd03264         166 RIRFRNLLSELGED--RIVILSTHIVEDVESLCNQVAVLN  203 (211)
T ss_pred             HHHHHHHHHHHhCC--CEEEEEcCCHHHHHHhCCEEEEEE
Confidence            99999999887653  789999999999999999999997

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=99.94  E-value=1.8e-28  Score=189.82  Aligned_cols=158  Identities=10%  Similarity=0.036  Sum_probs=123.7

Q ss_pred             cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc-------
Q 036195           11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH-------   83 (183)
Q Consensus        11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~-------   83 (183)
                      ||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....      . ...++++++...++.       
T Consensus        18 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~------~-~~~i~~v~q~~~~~~~~t~~en   90 (213)
T TIGR01277        18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAP------Y-QRPVSMLFQENNLFAHLTVRQN   90 (213)
T ss_pred             EEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCCh------h-ccceEEEeccCccCCCCcHHHH
Confidence            56799999999999999999999999999999999999999987542100      0 011222222111110       


Q ss_pred             ------------cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccc
Q 036195           84 ------------EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSK  142 (183)
Q Consensus        84 ------------~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~  142 (183)
                                  ........++++.+++..+.++++.+||+||+|+      +..+|+.+   ||....|+.++..+..+
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~  170 (213)
T TIGR01277        91 IGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLAL  170 (213)
T ss_pred             HHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHH
Confidence                        0011235668899999988999999999999983      47788887   89999999999999999


Q ss_pred             eeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          143 LIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+..+...+++++||+++.+...||+++.++
T Consensus       171 l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~  203 (213)
T TIGR01277       171 VKQLCSERQRTLLMVTHHLSDARAIASQIAVVS  203 (213)
T ss_pred             HHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEE
Confidence            998876657899999999999999999999985

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=99.94  E-value=1.5e-28  Score=191.03  Aligned_cols=165  Identities=14%  Similarity=0.029  Sum_probs=123.7

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      ++++++  |++.+||++||+||||||||||+++|+|+++|++|+|.++|.++.....    .......++++++...++.
T Consensus        13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~----~~~~~~~i~~~~q~~~~~~   88 (222)
T cd03224          13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPP----HERARAGIGYVPEGRRIFP   88 (222)
T ss_pred             eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCH----HHHHhcCeEEeccccccCC
Confidence            357775  5689999999999999999999999999999999999999976542100    0000112334443322221


Q ss_pred             cc-----------------cchHHHHHHHHc-CCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccc
Q 036195           84 EA-----------------LAFPCLERIYVH-GCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATK  136 (183)
Q Consensus        84 ~~-----------------~~~~~l~vLe~l-~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~  136 (183)
                      ..                 ......++++.+ ++....+.++.+||+||+|+      +..+|+.+   ||....|+..+
T Consensus        89 ~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~  168 (222)
T cd03224          89 ELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIV  168 (222)
T ss_pred             CCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHH
Confidence            10                 011234566666 46777889999999999983      36677776   89999999999


Q ss_pred             cccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          137 HVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ..+..++..+.. ...+++++|||++.+.+.||++++++
T Consensus       169 ~~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~  206 (222)
T cd03224         169 EEIFEAIRELRD-EGVTILLVEQNARFALEIADRAYVLE  206 (222)
T ss_pred             HHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhccEEEEee
Confidence            999999987755 37899999999999999999999986

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=99.94  E-value=3.1e-28  Score=191.78  Aligned_cols=164  Identities=12%  Similarity=-0.023  Sum_probs=124.4

Q ss_pred             ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|+  ||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....    .......++++++...++.
T Consensus        15 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~----~~~~~~~i~~~~q~~~~~~   90 (242)
T TIGR03411        15 FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPE----HQIARAGIGRKFQKPTVFE   90 (242)
T ss_pred             eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCH----HHHHhcCeeEeccccccCC
Confidence            35777  45689999999999999999999999999999999999999986542100    0000011222222111110


Q ss_pred             ---------------------------cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---cc
Q 036195           84 ---------------------------EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQ  127 (183)
Q Consensus        84 ---------------------------~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~  127 (183)
                                                 ........++++.+++....+.++.+||+||+|+      +..+|+.+   ||
T Consensus        91 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEP  170 (242)
T TIGR03411        91 NLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEP  170 (242)
T ss_pred             CCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence                                       0011235677888999988899999999999983      47788887   89


Q ss_pred             ccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          128 LEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       128 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ....|+..+..+..++..+..  ..+++++||+++.+...||+++.++
T Consensus       171 t~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~  216 (242)
T TIGR03411       171 VAGMTDEETEKTAELLKSLAG--KHSVVVVEHDMEFVRSIADKVTVLH  216 (242)
T ss_pred             ccCCCHHHHHHHHHHHHHHhc--CCEEEEEECCHHHHHHhCCEEEEEE
Confidence            999999999999999987754  3799999999999999999999996

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=99.94  E-value=1.2e-28  Score=197.04  Aligned_cols=165  Identities=15%  Similarity=0.059  Sum_probs=125.9

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcc--c
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKS--I   81 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~--l   81 (183)
                      +++|++  |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++....     .......++++++...  +
T Consensus        26 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~-----~~~~~~~i~~v~q~~~~~~  100 (267)
T PRK15112         26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGD-----YSYRSQRIRMIFQDPSTSL  100 (267)
T ss_pred             cceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCc-----hhhHhccEEEEecCchhhc
Confidence            368875  568999999999999999999999999999999999999998764210     0000011222222210  0


Q ss_pred             c--------------------ccccchHHHHHHHHcCC-CCccCCCCCCCChhhhhe------ecCchhhc---cccccc
Q 036195           82 C--------------------HEALAFPCLERIYVHGC-PSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWD  131 (183)
Q Consensus        82 ~--------------------~~~~~~~~l~vLe~l~L-~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~  131 (183)
                      +                    .......+.++++.+++ +...+.++.+||+||+|+      +..+|+.+   ||+...
T Consensus       101 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~L  180 (267)
T PRK15112        101 NPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASL  180 (267)
T ss_pred             CcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccC
Confidence            0                    00011235678899999 467888899999999983      36778876   899999


Q ss_pred             CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      |+..+..+...+..+..+...+|+++||+++.+...||+++.|+
T Consensus       181 D~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~  224 (267)
T PRK15112        181 DMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMH  224 (267)
T ss_pred             CHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEE
Confidence            99999999999998776667899999999999999999999996

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=99.94  E-value=2.1e-28  Score=191.13  Aligned_cols=167  Identities=13%  Similarity=-0.019  Sum_probs=124.8

Q ss_pred             ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195            7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE   84 (183)
Q Consensus         7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~   84 (183)
                      +++++  |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...... .........++++++...++..
T Consensus        24 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~-~~~~~~~~~i~~~~q~~~l~~~  102 (228)
T PRK10584         24 SILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEE-ARAKLRAKHVGFVFQSFMLIPT  102 (228)
T ss_pred             EEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHH-HHHHHHhheEEEEEcccccCCC
Confidence            47875  56899999999999999999999999999999999999999865431000 0000000122333332211110


Q ss_pred             -------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccc
Q 036195           85 -------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATK  136 (183)
Q Consensus        85 -------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~  136 (183)
                                         .......++++.+++....++++.+||+||+|+      +..+|+.+   ||....|+..+
T Consensus       103 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~  182 (228)
T PRK10584        103 LNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTG  182 (228)
T ss_pred             cCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Confidence                               001234667889999988899999999999983      47788887   89999999999


Q ss_pred             cccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          137 HVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ..+..++..+..+...+|+++|||++++ ..||+++.++
T Consensus       183 ~~l~~~l~~~~~~~~~tii~~sH~~~~~-~~~d~i~~l~  220 (228)
T PRK10584        183 DKIADLLFSLNREHGTTLILVTHDLQLA-ARCDRRLRLV  220 (228)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEecCHHHH-HhCCEEEEEE
Confidence            9999999887666678999999999987 5599999985

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=99.94  E-value=1.7e-28  Score=191.85  Aligned_cols=166  Identities=14%  Similarity=0.021  Sum_probs=125.1

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|++  |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....    .......++++++...++.
T Consensus        13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~----~~~~~~~i~~~~q~~~~~~   88 (230)
T TIGR03410        13 SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPP----HERARAGIAYVPQGREIFP   88 (230)
T ss_pred             eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCH----HHHHHhCeEEeccCCcccC
Confidence            367874  5689999999999999999999999999999999999999976543100    0000112344444332222


Q ss_pred             ccc----------------chHHHHHHHHcC-CCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccccc
Q 036195           84 EAL----------------AFPCLERIYVHG-CPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKH  137 (183)
Q Consensus        84 ~~~----------------~~~~l~vLe~l~-L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~  137 (183)
                      ...                .....++++.++ +....+.++.+||+||+|+      +..+|+.+   ||....|+..+.
T Consensus        89 ~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~  168 (230)
T TIGR03410        89 RLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIK  168 (230)
T ss_pred             CCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHH
Confidence            100                011245566665 5677889999999999983      36788887   899999999999


Q ss_pred             ccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          138 VFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      .+..++.....+...+++++||+++.+.+.||+++.++
T Consensus       169 ~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~  206 (230)
T TIGR03410       169 DIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVME  206 (230)
T ss_pred             HHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEE
Confidence            99999988766557899999999999999999999986

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=2.5e-28  Score=191.42  Aligned_cols=168  Identities=14%  Similarity=0.047  Sum_probs=124.5

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|++  |++++||+++|+||||||||||+++|+|+++|++|+|+++|+++...... .........++++++...++.
T Consensus        22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~-~~~~~~~~~i~~v~q~~~~~~  100 (233)
T PRK11629         22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSA-AKAELRNQKLGFIYQFHHLLP  100 (233)
T ss_pred             eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHH-HHHHHHhccEEEEecCcccCC
Confidence            357874  56899999999999999999999999999999999999999876421000 000000012333333221111


Q ss_pred             c-------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195           84 E-------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT  135 (183)
Q Consensus        84 ~-------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~  135 (183)
                      .                   .......++++.+++..+.+.++.+|||||+|+      +..+|+++   ||+...|+..
T Consensus       101 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~  180 (233)
T PRK11629        101 DFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARN  180 (233)
T ss_pred             CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Confidence            0                   011235678899999988899999999999983      37788887   9999999999


Q ss_pred             ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+..++..+..+...+++++|||++++... ++++.++
T Consensus       181 ~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~-~~~~~l~  219 (233)
T PRK11629        181 ADSIFQLLGELNRLQGTAFLVVTHDLQLAKRM-SRQLEMR  219 (233)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhh-CEEEEEE
Confidence            99999999877654578999999999998775 6888774

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=99.94  E-value=2.8e-28  Score=191.80  Aligned_cols=166  Identities=15%  Similarity=0.047  Sum_probs=125.5

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      ++++++  |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....  . .......++++++...++.
T Consensus        14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~--~-~~~~~~~i~~~~q~~~~~~   90 (240)
T PRK09493         14 TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKV--D-ERLIRQEAGMVFQQFYLFP   90 (240)
T ss_pred             eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCh--h-HHHHhhceEEEecccccCC
Confidence            467875  5689999999999999999999999999999999999999987642100  0 0000011222222211110


Q ss_pred             --------------------cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcc
Q 036195           84 --------------------EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEA  134 (183)
Q Consensus        84 --------------------~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~  134 (183)
                                          ......+.++++.+++....++++.+||+||+|+      +..+|+.+   ||+...|+.
T Consensus        91 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~  170 (240)
T PRK09493         91 HLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPE  170 (240)
T ss_pred             CCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence                                0011134678889999888899999999999983      36778876   899999999


Q ss_pred             cccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          135 TKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ++..+..++..+..+ ..+++++|||++.+.+.||++++++
T Consensus       171 ~~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~  210 (240)
T PRK09493        171 LRHEVLKVMQDLAEE-GMTMVIVTHEIGFAEKVASRLIFID  210 (240)
T ss_pred             HHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEE
Confidence            999999999887654 7889999999999999999999996

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=99.94  E-value=2e-28  Score=189.35  Aligned_cols=167  Identities=13%  Similarity=0.028  Sum_probs=126.3

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|++  |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...... .... ....++++++...++.
T Consensus        14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~-~~~~-~~~~i~~v~q~~~~~~   91 (214)
T cd03292          14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGR-AIPY-LRRKIGVVFQDFRLLP   91 (214)
T ss_pred             ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHH-HHHH-HHHheEEEecCchhcc
Confidence            357875  45899999999999999999999999999999999999999866421000 0000 0012333333221111


Q ss_pred             c-------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195           84 E-------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT  135 (183)
Q Consensus        84 ~-------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~  135 (183)
                      .                   .......++++.+++....+.++.+||+||+|+      +..+|+.+   ||+...|+..
T Consensus        92 ~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~  171 (214)
T cd03292          92 DRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDT  171 (214)
T ss_pred             CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHH
Confidence            1                   001234567888899888899999999999983      47788887   8999999999


Q ss_pred             ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+..++..+..+ ..+++++||+.+.+...||+++.++
T Consensus       172 ~~~~~~~l~~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~  210 (214)
T cd03292         172 TWEIMNLLKKINKA-GTTVVVATHAKELVDTTRHRVIALE  210 (214)
T ss_pred             HHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEe
Confidence            99999999887655 7899999999999999999999986

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=2.8e-28  Score=196.80  Aligned_cols=167  Identities=14%  Similarity=0.039  Sum_probs=125.1

Q ss_pred             cccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc--ccc
Q 036195            7 PHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK--SIC   82 (183)
Q Consensus         7 ~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~--~l~   82 (183)
                      ++|+++  +|.+||+++|+||||||||||+++|+|+++|++|+|+++|.++........... ....++++++..  .++
T Consensus        20 ~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~-~~~~ig~v~q~~~~~l~   98 (288)
T PRK13643         20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP-VRKKVGVVFQFPESQLF   98 (288)
T ss_pred             cceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH-HHhhEEEEecCcchhcc
Confidence            478754  599999999999999999999999999999999999999987631000000000 001223333221  111


Q ss_pred             c------------------cccchHHHHHHHHcCCC-CccCCCCCCCChhhhhe------ecCchhhc---ccccccCcc
Q 036195           83 H------------------EALAFPCLERIYVHGCP-SLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEA  134 (183)
Q Consensus        83 ~------------------~~~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~  134 (183)
                      .                  ......+.++++.+++. .+.++++..|||||+|+      ++.+|+.+   ||....|+.
T Consensus        99 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~  178 (288)
T PRK13643         99 EETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPK  178 (288)
T ss_pred             cchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHH
Confidence            0                  00112356678889995 58899999999999983      37788887   899999999


Q ss_pred             cccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          135 TKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ++..+..++..+..+ ..+|+++|||++.+.+.||++++++
T Consensus       179 ~~~~l~~~l~~l~~~-g~til~vtHd~~~~~~~~dri~~l~  218 (288)
T PRK13643        179 ARIEMMQLFESIHQS-GQTVVLVTHLMDDVADYADYVYLLE  218 (288)
T ss_pred             HHHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEEEE
Confidence            999999999877654 7899999999999999999999986

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=2.7e-28  Score=194.72  Aligned_cols=165  Identities=18%  Similarity=0.076  Sum_probs=125.9

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccc--
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSI--   81 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l--   81 (183)
                      +++|++  |++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++.....    ... ...++++++...+  
T Consensus        24 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~----~~~-~~~i~~v~q~~~~~~   98 (265)
T PRK10575         24 RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSS----KAF-ARKVAYLPQQLPAAE   98 (265)
T ss_pred             EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCH----HHH-hhheEEeccCCCCCC
Confidence            357774  5689999999999999999999999999999999999999976532100    000 0011111111000  


Q ss_pred             ---------------------cccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---cccccc
Q 036195           82 ---------------------CHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWD  131 (183)
Q Consensus        82 ---------------------~~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~  131 (183)
                                           ..........++++.+++....++++.+|||||+|+      +..+|+.+   ||+...
T Consensus        99 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~L  178 (265)
T PRK10575         99 GMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSAL  178 (265)
T ss_pred             CccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence                                 000011235678889999888899999999999983      47788887   899999


Q ss_pred             CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      |+.++..+..++..+..+...+|+++||+++.+.+.||+++.++
T Consensus       179 D~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~  222 (265)
T PRK10575        179 DIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALR  222 (265)
T ss_pred             CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence            99999999999998876657899999999999999999999996

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.94  E-value=2.8e-28  Score=194.65  Aligned_cols=164  Identities=15%  Similarity=0.103  Sum_probs=125.6

Q ss_pred             cccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccc--
Q 036195            7 PHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSIC--   82 (183)
Q Consensus         7 ~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~--   82 (183)
                      ++|+  ||++.+||+++|+||||||||||+++|+|+++|++|+|.++|+++.....    ... ...++++++...++  
T Consensus        21 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~----~~~-~~~i~~v~q~~~~~~~   95 (265)
T PRK10253         21 TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYAS----KEV-ARRIGLLAQNATTPGD   95 (265)
T ss_pred             EEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCH----HHH-hhheEEeeccCcCCCC
Confidence            5777  45689999999999999999999999999999999999999986542100    000 00122222211110  


Q ss_pred             ---------------------ccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccC
Q 036195           83 ---------------------HEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDD  132 (183)
Q Consensus        83 ---------------------~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d  132 (183)
                                           .........++++.+++....++++.+||+||+|+      +..+|+.+   ||..+.|
T Consensus        96 ~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD  175 (265)
T PRK10253         96 ITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD  175 (265)
T ss_pred             CcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence                                 00011234678888999888899999999999983      47788887   8999999


Q ss_pred             cccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          133 EATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+..+..++..+..+...+++++|||++.+.+.||+++.++
T Consensus       176 ~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~  218 (265)
T PRK10253        176 ISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALR  218 (265)
T ss_pred             HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence            9999999999988766557899999999999999999999986

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.94  E-value=2.2e-28  Score=183.25  Aligned_cols=170  Identities=14%  Similarity=0.046  Sum_probs=139.0

Q ss_pred             ccccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccc----------------cccchhe
Q 036195            5 YRPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKI----------------SVCSFIL   66 (183)
Q Consensus         5 ~~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~----------------~~~~~~~   66 (183)
                      .++|+++  +++++|.+++|||||||||||||.++++|+++++|+|+++|.++....                -...+++
T Consensus        13 ~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV   92 (252)
T COG4604          13 TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLTV   92 (252)
T ss_pred             CEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhchhhheeEH
Confidence            4577874  568999999999999999999999999999999999999999876421                1134455


Q ss_pred             eehhhhccCCCCccccccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccccc
Q 036195           67 IRRAYFFKLPNLKSICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKH  137 (183)
Q Consensus        67 l~~~~lg~lp~l~~l~~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~  137 (183)
                      .+.+.+|++|....-........+.++++.+++..+.++..++|||||+|+      ++.+.++.   |||---|...-.
T Consensus        93 ~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv  172 (252)
T COG4604          93 RDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSV  172 (252)
T ss_pred             HHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHHH
Confidence            566677888766544333333357889999999999999999999999992      36677775   889888887777


Q ss_pred             ccccceeecCcccccCCCCCCceeeeeecccceEEEE
Q 036195          138 VFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICI  174 (183)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (183)
                      ..-+.+..+..+...+|.++-||.+++-..+|+++.+
T Consensus       173 ~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAl  209 (252)
T COG4604         173 QIMKILRRLADELGKTIVVVLHDINFASCYSDHIVAL  209 (252)
T ss_pred             HHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeee
Confidence            7778888888899999999999999999999999876

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=2e-28  Score=196.60  Aligned_cols=164  Identities=16%  Similarity=0.089  Sum_probs=126.7

Q ss_pred             ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc--ccc
Q 036195            7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK--SIC   82 (183)
Q Consensus         7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~--~l~   82 (183)
                      ++|++  |++++||+++|+||||||||||+++|+|+++|++|+|.++|+++....    .... ...++++++..  .++
T Consensus        18 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~----~~~~-~~~i~~v~q~~~~~~~   92 (277)
T PRK13652         18 EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKEN----IREV-RKFVGLVFQNPDDQIF   92 (277)
T ss_pred             ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCC----HHHH-HhheEEEecCcccccc
Confidence            47875  568999999999999999999999999999999999999998764210    0000 01122222211  000


Q ss_pred             -----c-------------cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195           83 -----H-------------EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT  135 (183)
Q Consensus        83 -----~-------------~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~  135 (183)
                           +             ........++++.+++....++++.+||+||+|+      +..+|+.+   ||....|+.+
T Consensus        93 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~  172 (277)
T PRK13652         93 SPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQG  172 (277)
T ss_pred             cccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence                 0             0001235677899999999999999999999983      47888887   8999999999


Q ss_pred             ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+..++..+..+...+|+++||+++.+.+.||+++.|+
T Consensus       173 ~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~  212 (277)
T PRK13652        173 VKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMD  212 (277)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEE
Confidence            9999999988776657899999999999999999999985

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=2.6e-28  Score=196.16  Aligned_cols=163  Identities=12%  Similarity=0.067  Sum_probs=126.3

Q ss_pred             ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc--ccc
Q 036195            7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK--SIC   82 (183)
Q Consensus         7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~--~l~   82 (183)
                      ++|++  |+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.....    ... ...++++++..  .++
T Consensus        21 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~----~~~-~~~i~~v~q~~~~~~~   95 (279)
T PRK13650         21 YTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENV----WDI-RHKIGMVFQNPDNQFV   95 (279)
T ss_pred             eeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcH----HHH-HhhceEEEcChHHhcc
Confidence            47875  4589999999999999999999999999999999999999987643100    000 01122222211  000


Q ss_pred             ------------------ccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195           83 ------------------HEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT  135 (183)
Q Consensus        83 ------------------~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~  135 (183)
                                        .......+.++++.+++..+.++++.+||+||+|+      ++.+|+.+   ||....|+.+
T Consensus        96 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~  175 (279)
T PRK13650         96 GATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEG  175 (279)
T ss_pred             cccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence                              00011235778999999999999999999999983      47788887   9999999999


Q ss_pred             ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+..++..+..+...+|+++|||++.+ ..|||++.++
T Consensus       176 ~~~l~~~l~~l~~~~g~tilivtH~~~~~-~~~dri~~l~  214 (279)
T PRK13650        176 RLELIKTIKGIRDDYQMTVISITHDLDEV-ALSDRVLVMK  214 (279)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEecCHHHH-HhCCEEEEEE
Confidence            99999999988776689999999999998 5899999996

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=99.94  E-value=3.5e-28  Score=189.63  Aligned_cols=167  Identities=16%  Similarity=0.032  Sum_probs=124.2

Q ss_pred             ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc--ccc
Q 036195            7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK--SIC   82 (183)
Q Consensus         7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~--~l~   82 (183)
                      ++|++  |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...... . .......++++++..  .++
T Consensus        19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~-~-~~~~~~~i~~~~q~~~~~~~   96 (228)
T cd03257          19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRR-L-RKIRRKEIQMVFQDPMSSLN   96 (228)
T ss_pred             eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchh-h-HHHhhccEEEEecCchhhcC
Confidence            67875  56899999999999999999999999999999999999999876431000 0 000001222222221  000


Q ss_pred             ------c----------ccc---chH--HHHHHHHcCCC-CccCCCCCCCChhhhhe------ecCchhhc---cccccc
Q 036195           83 ------H----------EAL---AFP--CLERIYVHGCP-SLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWD  131 (183)
Q Consensus        83 ------~----------~~~---~~~--~l~vLe~l~L~-~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~  131 (183)
                            .          ...   ...  ..++++.+++. .+.+.++.+||+||+|+      +..+|+.+   ||+...
T Consensus        97 ~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~L  176 (228)
T cd03257          97 PRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSAL  176 (228)
T ss_pred             CcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCC
Confidence                  0          000   001  13567888885 57889999999999983      47788887   899999


Q ss_pred             CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      |+..+..+...+..+..+...+|+++|||++.+.+.||+++.|+
T Consensus       177 D~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~  220 (228)
T cd03257         177 DVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMY  220 (228)
T ss_pred             CHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEe
Confidence            99999999999988766557899999999999999999999986

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=99.94  E-value=1.9e-28  Score=191.23  Aligned_cols=167  Identities=17%  Similarity=0.073  Sum_probs=124.8

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccc---ccc-chheeehhhhccCCCCc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKI---SVC-SFILIRRAYFFKLPNLK   79 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~---~~~-~~~~l~~~~lg~lp~l~   79 (183)
                      +++|++  |++++||+++|+||||||||||+++|+|+++|++|+|.++|+++....   .+. ..+..+.+.+...  ..
T Consensus        35 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~tv~enl~~~~~--~~  112 (224)
T cd03220          35 FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPELTGRENIYLNGR--LL  112 (224)
T ss_pred             eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCCCcHHHHHHHHHH--Hc
Confidence            567875  569999999999999999999999999999999999999987643110   000 0111111111100  00


Q ss_pred             cccccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCccc
Q 036195           80 SICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQT  150 (183)
Q Consensus        80 ~l~~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~  150 (183)
                      ............++++.+++....+.++.+||+||+|+      +..+|+.+   ||+...|+.++..+...+.....+ 
T Consensus       113 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~-  191 (224)
T cd03220         113 GLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQ-  191 (224)
T ss_pred             CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-
Confidence            00001111234667888899998999999999999983      37788887   899999999999999999877655 


Q ss_pred             ccCCCCCCceeeeeecccceEEEEe
Q 036195          151 VISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ..+|+++||+++.+...||++++++
T Consensus       192 ~~tiii~sH~~~~~~~~~d~i~~l~  216 (224)
T cd03220         192 GKTVILVSHDPSSIKRLCDRALVLE  216 (224)
T ss_pred             CCEEEEEeCCHHHHHHhCCEEEEEE
Confidence            7789999999999999999999996

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=99.94  E-value=3.4e-28  Score=189.85  Aligned_cols=165  Identities=15%  Similarity=0.007  Sum_probs=123.3

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCC-----CCCCcEEEEEecCccccccccchheeehhhhccCCCC
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMF-----SDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNL   78 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~-----~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l   78 (183)
                      +++|++  |++++||+++|+||||||||||+++|+|++     +|++|+|.++|+++.....  .... ....++++++.
T Consensus        13 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~--~~~~-~~~~i~~~~q~   89 (227)
T cd03260          13 KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDV--DVLE-LRRRVGMVFQK   89 (227)
T ss_pred             ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcch--HHHH-HHhhEEEEecC
Confidence            357875  568999999999999999999999999999     9999999999987542100  0000 00112222222


Q ss_pred             ccccc--------------c--c---cchHHHHHHHHcCCCCccCCC--CCCCChhhhhe------ecCchhhc---ccc
Q 036195           79 KSICH--------------E--A---LAFPCLERIYVHGCPSLRKLP--FSLESGKRNGV------LIGEEEWW---NQL  128 (183)
Q Consensus        79 ~~l~~--------------~--~---~~~~~l~vLe~l~L~~L~~~~--~~~LSgGqk~~------i~~~~~w~---~~l  128 (183)
                      ..++.              .  .   ......++++.+++....+.+  +.+|||||+|+      +..+|+.+   ||.
T Consensus        90 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt  169 (227)
T cd03260          90 PNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPT  169 (227)
T ss_pred             chhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence            11110              0  0   112346678889998776666  59999999983      47788887   899


Q ss_pred             cccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          129 EWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       129 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ...|+..+..+..++..+..+  .+++++|||++.+.+.||+++.|+
T Consensus       170 ~~LD~~~~~~l~~~l~~~~~~--~tii~~sH~~~~~~~~~d~i~~l~  214 (227)
T cd03260         170 SALDPISTAKIEELIAELKKE--YTIVIVTHNMQQAARVADRTAFLL  214 (227)
T ss_pred             ccCCHHHHHHHHHHHHHHhhC--cEEEEEeccHHHHHHhCCEEEEEe
Confidence            999999999999999988665  889999999999999999999986

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=99.94  E-value=3.8e-28  Score=192.52  Aligned_cols=166  Identities=14%  Similarity=0.081  Sum_probs=122.9

Q ss_pred             ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecC-cccc-ccccchheeehhhhccCCCCccc
Q 036195            6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVS-LQKK-ISVCSFILIRRAYFFKLPNLKSI   81 (183)
Q Consensus         6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~-~~~~-~~~~~~~~l~~~~lg~lp~l~~l   81 (183)
                      +++|+  +|++++||+++|+||||||||||+++|+|+++|++|+|.+++.. +.-. .....++.+. ..+..   ....
T Consensus        17 ~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~-~~~~~---~~~~   92 (251)
T PRK09544         17 RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLP-LTVNR---FLRL   92 (251)
T ss_pred             ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccC-hhHHH---HHhc
Confidence            35777  45689999999999999999999999999999999999997632 1000 0000000000 00000   0000


Q ss_pred             cccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCccccc
Q 036195           82 CHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVI  152 (183)
Q Consensus        82 ~~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~  152 (183)
                      ..........++++.+++..+.+.++.+||+||+|+      +..+|+++   ||....|+..+..+..++..+..+...
T Consensus        93 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~  172 (251)
T PRK09544         93 RPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDC  172 (251)
T ss_pred             cccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCC
Confidence            011112345778899999999999999999999983      47788887   899999999999999998877665578


Q ss_pred             CCCCCCceeeeeecccceEEEEe
Q 036195          153 SIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +++++|||++.+.+.||+++.++
T Consensus       173 tiiivsH~~~~i~~~~d~i~~l~  195 (251)
T PRK09544        173 AVLMVSHDLHLVMAKTDEVLCLN  195 (251)
T ss_pred             EEEEEecCHHHHHHhCCEEEEEC
Confidence            99999999999999999999985

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.94  E-value=4.3e-28  Score=209.07  Aligned_cols=165  Identities=10%  Similarity=-0.033  Sum_probs=125.9

Q ss_pred             ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccc-
Q 036195            6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSIC-   82 (183)
Q Consensus         6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~-   82 (183)
                      +++|+  ||++.+||++||+||||||||||+|+|+|+++|++|+|.++|.++.....    .......++++++...++ 
T Consensus        17 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~----~~~~~~~i~~v~q~~~~~~   92 (501)
T PRK10762         17 VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGP----KSSQEAGIGIIHQELNLIP   92 (501)
T ss_pred             eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH----HHHHhCCEEEEEcchhccC
Confidence            35787  55689999999999999999999999999999999999999976532100    000000112222111000 


Q ss_pred             ------------------c----cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---cccccc
Q 036195           83 ------------------H----EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWD  131 (183)
Q Consensus        83 ------------------~----~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~  131 (183)
                                        .    ......+.++++.+++....++++.+|||||+|+      +..+|+.+   ||+..-
T Consensus        93 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~L  172 (501)
T PRK10762         93 QLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDAL  172 (501)
T ss_pred             CCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCC
Confidence                              0    0001235678999999998999999999999983      47788887   999999


Q ss_pred             CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      |+..+..+..++..+..+ ..+++++|||++.+...||++++|+
T Consensus       173 D~~~~~~l~~~l~~l~~~-~~tvii~sHd~~~~~~~~d~i~~l~  215 (501)
T PRK10762        173 TDTETESLFRVIRELKSQ-GRGIVYISHRLKEIFEICDDVTVFR  215 (501)
T ss_pred             CHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEe
Confidence            999999999999888654 7889999999999999999999996

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=3.8e-28  Score=197.42  Aligned_cols=167  Identities=14%  Similarity=0.045  Sum_probs=126.6

Q ss_pred             ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccc------------cc--------cch
Q 036195            7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKI------------SV--------CSF   64 (183)
Q Consensus         7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~------------~~--------~~~   64 (183)
                      ++|++  |+|++||+++|+||||||||||+++|+|+++|++|+|+++|.+.....            ..        ...
T Consensus        21 ~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (305)
T PRK13651         21 KALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKI  100 (305)
T ss_pred             cceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchH
Confidence            48875  568999999999999999999999999999999999999876542100            00        000


Q ss_pred             heeehhhhccCCCCc--cccc-----c-------------ccchHHHHHHHHcCCC-CccCCCCCCCChhhhhe------
Q 036195           65 ILIRRAYFFKLPNLK--SICH-----E-------------ALAFPCLERIYVHGCP-SLRKLPFSLESGKRNGV------  117 (183)
Q Consensus        65 ~~l~~~~lg~lp~l~--~l~~-----~-------------~~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~------  117 (183)
                      .. ....++++++..  .++.     +             .....+.++++.+++. .+.++++.+|||||+|+      
T Consensus       101 ~~-~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~a  179 (305)
T PRK13651        101 KE-IRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGI  179 (305)
T ss_pred             HH-HHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHH
Confidence            00 012344444421  1111     0             0112357789999996 78999999999999983      


Q ss_pred             ecCchhhc---ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          118 LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       118 i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ++.+|+.+   ||....|+..+..+..++..+..+ ..+|+|+|||++.+.+.|||++.++
T Consensus       180 L~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tiiivtHd~~~~~~~adrv~vl~  239 (305)
T PRK13651        180 LAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQ-GKTIILVTHDLDNVLEWTKRTIFFK  239 (305)
T ss_pred             HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeeCHHHHHHhCCEEEEEE
Confidence            47788887   899999999999999999888744 8899999999999999999999985

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=3.1e-28  Score=199.64  Aligned_cols=168  Identities=14%  Similarity=0.016  Sum_probs=128.7

Q ss_pred             ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc--cc
Q 036195            6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK--SI   81 (183)
Q Consensus         6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~--~l   81 (183)
                      .++++  ||+|.+||++||+|+||||||||+++|+|+++|++|+|.++|.++...... ..... ...+++++|..  .+
T Consensus        28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~-~~~~~-r~~i~~v~Q~~~~~l  105 (327)
T PRK11308         28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPE-AQKLL-RQKIQIVFQNPYGSL  105 (327)
T ss_pred             eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHH-HHHHH-hCCEEEEEcCchhhc
Confidence            35777  456899999999999999999999999999999999999999876432000 00000 01233333321  01


Q ss_pred             cc--------------------cccchHHHHHHHHcCCC-CccCCCCCCCChhhhhe------ecCchhhc---cccccc
Q 036195           82 CH--------------------EALAFPCLERIYVHGCP-SLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWD  131 (183)
Q Consensus        82 ~~--------------------~~~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~  131 (183)
                      ..                    ......+.++++.+++. ...++++.+|||||+|+      ++.+|+.+   ||....
T Consensus       106 ~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~L  185 (327)
T PRK11308        106 NPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSAL  185 (327)
T ss_pred             CCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccC
Confidence            00                    00112357789999996 47788999999999983      47889887   899999


Q ss_pred             CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      |...+..+..++..+..+...+++++|||++.+.+.||+|+.++
T Consensus       186 D~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~  229 (327)
T PRK11308        186 DVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMY  229 (327)
T ss_pred             CHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence            99999999999998877778999999999999999999999986

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=99.94  E-value=5e-28  Score=193.15  Aligned_cols=168  Identities=14%  Similarity=-0.019  Sum_probs=126.8

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc--cc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK--SI   81 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~--~l   81 (183)
                      +++|++  |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...... .... ....++++++..  .+
T Consensus        24 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~-~~~~-~~~~i~~v~q~~~~~~  101 (265)
T TIGR02769        24 APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK-QRRA-FRRDVQLVFQDSPSAV  101 (265)
T ss_pred             eEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH-HHHH-HhhceEEEecChhhhc
Confidence            468875  56899999999999999999999999999999999999999866421000 0000 001123333321  01


Q ss_pred             cc--------------------cccchHHHHHHHHcCCC-CccCCCCCCCChhhhhe------ecCchhhc---cccccc
Q 036195           82 CH--------------------EALAFPCLERIYVHGCP-SLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWD  131 (183)
Q Consensus        82 ~~--------------------~~~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~  131 (183)
                      +.                    ........++++.+++. .+.+.++.+||+||+|+      +..+|+.+   ||+...
T Consensus       102 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~L  181 (265)
T TIGR02769       102 NPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNL  181 (265)
T ss_pred             CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence            10                    00112356788899996 67889999999999983      37788887   899999


Q ss_pred             CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      |+..+..+..++..+..+...+|+++|||++.+...||++++|+
T Consensus       182 D~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~  225 (265)
T TIGR02769       182 DMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMD  225 (265)
T ss_pred             CHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEe
Confidence            99999999999988776657899999999999999999999996

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=3.9e-28  Score=195.16  Aligned_cols=167  Identities=12%  Similarity=0.019  Sum_probs=124.3

Q ss_pred             ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc--ccc
Q 036195            7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK--SIC   82 (183)
Q Consensus         7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~--~l~   82 (183)
                      ++|++  |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++........... ....++++++..  .++
T Consensus        21 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~-~~~~i~~~~q~~~~~~~   99 (280)
T PRK13649         21 RALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ-IRKKVGLVFQFPESQLF   99 (280)
T ss_pred             ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH-HHhheEEEeeChhhhhc
Confidence            57875  5689999999999999999999999999999999999999986542100000000 001223333321  111


Q ss_pred             c-----c---------c----cchHHHHHHHHcCCC-CccCCCCCCCChhhhhe------ecCchhhc---ccccccCcc
Q 036195           83 H-----E---------A----LAFPCLERIYVHGCP-SLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEA  134 (183)
Q Consensus        83 ~-----~---------~----~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~  134 (183)
                      .     +         .    ......++++.+++. .+.++++.+||+||+|+      ++.+|+++   ||....|+.
T Consensus       100 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~  179 (280)
T PRK13649        100 EETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPK  179 (280)
T ss_pred             cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence            0     0         0    011235667888997 57789999999999983      47788887   899999999


Q ss_pred             cccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          135 TKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      .+..+..++..+..+ ..+|+++||+++.+.+.||++++|+
T Consensus       180 ~~~~l~~~l~~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~  219 (280)
T PRK13649        180 GRKELMTLFKKLHQS-GMTIVLVTHLMDDVANYADFVYVLE  219 (280)
T ss_pred             HHHHHHHHHHHHHHC-CCEEEEEeccHHHHHHhCCEEEEEE
Confidence            999999999877654 7899999999999999999999996

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=99.94  E-value=4.7e-28  Score=187.50  Aligned_cols=163  Identities=12%  Similarity=0.081  Sum_probs=123.8

Q ss_pred             cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc------
Q 036195           11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE------   84 (183)
Q Consensus        11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~------   84 (183)
                      +|++++ |+++|+||||||||||+++|+|+++|++|+|.++|.++........... ....++++++...++..      
T Consensus        18 sl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~-~~~~i~~~~q~~~~~~~~t~~~~   95 (214)
T cd03297          18 DFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPP-QQRKIGLVFQQYALFPHLNVREN   95 (214)
T ss_pred             eEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhh-HhhcEEEEecCCccCCCCCHHHH
Confidence            567999 9999999999999999999999999999999999976532100000000 01123333333222211      


Q ss_pred             -----------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccccccccccee
Q 036195           85 -----------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLI  144 (183)
Q Consensus        85 -----------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~  144 (183)
                                 .......++++.+++....+.++.+||+||+|+      ++.+|+.+   ||....|+.++..+..++.
T Consensus        96 l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~  175 (214)
T cd03297          96 LAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELK  175 (214)
T ss_pred             HHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence                       001134567888999888899999999999983      47788887   8999999999999999998


Q ss_pred             ecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          145 ITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      .+..+...+++++|||++++...||++++++
T Consensus       176 ~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~  206 (214)
T cd03297         176 QIKKNLNIPVIFVTHDLSEAEYLADRIVVME  206 (214)
T ss_pred             HHHHHcCcEEEEEecCHHHHHHhcCEEEEEE
Confidence            8866657889999999999999999999986

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.94  E-value=6.1e-28  Score=192.01  Aligned_cols=165  Identities=16%  Similarity=0.119  Sum_probs=124.7

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccc-
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSIC-   82 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~-   82 (183)
                      +++|++  |++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.....    ... ...++++++...++ 
T Consensus        15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~----~~~-~~~i~~~~q~~~~~~   89 (258)
T PRK13548         15 RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSP----AEL-ARRRAVLPQHSSLSF   89 (258)
T ss_pred             eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCH----HHh-hhheEEEccCCcCCC
Confidence            457875  5689999999999999999999999999999999999999976532100    000 01122222211110 


Q ss_pred             -----c-------------cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ec------Cchhhc---cccc
Q 036195           83 -----H-------------EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LI------GEEEWW---NQLE  129 (183)
Q Consensus        83 -----~-------------~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~------~~~~w~---~~l~  129 (183)
                           .             ........++++.+++....+.++.+|||||+|+      ++      .+|+++   ||+.
T Consensus        90 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~  169 (258)
T PRK13548         90 PFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTS  169 (258)
T ss_pred             CCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcc
Confidence                 0             0001234667888999988899999999999983      24      378887   8999


Q ss_pred             ccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          130 WDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       130 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ..|+..+..+..++..+..+...+|+++|||++.+...||+++.++
T Consensus       170 ~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~  215 (258)
T PRK13548        170 ALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLH  215 (258)
T ss_pred             cCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEE
Confidence            9999999999999988763447899999999999999999999986

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=6e-28  Score=190.06  Aligned_cols=165  Identities=15%  Similarity=0.042  Sum_probs=124.9

Q ss_pred             ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|+  ||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....    .......++++++...++.
T Consensus        16 ~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~----~~~~~~~i~~~~q~~~~~~   91 (241)
T PRK10895         16 RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPL----HARARRGIGYLPQEASIFR   91 (241)
T ss_pred             EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH----HHHHHhCeEEeccCCcccc
Confidence            35776  55699999999999999999999999999999999999999976542100    0000011222222211111


Q ss_pred             --------------------cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcc
Q 036195           84 --------------------EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEA  134 (183)
Q Consensus        84 --------------------~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~  134 (183)
                                          ........++++.+++....+.++.+||+||+|+      +..+|+.+   ||....|+.
T Consensus        92 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~  171 (241)
T PRK10895         92 RLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPI  171 (241)
T ss_pred             cCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence                                0001235667888899888899999999999983      36788887   899999999


Q ss_pred             cccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          135 TKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      .+..+..++..+..+ ...++++||+++.+.+.||++++|+
T Consensus       172 ~~~~l~~~l~~~~~~-g~tiii~sH~~~~~~~~~d~v~~l~  211 (241)
T PRK10895        172 SVIDIKRIIEHLRDS-GLGVLITDHNVRETLAVCERAYIVS  211 (241)
T ss_pred             HHHHHHHHHHHHHhc-CCEEEEEEcCHHHHHHhcCEEEEEe
Confidence            999999888877654 7899999999999999999999996

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=5.2e-28  Score=194.06  Aligned_cols=165  Identities=16%  Similarity=0.099  Sum_probs=126.4

Q ss_pred             ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc--ccc
Q 036195            7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK--SIC   82 (183)
Q Consensus         7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~--~l~   82 (183)
                      +++++  |++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++.....  .... ....++++++..  .++
T Consensus        16 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~--~~~~-~~~~i~~v~q~~~~~~~   92 (275)
T PRK13639         16 EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKK--SLLE-VRKTVGIVFQNPDDQLF   92 (275)
T ss_pred             eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccc--hHHH-HHhheEEEeeChhhhhc
Confidence            47774  5699999999999999999999999999999999999999987631100  0000 001223332221  000


Q ss_pred             c------------------cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195           83 H------------------EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT  135 (183)
Q Consensus        83 ~------------------~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~  135 (183)
                      .                  ........++++.+++..+.++++.+||+||+|+      ++.+|+.+   ||....|+.+
T Consensus        93 ~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~  172 (275)
T PRK13639         93 APTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMG  172 (275)
T ss_pred             cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHH
Confidence            0                  0011235678899999999999999999999983      47788876   8999999999


Q ss_pred             ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+..++..+..+ ..+|+++|||++.+.+.||++++++
T Consensus       173 ~~~l~~~l~~l~~~-~~til~vtH~~~~~~~~~d~i~~l~  211 (275)
T PRK13639        173 ASQIMKLLYDLNKE-GITIIISTHDVDLVPVYADKVYVMS  211 (275)
T ss_pred             HHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEEEE
Confidence            99999999988655 8899999999999999999999985

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=99.94  E-value=6.2e-28  Score=191.20  Aligned_cols=170  Identities=11%  Similarity=-0.047  Sum_probs=127.2

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccc---c---c-cch-heeehhhhccC
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKI---S---V-CSF-ILIRRAYFFKL   75 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~---~---~-~~~-~~l~~~~lg~l   75 (183)
                      ++++++  |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++....   .   . ... .......++++
T Consensus        13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v   92 (252)
T TIGR03005        13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMV   92 (252)
T ss_pred             eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEEE
Confidence            457764  568999999999999999999999999999999999999998663210   0   0 000 00000123333


Q ss_pred             CCCcccccc--------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---c
Q 036195           76 PNLKSICHE--------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---N  126 (183)
Q Consensus        76 p~l~~l~~~--------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~  126 (183)
                      ++...++..                    .......++++.+++..+.+.++.+||+||+|+      +..+|+.+   |
T Consensus        93 ~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE  172 (252)
T TIGR03005        93 FQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDE  172 (252)
T ss_pred             ecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence            332211110                    011234677888999888899999999999883      36788887   8


Q ss_pred             cccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          127 QLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       127 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      |....|+..+..+..++..+..+...+++++|||++.+.+.||+++.|+
T Consensus       173 P~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~  221 (252)
T TIGR03005       173 VTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFD  221 (252)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEE
Confidence            9999999999999999988776667899999999999999999999986

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=5.9e-28  Score=194.48  Aligned_cols=167  Identities=13%  Similarity=0.067  Sum_probs=127.8

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc--cc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK--SI   81 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~--~l   81 (183)
                      ++++++  |++++||++||+||||||||||+++|+|+++|++|+|.++|.++.....  . .......++++++..  .+
T Consensus        19 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~--~-~~~~~~~ig~v~q~~~~~~   95 (283)
T PRK13636         19 THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRK--G-LMKLRESVGMVFQDPDNQL   95 (283)
T ss_pred             CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcc--h-HHHHHhhEEEEecCcchhh
Confidence            357875  5689999999999999999999999999999999999999987631000  0 000001223333221  00


Q ss_pred             cc------------------cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcc
Q 036195           82 CH------------------EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEA  134 (183)
Q Consensus        82 ~~------------------~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~  134 (183)
                      +.                  ........++++.+++..+.++++.+||+||+|+      ++.+|+.+   ||....|+.
T Consensus        96 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~  175 (283)
T PRK13636         96 FSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPM  175 (283)
T ss_pred             ccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHH
Confidence            00                  0001235677899999999999999999999983      47788876   899999999


Q ss_pred             cccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          135 TKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ++..+..++..+..+..++|+++|||++++.+.||++++++
T Consensus       176 ~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~  216 (283)
T PRK13636        176 GVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMK  216 (283)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEE
Confidence            99999999988776668899999999999999999999996

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=99.94  E-value=7.5e-28  Score=185.16  Aligned_cols=166  Identities=14%  Similarity=0.003  Sum_probs=122.6

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      ++++++  |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...... .........++++++...++.
T Consensus        11 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~-~~~~~~~~~i~~~~q~~~~~~   89 (206)
T TIGR03608        11 KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSK-KASKFRREKLGYLFQNFALIE   89 (206)
T ss_pred             EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchh-hHHHHHHhCeeEEecchhhcc
Confidence            467875  56899999999999999999999999999999999999999874310000 000000011222222221111


Q ss_pred             c-------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195           84 E-------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT  135 (183)
Q Consensus        84 ~-------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~  135 (183)
                      .                   .......++++.+++....++++.+||+||+|+      +..+|+.+   ||....|+.+
T Consensus        90 ~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~  169 (206)
T TIGR03608        90 NETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKN  169 (206)
T ss_pred             CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHH
Confidence            0                   011235678899999988999999999999983      47788887   9999999999


Q ss_pred             ccccccceeecCcccccCCCCCCceeeeeecccceEEEE
Q 036195          136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICI  174 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (183)
                      +..+...+..+..+ ..+++++||+++.+ ..||+++.+
T Consensus       170 ~~~l~~~l~~~~~~-~~tii~~sh~~~~~-~~~d~i~~l  206 (206)
T TIGR03608       170 RDEVLDLLLELNDE-GKTIIIVTHDPEVA-KQADRVIEL  206 (206)
T ss_pred             HHHHHHHHHHHHhc-CCEEEEEeCCHHHH-hhcCEEEeC
Confidence            99999999877655 78999999999864 689999864

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=99.94  E-value=3.8e-28  Score=199.37  Aligned_cols=168  Identities=13%  Similarity=0.017  Sum_probs=128.3

Q ss_pred             ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc--cc
Q 036195            6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK--SI   81 (183)
Q Consensus         6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~--~l   81 (183)
                      .++++  ||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...... ...... ..+++++|..  .+
T Consensus        34 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~-~~~~~r-~~i~~v~Q~~~~~l  111 (331)
T PRK15079         34 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDD-EWRAVR-SDIQMIFQDPLASL  111 (331)
T ss_pred             eEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHH-HHHHHh-CceEEEecCchhhc
Confidence            45777  456899999999999999999999999999999999999999876432100 000000 1223333321  11


Q ss_pred             cc---------------------cccchHHHHHHHHcCCC-CccCCCCCCCChhhhhe------ecCchhhc---ccccc
Q 036195           82 CH---------------------EALAFPCLERIYVHGCP-SLRKLPFSLESGKRNGV------LIGEEEWW---NQLEW  130 (183)
Q Consensus        82 ~~---------------------~~~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~  130 (183)
                      +.                     ......+.++++.+++. ...++++.+|||||+|+      ++.+|+.+   ||...
T Consensus       112 ~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~  191 (331)
T PRK15079        112 NPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSA  191 (331)
T ss_pred             CCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence            10                     00112345778899994 57889999999999983      48899987   89999


Q ss_pred             cCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          131 DDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       131 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      .|..++..+..++..+..+...+++++|||++.+.+.||+++.++
T Consensus       192 LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~  236 (331)
T PRK15079        192 LDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMY  236 (331)
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence            999999999999998877778999999999999999999999986

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=1.2e-27  Score=191.46  Aligned_cols=163  Identities=11%  Similarity=0.004  Sum_probs=124.2

Q ss_pred             ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcc--cc
Q 036195            7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKS--IC   82 (183)
Q Consensus         7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~--l~   82 (183)
                      ++|++  |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....    ... ...++++++...  ++
T Consensus        23 ~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~----~~~-~~~i~~v~q~~~~~~~   97 (269)
T PRK13648         23 FTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNF----EKL-RKHIGIVFQNPDNQFV   97 (269)
T ss_pred             cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCH----HHH-HhheeEEEeChHHhcc
Confidence            47775  5589999999999999999999999999999999999999987642100    000 011222222210  00


Q ss_pred             ------------------ccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195           83 ------------------HEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT  135 (183)
Q Consensus        83 ------------------~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~  135 (183)
                                        .........++++.+++..+.+.++.+||+||+|+      ++.+|+++   ||+...|+..
T Consensus        98 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~  177 (269)
T PRK13648         98 GSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDA  177 (269)
T ss_pred             cccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence                              00001234577889999888899999999999983      47788887   9999999999


Q ss_pred             ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+..++..+..+...+|+++||+++.+.. ||+++.++
T Consensus       178 ~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~~l~  216 (269)
T PRK13648        178 RQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMN  216 (269)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEecCchHHhc-CCEEEEEE
Confidence            9999999987765557899999999999875 99999986

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=99.94  E-value=9.6e-28  Score=186.88  Aligned_cols=160  Identities=14%  Similarity=0.036  Sum_probs=125.4

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|++  |++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++....         ...++++++...++.
T Consensus        13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~---------~~~~~~~~q~~~~~~   83 (223)
T TIGR03740        13 QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD---------LHKIGSLIESPPLYE   83 (223)
T ss_pred             EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc---------cccEEEEcCCCCccc
Confidence            467775  458999999999999999999999999999999999999987653210         012222222211111


Q ss_pred             c---------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccccccc
Q 036195           84 E---------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVF  139 (183)
Q Consensus        84 ~---------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~  139 (183)
                      .               .......++++.+++....+.++.+||+||+|+      +..+|+.+   ||+...|+.++..+
T Consensus        84 ~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l  163 (223)
T TIGR03740        84 NLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQEL  163 (223)
T ss_pred             cCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHH
Confidence            0               011245678889999988999999999999983      37788887   89999999999999


Q ss_pred             ccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          140 SSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ..++..+..+ ..+|+++|||.+++...||+++.++
T Consensus       164 ~~~L~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~  198 (223)
T TIGR03740       164 RELIRSFPEQ-GITVILSSHILSEVQQLADHIGIIS  198 (223)
T ss_pred             HHHHHHHHHC-CCEEEEEcCCHHHHHHhcCEEEEEe
Confidence            9999887654 7789999999999999999999985

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.94  E-value=8.4e-28  Score=207.67  Aligned_cols=165  Identities=13%  Similarity=0.042  Sum_probs=128.4

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|++  |++++||++||+||||||||||+++|+|+++|++|+|.++|.++....    ........++++++...++.
T Consensus        24 ~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~----~~~~~~~~i~~v~q~~~~~~   99 (510)
T PRK15439         24 VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLT----PAKAHQLGIYLVPQEPLLFP   99 (510)
T ss_pred             ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCC----HHHHHhCCEEEEeccCccCC
Confidence            357874  458999999999999999999999999999999999999997664210    00000112334443322211


Q ss_pred             c---------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccccccc
Q 036195           84 E---------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVF  139 (183)
Q Consensus        84 ~---------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~  139 (183)
                      .               .......++++.+++....++++.+|||||+|+      ++.+|+.+   ||+...|+..+..+
T Consensus       100 ~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l  179 (510)
T PRK15439        100 NLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERL  179 (510)
T ss_pred             CCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHH
Confidence            1               001235678899999988999999999999983      47788887   99999999999999


Q ss_pred             ccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          140 SSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ..++..+..+ ..+|+++|||++.+...||+++.++
T Consensus       180 ~~~l~~~~~~-g~tiiivtHd~~~~~~~~d~i~~l~  214 (510)
T PRK15439        180 FSRIRELLAQ-GVGIVFISHKLPEIRQLADRISVMR  214 (510)
T ss_pred             HHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEE
Confidence            9999887655 7899999999999999999999997

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=99.94  E-value=8.1e-28  Score=188.21  Aligned_cols=158  Identities=16%  Similarity=0.028  Sum_probs=122.1

Q ss_pred             cceecCccEEEEEcCCCCcHHHHHHHHhcCCCC----CCcEEEEEecCccccccccchheeehhhhccCCCCcc--ccc-
Q 036195           11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSD----MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKS--ICH-   83 (183)
Q Consensus        11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p----~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~--l~~-   83 (183)
                      +|++++||+++|+||||||||||+++|+|+++|    ++|+|.++|.++....       .....++++++...  ++. 
T Consensus         6 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~-------~~~~~i~~~~q~~~~~~~~~   78 (230)
T TIGR02770         6 NLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLS-------IRGRHIATIMQNPRTAFNPL   78 (230)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhh-------hhhheeEEEecCchhhcCcc
Confidence            567999999999999999999999999999999    8999999998764210       00011222222210  000 


Q ss_pred             ------------------cccchHHHHHHHHcCCC---CccCCCCCCCChhhhhe------ecCchhhc---ccccccCc
Q 036195           84 ------------------EALAFPCLERIYVHGCP---SLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDE  133 (183)
Q Consensus        84 ------------------~~~~~~~l~vLe~l~L~---~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~  133 (183)
                                        ......+.++++.+++.   .+.+.++.+||+||+|+      +..+|+.+   ||....|+
T Consensus        79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~  158 (230)
T TIGR02770        79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDV  158 (230)
T ss_pred             cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCH
Confidence                              00012356778888987   57789999999999983      36788887   89999999


Q ss_pred             ccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          134 ATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ..+..+..++..+..+...+|+++||+++++.+.||+++.++
T Consensus       159 ~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~  200 (230)
T TIGR02770       159 VNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMD  200 (230)
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence            999999999998766557899999999999999999999996

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=4.7e-28  Score=190.23  Aligned_cols=165  Identities=12%  Similarity=0.029  Sum_probs=122.0

Q ss_pred             ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|+  ||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....    .......++++++...++.
T Consensus        18 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~----~~~~~~~i~~~~q~~~~~~   93 (237)
T PRK11614         18 IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQT----AKIMREAVAIVPEGRRVFS   93 (237)
T ss_pred             ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCH----HHHHHhCEEEeccCcccCC
Confidence            35777  45689999999999999999999999999999999999999986542100    0000112333333221111


Q ss_pred             c-----------------ccchHHHHHHHHc-CCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccc
Q 036195           84 E-----------------ALAFPCLERIYVH-GCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATK  136 (183)
Q Consensus        84 ~-----------------~~~~~~l~vLe~l-~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~  136 (183)
                      .                 .......++++.+ ++....+.++.+||+||+|+      ++.+|+.+   ||+...|+..+
T Consensus        94 ~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~  173 (237)
T PRK11614         94 RMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIII  173 (237)
T ss_pred             CCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHH
Confidence            0                 0011233445666 46667788999999999983      36677776   89999999999


Q ss_pred             cccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          137 HVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ..+..++..+..+ ..+++++|||++.+.+.||+++.++
T Consensus       174 ~~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~  211 (237)
T PRK11614        174 QQIFDTIEQLREQ-GMTIFLVEQNANQALKLADRGYVLE  211 (237)
T ss_pred             HHHHHHHHHHHHC-CCEEEEEeCcHHHHHhhCCEEEEEe
Confidence            9999999887655 7899999999999999999999986

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=99.94  E-value=1.1e-27  Score=187.66  Aligned_cols=162  Identities=12%  Similarity=0.059  Sum_probs=127.0

Q ss_pred             ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195            7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE   84 (183)
Q Consensus         7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~   84 (183)
                      +++++  |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....     .  ...++++++....+..
T Consensus        14 ~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~-----~--~~~i~~~~q~~~~~~~   86 (232)
T cd03300          14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP-----H--KRPVNTVFQNYALFPH   86 (232)
T ss_pred             eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh-----h--hcceEEEecccccCCC
Confidence            57875  4689999999999999999999999999999999999999986643100     0  0122232322211110


Q ss_pred             -------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccc
Q 036195           85 -------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATK  136 (183)
Q Consensus        85 -------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~  136 (183)
                                         .......++++.+++..+.+..+.+||+||+|+      ++.+|+.+   ||....|+.++
T Consensus        87 ~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~  166 (232)
T cd03300          87 LTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLR  166 (232)
T ss_pred             CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence                               001134567888999999999999999999983      47788887   89999999999


Q ss_pred             cccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          137 HVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ..+...+..+..+..++|+++||+++.++..||+++.++
T Consensus       167 ~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~  205 (232)
T cd03300         167 KDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMN  205 (232)
T ss_pred             HHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEE
Confidence            999999998776668999999999999999999999986

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=99.94  E-value=1.3e-27  Score=188.85  Aligned_cols=164  Identities=15%  Similarity=0.019  Sum_probs=123.7

Q ss_pred             cccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCC-----CcEEEEEecCccccccccchheeehhhhccCCCCc
Q 036195            7 PHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDM-----SHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK   79 (183)
Q Consensus         7 ~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~-----~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~   79 (183)
                      ++++  ||++++||+++|+||||||||||+++|+|+++|+     +|+|.++|.++.....  . .......++++++..
T Consensus        15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~--~-~~~~~~~i~~v~q~~   91 (247)
T TIGR00972        15 EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKI--D-VVELRRRVGMVFQKP   91 (247)
T ss_pred             eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEcccccc--c-hHHHHhheEEEecCc
Confidence            5776  4568999999999999999999999999999998     9999999987642100  0 000001223333221


Q ss_pred             cccc-------------------cccchHHHHHHHHcCCC----CccCCCCCCCChhhhhe------ecCchhhc---cc
Q 036195           80 SICH-------------------EALAFPCLERIYVHGCP----SLRKLPFSLESGKRNGV------LIGEEEWW---NQ  127 (183)
Q Consensus        80 ~l~~-------------------~~~~~~~l~vLe~l~L~----~L~~~~~~~LSgGqk~~------i~~~~~w~---~~  127 (183)
                      .++.                   ........++++.+++.    ...+.++.+|||||+|+      ++.+|+.+   ||
T Consensus        92 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP  171 (247)
T TIGR00972        92 NPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEP  171 (247)
T ss_pred             ccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence            1110                   00012345678888997    67888999999999983      47788887   89


Q ss_pred             ccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          128 LEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       128 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +...|+..+..+..++..+..+  .+++++|||++.+...||+++.++
T Consensus       172 t~~LD~~~~~~l~~~l~~~~~~--~tiiivsH~~~~~~~~~d~i~~l~  217 (247)
T TIGR00972       172 TSALDPIATGKIEELIQELKKK--YTIVIVTHNMQQAARISDRTAFFY  217 (247)
T ss_pred             cccCCHHHHHHHHHHHHHHHhc--CeEEEEecCHHHHHHhCCEEEEEE
Confidence            9999999999999999887654  799999999999999999999997

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=99.94  E-value=1.2e-27  Score=186.81  Aligned_cols=165  Identities=14%  Similarity=0.060  Sum_probs=124.5

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      ++++++  |++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.....    .. ....++++++...++.
T Consensus        20 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~----~~-~~~~i~~~~q~~~l~~   94 (225)
T PRK10247         20 AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKP----EI-YRQQVSYCAQTPTLFG   94 (225)
T ss_pred             ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCH----HH-HHhccEEEeccccccc
Confidence            457774  5689999999999999999999999999999999999999876542100    00 0011222222211111


Q ss_pred             ---------------c-ccchHHHHHHHHcCCC-CccCCCCCCCChhhhhe------ecCchhhc---ccccccCccccc
Q 036195           84 ---------------E-ALAFPCLERIYVHGCP-SLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKH  137 (183)
Q Consensus        84 ---------------~-~~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~  137 (183)
                                     . .......++++.+++. .+.+.++.+||+||+|+      ++.+|+++   ||+...|+..+.
T Consensus        95 ~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~  174 (225)
T PRK10247         95 DTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKH  174 (225)
T ss_pred             ccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence                           0 0112345788899996 57899999999999983      47788887   899999999999


Q ss_pred             ccccceeecCcccccCCCCCCceeeeeecccceEEEEee
Q 036195          138 VFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICIDV  176 (183)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (183)
                      .+..++..+..+...+++++|||++++ ..||+++.+|=
T Consensus       175 ~l~~~l~~~~~~~~~tvii~sh~~~~~-~~~d~i~~l~~  212 (225)
T PRK10247        175 NVNEIIHRYVREQNIAVLWVTHDKDEI-NHADKVITLQP  212 (225)
T ss_pred             HHHHHHHHHHHhcCCEEEEEECChHHH-HhCCEEEEEec
Confidence            999999987666578999999999998 46999999973

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=8.2e-28  Score=193.31  Aligned_cols=163  Identities=13%  Similarity=0.069  Sum_probs=126.4

Q ss_pred             ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc--ccc
Q 036195            7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK--SIC   82 (183)
Q Consensus         7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~--~l~   82 (183)
                      ++|++  |+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....    ... ...++++++..  .++
T Consensus        21 ~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~----~~~-~~~i~~~~q~~~~~~~   95 (279)
T PRK13635         21 YALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETV----WDV-RRQVGMVFQNPDNQFV   95 (279)
T ss_pred             cceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcH----HHH-hhheEEEEeCHHHhcc
Confidence            47875  5689999999999999999999999999999999999999987643100    000 01122222211  000


Q ss_pred             ------------------ccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195           83 ------------------HEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT  135 (183)
Q Consensus        83 ------------------~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~  135 (183)
                                        .........++++.+++..+.++++.+||+||+|+      ++.+|+.+   ||+...|+.+
T Consensus        96 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~  175 (279)
T PRK13635         96 GATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRG  175 (279)
T ss_pred             cccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence                              00001235778888999999999999999999983      48889987   9999999999


Q ss_pred             ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+..++..+..+..++|+++||+++.+. .||+++.|+
T Consensus       176 ~~~l~~~l~~l~~~~~~tilivsH~~~~~~-~~d~i~~l~  214 (279)
T PRK13635        176 RREVLETVRQLKEQKGITVLSITHDLDEAA-QADRVIVMN  214 (279)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEEecCHHHHH-cCCEEEEEE
Confidence            999999999887766899999999999986 599999986

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=9.8e-28  Score=190.42  Aligned_cols=164  Identities=15%  Similarity=0.044  Sum_probs=124.9

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccc-
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSIC-   82 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~-   82 (183)
                      +++|++  |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....    ... ...++++++...++ 
T Consensus        15 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~----~~~-~~~i~~~~q~~~~~~   89 (255)
T PRK11231         15 KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSS----RQL-ARRLALLPQHHLTPE   89 (255)
T ss_pred             EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCH----HHH-hhheEEecccCCCCC
Confidence            467875  5689999999999999999999999999999999999999976532100    000 00122222211110 


Q ss_pred             -------------------c---cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---cccccc
Q 036195           83 -------------------H---EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWD  131 (183)
Q Consensus        83 -------------------~---~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~  131 (183)
                                         .   ........++++.+++..+.+.++.+||+||+|+      ++.+|+.+   ||....
T Consensus        90 ~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~L  169 (255)
T PRK11231         90 GITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYL  169 (255)
T ss_pred             CccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence                               0   0011234667888999888999999999999983      47788887   899999


Q ss_pred             CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      |+.++..+..++..+..+ ..+++++||+++.+.+.||+++.++
T Consensus       170 D~~~~~~l~~~l~~l~~~-~~tiii~tH~~~~~~~~~d~i~~l~  212 (255)
T PRK11231        170 DINHQVELMRLMRELNTQ-GKTVVTVLHDLNQASRYCDHLVVLA  212 (255)
T ss_pred             CHHHHHHHHHHHHHHHHC-CCEEEEEECCHHHHHHhcCEEEEEE
Confidence            999999999999877655 7899999999999999999999996

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=9.7e-28  Score=192.95  Aligned_cols=165  Identities=17%  Similarity=0.109  Sum_probs=126.1

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc--cc
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK--SI   81 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~--~l   81 (183)
                      +++|+++  +|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....   ... ....++++++..  .+
T Consensus        23 ~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~---~~~-~~~~i~~v~q~~~~~~   98 (280)
T PRK13633         23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEEN---LWD-IRNKAGMVFQNPDNQI   98 (280)
T ss_pred             cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccc---HHH-HhhheEEEecChhhhh
Confidence            3588855  589999999999999999999999999999999999999987642100   000 001122222211  00


Q ss_pred             c------------------ccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcc
Q 036195           82 C------------------HEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEA  134 (183)
Q Consensus        82 ~------------------~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~  134 (183)
                      +                  .........++++.+++..+.++++.+||+||+|+      +..+|+.+   ||....|+.
T Consensus        99 ~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~  178 (280)
T PRK13633         99 VATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPS  178 (280)
T ss_pred             ccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence            0                  00011235677889999999999999999999983      47788876   899999999


Q ss_pred             cccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          135 TKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      .+..+..++..+..+...+|+++|||++++.. ||+++.++
T Consensus       179 ~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v~~l~  218 (280)
T PRK13633        179 GRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMD  218 (280)
T ss_pred             HHHHHHHHHHHHHHhcCCEEEEEecChHHHhc-CCEEEEEE
Confidence            99999999998866668899999999999876 99999996

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.94  E-value=1.7e-27  Score=183.21  Aligned_cols=162  Identities=11%  Similarity=0.087  Sum_probs=123.7

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      ++++++  |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....     . ....++++++...++.
T Consensus        14 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~-----~-~~~~~~~~~~~~~~~~   87 (204)
T PRK13538         14 RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRD-----E-YHQDLLYLGHQPGIKT   87 (204)
T ss_pred             EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchH-----H-hhhheEEeCCccccCc
Confidence            357774  5689999999999999999999999999999999999999977542100     0 0011222222111110


Q ss_pred             c----------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccc
Q 036195           84 E----------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHV  138 (183)
Q Consensus        84 ~----------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~  138 (183)
                      .                .....+.++++.+++....++++.+||+||+|+      +..+|+.+   ||....|+..+..
T Consensus        88 ~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~  167 (204)
T PRK13538         88 ELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVAR  167 (204)
T ss_pred             CCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHH
Confidence            0                111235678899999888899999999999983      47788886   8999999999999


Q ss_pred             cccceeecCcccccCCCCCCceeeeeecccceEEEE
Q 036195          139 FSSKLIITTPQTVISIPQPSYTYEATIRPRYELICI  174 (183)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (183)
                      +..++.....+ ..+++++|||++++-++-+|+|.+
T Consensus       168 l~~~l~~~~~~-~~tiii~sh~~~~i~~~~~~~~~~  202 (204)
T PRK13538        168 LEALLAQHAEQ-GGMVILTTHQDLPVASDKVRKLRL  202 (204)
T ss_pred             HHHHHHHHHHC-CCEEEEEecChhhhccCCceEEec
Confidence            99999877544 678999999999999999999876

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=99.94  E-value=1.4e-27  Score=189.64  Aligned_cols=164  Identities=13%  Similarity=0.040  Sum_probs=124.9

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcc---
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKS---   80 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~---   80 (183)
                      +++|++  |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....    ... ...++++++...   
T Consensus        14 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~----~~~-~~~i~~~~q~~~~~~   88 (256)
T TIGR03873        14 RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSR----RAR-ARRVALVEQDSDTAV   88 (256)
T ss_pred             EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCH----HHH-hhheEEecccCccCC
Confidence            467874  4689999999999999999999999999999999999999976542100    000 001122221110   


Q ss_pred             -----------------ccc---cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---cccccc
Q 036195           81 -----------------ICH---EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWD  131 (183)
Q Consensus        81 -----------------l~~---~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~  131 (183)
                                       .+.   ........++++.+++..+.+.++.+||+||+|+      +..+|+.|   ||....
T Consensus        89 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~L  168 (256)
T TIGR03873        89 PLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHL  168 (256)
T ss_pred             CCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccC
Confidence                             000   0011235677888999988999999999999983      36788887   899999


Q ss_pred             CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      |+..+..+..++..+..+ ..+|+++|||++.+.+.||++++++
T Consensus       169 D~~~~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~  211 (256)
T TIGR03873       169 DVRAQLETLALVRELAAT-GVTVVAALHDLNLAASYCDHVVVLD  211 (256)
T ss_pred             CHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEe
Confidence            999999999999887654 6789999999999999999999996

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=99.94  E-value=1.1e-27  Score=189.35  Aligned_cols=157  Identities=13%  Similarity=0.024  Sum_probs=118.6

Q ss_pred             eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcccccc----ccchheeehhhhccCCCCccccccccch
Q 036195           13 EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKIS----VCSFILIRRAYFFKLPNLKSICHEALAF   88 (183)
Q Consensus        13 ~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~----~~~~~~l~~~~lg~lp~l~~l~~~~~~~   88 (183)
                      ++++||+++|+||||||||||+++|+|+++|++|+|.++|..+.-...    ....+..+.+... ...   .  .....
T Consensus        21 ~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~-~~~---~--~~~~~   94 (246)
T cd03237          21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSI-TKD---F--YTHPY   94 (246)
T ss_pred             CcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHH-hhh---c--cccHH
Confidence            456899999999999999999999999999999999998853321100    0000111111000 000   0  00112


Q ss_pred             HHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCcccccCCCCCCc
Q 036195           89 PCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSY  159 (183)
Q Consensus        89 ~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (183)
                      ...++++.+++....++++.+|||||+|+      ++.+|+.+   ||....|+..+..+...+..+..+...+++++||
T Consensus        95 ~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH  174 (246)
T cd03237          95 FKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEH  174 (246)
T ss_pred             HHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence            34678889999988999999999999983      47788887   8999999999999999998877666789999999


Q ss_pred             eeeeeecccceEEEEe
Q 036195          160 TYEATIRPRYELICID  175 (183)
Q Consensus       160 ~~~~~~~~~~~~~~~~  175 (183)
                      |++++...||+++.++
T Consensus       175 d~~~~~~~~d~i~~l~  190 (246)
T cd03237         175 DIIMIDYLADRLIVFE  190 (246)
T ss_pred             CHHHHHHhCCEEEEEc
Confidence            9999999999999985

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=6.7e-28  Score=194.68  Aligned_cols=168  Identities=13%  Similarity=0.059  Sum_probs=124.3

Q ss_pred             ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccc-cccchheeehhhhccCCCCc--cc
Q 036195            7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKI-SVCSFILIRRAYFFKLPNLK--SI   81 (183)
Q Consensus         7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~-~~~~~~~l~~~~lg~lp~l~--~l   81 (183)
                      ++|++  |++++||++||+||||||||||+++|+|+++|++|+|.++|.++.... ........ ...++++++..  .+
T Consensus        25 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~-~~~i~~v~q~~~~~~  103 (289)
T PRK13645         25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRL-RKEIGLVFQFPEYQL  103 (289)
T ss_pred             ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHH-hccEEEEEeCcchhh
Confidence            47875  569999999999999999999999999999999999999997653100 00000000 01122222211  00


Q ss_pred             c-----c---------cc----cchHHHHHHHHcCCC-CccCCCCCCCChhhhhe------ecCchhhc---ccccccCc
Q 036195           82 C-----H---------EA----LAFPCLERIYVHGCP-SLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDE  133 (183)
Q Consensus        82 ~-----~---------~~----~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~  133 (183)
                      +     .         ..    ......++++.++++ .+.++++.+||+||+|+      +..+|+.+   ||+...|+
T Consensus       104 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~  183 (289)
T PRK13645        104 FQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDP  183 (289)
T ss_pred             hhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCH
Confidence            0     0         00    011245678888995 68899999999999983      47788887   99999999


Q ss_pred             ccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          134 ATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ..+..+..++..+..+...+|+|+||+++.+.+.||+++.++
T Consensus       184 ~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~  225 (289)
T PRK13645        184 KGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMH  225 (289)
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEE
Confidence            999999999987766557899999999999999999999997

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=99.94  E-value=1.2e-27  Score=186.44  Aligned_cols=163  Identities=14%  Similarity=0.139  Sum_probs=120.4

Q ss_pred             ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcccc---ccccc-h---------heeehhhhccCCCC
Q 036195           12 IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKK---ISVCS-F---------ILIRRAYFFKLPNL   78 (183)
Q Consensus        12 l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~---~~~~~-~---------~~l~~~~lg~lp~l   78 (183)
                      |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...   ..+.. .         +..+.+..+.....
T Consensus         1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~   80 (223)
T TIGR03771         1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHI   80 (223)
T ss_pred             CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhcccccc
Confidence            57899999999999999999999999999999999999999865311   11100 0         00000000000000


Q ss_pred             cccccc--ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecC
Q 036195           79 KSICHE--ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITT  147 (183)
Q Consensus        79 ~~l~~~--~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~  147 (183)
                      ......  .......++++.+++....+.++.+||+||+|+      +..+|+.+   ||+...|+.++..+..++..+.
T Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~  160 (223)
T TIGR03771        81 GWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELA  160 (223)
T ss_pred             ccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence            000000  011235678899999988899999999999983      47788887   9999999999999999998776


Q ss_pred             cccccCCCCCCceeeeeecccceEEEEe
Q 036195          148 PQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      .+ ..+++++|||++.+.+.||+++.+|
T Consensus       161 ~~-~~tvii~sH~~~~~~~~~d~i~~l~  187 (223)
T TIGR03771       161 GA-GTAILMTTHDLAQAMATCDRVVLLN  187 (223)
T ss_pred             Hc-CCEEEEEeCCHHHHHHhCCEEEEEC
Confidence            44 7899999999999999999999873

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.94  E-value=1e-27  Score=207.18  Aligned_cols=165  Identities=14%  Similarity=0.023  Sum_probs=126.2

Q ss_pred             ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccc--
Q 036195            6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSI--   81 (183)
Q Consensus         6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l--   81 (183)
                      +++++  ||++++||++||+||||||||||+|+|+|+++|++|+|.++|.++.....    .......++++++...+  
T Consensus        18 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~----~~~~~~~i~~v~q~~~~~~   93 (510)
T PRK09700         18 VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDH----KLAAQLGIGIIYQELSVID   93 (510)
T ss_pred             eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCH----HHHHHCCeEEEeecccccC
Confidence            35787  45689999999999999999999999999999999999999977642100    00000011222111100  


Q ss_pred             ------------------cc------cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccc
Q 036195           82 ------------------CH------EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQL  128 (183)
Q Consensus        82 ------------------~~------~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l  128 (183)
                                        +.      ........++++.+++....++++.+|||||+|+      ++.+|+.+   ||.
T Consensus        94 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt  173 (510)
T PRK09700         94 ELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPT  173 (510)
T ss_pred             CCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence                              00      0011235678899999988999999999999983      47788887   899


Q ss_pred             cccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          129 EWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       129 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ..-|+..+..+..++..+..+ ..+|+++|||++.+...||++++++
T Consensus       174 ~~LD~~~~~~l~~~l~~l~~~-g~tiiivsHd~~~~~~~~d~v~~l~  219 (510)
T PRK09700        174 SSLTNKEVDYLFLIMNQLRKE-GTAIVYISHKLAEIRRICDRYTVMK  219 (510)
T ss_pred             CCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEE
Confidence            999999999999999988655 7899999999999999999999997

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=1.5e-27  Score=187.84  Aligned_cols=169  Identities=13%  Similarity=-0.017  Sum_probs=126.0

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcccccc-ccchheeehhhhccCCCCcccc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKIS-VCSFILIRRAYFFKLPNLKSIC   82 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~-~~~~~~l~~~~lg~lp~l~~l~   82 (183)
                      +++|++  |++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++..... ...........++++++...++
T Consensus        15 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~   94 (242)
T PRK11124         15 HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLW   94 (242)
T ss_pred             eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCcccc
Confidence            367875  5689999999999999999999999999999999999999986520000 0000000001233333322211


Q ss_pred             cc--------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCc
Q 036195           83 HE--------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDE  133 (183)
Q Consensus        83 ~~--------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~  133 (183)
                      ..                    .......++++.+++..+.+.++.+|||||+|+      +..+|+++   ||....|+
T Consensus        95 ~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~  174 (242)
T PRK11124         95 PHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDP  174 (242)
T ss_pred             CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCH
Confidence            10                    001134667888999988899999999999983      37788887   89999999


Q ss_pred             ccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          134 ATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ..+..+..++..+..+ ..+++++|||++.+...||++++++
T Consensus       175 ~~~~~l~~~l~~~~~~-~~tii~~sh~~~~~~~~~d~i~~l~  215 (242)
T PRK11124        175 EITAQIVSIIRELAET-GITQVIVTHEVEVARKTASRVVYME  215 (242)
T ss_pred             HHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhcCEEEEEE
Confidence            9999999999887654 7889999999999999999999996

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=99.93  E-value=1.9e-27  Score=188.91  Aligned_cols=169  Identities=11%  Similarity=0.019  Sum_probs=126.5

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccc---cc---cch--heeehhhhccC
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKI---SV---CSF--ILIRRAYFFKL   75 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~---~~---~~~--~~l~~~~lg~l   75 (183)
                      ++++++  |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++....   ..   ...  .......++++
T Consensus        18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v   97 (257)
T PRK10619         18 HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMV   97 (257)
T ss_pred             EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEEE
Confidence            357774  568999999999999999999999999999999999999997653200   00   000  00001234444


Q ss_pred             CCCcccccc------c--------------cchHHHHHHHHcCCCCc-cCCCCCCCChhhhhe------ecCchhhc---
Q 036195           76 PNLKSICHE------A--------------LAFPCLERIYVHGCPSL-RKLPFSLESGKRNGV------LIGEEEWW---  125 (183)
Q Consensus        76 p~l~~l~~~------~--------------~~~~~l~vLe~l~L~~L-~~~~~~~LSgGqk~~------i~~~~~w~---  125 (183)
                      ++...++..      .              ......++++.+++... .+.++.+||+||+|+      +..+|+.+   
T Consensus        98 ~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD  177 (257)
T PRK10619         98 FQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFD  177 (257)
T ss_pred             ecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            443222211      0              01124567888999876 488899999999983      47788887   


Q ss_pred             ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          126 NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       126 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ||....|+..+..+..++..+..+ .++|+++|||++.+.+.|||++.|+
T Consensus       178 EPt~~LD~~~~~~l~~~l~~l~~~-g~tiiivsH~~~~~~~~~d~i~~l~  226 (257)
T PRK10619        178 EPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLH  226 (257)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEE
Confidence            899999999999999999888655 8999999999999999999999997

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=99.93  E-value=1.8e-27  Score=188.18  Aligned_cols=169  Identities=12%  Similarity=0.016  Sum_probs=125.7

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcccccccc---chheeehhhhccCCCCcc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVC---SFILIRRAYFFKLPNLKS   80 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~---~~~~l~~~~lg~lp~l~~   80 (183)
                      +++|++  |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.......   .........++++++...
T Consensus        16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~   95 (250)
T PRK11264         16 QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFN   95 (250)
T ss_pred             eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcc
Confidence            367875  568999999999999999999999999999999999999987654210000   000000112333333221


Q ss_pred             cccc----------------c----cchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---cccccc
Q 036195           81 ICHE----------------A----LAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWD  131 (183)
Q Consensus        81 l~~~----------------~----~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~  131 (183)
                      ++..                .    ......++++.+++....+.++.+||+||+|+      +..+|+.+   ||....
T Consensus        96 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~L  175 (250)
T PRK11264         96 LFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSAL  175 (250)
T ss_pred             cCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence            1110                0    01124567888899888899999999999983      36778776   899999


Q ss_pred             CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      |+..+..+..++..+..+ ..+++++|||++.+.+.||++++++
T Consensus       176 D~~~~~~l~~~l~~~~~~-~~tvi~~tH~~~~~~~~~d~i~~l~  218 (250)
T PRK11264        176 DPELVGEVLNTIRQLAQE-KRTMVIVTHEMSFARDVADRAIFMD  218 (250)
T ss_pred             CHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEE
Confidence            999999999998877654 7899999999999999999999997

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=8.8e-28  Score=192.33  Aligned_cols=166  Identities=14%  Similarity=0.100  Sum_probs=125.1

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcc--c
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKS--I   81 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~--l   81 (183)
                      +++|++  |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....  ... .....++++++...  +
T Consensus        14 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~--~~~-~~~~~i~~v~q~~~~~~   90 (271)
T PRK13638         14 EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKR--GLL-ALRQQVATVFQDPEQQI   90 (271)
T ss_pred             cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccC--CHH-HHHhheEEEeeChhhcc
Confidence            357875  5689999999999999999999999999999999999999987631100  000 00011222222110  0


Q ss_pred             c-----c---------ccc----chHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcc
Q 036195           82 C-----H---------EAL----AFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEA  134 (183)
Q Consensus        82 ~-----~---------~~~----~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~  134 (183)
                      +     .         ...    .....++++.+++..+.++++.+|||||+|+      ++.+|+.+   ||....|+.
T Consensus        91 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~  170 (271)
T PRK13638         91 FYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPA  170 (271)
T ss_pred             ccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence            0     0         000    1124567888899888899999999999983      47788887   899999999


Q ss_pred             cccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          135 TKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      .+..+..++..+..+ ..+|+++|||++.+.+.||+++.++
T Consensus       171 ~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~d~i~~l~  210 (271)
T PRK13638        171 GRTQMIAIIRRIVAQ-GNHVIISSHDIDLIYEISDAVYVLR  210 (271)
T ss_pred             HHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEE
Confidence            999999999887654 7889999999999999999999986

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=99.93  E-value=1.5e-27  Score=189.98  Aligned_cols=169  Identities=14%  Similarity=0.139  Sum_probs=126.0

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCC---CcEEEEEecCcccccc-ccchheeehhhhccCCCCc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDM---SHKFAIYAVSLQKKIS-VCSFILIRRAYFFKLPNLK   79 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~---~G~I~~~g~~~~~~~~-~~~~~~l~~~~lg~lp~l~   79 (183)
                      +++|++  |++.+||+++|+||||||||||+++|+|+++|+   +|+|.++|.++..... ...... ....++++++..
T Consensus        17 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~-~~~~i~~~~q~~   95 (262)
T PRK09984         17 HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRK-SRANTGYIFQQF   95 (262)
T ss_pred             eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHH-HHhheEEEcccc
Confidence            467775  458999999999999999999999999999986   4999999986532100 000000 001122222211


Q ss_pred             cccc---------------------------cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc-
Q 036195           80 SICH---------------------------EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW-  125 (183)
Q Consensus        80 ~l~~---------------------------~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~-  125 (183)
                      .++.                           ........++++.+++....++++.+||+||+|+      +..+|+.+ 
T Consensus        96 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll  175 (262)
T PRK09984         96 NLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVIL  175 (262)
T ss_pred             ccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcCCCEEE
Confidence            1110                           0011235678888999888899999999999983      47788887 


Q ss_pred             --ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          126 --NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       126 --~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                        ||....|+..+..+..++..+..+...+++++|||++.+...||++++|+
T Consensus       176 lDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~  227 (262)
T PRK09984        176 ADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALR  227 (262)
T ss_pred             ecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence              99999999999999999998876657899999999999999999999996

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.93  E-value=2.7e-27  Score=204.54  Aligned_cols=165  Identities=12%  Similarity=0.026  Sum_probs=125.2

Q ss_pred             ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc---c
Q 036195            6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK---S   80 (183)
Q Consensus         6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~---~   80 (183)
                      ..+|+  ||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.....    .......++++++..   .
T Consensus       276 ~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~----~~~~~~~i~~v~q~~~~~~  351 (510)
T PRK09700        276 RKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSP----LDAVKKGMAYITESRRDNG  351 (510)
T ss_pred             CCcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCH----HHHHHCCcEEccCccccCC
Confidence            45787  45699999999999999999999999999999999999999976532100    000000122222210   0


Q ss_pred             cc---------------------------cc-ccchHHHHHHHHcCCC-CccCCCCCCCChhhhhe------ecCchhhc
Q 036195           81 IC---------------------------HE-ALAFPCLERIYVHGCP-SLRKLPFSLESGKRNGV------LIGEEEWW  125 (183)
Q Consensus        81 l~---------------------------~~-~~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~------i~~~~~w~  125 (183)
                      ++                           .. .......++++.+++. ...++++.+|||||+|+      +..+|+.+
T Consensus       352 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lL  431 (510)
T PRK09700        352 FFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVI  431 (510)
T ss_pred             CcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEE
Confidence            00                           00 0011346788999996 78899999999999983      36788887


Q ss_pred             ---ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          126 ---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       126 ---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                         ||+...|+..+..+..++..+..+ ..+|+++|||++.+...||++++++
T Consensus       432 lLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tvi~vsHd~~~~~~~~d~i~~l~  483 (510)
T PRK09700        432 IFDEPTRGIDVGAKAEIYKVMRQLADD-GKVILMVSSELPEIITVCDRIAVFC  483 (510)
T ss_pred             EECCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEcCCHHHHHhhCCEEEEEE
Confidence               999999999999999999988654 7889999999999999999999996

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=99.93  E-value=3.2e-27  Score=181.33  Aligned_cols=162  Identities=12%  Similarity=0.065  Sum_probs=124.6

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      ++++++  |+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++....     . .....++++++...++.
T Consensus        13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-----~-~~~~~i~~~~q~~~~~~   86 (201)
T cd03231          13 RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-----D-SIARGLLYLGHAPGIKT   86 (201)
T ss_pred             ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-----H-HhhhheEEeccccccCC
Confidence            357775  569999999999999999999999999999999999999987754210     0 00112333333221111


Q ss_pred             -------------cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccccccccc
Q 036195           84 -------------EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSS  141 (183)
Q Consensus        84 -------------~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~  141 (183)
                                   ........++++.+++..+.+.++.+||+||+|+      +..+|+++   ||....|+..+..+..
T Consensus        87 ~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~  166 (201)
T cd03231          87 TLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAE  166 (201)
T ss_pred             CcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Confidence                         0012245677899999988899999999999983      47788887   8999999999999999


Q ss_pred             ceeecCcccccCCCCCCceeeeeecccceEEEE
Q 036195          142 KLIITTPQTVISIPQPSYTYEATIRPRYELICI  174 (183)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (183)
                      ++.....+ ..+++++|||.......|++++.+
T Consensus       167 ~l~~~~~~-g~tiii~sH~~~~~~~~~~~~~~~  198 (201)
T cd03231         167 AMAGHCAR-GGMVVLTTHQDLGLSEAGARELDL  198 (201)
T ss_pred             HHHHHHhC-CCEEEEEecCchhhhhccceeEec
Confidence            99876554 778999999999999999999765

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.93  E-value=1.8e-27  Score=186.67  Aligned_cols=146  Identities=15%  Similarity=0.018  Sum_probs=127.4

Q ss_pred             cccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195            7 PHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE   84 (183)
Q Consensus         7 ~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~   84 (183)
                      .+++  ||+|++||++||+|+|||||||+-|+|.||++|++|+|+|+|+++....                       ..
T Consensus        27 ~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-----------------------~~   83 (268)
T COG4608          27 KAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-----------------------KE   83 (268)
T ss_pred             EEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc-----------------------hh
Confidence            5566  6679999999999999999999999999999999999999999875420                       11


Q ss_pred             ccchHHHHHHHHcCCCC-ccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCcccccCC
Q 036195           85 ALAFPCLERIYVHGCPS-LRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISI  154 (183)
Q Consensus        85 ~~~~~~l~vLe~l~L~~-L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~  154 (183)
                      .....+.++++.+++.. ...+.++++||||+|+      ++-+|+++   |+.+-.|..++..+..++..++.+...+.
T Consensus        84 ~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~  163 (268)
T COG4608          84 ERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTY  163 (268)
T ss_pred             HHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeE
Confidence            12345789999999875 7889999999999984      37788886   88999999999999999999999999999


Q ss_pred             CCCCceeeeeecccceEEEEe
Q 036195          155 PQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +.+|||+.+|-..|||+.+..
T Consensus       164 lFIsHDL~vv~~isdri~VMy  184 (268)
T COG4608         164 LFISHDLSVVRYISDRIAVMY  184 (268)
T ss_pred             EEEEEEHHhhhhhcccEEEEe
Confidence            999999999999999998865

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=99.93  E-value=1.6e-27  Score=187.11  Aligned_cols=161  Identities=14%  Similarity=0.116  Sum_probs=125.7

Q ss_pred             cccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc--
Q 036195            8 HLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH--   83 (183)
Q Consensus         8 ~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~--   83 (183)
                      ++++  |++.+||+++|+||||||||||+++|+|+++|++|+|+++|.++.....     .  ...++++++...++.  
T Consensus        14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~-----~--~~~i~~~~q~~~~~~~~   86 (235)
T cd03299          14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP-----E--KRDISYVPQNYALFPHM   86 (235)
T ss_pred             eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh-----h--HcCEEEEeecCccCCCc
Confidence            6764  5689999999999999999999999999999999999999986643100     0  011222222211111  


Q ss_pred             -----------------cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccccc
Q 036195           84 -----------------EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKH  137 (183)
Q Consensus        84 -----------------~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~  137 (183)
                                       ........++++.+++..+.++++.+||+||+|+      ++..|+.+   ||....|...+.
T Consensus        87 t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~  166 (235)
T cd03299          87 TVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKE  166 (235)
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHH
Confidence                             0011234677889999999999999999999983      47788887   899999999999


Q ss_pred             ccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          138 VFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      .+...+..+..+..++++++||+++.+.+.||+++.++
T Consensus       167 ~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~  204 (235)
T cd03299         167 KLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIML  204 (235)
T ss_pred             HHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEE
Confidence            99999988766668899999999999999999999996

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=99.93  E-value=1.7e-27  Score=190.80  Aligned_cols=169  Identities=15%  Similarity=0.050  Sum_probs=122.8

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcccc-----ccccc-hhe---------ee
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKK-----ISVCS-FIL---------IR   68 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~-----~~~~~-~~~---------l~   68 (183)
                      +++|++  |++++||++||+||||||||||+++|+|+++|++|+|.++|.++...     ..+.+ -+.         ..
T Consensus        20 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~   99 (272)
T PRK15056         20 HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVED   99 (272)
T ss_pred             cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEeccccccccCCCcchhh
Confidence            457875  56899999999999999999999999999999999999999765321     00000 000         00


Q ss_pred             hhhhccCCCCccccc--cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccccc
Q 036195           69 RAYFFKLPNLKSICH--EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKH  137 (183)
Q Consensus        69 ~~~lg~lp~l~~l~~--~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~  137 (183)
                      ...++..........  ........++++.+++....++++.+|||||+|+      +..+|+.+   ||+...|+..+.
T Consensus       100 ~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~  179 (272)
T PRK15056        100 VVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEA  179 (272)
T ss_pred             heecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence            000000000000000  0011234567899999988899999999999983      46778887   999999999999


Q ss_pred             ccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          138 VFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      .+..++..+..+ ..+++++|||++.+...||+++.++
T Consensus       180 ~l~~~L~~~~~~-g~tviivsH~~~~~~~~~d~v~~~~  216 (272)
T PRK15056        180 RIISLLRELRDE-GKTMLVSTHNLGSVTEFCDYTVMVK  216 (272)
T ss_pred             HHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEC
Confidence            999999887655 7889999999999999999987653

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=99.93  E-value=3e-27  Score=186.11  Aligned_cols=165  Identities=13%  Similarity=-0.061  Sum_probs=121.7

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCC--CCCCcEEEEEecCccccccccchheeehhhhccCCCCccc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMF--SDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSI   81 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~--~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l   81 (183)
                      +++|++  |++++||+++|+||||||||||+++|+|+.  +|++|+|.++|.++.....    .......++++++...+
T Consensus        13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~----~~~~~~~i~~v~q~~~~   88 (243)
T TIGR01978        13 KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEP----DERARAGLFLAFQYPEE   88 (243)
T ss_pred             EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCH----HHhhccceEeeeccccc
Confidence            357774  569999999999999999999999999995  7999999999986542100    00000112222221111


Q ss_pred             ccc--------------------------ccchHHHHHHHHcCCC-CccCCCCC-CCChhhhhe------ecCchhhc--
Q 036195           82 CHE--------------------------ALAFPCLERIYVHGCP-SLRKLPFS-LESGKRNGV------LIGEEEWW--  125 (183)
Q Consensus        82 ~~~--------------------------~~~~~~l~vLe~l~L~-~L~~~~~~-~LSgGqk~~------i~~~~~w~--  125 (183)
                      +..                          .......++++.++++ .+.++++. +||+||+|+      +..+|+.+  
T Consensus        89 ~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llll  168 (243)
T TIGR01978        89 IPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAIL  168 (243)
T ss_pred             cCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEe
Confidence            100                          0012346678888997 56778887 599999983      37788887  


Q ss_pred             -ccccccCcccccccccceeecCcccccCCCCCCceeeeeecc-cceEEEEe
Q 036195          126 -NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRP-RYELICID  175 (183)
Q Consensus       126 -~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  175 (183)
                       ||+...|+..+..+..++..+..+ ..+++++|||++.+... ||++++++
T Consensus       169 DEPt~~LD~~~~~~l~~~l~~~~~~-~~tvi~vsH~~~~~~~~~~d~i~~l~  219 (243)
T TIGR01978       169 DEIDSGLDIDALKIVAEGINRLREP-DRSFLIITHYQRLLNYIKPDYVHVLL  219 (243)
T ss_pred             cCCcccCCHHHHHHHHHHHHHHHHC-CcEEEEEEecHHHHHhhcCCeEEEEe
Confidence             899999999999999999887543 67899999999999987 89999986

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=99.93  E-value=2.2e-27  Score=184.56  Aligned_cols=167  Identities=11%  Similarity=0.022  Sum_probs=126.2

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      ++++++  |++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++...... . .......++++++...++.
T Consensus        18 ~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~-~-~~~~~~~i~~~~q~~~~~~   95 (220)
T TIGR02982        18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEK-E-LVQLRRNIGYIFQAHNLLG   95 (220)
T ss_pred             eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHh-H-HHHHHhheEEEcCChhhcC
Confidence            457875  45899999999999999999999999999999999999999866421000 0 0000012222222211111


Q ss_pred             ----------------c----ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcc
Q 036195           84 ----------------E----ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEA  134 (183)
Q Consensus        84 ----------------~----~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~  134 (183)
                                      .    .......++++.+++....+.++.+||+||+|+      ++.+|+.+   ||....|++
T Consensus        96 ~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~  175 (220)
T TIGR02982        96 FLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSK  175 (220)
T ss_pred             CCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHH
Confidence                            0    011235778899999988899999999999983      47788887   999999999


Q ss_pred             cccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          135 TKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ++..+..++..+..+...+++++||+++ +++.||+++.++
T Consensus       176 ~~~~l~~~l~~~~~~~~~tii~~sh~~~-~~~~~d~v~~l~  215 (220)
T TIGR02982       176 SGRDVVELMQKLAREQGCTILIVTHDNR-ILDVADRIVHME  215 (220)
T ss_pred             HHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHhhCCEEEEEE
Confidence            9999999998887656899999999998 578999999986

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.93  E-value=4.2e-27  Score=182.34  Aligned_cols=162  Identities=12%  Similarity=0.070  Sum_probs=125.5

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      ++++++  |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++....       . ...++++++...++.
T Consensus        24 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~-------~-~~~i~~~~q~~~~~~   95 (214)
T PRK13543         24 EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGD-------R-SRFMAYLGHLPGLKA   95 (214)
T ss_pred             ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchh-------h-hhceEEeecCccccc
Confidence            357774  569999999999999999999999999999999999999998664210       0 011223222211111


Q ss_pred             c----------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccc
Q 036195           84 E----------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHV  138 (183)
Q Consensus        84 ~----------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~  138 (183)
                      .                .......++++.+++....+.++.+||+||+|+      +..+|+.+   ||....|+..+..
T Consensus        96 ~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~  175 (214)
T PRK13543         96 DLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITL  175 (214)
T ss_pred             CCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence            0                011223567888999988899999999999983      37788887   8999999999999


Q ss_pred             cccceeecCcccccCCCCCCceeeeeecccceEEEEee
Q 036195          139 FSSKLIITTPQTVISIPQPSYTYEATIRPRYELICIDV  176 (183)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (183)
                      +..++.....+ ..+++++|||++++.+.|++++.++.
T Consensus       176 l~~~l~~~~~~-~~tiii~sH~~~~~~~~~~~i~~l~~  212 (214)
T PRK13543        176 VNRMISAHLRG-GGAALVTTHGAYAAPPVRTRMLTLEA  212 (214)
T ss_pred             HHHHHHHHHhC-CCEEEEEecChhhhhhhcceEEEEee
Confidence            99999877555 67899999999999999999998874

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=99.93  E-value=2.7e-27  Score=187.84  Aligned_cols=163  Identities=12%  Similarity=0.034  Sum_probs=124.9

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCC----CCcEEEEEecCccccccccchheeehhhhccCCCCc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSD----MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK   79 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p----~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~   79 (183)
                      +++|++  |++.+||+++|+||||||||||+++|+|+.+|    ++|+|.++|.++....       .....++++++..
T Consensus        16 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~-------~~~~~i~~v~q~~   88 (254)
T PRK10418         16 QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCA-------LRGRKIATIMQNP   88 (254)
T ss_pred             cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccc-------cccceEEEEecCC
Confidence            467875  46899999999999999999999999999999    9999999998763210       0001122222221


Q ss_pred             c--cc----------------c-cccchHHHHHHHHcCCCC---ccCCCCCCCChhhhhe------ecCchhhc---ccc
Q 036195           80 S--IC----------------H-EALAFPCLERIYVHGCPS---LRKLPFSLESGKRNGV------LIGEEEWW---NQL  128 (183)
Q Consensus        80 ~--l~----------------~-~~~~~~~l~vLe~l~L~~---L~~~~~~~LSgGqk~~------i~~~~~w~---~~l  128 (183)
                      .  +.                . ........++++.+++..   +.+.++.+||+||+|+      ++.+|+.+   ||.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt  168 (254)
T PRK10418         89 RSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPT  168 (254)
T ss_pred             ccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence            0  00                0 001123567788889876   5688999999999983      47788886   899


Q ss_pred             cccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          129 EWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       129 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ...|+..+..+...+..+..+...+|+++||+++.+.+.||+++.++
T Consensus       169 ~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~  215 (254)
T PRK10418        169 TDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMS  215 (254)
T ss_pred             cccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEE
Confidence            99999999999999987765557899999999999999999999996

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.93  E-value=2.3e-27  Score=209.15  Aligned_cols=167  Identities=13%  Similarity=-0.057  Sum_probs=128.1

Q ss_pred             ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc--ccc
Q 036195            7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK--SIC   82 (183)
Q Consensus         7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~--~l~   82 (183)
                      ++|++  |+|.+||++||+||||||||||+++|+|+++|++|+|+++|.++..... ...... ...+++++|..  .++
T Consensus       338 ~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~-~~~~~~-~~~i~~v~Q~~~~~l~  415 (623)
T PRK10261        338 HAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSP-GKLQAL-RRDIQFIFQDPYASLD  415 (623)
T ss_pred             EEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCH-HHHHHh-cCCeEEEecCchhhcC
Confidence            57874  5689999999999999999999999999999999999999986642100 000000 01233333321  111


Q ss_pred             cc--------------------ccchHHHHHHHHcCCC-CccCCCCCCCChhhhhe------ecCchhhc---ccccccC
Q 036195           83 HE--------------------ALAFPCLERIYVHGCP-SLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDD  132 (183)
Q Consensus        83 ~~--------------------~~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d  132 (183)
                      ..                    .....+.++++.+++. ...++++.+|||||+|+      ++.+|+.+   ||+...|
T Consensus       416 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD  495 (623)
T PRK10261        416 PRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALD  495 (623)
T ss_pred             CCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence            10                    0012356788999995 67899999999999983      37788887   9999999


Q ss_pred             cccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          133 EATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+..+..++..+..+...+++++|||++.+...||||++++
T Consensus       496 ~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~  538 (623)
T PRK10261        496 VSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMY  538 (623)
T ss_pred             HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence            9999999999998877778999999999999999999999996

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=99.93  E-value=2.5e-27  Score=186.28  Aligned_cols=163  Identities=13%  Similarity=0.059  Sum_probs=126.7

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|++  |++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++....      . ....++++++...++.
T Consensus        13 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~------~-~~~~i~~~~q~~~~~~   85 (237)
T TIGR00968        13 FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVH------A-RDRKIGFVFQHYALFK   85 (237)
T ss_pred             eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCC------h-hhcCEEEEecChhhcc
Confidence            467875  459999999999999999999999999999999999999998754210      0 0012223332221111


Q ss_pred             c-------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195           84 E-------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT  135 (183)
Q Consensus        84 ~-------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~  135 (183)
                      .                   .......++++.+++..+.+.++.+||+||+|+      +..+|+.+   ||....|+.+
T Consensus        86 ~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~  165 (237)
T TIGR00968        86 HLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKV  165 (237)
T ss_pred             CCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence            0                   001234677888999888899999999999983      36677776   8999999999


Q ss_pred             ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+..++..+..+..++++++||+.+.+.+.||+++.++
T Consensus       166 ~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~  205 (237)
T TIGR00968       166 RKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMS  205 (237)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEE
Confidence            9999999998766557999999999999999999999997

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=2.4e-27  Score=190.17  Aligned_cols=163  Identities=17%  Similarity=0.105  Sum_probs=123.7

Q ss_pred             ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcc--cc
Q 036195            7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKS--IC   82 (183)
Q Consensus         7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~--l~   82 (183)
                      ++|++  |+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.....   .... ...++++++...  ++
T Consensus        16 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~---~~~~-~~~i~~v~q~~~~~~~   91 (274)
T PRK13644         16 PALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSK---LQGI-RKLVGIVFQNPETQFV   91 (274)
T ss_pred             ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCcccc---HHHH-HhheEEEEEChhhhcc
Confidence            47874  5689999999999999999999999999999999999999987642100   0000 011222222110  00


Q ss_pred             -----c-------------cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195           83 -----H-------------EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT  135 (183)
Q Consensus        83 -----~-------------~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~  135 (183)
                           .             ......+.++++.+++..+.+.++..||+||+|+      ++.+|+.+   ||+...|+.+
T Consensus        92 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~  171 (274)
T PRK13644         92 GRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDS  171 (274)
T ss_pred             cchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence                 0             0011235667888999999999999999999983      47788887   8999999999


Q ss_pred             ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+..++..+..+ ..+|+++|||++.+ ..||+++.|+
T Consensus       172 ~~~l~~~l~~l~~~-g~til~~tH~~~~~-~~~d~v~~l~  209 (274)
T PRK13644        172 GIAVLERIKKLHEK-GKTIVYITHNLEEL-HDADRIIVMD  209 (274)
T ss_pred             HHHHHHHHHHHHhC-CCEEEEEecCHHHH-hhCCEEEEEE
Confidence            99999999887654 88999999999997 6799999996

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.93  E-value=1.6e-27  Score=189.64  Aligned_cols=163  Identities=16%  Similarity=0.183  Sum_probs=127.5

Q ss_pred             cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhh-------hccCCC------
Q 036195           11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAY-------FFKLPN------   77 (183)
Q Consensus        11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~-------lg~lp~------   77 (183)
                      ||+|++||++.|.|-||||||||+|++++|+.|++|+|.++|.++...... ....++...       ++.+|+      
T Consensus        48 sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~-~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~N  126 (386)
T COG4175          48 SLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAA-ELRELRRKKISMVFQSFALLPHRTVLEN  126 (386)
T ss_pred             eeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHH-HHHHHHhhhhhhhhhhhccccchhHhhh
Confidence            788999999999999999999999999999999999999999987642100 000000011       111111      


Q ss_pred             ------CccccccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccc
Q 036195           78 ------LKSICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSK  142 (183)
Q Consensus        78 ------l~~l~~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~  142 (183)
                            ...+.........+++++.+|+....+.++++|||||+|+      ++.+|+.|   |+++--||-++...|.-
T Consensus       127 v~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQde  206 (386)
T COG4175         127 VAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDE  206 (386)
T ss_pred             hhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHH
Confidence                  1222222223356888999999999999999999999984      47888887   88999999999999999


Q ss_pred             eeecCcccccCCCCCCceeeeeecccceEEEE
Q 036195          143 LIITTPQTVISIPQPSYTYEATIRPRYELICI  174 (183)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (183)
                      +-.++.+.-.+|..+||||++.+++-||+-+.
T Consensus       207 Ll~Lq~~l~KTIvFitHDLdEAlriG~rIaim  238 (386)
T COG4175         207 LLELQAKLKKTIVFITHDLDEALRIGDRIAIM  238 (386)
T ss_pred             HHHHHHHhCCeEEEEecCHHHHHhccceEEEe
Confidence            98899998999999999999999999997543

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.93  E-value=1.2e-27  Score=180.39  Aligned_cols=152  Identities=17%  Similarity=0.114  Sum_probs=114.7

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      ++++++  |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++....   .........++++++...+  
T Consensus        13 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~---~~~~~~~~~i~~~~q~~~~--   87 (178)
T cd03229          13 KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLE---DELPPLRRRIGMVFQDFAL--   87 (178)
T ss_pred             eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccc---hhHHHHhhcEEEEecCCcc--
Confidence            357774  568999999999999999999999999999999999999998664310   0000111234444443222  


Q ss_pred             cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCcccccCC
Q 036195           84 EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISI  154 (183)
Q Consensus        84 ~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~  154 (183)
                          ++..++.+++...         ||+||+|+      +..+|++|   ||....|+..+..+..++..+..+...++
T Consensus        88 ----~~~~t~~~~l~~~---------lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~ti  154 (178)
T cd03229          88 ----FPHLTVLENIALG---------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITV  154 (178)
T ss_pred             ----CCCCCHHHheeec---------CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence                2223344443322         99999983      47788887   99999999999999999988776657899


Q ss_pred             CCCCceeeeeecccceEEEEe
Q 036195          155 PQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +++|||.+.+...||+++.++
T Consensus       155 ii~sH~~~~~~~~~d~i~~l~  175 (178)
T cd03229         155 VLVTHDLDEAARLADRVVVLR  175 (178)
T ss_pred             EEEeCCHHHHHHhcCEEEEEe
Confidence            999999999999999999986

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=3e-27  Score=204.07  Aligned_cols=165  Identities=15%  Similarity=0.054  Sum_probs=125.8

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCC--CCcEEEEEecCccccccccchheeehhhhccCCCCccc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSD--MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSI   81 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p--~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l   81 (183)
                      +++|++  |++++||+++|+||||||||||+|+|+|+++|  ++|+|.++|.++.....    .......++++++...+
T Consensus        18 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~----~~~~~~~i~~v~q~~~~   93 (506)
T PRK13549         18 VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNI----RDTERAGIAIIHQELAL   93 (506)
T ss_pred             eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCH----HHHHHCCeEEEEecccc
Confidence            367874  56899999999999999999999999999986  89999999987642100    00000112222221100


Q ss_pred             c----------------------ccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccc
Q 036195           82 C----------------------HEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEW  130 (183)
Q Consensus        82 ~----------------------~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~  130 (183)
                      +                      .........++++.+++....++++.+|||||+|+      ++.+|+.+   ||...
T Consensus        94 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~  173 (506)
T PRK13549         94 VKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTAS  173 (506)
T ss_pred             CCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Confidence            0                      00011235678999999989999999999999983      47788887   89999


Q ss_pred             cCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          131 DDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       131 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      -|+..+..+..++..+..+ ..+++++|||++.+...||+++.|+
T Consensus       174 LD~~~~~~l~~~l~~l~~~-~~tvi~~tH~~~~~~~~~d~v~~l~  217 (506)
T PRK13549        174 LTESETAVLLDIIRDLKAH-GIACIYISHKLNEVKAISDTICVIR  217 (506)
T ss_pred             CCHHHHHHHHHHHHHHHHC-CCEEEEEeCcHHHHHHhcCEEEEEE
Confidence            9999999999999888544 7889999999999999999999997

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=2.8e-27  Score=190.49  Aligned_cols=163  Identities=15%  Similarity=0.082  Sum_probs=124.6

Q ss_pred             ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCC---cEEEEEecCccccccccchheeehhhhccCCCCc--
Q 036195            7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMS---HKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK--   79 (183)
Q Consensus         7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~---G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~--   79 (183)
                      +++++  |++.+||++||+||||||||||+++|+|+++|++   |+|.++|.++.....    ... ...++++++..  
T Consensus        21 ~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~----~~~-~~~ig~v~q~~~~   95 (282)
T PRK13640         21 PALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTV----WDI-REKVGIVFQNPDN   95 (282)
T ss_pred             cceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCH----HHH-HhheEEEEECHHH
Confidence            47775  4689999999999999999999999999999998   899999987643100    000 01122222211  


Q ss_pred             ccc-----c---------cc----cchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccC
Q 036195           80 SIC-----H---------EA----LAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDD  132 (183)
Q Consensus        80 ~l~-----~---------~~----~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d  132 (183)
                      .++     .         ..    ....+.++++.+++..+.++++..||+||+|+      ++.+|+++   ||....|
T Consensus        96 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD  175 (282)
T PRK13640         96 QFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLD  175 (282)
T ss_pred             hhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCC
Confidence            000     0         00    01235678899999999999999999999983      48889987   9999999


Q ss_pred             cccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          133 EATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +.++..+..++..+..+...+|+++||+++.+ ..||++++|+
T Consensus       176 ~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~-~~~d~i~~l~  217 (282)
T PRK13640        176 PAGKEQILKLIRKLKKKNNLTVISITHDIDEA-NMADQVLVLD  217 (282)
T ss_pred             HHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-HhCCEEEEEE
Confidence            99999999999877665578999999999998 4799999995

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.93  E-value=3.7e-27  Score=200.49  Aligned_cols=168  Identities=15%  Similarity=0.025  Sum_probs=127.9

Q ss_pred             cccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195            7 PHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE   84 (183)
Q Consensus         7 ~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~   84 (183)
                      .+++  ||++.+||++||+|+||||||||.|+|+|+.+|++|+|.++|.+..-... ..........+.+.-...++.+.
T Consensus       305 ~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~-~~~~~r~~~QmvFQdp~~SLnPr  383 (539)
T COG1123         305 KAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGG-ELRRLRRRIQMVFQDPYSSLNPR  383 (539)
T ss_pred             eeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccc-hhhhhhhheEEEEeCcccccCcc
Confidence            4455  56799999999999999999999999999999999999999987211100 00000001111111111111110


Q ss_pred             --------------------ccchHHHHHHHHcCCCC-ccCCCCCCCChhhhhe------ecCchhhc---ccccccCcc
Q 036195           85 --------------------ALAFPCLERIYVHGCPS-LRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEA  134 (183)
Q Consensus        85 --------------------~~~~~~l~vLe~l~L~~-L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~  134 (183)
                                          .....+.++++.++++. +.++++++|||||+|+      ++.+|+.+   |+++=.|+.
T Consensus       384 ~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvs  463 (539)
T COG1123         384 MTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVS  463 (539)
T ss_pred             ccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHH
Confidence                                01123567799999987 7999999999999984      47888887   889999999


Q ss_pred             cccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          135 TKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ++..+..++..++.+...+.+++|||+.+|...||||.+.+
T Consensus       464 vqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~  504 (539)
T COG1123         464 VQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMY  504 (539)
T ss_pred             HHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEE
Confidence            99999999999999999999999999999999999999876

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.93  E-value=5.5e-27  Score=202.60  Aligned_cols=163  Identities=12%  Similarity=0.071  Sum_probs=124.3

Q ss_pred             ccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc---ccc
Q 036195            8 HLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK---SIC   82 (183)
Q Consensus         8 ~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~---~l~   82 (183)
                      +|+  ||++++||++||+||||||||||+++|+|+.+|++|+|.++|.++.....    .......++|+++..   .++
T Consensus       278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~----~~~~~~~i~~v~q~~~~~~l~  353 (510)
T PRK15439        278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALST----AQRLARGLVYLPEDRQSSGLY  353 (510)
T ss_pred             CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCH----HHHHhCCcEECCCChhhCCcc
Confidence            566  45699999999999999999999999999999999999999976642100    000001123333210   000


Q ss_pred             c--------------------cc--cchHHHHHHHHcCCC-CccCCCCCCCChhhhhe------ecCchhhc---ccccc
Q 036195           83 H--------------------EA--LAFPCLERIYVHGCP-SLRKLPFSLESGKRNGV------LIGEEEWW---NQLEW  130 (183)
Q Consensus        83 ~--------------------~~--~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~  130 (183)
                      .                    ..  ......++++.+++. ...++++.+|||||+|+      ++.+|+.+   ||...
T Consensus       354 ~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~g  433 (510)
T PRK15439        354 LDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRG  433 (510)
T ss_pred             CCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcC
Confidence            0                    00  011245778899997 78899999999999983      36788887   99999


Q ss_pred             cCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          131 DDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       131 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      .|+..+..+..++..+..+ ..+|+++|||++++.+.||++++|+
T Consensus       434 LD~~~~~~l~~~l~~l~~~-g~tiIivsHd~~~i~~~~d~i~~l~  477 (510)
T PRK15439        434 VDVSARNDIYQLIRSIAAQ-NVAVLFISSDLEEIEQMADRVLVMH  477 (510)
T ss_pred             cChhHHHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEEE
Confidence            9999999999999888665 7889999999999999999999996

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.93  E-value=3.3e-27  Score=203.15  Aligned_cols=165  Identities=13%  Similarity=-0.016  Sum_probs=125.1

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccc-
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSIC-   82 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~-   82 (183)
                      +++|++  |++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.....    .......++++++...++ 
T Consensus        11 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~----~~~~~~~i~~v~q~~~~~~   86 (491)
T PRK10982         11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSS----KEALENGISMVHQELNLVL   86 (491)
T ss_pred             EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCH----HHHHhCCEEEEeccccccc
Confidence            357874  5689999999999999999999999999999999999999986542100    000000112222211000 


Q ss_pred             --------------------c-cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccC
Q 036195           83 --------------------H-EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDD  132 (183)
Q Consensus        83 --------------------~-~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d  132 (183)
                                          . ........++++.+++....++++.+|||||+|+      ++.+|+.+   ||....|
T Consensus        87 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD  166 (491)
T PRK10982         87 QRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLT  166 (491)
T ss_pred             CCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Confidence                                0 0001235677888999888899999999999983      47788887   9999999


Q ss_pred             cccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          133 EATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+..+..++..+..+ ..+++++|||++++...||+++.++
T Consensus       167 ~~~~~~l~~~l~~l~~~-g~tvii~tH~~~~~~~~~d~i~~l~  208 (491)
T PRK10982        167 EKEVNHLFTIIRKLKER-GCGIVYISHKMEEIFQLCDEITILR  208 (491)
T ss_pred             HHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHHhCCEEEEEE
Confidence            99999999998887544 7899999999999999999999997

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=3.9e-27  Score=188.63  Aligned_cols=164  Identities=15%  Similarity=0.080  Sum_probs=124.2

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc--cc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK--SI   81 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~--~l   81 (183)
                      +++|++  |++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++....    .... ...++++++..  .+
T Consensus        22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~----~~~~-~~~i~~v~q~~~~~~   96 (271)
T PRK13632         22 NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKEN----LKEI-RKKIGIIFQNPDNQF   96 (271)
T ss_pred             ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCC----HHHH-hcceEEEEeCHHHhc
Confidence            367875  568999999999999999999999999999999999999998764210    0000 01122222221  00


Q ss_pred             -----ccc---------c----cchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcc
Q 036195           82 -----CHE---------A----LAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEA  134 (183)
Q Consensus        82 -----~~~---------~----~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~  134 (183)
                           ..+         .    ......++++.+++....+.++.+||+||+|+      ++.+|+.+   ||+...|+.
T Consensus        97 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~  176 (271)
T PRK13632         97 IGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPK  176 (271)
T ss_pred             CcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence                 000         0    01124667888999988999999999999983      47788886   899999999


Q ss_pred             cccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          135 TKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ++..+..++..+..+...+++++||+++.+. .||+++.++
T Consensus       177 ~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v~~l~  216 (271)
T PRK13632        177 GKREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFS  216 (271)
T ss_pred             HHHHHHHHHHHHHHhcCcEEEEEEechhHHh-hCCEEEEEE
Confidence            9999999998876654589999999999985 799999986

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=99.93  E-value=4.3e-27  Score=182.74  Aligned_cols=162  Identities=15%  Similarity=0.096  Sum_probs=118.7

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      ++++++  |++++|++++|+||||||||||+++|+|+.+|++|+|.++|.++.....    ... ...++++++...++.
T Consensus        17 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~----~~~-~~~i~~~~q~~~~~~   91 (220)
T cd03245          17 IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDP----ADL-RRNIGYVPQDVTLFY   91 (220)
T ss_pred             cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCH----HHH-HhhEEEeCCCCcccc
Confidence            357875  5689999999999999999999999999999999999999976542100    000 012333333221111


Q ss_pred             -----c-------ccchHHHHHHHHcCCCCccCCC-----------CCCCChhhhhe------ecCchhhc---cccccc
Q 036195           84 -----E-------ALAFPCLERIYVHGCPSLRKLP-----------FSLESGKRNGV------LIGEEEWW---NQLEWD  131 (183)
Q Consensus        84 -----~-------~~~~~~l~vLe~l~L~~L~~~~-----------~~~LSgGqk~~------i~~~~~w~---~~l~~~  131 (183)
                           +       .......++++.+++.++.+..           +.+|||||+|+      +..+|+.+   ||....
T Consensus        92 ~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~L  171 (220)
T cd03245          92 GTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAM  171 (220)
T ss_pred             chHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccC
Confidence                 0       0112344567777776655543           46999999983      36778876   899999


Q ss_pred             CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      |+.++..+..++.....+  .+|+++|||++.+ ..||+++.|+
T Consensus       172 D~~~~~~l~~~l~~~~~~--~tii~~sH~~~~~-~~~d~v~~l~  212 (220)
T cd03245         172 DMNSEERLKERLRQLLGD--KTLIIITHRPSLL-DLVDRIIVMD  212 (220)
T ss_pred             CHHHHHHHHHHHHHhcCC--CEEEEEeCCHHHH-HhCCEEEEEe
Confidence            999999999999877654  7899999999975 8999999986

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.93  E-value=3.7e-27  Score=202.74  Aligned_cols=164  Identities=13%  Similarity=0.067  Sum_probs=126.9

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcc---
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKS---   80 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~---   80 (183)
                      +++|++  |++++||+++|+||||||||||+|+|+|+++|++|+|.++|.++....    .... ...++++++...   
T Consensus        16 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~----~~~~-~~~i~~~~q~~~~~~   90 (490)
T PRK10938         16 TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLS----FEQL-QKLVSDEWQRNNTDM   90 (490)
T ss_pred             eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCC----HHHH-HHHhceeccCcchhh
Confidence            357875  568999999999999999999999999999999999999886653210    0000 011233332110   


Q ss_pred             -----------ccccc-----cchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195           81 -----------ICHEA-----LAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT  135 (183)
Q Consensus        81 -----------l~~~~-----~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~  135 (183)
                                 +....     ......++++.+++..+.++++.+|||||+|+      ++.+|+.+   ||+...|+..
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~  170 (490)
T PRK10938         91 LSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVAS  170 (490)
T ss_pred             cccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHH
Confidence                       00000     01235678999999999999999999999983      37788887   9999999999


Q ss_pred             ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+..++..+..+ ..+++++|||++.+.+.||++++|+
T Consensus       171 ~~~l~~~l~~~~~~-g~tvii~tH~~~~~~~~~d~v~~l~  209 (490)
T PRK10938        171 RQQLAELLASLHQS-GITLVLVLNRFDEIPDFVQFAGVLA  209 (490)
T ss_pred             HHHHHHHHHHHHhc-CCeEEEEeCCHHHHHhhCCEEEEEE
Confidence            99999999888655 7899999999999999999999997

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=2.9e-27  Score=193.37  Aligned_cols=167  Identities=17%  Similarity=0.088  Sum_probs=125.4

Q ss_pred             cccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccc-------c-----ccchheeehhhh
Q 036195            7 PHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKI-------S-----VCSFILIRRAYF   72 (183)
Q Consensus         7 ~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~-------~-----~~~~~~l~~~~l   72 (183)
                      ++|+++  +|++||++||+||||||||||+++|+|+++|++|+|+++|.++....       .     ...... ....+
T Consensus        40 ~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i  118 (320)
T PRK13631         40 VALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKE-LRRRV  118 (320)
T ss_pred             cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHH-HHhcE
Confidence            588855  58999999999999999999999999999999999999987653210       0     000000 01123


Q ss_pred             ccCCCCc--cccc------------------cccchHHHHHHHHcCCC-CccCCCCCCCChhhhhe------ecCchhhc
Q 036195           73 FKLPNLK--SICH------------------EALAFPCLERIYVHGCP-SLRKLPFSLESGKRNGV------LIGEEEWW  125 (183)
Q Consensus        73 g~lp~l~--~l~~------------------~~~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~------i~~~~~w~  125 (183)
                      +++++..  .++.                  ......+.++++.+++. .+.++++.+|||||+|+      ++.+|+.+
T Consensus       119 g~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iL  198 (320)
T PRK13631        119 SMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEIL  198 (320)
T ss_pred             EEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence            3333321  1110                  00112345678889996 68899999999999983      47788887


Q ss_pred             ---ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          126 ---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       126 ---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                         ||....|+.++..+...+..+..+ ..+|+++|||++.+.+.||+++.++
T Consensus       199 LLDEPtsgLD~~~~~~l~~~L~~l~~~-g~TiiivtHd~~~~~~~adri~vl~  250 (320)
T PRK13631        199 IFDEPTAGLDPKGEHEMMQLILDAKAN-NKTVFVITHTMEHVLEVADEVIVMD  250 (320)
T ss_pred             EEECCccCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEEEE
Confidence               899999999999999999877655 7899999999999999999999987

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.93  E-value=5.5e-27  Score=202.19  Aligned_cols=164  Identities=13%  Similarity=0.090  Sum_probs=125.1

Q ss_pred             cccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc---cc
Q 036195            7 PHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK---SI   81 (183)
Q Consensus         7 ~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~---~l   81 (183)
                      ++++  ||++.+||+++|+||||||||||+++|+|+++|++|+|.++|+++.....    .......++++++..   .+
T Consensus       266 ~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~----~~~~~~~i~~v~q~~~~~~~  341 (501)
T PRK10762        266 PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSP----QDGLANGIVYISEDRKRDGL  341 (501)
T ss_pred             CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCH----HHHHHCCCEEecCccccCCC
Confidence            4676  55689999999999999999999999999999999999999976542100    000001122222221   00


Q ss_pred             c-------------------------ccccchHHHHHHHHcCCC-CccCCCCCCCChhhhhe------ecCchhhc---c
Q 036195           82 C-------------------------HEALAFPCLERIYVHGCP-SLRKLPFSLESGKRNGV------LIGEEEWW---N  126 (183)
Q Consensus        82 ~-------------------------~~~~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~------i~~~~~w~---~  126 (183)
                      +                         .........++++.+++. ...++++.+|||||+|+      ++.+|+.+   |
T Consensus       342 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDE  421 (501)
T PRK10762        342 VLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDE  421 (501)
T ss_pred             cCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcC
Confidence            0                         000112356788999995 67899999999999983      36788887   9


Q ss_pred             cccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          127 QLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       127 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      |+...|+..+..+..++..+..+ ..+++++|||++++.+.||++++++
T Consensus       422 Pt~~LD~~~~~~l~~~l~~~~~~-g~tviivtHd~~~~~~~~d~v~~l~  469 (501)
T PRK10762        422 PTRGVDVGAKKEIYQLINQFKAE-GLSIILVSSEMPEVLGMSDRILVMH  469 (501)
T ss_pred             CCCCCCHhHHHHHHHHHHHHHHC-CCEEEEEcCCHHHHHhhCCEEEEEE
Confidence            99999999999999999988665 7899999999999999999999996

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=2.3e-27  Score=194.40  Aligned_cols=169  Identities=11%  Similarity=0.029  Sum_probs=127.4

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCC----CCCcEEEEEecCccccccccchheeehhhhccCCCCc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFS----DMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK   79 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~----p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~   79 (183)
                      .++|++  |+|++||++||+|+||||||||+++|+|+++    |++|+|.++|+++...... .........+++++|..
T Consensus        20 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~-~~~~~r~~~i~~v~Q~~   98 (326)
T PRK11022         20 FRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEK-ERRNLVGAEVAMIFQDP   98 (326)
T ss_pred             EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHH-HHHHHhCCCEEEEecCc
Confidence            357885  5699999999999999999999999999997    4899999999876431000 00000001233333321


Q ss_pred             c--ccc--------------------cccchHHHHHHHHcCCCC---ccCCCCCCCChhhhhe------ecCchhhc---
Q 036195           80 S--ICH--------------------EALAFPCLERIYVHGCPS---LRKLPFSLESGKRNGV------LIGEEEWW---  125 (183)
Q Consensus        80 ~--l~~--------------------~~~~~~~l~vLe~l~L~~---L~~~~~~~LSgGqk~~------i~~~~~w~---  125 (183)
                      .  +..                    ......+.++++.+++..   ..+.++++|||||+|+      ++.+|+.+   
T Consensus        99 ~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilD  178 (326)
T PRK11022         99 MTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIAD  178 (326)
T ss_pred             hhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence            0  110                    001123567889999964   5678899999999983      47889987   


Q ss_pred             ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          126 NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       126 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ||....|+.++..+..++..+..+...+++++|||++.+.+.||||++++
T Consensus       179 EPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~  228 (326)
T PRK11022        179 EPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMY  228 (326)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence            89999999999999999999887778999999999999999999999986

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=99.93  E-value=3.5e-27  Score=193.64  Aligned_cols=169  Identities=10%  Similarity=-0.031  Sum_probs=126.4

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCC---CcEEEEEecCccccccccchheeehhhhccCCCCc-
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDM---SHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK-   79 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~---~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~-   79 (183)
                      .+++++  |+|.+||++||+|+||||||||+++|+|+++|+   +|+|.++|.++..... ..........+++++|.. 
T Consensus        29 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~-~~~~~~r~~~i~~v~Q~~~  107 (330)
T PRK09473         29 VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPE-KELNKLRAEQISMIFQDPM  107 (330)
T ss_pred             EEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCH-HHHHHHhcCCEEEEEcCch
Confidence            357774  569999999999999999999999999999996   9999999987643100 000000001233333321 


Q ss_pred             -cccc----------------c----ccchHHHHHHHHcCCCC---ccCCCCCCCChhhhhe------ecCchhhc---c
Q 036195           80 -SICH----------------E----ALAFPCLERIYVHGCPS---LRKLPFSLESGKRNGV------LIGEEEWW---N  126 (183)
Q Consensus        80 -~l~~----------------~----~~~~~~l~vLe~l~L~~---L~~~~~~~LSgGqk~~------i~~~~~w~---~  126 (183)
                       .+..                .    .....+.++++.++++.   ..+.++.+|||||+|+      ++.+|+++   |
T Consensus       108 ~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDE  187 (330)
T PRK09473        108 TSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADE  187 (330)
T ss_pred             hhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence             0100                0    00123466788888874   3467889999999983      48899987   8


Q ss_pred             cccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          127 QLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       127 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      |....|..++..+..++..+..+...+++++|||++.+.+.||+++.+.
T Consensus       188 Pts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~  236 (330)
T PRK09473        188 PTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMY  236 (330)
T ss_pred             CCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEE
Confidence            9999999999999999998887778999999999999999999999985

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=99.93  E-value=3.4e-27  Score=193.83  Aligned_cols=169  Identities=10%  Similarity=-0.041  Sum_probs=126.0

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCC----CCCcEEEEEecCccccccccchheeehhhhccCCCCc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFS----DMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK   79 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~----p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~   79 (183)
                      .+++++  |+|.+||++||+|+||||||||+++|+|+++    |++|+|.|+|+++...... .........+++++|..
T Consensus        20 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~-~~~~~~~~~i~~v~Q~~   98 (330)
T PRK15093         20 VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR-ERRKLVGHNVSMIFQEP   98 (330)
T ss_pred             EEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH-HHHHHhCCCEEEEecCc
Confidence            357875  5699999999999999999999999999996    5899999999876431000 00000001122222211


Q ss_pred             c--cc-----------------------cc--ccchHHHHHHHHcCCCC---ccCCCCCCCChhhhhe------ecCchh
Q 036195           80 S--IC-----------------------HE--ALAFPCLERIYVHGCPS---LRKLPFSLESGKRNGV------LIGEEE  123 (183)
Q Consensus        80 ~--l~-----------------------~~--~~~~~~l~vLe~l~L~~---L~~~~~~~LSgGqk~~------i~~~~~  123 (183)
                      .  +.                       ..  .....+.++++.+++..   ..+.++.+|||||+|+      ++.+|+
T Consensus        99 ~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~  178 (330)
T PRK15093         99 QSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPR  178 (330)
T ss_pred             chhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCC
Confidence            0  00                       00  01124567899999974   4578899999999983      478888


Q ss_pred             hc---ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          124 WW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       124 w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      .+   ||+...|+.++..+..++..+..+...+++++|||++.+.+.||+++.++
T Consensus       179 llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~  233 (330)
T PRK15093        179 LLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLY  233 (330)
T ss_pred             EEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEE
Confidence            87   89999999999999999999877778999999999999999999999985

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=99.93  E-value=5.3e-27  Score=183.00  Aligned_cols=161  Identities=12%  Similarity=0.026  Sum_probs=118.7

Q ss_pred             cccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc-
Q 036195            7 PHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH-   83 (183)
Q Consensus         7 ~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~-   83 (183)
                      ++|+++  ++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....    . .....++++++...++. 
T Consensus        28 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~----~-~~~~~i~~~~q~~~l~~~  102 (226)
T cd03248          28 LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEH----K-YLHSKVSLVGQEPVLFAR  102 (226)
T ss_pred             ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCH----H-HHHhhEEEEecccHHHhh
Confidence            578755  589999999999999999999999999999999999999986542100    0 00011222222211110 


Q ss_pred             -----------cccc---------hHHHHHHHHc--CCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccC
Q 036195           84 -----------EALA---------FPCLERIYVH--GCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDD  132 (183)
Q Consensus        84 -----------~~~~---------~~~l~vLe~l--~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d  132 (183)
                                 ....         ....+.++.+  ++....+.++.+||+||+|+      +..+|+++   ||+.+.|
T Consensus       103 tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD  182 (226)
T cd03248         103 SLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALD  182 (226)
T ss_pred             hHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence                       0000         0123456666  67777888899999999983      47888887   9999999


Q ss_pred             cccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          133 EATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+..+..++..+..  ..+++++|||++++. .||+++.++
T Consensus       183 ~~~~~~l~~~l~~~~~--~~tii~~sh~~~~~~-~~d~i~~l~  222 (226)
T cd03248         183 AESEQQVQQALYDWPE--RRTVLVIAHRLSTVE-RADQILVLD  222 (226)
T ss_pred             HHHHHHHHHHHHHHcC--CCEEEEEECCHHHHH-hCCEEEEec
Confidence            9999999999987754  379999999999986 599999986

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=99.93  E-value=8.4e-27  Score=173.71  Aligned_cols=167  Identities=14%  Similarity=0.060  Sum_probs=128.3

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc----
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK----   79 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~----   79 (183)
                      +++|++  |+|++||++-|+||||||||||||+|.+..+|++|+|+++|.++...... ..|.++ ..+|.+.|..    
T Consensus        15 ~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~-~iP~LR-R~IGvVFQD~rLL~   92 (223)
T COG2884          15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGR-EIPFLR-RQIGVVFQDFRLLP   92 (223)
T ss_pred             chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeeccccccc-ccchhh-heeeeEeeeccccc
Confidence            457764  56899999999999999999999999999999999999999988653111 011111 1222222211    


Q ss_pred             --ccccc-------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195           80 --SICHE-------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT  135 (183)
Q Consensus        80 --~l~~~-------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~  135 (183)
                        .++.+             ....++.++++.+|+.+..+.-+.+|||||+|+      |..+|+.+   ||..-.||+.
T Consensus        93 ~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~  172 (223)
T COG2884          93 DRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDL  172 (223)
T ss_pred             cchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHH
Confidence              11111             111246889999999999999999999999883      57888887   7888888888


Q ss_pred             ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      -..+..+|..+... ..+|+|.+||.+.|-+...|++.|+
T Consensus       173 s~~im~lfeeinr~-GtTVl~ATHd~~lv~~~~~rvl~l~  211 (223)
T COG2884         173 SWEIMRLFEEINRL-GTTVLMATHDLELVNRMRHRVLALE  211 (223)
T ss_pred             HHHHHHHHHHHhhc-CcEEEEEeccHHHHHhccCcEEEEe
Confidence            88888888877766 9999999999999999999999987

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=99.93  E-value=1e-26  Score=184.83  Aligned_cols=167  Identities=11%  Similarity=-0.001  Sum_probs=120.9

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCC-----CCcEEEEEecCccccccccchheeehhhhccCCCC
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSD-----MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNL   78 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p-----~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l   78 (183)
                      +++|++  |++++||+++|+||||||||||+++|+|+.+|     ++|+|.++|.++.....  .... ....++++++.
T Consensus        17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~--~~~~-~~~~i~~~~q~   93 (258)
T PRK14241         17 FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGV--DPVA-VRRTIGMVFQR   93 (258)
T ss_pred             EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEecccccc--ChHH-HhcceEEEccc
Confidence            357875  56899999999999999999999999999974     79999999987631000  0000 00112222222


Q ss_pred             cccccc--------------------ccchHHHHHHHHcCCC----CccCCCCCCCChhhhhe------ecCchhhc---
Q 036195           79 KSICHE--------------------ALAFPCLERIYVHGCP----SLRKLPFSLESGKRNGV------LIGEEEWW---  125 (183)
Q Consensus        79 ~~l~~~--------------------~~~~~~l~vLe~l~L~----~L~~~~~~~LSgGqk~~------i~~~~~w~---  125 (183)
                      ..++..                    .......++++.+++.    ...+.++.+||+||+|+      +..+|+.+   
T Consensus        94 ~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD  173 (258)
T PRK14241         94 PNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMD  173 (258)
T ss_pred             cccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            111110                    0011234567777773    46678899999999983      36788887   


Q ss_pred             ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEeeC
Q 036195          126 NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICIDVD  177 (183)
Q Consensus       126 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (183)
                      ||....|+.++..+..++..+..  ..+++++||+++.+...||++++++-+
T Consensus       174 EPt~~LD~~~~~~l~~~l~~~~~--~~tviivsH~~~~~~~~~d~i~~l~~~  223 (258)
T PRK14241        174 EPCSALDPISTLAIEDLINELKQ--DYTIVIVTHNMQQAARVSDQTAFFNLE  223 (258)
T ss_pred             CCCccCCHHHHHHHHHHHHHHhc--CCEEEEEecCHHHHHHhCCEEEEEecc
Confidence            89999999999999999988753  378999999999999999999999743

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=99.93  E-value=1.2e-26  Score=181.79  Aligned_cols=161  Identities=14%  Similarity=0.094  Sum_probs=117.0

Q ss_pred             ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195            7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE   84 (183)
Q Consensus         7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~   84 (183)
                      +++++  |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++....    .... ...++++++...++..
T Consensus        16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~----~~~~-~~~i~~~~q~~~~~~~   90 (234)
T cd03251          16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYT----LASL-RRQIGLVSQDVFLFND   90 (234)
T ss_pred             cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCC----HHHH-HhhEEEeCCCCeeccc
Confidence            67875  568999999999999999999999999999999999999997654210    0000 1123333332211110


Q ss_pred             ------------ccchHH---------HHHHHHc--CCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccC
Q 036195           85 ------------ALAFPC---------LERIYVH--GCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDD  132 (183)
Q Consensus        85 ------------~~~~~~---------l~vLe~l--~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d  132 (183)
                                  ......         .+.++.+  ++....+.++.+||+||+|+      ++.+|+++   ||+.+-|
T Consensus        91 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD  170 (234)
T cd03251          91 TVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALD  170 (234)
T ss_pred             cHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence                        000111         2223333  45566778899999999983      47788887   9999999


Q ss_pred             cccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          133 EATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+..+...+..+. + ..+|+++|||++.+.. ||+++.|+
T Consensus       171 ~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~~-~d~v~~l~  210 (234)
T cd03251         171 TESERLVQAALERLM-K-NRTTFVIAHRLSTIEN-ADRIVVLE  210 (234)
T ss_pred             HHHHHHHHHHHHHhc-C-CCEEEEEecCHHHHhh-CCEEEEec
Confidence            999999999998775 3 5789999999999865 99999985

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.93  E-value=5.1e-27  Score=202.42  Aligned_cols=165  Identities=13%  Similarity=0.030  Sum_probs=125.7

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccc-
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSIC-   82 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~-   82 (183)
                      +++|++  |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....    .......++++++...++ 
T Consensus        17 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~----~~~~~~~i~~v~q~~~~~~   92 (501)
T PRK11288         17 VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFAST----TAALAAGVAIIYQELHLVP   92 (501)
T ss_pred             EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCH----HHHHhCCEEEEEechhccC
Confidence            357875  5699999999999999999999999999999999999999977532100    000001122222211000 


Q ss_pred             ---------------------ccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccC
Q 036195           83 ---------------------HEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDD  132 (183)
Q Consensus        83 ---------------------~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d  132 (183)
                                           .........++++.+++....++++.+|||||+|+      +..+|+.+   ||....|
T Consensus        93 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD  172 (501)
T PRK11288         93 EMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLS  172 (501)
T ss_pred             CCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCC
Confidence                                 00111245678899999888899999999999983      37788887   9999999


Q ss_pred             cccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          133 EATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+..+..++..+..+ ..+|+++|||++.+.+.||+++.++
T Consensus       173 ~~~~~~l~~~l~~~~~~-g~tiiiitHd~~~~~~~~d~i~~l~  214 (501)
T PRK11288        173 AREIEQLFRVIRELRAE-GRVILYVSHRMEEIFALCDAITVFK  214 (501)
T ss_pred             HHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEE
Confidence            99999999999887654 7899999999999999999999997

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=99.93  E-value=5.2e-27  Score=186.58  Aligned_cols=169  Identities=11%  Similarity=-0.012  Sum_probs=125.2

Q ss_pred             ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecC-----ccccccccchheeehhhhccCCCC
Q 036195            6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVS-----LQKKISVCSFILIRRAYFFKLPNL   78 (183)
Q Consensus         6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~-----~~~~~~~~~~~~l~~~~lg~lp~l   78 (183)
                      +++|+  ||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+     +..... ..........++++++.
T Consensus        19 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~-~~~~~~~~~~i~~v~q~   97 (258)
T PRK11701         19 RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSE-AERRRLLRTEWGFVHQH   97 (258)
T ss_pred             ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCH-HHHHHHhhcceEEEeeC
Confidence            36777  55699999999999999999999999999999999999999986     432100 00000000123333322


Q ss_pred             cc--cc----------------c----cccchHHHHHHHHcCCC-CccCCCCCCCChhhhhe------ecCchhhc---c
Q 036195           79 KS--IC----------------H----EALAFPCLERIYVHGCP-SLRKLPFSLESGKRNGV------LIGEEEWW---N  126 (183)
Q Consensus        79 ~~--l~----------------~----~~~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~------i~~~~~w~---~  126 (183)
                      ..  ++                .    ........++++.+++. ...+.++.+||+||+|+      +..+|+.+   |
T Consensus        98 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDE  177 (258)
T PRK11701         98 PRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDE  177 (258)
T ss_pred             cccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            10  00                0    00012345778889986 47788999999999983      36778876   8


Q ss_pred             cccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          127 QLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       127 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      |....|+..+..+..++..+..+...+++++|||++.+...||++++++
T Consensus       178 Pt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~  226 (258)
T PRK11701        178 PTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMK  226 (258)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEE
Confidence            9999999999999999887766657899999999999999999999996

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=99.93  E-value=1.1e-26  Score=181.29  Aligned_cols=161  Identities=10%  Similarity=-0.001  Sum_probs=122.1

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCC---CCCcEEEEEecCccccccccchheeehhhhccCCCCcc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFS---DMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKS   80 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~---p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~   80 (183)
                      ++++++  |++++||+++|+||||||||||+++|+|+++   |++|+|.++|.++....        ....++++++...
T Consensus        20 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~--------~~~~i~~~~q~~~   91 (226)
T cd03234          20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQ--------FQKCVAYVRQDDI   91 (226)
T ss_pred             cccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHH--------hcccEEEeCCCCc
Confidence            567874  5699999999999999999999999999999   99999999997653210        0011222222211


Q ss_pred             cccc-------------------c---cchHHHH-HHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccc
Q 036195           81 ICHE-------------------A---LAFPCLE-RIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQL  128 (183)
Q Consensus        81 l~~~-------------------~---~~~~~l~-vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l  128 (183)
                      ++..                   .   ......+ .++.+++..+.+.++.+||+||+|+      ++.+|+.+   ||.
T Consensus        92 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~  171 (226)
T cd03234          92 LLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPT  171 (226)
T ss_pred             cCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence            1110                   0   0011233 6788888888889999999999983      36677776   899


Q ss_pred             cccCcccccccccceeecCcccccCCCCCCceee-eeecccceEEEEe
Q 036195          129 EWDDEATKHVFSSKLIITTPQTVISIPQPSYTYE-ATIRPRYELICID  175 (183)
Q Consensus       129 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  175 (183)
                      ...|+.++..+..++.....+ ..+++++||+++ .+.+.||++++++
T Consensus       172 ~gLD~~~~~~~~~~l~~~~~~-~~tiii~sh~~~~~~~~~~d~i~~l~  218 (226)
T cd03234         172 SGLDSFTALNLVSTLSQLARR-NRIVILTIHQPRSDLFRLFDRILLLS  218 (226)
T ss_pred             cCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHhCCEEEEEe
Confidence            999999999999999877554 789999999995 8999999999997

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=99.93  E-value=8.3e-27  Score=183.09  Aligned_cols=162  Identities=14%  Similarity=0.062  Sum_probs=115.9

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      ++++++  |++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++.....    .. ....++++++...++.
T Consensus        15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~----~~-~~~~i~~~~q~~~~~~   89 (237)
T cd03252          15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADP----AW-LRRQVGVVLQENVLFN   89 (237)
T ss_pred             ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCH----HH-HhhcEEEEcCCchhcc
Confidence            457875  4589999999999999999999999999999999999999986542100    00 0011233333221111


Q ss_pred             ------------cccchHHHHH---------HHHc--CCCCccCCCCCCCChhhhhe------ecCchhhc---cccccc
Q 036195           84 ------------EALAFPCLER---------IYVH--GCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWD  131 (183)
Q Consensus        84 ------------~~~~~~~l~v---------Le~l--~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~  131 (183)
                                  ........+.         ++.+  ++....+.++.+|||||+|+      +..+|+.+   ||..+.
T Consensus        90 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~L  169 (237)
T cd03252          90 RSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSAL  169 (237)
T ss_pred             chHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccC
Confidence                        0001111222         2222  34445567889999999983      47788887   999999


Q ss_pred             CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      |+..+..+...+..+. + ..+++++|||++++. .||+++.++
T Consensus       170 D~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~-~~d~v~~l~  210 (237)
T cd03252         170 DYESEHAIMRNMHDIC-A-GRTVIIIAHRLSTVK-NADRIIVME  210 (237)
T ss_pred             CHHHHHHHHHHHHHhc-C-CCEEEEEeCCHHHHH-hCCEEEEEE
Confidence            9999999999998875 4 688999999999984 699999986

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.93  E-value=1.3e-26  Score=199.33  Aligned_cols=165  Identities=10%  Similarity=0.059  Sum_probs=124.0

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc----
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK----   79 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~----   79 (183)
                      +++|++  |++++||++||+||||||||||+++|+|+.+|++|+|.++|.++.....    .......++++++..    
T Consensus       261 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~----~~~~~~~i~~~~q~~~~~~  336 (491)
T PRK10982        261 QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNA----NEAINHGFALVTEERRSTG  336 (491)
T ss_pred             CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCH----HHHHHCCCEEcCCchhhCC
Confidence            457875  5699999999999999999999999999999999999999977643100    000000122222210    


Q ss_pred             -----------------cc------cc-cccchHHHHHHHHcCCC-CccCCCCCCCChhhhhe------ecCchhhc---
Q 036195           80 -----------------SI------CH-EALAFPCLERIYVHGCP-SLRKLPFSLESGKRNGV------LIGEEEWW---  125 (183)
Q Consensus        80 -----------------~l------~~-~~~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~------i~~~~~w~---  125 (183)
                                       ..      .. ........++++.+++. ...++++.+|||||+|+      ++.+|+.+   
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLD  416 (491)
T PRK10982        337 IYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLD  416 (491)
T ss_pred             cccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEc
Confidence                             00      00 00011245678888885 56799999999999983      36788876   


Q ss_pred             ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          126 NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       126 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ||....|+..+..+..++..+..+ ..+|+|+|||++++.+.|||++.++
T Consensus       417 EPt~gLD~~~~~~~~~~l~~l~~~-~~tvi~vsHd~~~~~~~~d~v~~l~  465 (491)
T PRK10982        417 EPTRGIDVGAKFEIYQLIAELAKK-DKGIIIISSEMPELLGITDRILVMS  465 (491)
T ss_pred             CCCcccChhHHHHHHHHHHHHHHC-CCEEEEECCChHHHHhhCCEEEEEE
Confidence            899999999999999999887665 7899999999999999999999995

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.93  E-value=9.6e-27  Score=200.69  Aligned_cols=164  Identities=15%  Similarity=0.075  Sum_probs=123.5

Q ss_pred             cccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc-----
Q 036195            7 PHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK-----   79 (183)
Q Consensus         7 ~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~-----   79 (183)
                      .+++  ||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++.....    .......++++++..     
T Consensus       267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~----~~~~~~~i~~~~q~~~~~~~  342 (501)
T PRK11288        267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSP----RDAIRAGIMLCPEDRKAEGI  342 (501)
T ss_pred             CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCH----HHHHhCCCEEcCcCHhhCCC
Confidence            4666  45699999999999999999999999999999999999999876532100    000000111111110     


Q ss_pred             ----------------c------cccc-ccchHHHHHHHHcCC-CCccCCCCCCCChhhhhe------ecCchhhc---c
Q 036195           80 ----------------S------ICHE-ALAFPCLERIYVHGC-PSLRKLPFSLESGKRNGV------LIGEEEWW---N  126 (183)
Q Consensus        80 ----------------~------l~~~-~~~~~~l~vLe~l~L-~~L~~~~~~~LSgGqk~~------i~~~~~w~---~  126 (183)
                                      .      +... .......++++.+++ ....++++.+|||||+|+      ++.+|+.+   |
T Consensus       343 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDE  422 (501)
T PRK11288        343 IPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDE  422 (501)
T ss_pred             cCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcC
Confidence                            0      0000 001235678889999 478899999999999983      36788886   9


Q ss_pred             cccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          127 QLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       127 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      |+...|+..+..+..++..+..+ ..+|+|+|||++++.+.||++++++
T Consensus       423 Pt~~LD~~~~~~l~~~l~~l~~~-g~tviivsHd~~~~~~~~d~i~~l~  470 (501)
T PRK11288        423 PTRGIDVGAKHEIYNVIYELAAQ-GVAVLFVSSDLPEVLGVADRIVVMR  470 (501)
T ss_pred             CCCCCCHhHHHHHHHHHHHHHhC-CCEEEEECCCHHHHHhhCCEEEEEE
Confidence            99999999999999999887655 7899999999999999999999996

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.93  E-value=7.8e-27  Score=186.98  Aligned_cols=170  Identities=15%  Similarity=0.114  Sum_probs=124.8

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCC--------CcEEEEEecCccccc--------cc------
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDM--------SHKFAIYAVSLQKKI--------SV------   61 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~--------~G~I~~~g~~~~~~~--------~~------   61 (183)
                      +++|++  |++++||+++|+||||||||||+++|+|+++|+        +|+|.++|.++....        .+      
T Consensus        14 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~   93 (272)
T PRK13547         14 RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQ   93 (272)
T ss_pred             EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCC
Confidence            467875  458999999999999999999999999999998        999999997654210        00      


Q ss_pred             --cchheeehhhhccCCCCc--cccccccchHHHHHHHHcCCCCccCCCCCCCChhhhhee------c---------Cch
Q 036195           62 --CSFILIRRAYFFKLPNLK--SICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGVL------I---------GEE  122 (183)
Q Consensus        62 --~~~~~l~~~~lg~lp~l~--~l~~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~i------~---------~~~  122 (183)
                        ...+..+.+.....+...  ............++++.+++..+.++++.+||+||+|++      +         .+|
T Consensus        94 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p  173 (272)
T PRK13547         94 PAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPP  173 (272)
T ss_pred             CCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCCCC
Confidence              000111111111000000  000000112356788899999888999999999999832      4         478


Q ss_pred             hhc---ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          123 EWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       123 ~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +.+   ||+...|+.++..+..++..+..+...+++++|||++.+.+.||+++.|+
T Consensus       174 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~  229 (272)
T PRK13547        174 RYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLA  229 (272)
T ss_pred             CEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEE
Confidence            887   89999999999999999998766657899999999999999999999996

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=99.93  E-value=1.1e-26  Score=180.48  Aligned_cols=161  Identities=14%  Similarity=0.094  Sum_probs=118.5

Q ss_pred             ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195            7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE   84 (183)
Q Consensus         7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~   84 (183)
                      +++++  |++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++....    .... ...++++++...++..
T Consensus        18 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~----~~~~-~~~i~~~~q~~~l~~~   92 (221)
T cd03244          18 PVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIG----LHDL-RSRISIIPQDPVLFSG   92 (221)
T ss_pred             ccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCC----HHHH-hhhEEEECCCCccccc
Confidence            68875  569999999999999999999999999999999999999998654210    0000 1123333333222210


Q ss_pred             -----------ccchHHHHHHHHcCCCCcc-----------CCCCCCCChhhhhe------ecCchhhc---ccccccCc
Q 036195           85 -----------ALAFPCLERIYVHGCPSLR-----------KLPFSLESGKRNGV------LIGEEEWW---NQLEWDDE  133 (183)
Q Consensus        85 -----------~~~~~~l~vLe~l~L~~L~-----------~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~  133 (183)
                                 .......++++.+++.+..           +.++..||+||+|+      ++.+|+++   ||....|+
T Consensus        93 tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~  172 (221)
T cd03244          93 TIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDP  172 (221)
T ss_pred             hHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCH
Confidence                       1112344555666654332           46789999999983      47888887   89999999


Q ss_pred             ccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          134 ATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ..+..+..++..+..  ..+++++||+++.+.. ||+++.|+
T Consensus       173 ~~~~~l~~~l~~~~~--~~tii~~sh~~~~~~~-~d~i~~l~  211 (221)
T cd03244         173 ETDALIQKTIREAFK--DCTVLTIAHRLDTIID-SDRILVLD  211 (221)
T ss_pred             HHHHHHHHHHHHhcC--CCEEEEEeCCHHHHhh-CCEEEEEE
Confidence            999999999987754  3789999999999875 99999996

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=99.93  E-value=1e-26  Score=184.05  Aligned_cols=162  Identities=18%  Similarity=0.102  Sum_probs=120.9

Q ss_pred             cccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccc--
Q 036195            7 PHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSIC--   82 (183)
Q Consensus         7 ~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~--   82 (183)
                      .+|+  ||++++||+++|+||||||||||+++|+|+.+ .+|+|.++|+++.....    ..+ ...++++++....+  
T Consensus        10 ~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~----~~~-~~~i~~v~q~~~~~~~   83 (248)
T PRK03695         10 TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSA----AEL-ARHRAYLSQQQTPPFA   83 (248)
T ss_pred             ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCH----HHH-hhheEEecccCccCCC
Confidence            3566  45699999999999999999999999999985 59999999987642100    000 00122222211000  


Q ss_pred             ----------------ccccchHHHHHHHHcCCCCccCCCCCCCChhhhhee------cC-------chhhc---ccccc
Q 036195           83 ----------------HEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGVL------IG-------EEEWW---NQLEW  130 (183)
Q Consensus        83 ----------------~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~i------~~-------~~~w~---~~l~~  130 (183)
                                      .........++++.+++....++++.+||+||+|++      ..       +|+.+   ||+..
T Consensus        84 ~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~  163 (248)
T PRK03695         84 MPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNS  163 (248)
T ss_pred             ccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCccc
Confidence                            000012356788999998888999999999999832      33       45776   89999


Q ss_pred             cCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          131 DDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       131 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      .|+..+..+..++..+..+ ..+++++|||++.+.+.||+++.++
T Consensus       164 LD~~~~~~l~~~L~~~~~~-~~tvi~~sH~~~~~~~~~d~i~~l~  207 (248)
T PRK03695        164 LDVAQQAALDRLLSELCQQ-GIAVVMSSHDLNHTLRHADRVWLLK  207 (248)
T ss_pred             CCHHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHHhCCEEEEEE
Confidence            9999999999999887655 7899999999999999999999986

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=7.2e-27  Score=187.63  Aligned_cols=163  Identities=10%  Similarity=0.058  Sum_probs=124.7

Q ss_pred             cccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc--ccc
Q 036195            7 PHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK--SIC   82 (183)
Q Consensus         7 ~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~--~l~   82 (183)
                      ++|+++  ++.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++....    .... ...++++++..  .++
T Consensus        21 ~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~----~~~~-~~~i~~v~q~~~~~~~   95 (277)
T PRK13642         21 NQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAEN----VWNL-RRKIGMVFQNPDNQFV   95 (277)
T ss_pred             eeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCC----HHHH-hcceEEEEECHHHhhc
Confidence            478755  68999999999999999999999999999999999999998764210    0000 01122222221  000


Q ss_pred             c--------------ccc----chHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195           83 H--------------EAL----AFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT  135 (183)
Q Consensus        83 ~--------------~~~----~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~  135 (183)
                      .              ...    ...+.++++.+++..+.+.++.+||+||+|+      ++.+|+.+   ||..+.|+..
T Consensus        96 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~  175 (277)
T PRK13642         96 GATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTG  175 (277)
T ss_pred             cCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence            0              000    1124677888999989999999999999983      47788876   8999999999


Q ss_pred             ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+...+..+..+...+|+++||+++.+. .||+++.++
T Consensus       176 ~~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d~i~~l~  214 (277)
T PRK13642        176 RQEIMRVIHEIKEKYQLTVLSITHDLDEAA-SSDRILVMK  214 (277)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEE
Confidence            999999998887666899999999999986 699999987

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.93  E-value=1.2e-26  Score=183.90  Aligned_cols=165  Identities=12%  Similarity=-0.007  Sum_probs=120.9

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCC-----CCcEEEEEecCccccccccchheeehhhhccCCCC
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSD-----MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNL   78 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p-----~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l   78 (183)
                      +++|++  |++.+||+++|+||||||||||+++|+|+++|     ++|+|.++|+++.....  ..... ...++++++.
T Consensus        17 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~--~~~~~-~~~i~~~~q~   93 (253)
T PRK14267         17 NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDV--DPIEV-RREVGMVFQY   93 (253)
T ss_pred             eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc--ChHHH-hhceeEEecC
Confidence            467875  45899999999999999999999999999987     49999999987641000  00000 0123333332


Q ss_pred             cccccc---------------------ccchHHHHHHHHcCCC----CccCCCCCCCChhhhhe------ecCchhhc--
Q 036195           79 KSICHE---------------------ALAFPCLERIYVHGCP----SLRKLPFSLESGKRNGV------LIGEEEWW--  125 (183)
Q Consensus        79 ~~l~~~---------------------~~~~~~l~vLe~l~L~----~L~~~~~~~LSgGqk~~------i~~~~~w~--  125 (183)
                      ..++..                     .......++++.+++.    ...+.++.+||+||+|+      +..+|+.+  
T Consensus        94 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llll  173 (253)
T PRK14267         94 PNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLM  173 (253)
T ss_pred             CccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            211110                     0011235567777763    35678899999999983      47788887  


Q ss_pred             -ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          126 -NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       126 -~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                       ||....|+..+..+..++..+..  ..+++++|||++.+.+.||++++++
T Consensus       174 DEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~  222 (253)
T PRK14267        174 DEPTANIDPVGTAKIEELLFELKK--EYTIVLVTHSPAQAARVSDYVAFLY  222 (253)
T ss_pred             cCCCccCCHHHHHHHHHHHHHHhh--CCEEEEEECCHHHHHhhCCEEEEEE
Confidence             89999999999999999988754  3799999999999999999999986

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.92  E-value=8.3e-27  Score=175.14  Aligned_cols=145  Identities=20%  Similarity=0.143  Sum_probs=113.0

Q ss_pred             ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195            7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE   84 (183)
Q Consensus         7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~   84 (183)
                      ++|++  |++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++...      +......++++++...++. 
T Consensus        14 ~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~------~~~~~~~i~~~~q~~~~~~-   86 (173)
T cd03230          14 TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKE------PEEVKRRIGYLPEEPSLYE-   86 (173)
T ss_pred             eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccc------hHhhhccEEEEecCCcccc-
Confidence            57774  56899999999999999999999999999999999999999866431      0001123445444433222 


Q ss_pred             ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCcccccCCC
Q 036195           85 ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIP  155 (183)
Q Consensus        85 ~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~  155 (183)
                           ..++.+++.           ||+||+|+      ++.+|+.+   ||....|+..+..+..++..+..+ ..+++
T Consensus        87 -----~~tv~~~~~-----------LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii  149 (173)
T cd03230          87 -----NLTVRENLK-----------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKE-GKTIL  149 (173)
T ss_pred             -----CCcHHHHhh-----------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-CCEEE
Confidence                 223333321           99999983      47788887   999999999999999999988666 68899


Q ss_pred             CCCceeeeeecccceEEEEe
Q 036195          156 QPSYTYEATIRPRYELICID  175 (183)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ++|||.+++...+|+++.++
T Consensus       150 i~th~~~~~~~~~d~i~~l~  169 (173)
T cd03230         150 LSSHILEEAERLCDRVAILN  169 (173)
T ss_pred             EECCCHHHHHHhCCEEEEEe
Confidence            99999999999999999986

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=1.2e-26  Score=183.25  Aligned_cols=162  Identities=15%  Similarity=0.047  Sum_probs=121.0

Q ss_pred             ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCC---CCCcEEEEEecCccccccccchheeehhhhccCCCCccc
Q 036195            7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFS---DMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSI   81 (183)
Q Consensus         7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~---p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l   81 (183)
                      ++|++  |++++||+++|+||||||||||+++|+|+++   |++|+|.++|+++.....    . .....++++++...+
T Consensus        16 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~----~-~~~~~i~~~~q~~~l   90 (246)
T PRK14269         16 QALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDV----V-ALRKNVGMVFQQPNV   90 (246)
T ss_pred             eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCH----H-HHhhhEEEEecCCcc
Confidence            57875  5689999999999999999999999999974   799999999987643100    0 000122333332211


Q ss_pred             cc-----c---------------ccchHHHHHHHHcCCC----CccCCCCCCCChhhhhe------ecCchhhc---ccc
Q 036195           82 CH-----E---------------ALAFPCLERIYVHGCP----SLRKLPFSLESGKRNGV------LIGEEEWW---NQL  128 (183)
Q Consensus        82 ~~-----~---------------~~~~~~l~vLe~l~L~----~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l  128 (183)
                      +.     +               .......++++.+++.    .+.+.++.+||+||+|+      ++.+|+.+   ||+
T Consensus        91 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~  170 (246)
T PRK14269         91 FVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPT  170 (246)
T ss_pred             ccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence            10     0               0011245678888884    45678899999999983      36777776   899


Q ss_pred             cccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          129 EWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       129 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ...|+..+..+...+..+..  ..+++++||+++.+.+.||++++|+
T Consensus       171 ~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~~~~~~~~d~i~~l~  215 (246)
T PRK14269        171 SALDPISSGVIEELLKELSH--NLSMIMVTHNMQQGKRVADYTAFFH  215 (246)
T ss_pred             ccCCHHHHHHHHHHHHHHhC--CCEEEEEecCHHHHHhhCcEEEEEE
Confidence            99999999999999887753  6789999999999999999999996

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.92  E-value=5.1e-27  Score=180.95  Aligned_cols=161  Identities=13%  Similarity=0.083  Sum_probs=136.6

Q ss_pred             cccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccc
Q 036195            5 YRPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSIC   82 (183)
Q Consensus         5 ~~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~   82 (183)
                      ++.+++  ||+|++|+++|++|||||||||++|+|.|++.|++|+|.++|.++...         ....+||+|.-+.++
T Consensus        14 ~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~---------~~~rIGyLPEERGLy   84 (300)
T COG4152          14 DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQE---------IKNRIGYLPEERGLY   84 (300)
T ss_pred             ceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhh---------hhhhcccChhhhccC
Confidence            345666  556999999999999999999999999999999999999999977542         235689999988888


Q ss_pred             ccccch-------------------HHHHHHHHcCCCCccCCCCCCCChhhhh------eecCchhhc---ccccccCcc
Q 036195           83 HEALAF-------------------PCLERIYVHGCPSLRKLPFSLESGKRNG------VLIGEEEWW---NQLEWDDEA  134 (183)
Q Consensus        83 ~~~~~~-------------------~~l~vLe~l~L~~L~~~~~~~LSgGqk~------~i~~~~~w~---~~l~~~d~~  134 (183)
                      +.....                   ....+|+.+++....+.++.+||-|++|      .+.-+|++.   ||+++-||-
T Consensus        85 ~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPV  164 (300)
T COG4152          85 PKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPV  164 (300)
T ss_pred             ccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChh
Confidence            754321                   2456789999999999999999999776      347799996   899999998


Q ss_pred             cccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          135 TKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ....+...+..++.. ..+|+..||.++-|-..||++..++
T Consensus       165 N~elLk~~I~~lk~~-GatIifSsH~Me~vEeLCD~llmL~  204 (300)
T COG4152         165 NVELLKDAIFELKEE-GATIIFSSHRMEHVEELCDRLLMLK  204 (300)
T ss_pred             hHHHHHHHHHHHHhc-CCEEEEecchHHHHHHHhhhhheec
Confidence            888888888877777 9999999999999999999998875

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=1.7e-26  Score=199.42  Aligned_cols=165  Identities=13%  Similarity=0.074  Sum_probs=124.8

Q ss_pred             ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCC-CCCcEEEEEecCccccccccchheeehhhhccCCCCc---
Q 036195            6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFS-DMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK---   79 (183)
Q Consensus         6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~-p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~---   79 (183)
                      +++++  ||++++||++||+||||||||||+|+|+|+++ |++|+|.++|+++.....    .......++++++..   
T Consensus       275 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~----~~~~~~~i~~v~q~~~~~  350 (506)
T PRK13549        275 IKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNP----QQAIAQGIAMVPEDRKRD  350 (506)
T ss_pred             cccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCH----HHHHHCCCEEeCcchhhC
Confidence            35787  55799999999999999999999999999998 599999999876532100    000000122222210   


Q ss_pred             ------------------ccc-----c-cccchHHHHHHHHcCCC-CccCCCCCCCChhhhhe------ecCchhhc---
Q 036195           80 ------------------SIC-----H-EALAFPCLERIYVHGCP-SLRKLPFSLESGKRNGV------LIGEEEWW---  125 (183)
Q Consensus        80 ------------------~l~-----~-~~~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~------i~~~~~w~---  125 (183)
                                        .+.     . ........++++.+++. ...++++.+|||||+|+      ++.+|+.+   
T Consensus       351 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLD  430 (506)
T PRK13549        351 GIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILD  430 (506)
T ss_pred             CCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEc
Confidence                              000     0 00112356788999996 57899999999999983      37788887   


Q ss_pred             ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          126 NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       126 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ||+...|+..+..+..++..+..+ ..+|+++|||++++.+.|||+++++
T Consensus       431 EPt~~LD~~~~~~l~~~l~~l~~~-g~tvi~~sHd~~~~~~~~d~v~~l~  479 (506)
T PRK13549        431 EPTRGIDVGAKYEIYKLINQLVQQ-GVAIIVISSELPEVLGLSDRVLVMH  479 (506)
T ss_pred             CCCCCcCHhHHHHHHHHHHHHHHC-CCEEEEECCCHHHHHHhCCEEEEEE
Confidence            999999999999999999988755 7899999999999999999999986

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=99.92  E-value=1.2e-26  Score=180.79  Aligned_cols=167  Identities=17%  Similarity=0.142  Sum_probs=120.8

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEe--c--CccccccccchheeehhhhccCCCCc
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYA--V--SLQKKISVCSFILIRRAYFFKLPNLK   79 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g--~--~~~~~~~~~~~~~l~~~~lg~lp~l~   79 (183)
                      +++++++  ++.+||+++|+||||||||||+++|+|+++|++|+|.+++  .  ++..... ..........++++++..
T Consensus        21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~-~~~~~~~~~~i~~~~q~~   99 (224)
T TIGR02324        21 LPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP-REVLEVRRKTIGYVSQFL   99 (224)
T ss_pred             eEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH-HHHHHHHhcceEEEeccc
Confidence            3678755  5899999999999999999999999999999999999984  2  3321000 000000001123333322


Q ss_pred             ccccc-------------------ccchHHHHHHHHcCCCC-ccCCCCCCCChhhhhe------ecCchhhc---ccccc
Q 036195           80 SICHE-------------------ALAFPCLERIYVHGCPS-LRKLPFSLESGKRNGV------LIGEEEWW---NQLEW  130 (183)
Q Consensus        80 ~l~~~-------------------~~~~~~l~vLe~l~L~~-L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~  130 (183)
                      .++..                   .......++++.+++.. +.++++.+||+||+|+      +..+|+.+   ||...
T Consensus       100 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~  179 (224)
T TIGR02324       100 RVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTAS  179 (224)
T ss_pred             ccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence            11110                   01123456788889876 5678999999999983      47788887   89999


Q ss_pred             cCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEE
Q 036195          131 DDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICI  174 (183)
Q Consensus       131 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (183)
                      .|+..+..+...+..+..+ ..+++++||+.+.+...||+++-+
T Consensus       180 LD~~~~~~l~~~l~~~~~~-g~tii~vsH~~~~~~~~~d~i~~~  222 (224)
T TIGR02324       180 LDAANRQVVVELIAEAKAR-GAALIGIFHDEEVRELVADRVMDV  222 (224)
T ss_pred             CCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcceeEec
Confidence            9999999999999887655 789999999999999999998765

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=99.92  E-value=1e-26  Score=181.70  Aligned_cols=161  Identities=12%  Similarity=0.064  Sum_probs=116.0

Q ss_pred             ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195            7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE   84 (183)
Q Consensus         7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~   84 (183)
                      +++++  |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++....    ... ....++++++...++..
T Consensus        17 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~----~~~-~~~~i~~~~q~~~~~~~   91 (229)
T cd03254          17 PVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDIS----RKS-LRSMIGVVLQDTFLFSG   91 (229)
T ss_pred             ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcC----HHH-HhhhEEEecCCchhhhh
Confidence            57875  458999999999999999999999999999999999999997654210    000 01123333333222110


Q ss_pred             ------------ccchHHHHHHHHcC-----------CCCccCCCCCCCChhhhhe------ecCchhhc---ccccccC
Q 036195           85 ------------ALAFPCLERIYVHG-----------CPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDD  132 (183)
Q Consensus        85 ------------~~~~~~l~vLe~l~-----------L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d  132 (183)
                                  .......++++.++           +....+.++.+||+||+|+      +..+|+++   ||+.+.|
T Consensus        92 tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD  171 (229)
T cd03254          92 TIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNID  171 (229)
T ss_pred             HHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence                        01112223333333           3334456679999999983      48888887   9999999


Q ss_pred             cccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          133 EATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+..+..++..+. + ..+++++||+++.+. .||++++++
T Consensus       172 ~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~-~~d~i~~l~  211 (229)
T cd03254         172 TETEKLIQEALEKLM-K-GRTSIIIAHRLSTIK-NADKILVLD  211 (229)
T ss_pred             HHHHHHHHHHHHHhc-C-CCEEEEEecCHHHHh-hCCEEEEEe
Confidence            999999999998774 4 689999999999975 599999995

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=99.92  E-value=2.1e-26  Score=180.89  Aligned_cols=162  Identities=15%  Similarity=0.082  Sum_probs=116.1

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      ++++++  |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....    ... ...++++++...++.
T Consensus        16 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~----~~~-~~~i~~~~q~~~~~~   90 (238)
T cd03249          16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNL----RWL-RSQIGLVSQEPVLFD   90 (238)
T ss_pred             ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCH----HHH-HhhEEEECCchhhhh
Confidence            358875  6689999999999999999999999999999999999999976542100    000 011233333221111


Q ss_pred             ------------cccchHHHHHHHHc-----------CCCCccCCCCCCCChhhhhe------ecCchhhc---cccccc
Q 036195           84 ------------EALAFPCLERIYVH-----------GCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWD  131 (183)
Q Consensus        84 ------------~~~~~~~l~vLe~l-----------~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~  131 (183)
                                  ........+.++..           ++....+.++.+||+||+|+      ++.+|+.+   ||+.+.
T Consensus        91 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gL  170 (238)
T cd03249          91 GTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSAL  170 (238)
T ss_pred             hhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccC
Confidence                        00001111222222           33445667789999999983      47788887   999999


Q ss_pred             CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      |+..+..+..++.... + .++++++||+++++. .||+++.++
T Consensus       171 D~~~~~~l~~~l~~~~-~-g~~vi~~sh~~~~~~-~~d~v~~l~  211 (238)
T cd03249         171 DAESEKLVQEALDRAM-K-GRTTIVIAHRLSTIR-NADLIAVLQ  211 (238)
T ss_pred             CHHHHHHHHHHHHHhc-C-CCEEEEEeCCHHHHh-hCCEEEEEE
Confidence            9999999999998876 4 788999999999986 899999985

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.92  E-value=1.2e-26  Score=200.00  Aligned_cols=165  Identities=16%  Similarity=0.128  Sum_probs=124.1

Q ss_pred             ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCC-CCcEEEEEecCccccccccchheeehhhhccCCCCc---
Q 036195            6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSD-MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK---   79 (183)
Q Consensus         6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p-~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~---   79 (183)
                      +++++  ||++.+||++||+||||||||||+|+|+|+++| ++|+|.++|+++.....    .......++++++..   
T Consensus       273 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~----~~~~~~~i~~v~q~~~~~  348 (500)
T TIGR02633       273 RKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNP----AQAIRAGIAMVPEDRKRH  348 (500)
T ss_pred             ccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCH----HHHHhCCCEEcCcchhhC
Confidence            35787  556999999999999999999999999999995 89999999976632100    000001122222210   


Q ss_pred             ------------------cccc------cccchHHHHHHHHcCCCC-ccCCCCCCCChhhhhe------ecCchhhc---
Q 036195           80 ------------------SICH------EALAFPCLERIYVHGCPS-LRKLPFSLESGKRNGV------LIGEEEWW---  125 (183)
Q Consensus        80 ------------------~l~~------~~~~~~~l~vLe~l~L~~-L~~~~~~~LSgGqk~~------i~~~~~w~---  125 (183)
                                        ....      ......+.++++.+++.. ..++++.+|||||+|+      ++.+|+.+   
T Consensus       349 ~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLD  428 (500)
T TIGR02633       349 GIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILD  428 (500)
T ss_pred             CcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEc
Confidence                              0000      000123567889999964 6789999999999983      36688887   


Q ss_pred             ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          126 NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       126 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ||....|+..+..+..++..+..+ ..+|+++|||++++.+.||++++++
T Consensus       429 EPt~~LD~~~~~~l~~~l~~l~~~-g~tviivsHd~~~~~~~~d~v~~l~  477 (500)
T TIGR02633       429 EPTRGVDVGAKYEIYKLINQLAQE-GVAIIVVSSELAEVLGLSDRVLVIG  477 (500)
T ss_pred             CCCCCcCHhHHHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEEE
Confidence            999999999999999999888665 7889999999999999999999996

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=99.92  E-value=1.4e-26  Score=183.45  Aligned_cols=168  Identities=12%  Similarity=-0.023  Sum_probs=123.7

Q ss_pred             cccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecC-----ccccccccchheeehhhhccCCCCc
Q 036195            7 PHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVS-----LQKKISVCSFILIRRAYFFKLPNLK   79 (183)
Q Consensus         7 ~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~-----~~~~~~~~~~~~l~~~~lg~lp~l~   79 (183)
                      ++|+  ||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+     +..... ..........++++++..
T Consensus        17 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~-~~~~~~~~~~i~~~~q~~   95 (253)
T TIGR02323        17 KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSE-AERRRLMRTEWGFVHQNP   95 (253)
T ss_pred             eEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCH-HHHHHhhhcceEEEEeCc
Confidence            5677  45689999999999999999999999999999999999999875     321100 000000000122222211


Q ss_pred             c------------c------cc----cccchHHHHHHHHcCCC-CccCCCCCCCChhhhhe------ecCchhhc---cc
Q 036195           80 S------------I------CH----EALAFPCLERIYVHGCP-SLRKLPFSLESGKRNGV------LIGEEEWW---NQ  127 (183)
Q Consensus        80 ~------------l------~~----~~~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~------i~~~~~w~---~~  127 (183)
                      .            +      +.    ........++++.+++. ...+.++.+|||||+|+      ++.+|+.+   ||
T Consensus        96 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP  175 (253)
T TIGR02323        96 RDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEP  175 (253)
T ss_pred             ccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence            0            0      00    00112346778889996 47888999999999983      47788887   89


Q ss_pred             ccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          128 LEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       128 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +...|+..+..+..++.....+...+++|+||+++.+...||+++.++
T Consensus       176 ~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~  223 (253)
T TIGR02323       176 TGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQ  223 (253)
T ss_pred             CccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEE
Confidence            999999999999999987766557899999999999999999999986

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=99.92  E-value=7e-27  Score=185.61  Aligned_cols=165  Identities=14%  Similarity=0.076  Sum_probs=123.1

Q ss_pred             cccccce-ecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEE-----------EEecCccccccccchheeehhhhcc
Q 036195            7 PHLRYIE-DDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFA-----------IYAVSLQKKISVCSFILIRRAYFFK   74 (183)
Q Consensus         7 ~~l~~l~-i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~-----------~~g~~~~~~~~~~~~~~l~~~~lg~   74 (183)
                      +++++++ +++||+++|+||||||||||+++|+|+++|++|+|.           ++|.++.....  .. ......+++
T Consensus        15 ~~l~~i~~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~--~~-~~~~~~i~~   91 (255)
T cd03236          15 FKLHRLPVPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFT--KL-LEGDVKVIV   91 (255)
T ss_pred             hhhhcCCCCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhH--Hh-hhcccceee
Confidence            4777776 689999999999999999999999999999999996           66665532100  00 000011122


Q ss_pred             CCCCccccc-------------cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccC
Q 036195           75 LPNLKSICH-------------EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDD  132 (183)
Q Consensus        75 lp~l~~l~~-------------~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d  132 (183)
                      .++......             ........++++.+++....+.++.+||+||+|+      +..+|+.+   ||....|
T Consensus        92 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD  171 (255)
T cd03236          92 KPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLD  171 (255)
T ss_pred             ecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCC
Confidence            222111110             0112245778899999988899999999999983      36677776   8999999


Q ss_pred             cccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          133 EATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+..+..++..+..+ .++|+++|||++.+...||++++++
T Consensus       172 ~~~~~~l~~~l~~l~~~-~~tIIiiSHd~~~~~~~ad~i~~l~  213 (255)
T cd03236         172 IKQRLNAARLIRELAED-DNYVLVVEHDLAVLDYLSDYIHCLY  213 (255)
T ss_pred             HHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhCCEEEEEC
Confidence            99999999999887654 6889999999999999999999996

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.92  E-value=1.3e-26  Score=175.41  Aligned_cols=153  Identities=14%  Similarity=0.048  Sum_probs=111.5

Q ss_pred             ccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccccc
Q 036195            8 HLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHEA   85 (183)
Q Consensus         8 ~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~~   85 (183)
                      +++  +|++++||+++|+||||||||||+++|+|+++|++|+|.++|.++....    ........++++++....   .
T Consensus        15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~----~~~~~~~~i~~~~q~~~~---~   87 (182)
T cd03215          15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRS----PRDAIRAGIAYVPEDRKR---E   87 (182)
T ss_pred             eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccC----HHHHHhCCeEEecCCccc---C
Confidence            666  4568999999999999999999999999999999999999998765320    000111234454443110   0


Q ss_pred             cchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCcccccCCCC
Q 036195           86 LAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQ  156 (183)
Q Consensus        86 ~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~  156 (183)
                      ..++..++.+++.....       ||+||+|+      +..+|+.+   ||....|+..+..+..++..+..+ ..++++
T Consensus        88 ~~~~~~t~~e~l~~~~~-------LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~tiii  159 (182)
T cd03215          88 GLVLDLSVAENIALSSL-------LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADA-GKAVLL  159 (182)
T ss_pred             cccCCCcHHHHHHHHhh-------cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEE
Confidence            01111223332221110       99999983      47788887   899999999999999999877554 689999


Q ss_pred             CCceeeeeecccceEEEEe
Q 036195          157 PSYTYEATIRPRYELICID  175 (183)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~  175 (183)
                      +||+++.+.+.||+++.++
T Consensus       160 ~sh~~~~~~~~~d~v~~l~  178 (182)
T cd03215         160 ISSELDELLGLCDRILVMY  178 (182)
T ss_pred             EeCCHHHHHHhCCEEEEec
Confidence            9999999999999999986

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=99.92  E-value=1.1e-26  Score=174.53  Aligned_cols=143  Identities=14%  Similarity=0.084  Sum_probs=110.8

Q ss_pred             ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195            7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE   84 (183)
Q Consensus         7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~   84 (183)
                      +++++  |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++....    ... ....++++++...+   
T Consensus        16 ~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~----~~~-~~~~i~~~~q~~~~---   87 (173)
T cd03246          16 PVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWD----PNE-LGDHVGYLPQDDEL---   87 (173)
T ss_pred             cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCC----HHH-HHhheEEECCCCcc---
Confidence            47775  568999999999999999999999999999999999999998664310    000 01234444443322   


Q ss_pred             ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCcccccCCC
Q 036195           85 ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIP  155 (183)
Q Consensus        85 ~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~  155 (183)
                         ++ .++.+++            ||+||+|+      ++.+|+++   ||+..-|+..+..+..++.....+ ..+++
T Consensus        88 ---~~-~tv~~~l------------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii  150 (173)
T cd03246          88 ---FS-GSIAENI------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAA-GATRI  150 (173)
T ss_pred             ---cc-CcHHHHC------------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhC-CCEEE
Confidence               22 2444543            99999983      47888887   999999999999999999887654 78999


Q ss_pred             CCCceeeeeecccceEEEEe
Q 036195          156 QPSYTYEATIRPRYELICID  175 (183)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ++|||++++ ..||+++.++
T Consensus       151 ~~sh~~~~~-~~~d~v~~l~  169 (173)
T cd03246         151 VIAHRPETL-ASADRILVLE  169 (173)
T ss_pred             EEeCCHHHH-HhCCEEEEEE
Confidence            999999977 6899999986

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.92  E-value=9.4e-27  Score=185.76  Aligned_cols=169  Identities=15%  Similarity=0.033  Sum_probs=121.9

Q ss_pred             ccccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcc--ccccc-cchheeehhhhccCCCC
Q 036195            4 LYRPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ--KKISV-CSFILIRRAYFFKLPNL   78 (183)
Q Consensus         4 ~~~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~--~~~~~-~~~~~l~~~~lg~lp~l   78 (183)
                      +.+++|+  +|++++||+++|+||||||||||+++|+|+++|++|+|.++|....  ..... ...+..+.+.....  .
T Consensus        35 ~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~--~  112 (264)
T PRK13546         35 KTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKML--C  112 (264)
T ss_pred             CceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHH--H
Confidence            4456777  5569999999999999999999999999999999999999885210  00000 00111111111100  0


Q ss_pred             ccccccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCcc
Q 036195           79 KSICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQ  149 (183)
Q Consensus        79 ~~l~~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~  149 (183)
                      ..............+++.+++....+.++.+||+||+|+      ++.+|+.+   ||+...|+..+..+...+..+.. 
T Consensus       113 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~-  191 (264)
T PRK13546        113 MGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKE-  191 (264)
T ss_pred             cCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHH-
Confidence            001000011123456778889888999999999999983      37788886   89999999999999998887753 


Q ss_pred             cccCCCCCCceeeeeecccceEEEEe
Q 036195          150 TVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ...+++++||+++.+...||++++++
T Consensus       192 ~g~tiIiisH~~~~i~~~~d~i~~l~  217 (264)
T PRK13546        192 QNKTIFFVSHNLGQVRQFCTKIAWIE  217 (264)
T ss_pred             CCCEEEEEcCCHHHHHHHcCEEEEEE
Confidence            47899999999999999999999986

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.92  E-value=1.2e-26  Score=173.89  Aligned_cols=142  Identities=18%  Similarity=0.143  Sum_probs=109.0

Q ss_pred             ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195            7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE   84 (183)
Q Consensus         7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~   84 (183)
                      +++++  |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...    .... ....++++++...+   
T Consensus        16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~----~~~~-~~~~i~~~~~~~~~---   87 (171)
T cd03228          16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDL----DLES-LRKNIAYVPQDPFL---   87 (171)
T ss_pred             ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhc----CHHH-HHhhEEEEcCCchh---
Confidence            57775  56899999999999999999999999999999999999999865421    0000 01224444433222   


Q ss_pred             ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCcccccCCC
Q 036195           85 ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIP  155 (183)
Q Consensus        85 ~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~  155 (183)
                         ++ .++.+++            ||+||+|+      +..+|+.+   ||..+.|+..+..+..++..+..  ..+++
T Consensus        88 ---~~-~t~~e~l------------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~tii  149 (171)
T cd03228          88 ---FS-GTIRENI------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK--GKTVI  149 (171)
T ss_pred             ---cc-chHHHHh------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC--CCEEE
Confidence               22 2444443            99999983      47788887   99999999999999999987753  48899


Q ss_pred             CCCceeeeeecccceEEEEe
Q 036195          156 QPSYTYEATIRPRYELICID  175 (183)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ++||+++.+.. ||+++.++
T Consensus       150 ~~sh~~~~~~~-~d~~~~l~  168 (171)
T cd03228         150 VIAHRLSTIRD-ADRIIVLD  168 (171)
T ss_pred             EEecCHHHHHh-CCEEEEEc
Confidence            99999999877 99999985

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=99.92  E-value=1.2e-26  Score=176.53  Aligned_cols=155  Identities=16%  Similarity=0.135  Sum_probs=114.4

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc--cc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK--SI   81 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~--~l   81 (183)
                      +++|++  |++++||++||+||||||||||+++|+|+++|++|+|.++|.++.....  ..... ...++++++..  .+
T Consensus         5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~--~~~~~-~~~i~~~~q~~~~~~   81 (190)
T TIGR01166         5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRK--GLLER-RQRVGLVFQDPDDQL   81 (190)
T ss_pred             cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEcccccc--chHHH-HhhEEEEecChhhcc
Confidence            567875  5699999999999999999999999999999999999999977531100  00000 01223333221  01


Q ss_pred             cc-----c---------c----cchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcc
Q 036195           82 CH-----E---------A----LAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEA  134 (183)
Q Consensus        82 ~~-----~---------~----~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~  134 (183)
                      +.     +         .    ......++++.+++....++++.+||+||+|+      +..+|+.+   ||+...|+.
T Consensus        82 ~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~  161 (190)
T TIGR01166        82 FAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPA  161 (190)
T ss_pred             ccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence            10     0         0    01134567888999988999999999999983      36788886   999999999


Q ss_pred             cccccccceeecCcccccCCCCCCceeeee
Q 036195          135 TKHVFSSKLIITTPQTVISIPQPSYTYEAT  164 (183)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (183)
                      .+..+..++.....+ ..+|+++|||++++
T Consensus       162 ~~~~~~~~l~~~~~~-~~tili~sH~~~~~  190 (190)
T TIGR01166       162 GREQMLAILRRLRAE-GMTVVISTHDVDLA  190 (190)
T ss_pred             HHHHHHHHHHHHHHc-CCEEEEEeeccccC
Confidence            999999999887655 78999999998764

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.92  E-value=2e-26  Score=199.47  Aligned_cols=168  Identities=14%  Similarity=0.044  Sum_probs=125.0

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEE-ecC---ccccccccchheeehhhhccCCCCc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIY-AVS---LQKKISVCSFILIRRAYFFKLPNLK   79 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~-g~~---~~~~~~~~~~~~l~~~~lg~lp~l~   79 (183)
                      +++|++  |+|++||+++|+||||||||||+++|+|+++|++|+|.++ |.+   +.... ...... ....++++++..
T Consensus       297 ~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~-~~~~~~-~~~~i~~v~q~~  374 (520)
T TIGR03269       297 VKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPG-PDGRGR-AKRYIGILHQEY  374 (520)
T ss_pred             ceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccc-hhhHHH-HhhhEEEEccCc
Confidence            358885  4599999999999999999999999999999999999996 532   11100 000000 001234444432


Q ss_pred             ccccc------c------------cchHHHHHHHHcCCCC-----ccCCCCCCCChhhhhe------ecCchhhc---cc
Q 036195           80 SICHE------A------------LAFPCLERIYVHGCPS-----LRKLPFSLESGKRNGV------LIGEEEWW---NQ  127 (183)
Q Consensus        80 ~l~~~------~------------~~~~~l~vLe~l~L~~-----L~~~~~~~LSgGqk~~------i~~~~~w~---~~  127 (183)
                      .++..      .            ....+.++++.+++..     +.++++.+|||||+|+      +..+|+.+   ||
T Consensus       375 ~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEP  454 (520)
T TIGR03269       375 DLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEP  454 (520)
T ss_pred             ccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence            22111      0            0113456788889864     5789999999999983      37788886   99


Q ss_pred             ccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          128 LEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       128 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ....|+..+..+..++..+..+...+++++|||++++.+.||++++++
T Consensus       455 t~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~  502 (520)
T TIGR03269       455 TGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMR  502 (520)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEE
Confidence            999999999999999988876668899999999999999999999996

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.92  E-value=7.7e-27  Score=174.86  Aligned_cols=170  Identities=13%  Similarity=0.054  Sum_probs=133.6

Q ss_pred             cccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccc----c----chh---eeehhh
Q 036195            5 YRPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISV----C----SFI---LIRRAY   71 (183)
Q Consensus         5 ~~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~----~----~~~---~l~~~~   71 (183)
                      ++++++++  +|.+||.+.++|||||||||||++++|+.+|+.|+|.++|+.+......    +    .+|   ...+..
T Consensus        17 ~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNva   96 (259)
T COG4525          17 PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVA   96 (259)
T ss_pred             chhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHHHHH
Confidence            45688754  6999999999999999999999999999999999999999977642110    0    000   111111


Q ss_pred             hccCCCCccccccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccc
Q 036195           72 FFKLPNLKSICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSK  142 (183)
Q Consensus        72 lg~lp~l~~l~~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~  142 (183)
                        +--++..+..........+.+..+++....++.+-+|||||+|+      ++.+|..+   ||+.-.|.-+++..+.+
T Consensus        97 --fgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQel  174 (259)
T COG4525          97 --FGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQEL  174 (259)
T ss_pred             --HHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHH
Confidence              11122223222223345778889999999999999999999983      58899986   88999999999999999


Q ss_pred             eeecCcccccCCCCCCceeeeeecccceEEEEee
Q 036195          143 LIITTPQTVISIPQPSYTYEATIRPRYELICIDV  176 (183)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (183)
                      +-.+-.++...+++++||+|+.+=.++|+|+++=
T Consensus       175 Lldlw~~tgk~~lliTH~ieEAlflatrLvvlsp  208 (259)
T COG4525         175 LLDLWQETGKQVLLITHDIEEALFLATRLVVLSP  208 (259)
T ss_pred             HHHHHHHhCCeEEEEeccHHHHHhhhheeEEecC
Confidence            9998889999999999999999999999999874

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.92  E-value=1.5e-26  Score=220.97  Aligned_cols=163  Identities=17%  Similarity=0.069  Sum_probs=131.0

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++++++  +|++||++||+||||||||||+|+|+|+++|++|+|+++|.++....     . .....+++.||...++.
T Consensus      1952 ~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~-----~-~~r~~IGy~pQ~~~L~~ 2025 (2272)
T TIGR01257      1952 SPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNI-----S-DVHQNMGYCPQFDAIDD 2025 (2272)
T ss_pred             ceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchH-----H-HHhhhEEEEeccccCCC
Confidence            4588855  58999999999999999999999999999999999999998774210     0 01123555555433322


Q ss_pred             ccc-------------------chHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195           84 EAL-------------------AFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT  135 (183)
Q Consensus        84 ~~~-------------------~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~  135 (183)
                      ...                   ...+.++++.+++...+++++.+|||||||+      +.++|+.+   ||....|+..
T Consensus      2026 ~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~s 2105 (2272)
T TIGR01257      2026 LLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQA 2105 (2272)
T ss_pred             CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHH
Confidence            100                   1123467888999999999999999999983      47888886   9999999999


Q ss_pred             ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+...+..+..+ .++|+++||+++++.+.|||+++++
T Consensus      2106 r~~l~~lL~~l~~~-g~TIILtTH~mee~e~lcDrV~IL~ 2144 (2272)
T TIGR01257      2106 RRMLWNTIVSIIRE-GRAVVLTSHSMEECEALCTRLAIMV 2144 (2272)
T ss_pred             HHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEE
Confidence            99999999888666 7899999999999999999999986

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.92  E-value=1.2e-26  Score=201.18  Aligned_cols=169  Identities=12%  Similarity=0.012  Sum_probs=126.3

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCC-----CCcEEEEEecCccccccccchheeehhhhccCCCC
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSD-----MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNL   78 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p-----~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l   78 (183)
                      +++|+++  ++++||++||+||||||||||+|+|+|+++|     ++|+|.++|.++...... .........+++++|.
T Consensus        22 ~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~-~~~~~~~~~ig~v~Q~  100 (529)
T PRK15134         22 RTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ-TLRGVRGNKIAMIFQE  100 (529)
T ss_pred             eeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH-HHHHHhcCceEEEecC
Confidence            3688854  5899999999999999999999999999986     799999999876421000 0000000123333332


Q ss_pred             cc--cc--------------------ccccchHHHHHHHHcCCCC---ccCCCCCCCChhhhhe------ecCchhhc--
Q 036195           79 KS--IC--------------------HEALAFPCLERIYVHGCPS---LRKLPFSLESGKRNGV------LIGEEEWW--  125 (183)
Q Consensus        79 ~~--l~--------------------~~~~~~~~l~vLe~l~L~~---L~~~~~~~LSgGqk~~------i~~~~~w~--  125 (183)
                      ..  ++                    .........++++.+++..   +.++++.+|||||+|+      ++.+|+.+  
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llll  180 (529)
T PRK15134        101 PMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIA  180 (529)
T ss_pred             chhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEE
Confidence            10  00                    0001123567888899975   4588999999999983      47788887  


Q ss_pred             -ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          126 -NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       126 -~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                       ||...-|+..+..+..++..+..+...+++++|||++.+...||+|++++
T Consensus       181 DEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~  231 (529)
T PRK15134        181 DEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQ  231 (529)
T ss_pred             cCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEE
Confidence             99999999999999999988876667899999999999999999999997

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=2.3e-26  Score=182.87  Aligned_cols=164  Identities=15%  Similarity=0.020  Sum_probs=120.7

Q ss_pred             ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCC-----CCcEEEEEecCccccccccchheeehhhhccCCCCc
Q 036195            7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSD-----MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK   79 (183)
Q Consensus         7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p-----~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~   79 (183)
                      ++|++  |++.+||++||+||||||||||+++|+|+++|     ++|+|.++|.++.....  . .......++++++..
T Consensus        26 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~--~-~~~~~~~i~~v~q~~  102 (258)
T PRK14268         26 QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDV--D-VVELRKNVGMVFQKP  102 (258)
T ss_pred             eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccc--h-HHHHhhhEEEEecCC
Confidence            57775  45899999999999999999999999999985     89999999986542100  0 000011233333322


Q ss_pred             cccc-----c---------c----cchHHHHHHHHcCCC----CccCCCCCCCChhhhhe------ecCchhhc---ccc
Q 036195           80 SICH-----E---------A----LAFPCLERIYVHGCP----SLRKLPFSLESGKRNGV------LIGEEEWW---NQL  128 (183)
Q Consensus        80 ~l~~-----~---------~----~~~~~l~vLe~l~L~----~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l  128 (183)
                      .++.     +         .    ......++++.+++.    ...+.++.+||+||+|+      ++.+|+.+   ||+
T Consensus       103 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt  182 (258)
T PRK14268        103 NPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPT  182 (258)
T ss_pred             ccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence            1111     0         0    011235577777773    45688899999999983      36778877   899


Q ss_pred             cccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          129 EWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       129 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ...|+.++..+..++..+. + ..+++++|||++.+.+.||++++++
T Consensus       183 ~~LD~~~~~~l~~~l~~l~-~-~~tiiivsH~~~~~~~~~d~i~~l~  227 (258)
T PRK14268        183 SALDPISTARIEDLIMNLK-K-DYTIVIVTHNMQQAARISDYTGFFL  227 (258)
T ss_pred             cccCHHHHHHHHHHHHHHh-h-CCEEEEEECCHHHHHHhCCEEEEEE
Confidence            9999999999999998774 3 5889999999999999999999996

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.92  E-value=1.6e-26  Score=181.30  Aligned_cols=164  Identities=14%  Similarity=0.055  Sum_probs=132.5

Q ss_pred             cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccccc----
Q 036195           11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHEAL----   86 (183)
Q Consensus        11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~~~----   86 (183)
                      +|+++.-.++||.|+||||||||+|+|+|+.+|+.|.|.++|+-+.+.......+ .....+||+.|...+|++..    
T Consensus        18 ~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp-~~~RriGYVFQDARLFpH~tVrgN   96 (352)
T COG4148          18 NFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLP-PEKRRIGYVFQDARLFPHYTVRGN   96 (352)
T ss_pred             eccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccC-hhhheeeeEeeccccccceEEecc
Confidence            4455555799999999999999999999999999999999998665432111111 12245677666555554321    


Q ss_pred             ---------chHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCc
Q 036195           87 ---------AFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTP  148 (183)
Q Consensus        87 ---------~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~  148 (183)
                               .....++.+.+|+.+|.++.+.+|||||||+      +...|+.+   |||.--|..-|..+.||+.-+..
T Consensus        97 L~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~  176 (352)
T COG4148          97 LRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRD  176 (352)
T ss_pred             hhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHH
Confidence                     1134678899999999999999999999984      37788886   89999999999999999999999


Q ss_pred             ccccCCCCCCceeeeeecccceEEEEe
Q 036195          149 QTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+-|+-+||-+.++.+.+|+|+.++
T Consensus       177 e~~IPIlYVSHS~~Ev~RLAd~vV~le  203 (352)
T COG4148         177 EINIPILYVSHSLDEVLRLADRVVVLE  203 (352)
T ss_pred             hcCCCEEEEecCHHHHHhhhheEEEec
Confidence            988888999999999999999999987

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=2e-26  Score=184.35  Aligned_cols=164  Identities=12%  Similarity=0.024  Sum_probs=119.8

Q ss_pred             ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCC-----CCCcEEEEEecCccccccccchheeehhhhccCCCCc
Q 036195            7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFS-----DMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK   79 (183)
Q Consensus         7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~-----p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~   79 (183)
                      ++|++  |+|++||+++|+||||||||||+++|+|+++     |++|+|.++|.++.....  ..... ...++++++..
T Consensus        27 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~--~~~~~-~~~i~~v~q~~  103 (269)
T PRK14259         27 EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRV--DPVEV-RRRIGMVFQQP  103 (269)
T ss_pred             EEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccC--CHHHH-hhceEEEccCC
Confidence            57775  4689999999999999999999999999987     699999999986531000  00000 01233333322


Q ss_pred             cccc-----------------cccchHHHHHHHHcCC----CCccCCCCCCCChhhhhe------ecCchhhc---cccc
Q 036195           80 SICH-----------------EALAFPCLERIYVHGC----PSLRKLPFSLESGKRNGV------LIGEEEWW---NQLE  129 (183)
Q Consensus        80 ~l~~-----------------~~~~~~~l~vLe~l~L----~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~  129 (183)
                      .++.                 ........++++.+++    ....+.++.+||+||+|+      +..+|+++   ||+.
T Consensus       104 ~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~  183 (269)
T PRK14259        104 NPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCS  183 (269)
T ss_pred             ccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence            1111                 0001123456777765    345788899999999983      47788887   8999


Q ss_pred             ccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          130 WDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       130 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ..|+..+..+..++..+..  ..+++++||+++.+...||++++++
T Consensus       184 gLD~~~~~~l~~~l~~~~~--~~tiiivtH~~~~~~~~~d~i~~l~  227 (269)
T PRK14259        184 ALDPISTLKIEETMHELKK--NFTIVIVTHNMQQAVRVSDMTAFFN  227 (269)
T ss_pred             cCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhcCEEEEEe
Confidence            9999999999999987743  3789999999999999999999998

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.92  E-value=1.9e-26  Score=198.76  Aligned_cols=165  Identities=14%  Similarity=0.069  Sum_probs=123.9

Q ss_pred             ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCC--CCcEEEEEecCccccccccchheeehhhhccCCCCccc
Q 036195            6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSD--MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSI   81 (183)
Q Consensus         6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p--~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l   81 (183)
                      +++|+  ||++++||++||+||||||||||+++|+|+++|  ++|+|.++|+++.....    .......++++++...+
T Consensus        14 ~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~----~~~~~~~i~~v~q~~~~   89 (500)
T TIGR02633        14 VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNI----RDTERAGIVIIHQELTL   89 (500)
T ss_pred             eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCH----HHHHhCCEEEEeecccc
Confidence            45787  456999999999999999999999999999987  79999999976642100    00000112222221111


Q ss_pred             cc-----------------------cccchHHHHHHHHcCCCCcc-CCCCCCCChhhhhe------ecCchhhc---ccc
Q 036195           82 CH-----------------------EALAFPCLERIYVHGCPSLR-KLPFSLESGKRNGV------LIGEEEWW---NQL  128 (183)
Q Consensus        82 ~~-----------------------~~~~~~~l~vLe~l~L~~L~-~~~~~~LSgGqk~~------i~~~~~w~---~~l  128 (183)
                      +.                       ........++++.+++.... ++++.+|||||+|+      ++.+|+.+   ||+
T Consensus        90 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt  169 (500)
T TIGR02633        90 VPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPS  169 (500)
T ss_pred             CCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Confidence            00                       00112356788899997654 67899999999983      47788887   999


Q ss_pred             cccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          129 EWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       129 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ...|+..+..+..++..+..+ ..+|+++|||++++...||+++.++
T Consensus       170 ~~LD~~~~~~l~~~l~~l~~~-g~tviiitHd~~~~~~~~d~i~~l~  215 (500)
T TIGR02633       170 SSLTEKETEILLDIIRDLKAH-GVACVYISHKLNEVKAVCDTICVIR  215 (500)
T ss_pred             CCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCcHHHHHHhCCEEEEEe
Confidence            999999999999999887644 7899999999999999999999996

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.92  E-value=4.6e-26  Score=175.69  Aligned_cols=157  Identities=13%  Similarity=0.098  Sum_probs=119.4

Q ss_pred             ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc-
Q 036195            7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH-   83 (183)
Q Consensus         7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~-   83 (183)
                      .++++  |+|.+||+++|+||||||||||+++|+|+.+|++|+|.++|.++....        ....++++++...++. 
T Consensus        16 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--------~~~~~~~~~~~~~~~~~   87 (207)
T PRK13539         16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPD--------VAEACHYLGHRNAMKPA   87 (207)
T ss_pred             EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchh--------hHhhcEEecCCCcCCCC
Confidence            46774  568999999999999999999999999999999999999987643110        0011222222111100 


Q ss_pred             --------------cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccc
Q 036195           84 --------------EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFS  140 (183)
Q Consensus        84 --------------~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~  140 (183)
                                    ........++++.+++..+.+.++.+||+||+|+      +..+|+.+   ||....|+.++..+.
T Consensus        88 ~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~  167 (207)
T PRK13539         88 LTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFA  167 (207)
T ss_pred             CcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence                          0111235778899999888899999999999983      47788886   899999999999999


Q ss_pred             cceeecCcccccCCCCCCceeeeeecccceEEEE
Q 036195          141 SKLIITTPQTVISIPQPSYTYEATIRPRYELICI  174 (183)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (183)
                      .++..+..+ ..+++++||+++++..  |+++-+
T Consensus       168 ~~l~~~~~~-~~tiii~sH~~~~~~~--~~~~~~  198 (207)
T PRK13539        168 ELIRAHLAQ-GGIVIAATHIPLGLPG--ARELDL  198 (207)
T ss_pred             HHHHHHHHC-CCEEEEEeCCchhhcc--CcEEee
Confidence            999877555 7899999999999876  877654

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=99.92  E-value=3.2e-26  Score=181.45  Aligned_cols=165  Identities=15%  Similarity=0.001  Sum_probs=120.3

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCC-----CCCcEEEEEecCccccccccchheeehhhhccCCCC
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFS-----DMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNL   78 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~-----p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l   78 (183)
                      +++|+++  ++++||+++|+||||||||||+++|+|+.+     |++|+|.++|+++.....  ... .....++++++.
T Consensus        19 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~--~~~-~~~~~i~~v~q~   95 (253)
T PRK14242         19 FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHV--DVV-ELRRRVGMVFQK   95 (253)
T ss_pred             eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEcccccc--CHH-HHhhcEEEEecC
Confidence            3578755  589999999999999999999999999974     689999999987642100  000 000123333332


Q ss_pred             cccccc-------------------ccchHHHHHHHHcCCC----CccCCCCCCCChhhhhe------ecCchhhc---c
Q 036195           79 KSICHE-------------------ALAFPCLERIYVHGCP----SLRKLPFSLESGKRNGV------LIGEEEWW---N  126 (183)
Q Consensus        79 ~~l~~~-------------------~~~~~~l~vLe~l~L~----~L~~~~~~~LSgGqk~~------i~~~~~w~---~  126 (183)
                      ..++..                   .......++++.+++.    .+.+.++.+|||||+|+      +..+|+.+   |
T Consensus        96 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDE  175 (253)
T PRK14242         96 PNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDE  175 (253)
T ss_pred             CCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            211110                   0011234567777774    35678899999999983      36788886   8


Q ss_pred             cccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          127 QLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       127 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      |....|+..+..+..++..+..  ..+|+++|||++.+.+.||+++.|+
T Consensus       176 Pt~~LD~~~~~~l~~~l~~~~~--~~tvii~tH~~~~~~~~~d~v~~l~  222 (253)
T PRK14242        176 PASALDPIATQKIEELIHELKA--RYTIIIVTHNMQQAARVSDVTAFFY  222 (253)
T ss_pred             CcccCCHHHHHHHHHHHHHHhc--CCeEEEEEecHHHHHHhCCEEEEEE
Confidence            9999999999999999988743  4789999999999999999999997

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=3e-26  Score=181.48  Aligned_cols=165  Identities=13%  Similarity=0.040  Sum_probs=120.6

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCC-----CCCcEEEEEecCccccccccchheeehhhhccCCCC
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFS-----DMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNL   78 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~-----p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l   78 (183)
                      +++++++  ++.+||+++|+||||||||||+++|+|+.+     |++|+|.++|.++......   .......++++++.
T Consensus        18 ~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~---~~~~~~~i~~v~q~   94 (251)
T PRK14244         18 KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTN---VVLLRAKVGMVFQK   94 (251)
T ss_pred             eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccc---hHHHhhhEEEEecC
Confidence            3578755  589999999999999999999999999986     4799999999765421000   00000122333322


Q ss_pred             ccccc--------------c------ccchHHHHHHHHcCCCC----ccCCCCCCCChhhhhe------ecCchhhc---
Q 036195           79 KSICH--------------E------ALAFPCLERIYVHGCPS----LRKLPFSLESGKRNGV------LIGEEEWW---  125 (183)
Q Consensus        79 ~~l~~--------------~------~~~~~~l~vLe~l~L~~----L~~~~~~~LSgGqk~~------i~~~~~w~---  125 (183)
                      ..++.              .      .......++++.+++..    ..+.++.+||+||+|+      +..+|+.|   
T Consensus        95 ~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllD  174 (251)
T PRK14244         95 PNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMD  174 (251)
T ss_pred             cccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            11111              0      00112346788888854    4567889999999983      36788887   


Q ss_pred             ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          126 NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       126 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ||....|+.++..+..++..+. + ..+|+++||+++.+.+.||++++|+
T Consensus       175 EPt~~LD~~~~~~l~~~l~~~~-~-~~tiiiisH~~~~~~~~~d~i~~l~  222 (251)
T PRK14244        175 EPCSALDPVATNVIENLIQELK-K-NFTIIVVTHSMKQAKKVSDRVAFFQ  222 (251)
T ss_pred             CCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHhhcCEEEEEE
Confidence            8999999999999999998774 3 6899999999999999999999997

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=3.3e-26  Score=181.05  Aligned_cols=163  Identities=16%  Similarity=0.033  Sum_probs=120.5

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCC-----CCcEEEEEecCccccccccchheeehhhhccCCCC
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSD-----MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNL   78 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p-----~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l   78 (183)
                      ++++++  |++++||+++|+||||||||||+++|+|+++|     ++|+|.++|.++....    .... ...++++++.
T Consensus        16 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~----~~~~-~~~i~~v~q~   90 (250)
T PRK14247         16 VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMD----VIEL-RRRVQMVFQI   90 (250)
T ss_pred             eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCC----HHHH-hccEEEEecc
Confidence            357875  45899999999999999999999999999974     7999999998764210    0000 0112222222


Q ss_pred             ccccc---------------------cccchHHHHHHHHcCCC----CccCCCCCCCChhhhhe------ecCchhhc--
Q 036195           79 KSICH---------------------EALAFPCLERIYVHGCP----SLRKLPFSLESGKRNGV------LIGEEEWW--  125 (183)
Q Consensus        79 ~~l~~---------------------~~~~~~~l~vLe~l~L~----~L~~~~~~~LSgGqk~~------i~~~~~w~--  125 (183)
                      ..++.                     ........++++.+++.    ...+.++.+|||||+|+      +..+|+.+  
T Consensus        91 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllL  170 (250)
T PRK14247         91 PNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLA  170 (250)
T ss_pred             CccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            11110                     00012345678888875    35688899999999983      36788887  


Q ss_pred             -ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          126 -NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       126 -~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                       ||....|+..+..+...+..+. + ..+++++||+++++...||+++.++
T Consensus       171 DEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~  219 (250)
T PRK14247        171 DEPTANLDPENTAKIESLFLELK-K-DMTIVLVTHFPQQAARISDYVAFLY  219 (250)
T ss_pred             cCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhcCEEEEEE
Confidence             8999999999999999998874 3 5789999999999999999999986

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=99.92  E-value=1.6e-26  Score=174.07  Aligned_cols=123  Identities=12%  Similarity=0.039  Sum_probs=102.0

Q ss_pred             cccc-cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccccc
Q 036195            7 PHLR-YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHEA   85 (183)
Q Consensus         7 ~~l~-~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~~   85 (183)
                      ++++ ++++++||+++|+||||||||||+|+|+|+++|++|+|.++|.++                 ++.++..      
T Consensus        14 ~~l~~~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i-----------------~~~~q~~------   70 (177)
T cd03222          14 FLLVELGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITP-----------------VYKPQYI------   70 (177)
T ss_pred             EEEccCcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEE-----------------EEEcccC------
Confidence            4454 568999999999999999999999999999999999999987532                 2222110      


Q ss_pred             cchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCcccccCCCC
Q 036195           86 LAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQ  156 (183)
Q Consensus        86 ~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~  156 (183)
                      .                       ||+||+|+      +..+|+.+   ||+...|+..+..+...+.....+...++++
T Consensus        71 ~-----------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiii  127 (177)
T cd03222          71 D-----------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALV  127 (177)
T ss_pred             C-----------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEE
Confidence            0                       99999983      46788887   8999999999999999988776553478999


Q ss_pred             CCceeeeeecccceEEEEe
Q 036195          157 PSYTYEATIRPRYELICID  175 (183)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~  175 (183)
                      +||+++++.+.||+++.++
T Consensus       128 vsH~~~~~~~~~d~i~~l~  146 (177)
T cd03222         128 VEHDLAVLDYLSDRIHVFE  146 (177)
T ss_pred             EECCHHHHHHhCCEEEEEc
Confidence            9999999999999999986

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=99.92  E-value=1.7e-26  Score=184.61  Aligned_cols=168  Identities=15%  Similarity=-0.015  Sum_probs=126.5

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc--cc
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK--SI   81 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~--~l   81 (183)
                      +++++++  ++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++...... .... ....++++++..  .+
T Consensus        25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~-~~~~-~~~~i~~v~q~~~~~~  102 (268)
T PRK10419         25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA-QRKA-FRRDIQMVFQDSISAV  102 (268)
T ss_pred             eeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh-HHHH-HHhcEEEEEcChhhcc
Confidence            4688755  5899999999999999999999999999999999999999865421000 0000 001122222221  00


Q ss_pred             cc----------------c----ccchHHHHHHHHcCCC-CccCCCCCCCChhhhhe------ecCchhhc---cccccc
Q 036195           82 CH----------------E----ALAFPCLERIYVHGCP-SLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWD  131 (183)
Q Consensus        82 ~~----------------~----~~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~  131 (183)
                      +.                .    .......++++.+++. .+.+.++.+||+||+|+      ++.+|+.+   ||+...
T Consensus       103 ~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~L  182 (268)
T PRK10419        103 NPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNL  182 (268)
T ss_pred             CCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCccc
Confidence            00                0    0011356778888996 58899999999999983      47788887   899999


Q ss_pred             CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      |+..+..+..++..+..+...+++++||+++.+...||+++.|+
T Consensus       183 D~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~  226 (268)
T PRK10419        183 DLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMD  226 (268)
T ss_pred             CHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEE
Confidence            99999999999988776667899999999999999999999996

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=4.9e-26  Score=180.34  Aligned_cols=165  Identities=10%  Similarity=-0.023  Sum_probs=120.0

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCC--C---CCcEEEEEecCccccccccchheeehhhhccCCCC
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFS--D---MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNL   78 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~--p---~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l   78 (183)
                      +++|++  |++.+||+++|+||||||||||+++|+|+++  |   ++|+|.++|.++.....  .... ....++++++.
T Consensus        17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~--~~~~-~~~~i~~~~q~   93 (252)
T PRK14256         17 NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGV--DPVS-IRRRVGMVFQK   93 (252)
T ss_pred             eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccC--ChHH-hhccEEEEecC
Confidence            457875  5689999999999999999999999999986  4   69999999987642100  0000 00112232322


Q ss_pred             cccccc--------------------ccchHHHHHHHHcCCC----CccCCCCCCCChhhhhe------ecCchhhc---
Q 036195           79 KSICHE--------------------ALAFPCLERIYVHGCP----SLRKLPFSLESGKRNGV------LIGEEEWW---  125 (183)
Q Consensus        79 ~~l~~~--------------------~~~~~~l~vLe~l~L~----~L~~~~~~~LSgGqk~~------i~~~~~w~---  125 (183)
                      ..++..                    .......++++.+++.    .+.+.++.+||+||+|+      +..+|+.+   
T Consensus        94 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD  173 (252)
T PRK14256         94 PNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMD  173 (252)
T ss_pred             CCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            111110                    0012245667777774    35677899999999983      36788887   


Q ss_pred             ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          126 NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       126 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ||+...|+.++..+...+..+..+  .+|+++||+++.+...||+++.++
T Consensus       174 EP~~gLD~~~~~~l~~~l~~~~~~--~tiiivsH~~~~~~~~~d~i~~l~  221 (252)
T PRK14256        174 EPASALDPISTLKIEELIEELKEK--YTIIIVTHNMQQAARVSDYTAFFY  221 (252)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHhC--CcEEEEECCHHHHHhhCCEEEEEE
Confidence            999999999999999999888643  689999999999999999999985

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=99.92  E-value=4.9e-26  Score=178.55  Aligned_cols=162  Identities=15%  Similarity=0.114  Sum_probs=115.6

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      ++++++  |++.+||+++|+||||||||||+++|+|+.+|++|+|.++|.++....    .... ...++++++...++.
T Consensus        14 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~----~~~~-~~~i~~~~q~~~~~~   88 (236)
T cd03253          14 RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVT----LDSL-RRAIGVVPQDTVLFN   88 (236)
T ss_pred             CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCC----HHHH-HhhEEEECCCChhhc
Confidence            347775  568999999999999999999999999999999999999997664310    0000 012233333222111


Q ss_pred             c------------ccchHHHHHHHHc-----------CCCCccCCCCCCCChhhhhe------ecCchhhc---cccccc
Q 036195           84 E------------ALAFPCLERIYVH-----------GCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWD  131 (183)
Q Consensus        84 ~------------~~~~~~l~vLe~l-----------~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~  131 (183)
                      .            .......+.++.+           ++..+.+.++.+||+||+|+      +..+|+++   ||+.+.
T Consensus        89 ~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~L  168 (236)
T cd03253          89 DTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSAL  168 (236)
T ss_pred             chHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence            0            0011112222222           33444566788999999983      48889997   999999


Q ss_pred             CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      |+..+..+..++..+..  ..+++++||+++.+.. ||+++.++
T Consensus       169 D~~~~~~l~~~l~~~~~--~~tiii~sh~~~~~~~-~d~~~~l~  209 (236)
T cd03253         169 DTHTEREIQAALRDVSK--GRTTIVIAHRLSTIVN-ADKIIVLK  209 (236)
T ss_pred             CHHHHHHHHHHHHHhcC--CCEEEEEcCCHHHHHh-CCEEEEEE
Confidence            99999999999987754  6789999999999865 99999986

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.92  E-value=1.8e-26  Score=200.14  Aligned_cols=167  Identities=13%  Similarity=0.012  Sum_probs=125.2

Q ss_pred             ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc--cc
Q 036195            6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK--SI   81 (183)
Q Consensus         6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~--~l   81 (183)
                      +++|+  ||++++||++||+||||||||||+|+|+|++ |++|+|+++|.++...... ..... ...++++++..  .+
T Consensus       299 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~~G~i~~~g~~i~~~~~~-~~~~~-~~~i~~v~q~~~~~l  375 (529)
T PRK15134        299 NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLNRR-QLLPV-RHRIQVVFQDPNSSL  375 (529)
T ss_pred             ceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCcEEEECCEEccccchh-hHHHh-hhceEEEEeCchhhc
Confidence            46888  5569999999999999999999999999998 5999999999765421000 00000 01122222211  00


Q ss_pred             cc---------------------cccchHHHHHHHHcCCC-CccCCCCCCCChhhhhe------ecCchhhc---ccccc
Q 036195           82 CH---------------------EALAFPCLERIYVHGCP-SLRKLPFSLESGKRNGV------LIGEEEWW---NQLEW  130 (183)
Q Consensus        82 ~~---------------------~~~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~  130 (183)
                      +.                     ......+.++++.+++. ...++++.+|||||+|+      ++.+|+.+   ||...
T Consensus       376 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~  455 (529)
T PRK15134        376 NPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSS  455 (529)
T ss_pred             CCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccc
Confidence            00                     00012346778889997 57899999999999983      37788887   99999


Q ss_pred             cCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          131 DDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       131 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      .|+..+..+..++..+..+...+|+++|||++.+...||+++.|+
T Consensus       456 LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~  500 (529)
T PRK15134        456 LDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLR  500 (529)
T ss_pred             cCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEE
Confidence            999999999999998876667899999999999999999999996

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=99.92  E-value=4.3e-26  Score=180.55  Aligned_cols=165  Identities=13%  Similarity=-0.029  Sum_probs=119.6

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcC--CCCCCcEEEEEecCccccccccchheeehhhhccCCCCccc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDM--FSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSI   81 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl--~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l   81 (183)
                      +++|++  |++++||++||+||||||||||+++|+|+  ++|++|+|.++|.++.....    .......++++++....
T Consensus        20 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~----~~~~~~~~~~~~q~~~~   95 (252)
T CHL00131         20 NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEP----EERAHLGIFLAFQYPIE   95 (252)
T ss_pred             EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCCh----hhhheeeEEEEeccccc
Confidence            357775  56999999999999999999999999998  57999999999876543100    00000001111111000


Q ss_pred             -------------c---------ccc----cchHHHHHHHHcCCC-CccCCCCC-CCChhhhhe------ecCchhhc--
Q 036195           82 -------------C---------HEA----LAFPCLERIYVHGCP-SLRKLPFS-LESGKRNGV------LIGEEEWW--  125 (183)
Q Consensus        82 -------------~---------~~~----~~~~~l~vLe~l~L~-~L~~~~~~-~LSgGqk~~------i~~~~~w~--  125 (183)
                                   +         ...    ......++++.+++. .+.+.++. .|||||+|+      ++.+|+.+  
T Consensus        96 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llll  175 (252)
T CHL00131         96 IPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAIL  175 (252)
T ss_pred             cccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence                         0         000    012345678889997 46777776 599999983      47788887  


Q ss_pred             -ccccccCcccccccccceeecCcccccCCCCCCceeeeeecc-cceEEEEe
Q 036195          126 -NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRP-RYELICID  175 (183)
Q Consensus       126 -~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  175 (183)
                       ||+...|+.++..+..++..+..+ ..+++++|||++.+... ||+++.++
T Consensus       176 DEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~~tH~~~~~~~~~~d~i~~l~  226 (252)
T CHL00131        176 DETDSGLDIDALKIIAEGINKLMTS-ENSIILITHYQRLLDYIKPDYVHVMQ  226 (252)
T ss_pred             cCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHhhhCCEEEEEe
Confidence             899999999999999999877644 78899999999999875 99999986

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=99.92  E-value=2.9e-26  Score=183.20  Aligned_cols=165  Identities=13%  Similarity=0.022  Sum_probs=120.6

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCC-----CCcEEEEEecCccccccccchheeehhhhccCCCC
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSD-----MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNL   78 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p-----~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l   78 (183)
                      +++|+++  +|++||+++|+||||||||||+++|+|+++|     ++|+|+++|+++.....  . .......++++++.
T Consensus        32 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~--~-~~~~~~~i~~v~q~  108 (267)
T PRK14235         32 KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL--D-VVELRARVGMVFQK  108 (267)
T ss_pred             EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc--c-hHHHhhceEEEecC
Confidence            3578754  5899999999999999999999999999975     89999999987642100  0 00000112222222


Q ss_pred             ccccc--------------------cccchHHHHHHHHcCCCC----ccCCCCCCCChhhhhe------ecCchhhc---
Q 036195           79 KSICH--------------------EALAFPCLERIYVHGCPS----LRKLPFSLESGKRNGV------LIGEEEWW---  125 (183)
Q Consensus        79 ~~l~~--------------------~~~~~~~l~vLe~l~L~~----L~~~~~~~LSgGqk~~------i~~~~~w~---  125 (183)
                      ..++.                    ........++++.+++..    ..+.++.+||+||+|+      +..+|+.+   
T Consensus       109 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLD  188 (267)
T PRK14235        109 PNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMD  188 (267)
T ss_pred             CCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence            11110                    000122456788888853    4577899999999983      36788887   


Q ss_pred             ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          126 NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       126 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ||+...|+..+..+..++..+..  ..+|+++|||++.+...||++++++
T Consensus       189 EPt~~LD~~~~~~l~~~L~~l~~--~~tiiivtH~~~~~~~~~d~v~~l~  236 (267)
T PRK14235        189 EPCSALDPIATAKVEELIDELRQ--NYTIVIVTHSMQQAARVSQRTAFFH  236 (267)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHhc--CCeEEEEEcCHHHHHhhCCEEEEEE
Confidence            99999999999999999987754  3689999999999999999999997

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.92  E-value=2.4e-26  Score=196.18  Aligned_cols=167  Identities=16%  Similarity=0.060  Sum_probs=123.0

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcccccc--c-cchheeehhhhccCCCCcc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKIS--V-CSFILIRRAYFFKLPNLKS   80 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~--~-~~~~~l~~~~lg~lp~l~~   80 (183)
                      +++|++  |++++|+++||+||||||||||+++|+|+++|++|+|.++|.+..-...  . ..++..+.+.+...  ...
T Consensus        37 ~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~--~~~  114 (549)
T PRK13545         37 HYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQLTGIENIELKGL--MMG  114 (549)
T ss_pred             ceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccCCCCcHHHHHHhhhh--hcC
Confidence            457875  4589999999999999999999999999999999999998864210000  0 00111111111100  000


Q ss_pred             ccccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCcccc
Q 036195           81 ICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTV  151 (183)
Q Consensus        81 l~~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~  151 (183)
                      ...........++++.+++....++++.+|||||+|+      ++.+|+.+   ||+...|+..+..+...+..+..+ .
T Consensus       115 ~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~-G  193 (549)
T PRK13545        115 LTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQ-G  193 (549)
T ss_pred             CCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhC-C
Confidence            1011111234567888999988999999999999983      36778886   899999999999999998877544 7


Q ss_pred             cCCCCCCceeeeeecccceEEEEe
Q 036195          152 ISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ++|+++|||++.+...||++++|+
T Consensus       194 ~TIIIVSHdl~~i~~l~DrIivL~  217 (549)
T PRK13545        194 KTIFFISHSLSQVKSFCTKALWLH  217 (549)
T ss_pred             CEEEEEECCHHHHHHhCCEEEEEE
Confidence            899999999999999999999996

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.92  E-value=2.6e-26  Score=198.83  Aligned_cols=170  Identities=15%  Similarity=0.059  Sum_probs=124.7

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCC--CCCCcEEEEEe-----------------------cCcccc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMF--SDMSHKFAIYA-----------------------VSLQKK   58 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~--~p~~G~I~~~g-----------------------~~~~~~   58 (183)
                      +++|++  |++++||+++|+||||||||||+++|+|++  +|++|+|.+++                       .++...
T Consensus        13 ~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~   92 (520)
T TIGR03269        13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPE   92 (520)
T ss_pred             eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccccccccccccccccc
Confidence            467875  569999999999999999999999999997  79999999973                       111000


Q ss_pred             -ccccc--hh--eeehhhhccCCCC-cccccc-------------------ccchHHHHHHHHcCCCCccCCCCCCCChh
Q 036195           59 -ISVCS--FI--LIRRAYFFKLPNL-KSICHE-------------------ALAFPCLERIYVHGCPSLRKLPFSLESGK  113 (183)
Q Consensus        59 -~~~~~--~~--~l~~~~lg~lp~l-~~l~~~-------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgG  113 (183)
                       .....  ..  ......++++++. ..++..                   .....+.++++.+++..+.++++.+||||
T Consensus        93 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG  172 (520)
T TIGR03269        93 EVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGG  172 (520)
T ss_pred             chhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCcccCCHH
Confidence             00000  00  0001123333332 111110                   00123566789999998889999999999


Q ss_pred             hhhe------ecCchhhc---ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          114 RNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       114 qk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      |+|+      ++.+|+.+   ||+..-|+..+..+..++..+..+...+|+++|||++.+.+.||+++.|+
T Consensus       173 q~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~l~  243 (520)
T TIGR03269       173 EKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLE  243 (520)
T ss_pred             HHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEe
Confidence            9983      37788887   99999999999999999988766667899999999999999999999996

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=2.8e-26  Score=185.02  Aligned_cols=164  Identities=11%  Similarity=-0.009  Sum_probs=119.9

Q ss_pred             ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCC-----CCCcEEEEEecCccccccccchheeehhhhccCCCCc
Q 036195            7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFS-----DMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK   79 (183)
Q Consensus         7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~-----p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~   79 (183)
                      ++|++  |+|.+||+++|+||||||||||+++|+|+.+     |++|+|.++|.++.....  . .......++++++..
T Consensus        53 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~--~-~~~~~~~i~~v~q~~  129 (286)
T PRK14275         53 EAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFT--D-EVLLRKKIGMVFQKP  129 (286)
T ss_pred             EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhccc--c-hHHhhhcEEEECCCC
Confidence            57775  5689999999999999999999999999864     499999999976542100  0 000012234444432


Q ss_pred             ccccc--------------cc-----chHHHHHHHHcCC----CCccCCCCCCCChhhhhe------ecCchhhc---cc
Q 036195           80 SICHE--------------AL-----AFPCLERIYVHGC----PSLRKLPFSLESGKRNGV------LIGEEEWW---NQ  127 (183)
Q Consensus        80 ~l~~~--------------~~-----~~~~l~vLe~l~L----~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~  127 (183)
                      .++..              ..     .....++++.+++    ....+.++.+|||||+|+      +..+|+++   ||
T Consensus       130 ~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEP  209 (286)
T PRK14275        130 NPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEP  209 (286)
T ss_pred             CCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence            22210              00     1123455666665    346678899999999983      47788887   89


Q ss_pred             ccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          128 LEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       128 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +...|+..+..+..++..+..+  .+|+++|||++++.+.||++++++
T Consensus       210 t~gLD~~~~~~l~~~L~~~~~~--~tvIivsH~~~~~~~~~d~i~~L~  255 (286)
T PRK14275        210 TSALDPKATAKIEDLIQELRGS--YTIMIVTHNMQQASRVSDYTMFFY  255 (286)
T ss_pred             CccCCHHHHHHHHHHHHHHhcC--CeEEEEeCCHHHHHHhCCEEEEEE
Confidence            9999999999999999877543  789999999999999999999997

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=99.92  E-value=5.3e-26  Score=179.56  Aligned_cols=165  Identities=15%  Similarity=-0.043  Sum_probs=118.0

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCC--CCCCcEEEEEecCccccccccchheeehhhhccCCCCc--
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMF--SDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK--   79 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~--~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~--   79 (183)
                      +++++++  ++++||+++|+||||||||||+++|+|+.  +|++|+|.++|.++.....    .......++++++..  
T Consensus        14 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~----~~~~~~~i~~~~q~~~~   89 (248)
T PRK09580         14 KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSP----EDRAGEGIFMAFQYPVE   89 (248)
T ss_pred             eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCH----HHHhhcceEEEecCchh
Confidence            3577755  58999999999999999999999999995  6999999999987642100    000000111111110  


Q ss_pred             ------------------cccc-cc-c----chHHHHHHHHcCCC-CccCCCCC-CCChhhhhe------ecCchhhc--
Q 036195           80 ------------------SICH-EA-L----AFPCLERIYVHGCP-SLRKLPFS-LESGKRNGV------LIGEEEWW--  125 (183)
Q Consensus        80 ------------------~l~~-~~-~----~~~~l~vLe~l~L~-~L~~~~~~-~LSgGqk~~------i~~~~~w~--  125 (183)
                                        .... .. .    .....+.++.++++ .+.++++. +||+||+|+      +..+|+.+  
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illL  169 (248)
T PRK09580         90 IPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCIL  169 (248)
T ss_pred             ccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence                              0000 00 0    11234567778884 46667665 799999983      37788887  


Q ss_pred             -ccccccCcccccccccceeecCcccccCCCCCCceeeeeecc-cceEEEEe
Q 036195          126 -NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRP-RYELICID  175 (183)
Q Consensus       126 -~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  175 (183)
                       ||+...|+..+..+..++..+..+ ..+|+++|||++.+... +|++++++
T Consensus       170 DEPt~~LD~~~~~~l~~~l~~l~~~-~~tiii~sH~~~~~~~~~~d~i~~l~  220 (248)
T PRK09580        170 DESDSGLDIDALKIVADGVNSLRDG-KRSFIIVTHYQRILDYIKPDYVHVLY  220 (248)
T ss_pred             eCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHhhhCCEEEEEE
Confidence             899999999999999998877654 68999999999998887 89999885

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.92  E-value=5.9e-26  Score=173.51  Aligned_cols=151  Identities=16%  Similarity=0.071  Sum_probs=113.2

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCC--CCCCcEEEEEecCccccccccchheeehhhhccCCCCccc
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMF--SDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSI   81 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~--~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l   81 (183)
                      +++++++  ++++||+++|+||||||||||+++|+|++  +|++|+|.++|+++...        .....+++.++...+
T Consensus        22 ~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~--------~~~~~i~~~~q~~~~   93 (194)
T cd03213          22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKR--------SFRKIIGYVPQDDIL   93 (194)
T ss_pred             ccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchH--------hhhheEEEccCcccC
Confidence            4678754  58999999999999999999999999999  99999999999876421        011234555554333


Q ss_pred             cccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCccccc
Q 036195           82 CHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVI  152 (183)
Q Consensus        82 ~~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~  152 (183)
                      +......+.......          ..+||+||+|+      ++.+|+.+   ||+...|+..+..+..++..+..+ ..
T Consensus        94 ~~~~t~~~~i~~~~~----------~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~-~~  162 (194)
T cd03213          94 HPTLTVRETLMFAAK----------LRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADT-GR  162 (194)
T ss_pred             CCCCcHHHHHHHHHH----------hccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC-CC
Confidence            322222221111111          12899999983      36677776   899999999999999999887655 78


Q ss_pred             CCCCCCceee-eeecccceEEEEe
Q 036195          153 SIPQPSYTYE-ATIRPRYELICID  175 (183)
Q Consensus       153 ~~~~~~~~~~-~~~~~~~~~~~~~  175 (183)
                      +++++||+++ .....||++++++
T Consensus       163 tiii~sh~~~~~~~~~~d~v~~l~  186 (194)
T cd03213         163 TIICSIHQPSSEIFELFDKLLLLS  186 (194)
T ss_pred             EEEEEecCchHHHHHhcCEEEEEe
Confidence            9999999997 6788999999986

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.92  E-value=3.9e-26  Score=193.04  Aligned_cols=167  Identities=14%  Similarity=0.030  Sum_probs=130.0

Q ss_pred             cccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcccc-----------------ccccchhee
Q 036195            7 PHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKK-----------------ISVCSFILI   67 (183)
Q Consensus         7 ~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~-----------------~~~~~~~~l   67 (183)
                      ++|+  +|++.+||++||+|.||||||||+|+|+|.++|++|+|.++|+.+...                 ......++.
T Consensus        22 ~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVa  101 (500)
T COG1129          22 KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVA  101 (500)
T ss_pred             eeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHH
Confidence            4566  556999999999999999999999999999999999999999865421                 122344556


Q ss_pred             ehhhhccCCCC--ccccccccchHHHHHHHHcCCCCccCCCCCCCChhhhh--ee----cCchhhc---ccccccCcccc
Q 036195           68 RRAYFFKLPNL--KSICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNG--VL----IGEEEWW---NQLEWDDEATK  136 (183)
Q Consensus        68 ~~~~lg~lp~l--~~l~~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~--~i----~~~~~w~---~~l~~~d~~~~  136 (183)
                      +++.+++.|..  +.+.+..+.....++++.+++..-.+.++.+||.||+|  +|    ..+.+.+   ||..--.+...
T Consensus       102 eNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~  181 (500)
T COG1129         102 ENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKET  181 (500)
T ss_pred             HHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence            66777777654  22333344456778899888854488999999999999  43    3344443   77777777667


Q ss_pred             cccccceeecCcccccCCCCCCceeeeeecccceEEEE
Q 036195          137 HVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICI  174 (183)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (183)
                      +.+-.++..++.+ ..+++.+||.|+++++.|||+.++
T Consensus       182 ~~Lf~~ir~Lk~~-Gv~ii~ISHrl~Ei~~i~DritVl  218 (500)
T COG1129         182 ERLFDLIRRLKAQ-GVAIIYISHRLDEVFEIADRITVL  218 (500)
T ss_pred             HHHHHHHHHHHhC-CCEEEEEcCcHHHHHHhcCEEEEE
Confidence            7777788888877 999999999999999999999886

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.92  E-value=4.6e-26  Score=175.14  Aligned_cols=160  Identities=11%  Similarity=-0.031  Sum_probs=114.8

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCC---CCCcEEEEEecCccccccccchheeehhhhccCCCCcc
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFS---DMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKS   80 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~---p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~   80 (183)
                      +++|+++  ++++||+++|+||||||||||+++|+|+++   |++|+|.++|.++...      .......+++.++...
T Consensus        20 ~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~------~~~~~~~i~~~~q~~~   93 (202)
T cd03233          20 IPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEF------AEKYPGEIIYVSEEDV   93 (202)
T ss_pred             ceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccc------hhhhcceEEEEecccc
Confidence            4677755  599999999999999999999999999999   8999999999876431      0011123445554433


Q ss_pred             ccccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCcccc
Q 036195           81 ICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTV  151 (183)
Q Consensus        81 l~~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~  151 (183)
                      ++......+.+......    ..+.++.+||+||+|+      ++.+|+.+   ||....|+.++..+..++..+..+..
T Consensus        94 ~~~~~tv~~~l~~~~~~----~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~  169 (202)
T cd03233          94 HFPTLTVRETLDFALRC----KGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLK  169 (202)
T ss_pred             cCCCCcHHHHHhhhhhh----ccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCC
Confidence            33222222221111111    1577889999999983      36677776   89999999999999999998766544


Q ss_pred             cCCCC-CCceeeeeecccceEEEEe
Q 036195          152 ISIPQ-PSYTYEATIRPRYELICID  175 (183)
Q Consensus       152 ~~~~~-~~~~~~~~~~~~~~~~~~~  175 (183)
                      ..+++ ++|+.+.+.+.||++++++
T Consensus       170 ~t~ii~~~h~~~~~~~~~d~i~~l~  194 (202)
T cd03233         170 TTTFVSLYQASDEIYDLFDKVLVLY  194 (202)
T ss_pred             CEEEEEEcCCHHHHHHhCCeEEEEE
Confidence            55455 5667789999999999986

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.92  E-value=2.2e-26  Score=171.36  Aligned_cols=133  Identities=15%  Similarity=0.046  Sum_probs=105.4

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      ++++++  |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++....    ........+++++      +
T Consensus        13 ~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~----~~~~~~~~i~~~~------q   82 (163)
T cd03216          13 VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFAS----PRDARRAGIAMVY------Q   82 (163)
T ss_pred             eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCC----HHHHHhcCeEEEE------e
Confidence            367775  569999999999999999999999999999999999999997654210    0000001122211      1


Q ss_pred             cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCcccccCC
Q 036195           84 EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISI  154 (183)
Q Consensus        84 ~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~  154 (183)
                                                ||+||+|+      +..+|+.+   ||+...|+..+..+..++..+..+ ..++
T Consensus        83 --------------------------LS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~-~~ti  135 (163)
T cd03216          83 --------------------------LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQ-GVAV  135 (163)
T ss_pred             --------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHC-CCEE
Confidence                                      99999983      36777776   899999999999999999877654 7899


Q ss_pred             CCCCceeeeeecccceEEEEe
Q 036195          155 PQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +++|||++.+...||+++.++
T Consensus       136 ii~sh~~~~~~~~~d~~~~l~  156 (163)
T cd03216         136 IFISHRLDEVFEIADRVTVLR  156 (163)
T ss_pred             EEEeCCHHHHHHhCCEEEEEE
Confidence            999999999999999999985

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=3.9e-26  Score=180.77  Aligned_cols=165  Identities=12%  Similarity=0.013  Sum_probs=119.6

Q ss_pred             ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCC-----CCCcEEEEEecCccccccccchheeehhhhccCCCC
Q 036195            6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFS-----DMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNL   78 (183)
Q Consensus         6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~-----p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l   78 (183)
                      +++|+  ||++.+||+++|+||||||||||+++|+|+++     |++|+|.++|+++.....  .... ....++++++.
T Consensus        17 ~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~--~~~~-~~~~i~~~~q~   93 (251)
T PRK14251         17 YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKM--DLVE-LRKEVGMVFQQ   93 (251)
T ss_pred             eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccc--hHHH-hhccEEEEecC
Confidence            46776  55699999999999999999999999999997     489999999986532100  0000 00112222222


Q ss_pred             ccccc-----c--------------ccchHHHHHHHHcCCC----CccCCCCCCCChhhhhe------ecCchhhc---c
Q 036195           79 KSICH-----E--------------ALAFPCLERIYVHGCP----SLRKLPFSLESGKRNGV------LIGEEEWW---N  126 (183)
Q Consensus        79 ~~l~~-----~--------------~~~~~~l~vLe~l~L~----~L~~~~~~~LSgGqk~~------i~~~~~w~---~  126 (183)
                      ..++.     +              .......++++.+++.    ...+.++.+||+||+|+      +..+|+.+   |
T Consensus        94 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDE  173 (251)
T PRK14251         94 PTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDE  173 (251)
T ss_pred             CccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecC
Confidence            11110     0              0011234567777773    45678899999999983      47788886   8


Q ss_pred             cccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          127 QLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       127 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      |+...|+.++..+..++.....  ..+|+++||+++.+.+.||++++++
T Consensus       174 P~~~LD~~~~~~l~~~l~~~~~--~~tiiiisH~~~~~~~~~d~i~~l~  220 (251)
T PRK14251        174 PTSALDPISSSEIEETLMELKH--QYTFIMVTHNLQQAGRISDQTAFLM  220 (251)
T ss_pred             CCccCCHHHHHHHHHHHHHHHc--CCeEEEEECCHHHHHhhcCEEEEEE
Confidence            9999999999999999987743  4789999999999999999999996

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=99.92  E-value=4.1e-26  Score=172.06  Aligned_cols=144  Identities=14%  Similarity=0.038  Sum_probs=111.7

Q ss_pred             ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195            7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE   84 (183)
Q Consensus         7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~   84 (183)
                      +++++  |++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++...      .......++++++...++  
T Consensus        16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~------~~~~~~~i~~~~q~~~~~--   87 (178)
T cd03247          16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL------EKALSSLISVLNQRPYLF--   87 (178)
T ss_pred             cceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH------HHHHHhhEEEEccCCeee--
Confidence            57874  56999999999999999999999999999999999999999765321      000112345555433222  


Q ss_pred             ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCcccccCCC
Q 036195           85 ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIP  155 (183)
Q Consensus        85 ~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~  155 (183)
                          + .++.+++         +.+||+||+|+      ++.+|+.+   ||..+.|+..+..+...+..+. + ..+++
T Consensus        88 ----~-~tv~~~i---------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii  151 (178)
T cd03247          88 ----D-TTLRNNL---------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-K-DKTLI  151 (178)
T ss_pred             ----c-ccHHHhh---------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-C-CCEEE
Confidence                2 2334433         78999999983      47888887   8999999999999999988774 4 68899


Q ss_pred             CCCceeeeeecccceEEEEe
Q 036195          156 QPSYTYEATIRPRYELICID  175 (183)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ++||+++++. .+|++++++
T Consensus       152 ~~sh~~~~~~-~~d~~~~l~  170 (178)
T cd03247         152 WITHHLTGIE-HMDKILFLE  170 (178)
T ss_pred             EEecCHHHHH-hCCEEEEEE
Confidence            9999999875 699999986

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.92  E-value=8.2e-26  Score=173.36  Aligned_cols=154  Identities=16%  Similarity=0.137  Sum_probs=116.0

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|++  |++++||++||+||||||||||+++|+|+.+|++|+|+++|.++....     .. ....++++++...++.
T Consensus        14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~-----~~-~~~~i~~~~q~~~~~~   87 (200)
T PRK13540         14 QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDL-----CT-YQKQLCFVGHRSGINP   87 (200)
T ss_pred             eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCH-----HH-HHhheEEeccccccCc
Confidence            357774  568999999999999999999999999999999999999998764210     00 0012333333221111


Q ss_pred             c--------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccc
Q 036195           84 E--------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFS  140 (183)
Q Consensus        84 ~--------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~  140 (183)
                      .              .......++++.+++....++++.+||+||+|+      +..+|+.+   ||....|+.++..+.
T Consensus        88 ~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~  167 (200)
T PRK13540         88 YLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTII  167 (200)
T ss_pred             CCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHH
Confidence            0              011235678888899888899999999999983      47788876   899999999999999


Q ss_pred             cceeecCcccccCCCCCCceeeeeec
Q 036195          141 SKLIITTPQTVISIPQPSYTYEATIR  166 (183)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (183)
                      .++.....+ ..+++++||+.+.+-.
T Consensus       168 ~~l~~~~~~-~~tiii~sh~~~~~~~  192 (200)
T PRK13540        168 TKIQEHRAK-GGAVLLTSHQDLPLNK  192 (200)
T ss_pred             HHHHHHHHc-CCEEEEEeCCchhccc
Confidence            999877544 7889999999887744

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=99.91  E-value=1.1e-25  Score=172.39  Aligned_cols=158  Identities=13%  Similarity=0.119  Sum_probs=116.9

Q ss_pred             ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++++  ||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++....     . .....++++++...++.
T Consensus        13 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-----~-~~~~~i~~~~q~~~~~~   86 (198)
T TIGR01189        13 RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-----D-EPHRNILYLGHLPGLKP   86 (198)
T ss_pred             EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-----H-HhhhheEEeccCccccc
Confidence            35777  4569999999999999999999999999999999999999998754311     0 00012233333221111


Q ss_pred             c---------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccccccc
Q 036195           84 E---------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVF  139 (183)
Q Consensus        84 ~---------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~  139 (183)
                      .               .......++++.+++....++++.+||+||+|+      +..+|+.+   ||....|+..+..+
T Consensus        87 ~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l  166 (198)
T TIGR01189        87 ELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALL  166 (198)
T ss_pred             CCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH
Confidence            0               001235677888999988899999999999983      37788887   89999999999999


Q ss_pred             ccceeecCcccccCCCCCCceeeeeecccceEE
Q 036195          140 SSKLIITTPQTVISIPQPSYTYEATIRPRYELI  172 (183)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (183)
                      ..++.....+ ..+++++||+.....  |+|++
T Consensus       167 ~~~l~~~~~~-~~tii~~sH~~~~~~--~~~~~  196 (198)
T TIGR01189       167 AGLLRAHLAR-GGIVLLTTHQDLGLV--EAREL  196 (198)
T ss_pred             HHHHHHHHhC-CCEEEEEEccccccc--ceEEe
Confidence            9999877544 678999999985433  35554

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=9e-26  Score=178.47  Aligned_cols=164  Identities=15%  Similarity=0.016  Sum_probs=119.6

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCC-----CCcEEEEEecCccccccccchheeehhhhccCCCC
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSD-----MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNL   78 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p-----~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l   78 (183)
                      +++|++  |++++||+++|+||||||||||+++|+|+.+|     ++|+|.++|.++....   . .......++++++.
T Consensus        16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~---~-~~~~~~~i~~~~q~   91 (249)
T PRK14253         16 NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNI---D-VADLRIKVGMVFQK   91 (249)
T ss_pred             eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEccccc---c-hHHHHhheeEEecC
Confidence            467875  56899999999999999999999999999986     5999999997653100   0 00001122333332


Q ss_pred             ccccc--------------cc-----cchHHHHHHHHcCCC----CccCCCCCCCChhhhhe------ecCchhhc---c
Q 036195           79 KSICH--------------EA-----LAFPCLERIYVHGCP----SLRKLPFSLESGKRNGV------LIGEEEWW---N  126 (183)
Q Consensus        79 ~~l~~--------------~~-----~~~~~l~vLe~l~L~----~L~~~~~~~LSgGqk~~------i~~~~~w~---~  126 (183)
                      ..++.              ..     ......++++.+++.    ...+.++.+||+||+|+      +..+|+.+   |
T Consensus        92 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE  171 (249)
T PRK14253         92 PNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDE  171 (249)
T ss_pred             CCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence            21111              00     011233456666663    45678899999999983      47788887   8


Q ss_pred             cccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          127 QLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       127 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      |+...|+.++..+..++..+..+  .+|+++||+++.+.+.||+++.|+
T Consensus       172 P~~~LD~~~~~~l~~~l~~~~~~--~tii~~sh~~~~~~~~~d~i~~l~  218 (249)
T PRK14253        172 PTSALDPIATHKIEELMEELKKN--YTIVIVTHSMQQARRISDRTAFFL  218 (249)
T ss_pred             CCccCCHHHHHHHHHHHHHHhcC--CeEEEEecCHHHHHHhCCEEEEEE
Confidence            99999999999999999988653  799999999999999999999996

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=99.91  E-value=9.8e-26  Score=173.70  Aligned_cols=157  Identities=17%  Similarity=0.094  Sum_probs=114.2

Q ss_pred             ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195            7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE   84 (183)
Q Consensus         7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~   84 (183)
                      +++++  |++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++....    ... ....++++++...++..
T Consensus        22 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~----~~~-~~~~i~~v~q~~~~~~~   96 (207)
T cd03369          22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIP----LED-LRSSLTIIPQDPTLFSG   96 (207)
T ss_pred             ccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCC----HHH-HHhhEEEEecCCcccCc
Confidence            57875  458999999999999999999999999999999999999998654210    000 01223444443322211


Q ss_pred             -----c---cchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecC
Q 036195           85 -----A---LAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITT  147 (183)
Q Consensus        85 -----~---~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~  147 (183)
                           .   ..+...++.+.++    .+.++.+||+||+|+      +..+|+.+   ||+...|+..+..+..++....
T Consensus        97 tv~~~l~~~~~~~~~~~~~~l~----~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~  172 (207)
T cd03369          97 TIRSNLDPFDEYSDEEIYGALR----VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF  172 (207)
T ss_pred             cHHHHhcccCCCCHHHHHHHhh----ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc
Confidence                 0   0011122333333    356789999999883      36788886   8999999999999999988764


Q ss_pred             cccccCCCCCCceeeeeecccceEEEEe
Q 036195          148 PQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                       + ..+++++||+++++.. ||++++++
T Consensus       173 -~-~~tiii~th~~~~~~~-~d~v~~l~  197 (207)
T cd03369         173 -T-NSTILTIAHRLRTIID-YDKILVMD  197 (207)
T ss_pred             -C-CCEEEEEeCCHHHHhh-CCEEEEEE
Confidence             4 6889999999999876 89999996

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=8.4e-26  Score=178.89  Aligned_cols=165  Identities=13%  Similarity=-0.011  Sum_probs=120.1

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCC-----CCcEEEEEecCccccccccchheeehhhhccCCCC
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSD-----MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNL   78 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p-----~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l   78 (183)
                      +++|++  |++.+||+++|+||||||||||+++|+|+.+|     ++|+|.++|.++.....  . .......++++++.
T Consensus        17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~--~-~~~~~~~i~~~~q~   93 (251)
T PRK14270         17 KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDV--D-VVELRKRVGMVFQK   93 (251)
T ss_pred             eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccc--c-HHHHHhheEEEecC
Confidence            357775  56899999999999999999999999999875     89999999987642100  0 00000122333332


Q ss_pred             ccccc-----c--------------ccchHHHHHHHHcCCC----CccCCCCCCCChhhhhe------ecCchhhc---c
Q 036195           79 KSICH-----E--------------ALAFPCLERIYVHGCP----SLRKLPFSLESGKRNGV------LIGEEEWW---N  126 (183)
Q Consensus        79 ~~l~~-----~--------------~~~~~~l~vLe~l~L~----~L~~~~~~~LSgGqk~~------i~~~~~w~---~  126 (183)
                      ..++.     +              .......++++.+++.    ...+.++.+||+||+|+      +..+|+.+   |
T Consensus        94 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE  173 (251)
T PRK14270         94 PNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDE  173 (251)
T ss_pred             CCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            21111     0              0011234567777763    45778899999999983      36678886   8


Q ss_pred             cccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          127 QLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       127 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      |+...|+.++..+..++.....+  .+++++||+++.+...||+++.|+
T Consensus       174 P~~~LD~~~~~~l~~~L~~~~~~--~tiiivsH~~~~~~~~~d~v~~l~  220 (251)
T PRK14270        174 PTSALDPISTLKIEDLMVELKKE--YTIVIVTHNMQQASRVSDYTAFFL  220 (251)
T ss_pred             CcccCCHHHHHHHHHHHHHHHhC--CeEEEEEcCHHHHHHhcCEEEEEE
Confidence            99999999999999999877543  789999999999999999999996

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=6.3e-26  Score=181.31  Aligned_cols=165  Identities=12%  Similarity=0.009  Sum_probs=119.6

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCC-----CCCcEEEEEecCccccccccchheeehhhhccCCCC
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFS-----DMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNL   78 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~-----p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l   78 (183)
                      +++|++  |++.+||+++|+||||||||||+++|+|+.+     |++|+|.++|+++.....  .... ....++++++.
T Consensus        34 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~--~~~~-~~~~i~~v~q~  110 (268)
T PRK14248         34 KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNI--NVVN-LRREIGMVFQK  110 (268)
T ss_pred             ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccc--cHHH-HhccEEEEecC
Confidence            457875  5689999999999999999999999999864     799999999987642100  0000 01123333332


Q ss_pred             cccccc-----c--------------cchHHHHHHHHcCCC----CccCCCCCCCChhhhhe------ecCchhhc---c
Q 036195           79 KSICHE-----A--------------LAFPCLERIYVHGCP----SLRKLPFSLESGKRNGV------LIGEEEWW---N  126 (183)
Q Consensus        79 ~~l~~~-----~--------------~~~~~l~vLe~l~L~----~L~~~~~~~LSgGqk~~------i~~~~~w~---~  126 (183)
                      ..++..     .              ......++++.+++.    ...+.++.+||+||+|+      ++.+|+++   |
T Consensus       111 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDE  190 (268)
T PRK14248        111 PNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDE  190 (268)
T ss_pred             CccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcC
Confidence            211110     0              001234456666663    45678899999999983      47788887   8


Q ss_pred             cccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          127 QLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       127 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      |+...|+.++..+..++..+..+  .+|+++|||++.+...||+++.++
T Consensus       191 Pt~~LD~~~~~~l~~~l~~~~~~--~tiii~tH~~~~~~~~~d~v~~l~  237 (268)
T PRK14248        191 PASALDPISNAKIEELITELKEE--YSIIIVTHNMQQALRVSDRTAFFL  237 (268)
T ss_pred             CCcccCHHHHHHHHHHHHHHhcC--CEEEEEEeCHHHHHHhCCEEEEEE
Confidence            99999999999999999887543  689999999999999999999996

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=99.91  E-value=6.6e-26  Score=173.97  Aligned_cols=153  Identities=12%  Similarity=-0.047  Sum_probs=113.2

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcC--CCCCCcEEEEEecCccccccccchheeehhhhccCCCCccc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDM--FSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSI   81 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl--~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l   81 (183)
                      ++++++  |++.+||+++|+||||||||||+++|+|+  ++|++|+|.++|.++....    ........++++++....
T Consensus        13 ~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~----~~~~~~~~i~~v~q~~~~   88 (200)
T cd03217          13 KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLP----PEERARLGIFLAFQYPPE   88 (200)
T ss_pred             EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCC----HHHHhhCcEEEeecChhh
Confidence            357775  56999999999999999999999999999  5799999999998765321    001111224555554333


Q ss_pred             cccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCccccc
Q 036195           82 CHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVI  152 (183)
Q Consensus        82 ~~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~  152 (183)
                      +...      .+.+.+      +....+||+||+|+      ++.+|+.+   ||....|+.++..+...+..+..+ ..
T Consensus        89 ~~~~------~~~~~l------~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~-~~  155 (200)
T cd03217          89 IPGV------KNADFL------RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREE-GK  155 (200)
T ss_pred             ccCc------cHHHHH------hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHC-CC
Confidence            3221      122221      23346899999983      37788877   899999999999999888876544 68


Q ss_pred             CCCCCCceeeeeec-ccceEEEEe
Q 036195          153 SIPQPSYTYEATIR-PRYELICID  175 (183)
Q Consensus       153 ~~~~~~~~~~~~~~-~~~~~~~~~  175 (183)
                      +++|+||+++.+.+ .+|+++.++
T Consensus       156 tiii~sh~~~~~~~~~~d~i~~l~  179 (200)
T cd03217         156 SVLIITHYQRLLDYIKPDRVHVLY  179 (200)
T ss_pred             EEEEEecCHHHHHHhhCCEEEEEE
Confidence            99999999998887 799999986

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.91  E-value=9.6e-26  Score=191.92  Aligned_cols=168  Identities=15%  Similarity=0.062  Sum_probs=129.7

Q ss_pred             cccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCC----CcEEEEEecCccccccccchheeehhhhccCCCCcc
Q 036195            7 PHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDM----SHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKS   80 (183)
Q Consensus         7 ~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~----~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~   80 (183)
                      ++++  ||++.+||++||+|.|||||||+.++|.|++++.    +|+|.|+|+++...... ....+....+++++|...
T Consensus        23 ~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~-~~r~~rg~~Ia~i~Q~p~  101 (539)
T COG1123          23 PAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER-EMRKLRGKRIAMIFQDPM  101 (539)
T ss_pred             eeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHH-HHHHhccccEEEEecCch
Confidence            4666  5679999999999999999999999999999887    89999999865432100 001111122233333210


Q ss_pred             --cc--------------------ccccchHHHHHHHHcCCCCccC--CCCCCCChhhhhe------ecCchhhc---cc
Q 036195           81 --IC--------------------HEALAFPCLERIYVHGCPSLRK--LPFSLESGKRNGV------LIGEEEWW---NQ  127 (183)
Q Consensus        81 --l~--------------------~~~~~~~~l~vLe~l~L~~L~~--~~~~~LSgGqk~~------i~~~~~w~---~~  127 (183)
                        +.                    .........++++.+++++-..  +++++|||||+|+      ++++|+.+   ||
T Consensus       102 ~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEP  181 (539)
T COG1123         102 TSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEP  181 (539)
T ss_pred             hhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCC
Confidence              00                    0111224678899999986554  4999999999993      58999997   99


Q ss_pred             ccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          128 LEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       128 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ..+-|+.++..+..++..+..+..++++++|||+..+-..||||+++.
T Consensus       182 TTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~  229 (539)
T COG1123         182 TTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMY  229 (539)
T ss_pred             ccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEE
Confidence            999999999999999999999999999999999999999999999875

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=1.5e-25  Score=178.56  Aligned_cols=167  Identities=16%  Similarity=0.075  Sum_probs=122.5

Q ss_pred             ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCC-----CCcEEEEEecCccccccccchheeehhhhccCCCC
Q 036195            6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSD-----MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNL   78 (183)
Q Consensus         6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p-----~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l   78 (183)
                      +++++  +|++++||+++|+||||||||||+++|+|+++|     ++|+|.++|.++.....  . .......++++++.
T Consensus        21 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~--~-~~~~~~~i~~v~q~   97 (261)
T PRK14263         21 FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGV--D-PVVVRRYIGMVFQQ   97 (261)
T ss_pred             EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEecccccc--c-hHhhhhceEEEecC
Confidence            35777  456999999999999999999999999999986     79999999987642100  0 00001123333332


Q ss_pred             ccccc-----c------------ccchHHHHHHHHcCCCC----ccCCCCCCCChhhhhe------ecCchhhc---ccc
Q 036195           79 KSICH-----E------------ALAFPCLERIYVHGCPS----LRKLPFSLESGKRNGV------LIGEEEWW---NQL  128 (183)
Q Consensus        79 ~~l~~-----~------------~~~~~~l~vLe~l~L~~----L~~~~~~~LSgGqk~~------i~~~~~w~---~~l  128 (183)
                      ..++.     +            .......++++.+++..    ..+.++.+||+||+|+      +..+|+.+   ||.
T Consensus        98 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt  177 (261)
T PRK14263         98 PNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPC  177 (261)
T ss_pred             CccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence            21111     0            00123456778888743    3457889999999983      47788887   899


Q ss_pred             cccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEeeC
Q 036195          129 EWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICIDVD  177 (183)
Q Consensus       129 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (183)
                      ...|+..+..+..++..+..  ..+++++||+++.++..||+++.+++|
T Consensus       178 sgLD~~~~~~l~~~l~~~~~--~~tii~isH~~~~i~~~~d~v~~l~~~  224 (261)
T PRK14263        178 SALDPIATRRVEELMVELKK--DYTIALVTHNMQQAIRVADTTAFFSVD  224 (261)
T ss_pred             ccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHhCCEEEEEecc
Confidence            99999999999999998753  478999999999999999999999755

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=99.91  E-value=1.1e-25  Score=179.82  Aligned_cols=165  Identities=12%  Similarity=0.028  Sum_probs=120.3

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCC-----CCCcEEEEEecCccccccccchheeehhhhccCCCC
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFS-----DMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNL   78 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~-----p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l   78 (183)
                      +++|++  |++.+||++||+||||||||||+++|+|+++     |++|+|.++|.++.....  .... ....++++++.
T Consensus        33 ~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~--~~~~-~~~~i~~v~q~  109 (267)
T PRK14237         33 KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEI--NVYE-MRKHIGMVFQR  109 (267)
T ss_pred             eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccC--ChHH-HhcceEEEecC
Confidence            467774  4689999999999999999999999999986     589999999987632100  0000 00122333332


Q ss_pred             ccccc-----c--------------ccchHHHHHHHHcCCC----CccCCCCCCCChhhhhe------ecCchhhc---c
Q 036195           79 KSICH-----E--------------ALAFPCLERIYVHGCP----SLRKLPFSLESGKRNGV------LIGEEEWW---N  126 (183)
Q Consensus        79 ~~l~~-----~--------------~~~~~~l~vLe~l~L~----~L~~~~~~~LSgGqk~~------i~~~~~w~---~  126 (183)
                      ..++.     +              .......++++.+++.    ...+.++.+||+||+|+      +..+|+.+   |
T Consensus       110 ~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDE  189 (267)
T PRK14237        110 PNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDE  189 (267)
T ss_pred             CccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            11110     0              0112234567777773    45688899999999983      47788887   8


Q ss_pred             cccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          127 QLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       127 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      |+...|+.++..+..++..+..  ..+++++||+++.+.+.||++++|+
T Consensus       190 Pt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~~~~~~~~d~i~~l~  236 (267)
T PRK14237        190 PASALDPISTMQLEETMFELKK--NYTIIIVTHNMQQAARASDYTAFFY  236 (267)
T ss_pred             CcccCCHHHHHHHHHHHHHHhc--CCEEEEEecCHHHHHHhcCEEEEEE
Confidence            9999999999999999988753  4789999999999999999999996

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=99.91  E-value=5.2e-26  Score=176.22  Aligned_cols=159  Identities=13%  Similarity=-0.033  Sum_probs=110.0

Q ss_pred             ccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEE-EEecCccccccccch---heeehhhhccCCCCccc
Q 036195            8 HLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFA-IYAVSLQKKISVCSF---ILIRRAYFFKLPNLKSI   81 (183)
Q Consensus         8 ~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~-~~g~~~~~~~~~~~~---~~l~~~~lg~lp~l~~l   81 (183)
                      +|+  ||++++||+++|+||||||||||+++|+|+++|++|+|. +++..+.-......+   +..+.+.+..  .   .
T Consensus         2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~--~---~   76 (213)
T PRK15177          2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPLGANSFILPGLTGEENARMMA--S---L   76 (213)
T ss_pred             eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceeccccccccCCcCcHHHHHHHHH--H---H
Confidence            566  456999999999999999999999999999999999997 766533210000011   1111111100  0   0


Q ss_pred             cccccchH-HHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccccccccccee-ecCccc
Q 036195           82 CHEALAFP-CLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLI-ITTPQT  150 (183)
Q Consensus        82 ~~~~~~~~-~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~-~~~~~~  150 (183)
                      +. ..... ...+.+..+++...+.++.+||+||+|+      ++.+|+++   ||+...|+..+..+...+. ..+ + 
T Consensus        77 ~~-~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~-~-  153 (213)
T PRK15177         77 YG-LDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQ-Q-  153 (213)
T ss_pred             cC-CCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhh-C-
Confidence            00 00111 2233455677778889999999999983      47788886   6778889888888777653 332 2 


Q ss_pred             ccCCCCCCceeeeeecccceEEEEe
Q 036195          151 VISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                       .+++++||+++.+...||++++++
T Consensus       154 -~~ii~vsH~~~~~~~~~d~i~~l~  177 (213)
T PRK15177        154 -KGLIVLTHNPRLIKEHCHAFGVLL  177 (213)
T ss_pred             -CcEEEEECCHHHHHHhcCeeEEEE
Confidence             468999999999999999999986

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=6.9e-26  Score=179.69  Aligned_cols=165  Identities=14%  Similarity=-0.020  Sum_probs=120.2

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCC-----CCcEEEEEecCccccccccchheeehhhhccCCCC
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSD-----MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNL   78 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p-----~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l   78 (183)
                      +++|++  |++++||+++|+||||||||||+++|+|+++|     ++|+|.++|.++.....  ... .....++++++.
T Consensus        20 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~--~~~-~~~~~i~~v~q~   96 (254)
T PRK14273         20 FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNF--DIL-ELRRKIGMVFQT   96 (254)
T ss_pred             ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccc--cHH-HHhhceEEEeec
Confidence            357775  56899999999999999999999999999987     59999999976532100  000 000112222222


Q ss_pred             ccccc--------------c-----ccchHHHHHHHHcCC----CCccCCCCCCCChhhhhe------ecCchhhc---c
Q 036195           79 KSICH--------------E-----ALAFPCLERIYVHGC----PSLRKLPFSLESGKRNGV------LIGEEEWW---N  126 (183)
Q Consensus        79 ~~l~~--------------~-----~~~~~~l~vLe~l~L----~~L~~~~~~~LSgGqk~~------i~~~~~w~---~  126 (183)
                      ..++.              .     .......++++.+++    ....+.++.+|||||+|+      +..+|+.+   |
T Consensus        97 ~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDE  176 (254)
T PRK14273         97 PNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDE  176 (254)
T ss_pred             cccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence            11110              0     001224556777776    345788899999999983      37788887   9


Q ss_pred             cccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          127 QLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       127 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      |+...|+..+..+...+..+. + ..+++++||+++++...||+++.++
T Consensus       177 Pt~~LD~~~~~~l~~~l~~~~-~-~~tvii~sH~~~~~~~~~d~i~~l~  223 (254)
T PRK14273        177 PTSALDPISTGKIEELIINLK-E-SYTIIIVTHNMQQAGRISDRTAFFL  223 (254)
T ss_pred             CCcccCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhCCEEEEEE
Confidence            999999999999999998885 3 4789999999999999999999985

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=99.91  E-value=1.3e-25  Score=177.61  Aligned_cols=165  Identities=14%  Similarity=-0.015  Sum_probs=118.8

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCC-----CCcEEEEEecCccccccccchheeehhhhccCCCC
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSD-----MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNL   78 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p-----~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l   78 (183)
                      ++++++  |++++||+++|+||||||||||+++|+|+.+|     ++|+|.++|.++.....  .... ....++++++.
T Consensus        16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~--~~~~-~~~~i~~~~q~   92 (250)
T PRK14240         16 FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDI--DVNQ-LRKRVGMVFQQ   92 (250)
T ss_pred             ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc--chHH-HhccEEEEecC
Confidence            357775  55899999999999999999999999999763     69999999987642100  0000 00112222222


Q ss_pred             ccccc--------------c-----ccchHHHHHHHHcCCC----CccCCCCCCCChhhhhe------ecCchhhc---c
Q 036195           79 KSICH--------------E-----ALAFPCLERIYVHGCP----SLRKLPFSLESGKRNGV------LIGEEEWW---N  126 (183)
Q Consensus        79 ~~l~~--------------~-----~~~~~~l~vLe~l~L~----~L~~~~~~~LSgGqk~~------i~~~~~w~---~  126 (183)
                      ..++.              .     .......++++.+++.    ...+.++.+||+||+|+      +..+|+.+   |
T Consensus        93 ~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE  172 (250)
T PRK14240         93 PNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDE  172 (250)
T ss_pred             CccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            11110              0     0011234556666653    45678899999999983      47788887   8


Q ss_pred             cccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          127 QLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       127 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      |+...|+..+..+..++..+..  ..+++++|||++.+.+.||++++|+
T Consensus       173 P~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~~~~~~~~d~v~~l~  219 (250)
T PRK14240        173 PTSALDPISTLKIEELIQELKK--DYTIVIVTHNMQQASRISDKTAFFL  219 (250)
T ss_pred             CCccCCHHHHHHHHHHHHHHhc--CCeEEEEEeCHHHHHhhCCEEEEEE
Confidence            9999999999999999987743  4789999999999999999999996

>PRK13409 putative ATPase RIL; Provisional

Probab=99.91  E-value=1.1e-25  Score=196.89  Aligned_cols=157  Identities=11%  Similarity=-0.024  Sum_probs=120.7

Q ss_pred             cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcc----ccccccchheeehhhhccCCCCcccccccc
Q 036195           11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ----KKISVCSFILIRRAYFFKLPNLKSICHEAL   86 (183)
Q Consensus        11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~----~~~~~~~~~~l~~~~lg~lp~l~~l~~~~~   86 (183)
                      ++++.+||++||+||||||||||+|+|+|+++|++|+|.++ ..+.    ........++.+.+.... .    .+  ..
T Consensus       359 s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-~~i~y~~Q~~~~~~~~tv~e~l~~~~-~----~~--~~  430 (590)
T PRK13409        359 GGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-LKISYKPQYIKPDYDGTVEDLLRSIT-D----DL--GS  430 (590)
T ss_pred             ceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-eeEEEecccccCCCCCcHHHHHHHHh-h----hc--Ch
Confidence            56789999999999999999999999999999999999875 1111    000000111111111110 0    00  01


Q ss_pred             chHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCcccccCCCCC
Q 036195           87 AFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQP  157 (183)
Q Consensus        87 ~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  157 (183)
                      .....++++.+++..+.++++.+|||||+|+      ++.+|+.+   ||....|+..+..+..++..+..+...+++++
T Consensus       431 ~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviiv  510 (590)
T PRK13409        431 SYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVV  510 (590)
T ss_pred             HHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence            2235678999999999999999999999983      37788887   89999999999999999998877668899999


Q ss_pred             CceeeeeecccceEEEEe
Q 036195          158 SYTYEATIRPRYELICID  175 (183)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~  175 (183)
                      |||++++...|||++.++
T Consensus       511 sHD~~~~~~~aDrvivl~  528 (590)
T PRK13409        511 DHDIYMIDYISDRLMVFE  528 (590)
T ss_pred             eCCHHHHHHhCCEEEEEc
Confidence            999999999999999986

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.91  E-value=7.2e-26  Score=177.02  Aligned_cols=164  Identities=15%  Similarity=0.032  Sum_probs=124.5

Q ss_pred             cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc-----------
Q 036195           11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK-----------   79 (183)
Q Consensus        11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~-----------   79 (183)
                      ||+|++|+++|++|||||||||++|+++|++.|++|.|.++|.++........  ......++...++.           
T Consensus        44 sf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~--~~~~~v~gqk~ql~Wdlp~~ds~~v  121 (325)
T COG4586          44 SFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYL--RSIGLVMGQKLQLWWDLPALDSLEV  121 (325)
T ss_pred             eeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHH--HHHHHHhhhhheeeeechhhhhHHH
Confidence            67799999999999999999999999999999999999999987654210000  00000111111110           


Q ss_pred             -----cccccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceee
Q 036195           80 -----SICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLII  145 (183)
Q Consensus        80 -----~l~~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~  145 (183)
                           .+.......+.....+.+++....+.|++.||-|||++      +.-.|+-+   ||.-.-|.+++..+..+++.
T Consensus       122 ~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke  201 (325)
T COG4586         122 LKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKE  201 (325)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHH
Confidence                 00000111234566788899999999999999999972      34456654   78889999999999999999


Q ss_pred             cCcccccCCCCCCceeeeeecccceEEEEee
Q 036195          146 TTPQTVISIPQPSYTYEATIRPRYELICIDV  176 (183)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (183)
                      ....+.++|+.+||++.-+-+-||||+-||-
T Consensus       202 ~n~~~~aTVllTTH~~~di~~lc~rv~~I~~  232 (325)
T COG4586         202 YNEERQATVLLTTHIFDDIATLCDRVLLIDQ  232 (325)
T ss_pred             HHHhhCceEEEEecchhhHHHhhhheEEeeC
Confidence            9999999999999999999999999999983

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=1.9e-25  Score=193.90  Aligned_cols=166  Identities=16%  Similarity=0.102  Sum_probs=117.5

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecC-cc----ccccccchheeehhhhcc----
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVS-LQ----KKISVCSFILIRRAYFFK----   74 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~-~~----~~~~~~~~~~l~~~~lg~----   74 (183)
                      +++|++  |++++||+++|+||||||||||+|+|+|+++|++|+|.+++.. +.    ....+...+..+.+.++.    
T Consensus        14 ~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~   93 (530)
T PRK15064         14 KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEEFTVLDTVIMGHTELW   93 (530)
T ss_pred             cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCCCcHHHHHHHhhHHHH
Confidence            468875  5699999999999999999999999999999999999998632 10    000000111111111110    


Q ss_pred             -----------CCCCcc---------------ccccccchHHHHHHHHcCCCCc-cCCCCCCCChhhhhe------ecCc
Q 036195           75 -----------LPNLKS---------------ICHEALAFPCLERIYVHGCPSL-RKLPFSLESGKRNGV------LIGE  121 (183)
Q Consensus        75 -----------lp~l~~---------------l~~~~~~~~~l~vLe~l~L~~L-~~~~~~~LSgGqk~~------i~~~  121 (183)
                                 .+....               ...........++++.+++... .++++.+|||||+|+      ++.+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~~~  173 (530)
T PRK15064         94 EVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSN  173 (530)
T ss_pred             HHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHHHHHHHHHHhcC
Confidence                       000000               0000011245678889999764 467899999999983      3678


Q ss_pred             hhhc---ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          122 EEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       122 ~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      |+.+   ||....|+..+..+..++.    +...+|+|+|||++.+.+.||+++.|+
T Consensus       174 p~lLlLDEPt~~LD~~~~~~l~~~l~----~~~~tiiivsHd~~~~~~~~d~i~~l~  226 (530)
T PRK15064        174 PDILLLDEPTNNLDINTIRWLEDVLN----ERNSTMIIISHDRHFLNSVCTHMADLD  226 (530)
T ss_pred             CCEEEEcCCCcccCHHHHHHHHHHHH----hCCCeEEEEeCCHHHHHhhcceEEEEe
Confidence            8876   8999999999999888875    236789999999999999999999997

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.91  E-value=8.8e-26  Score=199.11  Aligned_cols=169  Identities=11%  Similarity=0.011  Sum_probs=125.9

Q ss_pred             cccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcccc----ccc--cchh---eeehhhhccC
Q 036195            7 PHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKK----ISV--CSFI---LIRRAYFFKL   75 (183)
Q Consensus         7 ~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~----~~~--~~~~---~l~~~~lg~l   75 (183)
                      ++|+  ||++++||++||+||||||||||+++|+|+++|++|+|.++|.++...    ...  ....   ......++++
T Consensus        30 ~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v  109 (623)
T PRK10261         30 AAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMI  109 (623)
T ss_pred             eEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEEE
Confidence            6887  556899999999999999999999999999999999999987533110    000  0000   0000123333


Q ss_pred             CCCc--ccccc--------------------ccchHHHHHHHHcCCCC---ccCCCCCCCChhhhhe------ecCchhh
Q 036195           76 PNLK--SICHE--------------------ALAFPCLERIYVHGCPS---LRKLPFSLESGKRNGV------LIGEEEW  124 (183)
Q Consensus        76 p~l~--~l~~~--------------------~~~~~~l~vLe~l~L~~---L~~~~~~~LSgGqk~~------i~~~~~w  124 (183)
                      +|..  .++..                    .....+.++++.++++.   ..++++.+|||||+|+      ++.+|+.
T Consensus       110 ~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~l  189 (623)
T PRK10261        110 FQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAV  189 (623)
T ss_pred             EeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCCCE
Confidence            3321  11100                    00123556788899953   5788999999999983      4788888


Q ss_pred             c---ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          125 W---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       125 ~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +   ||....|+..+..+..++..+..+...+|+++|||++.+.+.||||+.++
T Consensus       190 LllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~  243 (623)
T PRK10261        190 LIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMY  243 (623)
T ss_pred             EEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEee
Confidence            7   99999999999999999998877668899999999999999999999997

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=1.6e-25  Score=177.17  Aligned_cols=165  Identities=12%  Similarity=0.008  Sum_probs=120.5

Q ss_pred             ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcC---CCC--CCcEEEEEecCccccccccchheeehhhhccCCCC
Q 036195            6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDM---FSD--MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNL   78 (183)
Q Consensus         6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl---~~p--~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l   78 (183)
                      +++|+  ||++++||+++|+||||||||||+++|+|+   .+|  ++|+|.++|.++.....  . .......++++++.
T Consensus        16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~--~-~~~~~~~i~~v~q~   92 (250)
T PRK14245         16 FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGV--Q-VDELRKNVGMVFQR   92 (250)
T ss_pred             EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccc--c-HHHHhhheEEEecC
Confidence            35776  566999999999999999999999999997   454  59999999987642100  0 00000123333332


Q ss_pred             ccccc-----c--------------ccchHHHHHHHHcCCC----CccCCCCCCCChhhhhe------ecCchhhc---c
Q 036195           79 KSICH-----E--------------ALAFPCLERIYVHGCP----SLRKLPFSLESGKRNGV------LIGEEEWW---N  126 (183)
Q Consensus        79 ~~l~~-----~--------------~~~~~~l~vLe~l~L~----~L~~~~~~~LSgGqk~~------i~~~~~w~---~  126 (183)
                      ..++.     +              .......++++.+++.    ...+.++.+||+||+|+      ++.+|+.+   |
T Consensus        93 ~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE  172 (250)
T PRK14245         93 PNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDE  172 (250)
T ss_pred             CccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            21111     0              0011245677888875    35678899999999983      37788887   9


Q ss_pred             cccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          127 QLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       127 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      |+...|+.++..+..++..+. + .++|+++|||++.+.+.||+++.++
T Consensus       173 Pt~~LD~~~~~~l~~~l~~~~-~-~~tiiivtH~~~~~~~~~d~v~~l~  219 (250)
T PRK14245        173 PASALDPISTAKVEELIHELK-K-DYTIVIVTHNMQQAARVSDKTAFFY  219 (250)
T ss_pred             CCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHhhCCEEEEEE
Confidence            999999999999999998874 3 4889999999999999999999996

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.91  E-value=6e-26  Score=181.61  Aligned_cols=168  Identities=13%  Similarity=0.020  Sum_probs=128.8

Q ss_pred             ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCC-C----CCcEEEEEecCccccccccchheeehhhhccCCCC
Q 036195            6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFS-D----MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNL   78 (183)
Q Consensus         6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~-p----~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l   78 (183)
                      .++++  ||++++||++||+|+|||||||+.++|+|+++ |    .+|+|.|+|+++.+.... ....++...+++.+|.
T Consensus        18 v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~-~~~~iRG~~I~mIfQ~   96 (316)
T COG0444          18 VKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK-ELRKIRGKEIAMIFQD   96 (316)
T ss_pred             EEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH-HHHhhcCceEEEEEcC
Confidence            35677  55699999999999999999999999999997 4    579999999976542100 0011111223333332


Q ss_pred             cccccc------------------c-----cchHHHHHHHHcCCCC---ccCCCCCCCChhhhhe------ecCchhhc-
Q 036195           79 KSICHE------------------A-----LAFPCLERIYVHGCPS---LRKLPFSLESGKRNGV------LIGEEEWW-  125 (183)
Q Consensus        79 ~~l~~~------------------~-----~~~~~l~vLe~l~L~~---L~~~~~~~LSgGqk~~------i~~~~~w~-  125 (183)
                      ..-.-+                  .     ....+.++++.+++++   ..+.++++|||||+|+      ++++|+.+ 
T Consensus        97 p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlI  176 (316)
T COG0444          97 PMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLI  176 (316)
T ss_pred             chhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEE
Confidence            100000                  0     0123567889999975   6789999999999994      48999997 


Q ss_pred             --ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEE
Q 036195          126 --NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICI  174 (183)
Q Consensus       126 --~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (183)
                        ||..--|..++..+..++..++.+...+++++|||+..|...||||++.
T Consensus       177 ADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VM  227 (316)
T COG0444         177 ADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVM  227 (316)
T ss_pred             eCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEE
Confidence              8999999999999999999999999999999999999999999999875

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=99.91  E-value=9.1e-26  Score=179.66  Aligned_cols=164  Identities=11%  Similarity=0.001  Sum_probs=119.9

Q ss_pred             ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCC-----CCCcEEEEEecCccccccccchheeehhhhccCCCCc
Q 036195            7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFS-----DMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK   79 (183)
Q Consensus         7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~-----p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~   79 (183)
                      ++|++  |++++||+++|+||||||||||+++|+|+++     |++|+|.++|.++.....  .... ....++++++..
T Consensus        27 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~--~~~~-~~~~i~~~~q~~  103 (260)
T PRK10744         27 HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ--DIAL-LRAKVGMVFQKP  103 (260)
T ss_pred             EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc--chHH-HhcceEEEecCC
Confidence            57875  5689999999999999999999999999986     589999999987632100  0000 001122222211


Q ss_pred             cccc-------------------cccchHHHHHHHHcCCC----CccCCCCCCCChhhhhe------ecCchhhc---cc
Q 036195           80 SICH-------------------EALAFPCLERIYVHGCP----SLRKLPFSLESGKRNGV------LIGEEEWW---NQ  127 (183)
Q Consensus        80 ~l~~-------------------~~~~~~~l~vLe~l~L~----~L~~~~~~~LSgGqk~~------i~~~~~w~---~~  127 (183)
                      .++.                   ........++++.+++.    ...+.++.+||+||+|+      ++.+|++|   ||
T Consensus       104 ~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEP  183 (260)
T PRK10744        104 TPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEP  183 (260)
T ss_pred             ccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCC
Confidence            1110                   00012345677888863    45678899999999983      47788887   89


Q ss_pred             ccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          128 LEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       128 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +...|+..+..+...+..+..  ..+|+++||+++.+...+|+++.++
T Consensus       184 t~~LD~~~~~~l~~~L~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~  229 (260)
T PRK10744        184 CSALDPISTGRIEELITELKQ--DYTVVIVTHNMQQAARCSDYTAFMY  229 (260)
T ss_pred             CccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHhCCEEEEEE
Confidence            999999999999999987753  4689999999999999999999996

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.91  E-value=1.4e-25  Score=171.19  Aligned_cols=150  Identities=13%  Similarity=-0.026  Sum_probs=110.6

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCC--CCCCcEEEEEecCccccccccchheeehhhhccCCCCccc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMF--SDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSI   81 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~--~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l   81 (183)
                      ++++++  |++++||+++|+||||||||||+++|+|+.  +|++|+|.++|+++...         ....++++++...+
T Consensus        20 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~---------~~~~i~~~~q~~~~   90 (192)
T cd03232          20 RQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKN---------FQRSTGYVEQQDVH   90 (192)
T ss_pred             eEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHH---------hhhceEEecccCcc
Confidence            457875  568999999999999999999999999986  48999999999865310         01234454544333


Q ss_pred             cccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCccccc
Q 036195           82 CHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVI  152 (183)
Q Consensus        82 ~~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~  152 (183)
                      +......+.......      .    .+||+||+|+      ++.+|+.+   ||....|+..+..+...+.....+ ..
T Consensus        91 ~~~~tv~~~l~~~~~------~----~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~-~~  159 (192)
T cd03232          91 SPNLTVREALRFSAL------L----RGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADS-GQ  159 (192)
T ss_pred             ccCCcHHHHHHHHHH------H----hcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHc-CC
Confidence            322222222111110      1    1899999983      47778876   899999999999999999877654 78


Q ss_pred             CCCCCCceee-eeecccceEEEEe
Q 036195          153 SIPQPSYTYE-ATIRPRYELICID  175 (183)
Q Consensus       153 ~~~~~~~~~~-~~~~~~~~~~~~~  175 (183)
                      +++++||+++ .+.+.||++++++
T Consensus       160 tiiivtH~~~~~~~~~~d~i~~l~  183 (192)
T cd03232         160 AILCTIHQPSASIFEKFDRLLLLK  183 (192)
T ss_pred             EEEEEEcCChHHHHhhCCEEEEEc
Confidence            9999999999 4789999999985

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=2.2e-25  Score=179.00  Aligned_cols=164  Identities=15%  Similarity=0.013  Sum_probs=119.2

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCC-----CCcEEEEEecCccccccccchheeehhhhccCCCC
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSD-----MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNL   78 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p-----~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l   78 (183)
                      +++|++  |++++||+++|+||||||||||+++|+|+++|     ++|+|.++|.++.....    .......++++++.
T Consensus        34 ~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~----~~~~~~~i~~v~q~  109 (276)
T PRK14271         34 KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD----VLEFRRRVGMLFQR  109 (276)
T ss_pred             EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccch----hHHHhhheEEeccC
Confidence            357775  56899999999999999999999999999985     79999999976542100    00001122333332


Q ss_pred             ccccc-----c----------ccc----hHHHHHHHHcCCCC----ccCCCCCCCChhhhhe------ecCchhhc---c
Q 036195           79 KSICH-----E----------ALA----FPCLERIYVHGCPS----LRKLPFSLESGKRNGV------LIGEEEWW---N  126 (183)
Q Consensus        79 ~~l~~-----~----------~~~----~~~l~vLe~l~L~~----L~~~~~~~LSgGqk~~------i~~~~~w~---~  126 (183)
                      ..++.     +          ...    ....++++.+++..    +.+.++.+||+||+|+      ++.+|+.+   |
T Consensus       110 ~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDE  189 (276)
T PRK14271        110 PNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDE  189 (276)
T ss_pred             CccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            21111     0          000    01235567777753    4567889999999983      36778776   8


Q ss_pred             cccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          127 QLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       127 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      |+...|+..+..+..++..+..+  .+|+++||+++.+...||+++.|+
T Consensus       190 Pt~~LD~~~~~~l~~~L~~~~~~--~tiiivsH~~~~~~~~~dri~~l~  236 (276)
T PRK14271        190 PTSALDPTTTEKIEEFIRSLADR--LTVIIVTHNLAQAARISDRAALFF  236 (276)
T ss_pred             CcccCCHHHHHHHHHHHHHHhcC--CEEEEEeCCHHHHHHhCCEEEEEE
Confidence            99999999999999998877643  799999999999999999999996

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.91  E-value=2.8e-25  Score=169.77  Aligned_cols=146  Identities=11%  Similarity=0.072  Sum_probs=110.4

Q ss_pred             cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccc------cc
Q 036195           11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSIC------HE   84 (183)
Q Consensus        11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~------~~   84 (183)
                      ||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++....         ...++++++...++      .+
T Consensus        20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~---------~~~~~~~~~~~~~~~~~tv~~~   90 (195)
T PRK13541         20 SITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA---------KPYCTYIGHNLGLKLEMTVFEN   90 (195)
T ss_pred             EEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh---------hhhEEeccCCcCCCccCCHHHH
Confidence            5679999999999999999999999999999999999999998764310         00122222211110      00


Q ss_pred             --------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecC
Q 036195           85 --------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITT  147 (183)
Q Consensus        85 --------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~  147 (183)
                              .......++++.+++....++++.+||+||+|+      ++.+|+++   ||+...|+.++..+..++....
T Consensus        91 l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~  170 (195)
T PRK13541         91 LKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKA  170 (195)
T ss_pred             HHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence                    011234667788899888899999999999983      37788887   8999999999999998887543


Q ss_pred             cccccCCCCCCceeeeeec
Q 036195          148 PQTVISIPQPSYTYEATIR  166 (183)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~  166 (183)
                      . ..++++++||+.+.+..
T Consensus       171 ~-~~~tiii~sh~~~~i~~  188 (195)
T PRK13541        171 N-SGGIVLLSSHLESSIKS  188 (195)
T ss_pred             h-CCCEEEEEeCCccccch
Confidence            3 37899999999987654

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.91  E-value=1.8e-25  Score=213.57  Aligned_cols=162  Identities=14%  Similarity=0.095  Sum_probs=128.4

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++++++  ++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++....     .. ....+++.|+...++.
T Consensus       943 k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~-----~~-~r~~IG~~pQ~~~L~~ 1016 (2272)
T TIGR01257       943 RPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNL-----DA-VRQSLGMCPQHNILFH 1016 (2272)
T ss_pred             ceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchH-----HH-HhhcEEEEecCCcCCC
Confidence            4688855  58999999999999999999999999999999999999998764310     00 0112333333222211


Q ss_pred             c-------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195           84 E-------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT  135 (183)
Q Consensus        84 ~-------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~  135 (183)
                      .                   ....++.++++.+++.+.+++++.+|||||||+      +.++|+.+   ||....|+..
T Consensus      1017 ~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~s 1096 (2272)
T TIGR01257      1017 HLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYS 1096 (2272)
T ss_pred             CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHH
Confidence            1                   011235678899999999999999999999983      47888887   9999999999


Q ss_pred             ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+..++...+ + .++|+++||+++++...|||+++++
T Consensus      1097 r~~l~~lL~~l~-~-g~TIIltTHdmdea~~laDrI~iL~ 1134 (2272)
T TIGR01257      1097 RRSIWDLLLKYR-S-GRTIIMSTHHMDEADLLGDRIAIIS 1134 (2272)
T ss_pred             HHHHHHHHHHHh-C-CCEEEEEECCHHHHHHhCCEEEEEE
Confidence            999999998884 3 7899999999999999999999986

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.91  E-value=2e-25  Score=192.07  Aligned_cols=166  Identities=13%  Similarity=0.090  Sum_probs=122.3

Q ss_pred             ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCC-CCcEEEEEecCccccccccchheeehhhhccCCCCc---
Q 036195            6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSD-MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK---   79 (183)
Q Consensus         6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p-~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~---   79 (183)
                      +++|+  ||++++||++||+||||||||||+|+|+|+.+| ++|+|+++|+++......   .. ....++++++..   
T Consensus       273 ~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~---~~-~~~~i~~v~q~~~~~  348 (490)
T PRK10938        273 RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETI---WD-IKKHIGYVSSSLHLD  348 (490)
T ss_pred             eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCH---HH-HHhhceEECHHHHhh
Confidence            34777  556899999999999999999999999998875 699999999754211000   00 000111111100   


Q ss_pred             -------------------cccc---cccchHHHHHHHHcCCCC-ccCCCCCCCChhhhhe------ecCchhhc---cc
Q 036195           80 -------------------SICH---EALAFPCLERIYVHGCPS-LRKLPFSLESGKRNGV------LIGEEEWW---NQ  127 (183)
Q Consensus        80 -------------------~l~~---~~~~~~~l~vLe~l~L~~-L~~~~~~~LSgGqk~~------i~~~~~w~---~~  127 (183)
                                         ..+.   ......+.++++.+++.. +.++++.+|||||+|+      +..+|+.+   ||
T Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEP  428 (490)
T PRK10938        349 YRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEP  428 (490)
T ss_pred             cccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCc
Confidence                               0000   000123567889999987 8899999999999983      47788887   99


Q ss_pred             ccccCcccccccccceeecCcccccCCCCCCceeeeeec-ccceEEEEe
Q 036195          128 LEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIR-PRYELICID  175 (183)
Q Consensus       128 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  175 (183)
                      +...|+..+..+..++..+..+...+|+++|||++++.. .||++++++
T Consensus       429 t~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~  477 (490)
T PRK10938        429 LQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVP  477 (490)
T ss_pred             cccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEec
Confidence            999999999999999998876634569999999999997 699999985

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=1.5e-25  Score=178.35  Aligned_cols=165  Identities=13%  Similarity=0.046  Sum_probs=119.9

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCC--C---CCcEEEEEecCccccccccchheeehhhhccCCCC
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFS--D---MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNL   78 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~--p---~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l   78 (183)
                      +++|++  |+|++||+++|+||||||||||+++|+|+++  |   ++|+|.++|+++.....  ..... ...++++++.
T Consensus        25 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~--~~~~~-~~~i~~v~q~  101 (259)
T PRK14274         25 HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKV--DLVEL-RKNIGMVFQK  101 (259)
T ss_pred             eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEcccccc--CHHHH-hhceEEEecC
Confidence            357775  5689999999999999999999999999987  3   69999999987642100  00000 0122333322


Q ss_pred             ccccc-----c--------------ccchHHHHHHHHcCCC----CccCCCCCCCChhhhhe------ecCchhhc---c
Q 036195           79 KSICH-----E--------------ALAFPCLERIYVHGCP----SLRKLPFSLESGKRNGV------LIGEEEWW---N  126 (183)
Q Consensus        79 ~~l~~-----~--------------~~~~~~l~vLe~l~L~----~L~~~~~~~LSgGqk~~------i~~~~~w~---~  126 (183)
                      ..++.     +              .......++++.+++.    ...+.++.+||+||+|+      ++.+|+.+   |
T Consensus       102 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDE  181 (259)
T PRK14274        102 GNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDE  181 (259)
T ss_pred             CcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            11111     0              0011234567777774    35678899999999983      47788887   8


Q ss_pred             cccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          127 QLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       127 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      |+...|+..+..+..++..+..  ..+++++||+++.+.+.||++++++
T Consensus       182 Pt~~LD~~~~~~l~~~l~~~~~--~~tiiivtH~~~~~~~~~d~i~~l~  228 (259)
T PRK14274        182 PTSALDPVSTRKIEELILKLKE--KYTIVIVTHNMQQAARVSDQTAFFY  228 (259)
T ss_pred             CcccCCHHHHHHHHHHHHHHhc--CCEEEEEEcCHHHHHHhCCEEEEEE
Confidence            9999999999999999988753  4789999999999999999999996

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=99.91  E-value=6.5e-26  Score=169.77  Aligned_cols=159  Identities=14%  Similarity=0.003  Sum_probs=122.0

Q ss_pred             cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEe-cCccccccccchheeehhhhccCCCCcccccc-----
Q 036195           11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYA-VSLQKKISVCSFILIRRAYFFKLPNLKSICHE-----   84 (183)
Q Consensus        11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g-~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~-----   84 (183)
                      ||++.+||.-+|||||||||||+|.+|+|-.+|+.|+++|+| .++.+..    -.......+++-.|..++|.+     
T Consensus        25 s~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~----e~~IAr~GIGRKFQ~PtVfe~ltV~e  100 (249)
T COG4674          25 SFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLP----EHRIARAGIGRKFQKPTVFENLTVRE  100 (249)
T ss_pred             EEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCC----HHHHHHhccCccccCCeehhhccHHH
Confidence            566999999999999999999999999999999999999999 6665421    111111222332222222211     


Q ss_pred             ----------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhh--e----ecCchhhc---ccccccCc
Q 036195           85 ----------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNG--V----LIGEEEWW---NQLEWDDE  133 (183)
Q Consensus        85 ----------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~--~----i~~~~~w~---~~l~~~d~  133 (183)
                                            ....++.++++..++.+.++.+...||-||||  +    ++.+|..+   ||+.++-+
T Consensus       101 NLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd  180 (249)
T COG4674         101 NLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTD  180 (249)
T ss_pred             HHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCCcEEEecCccCCCcH
Confidence                                  11224678899999999999999999999999  3    48889886   88888877


Q ss_pred             ccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          134 ATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +.....-.++..++..  ++|+.+.||+++|..++++|-|+-
T Consensus       181 ~Et~~taeLl~~la~~--hsilVVEHDM~Fvr~~A~~VTVlh  220 (249)
T COG4674         181 AETEKTAELLKSLAGK--HSILVVEHDMGFVREIADKVTVLH  220 (249)
T ss_pred             HHHHHHHHHHHHHhcC--ceEEEEeccHHHHHHhhheeEEEe
Confidence            6666666677776655  789999999999999999999984

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=1.6e-25  Score=177.43  Aligned_cols=165  Identities=12%  Similarity=-0.016  Sum_probs=119.0

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCC--C---CCcEEEEEecCccccccccchheeehhhhccCCCC
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFS--D---MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNL   78 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~--p---~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l   78 (183)
                      +++|+++  ++++||+++|+||||||||||+++|+|+.+  |   ++|+|.++|+++.....  . .......++++++.
T Consensus        19 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~--~-~~~~~~~i~~~~q~   95 (253)
T PRK14261         19 KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGA--D-VVALRRKIGMVFQR   95 (253)
T ss_pred             eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccccc--c-hhhhhceEEEEecC
Confidence            3577755  599999999999999999999999999976  3   48999999987643100  0 00000122333332


Q ss_pred             ccccc--------------c-----ccchHHHHHHHHcCCC----CccCCCCCCCChhhhhe------ecCchhhc---c
Q 036195           79 KSICH--------------E-----ALAFPCLERIYVHGCP----SLRKLPFSLESGKRNGV------LIGEEEWW---N  126 (183)
Q Consensus        79 ~~l~~--------------~-----~~~~~~l~vLe~l~L~----~L~~~~~~~LSgGqk~~------i~~~~~w~---~  126 (183)
                      ..++.              .     .......++++.+++.    ...+.++.+||+||+|+      ++.+|+.+   |
T Consensus        96 ~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE  175 (253)
T PRK14261         96 PNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDE  175 (253)
T ss_pred             CccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            21110              0     0011234556666663    34678899999999983      47788887   9


Q ss_pred             cccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          127 QLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       127 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      |+...|+..+..+..++..+..+  .+++++||+++.+...+|+++.|+
T Consensus       176 P~~gLD~~~~~~l~~~l~~~~~~--~tvii~sh~~~~~~~~~d~v~~l~  222 (253)
T PRK14261        176 PCSALDPIATAKIEDLIEDLKKE--YTVIIVTHNMQQAARVSDYTGFMY  222 (253)
T ss_pred             CcccCCHHHHHHHHHHHHHHhhC--ceEEEEEcCHHHHHhhCCEEEEEE
Confidence            99999999999999999887643  799999999999999999999986

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=3.3e-25  Score=175.49  Aligned_cols=165  Identities=13%  Similarity=0.022  Sum_probs=117.5

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCC-----CcEEEEEecCccccccccchheeehhhhccCCCC
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDM-----SHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNL   78 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~-----~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l   78 (183)
                      +++++++  ++++||+++|+||||||||||+++|+|+++|+     +|+|.++|.++.....  . .......++++++.
T Consensus        17 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~--~-~~~~~~~i~~~~q~   93 (252)
T PRK14272         17 KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRV--D-PVAMRRRVGMVFQK   93 (252)
T ss_pred             EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCcc--C-HHHhhceeEEEecc
Confidence            4678755  58999999999999999999999999999874     8999999987642100  0 00000123333332


Q ss_pred             ccccccc----------------cc----hHHHHHHHHcCC----CCccCCCCCCCChhhhhe------ecCchhhc---
Q 036195           79 KSICHEA----------------LA----FPCLERIYVHGC----PSLRKLPFSLESGKRNGV------LIGEEEWW---  125 (183)
Q Consensus        79 ~~l~~~~----------------~~----~~~l~vLe~l~L----~~L~~~~~~~LSgGqk~~------i~~~~~w~---  125 (183)
                      ..++...                ..    ....++++.+++    ....+.++.+||+||+|+      +..+|+.+   
T Consensus        94 ~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD  173 (252)
T PRK14272         94 PNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMD  173 (252)
T ss_pred             CccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            2111110                00    012223444443    345678899999999983      37788887   


Q ss_pred             ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          126 NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       126 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ||+...|+..+..+..++..+..  ..+++++||+++.+...||+++.++
T Consensus       174 EP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~  221 (252)
T PRK14272        174 EPTSALDPASTARIEDLMTDLKK--VTTIIIVTHNMHQAARVSDTTSFFL  221 (252)
T ss_pred             CCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHhCCEEEEEE
Confidence            89999999999999999988753  4889999999999999999999995

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.91  E-value=3.3e-25  Score=165.51  Aligned_cols=137  Identities=16%  Similarity=0.069  Sum_probs=105.4

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|+++  ++.+||+++|+||||||||||+++|+|+++|++|+|.+++.                ..++++++...++ 
T Consensus        14 ~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~----------------~~i~~~~q~~~~~-   76 (166)
T cd03223          14 RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG----------------EDLLFLPQRPYLP-   76 (166)
T ss_pred             CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC----------------ceEEEECCCCccc-
Confidence            3577754  58999999999999999999999999999999999998763                1234444433221 


Q ss_pred             cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCcccccCC
Q 036195           84 EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISI  154 (183)
Q Consensus        84 ~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~  154 (183)
                            ..++.+++...     ++.+||+||+|+      +..+|+.+   ||+...|+..+..+..++...    ..++
T Consensus        77 ------~~tv~~nl~~~-----~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~----~~ti  141 (166)
T cd03223          77 ------LGTLREQLIYP-----WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL----GITV  141 (166)
T ss_pred             ------cccHHHHhhcc-----CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh----CCEE
Confidence                  12333433322     578999999983      47788887   899999999999998888754    3789


Q ss_pred             CCCCceeeeeecccceEEEEe
Q 036195          155 PQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +++|||++. .+.||+++.++
T Consensus       142 iivsh~~~~-~~~~d~i~~l~  161 (166)
T cd03223         142 ISVGHRPSL-WKFHDRVLDLD  161 (166)
T ss_pred             EEEeCChhH-HhhCCEEEEEc
Confidence            999999985 57999998874

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=99.91  E-value=1.7e-25  Score=179.33  Aligned_cols=161  Identities=17%  Similarity=0.101  Sum_probs=121.4

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|+++  +|++||+++|+||||||||||+++|+|+++ ++|+|+++|.++....    ...+ ...++++|+...++.
T Consensus        17 ~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~----~~~l-r~~i~~v~q~~~lf~   90 (275)
T cd03289          17 NAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVP----LQKW-RKAFGVIPQKVFIFS   90 (275)
T ss_pred             CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCC----HHHH-hhhEEEECCCcccch
Confidence            3578755  599999999999999999999999999997 8999999998764310    0000 123344444333322


Q ss_pred             -----c------ccchHHHHHHHHcCCCCccCCCCCC-----------CChhhhhe------ecCchhhc---ccccccC
Q 036195           84 -----E------ALAFPCLERIYVHGCPSLRKLPFSL-----------ESGKRNGV------LIGEEEWW---NQLEWDD  132 (183)
Q Consensus        84 -----~------~~~~~~l~vLe~l~L~~L~~~~~~~-----------LSgGqk~~------i~~~~~w~---~~l~~~d  132 (183)
                           +      .......++++.+++....+..+..           ||+||+|+      +..+|+.+   ||....|
T Consensus        91 ~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD  170 (275)
T cd03289          91 GTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLD  170 (275)
T ss_pred             hhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCC
Confidence                 1      1122456778888998777777766           99999983      47788876   8999999


Q ss_pred             cccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          133 EATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +.++..++..+.... + .++|+++||+++++.. |||+++++
T Consensus       171 ~~~~~~l~~~l~~~~-~-~~tii~isH~~~~i~~-~dri~vl~  210 (275)
T cd03289         171 PITYQVIRKTLKQAF-A-DCTVILSEHRIEAMLE-CQRFLVIE  210 (275)
T ss_pred             HHHHHHHHHHHHHhc-C-CCEEEEEECCHHHHHh-CCEEEEec
Confidence            999999999998653 3 6899999999988765 99999996

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=2.3e-25  Score=179.61  Aligned_cols=163  Identities=10%  Similarity=0.000  Sum_probs=118.9

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCC-----CCCcEEEEEecCccccccccchheeehhhhccCCCC
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFS-----DMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNL   78 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~-----p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l   78 (183)
                      +++|++  |+|.+||+++|+||||||||||+++|+|+++     |++|+|.++|.++.....  .... ....++++++.
T Consensus        52 ~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~--~~~~-~~~~i~~v~q~  128 (285)
T PRK14254         52 EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADV--DPVA-LRRRIGMVFQK  128 (285)
T ss_pred             EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc--chHh-hhccEEEEecC
Confidence            357875  5689999999999999999999999999987     689999999986532100  0000 00122333332


Q ss_pred             cccccc-----------------ccchHHHHHHHHcCCC----CccCCCCCCCChhhhhe------ecCchhhc---ccc
Q 036195           79 KSICHE-----------------ALAFPCLERIYVHGCP----SLRKLPFSLESGKRNGV------LIGEEEWW---NQL  128 (183)
Q Consensus        79 ~~l~~~-----------------~~~~~~l~vLe~l~L~----~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l  128 (183)
                      ..++..                 .....+.++++.+++.    ...+.++.+||+||+|+      +..+|+.+   ||.
T Consensus       129 ~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPt  208 (285)
T PRK14254        129 PNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPA  208 (285)
T ss_pred             CccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence            211110                 0011345667777774    35678899999999983      37788887   999


Q ss_pred             cccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEE
Q 036195          129 EWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELIC  173 (183)
Q Consensus       129 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (183)
                      ...|+..+..+...+..+..+  .+++++|||++.+.+.||++++
T Consensus       209 s~LD~~~~~~l~~~L~~~~~~--~tiii~tH~~~~i~~~~dri~v  251 (285)
T PRK14254        209 SALDPVATSKIEDLIEELAEE--YTVVIVTHNMQQAARISDKTAV  251 (285)
T ss_pred             CCCCHHHHHHHHHHHHHHhcC--CEEEEEeCCHHHHHhhcCEEEE
Confidence            999999999999999888654  6899999999999999999764

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=2.6e-25  Score=178.36  Aligned_cols=164  Identities=13%  Similarity=0.000  Sum_probs=119.7

Q ss_pred             ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCC-----CCcEEEEEecCccccccccchheeehhhhccCCCCc
Q 036195            7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSD-----MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK   79 (183)
Q Consensus         7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p-----~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~   79 (183)
                      ++|++  |++++||+++|+||||||||||+++|+|+++|     ++|+|.++|.++.....  . .......++++++..
T Consensus        34 ~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~--~-~~~~~~~i~~v~q~~  110 (274)
T PRK14265         34 LALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQI--N-SVKLRRQVGMVFQRP  110 (274)
T ss_pred             EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccc--h-hHHHhhcEEEEccCC
Confidence            57774  56899999999999999999999999999863     69999999987642100  0 000011233444332


Q ss_pred             cccc-----cc------------cchHHHHHHHHcCC----CCccCCCCCCCChhhhhe------ecCchhhc---cccc
Q 036195           80 SICH-----EA------------LAFPCLERIYVHGC----PSLRKLPFSLESGKRNGV------LIGEEEWW---NQLE  129 (183)
Q Consensus        80 ~l~~-----~~------------~~~~~l~vLe~l~L----~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~  129 (183)
                      .++.     +.            ......++++.+++    ....+.++.+||+||+|+      +..+|+.+   ||+.
T Consensus       111 ~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~  190 (274)
T PRK14265        111 NPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCS  190 (274)
T ss_pred             ccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcc
Confidence            2211     00            01112345666665    345678899999999983      47788887   8999


Q ss_pred             ccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          130 WDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       130 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ..|+..+..+..++..+..  ..+|+++|||++.+.+.||++++|+
T Consensus       191 ~LD~~~~~~l~~~L~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~  234 (274)
T PRK14265        191 ALDPISTRQVEELCLELKE--QYTIIMVTHNMQQASRVADWTAFFN  234 (274)
T ss_pred             cCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhCCEEEEEe
Confidence            9999999999999988764  3789999999999999999999996

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=99.91  E-value=6.7e-25  Score=168.68  Aligned_cols=157  Identities=11%  Similarity=0.015  Sum_probs=108.3

Q ss_pred             cccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcc---ccccccchheeehhhhccCCCCccc
Q 036195            7 PHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ---KKISVCSFILIRRAYFFKLPNLKSI   81 (183)
Q Consensus         7 ~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~---~~~~~~~~~~l~~~~lg~lp~l~~l   81 (183)
                      ++|+++  ++++||+++|+||||||||||+++|+|+.+|++|+|.++|. +.   .....+..+..+.+...  .     
T Consensus        19 ~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~-i~~~~q~~~l~~~t~~enl~~~--~-----   90 (204)
T cd03250          19 FTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGS-IAYVSQEPWIQNGTIRENILFG--K-----   90 (204)
T ss_pred             ceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCE-EEEEecCchhccCcHHHHhccC--C-----
Confidence            688855  59999999999999999999999999999999999999872 11   00000011111111110  0     


Q ss_pred             cccccchHHHHHHHHcC-----------CCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccccccccc
Q 036195           82 CHEALAFPCLERIYVHG-----------CPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSS  141 (183)
Q Consensus        82 ~~~~~~~~~l~vLe~l~-----------L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~  141 (183)
                        ........++++.++           +....+.++.+||+||+|+      ++.+|+.+   ||+...|+..+..+..
T Consensus        91 --~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~  168 (204)
T cd03250          91 --PFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFE  168 (204)
T ss_pred             --CcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHH
Confidence              000111222222222           2334566788999999983      48888887   8999999998887776


Q ss_pred             -ceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          142 -KLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       142 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                       ++.....+ ..+++++||+.+.+.. ||+++.++
T Consensus       169 ~ll~~~~~~-~~tvi~~sh~~~~~~~-~d~i~~l~  201 (204)
T cd03250         169 NCILGLLLN-NKTRILVTHQLQLLPH-ADQIVVLD  201 (204)
T ss_pred             HHHHHhccC-CCEEEEEeCCHHHHhh-CCEEEEEe
Confidence             45544444 7899999999999988 99999885

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=99.91  E-value=1e-25  Score=184.71  Aligned_cols=147  Identities=14%  Similarity=0.062  Sum_probs=115.5

Q ss_pred             EEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc-----------------
Q 036195           22 LYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE-----------------   84 (183)
Q Consensus        22 liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~-----------------   84 (183)
                      |+||||||||||+++|+|+++|++|+|.++|+++....     +  ....++++++...++..                 
T Consensus         1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~-----~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~   73 (325)
T TIGR01187         1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVP-----P--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVP   73 (325)
T ss_pred             CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCC-----H--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCC
Confidence            68999999999999999999999999999998764310     0  00122333332211111                 


Q ss_pred             --ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCcccccC
Q 036195           85 --ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVIS  153 (183)
Q Consensus        85 --~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~  153 (183)
                        .......++++.+++..+.++++.+|||||+|+      ++.+|+.+   ||+...|+..+..+..++..+..+...+
T Consensus        74 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~t  153 (325)
T TIGR01187        74 RAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGIT  153 (325)
T ss_pred             HHHHHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCE
Confidence              001234678899999999999999999999983      47788887   8999999999999999999887766889


Q ss_pred             CCCCCceeeeeecccceEEEEe
Q 036195          154 IPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ++++|||++++++.||++++++
T Consensus       154 iiivTHd~~e~~~~~d~i~vl~  175 (325)
T TIGR01187       154 FVFVTHDQEEAMTMSDRIAIMR  175 (325)
T ss_pred             EEEEeCCHHHHHHhCCEEEEEE
Confidence            9999999999999999999996

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=2.2e-25  Score=177.39  Aligned_cols=166  Identities=12%  Similarity=-0.018  Sum_probs=120.6

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCC-----CCcEEEEEecCccccccccchheeehhhhccCCCC
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSD-----MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNL   78 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p-----~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l   78 (183)
                      +++++++  ++++||+++|+|+||||||||+++|+|+++|     ++|+|.++|+++.....  .... ....++++++.
T Consensus        20 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~--~~~~-~~~~i~~v~q~   96 (259)
T PRK14260         20 SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRI--NINR-LRRQIGMVFQR   96 (259)
T ss_pred             eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEecccccc--chHh-hhhheEEEecc
Confidence            3577754  5899999999999999999999999999985     48999999986632100  0000 00122333332


Q ss_pred             ccccc-----c-------------cc-chHHHHHHHHcCC----CCccCCCCCCCChhhhhe------ecCchhhc---c
Q 036195           79 KSICH-----E-------------AL-AFPCLERIYVHGC----PSLRKLPFSLESGKRNGV------LIGEEEWW---N  126 (183)
Q Consensus        79 ~~l~~-----~-------------~~-~~~~l~vLe~l~L----~~L~~~~~~~LSgGqk~~------i~~~~~w~---~  126 (183)
                      ..++.     +             .. .....++++.+++    ....+.++.+||+||+|+      ++.+|+.+   |
T Consensus        97 ~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE  176 (259)
T PRK14260         97 PNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDE  176 (259)
T ss_pred             cccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            21111     0             00 1123456677776    346778899999999983      47788887   8


Q ss_pred             cccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEee
Q 036195          127 QLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICIDV  176 (183)
Q Consensus       127 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (183)
                      |....|+.++..+..++..+..+  .+++++||+++.+...||++++++-
T Consensus       177 Pt~~LD~~~~~~l~~~l~~~~~~--~tiii~tH~~~~i~~~~d~i~~l~~  224 (259)
T PRK14260        177 PCSALDPIATMKVEELIHSLRSE--LTIAIVTHNMQQATRVSDFTAFFST  224 (259)
T ss_pred             CCccCCHHHHHHHHHHHHHHhcC--CEEEEEeCCHHHHHHhcCeEEEEec
Confidence            99999999999999999887543  7999999999999999999999973

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=99.91  E-value=1.3e-25  Score=173.46  Aligned_cols=159  Identities=18%  Similarity=0.063  Sum_probs=118.7

Q ss_pred             ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcc---
Q 036195            6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKS---   80 (183)
Q Consensus         6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~---   80 (183)
                      ..+|+  ||++.+||.+||||+||||||||+|+|+|.++|++|+|.+.|+-..-          -.+..++-|++..   
T Consensus        40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~l----------i~lg~Gf~pelTGreN  109 (249)
T COG1134          40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPL----------IELGAGFDPELTGREN  109 (249)
T ss_pred             EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehh----------hhcccCCCcccchHHH
Confidence            45676  55699999999999999999999999999999999999999963211          0022222232211   


Q ss_pred             ---------ccccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccc
Q 036195           81 ---------ICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSK  142 (183)
Q Consensus        81 ---------l~~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~  142 (183)
                               +..........++++..++.++.++|+..+|.||+-+      +.-+|+-+   |-+.--|++=+..-...
T Consensus       110 i~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~r  189 (249)
T COG1134         110 IYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLER  189 (249)
T ss_pred             HHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHH
Confidence                     1112223456788999999999999999999999752      36677775   44666676666665666


Q ss_pred             eeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          143 LIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +.....+. ..|+++|||+..+-+.||++|-++
T Consensus       190 l~e~~~~~-~tiv~VSHd~~~I~~~Cd~~i~l~  221 (249)
T COG1134         190 LNELVEKN-KTIVLVSHDLGAIKQYCDRAIWLE  221 (249)
T ss_pred             HHHHHHcC-CEEEEEECCHHHHHHhcCeeEEEe
Confidence            66665553 899999999999999999999886

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.91  E-value=6.6e-25  Score=191.41  Aligned_cols=165  Identities=13%  Similarity=-0.011  Sum_probs=117.4

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecC-c----cccccccchheeehhhhccCC--
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVS-L----QKKISVCSFILIRRAYFFKLP--   76 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~-~----~~~~~~~~~~~l~~~~lg~lp--   76 (183)
                      +++|+++  +|++||+++|+||||||||||+++|+|+++|++|+|.+++.. +    +........+..+.+..+...  
T Consensus        20 ~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~   99 (556)
T PRK11819         20 KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDPEKTVRENVEEGVAEVK   99 (556)
T ss_pred             CeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCcHHHHHHHhhHHHH
Confidence            4688754  699999999999999999999999999999999999986421 1    110000011122211111000  


Q ss_pred             -------CC---cccc----------------------ccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------e
Q 036195           77 -------NL---KSIC----------------------HEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------L  118 (183)
Q Consensus        77 -------~l---~~l~----------------------~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i  118 (183)
                             ..   ....                      .......+.++++.+++.. .++++.+|||||+|+      +
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~LSgGqkqrv~la~al  178 (556)
T PRK11819        100 AALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP-WDAKVTKLSGGERRRVALCRLL  178 (556)
T ss_pred             HHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc-ccCchhhcCHHHHHHHHHHHHH
Confidence                   00   0000                      0001224566788888864 688999999999983      4


Q ss_pred             cCchhhc---ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          119 IGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       119 ~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ..+|+.+   ||...-|+..+..+..++....    .+|+++|||++.+...||++++|+
T Consensus       179 ~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~----~tviiisHd~~~~~~~~d~i~~l~  234 (556)
T PRK11819        179 LEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP----GTVVAVTHDRYFLDNVAGWILELD  234 (556)
T ss_pred             hCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC----CeEEEEeCCHHHHHhhcCeEEEEe
Confidence            7788887   8999999999999988887653    489999999999999999999998

>PRK13409 putative ATPase RIL; Provisional

Probab=99.91  E-value=1.4e-25  Score=196.23  Aligned_cols=163  Identities=12%  Similarity=0.056  Sum_probs=123.4

Q ss_pred             ccccce-ecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEE-----------EEecCccccccccchheeehhhhccC
Q 036195            8 HLRYIE-DDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFA-----------IYAVSLQKKISVCSFILIRRAYFFKL   75 (183)
Q Consensus         8 ~l~~l~-i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~-----------~~g~~~~~~~~~~~~~~l~~~~lg~l   75 (183)
                      +|+++. +++||++||+||||||||||+|+|+|+++|++|+|.           ++|.++++...  ... .....+++.
T Consensus        89 ~L~~l~~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~--~~~-~~~~~~~~~  165 (590)
T PRK13409         89 KLYGLPIPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFK--KLY-NGEIKVVHK  165 (590)
T ss_pred             eEecCCcCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHH--HHh-ccCcceeec
Confidence            677664 899999999999999999999999999999999997           88877643100  000 000111111


Q ss_pred             CCC----cccc-----cc----ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCc
Q 036195           76 PNL----KSIC-----HE----ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDE  133 (183)
Q Consensus        76 p~l----~~l~-----~~----~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~  133 (183)
                      ++.    ..++     ..    .......++++.+++....++++.+|||||+|+      ++.+|+.+   ||....|+
T Consensus       166 ~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~  245 (590)
T PRK13409        166 PQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDI  245 (590)
T ss_pred             ccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCH
Confidence            111    1010     00    011235678899999999999999999999983      36788886   89999999


Q ss_pred             ccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          134 ATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ..+..+..++..+..  ..+++++|||++.+...+|+|++++
T Consensus       246 ~~~~~l~~~i~~l~~--g~tvIivsHd~~~l~~~~D~v~vl~  285 (590)
T PRK13409        246 RQRLNVARLIRELAE--GKYVLVVEHDLAVLDYLADNVHIAY  285 (590)
T ss_pred             HHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEe
Confidence            999999999988755  7889999999999999999999986

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=99.90  E-value=2.2e-25  Score=176.49  Aligned_cols=164  Identities=12%  Similarity=-0.008  Sum_probs=118.0

Q ss_pred             ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCC--CC---CCcEEEEEecCccccccccchheeehhhhccCCCCc
Q 036195            7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMF--SD---MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK   79 (183)
Q Consensus         7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~--~p---~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~   79 (183)
                      +++++  |++++||+++|+||||||||||+++|+|+.  +|   ++|+|.++|.++.....  ..... ...++++++..
T Consensus        19 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~--~~~~~-~~~i~~v~q~~   95 (252)
T PRK14239         19 KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRT--DTVDL-RKEIGMVFQQP   95 (252)
T ss_pred             eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCccc--chHhh-hhcEEEEecCC
Confidence            57775  568999999999999999999999999995  46   59999999986632100  00000 01223333322


Q ss_pred             cccc-----c--------------ccchHHHHHHHHcCCC----CccCCCCCCCChhhhhe------ecCchhhc---cc
Q 036195           80 SICH-----E--------------ALAFPCLERIYVHGCP----SLRKLPFSLESGKRNGV------LIGEEEWW---NQ  127 (183)
Q Consensus        80 ~l~~-----~--------------~~~~~~l~vLe~l~L~----~L~~~~~~~LSgGqk~~------i~~~~~w~---~~  127 (183)
                      .++.     +              .......++++.+++.    ...+.++.+||+||+|+      +..+|+.+   ||
T Consensus        96 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP  175 (252)
T PRK14239         96 NPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEP  175 (252)
T ss_pred             ccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence            1111     0              0011234456677653    35678899999999983      36788886   89


Q ss_pred             ccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          128 LEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       128 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +...|+..+..+..++..+..  ..+|+++|||++.+.+.||++++++
T Consensus       176 t~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~  221 (252)
T PRK14239        176 TSALDPISAGKIEETLLGLKD--DYTMLLVTRSMQQASRISDRTGFFL  221 (252)
T ss_pred             ccccCHHHHHHHHHHHHHHhh--CCeEEEEECCHHHHHHhCCEEEEEE
Confidence            999999999999999988753  3789999999999999999999996

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=99.90  E-value=3.2e-25  Score=176.96  Aligned_cols=164  Identities=12%  Similarity=-0.002  Sum_probs=118.0

Q ss_pred             cccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCC-----CCCcEEEEEecCccccccccchheeehhhhccCCCCc
Q 036195            7 PHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFS-----DMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK   79 (183)
Q Consensus         7 ~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~-----p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~   79 (183)
                      ++|+  ||++++||+++|+||||||||||+++|+|+++     |++|+|.++|.++.....  .... ....++++++..
T Consensus        24 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~--~~~~-~~~~i~~v~q~~  100 (264)
T PRK14243         24 LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDV--DPVE-VRRRIGMVFQKP  100 (264)
T ss_pred             EEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEcccccc--ChHH-HhhhEEEEccCC
Confidence            5777  45689999999999999999999999999986     489999999976631000  0000 001123333221


Q ss_pred             cccc-----c------------ccchHHHHHHHHcCCC----CccCCCCCCCChhhhhe------ecCchhhc---cccc
Q 036195           80 SICH-----E------------ALAFPCLERIYVHGCP----SLRKLPFSLESGKRNGV------LIGEEEWW---NQLE  129 (183)
Q Consensus        80 ~l~~-----~------------~~~~~~l~vLe~l~L~----~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~  129 (183)
                      .++.     +            .......++++.+++.    ...+.++.+||+||+|+      +..+|+.+   ||..
T Consensus       101 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~  180 (264)
T PRK14243        101 NPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCS  180 (264)
T ss_pred             ccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence            1110     0            0011223445666653    35678899999999983      36788887   8999


Q ss_pred             ccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          130 WDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       130 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ..|+..+..+..++..+..+  .+|+++||+++.+...||++++|+
T Consensus       181 ~LD~~~~~~l~~~L~~~~~~--~tvi~vtH~~~~~~~~~d~v~~l~  224 (264)
T PRK14243        181 ALDPISTLRIEELMHELKEQ--YTIIIVTHNMQQAARVSDMTAFFN  224 (264)
T ss_pred             cCCHHHHHHHHHHHHHHhcC--CEEEEEecCHHHHHHhCCEEEEEe
Confidence            99999999999999887654  689999999999999999999997

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.90  E-value=2.3e-25  Score=162.67  Aligned_cols=117  Identities=16%  Similarity=0.056  Sum_probs=99.4

Q ss_pred             ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195            7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE   84 (183)
Q Consensus         7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~   84 (183)
                      +++++  |++++||+++|+||||||||||+++|+|+++|++|+|+++|.                ..++++++       
T Consensus        14 ~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~----------------~~i~~~~~-------   70 (144)
T cd03221          14 LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST----------------VKIGYFEQ-------   70 (144)
T ss_pred             eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe----------------EEEEEEcc-------
Confidence            57764  568999999999999999999999999999999999999874                12333332       


Q ss_pred             ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCcccccCCC
Q 036195           85 ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIP  155 (183)
Q Consensus        85 ~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~  155 (183)
                                               ||+||+|+      +..+|+.+   ||+...|+..+..+..++..+    ..+++
T Consensus        71 -------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~----~~til  121 (144)
T cd03221          71 -------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY----PGTVI  121 (144)
T ss_pred             -------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc----CCEEE
Confidence                                     99999883      47788886   899999999999998888755    25899


Q ss_pred             CCCceeeeeecccceEEEEe
Q 036195          156 QPSYTYEATIRPRYELICID  175 (183)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ++||+++.+.+.||++++++
T Consensus       122 ~~th~~~~~~~~~d~v~~l~  141 (144)
T cd03221         122 LVSHDRYFLDQVATKIIELE  141 (144)
T ss_pred             EEECCHHHHHHhCCEEEEEe
Confidence            99999999999999999985

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=5.3e-25  Score=191.02  Aligned_cols=159  Identities=13%  Similarity=0.029  Sum_probs=117.9

Q ss_pred             ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccc----ccc--cc-chheeehhhhccCC
Q 036195            6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQK----KIS--VC-SFILIRRAYFFKLP   76 (183)
Q Consensus         6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~----~~~--~~-~~~~l~~~~lg~lp   76 (183)
                      +++|+  ||++++||+++|+||||||||||+++|+|+++|++|+|.+++...-.    ...  +. ..+..+.+  ... 
T Consensus       332 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~--~~~-  408 (530)
T PRK15064        332 GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWM--SQW-  408 (530)
T ss_pred             ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHH--HHh-
Confidence            35777  45699999999999999999999999999999999999998742100    000  00 00111100  000 


Q ss_pred             CCccccccccchHHHHHHHHcCCC-CccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeec
Q 036195           77 NLKSICHEALAFPCLERIYVHGCP-SLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIIT  146 (183)
Q Consensus        77 ~l~~l~~~~~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~  146 (183)
                        .  ..........++++.+++. ...++++.+|||||+|+      +..+|+.+   ||....|+..+..+..++...
T Consensus       409 --~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~  484 (530)
T PRK15064        409 --R--QEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY  484 (530)
T ss_pred             --c--cCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC
Confidence              0  0011123456789999984 67899999999999983      37788887   899999999999998888765


Q ss_pred             CcccccCCCCCCceeeeeecccceEEEEe
Q 036195          147 TPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                          ..+++++|||.+++...||++++|+
T Consensus       485 ----~~tvi~vsHd~~~~~~~~d~i~~l~  509 (530)
T PRK15064        485 ----EGTLIFVSHDREFVSSLATRIIEIT  509 (530)
T ss_pred             ----CCEEEEEeCCHHHHHHhCCEEEEEE
Confidence                2489999999999999999999996

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=5.3e-25  Score=174.19  Aligned_cols=165  Identities=15%  Similarity=0.026  Sum_probs=118.8

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCC-----CCcEEEEEecCccccccccchheeehhhhccCCCC
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSD-----MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNL   78 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p-----~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l   78 (183)
                      ++++++  |++++||+++|+||||||||||+++|+|+++|     ++|+|.++|.++.....  .... ....++++++.
T Consensus        16 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~--~~~~-~~~~i~~~~q~   92 (250)
T PRK14262         16 KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQL--DVTE-YRKKVGMVFQK   92 (250)
T ss_pred             ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchh--hHHH-hhhhEEEEecC
Confidence            467774  56899999999999999999999999999874     89999999976532100  0000 00112222222


Q ss_pred             ccccc--------------c-----ccchHHHHHHHHcCCC----CccCCCCCCCChhhhhe------ecCchhhc---c
Q 036195           79 KSICH--------------E-----ALAFPCLERIYVHGCP----SLRKLPFSLESGKRNGV------LIGEEEWW---N  126 (183)
Q Consensus        79 ~~l~~--------------~-----~~~~~~l~vLe~l~L~----~L~~~~~~~LSgGqk~~------i~~~~~w~---~  126 (183)
                      ..++.              .     .......++++.+++.    .+.+.++.+||+||+|+      +..+|+.+   |
T Consensus        93 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDE  172 (250)
T PRK14262         93 PTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDE  172 (250)
T ss_pred             CccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence            11110              0     0011234556777764    34788899999999983      36778876   8


Q ss_pred             cccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          127 QLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       127 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      |....|+.++..+..++..+..  ..+++++||+++.+...||++++++
T Consensus       173 P~~~LD~~~~~~l~~~l~~~~~--~~tili~sH~~~~~~~~~d~i~~l~  219 (250)
T PRK14262        173 PTSALDPIATQRIEKLLEELSE--NYTIVIVTHNIGQAIRIADYIAFMY  219 (250)
T ss_pred             CccccCHHHHHHHHHHHHHHhc--CcEEEEEeCCHHHHHHhCCEEEEEE
Confidence            9999999999999999988753  4789999999999999999999986

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=99.90  E-value=5.1e-25  Score=176.49  Aligned_cols=165  Identities=12%  Similarity=-0.008  Sum_probs=120.2

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCC-----CCCcEEEEEecCccccccccchheeehhhhccCCCC
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFS-----DMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNL   78 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~-----p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l   78 (183)
                      +++|++  |++++||+++|+||||||||||+++|+|+++     |++|+|.++|.++.....  ..... ...++++++.
T Consensus        38 ~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~--~~~~~-~~~i~~v~q~  114 (272)
T PRK14236         38 KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV--DVAEL-RRRVGMVFQR  114 (272)
T ss_pred             eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc--CHHHH-hccEEEEecC
Confidence            357775  5689999999999999999999999999987     489999999987642100  00000 0122233322


Q ss_pred             ccccc-----c---------c-----cchHHHHHHHHcCCC----CccCCCCCCCChhhhhe------ecCchhhc---c
Q 036195           79 KSICH-----E---------A-----LAFPCLERIYVHGCP----SLRKLPFSLESGKRNGV------LIGEEEWW---N  126 (183)
Q Consensus        79 ~~l~~-----~---------~-----~~~~~l~vLe~l~L~----~L~~~~~~~LSgGqk~~------i~~~~~w~---~  126 (183)
                      ..++.     +         .     ......++++.+++.    ...+.++.+||+||+|+      +..+|+.+   |
T Consensus       115 ~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDE  194 (272)
T PRK14236        115 PNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDE  194 (272)
T ss_pred             CccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeC
Confidence            11111     0         0     011244566777774    35678899999999983      37788887   8


Q ss_pred             cccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          127 QLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       127 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      |+...|+.++..+..++..+..  ..+++++||+++.+.+.||++++++
T Consensus       195 Pt~gLD~~~~~~l~~~L~~~~~--~~tiiivtH~~~~~~~~~d~i~~l~  241 (272)
T PRK14236        195 PTSALDPISTLKIEELITELKS--KYTIVIVTHNMQQAARVSDYTAFMY  241 (272)
T ss_pred             CcccCCHHHHHHHHHHHHHHHh--CCeEEEEeCCHHHHHhhCCEEEEEE
Confidence            9999999999999999988854  4789999999999999999999997

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=99.90  E-value=8.7e-25  Score=169.67  Aligned_cols=167  Identities=10%  Similarity=-0.093  Sum_probs=115.1

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      ++++++  |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...... .........++++++...++.
T Consensus        14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~-~~~~~~~~~i~~~~q~~~~~~   92 (218)
T cd03290          14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFE-ATRSRNRYSVAYAAQKPWLLN   92 (218)
T ss_pred             CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCccccccccc-ccchhhcceEEEEcCCCcccc
Confidence            457775  45899999999999999999999999999999999999998865421000 000000112334444322221


Q ss_pred             c-----------ccchHHHHHHHHcCCCCc-----------cCCCCCCCChhhhhe------ecCchhhc---ccccccC
Q 036195           84 E-----------ALAFPCLERIYVHGCPSL-----------RKLPFSLESGKRNGV------LIGEEEWW---NQLEWDD  132 (183)
Q Consensus        84 ~-----------~~~~~~l~vLe~l~L~~L-----------~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d  132 (183)
                      .           .......++++.+++...           .+.++..||+||+|+      ++.+|+++   ||....|
T Consensus        93 ~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD  172 (218)
T cd03290          93 ATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALD  172 (218)
T ss_pred             ccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccC
Confidence            0           001122344555554321           345788999999983      47788886   8999999


Q ss_pred             ccccccccc--ceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          133 EATKHVFSS--KLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       133 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+..+..  ++..+..+ ..+++++||+.+.+ ..||++++++
T Consensus       173 ~~~~~~l~~~~ll~~~~~~-~~tii~~sH~~~~~-~~~d~i~~l~  215 (218)
T cd03290         173 IHLSDHLMQEGILKFLQDD-KRTLVLVTHKLQYL-PHADWIIAMK  215 (218)
T ss_pred             HHHHHHHHHHHHHHHHhcC-CCEEEEEeCChHHH-hhCCEEEEec
Confidence            998888877  66655443 78999999999987 5799998885

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.90  E-value=6.7e-25  Score=191.36  Aligned_cols=161  Identities=14%  Similarity=0.015  Sum_probs=116.6

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcc------cc-ccccchheeehhhhccCC
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ------KK-ISVCSFILIRRAYFFKLP   76 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~------~~-~~~~~~~~l~~~~lg~lp   76 (183)
                      +++|+++  +|.+||++||+||||||||||+++|+|+++|++|+|.+++ +..      .. ......+..+.+.+..  
T Consensus       337 ~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~~~i~~v~q~~~~~~~~~tv~e~l~~~~--  413 (556)
T PRK11819        337 RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-TVKLAYVDQSRDALDPNKTVWEEISGGL--  413 (556)
T ss_pred             eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-ceEEEEEeCchhhcCCCCCHHHHHHhhc--
Confidence            3577754  5899999999999999999999999999999999999843 211      00 0000011111111110  


Q ss_pred             CCccccccccchHHHHHHHHcCCCC-ccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeec
Q 036195           77 NLKSICHEALAFPCLERIYVHGCPS-LRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIIT  146 (183)
Q Consensus        77 ~l~~l~~~~~~~~~l~vLe~l~L~~-L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~  146 (183)
                      ......  .......++++.+++.. ..++++.+|||||+|+      +..+|+.+   ||....|+..+..+..++...
T Consensus       414 ~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~  491 (556)
T PRK11819        414 DIIKVG--NREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEF  491 (556)
T ss_pred             cccccc--ccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC
Confidence            000000  01123456789999964 6789999999999983      47788887   899999999999999988876


Q ss_pred             CcccccCCCCCCceeeeeecccceEEEEe
Q 036195          147 TPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      .    .+++++|||++.+.+.||+++.|+
T Consensus       492 ~----~tvi~vtHd~~~~~~~~d~i~~l~  516 (556)
T PRK11819        492 P----GCAVVISHDRWFLDRIATHILAFE  516 (556)
T ss_pred             C----CeEEEEECCHHHHHHhCCEEEEEE
Confidence            3    368999999999999999999986

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=2.9e-25  Score=176.85  Aligned_cols=166  Identities=13%  Similarity=-0.018  Sum_probs=119.9

Q ss_pred             ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCC-----CcEEEEEecCccccccccchheeehhhhccCCCCc
Q 036195            7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDM-----SHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK   79 (183)
Q Consensus         7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~-----~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~   79 (183)
                      ++|++  |++++||+++|+||||||||||+++|+|+++|+     +|+|.++|+++.....  . .......++++++..
T Consensus        21 ~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~--~-~~~~~~~i~~~~q~~   97 (261)
T PRK14258         21 KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRV--N-LNRLRRQVSMVHPKP   97 (261)
T ss_pred             eEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhcccc--c-hHHhhccEEEEecCC
Confidence            57775  569999999999999999999999999999985     8999999876531100  0 000001122222211


Q ss_pred             cccc--------------c--c---cchHHHHHHHHcCCC----CccCCCCCCCChhhhhe------ecCchhhc---cc
Q 036195           80 SICH--------------E--A---LAFPCLERIYVHGCP----SLRKLPFSLESGKRNGV------LIGEEEWW---NQ  127 (183)
Q Consensus        80 ~l~~--------------~--~---~~~~~l~vLe~l~L~----~L~~~~~~~LSgGqk~~------i~~~~~w~---~~  127 (183)
                      .++.              .  .   ......++++.+++.    .+.+.++.+||+||+|+      +..+|+.+   ||
T Consensus        98 ~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP  177 (261)
T PRK14258         98 NLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEP  177 (261)
T ss_pred             ccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence            1100              0  0   011234566777763    36788999999999983      36677776   89


Q ss_pred             ccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          128 LEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       128 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +...|+..+..+..++..+..+...+|+++|||++.+...||++++++
T Consensus       178 ~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~  225 (261)
T PRK14258        178 CFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFK  225 (261)
T ss_pred             CccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEc
Confidence            999999999999999987755447899999999999999999999997

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=5e-25  Score=174.47  Aligned_cols=165  Identities=15%  Similarity=-0.006  Sum_probs=119.1

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCC-----CcEEEEEecCccccccccchheeehhhhccCCCC
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDM-----SHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNL   78 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~-----~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l   78 (183)
                      +++|+++  ++.+|++++|+||||||||||+++|+|+++|+     +|+|.++|.++.....  .... ....++++++.
T Consensus        17 ~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~--~~~~-~~~~i~~v~q~   93 (251)
T PRK14249         17 HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNL--DVVN-LRKRVGMVFQQ   93 (251)
T ss_pred             eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEcccccc--ChHH-hhceEEEEecC
Confidence            3577754  58999999999999999999999999999987     6999999986532100  0000 00122333332


Q ss_pred             cccccc---------------c----cchHHHHHHHHcCCC----CccCCCCCCCChhhhhe------ecCchhhc---c
Q 036195           79 KSICHE---------------A----LAFPCLERIYVHGCP----SLRKLPFSLESGKRNGV------LIGEEEWW---N  126 (183)
Q Consensus        79 ~~l~~~---------------~----~~~~~l~vLe~l~L~----~L~~~~~~~LSgGqk~~------i~~~~~w~---~  126 (183)
                      ..++..               .    ......++++.+++.    .+.+.++.+||+||+|+      ++.+|+.+   |
T Consensus        94 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDE  173 (251)
T PRK14249         94 PNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDE  173 (251)
T ss_pred             CccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            211110               0    011233345556653    45788999999999983      47788887   8


Q ss_pred             cccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          127 QLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       127 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      |+...|+..+..+..++..+. + ..+|+++||+++.+...||++++|+
T Consensus       174 Pt~~LD~~~~~~l~~~l~~~~-~-~~tilivsh~~~~~~~~~d~i~~l~  220 (251)
T PRK14249        174 PCSALDPVSTMRIEELMQELK-Q-NYTIAIVTHNMQQAARASDWTGFLL  220 (251)
T ss_pred             CCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHhhCCEEEEEe
Confidence            999999999999999998774 3 5899999999999999999999996

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=8.7e-25  Score=173.85  Aligned_cols=163  Identities=18%  Similarity=0.055  Sum_probs=118.0

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEe------cCccccccccchheeehhhhccCCC
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYA------VSLQKKISVCSFILIRRAYFFKLPN   77 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g------~~~~~~~~~~~~~~l~~~~lg~lp~   77 (183)
                      +++++++  ++.+||+++|+||||||||||+++|+|+.+|++|+|.++|      .++....    ... ....++++++
T Consensus        23 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~----~~~-~~~~i~~~~q   97 (257)
T PRK14246         23 KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID----AIK-LRKEVGMVFQ   97 (257)
T ss_pred             ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCC----HHH-HhcceEEEcc
Confidence            4577755  5889999999999999999999999999999997777665      3332100    000 0012233332


Q ss_pred             Ccccccc---------------ccc-----hHHHHHHHHcCCC----CccCCCCCCCChhhhhe------ecCchhhc--
Q 036195           78 LKSICHE---------------ALA-----FPCLERIYVHGCP----SLRKLPFSLESGKRNGV------LIGEEEWW--  125 (183)
Q Consensus        78 l~~l~~~---------------~~~-----~~~l~vLe~l~L~----~L~~~~~~~LSgGqk~~------i~~~~~w~--  125 (183)
                      ...++..               ...     ....++++.+++.    ...+.++..||+||+|+      +..+|+.+  
T Consensus        98 ~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~llll  177 (257)
T PRK14246         98 QPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLM  177 (257)
T ss_pred             CCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            2211110               000     1235667778875    35677889999999983      47788886  


Q ss_pred             -ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          126 -NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       126 -~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                       ||....|..++..+..++..+..  .++++++||+++.+.+.||++++++
T Consensus       178 DEPt~~LD~~~~~~l~~~l~~~~~--~~tiilvsh~~~~~~~~~d~v~~l~  226 (257)
T PRK14246        178 DEPTSMIDIVNSQAIEKLITELKN--EIAIVIVSHNPQQVARVADYVAFLY  226 (257)
T ss_pred             cCCCccCCHHHHHHHHHHHHHHhc--CcEEEEEECCHHHHHHhCCEEEEEE
Confidence             89999999999999999987754  3899999999999999999999997

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=99.90  E-value=8.4e-25  Score=173.87  Aligned_cols=162  Identities=12%  Similarity=0.073  Sum_probs=115.1

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++++++  ++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.....    .. ....++++++...++.
T Consensus        34 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~----~~-~~~~i~~v~q~~~l~~  108 (257)
T cd03288          34 KPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPL----HT-LRSRLSIILQDPILFS  108 (257)
T ss_pred             CcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCH----HH-HhhhEEEECCCCcccc
Confidence            3578754  589999999999999999999999999999999999999987643100    00 0112233333222211


Q ss_pred             c-----------ccchHHHHHHHHc-----------CCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccC
Q 036195           84 E-----------ALAFPCLERIYVH-----------GCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDD  132 (183)
Q Consensus        84 ~-----------~~~~~~l~vLe~l-----------~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d  132 (183)
                      .           .......++++.+           ++....+.++..||+||+|+      +..+|+++   ||+.+.|
T Consensus       109 ~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD  188 (257)
T cd03288         109 GSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASID  188 (257)
T ss_pred             cHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCC
Confidence            0           0011122222222           34445556778999999983      47788887   9999999


Q ss_pred             cccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          133 EATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+..+..++..+. + ..+++++||+++.+.. ||+++.++
T Consensus       189 ~~~~~~l~~~l~~~~-~-~~tiii~sh~~~~~~~-~dri~~l~  228 (257)
T cd03288         189 MATENILQKVVMTAF-A-DRTVVTIAHRVSTILD-ADLVLVLS  228 (257)
T ss_pred             HHHHHHHHHHHHHhc-C-CCEEEEEecChHHHHh-CCEEEEEE
Confidence            999999998887653 3 5889999999999865 99999996

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=1e-24  Score=192.67  Aligned_cols=165  Identities=16%  Similarity=0.015  Sum_probs=118.6

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCC-----
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNL-----   78 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l-----   78 (183)
                      +++|++  |+|.+|+++||+||||||||||||+|+|+++|++|+|.++|........ ...+......++++++.     
T Consensus        14 ~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~-q~~~~~~~~~~~~v~~~~~~~~   92 (638)
T PRK10636         14 RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVN-QETPALPQPALEYVIDGDREYR   92 (638)
T ss_pred             ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEe-cCCCCCCCCHHHHHHHhhHHHH
Confidence            467875  5699999999999999999999999999999999999998753100000 00000000001111000     


Q ss_pred             ------------------cccc-------ccccchHHHHHHHHcCCC-CccCCCCCCCChhhhhe------ecCchhhc-
Q 036195           79 ------------------KSIC-------HEALAFPCLERIYVHGCP-SLRKLPFSLESGKRNGV------LIGEEEWW-  125 (183)
Q Consensus        79 ------------------~~l~-------~~~~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~------i~~~~~w~-  125 (183)
                                        ..+.       .......+.++++.+++. ...++++.+|||||+++      ++.+|+.+ 
T Consensus        93 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~~P~lLL  172 (638)
T PRK10636         93 QLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLL  172 (638)
T ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHccCCCEEE
Confidence                              0000       001123466789999996 57899999999999983      47788887 


Q ss_pred             --ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          126 --NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       126 --~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                        ||....|+.++..+..++...    ..+|+++|||.+++.+.||+++.|+
T Consensus       173 LDEPtn~LD~~~~~~L~~~L~~~----~~tviivsHd~~~l~~~~d~i~~L~  220 (638)
T PRK10636        173 LDEPTNHLDLDAVIWLEKWLKSY----QGTLILISHDRDFLDPIVDKIIHIE  220 (638)
T ss_pred             EcCCCCcCCHHHHHHHHHHHHhC----CCeEEEEeCCHHHHHHhcCEEEEEe
Confidence              899999999999888887654    3689999999999999999999997

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=99.90  E-value=3.1e-25  Score=177.66  Aligned_cols=164  Identities=15%  Similarity=-0.014  Sum_probs=117.2

Q ss_pred             ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCC-----CCCcEEEEEecCccccccccchheeehhhhccCCCCc
Q 036195            7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFS-----DMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK   79 (183)
Q Consensus         7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~-----p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~   79 (183)
                      ++|++  |++++||+++|+|+||||||||+++|+|+++     |++|+|.++|.++.....  . .......++++++..
T Consensus        38 ~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~--~-~~~~~~~i~~v~q~~  114 (271)
T PRK14238         38 HALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSY--S-VEELRTNVGMVFQKP  114 (271)
T ss_pred             ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccc--c-HHHHhhhEEEEecCC
Confidence            57774  5699999999999999999999999999997     699999999976532100  0 000001223333322


Q ss_pred             cccc-----c---------cc-----chHHHHHHHHcC----CCCccCCCCCCCChhhhhe------ecCchhhc---cc
Q 036195           80 SICH-----E---------AL-----AFPCLERIYVHG----CPSLRKLPFSLESGKRNGV------LIGEEEWW---NQ  127 (183)
Q Consensus        80 ~l~~-----~---------~~-----~~~~l~vLe~l~----L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~  127 (183)
                      .++.     +         ..     .....++++.++    +....+.++.+||+||+|+      ++.+|+.+   ||
T Consensus       115 ~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEP  194 (271)
T PRK14238        115 NPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEP  194 (271)
T ss_pred             ccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence            1111     0         00     011233444443    3445678899999999983      36788887   89


Q ss_pred             ccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          128 LEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       128 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +...|+..+..+..++..+..  ..+++++|||++.+.+.||+++.|+
T Consensus       195 t~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~~~~i~~~~d~i~~l~  240 (271)
T PRK14238        195 TSALDPISTLKVEELVQELKK--DYSIIIVTHNMQQAARISDKTAFFL  240 (271)
T ss_pred             CCcCCHHHHHHHHHHHHHHHc--CCEEEEEEcCHHHHHHhCCEEEEEE
Confidence            999999999999999988754  3789999999999999999999986

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=6.5e-25  Score=193.96  Aligned_cols=163  Identities=18%  Similarity=0.090  Sum_probs=116.9

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhc--cCCCCccc
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFF--KLPNLKSI   81 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg--~lp~l~~l   81 (183)
                      +++|+++  +|.+||++||+||||||||||+++|+|+++|++|+|.+++. .  ..++........+...  .+......
T Consensus       325 ~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-~--~igy~~Q~~~~~l~~~~~~~~~~~~~  401 (638)
T PRK10636        325 RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-I--KLGYFAQHQLEFLRADESPLQHLARL  401 (638)
T ss_pred             eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-E--EEEEecCcchhhCCccchHHHHHHHh
Confidence            4578755  58999999999999999999999999999999999998632 1  0010000000000000  00000000


Q ss_pred             cccccchHHHHHHHHcCCC-CccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCcccc
Q 036195           82 CHEALAFPCLERIYVHGCP-SLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTV  151 (183)
Q Consensus        82 ~~~~~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~  151 (183)
                      ........+.++++.+++. ...++++.+|||||+++      +..+|+.+   ||....|+.++..+...+...  +  
T Consensus       402 ~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~--  477 (638)
T PRK10636        402 APQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--E--  477 (638)
T ss_pred             CchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--C--
Confidence            1111123456788999996 47889999999999983      36678876   899999999999999998766  2  


Q ss_pred             cCCCCCCceeeeeecccceEEEEe
Q 036195          152 ISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      .+|+++|||++++.+.||++++++
T Consensus       478 gtvi~vSHd~~~~~~~~d~i~~l~  501 (638)
T PRK10636        478 GALVVVSHDRHLLRSTTDDLYLVH  501 (638)
T ss_pred             CeEEEEeCCHHHHHHhCCEEEEEE
Confidence            489999999999999999999996

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.90  E-value=1.1e-24  Score=189.94  Aligned_cols=162  Identities=12%  Similarity=-0.016  Sum_probs=117.8

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcc------ccc-cccchheeehhhhccCC
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ------KKI-SVCSFILIRRAYFFKLP   76 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~------~~~-~~~~~~~l~~~~lg~lp   76 (183)
                      +++|++  |+|.+||+++|+||||||||||+++|+|+++|++|+|.+++ ++.      ... .....+..+.+..+. .
T Consensus       335 ~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~~~i~~v~q~~~~~~~~~tv~e~l~~~~-~  412 (552)
T TIGR03719       335 KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-TVKLAYVDQSRDALDPNKTVWEEISGGL-D  412 (552)
T ss_pred             eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-ceEEEEEeCCccccCCCCcHHHHHHhhc-c
Confidence            357774  46999999999999999999999999999999999999843 211      000 000111222111111 0


Q ss_pred             CCccccccccchHHHHHHHHcCCCC-ccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeec
Q 036195           77 NLKSICHEALAFPCLERIYVHGCPS-LRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIIT  146 (183)
Q Consensus        77 ~l~~l~~~~~~~~~l~vLe~l~L~~-L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~  146 (183)
                       ......  ......++++.+++.. ..++++.+|||||+|+      ++.+|+.+   ||....|+..+..+..++..+
T Consensus       413 -~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~  489 (552)
T TIGR03719       413 -IIQLGK--REVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEF  489 (552)
T ss_pred             -ccccCc--chHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHC
Confidence             000100  0123456888999964 5789999999999983      47788887   999999999999999998876


Q ss_pred             CcccccCCCCCCceeeeeecccceEEEEee
Q 036195          147 TPQTVISIPQPSYTYEATIRPRYELICIDV  176 (183)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (183)
                      .    .+++|+|||++.+.+.||+++.++-
T Consensus       490 ~----~~viivsHd~~~~~~~~d~i~~l~~  515 (552)
T TIGR03719       490 A----GCAVVISHDRWFLDRIATHILAFEG  515 (552)
T ss_pred             C----CeEEEEeCCHHHHHHhCCEEEEEEC
Confidence            3    3689999999999999999999863

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.90  E-value=1.6e-24  Score=188.79  Aligned_cols=165  Identities=13%  Similarity=0.017  Sum_probs=114.4

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecC-c----cccccccchheeehhhhccCC--
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVS-L----QKKISVCSFILIRRAYFFKLP--   76 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~-~----~~~~~~~~~~~l~~~~lg~lp--   76 (183)
                      +++|+++  +|++||+++|+||||||||||+++|+|+++|++|+|.+++.. +    +........+..+.+.++...  
T Consensus        18 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~   97 (552)
T TIGR03719        18 KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEIK   97 (552)
T ss_pred             CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCCCCcHHHHHHHhhHHHH
Confidence            3578754  699999999999999999999999999999999999986421 1    000000011111111111000  


Q ss_pred             ----CCc------cccccc----------------------cchHHHHHHHHcCCCCccCCCCCCCChhhhhe------e
Q 036195           77 ----NLK------SICHEA----------------------LAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------L  118 (183)
Q Consensus        77 ----~l~------~l~~~~----------------------~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i  118 (183)
                          ...      ......                      ......++++.+++.. .+.++.+|||||+++      +
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkqrv~la~al  176 (552)
T TIGR03719        98 DALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP-WDADVTKLSGGERRRVALCRLL  176 (552)
T ss_pred             HHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc-ccCchhhcCHHHHHHHHHHHHH
Confidence                000      000000                      0112345667777754 588999999999983      3


Q ss_pred             cCchhhc---ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          119 IGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       119 ~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +.+|+.+   ||+...|+..+..+..++....    .+++++|||++.+...||+++.|+
T Consensus       177 ~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~----~tvIiisHd~~~~~~~~d~v~~l~  232 (552)
T TIGR03719       177 LSKPDMLLLDEPTNHLDAESVAWLEQHLQEYP----GTVVAVTHDRYFLDNVAGWILELD  232 (552)
T ss_pred             hcCCCEEEEcCCCCCCChHHHHHHHHHHHhCC----CeEEEEeCCHHHHHhhcCeEEEEE
Confidence            7788886   8999999999998888877542    489999999999999999999997

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=1.6e-24  Score=161.21  Aligned_cols=151  Identities=15%  Similarity=0.159  Sum_probs=109.4

Q ss_pred             ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcc---
Q 036195            6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKS---   80 (183)
Q Consensus         6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~---   80 (183)
                      ++++.  +|++.+||.+-|.||||||||||||+|+|+.+|++|+|.++|..++....   ........+|..+-++.   
T Consensus        15 ~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~---~~~~~l~yLGH~~giK~eLT   91 (209)
T COG4133          15 RTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRE---SYHQALLYLGHQPGIKTELT   91 (209)
T ss_pred             ceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchh---hHHHHHHHhhccccccchhh
Confidence            45565  55689999999999999999999999999999999999999987764210   00111122332222210   


Q ss_pred             ----------ccccccchHHHHHHHHcCCCCccCCCCCCCChhhhhee------cCchhhc---ccccccCccccccccc
Q 036195           81 ----------ICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGVL------IGEEEWW---NQLEWDDEATKHVFSS  141 (183)
Q Consensus        81 ----------l~~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~i------~~~~~w~---~~l~~~d~~~~~~~~~  141 (183)
                                +.+......+.++++.+++..+.+.|+.+||.||+|++      .+.+..|   ||+.--|.+.+..|..
T Consensus        92 a~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~  171 (209)
T COG4133          92 ALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTA  171 (209)
T ss_pred             HHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHH
Confidence                      11111123467889999999999999999999999854      3433334   8899999999999999


Q ss_pred             ceeecCcccccCCCCCCce
Q 036195          142 KLIITTPQTVISIPQPSYT  160 (183)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~  160 (183)
                      +|.....+ ..-|+.+||.
T Consensus       172 l~~~H~~~-GGiVllttHq  189 (209)
T COG4133         172 LMAAHAAQ-GGIVLLTTHQ  189 (209)
T ss_pred             HHHHHhcC-CCEEEEecCC
Confidence            99888877 4555566664

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.90  E-value=6.9e-25  Score=183.03  Aligned_cols=163  Identities=14%  Similarity=0.022  Sum_probs=121.2

Q ss_pred             cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcccc-----------------ccccchheeehhhhc
Q 036195           11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKK-----------------ISVCSFILIRRAYFF   73 (183)
Q Consensus        11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~-----------------~~~~~~~~l~~~~lg   73 (183)
                      ||+|++||+.||+|+||||||||+++|.|+++|++|+|.++|+.+.-.                 ..+..+++.+++.++
T Consensus        24 ~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg  103 (501)
T COG3845          24 SLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILG  103 (501)
T ss_pred             eeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhhhhhhc
Confidence            667999999999999999999999999999999999999999875421                 012234555555555


Q ss_pred             cCCCC-ccccccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccce
Q 036195           74 KLPNL-KSICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKL  143 (183)
Q Consensus        74 ~lp~l-~~l~~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~  143 (183)
                      .-+.. ..+.......++.++.+..+++--.+.++.+||-|++|+      ++..++.+   ||..---|..-+.|-..+
T Consensus       104 ~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l  183 (501)
T COG3845         104 LEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEIL  183 (501)
T ss_pred             CccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence            54321 111112223456788889999888899999999998883      35666664   665555554445555556


Q ss_pred             eecCcccccCCCCCCceeeeeecccceEEEE
Q 036195          144 IITTPQTVISIPQPSYTYEATIRPRYELICI  174 (183)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (183)
                      ..++.+ ..+|+.+||-|+++|+.|||+-+|
T Consensus       184 ~~l~~~-G~tIi~ITHKL~Ev~~iaDrvTVL  213 (501)
T COG3845         184 RRLAAE-GKTIIFITHKLKEVMAIADRVTVL  213 (501)
T ss_pred             HHHHHC-CCEEEEEeccHHHHHHhhCeeEEE
Confidence            656666 999999999999999999999876

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.90  E-value=9.9e-25  Score=164.19  Aligned_cols=142  Identities=15%  Similarity=0.017  Sum_probs=110.6

Q ss_pred             ccccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccc
Q 036195            5 YRPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSIC   82 (183)
Q Consensus         5 ~~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~   82 (183)
                      .+++|++  |++++|++++|+||||||||||||++.    +++|++.+.+.....       .   ...+.++++     
T Consensus         7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~~~~-------~---~~~~~~~~q-----   67 (176)
T cd03238           7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFLPKF-------S---RNKLIFIDQ-----   67 (176)
T ss_pred             eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCccccc-------c---cccEEEEhH-----
Confidence            4567875  569999999999999999999999985    479999987652110       0   001122111     


Q ss_pred             ccccchHHHHHHHHcCCCCc-cCCCCCCCChhhhhe------ecCc--hhhc---ccccccCcccccccccceeecCccc
Q 036195           83 HEALAFPCLERIYVHGCPSL-RKLPFSLESGKRNGV------LIGE--EEWW---NQLEWDDEATKHVFSSKLIITTPQT  150 (183)
Q Consensus        83 ~~~~~~~~l~vLe~l~L~~L-~~~~~~~LSgGqk~~------i~~~--~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~  150 (183)
                              .++++.+++... .+.++.+||+||+|+      +..+  |+.+   ||...-|+..+..+...+..+.. .
T Consensus        68 --------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~-~  138 (176)
T cd03238          68 --------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLID-L  138 (176)
T ss_pred             --------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-C
Confidence                    578899999764 788999999999983      3556  7776   89999999999999999887754 5


Q ss_pred             ccCCCCCCceeeeeecccceEEEEe
Q 036195          151 VISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      .++|+++||+++++ +.||+++.++
T Consensus       139 g~tvIivSH~~~~~-~~~d~i~~l~  162 (176)
T cd03238         139 GNTVILIEHNLDVL-SSADWIIDFG  162 (176)
T ss_pred             CCEEEEEeCCHHHH-HhCCEEEEEC
Confidence            88999999999985 7899999884

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=1.2e-24  Score=172.41  Aligned_cols=165  Identities=13%  Similarity=0.021  Sum_probs=117.2

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCC--C---CCcEEEEEecCccccccccchheeehhhhccCCCC
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFS--D---MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNL   78 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~--p---~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l   78 (183)
                      +++|++  |++.+||+++|+||||||||||+++|+|+.+  |   ++|+|.++|.++.....  .... ....++++++.
T Consensus        18 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~--~~~~-~~~~i~~~~q~   94 (252)
T PRK14255         18 FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNE--DVVQ-LRKQVGMVFQQ   94 (252)
T ss_pred             eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccc--cHHH-hcCeEEEEECC
Confidence            357775  5689999999999999999999999999975  5   59999999986632100  0000 00112232222


Q ss_pred             ccccc-----c----------cc----chHHHHHHHHcCC----CCccCCCCCCCChhhhhe------ecCchhhc---c
Q 036195           79 KSICH-----E----------AL----AFPCLERIYVHGC----PSLRKLPFSLESGKRNGV------LIGEEEWW---N  126 (183)
Q Consensus        79 ~~l~~-----~----------~~----~~~~l~vLe~l~L----~~L~~~~~~~LSgGqk~~------i~~~~~w~---~  126 (183)
                      ..++.     +          ..    .....+.++.+++    ....+.++.+||+||+|+      +..+|+.+   |
T Consensus        95 ~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDE  174 (252)
T PRK14255         95 PNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDE  174 (252)
T ss_pred             CccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            11110     0          00    1122344566655    345678899999999983      47788876   8


Q ss_pred             cccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          127 QLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       127 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      |....|+..+..+..++..+..+  .+++++||+++.+...||+++.++
T Consensus       175 Pt~~LD~~~~~~l~~~l~~~~~~--~tii~vsH~~~~~~~~~d~i~~l~  221 (252)
T PRK14255        175 PTSALDPISSTQIENMLLELRDQ--YTIILVTHSMHQASRISDKTAFFL  221 (252)
T ss_pred             CCccCCHHHHHHHHHHHHHHHhC--CEEEEEECCHHHHHHhCCEEEEEE
Confidence            99999999999999999887543  789999999999999999999996

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=1.2e-24  Score=173.72  Aligned_cols=166  Identities=12%  Similarity=-0.015  Sum_probs=118.0

Q ss_pred             cccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCC-----CCcEEEEEecCccccccccchheeehhhhccCCCCc
Q 036195            7 PHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSD-----MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK   79 (183)
Q Consensus         7 ~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p-----~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~   79 (183)
                      ++|+++  ++++||+++|+||||||||||+++|+|+.+|     ++|+|.++|.++........ .......++++++..
T Consensus        30 ~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~-~~~~~~~i~~~~q~~  108 (265)
T PRK14252         30 QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVD-PIEVRMRISMVFQKP  108 (265)
T ss_pred             eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccC-HHHHhccEEEEccCC
Confidence            678754  5899999999999999999999999999975     79999999875421000000 000001223333321


Q ss_pred             ccccc-------------------ccchHHHHHHHHcCCC----CccCCCCCCCChhhhhe------ecCchhhc---cc
Q 036195           80 SICHE-------------------ALAFPCLERIYVHGCP----SLRKLPFSLESGKRNGV------LIGEEEWW---NQ  127 (183)
Q Consensus        80 ~l~~~-------------------~~~~~~l~vLe~l~L~----~L~~~~~~~LSgGqk~~------i~~~~~w~---~~  127 (183)
                      .++..                   .......++++.+++.    ...+.++.+||+||+|+      ++.+|+.+   ||
T Consensus       109 ~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP  188 (265)
T PRK14252        109 NPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEP  188 (265)
T ss_pred             cCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence            11110                   0011234556666653    45678899999999983      36788876   89


Q ss_pred             ccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          128 LEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       128 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +...|+..+..+..++..+..  .++++++||+++++...||+++.++
T Consensus       189 t~gLD~~~~~~l~~~l~~l~~--~~tiiivth~~~~~~~~~d~i~~l~  234 (265)
T PRK14252        189 TSALDPIATASIEELISDLKN--KVTILIVTHNMQQAARVSDYTAYMY  234 (265)
T ss_pred             CccCCHHHHHHHHHHHHHHHh--CCEEEEEecCHHHHHHhCCEEEEEE
Confidence            999999999999999988754  3789999999999999999999986

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.89  E-value=1.1e-24  Score=177.21  Aligned_cols=165  Identities=12%  Similarity=0.016  Sum_probs=118.2

Q ss_pred             ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCC-----CCCcEEEEEecCccccccccchheeehhhhccCCCC
Q 036195            6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFS-----DMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNL   78 (183)
Q Consensus         6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~-----p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l   78 (183)
                      +++|+  ||++.+||+++|+||||||||||+++|+|+++     |++|+|.++|.++.....  ..... ...++++++.
T Consensus        58 ~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~--~~~~~-~~~i~~v~q~  134 (305)
T PRK14264         58 DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGV--NLVEL-RKRVGMVFQS  134 (305)
T ss_pred             eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc--cHHHH-hhceEEEccC
Confidence            45787  45689999999999999999999999999986     689999999976532100  00000 0112222222


Q ss_pred             ccccc-------------------------------cccchHHHHHHHHcCCC----CccCCCCCCCChhhhhe------
Q 036195           79 KSICH-------------------------------EALAFPCLERIYVHGCP----SLRKLPFSLESGKRNGV------  117 (183)
Q Consensus        79 ~~l~~-------------------------------~~~~~~~l~vLe~l~L~----~L~~~~~~~LSgGqk~~------  117 (183)
                      ..++.                               ......+.++++.+++.    .+.+.++.+||+||+|+      
T Consensus       135 ~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAra  214 (305)
T PRK14264        135 PNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARC  214 (305)
T ss_pred             CccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHH
Confidence            11100                               00011245567777763    45678899999999983      


Q ss_pred             ecCchhhc---ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEE-EEe
Q 036195          118 LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELI-CID  175 (183)
Q Consensus       118 i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  175 (183)
                      ++.+|+.+   ||....|+..+..+..++..+..+  .+++|+||+++.+...||+++ +++
T Consensus       215 L~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~--~tiiivtH~~~~i~~~~d~i~~~l~  274 (305)
T PRK14264        215 LAVDPEVILMDEPASALDPIATSKIEDLIEELAEE--YTVVVVTHNMQQAARISDQTAVFLT  274 (305)
T ss_pred             HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcC--CEEEEEEcCHHHHHHhcCEEEEEec
Confidence            47788887   899999999999999999887654  689999999999999999975 444

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.89  E-value=1.8e-24  Score=171.08  Aligned_cols=165  Identities=13%  Similarity=-0.002  Sum_probs=119.4

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCC-----CCCcEEEEEecCccccccccchheeehhhhccCCCC
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFS-----DMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNL   78 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~-----p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l   78 (183)
                      +++++++  ++.+||+++|+||||||||||+++|+|+.+     |++|+|.++|.++.....  .... ....++++++.
T Consensus        16 ~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~--~~~~-~~~~i~~~~q~   92 (250)
T PRK14266         16 AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAV--DVVE-LRKKVGMVFQK   92 (250)
T ss_pred             eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccc--cHHH-HhhheEEEecC
Confidence            3577754  589999999999999999999999999874     489999999987642100  0000 01123333332


Q ss_pred             cccccc-------------------ccchHHHHHHHHcCCC----CccCCCCCCCChhhhhe------ecCchhhc---c
Q 036195           79 KSICHE-------------------ALAFPCLERIYVHGCP----SLRKLPFSLESGKRNGV------LIGEEEWW---N  126 (183)
Q Consensus        79 ~~l~~~-------------------~~~~~~l~vLe~l~L~----~L~~~~~~~LSgGqk~~------i~~~~~w~---~  126 (183)
                      ..++..                   .......++++.+++.    .+.+.++.+||+||+|+      +..+|+.|   |
T Consensus        93 ~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDE  172 (250)
T PRK14266         93 PNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDE  172 (250)
T ss_pred             CccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence            221110                   0011234556676763    35678899999999983      36788887   8


Q ss_pred             cccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          127 QLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       127 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      |+...|+.++..+..++..+. + ..+|+++||+++.+...+|+++.++
T Consensus       173 P~~gLD~~~~~~l~~~l~~~~-~-~~tiii~sh~~~~~~~~~~~i~~l~  219 (250)
T PRK14266        173 PCSALDPISTTKIEDLIHKLK-E-DYTIVIVTHNMQQATRVSKYTSFFL  219 (250)
T ss_pred             CCccCCHHHHHHHHHHHHHHh-c-CCeEEEEECCHHHHHhhcCEEEEEE
Confidence            999999999999999998774 3 5799999999999999999999885

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.89  E-value=2.5e-24  Score=157.95  Aligned_cols=166  Identities=14%  Similarity=0.079  Sum_probs=123.8

Q ss_pred             cccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccc
Q 036195            5 YRPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSIC   82 (183)
Q Consensus         5 ~~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~   82 (183)
                      ..++|+  ||.+.+||.++|+||+|||||||+|+++-|++|++|+++|.|+++....     +..-+..+.|..|...+|
T Consensus        15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~-----pea~Rq~VsY~~Q~paLf   89 (223)
T COG4619          15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLK-----PEAYRQQVSYCAQTPALF   89 (223)
T ss_pred             CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccC-----hHHHHHHHHHHHcCcccc
Confidence            457776  6679999999999999999999999999999999999999999886521     111112334444433333


Q ss_pred             cc----------------ccchHHHHHHHHcCCCC-ccCCCCCCCChhhhhee------cCchhhc---ccccccCcccc
Q 036195           83 HE----------------ALAFPCLERIYVHGCPS-LRKLPFSLESGKRNGVL------IGEEEWW---NQLEWDDEATK  136 (183)
Q Consensus        83 ~~----------------~~~~~~l~vLe~l~L~~-L~~~~~~~LSgGqk~~i------~~~~~w~---~~l~~~d~~~~  136 (183)
                      ..                +........++.++++. ....++..|||||+|+|      .--|+.+   |..+-.|++.+
T Consensus        90 g~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nk  169 (223)
T COG4619          90 GDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNK  169 (223)
T ss_pred             ccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhH
Confidence            21                11223567888999975 57888999999999843      2333332   66778888888


Q ss_pred             cccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          137 HVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ..++..+........++++-++||-...|+..|++|-+-
T Consensus       170 r~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~  208 (223)
T COG4619         170 RNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQ  208 (223)
T ss_pred             HHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEec
Confidence            888887666654448899999999999999999999763

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.89  E-value=5.7e-24  Score=188.06  Aligned_cols=164  Identities=17%  Similarity=0.035  Sum_probs=115.8

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCc-cc---cc-cccchheeehhh-------
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSL-QK---KI-SVCSFILIRRAY-------   71 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-~~---~~-~~~~~~~l~~~~-------   71 (183)
                      +++|++  |+|.+|+++||+||||||||||||+|+|+++|++|+|.+++... ..   .. ............       
T Consensus        16 ~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~~~~v~~~~~~~~~~~~   95 (635)
T PRK11147         16 APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGIEEQA   95 (635)
T ss_pred             ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCCCCCHHHHHHHhhHHHH
Confidence            467875  56899999999999999999999999999999999999976321 00   00 000000000000       


Q ss_pred             --------hcc-CC-----C-C---ccc-------cccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecC
Q 036195           72 --------FFK-LP-----N-L---KSI-------CHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIG  120 (183)
Q Consensus        72 --------lg~-lp-----~-l---~~l-------~~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~  120 (183)
                              +.. +.     . +   ..+       ........+.++++.+++.  .++++.+|||||+++      +..
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~--~~~~~~~LSgGekqRv~LAraL~~  173 (635)
T PRK11147         96 EYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD--PDAALSSLSGGWLRKAALGRALVS  173 (635)
T ss_pred             HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC--CCCchhhcCHHHHHHHHHHHHHhc
Confidence                    000 00     0 0   000       0001123456788888886  388999999999983      377


Q ss_pred             chhhc---ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          121 EEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       121 ~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +|+.+   ||....|+.++..+..++....    .+|+++|||.+++...||+++.|+
T Consensus       174 ~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~----~tvlivsHd~~~l~~~~d~i~~L~  227 (635)
T PRK11147        174 NPDVLLLDEPTNHLDIETIEWLEGFLKTFQ----GSIIFISHDRSFIRNMATRIVDLD  227 (635)
T ss_pred             CCCEEEEcCCCCccCHHHHHHHHHHHHhCC----CEEEEEeCCHHHHHHhcCeEEEEE
Confidence            88887   8999999999999998887653    489999999999999999999997

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=99.89  E-value=3.3e-24  Score=187.81  Aligned_cols=162  Identities=15%  Similarity=0.085  Sum_probs=118.7

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|+++  ++++||.++|+||||||||||+++|+|+++|++|+|.++|.++....    ... ....++++||...++.
T Consensus       356 ~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~----~~~-~~~~i~~v~Q~~~lf~  430 (582)
T PRK11176        356 VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYT----LAS-LRNQVALVSQNVHLFN  430 (582)
T ss_pred             CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcC----HHH-HHhhceEEccCceeec
Confidence            4688855  58999999999999999999999999999999999999998875421    011 1134566666544443


Q ss_pred             c-------------ccchHHHHHHHHcCCCCc-------cCC----CCCCCChhhhhe------ecCchhhc---ccccc
Q 036195           84 E-------------ALAFPCLERIYVHGCPSL-------RKL----PFSLESGKRNGV------LIGEEEWW---NQLEW  130 (183)
Q Consensus        84 ~-------------~~~~~~l~vLe~l~L~~L-------~~~----~~~~LSgGqk~~------i~~~~~w~---~~l~~  130 (183)
                      .             ....+..++++.+++.+.       .+.    ....|||||+|+      +..+|..+   ||...
T Consensus       431 ~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsa  510 (582)
T PRK11176        431 DTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSA  510 (582)
T ss_pred             chHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECcccc
Confidence            1             122345666666665332       122    235599999984      36677775   89999


Q ss_pred             cCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          131 DDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       131 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      -|+++...+...+.....  .+.++++||+++. ++.+|+||.+|
T Consensus       511 LD~~t~~~i~~~l~~~~~--~~tvI~VtHr~~~-~~~~D~Ii~l~  552 (582)
T PRK11176        511 LDTESERAIQAALDELQK--NRTSLVIAHRLST-IEKADEILVVE  552 (582)
T ss_pred             CCHHHHHHHHHHHHHHhC--CCEEEEEecchHH-HHhCCEEEEEE
Confidence            999998888877765532  5899999999965 67799999997

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=99.89  E-value=3.9e-24  Score=190.60  Aligned_cols=160  Identities=14%  Similarity=0.022  Sum_probs=119.5

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|+++  ++++||.+||+||||||||||+|+|+|+++|++|+|.++|.++.+..    ... -+..++++||...++.
T Consensus       466 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~----~~~-lr~~i~~v~Q~~~lf~  540 (686)
T TIGR03797       466 PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLD----VQA-VRRQLGVVLQNGRLMS  540 (686)
T ss_pred             ccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCC----HHH-HHhccEEEccCCccCc
Confidence            4688855  58999999999999999999999999999999999999999876421    111 1234666676655543


Q ss_pred             c-----------ccchHHHHHHHHcCCCCcc-------C----CCCCCCChhhhhee------cCchhhc---ccccccC
Q 036195           84 E-----------ALAFPCLERIYVHGCPSLR-------K----LPFSLESGKRNGVL------IGEEEWW---NQLEWDD  132 (183)
Q Consensus        84 ~-----------~~~~~~l~vLe~l~L~~L~-------~----~~~~~LSgGqk~~i------~~~~~w~---~~l~~~d  132 (183)
                      .           ....+..++++.+++.+..       +    .....|||||||+|      ..+|..+   |+.+..|
T Consensus       541 gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD  620 (686)
T TIGR03797       541 GSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALD  620 (686)
T ss_pred             ccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCC
Confidence            2           1233456677777765322       1    22356999999843      6677775   8899999


Q ss_pred             cccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          133 EATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +++...+...+...    .+++++++|+++.+ +.+|+++.+|
T Consensus       621 ~~te~~i~~~L~~~----~~T~IiItHr~~~i-~~~D~Iivl~  658 (686)
T TIGR03797       621 NRTQAIVSESLERL----KVTRIVIAHRLSTI-RNADRIYVLD  658 (686)
T ss_pred             HHHHHHHHHHHHHh----CCeEEEEecChHHH-HcCCEEEEEE
Confidence            99988888877654    36889999999664 6699999997

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.89  E-value=5.9e-24  Score=186.06  Aligned_cols=162  Identities=15%  Similarity=0.098  Sum_probs=123.0

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|+++  ++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+..    ...+ +..+++++|...++.
T Consensus       353 ~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~----~~~~-r~~i~~v~Q~~~lf~  427 (574)
T PRK11160        353 QPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYS----EAAL-RQAISVVSQRVHLFS  427 (574)
T ss_pred             CcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCC----HHHH-HhheeEEcccchhhc
Confidence            4688855  58999999999999999999999999999999999999998776421    0111 123455555544433


Q ss_pred             c------------ccchHHHHHHHHcCCCCccCC----------CCCCCChhhhhe------ecCchhhc---ccccccC
Q 036195           84 E------------ALAFPCLERIYVHGCPSLRKL----------PFSLESGKRNGV------LIGEEEWW---NQLEWDD  132 (183)
Q Consensus        84 ~------------~~~~~~l~vLe~l~L~~L~~~----------~~~~LSgGqk~~------i~~~~~w~---~~l~~~d  132 (183)
                      .            ....+..++++.+++.+..+.          ....|||||+|+      +..+|+.+   |+....|
T Consensus       428 ~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD  507 (574)
T PRK11160        428 ATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLD  507 (574)
T ss_pred             ccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence            1            223356778888888765443          456799999984      36777776   8899999


Q ss_pred             cccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          133 EATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ++++..+...+.....  .+.+++++|+++.+ +.+|+++.+|
T Consensus       508 ~~t~~~i~~~l~~~~~--~~tviiitHr~~~~-~~~d~i~~l~  547 (574)
T PRK11160        508 AETERQILELLAEHAQ--NKTVLMITHRLTGL-EQFDRICVMD  547 (574)
T ss_pred             HHHHHHHHHHHHHHcC--CCEEEEEecChhHH-HhCCEEEEEe
Confidence            9999999888876642  58899999999865 5699999997

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=99.89  E-value=1.3e-23  Score=162.41  Aligned_cols=170  Identities=14%  Similarity=0.073  Sum_probs=127.3

Q ss_pred             cccccccce--ecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcccc---------cccc------chh--
Q 036195            5 YRPHLRYIE--DDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKK---------ISVC------SFI--   65 (183)
Q Consensus         5 ~~~~l~~l~--i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~---------~~~~------~~~--   65 (183)
                      .+++|++++  |++||.++|+|||||||||||++++|..+|++|.+.+.|+...+.         .+..      .++  
T Consensus        43 gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~  122 (257)
T COG1119          43 GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVR  122 (257)
T ss_pred             CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhcccc
Confidence            578999886  999999999999999999999999999999999999998754321         1111      111  


Q ss_pred             --eeehhhhccCCCCccccc-ccc---chHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccc
Q 036195           66 --LIRRAYFFKLPNLKSICH-EAL---AFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEW  130 (183)
Q Consensus        66 --~l~~~~lg~lp~l~~l~~-~~~---~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~  130 (183)
                        +++.+.-++....+ +++ ...   ...+..+++.+++.++.++++.+||-||+|+      +..+|+.+   ||+++
T Consensus       123 ~~v~dvVlSg~~~siG-~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~G  201 (257)
T COG1119         123 ETVRDVVLSGFFASIG-IYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQG  201 (257)
T ss_pred             cccceeeeeccccccc-ccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCcccc
Confidence              12212222222222 332 211   2246778999999999999999999999983      36677775   89999


Q ss_pred             cCcccccccccceeecCcc-cccCCCCCCceeeeeecccceEEEEe
Q 036195          131 DDEATKHVFSSKLIITTPQ-TVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       131 ~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      .|...++.+..++..+... ..-+++++||..+++.++-.++.-|+
T Consensus       202 LDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~  247 (257)
T COG1119         202 LDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLK  247 (257)
T ss_pred             CChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEee
Confidence            9999998888888766653 45668899999999998888877665

>PLN03073 ABC transporter F family; Provisional

Probab=99.89  E-value=5.2e-24  Score=189.73  Aligned_cols=158  Identities=16%  Similarity=0.099  Sum_probs=114.3

Q ss_pred             cccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccc------hheeehhhhccCCCC
Q 036195            7 PHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCS------FILIRRAYFFKLPNL   78 (183)
Q Consensus         7 ~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~------~~~l~~~~lg~lp~l   78 (183)
                      ++|+++  +|.+||+++|+||||||||||+|+|+|+++|++|+|.+++..   ...+..      +..........    
T Consensus       523 ~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~---~igyv~Q~~~~~l~~~~~~~~~~----  595 (718)
T PLN03073        523 LLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKV---RMAVFSQHHVDGLDLSSNPLLYM----  595 (718)
T ss_pred             eeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCce---eEEEEeccccccCCcchhHHHHH----
Confidence            478754  589999999999999999999999999999999999876431   000000      00000000000    


Q ss_pred             ccccccccchHHHHHHHHcCCC-CccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCc
Q 036195           79 KSICHEALAFPCLERIYVHGCP-SLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTP  148 (183)
Q Consensus        79 ~~l~~~~~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~  148 (183)
                      ...+.........++++.+++. ...++++.+|||||+|+      +..+|+++   ||....|+..+..+...+...  
T Consensus       596 ~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--  673 (718)
T PLN03073        596 MRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--  673 (718)
T ss_pred             HHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--
Confidence            0001111123467789999997 47889999999999983      37788887   899999998888776665533  


Q ss_pred             ccccCCCCCCceeeeeecccceEEEEe
Q 036195          149 QTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +  .+++++|||++++...||+++.++
T Consensus       674 ~--gtvIivSHd~~~i~~~~drv~~l~  698 (718)
T PLN03073        674 Q--GGVLMVSHDEHLISGSVDELWVVS  698 (718)
T ss_pred             C--CEEEEEECCHHHHHHhCCEEEEEE
Confidence            2  489999999999999999999986

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.89  E-value=8.7e-24  Score=185.58  Aligned_cols=162  Identities=12%  Similarity=0.042  Sum_probs=120.9

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|+++  ++++||.+||+|+||||||||+++|+|+++|++|+|.++|.++.+..     +..-...++++||...++.
T Consensus       354 ~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~-----~~~l~~~i~~v~Q~~~lF~  428 (592)
T PRK10790        354 NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLS-----HSVLRQGVAMVQQDPVVLA  428 (592)
T ss_pred             CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCC-----HHHHHhheEEEccCCcccc
Confidence            4688855  58999999999999999999999999999999999999998876421     1111234666777665553


Q ss_pred             c-----------ccchHHHHHHHHcCCCCcc-----------CCCCCCCChhhhhe------ecCchhhc---ccccccC
Q 036195           84 E-----------ALAFPCLERIYVHGCPSLR-----------KLPFSLESGKRNGV------LIGEEEWW---NQLEWDD  132 (183)
Q Consensus        84 ~-----------~~~~~~l~vLe~l~L~~L~-----------~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d  132 (183)
                      .           ..+.+..++++.+++.+..           ......|||||+|+      +..+|+.+   ||..-.|
T Consensus       429 ~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD  508 (592)
T PRK10790        429 DTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANID  508 (592)
T ss_pred             chHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCC
Confidence            2           1233556677777764321           12345699999984      36677776   8999999


Q ss_pred             cccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          133 EATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +++...+...+.....  .+.++++||+++. ++.+|+|+++|
T Consensus       509 ~~t~~~i~~~l~~~~~--~~tvIivtHr~~~-l~~~D~ii~l~  548 (592)
T PRK10790        509 SGTEQAIQQALAAVRE--HTTLVVIAHRLST-IVEADTILVLH  548 (592)
T ss_pred             HHHHHHHHHHHHHHhC--CCEEEEEecchHH-HHhCCEEEEEE
Confidence            9998888888866543  4889999999965 55699999997

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.89  E-value=5.7e-24  Score=188.06  Aligned_cols=159  Identities=13%  Similarity=0.032  Sum_probs=116.1

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcccccccc---------chheeehhhhcc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVC---------SFILIRRAYFFK   74 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~---------~~~~l~~~~lg~   74 (183)
                      +++|++  |+|.+|+++||+||||||||||+++|+|+++|++|+|.+ |.++.  .++.         ..+..+.+....
T Consensus       332 ~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~~--i~y~~q~~~~l~~~~tv~e~l~~~~  408 (635)
T PRK11147        332 KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKLE--VAYFDQHRAELDPEKTVMDNLAEGK  408 (635)
T ss_pred             eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCcE--EEEEeCcccccCCCCCHHHHHHhhc
Confidence            357875  569999999999999999999999999999999999998 54321  0000         011111111110


Q ss_pred             CCCCccccccccchHHHHHHHHcCCC-CccCCCCCCCChhhhhe------ecCchhhc---ccccccCccccccccccee
Q 036195           75 LPNLKSICHEALAFPCLERIYVHGCP-SLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLI  144 (183)
Q Consensus        75 lp~l~~l~~~~~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~  144 (183)
                       +.   ...........++++.+++. ...++++.+|||||+++      +..+|+++   ||....|+..+..+..++.
T Consensus       409 -~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~  484 (635)
T PRK11147        409 -QE---VMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLD  484 (635)
T ss_pred             -cc---ccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHH
Confidence             00   00000122456778888885 56789999999999983      36778886   8999999999998888886


Q ss_pred             ecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          145 ITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ..    ..+|+++|||++++...||+++.++
T Consensus       485 ~~----~~tvi~vSHd~~~~~~~~d~i~~l~  511 (635)
T PRK11147        485 SY----QGTVLLVSHDRQFVDNTVTECWIFE  511 (635)
T ss_pred             hC----CCeEEEEECCHHHHHHhcCEEEEEe
Confidence            54    3589999999999999999999885

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=99.88  E-value=9.6e-24  Score=188.74  Aligned_cols=160  Identities=12%  Similarity=0.027  Sum_probs=118.5

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|+++  ++++||.+||+||||||||||+++|+|+++|++|+|.++|.++.+..    ... -+..++++||...++.
T Consensus       492 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~----~~~-lr~~i~~v~Q~~~lf~  566 (710)
T TIGR03796       492 PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIP----REV-LANSVAMVDQDIFLFE  566 (710)
T ss_pred             CCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCC----HHH-HHhheeEEecCChhhh
Confidence            4688855  58999999999999999999999999999999999999999876421    011 1234566666554443


Q ss_pred             c------------ccchHHHHHHHHcCCCCc-----------cCCCCCCCChhhhhe------ecCchhhc---cccccc
Q 036195           84 E------------ALAFPCLERIYVHGCPSL-----------RKLPFSLESGKRNGV------LIGEEEWW---NQLEWD  131 (183)
Q Consensus        84 ~------------~~~~~~l~vLe~l~L~~L-----------~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~  131 (183)
                      .            ....+..++++..++.+.           .......|||||+|+      +..+|+.+   |+.+..
T Consensus       567 gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~L  646 (710)
T TIGR03796       567 GTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSAL  646 (710)
T ss_pred             ccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccC
Confidence            1            123345566666665332           222345699999984      36777776   889999


Q ss_pred             CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      |+.+...+...+..    ..++++++||.++.+ +.+|++|.+|
T Consensus       647 D~~te~~i~~~l~~----~~~T~IiitHrl~~i-~~~D~Iivl~  685 (710)
T TIGR03796       647 DPETEKIIDDNLRR----RGCTCIIVAHRLSTI-RDCDEIIVLE  685 (710)
T ss_pred             CHHHHHHHHHHHHh----cCCEEEEEecCHHHH-HhCCEEEEEe
Confidence            99998888887763    368999999999765 5699999997

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.88  E-value=6.6e-24  Score=174.16  Aligned_cols=164  Identities=14%  Similarity=0.009  Sum_probs=119.6

Q ss_pred             cccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCC-----CCCcEEEEEecCccccccccchheeehhhhccCCCCc
Q 036195            7 PHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFS-----DMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK   79 (183)
Q Consensus         7 ~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~-----p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~   79 (183)
                      ++|+++  +|.+||++||+||||||||||+++|+|+.+     |++|+|.++|.++.....  .. ......++++|+..
T Consensus        96 ~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~--~~-~~lr~~i~~v~q~~  172 (329)
T PRK14257         96 HVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI--SS-LELRTRIGMVFQKP  172 (329)
T ss_pred             eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc--ch-HhhhccEEEEecCC
Confidence            578754  599999999999999999999999999986     579999999998742100  00 00011233344332


Q ss_pred             ccccc--------------ccch-----HHHHHHHHcCCC----CccCCCCCCCChhhhhe------ecCchhhc---cc
Q 036195           80 SICHE--------------ALAF-----PCLERIYVHGCP----SLRKLPFSLESGKRNGV------LIGEEEWW---NQ  127 (183)
Q Consensus        80 ~l~~~--------------~~~~-----~~l~vLe~l~L~----~L~~~~~~~LSgGqk~~------i~~~~~w~---~~  127 (183)
                      .++..              ....     ...++++.+++.    ...+.+...|||||+|+      ++.+|+.+   ||
T Consensus       173 ~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEP  252 (329)
T PRK14257        173 TPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEP  252 (329)
T ss_pred             ccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence            22210              0001     134456666653    34578889999999983      47777776   89


Q ss_pred             ccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          128 LEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       128 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +...|+.+...+...+..+..  .++++++||+++.++..||++++++
T Consensus       253 ts~LD~~~~~~i~~~i~~l~~--~~Tii~iTH~l~~i~~~~Driivl~  298 (329)
T PRK14257        253 TSALDPIATAKIEELILELKK--KYSIIIVTHSMAQAQRISDETVFFY  298 (329)
T ss_pred             cccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhCCEEEEEE
Confidence            999999999999999987754  3899999999999999999999996

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=99.88  E-value=1.3e-23  Score=182.92  Aligned_cols=163  Identities=15%  Similarity=0.110  Sum_probs=118.0

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|+++  ++++||.++|+||||||||||+++|+|+++|++|+|.++|.++....     .......++++||...++.
T Consensus       331 ~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~-----~~~~~~~i~~v~q~~~lf~  405 (544)
T TIGR01842       331 KPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWD-----RETFGKHIGYLPQDVELFP  405 (544)
T ss_pred             ccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCC-----HHHHhhheEEecCCccccc
Confidence            4688755  58999999999999999999999999999999999999998765421     0011123455555443332


Q ss_pred             c------------ccchHHHHHHHHcC-----------CCCccCCCCCCCChhhhhe------ecCchhhc---cccccc
Q 036195           84 E------------ALAFPCLERIYVHG-----------CPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWD  131 (183)
Q Consensus        84 ~------------~~~~~~l~vLe~l~-----------L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~  131 (183)
                      .            ....+..++++..+           +..........|||||+|+      +..+|+.+   |+....
T Consensus       406 ~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~L  485 (544)
T TIGR01842       406 GTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNL  485 (544)
T ss_pred             ccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccc
Confidence            1            11223333344333           3334445577899999984      36677776   899999


Q ss_pred             CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      |++++..+...+.....+ ...++++||+++ .++.+|+++++|
T Consensus       486 D~~~~~~i~~~l~~~~~~-~~tvi~ith~~~-~~~~~d~i~~l~  527 (544)
T TIGR01842       486 DEEGEQALANAIKALKAR-GITVVVITHRPS-LLGCVDKILVLQ  527 (544)
T ss_pred             CHHHHHHHHHHHHHHhhC-CCEEEEEeCCHH-HHHhCCEEEEEE
Confidence            999999998887765433 678999999998 467899999997

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.88  E-value=8.5e-24  Score=160.53  Aligned_cols=170  Identities=15%  Similarity=0.112  Sum_probs=119.9

Q ss_pred             ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccc------------------cchh
Q 036195            6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISV------------------CSFI   65 (183)
Q Consensus         6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~------------------~~~~   65 (183)
                      +++|.  +|+|.+|+++.|||.||||||||+++|+|-+.|++|+|.++|.++.+....                  ...+
T Consensus        19 k~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lT   98 (263)
T COG1101          19 KRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELT   98 (263)
T ss_pred             HHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCccccc
Confidence            45565  667999999999999999999999999999999999999999998763110                  0011


Q ss_pred             eeehhhhccCC-CCccccc--ccc-chHHHHHHHH--cCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccc
Q 036195           66 LIRRAYFFKLP-NLKSICH--EAL-AFPCLERIYV--HGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEW  130 (183)
Q Consensus        66 ~l~~~~lg~lp-~l~~l~~--~~~-~~~~l~vLe~--l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~  130 (183)
                      ..+++.+.... +.+.+..  +.. .....+.++.  ++++++.+.++.-|||||||.      ....|+.+   |...-
T Consensus        99 ieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAA  178 (263)
T COG1101          99 IEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAA  178 (263)
T ss_pred             HHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhhc
Confidence            11111111110 0111111  000 0011223333  456788899999999999992      36777775   66777


Q ss_pred             cCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          131 DDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       131 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      -||.+-..+-.+-..+..++-...+|++|+++-.++.-+|+|.+|
T Consensus       179 LDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh  223 (263)
T COG1101         179 LDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLH  223 (263)
T ss_pred             CCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEe
Confidence            788777777777777778889999999999999999999999876

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=99.88  E-value=7.6e-24  Score=184.46  Aligned_cols=164  Identities=15%  Similarity=-0.006  Sum_probs=118.6

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|+++  ++++||.++|+||||||||||+++|+|+++|++|+|.++|.++.+..    ...+ ...+++++|...++.
T Consensus       336 ~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~----~~~~-~~~i~~v~q~~~lf~  410 (547)
T PRK10522        336 GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQ----PEDY-RKLFSAVFTDFHLFD  410 (547)
T ss_pred             CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCC----HHHH-hhheEEEecChhHHH
Confidence            4588755  58999999999999999999999999999999999999998775421    0111 123455555544433


Q ss_pred             c--------ccchHHHHHHHHcCCCCccCCC-----CCCCChhhhhe------ecCchhhc---ccccccCccccccccc
Q 036195           84 E--------ALAFPCLERIYVHGCPSLRKLP-----FSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSS  141 (183)
Q Consensus        84 ~--------~~~~~~l~vLe~l~L~~L~~~~-----~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~  141 (183)
                      .        .......++++.+++....+.+     ...|||||+|+      +..+|+.+   |+....|++++..+..
T Consensus       411 ~ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~  490 (547)
T PRK10522        411 QLLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQ  490 (547)
T ss_pred             HhhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHH
Confidence            2        1122345677777776543332     35899999984      36677776   8899999988888766


Q ss_pred             ceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          142 KLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      .+........++++++||+++ +++.+|+++.+|
T Consensus       491 ~l~~~~~~~~~tvi~itH~~~-~~~~~d~i~~l~  523 (547)
T PRK10522        491 VLLPLLQEMGKTIFAISHDDH-YFIHADRLLEMR  523 (547)
T ss_pred             HHHHHHHhCCCEEEEEEechH-HHHhCCEEEEEE
Confidence            654332223678999999995 578899999997

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=99.88  E-value=1.4e-23  Score=187.58  Aligned_cols=160  Identities=10%  Similarity=0.062  Sum_probs=116.0

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|+++  ++++||.++|+||||||||||+++|+|+++|++|+|.++|.++.+..     .......+++++|...++.
T Consensus       494 ~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~-----~~~lr~~i~~v~Q~~~lF~  568 (711)
T TIGR00958       494 VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYD-----HHYLHRQVALVGQEPVLFS  568 (711)
T ss_pred             CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcC-----HHHHHhhceEEecCccccc
Confidence            4688855  58999999999999999999999999999999999999998876421     0111124566666554443


Q ss_pred             c------------ccchHHHHHHHHcCCCCcc-----------CCCCCCCChhhhhee------cCchhhc---cccccc
Q 036195           84 E------------ALAFPCLERIYVHGCPSLR-----------KLPFSLESGKRNGVL------IGEEEWW---NQLEWD  131 (183)
Q Consensus        84 ~------------~~~~~~l~vLe~l~L~~L~-----------~~~~~~LSgGqk~~i------~~~~~w~---~~l~~~  131 (183)
                      .            ..+.+..++++..++.+..           ......|||||||+|      ..+|+.+   |+.+-.
T Consensus       569 gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaL  648 (711)
T TIGR00958       569 GSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSAL  648 (711)
T ss_pred             cCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEcccccc
Confidence            2            1223456667776654321           222356999999843      5566665   889999


Q ss_pred             CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      |+++...++. ..   ....++++++||+++. ++.+|+||.+|
T Consensus       649 D~~te~~i~~-~~---~~~~~TvIiItHrl~~-i~~aD~IivL~  687 (711)
T TIGR00958       649 DAECEQLLQE-SR---SRASRTVLLIAHRLST-VERADQILVLK  687 (711)
T ss_pred             CHHHHHHHHH-hh---ccCCCeEEEEeccHHH-HHhCCEEEEEE
Confidence            9988888877 11   2236899999999975 57799999997

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=99.88  E-value=9.6e-24  Score=183.08  Aligned_cols=161  Identities=15%  Similarity=0.080  Sum_probs=119.3

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|+++  ++++||.++|+||||||||||+++|+|+++|++|+|.++|.++.+..    ... -+..+++++|...++.
T Consensus       335 ~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~----~~~-lr~~i~~v~Q~~~lf~  409 (529)
T TIGR02857       335 APALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADAD----ADS-WRDQIAWVPQHPFLFA  409 (529)
T ss_pred             cccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCC----HHH-HHhheEEEcCCCcccC
Confidence            4688865  58999999999999999999999999999999999999999876421    011 1124566666554443


Q ss_pred             c------------ccchHHHHHHHHcCCCCcc-----------CCCCCCCChhhhhe------ecCchhhc---cccccc
Q 036195           84 E------------ALAFPCLERIYVHGCPSLR-----------KLPFSLESGKRNGV------LIGEEEWW---NQLEWD  131 (183)
Q Consensus        84 ~------------~~~~~~l~vLe~l~L~~L~-----------~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~  131 (183)
                      .            ....+..++++.+++.+..           ......|||||+|+      +..+|+.+   |+..--
T Consensus       410 ~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~l  489 (529)
T TIGR02857       410 GTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHL  489 (529)
T ss_pred             cCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCccccc
Confidence            2            1123456677777664322           22346799999984      36677876   889999


Q ss_pred             CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEE
Q 036195          132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICI  174 (183)
Q Consensus       132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (183)
                      |+.+...+...+....  ..+.++++||+++. ++.+|+++++
T Consensus       490 D~~~~~~i~~~l~~~~--~~~t~i~itH~~~~-~~~~d~i~~l  529 (529)
T TIGR02857       490 DAETEALVTEALRALA--QGRTVLLVTHRLAL-AERADRIVVL  529 (529)
T ss_pred             CHHHHHHHHHHHHHhc--CCCEEEEEecCHHH-HHhCCEEEeC
Confidence            9999998888887654  36899999999976 4789999875

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.88  E-value=1.8e-23  Score=183.42  Aligned_cols=161  Identities=11%  Similarity=-0.001  Sum_probs=119.0

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|+++  ++++||.+||+||||||||||+++|+|++ |++|+|.++|.++.+..    ...+ +..++++||...++.
T Consensus       363 ~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~----~~~l-r~~i~~v~Q~~~LF~  436 (588)
T PRK11174        363 KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELD----PESW-RKHLSWVGQNPQLPH  436 (588)
T ss_pred             CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCC----HHHH-HhheEEecCCCcCCC
Confidence            4688855  58999999999999999999999999999 99999999998876421    1111 135667777655553


Q ss_pred             c------------ccchHHHHHHHHcCCCC-----------ccCCCCCCCChhhhhe------ecCchhhc---cccccc
Q 036195           84 E------------ALAFPCLERIYVHGCPS-----------LRKLPFSLESGKRNGV------LIGEEEWW---NQLEWD  131 (183)
Q Consensus        84 ~------------~~~~~~l~vLe~l~L~~-----------L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~  131 (183)
                      .            ....+..++++..++.+           ........|||||||+      +..+|+.+   |+..--
T Consensus       437 ~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaL  516 (588)
T PRK11174        437 GTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASL  516 (588)
T ss_pred             cCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCC
Confidence            2            22334566666655532           2223345699999984      36677776   889999


Q ss_pred             CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      |.++...+...+.....  .+++++++|+++ +++.+|+++++|
T Consensus       517 D~~te~~i~~~l~~~~~--~~TvIiItHrl~-~i~~aD~Iivl~  557 (588)
T PRK11174        517 DAHSEQLVMQALNAASR--RQTTLMVTHQLE-DLAQWDQIWVMQ  557 (588)
T ss_pred             CHHHHHHHHHHHHHHhC--CCEEEEEecChH-HHHhCCEEEEEe
Confidence            99998888877765532  578999999995 467799999997

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=99.88  E-value=1.5e-23  Score=182.98  Aligned_cols=162  Identities=15%  Similarity=0.028  Sum_probs=116.9

Q ss_pred             cccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195            7 PHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE   84 (183)
Q Consensus         7 ~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~   84 (183)
                      ++|+++  ++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....    .. ....+++++|...++..
T Consensus       356 ~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~----~~-~~~~i~~v~q~~~lf~~  430 (555)
T TIGR01194       356 FALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSR----DD-YRDLFSAIFADFHLFDD  430 (555)
T ss_pred             ceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH----HH-HHhhCcEEccChhhhhh
Confidence            588855  589999999999999999999999999999999999999988764210    00 01224444443333321


Q ss_pred             ---------ccchHHHHHHHHcCCCCccCC-C-----CCCCChhhhhe------ecCchhhc---ccccccCcccccccc
Q 036195           85 ---------ALAFPCLERIYVHGCPSLRKL-P-----FSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFS  140 (183)
Q Consensus        85 ---------~~~~~~l~vLe~l~L~~L~~~-~-----~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~  140 (183)
                               ....+..++++.+++.+..+. |     ...|||||+|+      +..+|+.+   |+....|++++..+.
T Consensus       431 ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~  510 (555)
T TIGR01194       431 LIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFY  510 (555)
T ss_pred             hhhcccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHH
Confidence                     122345677888887654332 2     25799999984      36677776   889999999988886


Q ss_pred             cc-eeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          141 SK-LIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       141 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      .. +.... ...+.++++||+++ +++.+|+++.+|
T Consensus       511 ~~l~~~~~-~~~~tiiiisH~~~-~~~~~d~i~~l~  544 (555)
T TIGR01194       511 EELLPDLK-RQGKTIIIISHDDQ-YFELADQIIKLA  544 (555)
T ss_pred             HHHHHHHH-hCCCEEEEEeccHH-HHHhCCEEEEEE
Confidence            54 33332 23689999999997 568999999997

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=99.88  E-value=1.2e-23  Score=187.81  Aligned_cols=162  Identities=15%  Similarity=0.097  Sum_probs=119.7

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|+++  ++++||.+||+||||||||||+++|+|+++|++|+|.++|.++.+..    ...+ +..+++++|...++.
T Consensus       478 ~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~----~~~l-r~~i~~v~Q~~~lf~  552 (694)
T TIGR03375       478 TPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQID----PADL-RRNIGYVPQDPRLFY  552 (694)
T ss_pred             ccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCC----HHHH-HhccEEECCChhhhh
Confidence            4688755  58999999999999999999999999999999999999998876421    1111 134566666554442


Q ss_pred             c------------ccchHHHHHHHHcCCCCc-----------cCCCCCCCChhhhhe------ecCchhhc---cccccc
Q 036195           84 E------------ALAFPCLERIYVHGCPSL-----------RKLPFSLESGKRNGV------LIGEEEWW---NQLEWD  131 (183)
Q Consensus        84 ~------------~~~~~~l~vLe~l~L~~L-----------~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~  131 (183)
                      .            ....+..++++..++.+.           .......|||||+|+      +..+|+.+   |+.+--
T Consensus       553 ~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~L  632 (694)
T TIGR03375       553 GTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAM  632 (694)
T ss_pred             hhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Confidence            1            223345566666655322           222335699999984      36778876   889999


Q ss_pred             CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      |+++...+...+..+..  .+.++++||+++. ++.+|+++++|
T Consensus       633 D~~te~~i~~~l~~~~~--~~T~iiItHrl~~-~~~~D~iivl~  673 (694)
T TIGR03375       633 DNRSEERFKDRLKRWLA--GKTLVLVTHRTSL-LDLVDRIIVMD  673 (694)
T ss_pred             CHHHHHHHHHHHHHHhC--CCEEEEEecCHHH-HHhCCEEEEEe
Confidence            99999988888765543  5889999999975 57899999997

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>PLN03211 ABC transporter G-25; Provisional

Probab=99.88  E-value=1.1e-23  Score=186.34  Aligned_cols=169  Identities=14%  Similarity=0.055  Sum_probs=121.3

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCC--CcEEEEEecCcccc----ccc--------cchheeeh
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDM--SHKFAIYAVSLQKK----ISV--------CSFILIRR   69 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~--~G~I~~~g~~~~~~----~~~--------~~~~~l~~   69 (183)
                      +++|+++  ++++||++||+||||||||||+++|+|..+|+  +|+|.++|+++...    ..+        ...+..+.
T Consensus        81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~  160 (659)
T PLN03211         81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRET  160 (659)
T ss_pred             CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHHH
Confidence            5688865  59999999999999999999999999999885  99999999865321    000        00111111


Q ss_pred             hhhccCCCCc-cccccccchHHHHHHHHcCCCCccC-----CCCCCCChhhhhe------ecCchhhc---ccccccCcc
Q 036195           70 AYFFKLPNLK-SICHEALAFPCLERIYVHGCPSLRK-----LPFSLESGKRNGV------LIGEEEWW---NQLEWDDEA  134 (183)
Q Consensus        70 ~~lg~lp~l~-~l~~~~~~~~~l~vLe~l~L~~L~~-----~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~  134 (183)
                      +.+....... ..........+.++++.+++.+.++     ..+..|||||||+      +..+|+.+   ||....|..
T Consensus       161 l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~  240 (659)
T PLN03211        161 LVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDAT  240 (659)
T ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHH
Confidence            1111000000 0000001123567888899977653     4567899999983      36778876   899999999


Q ss_pred             cccccccceeecCcccccCCCCCCceee-eeecccceEEEEe
Q 036195          135 TKHVFSSKLIITTPQTVISIPQPSYTYE-ATIRPRYELICID  175 (183)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  175 (183)
                      ++..+..++..+..+ .++|++++|+.+ .+.+.+|+++.++
T Consensus       241 ~~~~l~~~L~~l~~~-g~TvI~~sH~~~~~i~~~~D~iilL~  281 (659)
T PLN03211        241 AAYRLVLTLGSLAQK-GKTIVTSMHQPSSRVYQMFDSVLVLS  281 (659)
T ss_pred             HHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEec
Confidence            999999999888764 889999999999 4789999999986

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=99.88  E-value=1.5e-23  Score=183.22  Aligned_cols=162  Identities=15%  Similarity=0.112  Sum_probs=120.2

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|+++  ++++||.++|+|+||||||||+++|+|+++|++|+|.++|.++.+..     .......++++||...++.
T Consensus       345 ~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~-----~~~~~~~i~~v~Q~~~lf~  419 (571)
T TIGR02203       345 RPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYT-----LASLRRQVALVSQDVVLFN  419 (571)
T ss_pred             CccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcC-----HHHHHhhceEEccCccccc
Confidence            4688855  58999999999999999999999999999999999999998765321     0111134566666554443


Q ss_pred             c-------------ccchHHHHHHHHcCCCCccC-C----------CCCCCChhhhhe------ecCchhhc---ccccc
Q 036195           84 E-------------ALAFPCLERIYVHGCPSLRK-L----------PFSLESGKRNGV------LIGEEEWW---NQLEW  130 (183)
Q Consensus        84 ~-------------~~~~~~l~vLe~l~L~~L~~-~----------~~~~LSgGqk~~------i~~~~~w~---~~l~~  130 (183)
                      .             ....+..++++.+++.+... .          ....|||||||+      +..+|+++   ||.+.
T Consensus       420 ~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~  499 (571)
T TIGR02203       420 DTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSA  499 (571)
T ss_pred             ccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccc
Confidence            2             12234566777777643221 1          234699999984      36777776   89999


Q ss_pred             cCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          131 DDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       131 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      .|+.+...+...+.....  .+.++++||+.+. ++.||+||.+|
T Consensus       500 LD~~~~~~i~~~L~~~~~--~~tiIiitH~~~~-~~~~D~ii~l~  541 (571)
T TIGR02203       500 LDNESERLVQAALERLMQ--GRTTLVIAHRLST-IEKADRIVVMD  541 (571)
T ss_pred             CCHHHHHHHHHHHHHHhC--CCEEEEEehhhHH-HHhCCEEEEEe
Confidence            999999999888875532  4889999999965 68899999986

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=99.88  E-value=2.7e-23  Score=185.83  Aligned_cols=161  Identities=18%  Similarity=0.095  Sum_probs=118.1

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|+++  ++++||.+||+||||||||||+++|+|+++|++|+|.++|.++.+..    ...+ +..++++||...++.
T Consensus       487 ~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~----~~~l-r~~i~~v~Q~~~lf~  561 (708)
T TIGR01193       487 SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDID----RHTL-RQFINYLPQEPYIFS  561 (708)
T ss_pred             CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcC----HHHH-HHheEEEecCceehh
Confidence            4688855  58999999999999999999999999999999999999998876421    1111 134566666544443


Q ss_pred             c-------------ccchHHHHHHHHcCCCC-----------ccCCCCCCCChhhhhee------cCchhhc---ccccc
Q 036195           84 E-------------ALAFPCLERIYVHGCPS-----------LRKLPFSLESGKRNGVL------IGEEEWW---NQLEW  130 (183)
Q Consensus        84 ~-------------~~~~~~l~vLe~l~L~~-----------L~~~~~~~LSgGqk~~i------~~~~~w~---~~l~~  130 (183)
                      .             ....+..++++..++.+           ........|||||+|+|      ..+|..+   |+.+.
T Consensus       562 gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~  641 (708)
T TIGR01193       562 GSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSN  641 (708)
T ss_pred             HHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCcccc
Confidence            1             11234455666555532           22233456999999843      5667765   88999


Q ss_pred             cCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          131 DDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       131 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      .|++++..+...+...  + .++++++||+++ +++.+|+++.+|
T Consensus       642 LD~~te~~i~~~L~~~--~-~~T~IiitHr~~-~~~~~D~i~~l~  682 (708)
T TIGR01193       642 LDTITEKKIVNNLLNL--Q-DKTIIFVAHRLS-VAKQSDKIIVLD  682 (708)
T ss_pred             CCHHHHHHHHHHHHHh--c-CCEEEEEecchH-HHHcCCEEEEEE
Confidence            9999999888887653  2 578899999997 567899999997

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=99.87  E-value=3.2e-23  Score=166.82  Aligned_cols=157  Identities=9%  Similarity=0.038  Sum_probs=103.5

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcc---ccccccchheeehhhhccCCCCcc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ---KKISVCSFILIRRAYFFKLPNLKS   80 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~---~~~~~~~~~~l~~~~lg~lp~l~~   80 (183)
                      +++|++  |++.+||+++|+||||||||||+++|+|+++|++|+|.++|. +.   ........+..+.+.++.      
T Consensus        50 ~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~-i~yv~q~~~l~~~tv~enl~~~~------  122 (282)
T cd03291          50 APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGR-ISFSSQFSWIMPGTIKENIIFGV------  122 (282)
T ss_pred             ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCE-EEEEeCcccccccCHHHHhhccc------
Confidence            457775  569999999999999999999999999999999999998773 11   000000001111111100      


Q ss_pred             ccccccchHHHHHHHHcCCCC-----------ccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccc
Q 036195           81 ICHEALAFPCLERIYVHGCPS-----------LRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFS  140 (183)
Q Consensus        81 l~~~~~~~~~l~vLe~l~L~~-----------L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~  140 (183)
                         ........++++.+++..           ..+.++.+||+||+|+      +..+|+.+   ||+...|+..+..+.
T Consensus       123 ---~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~  199 (282)
T cd03291         123 ---SYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIF  199 (282)
T ss_pred             ---ccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHH
Confidence               000111122333333321           2234567999999983      36677776   899999999988887


Q ss_pred             cce-eecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          141 SKL-IITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       141 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ..+ ..+. + ..+|+++||+++.+ +.||+++.++
T Consensus       200 ~~ll~~~~-~-~~tIiiisH~~~~~-~~~d~i~~l~  232 (282)
T cd03291         200 ESCVCKLM-A-NKTRILVTSKMEHL-KKADKILILH  232 (282)
T ss_pred             HHHHHHhh-C-CCEEEEEeCChHHH-HhCCEEEEEE
Confidence            643 3333 2 47899999999986 6899999985

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.87  E-value=7.8e-24  Score=156.47  Aligned_cols=131  Identities=18%  Similarity=0.139  Sum_probs=103.7

Q ss_pred             cccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195            7 PHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE   84 (183)
Q Consensus         7 ~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~   84 (183)
                      ++++  ++++++|++++|+||||||||||+++|+|+++|++|+|+++|.++....     .......+++.++       
T Consensus        13 ~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~-----~~~~~~~i~~~~q-------   80 (157)
T cd00267          13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLP-----LEELRRRIGYVPQ-------   80 (157)
T ss_pred             eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCC-----HHHHHhceEEEee-------
Confidence            4565  5568999999999999999999999999999999999999997654210     0000011222221       


Q ss_pred             ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCcccccCCC
Q 036195           85 ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIP  155 (183)
Q Consensus        85 ~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~  155 (183)
                                               ||+||+|+      ++.+|+.+   ||....|...+..+...+.....+ ...++
T Consensus        81 -------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~-~~tii  134 (157)
T cd00267          81 -------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEE-GRTVI  134 (157)
T ss_pred             -------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEE
Confidence                                     99999883      36677776   889999999999999999877665 67899


Q ss_pred             CCCceeeeeecccceEEEEe
Q 036195          156 QPSYTYEATIRPRYELICID  175 (183)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ++||+++.+...||+++.++
T Consensus       135 ~~sh~~~~~~~~~d~i~~l~  154 (157)
T cd00267         135 IVTHDPELAELAADRVIVLK  154 (157)
T ss_pred             EEeCCHHHHHHhCCEEEEEe
Confidence            99999999999999999885

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.87  E-value=1.7e-23  Score=154.03  Aligned_cols=163  Identities=16%  Similarity=0.060  Sum_probs=115.0

Q ss_pred             ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccC-------CC
Q 036195            7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKL-------PN   77 (183)
Q Consensus         7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~l-------p~   77 (183)
                      +||++  |.|++||.++|+||+||||||||-+++|+..|++|+|++.|+++.+..... ...++...++++       |.
T Consensus        24 ~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~-rA~~R~~~vGfVFQSF~Lip~  102 (228)
T COG4181          24 SILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDA-RAALRARHVGFVFQSFHLIPN  102 (228)
T ss_pred             eEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHH-HHHhhccceeEEEEeeecccc
Confidence            56764  559999999999999999999999999999999999999999876531100 000111111111       11


Q ss_pred             Ccccc--------cc---cc-chHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccc
Q 036195           78 LKSIC--------HE---AL-AFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATK  136 (183)
Q Consensus        78 l~~l~--------~~---~~-~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~  136 (183)
                      +..+.        +.   .. .......++.+|+.....-++.+|||||+|+      ++..|+.+   ||..--|.++-
T Consensus       103 ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg  182 (228)
T COG4181         103 LTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATG  182 (228)
T ss_pred             chhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHH
Confidence            11000        00   00 1124667889999998889999999998883      36777776   77777787777


Q ss_pred             cccccceeecCcccccCCCCCCceeeeeecccce
Q 036195          137 HVFSSKLIITTPQTVISIPQPSYTYEATIRPRYE  170 (183)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (183)
                      ..+..++-.+.-+...+..+++||....-|+.-+
T Consensus       183 ~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~  216 (228)
T COG4181         183 DKIADLLFALNRERGTTLVLVTHDPQLAARCDRQ  216 (228)
T ss_pred             HHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhhe
Confidence            7777777777777789999999998776665433

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.87  E-value=8.5e-24  Score=160.35  Aligned_cols=165  Identities=15%  Similarity=0.018  Sum_probs=114.9

Q ss_pred             cccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCC-----cEEEEEecCcccccc---------------cc
Q 036195            5 YRPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMS-----HKFAIYAVSLQKKIS---------------VC   62 (183)
Q Consensus         5 ~~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~-----G~I~~~g~~~~~~~~---------------~~   62 (183)
                      .+.+|+++  +|.+++++|+|||||||||||||+++.+....+     |+|.++|+++-....               ..
T Consensus        19 ~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPn   98 (253)
T COG1117          19 DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPN   98 (253)
T ss_pred             chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCC
Confidence            34567754  589999999999999999999999999988765     999999998765310               01


Q ss_pred             chheeehhhhccCCCCccccccccchHHHHHHHHcCC----CCccCCCCCCCChhhhhe------ecCchhhc---cccc
Q 036195           63 SFILIRRAYFFKLPNLKSICHEALAFPCLERIYVHGC----PSLRKLPFSLESGKRNGV------LIGEEEWW---NQLE  129 (183)
Q Consensus        63 ~~~~l~~~~lg~lp~l~~l~~~~~~~~~l~vLe~l~L----~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~  129 (183)
                      +||..-+-.+.|-+++..+........+.+.+....+    .+..+.+...|||||+|+      |+-+|+-+   ||.+
T Consensus        99 PFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtS  178 (253)
T COG1117          99 PFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTS  178 (253)
T ss_pred             CCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCccc
Confidence            1111111111111111111111111123334444444    245667778899999883      58889886   8899


Q ss_pred             ccCcccccccccceeecCcccccCCCCCCceeeeeecccceE
Q 036195          130 WDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYEL  171 (183)
Q Consensus       130 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (183)
                      -.||.+-..++.++..++.  .-+|.|++||+.-+.|.||+.
T Consensus       179 ALDPIsT~kIEeLi~eLk~--~yTIviVTHnmqQAaRvSD~t  218 (253)
T COG1117         179 ALDPISTLKIEELITELKK--KYTIVIVTHNMQQAARVSDYT  218 (253)
T ss_pred             ccCchhHHHHHHHHHHHHh--ccEEEEEeCCHHHHHHHhHhh
Confidence            9999999999999999984  478999999999999999976

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=99.87  E-value=3.2e-23  Score=183.57  Aligned_cols=167  Identities=14%  Similarity=0.052  Sum_probs=125.4

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|++  |++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...... .........+++.++...++.
T Consensus        21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~-~~~~~~~~~i~~v~q~~~l~~   99 (648)
T PRK10535         21 VEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDAD-ALAQLRREHFGFIFQRYHLLS   99 (648)
T ss_pred             eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHH-HHHHHHhccEEEEeCCcccCC
Confidence            357875  45899999999999999999999999999999999999999876431000 000000112233333222221


Q ss_pred             c-------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195           84 E-------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT  135 (183)
Q Consensus        84 ~-------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~  135 (183)
                      .                   .......++++.+++....+.++.+||+||+|+      +..+|+.+   ||....|+.+
T Consensus       100 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s  179 (648)
T PRK10535        100 HLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHS  179 (648)
T ss_pred             CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHH
Confidence            1                   011235677888999999999999999999983      47788887   8999999999


Q ss_pred             ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+..++..+..+ ..+++++||+++.+ ..||+++.++
T Consensus       180 ~~~l~~ll~~l~~~-g~tilivsH~~~~~-~~~d~i~~l~  217 (648)
T PRK10535        180 GEEVMAILHQLRDR-GHTVIIVTHDPQVA-AQAERVIEIR  217 (648)
T ss_pred             HHHHHHHHHHHHhc-CCEEEEECCCHHHH-HhCCEEEEEE
Confidence            99999999887644 78999999999976 5699999986

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=99.87  E-value=4.7e-23  Score=180.78  Aligned_cols=162  Identities=12%  Similarity=0.062  Sum_probs=116.6

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++++++  ++++||.++|+||||||||||+++|+|+++|++|+|.++|.++.+..    ...+ ...+++++|...++.
T Consensus       348 ~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~----~~~~-~~~i~~v~q~~~lf~  422 (585)
T TIGR01192       348 SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVT----RESL-RKSIATVFQDAGLFN  422 (585)
T ss_pred             CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCC----HHHH-HhheEEEccCCccCc
Confidence            3578755  58999999999999999999999999999999999999998765321    0001 123445555443332


Q ss_pred             c------------ccchHHHHHHHHcCC-----------CCccCCCCCCCChhhhhe------ecCchhhc---cccccc
Q 036195           84 E------------ALAFPCLERIYVHGC-----------PSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWD  131 (183)
Q Consensus        84 ~------------~~~~~~l~vLe~l~L-----------~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~  131 (183)
                      .            ....+..++++..++           ..........|||||+|+      +..+|+++   |+....
T Consensus       423 ~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~L  502 (585)
T TIGR01192       423 RSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSAL  502 (585)
T ss_pred             ccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCC
Confidence            1            112223334443333           223345567899999984      36788886   899999


Q ss_pred             CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      |++++..+...+.....  .+.++++||+++.+ +.+|+++.+|
T Consensus       503 D~~~~~~i~~~l~~~~~--~~tvI~isH~~~~~-~~~d~i~~l~  543 (585)
T TIGR01192       503 DVETEARVKNAIDALRK--NRTTFIIAHRLSTV-RNADLVLFLD  543 (585)
T ss_pred             CHHHHHHHHHHHHHHhC--CCEEEEEEcChHHH-HcCCEEEEEE
Confidence            99999999888876532  68899999999776 6799999996

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.87  E-value=6.6e-23  Score=179.32  Aligned_cols=162  Identities=16%  Similarity=0.126  Sum_probs=116.9

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|+++  ++++|++++|+||||||||||+++|+|+++|++|+|.++|.++....    ... ....+++++|...++.
T Consensus       328 ~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~----~~~-~~~~i~~v~q~~~lf~  402 (569)
T PRK10789        328 HPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQ----LDS-WRSRLAVVSQTPFLFS  402 (569)
T ss_pred             CccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCC----HHH-HHhheEEEccCCeecc
Confidence            4578755  58999999999999999999999999999999999999998765321    000 0123444454433332


Q ss_pred             ------------cccchHHHHHHHHcCCCC-----------ccCCCCCCCChhhhhe------ecCchhhc---cccccc
Q 036195           84 ------------EALAFPCLERIYVHGCPS-----------LRKLPFSLESGKRNGV------LIGEEEWW---NQLEWD  131 (183)
Q Consensus        84 ------------~~~~~~~l~vLe~l~L~~-----------L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~  131 (183)
                                  +....+..++++.+++.+           ........|||||+|+      +..+|+.|   |+...-
T Consensus       403 ~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~L  482 (569)
T PRK10789        403 DTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAV  482 (569)
T ss_pred             ccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccC
Confidence                        112223455555555432           2233456799999984      36777876   889999


Q ss_pred             CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      |+.++..+...+....  ..+.++++||+++. ++.+|+++.+|
T Consensus       483 D~~~~~~i~~~l~~~~--~~~tii~itH~~~~-~~~~d~i~~l~  523 (569)
T PRK10789        483 DGRTEHQILHNLRQWG--EGRTVIISAHRLSA-LTEASEILVMQ  523 (569)
T ss_pred             CHHHHHHHHHHHHHHh--CCCEEEEEecchhH-HHcCCEEEEEe
Confidence            9999998888887653  26789999999965 57799999996

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.87  E-value=1.9e-23  Score=154.98  Aligned_cols=168  Identities=12%  Similarity=0.046  Sum_probs=127.9

Q ss_pred             cccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccc-cchheeehhhhccC-CCCcccc
Q 036195            7 PHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISV-CSFILIRRAYFFKL-PNLKSIC   82 (183)
Q Consensus         7 ~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~-~~~~~l~~~~lg~l-p~l~~l~   82 (183)
                      .||+  ||+...|++++|||.+||||||+||+|+-|.+|+.|.|.++|+.+.-.... ..........+.++ .++.++|
T Consensus        20 eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVF   99 (256)
T COG4598          20 EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVF   99 (256)
T ss_pred             hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhh
Confidence            4666  455789999999999999999999999999999999999999876532110 00000111111111 2344566


Q ss_pred             ccccchHH--------------------------HHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---cc
Q 036195           83 HEALAFPC--------------------------LERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQ  127 (183)
Q Consensus        83 ~~~~~~~~--------------------------l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~  127 (183)
                      |++..|..                          +..+..+|+.+.++.++..|||||+|+      ++++|+-.   ||
T Consensus       100 Q~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP~vmLFDEP  179 (256)
T COG4598         100 QHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEP  179 (256)
T ss_pred             hhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcCCceEeecCC
Confidence            65555433                          334667788899999999999999882      47888875   88


Q ss_pred             ccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          128 LEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       128 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      .+-.||+..-.....+..+..+ .++...++|.+.+....+..|+-+-
T Consensus       180 TSALDPElVgEVLkv~~~LAeE-grTMv~VTHEM~FAR~Vss~v~fLh  226 (256)
T COG4598         180 TSALDPELVGEVLKVMQDLAEE-GRTMVVVTHEMGFARDVSSHVIFLH  226 (256)
T ss_pred             cccCCHHHHHHHHHHHHHHHHh-CCeEEEEeeehhHHHhhhhheEEee
Confidence            8999999999899899888887 9999999999999999999999874

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=99.87  E-value=8.3e-23  Score=181.20  Aligned_cols=161  Identities=11%  Similarity=-0.008  Sum_probs=114.0

Q ss_pred             cccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCc-----cccccccchheeehhhhccCCCCc
Q 036195            7 PHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSL-----QKKISVCSFILIRRAYFFKLPNLK   79 (183)
Q Consensus         7 ~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-----~~~~~~~~~~~l~~~~lg~lp~l~   79 (183)
                      ++|+++  ++++||+++|+||||||||||+++|+|+++|++|+|.+++...     ++. .....+..+.+..+..  ..
T Consensus       466 ~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~-~l~~~tv~eni~~~~~--~~  542 (659)
T TIGR00954       466 VLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRP-YMTLGTLRDQIIYPDS--SE  542 (659)
T ss_pred             eeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCC-CCCCcCHHHHHhcCCC--hh
Confidence            578755  5899999999999999999999999999999999998864210     000 0000011111111100  00


Q ss_pred             cc-cccccchHHHHHHHHcCCCCccCCCC---------CCCChhhhhe------ecCchhhc---ccccccCcccccccc
Q 036195           80 SI-CHEALAFPCLERIYVHGCPSLRKLPF---------SLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFS  140 (183)
Q Consensus        80 ~l-~~~~~~~~~l~vLe~l~L~~L~~~~~---------~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~  140 (183)
                      .. .......+..++++.+++.++.+++.         ..|||||+|+      +..+|+++   ||....|+..+..++
T Consensus       543 ~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~  622 (659)
T TIGR00954       543 DMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMY  622 (659)
T ss_pred             hhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHH
Confidence            00 01112335677888899887666654         7899999983      37788887   899999999998888


Q ss_pred             cceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          141 SKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ..+..    ..++++++||+++. .+.+|+++.+|
T Consensus       623 ~~l~~----~~~tvI~isH~~~~-~~~~d~il~l~  652 (659)
T TIGR00954       623 RLCRE----FGITLFSVSHRKSL-WKYHEYLLYMD  652 (659)
T ss_pred             HHHHH----cCCEEEEEeCchHH-HHhCCEEEEEe
Confidence            77653    26889999999987 58899999997

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=99.87  E-value=8.6e-23  Score=178.66  Aligned_cols=162  Identities=14%  Similarity=0.077  Sum_probs=119.2

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|+++  ++++||.++|+||||||||||+++|+|+++|++|+|.++|.++.+..    ... -...++++||...++.
T Consensus       353 ~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~----~~~-~~~~i~~~~Q~~~lf~  427 (576)
T TIGR02204       353 QPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLD----PAE-LRARMALVPQDPVLFA  427 (576)
T ss_pred             CccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcC----HHH-HHHhceEEccCCcccc
Confidence            4588855  58999999999999999999999999999999999999998775421    011 1134666677654443


Q ss_pred             c------------ccchHHHHHHHHcCCCCc-----------cCCCCCCCChhhhhe------ecCchhhc---cccccc
Q 036195           84 E------------ALAFPCLERIYVHGCPSL-----------RKLPFSLESGKRNGV------LIGEEEWW---NQLEWD  131 (183)
Q Consensus        84 ~------------~~~~~~l~vLe~l~L~~L-----------~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~  131 (183)
                      .            ....+..++++.+++.+.           .......|||||+|+      +..+|+++   ||.+-.
T Consensus       428 ~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~l  507 (576)
T TIGR02204       428 ASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSAL  507 (576)
T ss_pred             ccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCccccc
Confidence            2            112345566666665321           122345699999984      36677776   899999


Q ss_pred             CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      |+.++..+...+.....  .+.++++||+++. ++.+|+|+.+|
T Consensus       508 D~~~~~~i~~~l~~~~~--~~t~IiitH~~~~-~~~~d~vi~l~  548 (576)
T TIGR02204       508 DAESEQLVQQALETLMK--GRTTLIIAHRLAT-VLKADRIVVMD  548 (576)
T ss_pred             CHHHHHHHHHHHHHHhC--CCEEEEEecchHH-HHhCCEEEEEE
Confidence            99998888887776532  5899999999966 57799999886

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=99.86  E-value=6.6e-23  Score=181.58  Aligned_cols=161  Identities=18%  Similarity=0.127  Sum_probs=119.4

Q ss_pred             ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195            7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE   84 (183)
Q Consensus         7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~   84 (183)
                      ++|++  |+|++||.+||+|+||||||||+|+|+|+++|++|+|.++|.|+..-.     ...-+..+++++|...++..
T Consensus       487 ~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~-----~~~lR~~ig~V~Q~~~Lf~g  561 (709)
T COG2274         487 PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDID-----LASLRRQVGYVLQDPFLFSG  561 (709)
T ss_pred             chhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcC-----HHHHHhheeEEcccchhhcC
Confidence            57775  569999999999999999999999999999999999999999886521     11112457777776655532


Q ss_pred             ------------ccchHHHHHHHHcCCCC-------ccC----CCCCCCChhhhhe------ecCchhhc---ccccccC
Q 036195           85 ------------ALAFPCLERIYVHGCPS-------LRK----LPFSLESGKRNGV------LIGEEEWW---NQLEWDD  132 (183)
Q Consensus        85 ------------~~~~~~l~vLe~l~L~~-------L~~----~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d  132 (183)
                                  ....+..+++...++.+       -.+    .....|||||||+      +..+|..+   |+.+--|
T Consensus       562 SI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD  641 (709)
T COG2274         562 SIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALD  641 (709)
T ss_pred             cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccC
Confidence                        11234555555554422       222    2334599999994      36677764   7799999


Q ss_pred             cccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          133 EATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ++++..+...+......  +++++++|.+. +++.+||+|++|
T Consensus       642 ~~sE~~I~~~L~~~~~~--~T~I~IaHRl~-ti~~adrIiVl~  681 (709)
T COG2274         642 PETEAIILQNLLQILQG--RTVIIIAHRLS-TIRSADRIIVLD  681 (709)
T ss_pred             HhHHHHHHHHHHHHhcC--CeEEEEEccch-HhhhccEEEEcc
Confidence            99988888877765544  88999999986 578899999998

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.86  E-value=3.2e-23  Score=169.77  Aligned_cols=167  Identities=16%  Similarity=0.014  Sum_probs=125.5

Q ss_pred             cccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccc--
Q 036195            7 PHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSIC--   82 (183)
Q Consensus         7 ~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~--   82 (183)
                      .+++  ||++.+||.+||+|+||||||||-++|.+|++++ |+|.|.|+++.........|....+.+-+..-.+++.  
T Consensus       301 ~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPR  379 (534)
T COG4172         301 RAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPR  379 (534)
T ss_pred             EEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcc
Confidence            4455  5568999999999999999999999999999766 9999999987642111001111111111100011111  


Q ss_pred             -------------------ccccchHHHHHHHHcCCC-CccCCCCCCCChhhhhee------cCchhhc---ccccccCc
Q 036195           83 -------------------HEALAFPCLERIYVHGCP-SLRKLPFSLESGKRNGVL------IGEEEWW---NQLEWDDE  133 (183)
Q Consensus        83 -------------------~~~~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~i------~~~~~w~---~~l~~~d~  133 (183)
                                         .......+.++++.+|++ .-++++++++||||+|+|      .-+|+++   ||.+--|.
T Consensus       380 mtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~  459 (534)
T COG4172         380 MTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDR  459 (534)
T ss_pred             cCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhH
Confidence                               111233578889999996 468899999999999954      4567775   88999999


Q ss_pred             ccccccccceeecCcccccCCCCCCceeeeeecccceEEEE
Q 036195          134 ATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICI  174 (183)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (183)
                      ..+..+..++..++..+..+-+.+||||..|.+.|++||+.
T Consensus       460 SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm  500 (534)
T COG4172         460 SVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVM  500 (534)
T ss_pred             HHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEE
Confidence            99999999999999999999999999999999999999986

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=99.86  E-value=1.3e-22  Score=181.04  Aligned_cols=162  Identities=15%  Similarity=0.097  Sum_probs=118.5

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|+++  ++++||.++|+|+||||||||+++|+|+++|++|+|.++|.++.+..    ...+ +..+++++|...++.
T Consensus       470 ~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~----~~~~-r~~i~~v~q~~~lf~  544 (694)
T TIGR01846       470 PEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIAD----PAWL-RRQMGVVLQENVLFS  544 (694)
T ss_pred             ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCC----HHHH-HHhCeEEccCCeehh
Confidence            3578755  58999999999999999999999999999999999999999876421    0111 123555565543332


Q ss_pred             c------------ccchHHHHHHHHcCCC-----------CccCCCCCCCChhhhhe------ecCchhhc---cccccc
Q 036195           84 E------------ALAFPCLERIYVHGCP-----------SLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWD  131 (183)
Q Consensus        84 ~------------~~~~~~l~vLe~l~L~-----------~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~  131 (183)
                      .            ....+..++++..++.           .........|||||+|+      +..+|..+   |+.+..
T Consensus       545 ~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~L  624 (694)
T TIGR01846       545 RSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSAL  624 (694)
T ss_pred             hhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCC
Confidence            1            1123345555555543           22333456799999984      36677776   889999


Q ss_pred             CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      |+.++..+...+....  ..++++++||+++.+ +.+|+++.+|
T Consensus       625 D~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~-~~~d~ii~l~  665 (694)
T TIGR01846       625 DYESEALIMRNMREIC--RGRTVIIIAHRLSTV-RACDRIIVLE  665 (694)
T ss_pred             CHHHHHHHHHHHHHHh--CCCEEEEEeCChHHH-HhCCEEEEEe
Confidence            9999999988887663  357899999999765 5699999997

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=99.86  E-value=1.5e-22  Score=176.96  Aligned_cols=162  Identities=17%  Similarity=0.094  Sum_probs=117.4

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|+++  ++++||.+||+|||||||||++++|+|++.|++|+|.++|.++....    ... -+..+++++|...+|.
T Consensus       342 ~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~----~~~-lr~~I~~V~Qd~~LF~  416 (567)
T COG1132         342 KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDIS----LDS-LRKRIGIVSQDPLLFS  416 (567)
T ss_pred             CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcC----HHH-HHHhccEEcccceeec
Confidence            4788855  58999999999999999999999999999999999999998887531    111 1134556666554443


Q ss_pred             c------------ccchHHHHHHHHcCC-------CCccCCC----CCCCChhhhhee------cCchhhc---cccccc
Q 036195           84 E------------ALAFPCLERIYVHGC-------PSLRKLP----FSLESGKRNGVL------IGEEEWW---NQLEWD  131 (183)
Q Consensus        84 ~------------~~~~~~l~vLe~l~L-------~~L~~~~----~~~LSgGqk~~i------~~~~~w~---~~l~~~  131 (183)
                      .            ....+..++++..++       ++-.+..    ...|||||||+|      ..+|+.+   |+.+.-
T Consensus       417 ~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSal  496 (567)
T COG1132         417 GTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSAL  496 (567)
T ss_pred             ccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEecccccc
Confidence            1            122345555555433       2222333    346999999943      5666664   889999


Q ss_pred             CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      |.++...++.-+..+. + .+++++++|.+..+.. +|+++++|
T Consensus       497 D~~tE~~I~~~l~~l~-~-~rT~iiIaHRlsti~~-aD~IiVl~  537 (567)
T COG1132         497 DTETEALIQDALKKLL-K-GRTTLIIAHRLSTIKN-ADRIIVLD  537 (567)
T ss_pred             CHHhHHHHHHHHHHHh-c-CCEEEEEeccHhHHHh-CCEEEEEE
Confidence            9999999988887544 2 3688999999965555 99999997

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=99.86  E-value=1.2e-22  Score=178.29  Aligned_cols=162  Identities=15%  Similarity=0.058  Sum_probs=117.3

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|+++  ++++||.++|+|+||||||||+++|+|+++|++|+|.++|.++.+..    ... ....++++||...++.
T Consensus       348 ~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~----~~~-~r~~i~~v~Q~~~lf~  422 (588)
T PRK13657        348 RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVT----RAS-LRRNIAVVFQDAGLFN  422 (588)
T ss_pred             CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCC----HHH-HHhheEEEecCccccc
Confidence            4588866  48999999999999999999999999999999999999998776421    011 1134566666554443


Q ss_pred             c------------ccchHHHHHHHHcCCCC-----------ccCCCCCCCChhhhhee------cCchhhc---cccccc
Q 036195           84 E------------ALAFPCLERIYVHGCPS-----------LRKLPFSLESGKRNGVL------IGEEEWW---NQLEWD  131 (183)
Q Consensus        84 ~------------~~~~~~l~vLe~l~L~~-----------L~~~~~~~LSgGqk~~i------~~~~~w~---~~l~~~  131 (183)
                      .            ..+.+..++++.+++.+           ........|||||+|+|      ..+|..+   |+....
T Consensus       423 ~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~L  502 (588)
T PRK13657        423 RSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSAL  502 (588)
T ss_pred             ccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCC
Confidence            2            11233455556555432           12223346999999843      5666665   889999


Q ss_pred             CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      |+++...+...+.....  .+.++++||+.+. ++.+|++|.+|
T Consensus       503 D~~t~~~i~~~l~~~~~--~~tvIiitHr~~~-~~~~D~ii~l~  543 (588)
T PRK13657        503 DVETEAKVKAALDELMK--GRTTFIIAHRLST-VRNADRILVFD  543 (588)
T ss_pred             CHHHHHHHHHHHHHHhc--CCEEEEEEecHHH-HHhCCEEEEEE
Confidence            99999988887765532  5889999999975 57899999996

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=1.7e-22  Score=171.88  Aligned_cols=161  Identities=15%  Similarity=0.124  Sum_probs=121.8

Q ss_pred             cccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195            7 PHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE   84 (183)
Q Consensus         7 ~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~   84 (183)
                      +++.++  ++++|+.++|+|+||||||||+++|+|+.+|++|+|.++|.+.++..     +..-+..+.+++|...++..
T Consensus       335 ~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~-----~~~~~k~i~~v~Q~p~lf~g  409 (559)
T COG4988         335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLS-----PEAWRKQISWVSQNPYLFAG  409 (559)
T ss_pred             cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccC-----HHHHHhHeeeeCCCCccccc
Confidence            677755  59999999999999999999999999999999999999998876531     11112346666776666542


Q ss_pred             ------------ccchHHHHHHHHcCCCCccCC------CCCC----CChhhhhee------cCchhhc---ccccccCc
Q 036195           85 ------------ALAFPCLERIYVHGCPSLRKL------PFSL----ESGKRNGVL------IGEEEWW---NQLEWDDE  133 (183)
Q Consensus        85 ------------~~~~~~l~vLe~l~L~~L~~~------~~~~----LSgGqk~~i------~~~~~w~---~~l~~~d~  133 (183)
                                  ..+.+..++++..++.++.+.      .+.+    |||||+|++      ..+++.+   ||..--|.
T Consensus       410 TireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~  489 (559)
T COG4988         410 TIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDA  489 (559)
T ss_pred             cHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCH
Confidence                        223456777887777554443      2333    999999855      3444444   88899998


Q ss_pred             ccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          134 ATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ++...+...+..+.++  ..++|+||.++. ++.+|+|+.+|
T Consensus       490 etE~~i~~~l~~l~~~--ktvl~itHrl~~-~~~~D~I~vld  528 (559)
T COG4988         490 ETEQIILQALQELAKQ--KTVLVITHRLED-AADADRIVVLD  528 (559)
T ss_pred             hHHHHHHHHHHHHHhC--CeEEEEEcChHH-HhcCCEEEEec
Confidence            8888888887777766  889999999975 57899999999

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.86  E-value=1.3e-22  Score=150.90  Aligned_cols=166  Identities=13%  Similarity=0.043  Sum_probs=122.5

Q ss_pred             cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccc---------cccchhe--e-ehhhhccCCC-
Q 036195           11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKI---------SVCSFIL--I-RRAYFFKLPN-   77 (183)
Q Consensus        11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~---------~~~~~~~--l-~~~~lg~lp~-   77 (183)
                      ||++++|+.+||||.||||||||.|+|+|++.|++|+|.|+|+.+.-..         ..+.-|+  + .++.+|.... 
T Consensus        33 SFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~  112 (267)
T COG4167          33 SFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDF  112 (267)
T ss_pred             EEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhhhhHhcc
Confidence            7889999999999999999999999999999999999999998654210         0000000  0 0011111100 


Q ss_pred             ----CccccccccchHHHHHHHHcCC-CCccCCCCCCCChhhhheec------Cchhhc---ccccccCcccccccccce
Q 036195           78 ----LKSICHEALAFPCLERIYVHGC-PSLRKLPFSLESGKRNGVLI------GEEEWW---NQLEWDDEATKHVFSSKL  143 (183)
Q Consensus        78 ----l~~l~~~~~~~~~l~vLe~l~L-~~L~~~~~~~LSgGqk~~i~------~~~~w~---~~l~~~d~~~~~~~~~~~  143 (183)
                          ...+.......++.+.+..+|+ ++-++.++..||.||||+++      -+|+.+   |.+...|...+..+..++
T Consensus       113 PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~  192 (267)
T COG4167         113 PLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLM  192 (267)
T ss_pred             hhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHH
Confidence                0011111112345677888887 67889999999999999542      344443   779999999999999999


Q ss_pred             eecCcccccCCCCCCceeeeeecccceEEEEee
Q 036195          144 IITTPQTVISIPQPSYTYEATIRPRYELICIDV  176 (183)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (183)
                      -.++.+..++-.-+++++-++--++|+||+.|=
T Consensus       193 LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~E  225 (267)
T COG4167         193 LELQEKQGISYIYVTQHIGMIKHISDQVLVMHE  225 (267)
T ss_pred             HHHHHHhCceEEEEechhhHhhhhcccEEEEec
Confidence            999999999999999999999999999999874

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.86  E-value=1.4e-22  Score=191.62  Aligned_cols=169  Identities=11%  Similarity=0.020  Sum_probs=117.3

Q ss_pred             cccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEE-ecCccccc--------cc-------cchheee
Q 036195            7 PHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIY-AVSLQKKI--------SV-------CSFILIR   68 (183)
Q Consensus         7 ~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~-g~~~~~~~--------~~-------~~~~~l~   68 (183)
                      ++|+++  ++++||++||+||||||||||+++|+|+++|++|+|.++ |.++....        ++       +..+..+
T Consensus       399 ~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~e  478 (1466)
T PTZ00265        399 EIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKN  478 (1466)
T ss_pred             ceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHH
Confidence            688855  589999999999999999999999999999999999995 56553210        00       0111122


Q ss_pred             hhhhccCCCCc-------------------------------------------ccc------ccccchHHHHHHHHcCC
Q 036195           69 RAYFFKLPNLK-------------------------------------------SIC------HEALAFPCLERIYVHGC   99 (183)
Q Consensus        69 ~~~lg~lp~l~-------------------------------------------~l~------~~~~~~~~l~vLe~l~L   99 (183)
                      .+.++......                                           .+.      .......+.++++.+++
T Consensus       479 NI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l  558 (1466)
T PTZ00265        479 NIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLI  558 (1466)
T ss_pred             HHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCc
Confidence            22222100000                                           000      00112345556666665


Q ss_pred             CCc-----------cCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCcccccCCCCCCc
Q 036195          100 PSL-----------RKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSY  159 (183)
Q Consensus       100 ~~L-----------~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (183)
                      .+.           .......|||||||+      +..+|+.+   |+..-.|+.++..++..+..+..+..+++++++|
T Consensus       559 ~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsH  638 (1466)
T PTZ00265        559 HDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAH  638 (1466)
T ss_pred             HHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeC
Confidence            432           345677899999984      36777776   8999999999999999998876544789999999


Q ss_pred             eeeeeecccceEEEEee
Q 036195          160 TYEATIRPRYELICIDV  176 (183)
Q Consensus       160 ~~~~~~~~~~~~~~~~~  176 (183)
                      +++.+ +.||++++++=
T Consensus       639 rls~i-~~aD~Iivl~~  654 (1466)
T PTZ00265        639 RLSTI-RYANTIFVLSN  654 (1466)
T ss_pred             CHHHH-HhCCEEEEEeC
Confidence            99865 79999999974

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=99.85  E-value=4.6e-23  Score=152.31  Aligned_cols=157  Identities=17%  Similarity=0.044  Sum_probs=113.2

Q ss_pred             cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCC------------C
Q 036195           11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPN------------L   78 (183)
Q Consensus        11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~------------l   78 (183)
                      |.++..||++-+|||||||||||+-.++|+. |-+|+|.|.|.++......    .+. ..-.|+.+            .
T Consensus        19 S~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~----eLA-rhRAYLsQqq~p~f~mpV~~Y   92 (248)
T COG4138          19 SGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSAT----ELA-RHRAYLSQQQTPPFAMPVWHY   92 (248)
T ss_pred             ccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHh----HHH-HHHHHHhhccCCcchhhhhhh
Confidence            4468999999999999999999999999997 7899999999987642110    000 00011111            0


Q ss_pred             ccccccc--cchHHHHHHHHcCCCCccCCCCCCCChhhhh--ee-------------cCchhhc-ccccccCcccccccc
Q 036195           79 KSICHEA--LAFPCLERIYVHGCPSLRKLPFSLESGKRNG--VL-------------IGEEEWW-NQLEWDDEATKHVFS  140 (183)
Q Consensus        79 ~~l~~~~--~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~--~i-------------~~~~~w~-~~l~~~d~~~~~~~~  140 (183)
                      -.+++..  ......++-..+++.+...+.++.|||||-|  ++             .++--.| ||...-|.+.+..++
T Consensus        93 L~L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLd  172 (248)
T COG4138          93 LTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALD  172 (248)
T ss_pred             hhhcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHH
Confidence            0111111  1123455667788889899999999999876  32             2233335 667777888888888


Q ss_pred             cceeecCcccccCCCCCCceeeeeecccceEEEE
Q 036195          141 SKLIITTPQTVISIPQPSYTYEATIRPRYELICI  174 (183)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (183)
                      .++..+-.+ .++|.|.+||++-|++-+|+|+.+
T Consensus       173 rll~~~c~~-G~~vims~HDLNhTLrhA~~~wLL  205 (248)
T COG4138         173 RLLSALCQQ-GLAIVMSSHDLNHTLRHAHRAWLL  205 (248)
T ss_pred             HHHHHHHhC-CcEEEEeccchhhHHHHHHHHHHH
Confidence            888888777 999999999999999999998754

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=2.6e-22  Score=169.11  Aligned_cols=164  Identities=15%  Similarity=0.088  Sum_probs=117.6

Q ss_pred             cccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccc
Q 036195            5 YRPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSIC   82 (183)
Q Consensus         5 ~~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~   82 (183)
                      ..++|++|  ++++||.+||+|++|||||||+.+++|.++|++|+|.++|.++.....     ..-...+..++|...+|
T Consensus       350 ~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~-----~~~~e~i~vl~Qr~hlF  424 (573)
T COG4987         350 QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDE-----QALRETISVLTQRVHLF  424 (573)
T ss_pred             ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCCh-----hhHHHHHhhhccchHHH
Confidence            45788855  589999999999999999999999999999999999999987764210     00011233333333232


Q ss_pred             ------------ccccchHHHHHHHHcCCCCccCCC-----------CCCCChhhhhee-------cCchhhc--ccccc
Q 036195           83 ------------HEALAFPCLERIYVHGCPSLRKLP-----------FSLESGKRNGVL-------IGEEEWW--NQLEW  130 (183)
Q Consensus        83 ------------~~~~~~~~l~vLe~l~L~~L~~~~-----------~~~LSgGqk~~i-------~~~~~w~--~~l~~  130 (183)
                                  ++..+.+.-++++.+++.++....           -..|||||+|++       ...|-|+  ||.|.
T Consensus       425 ~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTeg  504 (573)
T COG4987         425 SGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEG  504 (573)
T ss_pred             HHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCccc
Confidence                        234456677888999887654333           356999999842       4445554  89999


Q ss_pred             cCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEee
Q 036195          131 DDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICIDV  176 (183)
Q Consensus       131 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (183)
                      -|+.+...+..++.....  ..+++|++|++..+ ..+||+|.+|=
T Consensus       505 LD~~TE~~vL~ll~~~~~--~kTll~vTHrL~~l-e~~drIivl~~  547 (573)
T COG4987         505 LDPITERQVLALLFEHAE--GKTLLMVTHRLRGL-ERMDRIIVLDN  547 (573)
T ss_pred             CChhhHHHHHHHHHHHhc--CCeEEEEecccccH-hhcCEEEEEEC
Confidence            999777766655443332  56899999999875 67899999983

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=99.85  E-value=4e-22  Score=172.98  Aligned_cols=148  Identities=15%  Similarity=0.093  Sum_probs=109.2

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|+++  ++++||.++|+||||||||||+++|+|+++|++|+|.++|.++.+.      ...-+..++++||...++.
T Consensus       348 ~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~------~~~lr~~i~~V~Q~~~lF~  421 (529)
T TIGR02868       348 PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL------QDELRRRISVFAQDAHLFD  421 (529)
T ss_pred             CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH------HHHHHhheEEEccCccccc
Confidence            3588855  5899999999999999999999999999999999999999887641      1111234677777665553


Q ss_pred             c------------ccchHHHHHHHHcCCCCcc-------CC----CCCCCChhhhhee------cCchhhc---cccccc
Q 036195           84 E------------ALAFPCLERIYVHGCPSLR-------KL----PFSLESGKRNGVL------IGEEEWW---NQLEWD  131 (183)
Q Consensus        84 ~------------~~~~~~l~vLe~l~L~~L~-------~~----~~~~LSgGqk~~i------~~~~~w~---~~l~~~  131 (183)
                      .            ..+.+..++++.+++.+..       +.    ....|||||||+|      ..+|+.+   |+.+--
T Consensus       422 ~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaL  501 (529)
T TIGR02868       422 TTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHL  501 (529)
T ss_pred             ccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence            2            2234566777777764322       22    2345999999843      6677765   889999


Q ss_pred             CcccccccccceeecCcccccCCCCCCcee
Q 036195          132 DEATKHVFSSKLIITTPQTVISIPQPSYTY  161 (183)
Q Consensus       132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (183)
                      |+++...++..+....  ..+++++++|++
T Consensus       502 D~~te~~I~~~l~~~~--~~~TvIiItHrl  529 (529)
T TIGR02868       502 DAGTESELLEDLLAAL--SGKTVVVITHHL  529 (529)
T ss_pred             CHHHHHHHHHHHHHhc--CCCEEEEEecCC
Confidence            9999988888877543  357899999974

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=8.3e-22  Score=166.29  Aligned_cols=162  Identities=14%  Similarity=0.079  Sum_probs=120.5

Q ss_pred             cccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccc
Q 036195            5 YRPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSIC   82 (183)
Q Consensus         5 ~~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~   82 (183)
                      +++||+  ||+|++||.+||+|+|||||||++|+|.+++. ++|+|.++|++++.-.     ...-+..++++||...+|
T Consensus       364 k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~-----~~SlR~~Ig~VPQd~~LF  437 (591)
T KOG0057|consen  364 KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVS-----LESLRQSIGVVPQDSVLF  437 (591)
T ss_pred             CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhC-----hHHhhhheeEeCCccccc
Confidence            567998  55799999999999999999999999999999 9999999999987521     111224688899987776


Q ss_pred             ccc------------cchHHHHHHHHcCCCC-----------ccCCCCCCCChhhhhee-------cCchhhc--ccccc
Q 036195           83 HEA------------LAFPCLERIYVHGCPS-----------LRKLPFSLESGKRNGVL-------IGEEEWW--NQLEW  130 (183)
Q Consensus        83 ~~~------------~~~~~l~vLe~l~L~~-----------L~~~~~~~LSgGqk~~i-------~~~~~w~--~~l~~  130 (183)
                      .+.            ...++.++.+..++.+           +.......|||||||++       ...|-..  |+.+-
T Consensus       438 ndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~  517 (591)
T KOG0057|consen  438 NDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSA  517 (591)
T ss_pred             chhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccc
Confidence            542            2345666666666633           23344557999999944       3333333  66777


Q ss_pred             cCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          131 DDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       131 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      .|-++...+-..+..  .-..++++|+-||+..+ ..+|+++.+|
T Consensus       518 LD~~TE~~i~~~i~~--~~~~rTvI~IvH~l~ll-~~~DkI~~l~  559 (591)
T KOG0057|consen  518 LDSETEREILDMIMD--VMSGRTVIMIVHRLDLL-KDFDKIIVLD  559 (591)
T ss_pred             cchhhHHHHHHHHHH--hcCCCeEEEEEecchhH-hcCCEEEEEE
Confidence            787777777777766  34478899999998765 5689999998

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.83  E-value=1.7e-21  Score=184.40  Aligned_cols=165  Identities=14%  Similarity=0.097  Sum_probs=122.4

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCC----------------------------------------
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSD----------------------------------------   43 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p----------------------------------------   43 (183)
                      ++||+++  ++++|+++||+||||||||||+++|.|++.|                                        
T Consensus      1181 ~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1260 (1466)
T PTZ00265       1181 VPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSL 1260 (1466)
T ss_pred             CccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccccccccccccccccc
Confidence            3689855  5899999999999999999999999999998                                        


Q ss_pred             --------------CCcEEEEEecCccccccccchheeehhhhccCCCCcccccc------------ccchHHHHHHHHc
Q 036195           44 --------------MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE------------ALAFPCLERIYVH   97 (183)
Q Consensus        44 --------------~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~------------~~~~~~l~vLe~l   97 (183)
                                    ++|+|.++|.++.+..    ...+ +..+++++|...+|..            ....++.++++..
T Consensus      1261 ~~~~~~~~~~~~~~~~G~I~idG~di~~~~----~~~l-R~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A 1335 (1466)
T PTZ00265       1261 TKEGGSGEDSTVFKNSGKILLDGVDICDYN----LKDL-RNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFA 1335 (1466)
T ss_pred             ccccccccccccCCCCCeEEECCEEHHhCC----HHHH-HhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHc
Confidence                          6999999999886531    1111 2356777776655532            2233456666666


Q ss_pred             CCCC-------ccC----CCCCCCChhhhhee------cCchhhc---ccccccCcccccccccceeecCcccccCCCCC
Q 036195           98 GCPS-------LRK----LPFSLESGKRNGVL------IGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQP  157 (183)
Q Consensus        98 ~L~~-------L~~----~~~~~LSgGqk~~i------~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  157 (183)
                      ++.+       -.+    .....|||||||+|      ..+|..+   |+.+-.|.++...++..+........++++++
T Consensus      1336 ~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiI 1415 (1466)
T PTZ00265       1336 AIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITI 1415 (1466)
T ss_pred             CCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEE
Confidence            5532       222    23456999999943      6677776   88999999988888888776642236899999


Q ss_pred             CceeeeeecccceEEEEee
Q 036195          158 SYTYEATIRPRYELICIDV  176 (183)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~  176 (183)
                      +|.+ .+++.+|+++++|=
T Consensus      1416 aHRl-sti~~aD~Ivvl~~ 1433 (1466)
T PTZ00265       1416 AHRI-ASIKRSDKIVVFNN 1433 (1466)
T ss_pred             echH-HHHHhCCEEEEEeC
Confidence            9999 55788999999973

>PLN03232 ABC transporter C family member; Provisional

Probab=99.83  E-value=1.3e-21  Score=186.05  Aligned_cols=162  Identities=12%  Similarity=0.053  Sum_probs=120.5

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      .++|+++  +|++||.+||+|++|||||||+++|.|+++|++|+|.++|.++.+..    ...+ +..++++||...+|.
T Consensus      1249 ~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~----~~~l-R~~i~iVpQdp~LF~ 1323 (1495)
T PLN03232       1249 PPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFG----LTDL-RRVLSIIPQSPVLFS 1323 (1495)
T ss_pred             CcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCC----HHHH-HhhcEEECCCCeeeC
Confidence            3689865  58999999999999999999999999999999999999999876421    1111 134666777655553


Q ss_pred             c-----------ccchHHHHHHHHcCCCCcc-----------CCCCCCCChhhhhe------ecCchhhc---ccccccC
Q 036195           84 E-----------ALAFPCLERIYVHGCPSLR-----------KLPFSLESGKRNGV------LIGEEEWW---NQLEWDD  132 (183)
Q Consensus        84 ~-----------~~~~~~l~vLe~l~L~~L~-----------~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d  132 (183)
                      .           ..+.+..++++.+++.+..           ......|||||||+      +..+|+.+   |+..-.|
T Consensus      1324 gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD 1403 (1495)
T PLN03232       1324 GTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVD 1403 (1495)
T ss_pred             ccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCC
Confidence            2           1233566677777664321           22235699999984      35566665   7788899


Q ss_pred             cccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          133 EATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      .++...++..+.... + .+++++++|.++.++. +|+|+++|
T Consensus      1404 ~~Te~~Iq~~L~~~~-~-~~TvI~IAHRl~ti~~-~DrIlVL~ 1443 (1495)
T PLN03232       1404 VRTDSLIQRTIREEF-K-SCTMLVIAHRLNTIID-CDKILVLS 1443 (1495)
T ss_pred             HHHHHHHHHHHHHHc-C-CCEEEEEeCCHHHHHh-CCEEEEEE
Confidence            988888888776543 2 5899999999977665 99999997

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.83  E-value=9.1e-22  Score=185.81  Aligned_cols=160  Identities=13%  Similarity=0.038  Sum_probs=122.5

Q ss_pred             ccccccce--ecCccEEEEEcCCCCcHHHHHHHHhcCCC---CCCcEEEEEecCccccccccchheeehhhhccCCCCcc
Q 036195            6 RPHLRYIE--DDGVKIIGLYGVRGVGKSTLIKQLNDMFS---DMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKS   80 (183)
Q Consensus         6 ~~~l~~l~--i~~Ge~~~liGpNGaGKSTLl~~i~gl~~---p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~   80 (183)
                      +++|++++  +++||++||+|||||||||||++|+|+.+   |++|+|.++|+++...     +    ...+++++|...
T Consensus       776 ~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~-----~----~~~i~yv~Q~~~  846 (1394)
T TIGR00956       776 RVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSS-----F----QRSIGYVQQQDL  846 (1394)
T ss_pred             cEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChh-----h----hcceeeeccccc
Confidence            46888665  89999999999999999999999999997   7899999999876321     0    011222222110


Q ss_pred             c----------------------cccccchHHHHHHHHcCCCCccCCCCC----CCChhhhhe------ecCchh-hc--
Q 036195           81 I----------------------CHEALAFPCLERIYVHGCPSLRKLPFS----LESGKRNGV------LIGEEE-WW--  125 (183)
Q Consensus        81 l----------------------~~~~~~~~~l~vLe~l~L~~L~~~~~~----~LSgGqk~~------i~~~~~-w~--  125 (183)
                      .                      ........+.++++.+++.+.++..+.    .|||||||+      +..+|+ .+  
T Consensus       847 ~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlL  926 (1394)
T TIGR00956       847 HLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFL  926 (1394)
T ss_pred             CCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEE
Confidence            0                      000011235678999999988888887    799999983      477886 44  


Q ss_pred             -ccccccCcccccccccceeecCcccccCCCCCCceeeee-ecccceEEEEe
Q 036195          126 -NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEAT-IRPRYELICID  175 (183)
Q Consensus       126 -~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  175 (183)
                       ||....|..+...+...+..+..+ .++|++++|+++.. .+.+|+++.++
T Consensus       927 DEPTsgLD~~~~~~i~~~L~~la~~-g~tvI~t~H~~~~~~~~~~D~vl~L~  977 (1394)
T TIGR00956       927 DEPTSGLDSQTAWSICKLMRKLADH-GQAILCTIHQPSAILFEEFDRLLLLQ  977 (1394)
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHhcCEEEEEc
Confidence             899999999999999999888654 78999999999975 47899999986

>PLN03130 ABC transporter C family member; Provisional

Probab=99.83  E-value=1.6e-21  Score=185.97  Aligned_cols=161  Identities=13%  Similarity=0.098  Sum_probs=120.4

Q ss_pred             cccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195            7 PHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE   84 (183)
Q Consensus         7 ~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~   84 (183)
                      +||+++  +|++||.+||+|++|||||||+++|.|++.|++|+|.++|.++.+.    ....++ ..++++||...+|..
T Consensus      1253 ~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i----~l~~LR-~~IsiVpQdp~LF~G 1327 (1622)
T PLN03130       1253 PVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKF----GLMDLR-KVLGIIPQAPVLFSG 1327 (1622)
T ss_pred             ceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccC----CHHHHH-hccEEECCCCccccc
Confidence            689855  5899999999999999999999999999999999999999988652    111121 346667776655432


Q ss_pred             -----------ccchHHHHHHHHcCCCCc-------cC----CCCCCCChhhhhe------ecCchhhc---ccccccCc
Q 036195           85 -----------ALAFPCLERIYVHGCPSL-------RK----LPFSLESGKRNGV------LIGEEEWW---NQLEWDDE  133 (183)
Q Consensus        85 -----------~~~~~~l~vLe~l~L~~L-------~~----~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~  133 (183)
                                 ..+.+..++++.+++.+.       .+    .....|||||||+      +..+|..+   |+..-.|.
T Consensus      1328 TIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~ 1407 (1622)
T PLN03130       1328 TVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDV 1407 (1622)
T ss_pred             cHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCH
Confidence                       123345667777666322       12    2234699999984      35566665   77888999


Q ss_pred             ccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          134 ATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ++...++..+.... + .+++++++|.++.++. ||+|+++|
T Consensus      1408 ~Te~~Iq~~I~~~~-~-~~TvI~IAHRL~tI~~-~DrIlVLd 1446 (1622)
T PLN03130       1408 RTDALIQKTIREEF-K-SCTMLIIAHRLNTIID-CDRILVLD 1446 (1622)
T ss_pred             HHHHHHHHHHHHHC-C-CCEEEEEeCChHHHHh-CCEEEEEE
Confidence            99888888877553 2 5899999999998765 89999998

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.83  E-value=1.7e-21  Score=183.98  Aligned_cols=171  Identities=15%  Similarity=0.054  Sum_probs=121.7

Q ss_pred             cccccccce--ecCccEEEEEcCCCCcHHHHHHHHhcCC----CCCCcEEEEEecCccccc-------cc--------cc
Q 036195            5 YRPHLRYIE--DDGVKIIGLYGVRGVGKSTLIKQLNDMF----SDMSHKFAIYAVSLQKKI-------SV--------CS   63 (183)
Q Consensus         5 ~~~~l~~l~--i~~Ge~~~liGpNGaGKSTLl~~i~gl~----~p~~G~I~~~g~~~~~~~-------~~--------~~   63 (183)
                      .+++|++++  +++||+++|+||||||||||||+|+|+.    +|++|+|.++|.++.+..       .+        ..
T Consensus        73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~  152 (1394)
T TIGR00956        73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPH  152 (1394)
T ss_pred             cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCC
Confidence            356888665  8999999999999999999999999996    579999999998764210       00        00


Q ss_pred             hheeehhhhcc---CCCCc--cccccccchH-HHHHHHHcCCCCccCCC-----CCCCChhhhhe------ecCchhhc-
Q 036195           64 FILIRRAYFFK---LPNLK--SICHEALAFP-CLERIYVHGCPSLRKLP-----FSLESGKRNGV------LIGEEEWW-  125 (183)
Q Consensus        64 ~~~l~~~~lg~---lp~l~--~l~~~~~~~~-~l~vLe~l~L~~L~~~~-----~~~LSgGqk~~------i~~~~~w~-  125 (183)
                      .++.+.+.+..   .|...  .......... ...+++.+++.+.++.+     +..|||||||+      +..+|+.+ 
T Consensus       153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vll  232 (1394)
T TIGR00956       153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQC  232 (1394)
T ss_pred             CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEE
Confidence            11111111110   01000  0000000011 24578889998877655     46799999984      36777775 


Q ss_pred             --ccccccCcccccccccceeecCcccccCCCCCCcee-eeeecccceEEEEe
Q 036195          126 --NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTY-EATIRPRYELICID  175 (183)
Q Consensus       126 --~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  175 (183)
                        ||....|..+...+...+..+..+...++++++|+. ..+.+.+|+|+.|+
T Consensus       233 lDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~  285 (1394)
T TIGR00956       233 WDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLY  285 (1394)
T ss_pred             EeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEe
Confidence              889999999999999999988776688999999996 67889999999996

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=99.83  E-value=1.4e-21  Score=172.35  Aligned_cols=162  Identities=13%  Similarity=0.018  Sum_probs=124.0

Q ss_pred             cccccccce--ecCccEEEEEcCCCCcHHHHHHHHhcCCCCC---CcEEEEEecCccccccccchheeehhhhccCCCCc
Q 036195            5 YRPHLRYIE--DDGVKIIGLYGVRGVGKSTLIKQLNDMFSDM---SHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK   79 (183)
Q Consensus         5 ~~~~l~~l~--i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~---~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~   79 (183)
                      .+++|++++  +++||+++|+|||||||||||++|+|..+|.   +|+|.++|.++....        ....+++++|..
T Consensus        37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~--------~~~~i~yv~Q~~  108 (617)
T TIGR00955        37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKE--------MRAISAYVQQDD  108 (617)
T ss_pred             ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHH--------Hhhhceeecccc
Confidence            467898665  9999999999999999999999999999885   899999998754210        001122322221


Q ss_pred             cccc----------------------cccchHHHHHHHHcCCCCccCCCCC------CCChhhhhe------ecCchhhc
Q 036195           80 SICH----------------------EALAFPCLERIYVHGCPSLRKLPFS------LESGKRNGV------LIGEEEWW  125 (183)
Q Consensus        80 ~l~~----------------------~~~~~~~l~vLe~l~L~~L~~~~~~------~LSgGqk~~------i~~~~~w~  125 (183)
                      .++.                      ......+.++++.+++.+.++.++.      .|||||||+      +..+|+.+
T Consensus       109 ~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vl  188 (617)
T TIGR00955       109 LFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLL  188 (617)
T ss_pred             ccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEE
Confidence            1111                      1112246788999999888888876      499999984      36777775


Q ss_pred             ---ccccccCcccccccccceeecCcccccCCCCCCceee-eeecccceEEEEe
Q 036195          126 ---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYE-ATIRPRYELICID  175 (183)
Q Consensus       126 ---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  175 (183)
                         ||....|..+...+...+..+..+ .+++++++|+.. .+...+|+++.++
T Consensus       189 llDEPtsgLD~~~~~~l~~~L~~l~~~-g~tvi~~~hq~~~~i~~~~D~i~ll~  241 (617)
T TIGR00955       189 FCDEPTSGLDSFMAYSVVQVLKGLAQK-GKTIICTIHQPSSELFELFDKIILMA  241 (617)
T ss_pred             EeeCCCcchhHHHHHHHHHHHHHHHhC-CCEEEEEeCCCCHHHHHHhceEEEee
Confidence               889999999999999998887654 889999999996 6789999999986

>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]

Probab=99.83  E-value=1.1e-21  Score=178.67  Aligned_cols=162  Identities=16%  Similarity=0.085  Sum_probs=130.1

Q ss_pred             cccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccccc
Q 036195            8 HLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHEA   85 (183)
Q Consensus         8 ~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~~   85 (183)
                      ++++  +.|++|||+|++|||||||||++++|+|..+|++|++++.|.++.....    .......+||-||.-.+.+..
T Consensus       580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~----~~~~~~~iGyCPQ~d~l~~~l  655 (885)
T KOG0059|consen  580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTD----FQQVRKQLGYCPQFDALWEEL  655 (885)
T ss_pred             hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccc----hhhhhhhcccCCchhhhhhhc
Confidence            5664  4599999999999999999999999999999999999999988764311    001223466666654333321


Q ss_pred             c-------------------chHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccccc
Q 036195           86 L-------------------AFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKH  137 (183)
Q Consensus        86 ~-------------------~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~  137 (183)
                      .                   ...+...++.+++.+.++.++..+|||+||+      +.+.|..+   ||..+.||.+|.
T Consensus       656 T~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr  735 (885)
T KOG0059|consen  656 TGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARR  735 (885)
T ss_pred             cHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHH
Confidence            1                   1235677888999999999999999999983      48888886   889999999999


Q ss_pred             ccccceeecCcccccCCCCCCceeeeeecccceEEEE
Q 036195          138 VFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICI  174 (183)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (183)
                      .+-..+...+.+.- +++.|||.+++.-+.|+|+-..
T Consensus       736 ~lW~ii~~~~k~g~-aiiLTSHsMeE~EaLCtR~aIm  771 (885)
T KOG0059|consen  736 HLWDIIARLRKNGK-AIILTSHSMEEAEALCTRTAIM  771 (885)
T ss_pred             HHHHHHHHHHhcCC-EEEEEcCCHHHHHHHhhhhhee
Confidence            99999999988744 9999999999999999987543

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.83  E-value=2.4e-21  Score=166.82  Aligned_cols=166  Identities=20%  Similarity=0.094  Sum_probs=110.8

Q ss_pred             cccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEec-Cc----cccccccchheeehhhhcc---
Q 036195            5 YRPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAV-SL----QKKISVCSFILIRRAYFFK---   74 (183)
Q Consensus         5 ~~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~-~~----~~~~~~~~~~~l~~~~lg~---   74 (183)
                      .+++|+  +|++.+|+++||||+||||||||||+|+|...|++|+|...+. .+    +........++...+..+.   
T Consensus        15 ~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~   94 (530)
T COG0488          15 DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGEL   94 (530)
T ss_pred             CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCccHHHHHHhhhHHH
Confidence            466776  5569999999999999999999999999999999999988652 11    1100000000111000000   


Q ss_pred             -------------CCC--------Ccc----ccccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchh
Q 036195           75 -------------LPN--------LKS----ICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEE  123 (183)
Q Consensus        75 -------------lp~--------l~~----l~~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~  123 (183)
                                   ++.        +..    +..+....++..++.-++++.. ++++.+||||||++      +.++|+
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~LSGG~r~Rv~LA~aL~~~pD  173 (530)
T COG0488          95 RELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSSLSGGWRRRVALARALLEEPD  173 (530)
T ss_pred             HHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhhcCHHHHHHHHHHHHHhcCCC
Confidence                         000        000    0001112345667777888877 99999999999973      488888


Q ss_pred             hc---ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          124 WW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       124 w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      .+   ||.---|.++..-++.++.   .... +++++|||-++--..|.+++=||
T Consensus       174 lLLLDEPTNHLD~~~i~WLe~~L~---~~~g-tviiVSHDR~FLd~V~t~I~~ld  224 (530)
T COG0488         174 LLLLDEPTNHLDLESIEWLEDYLK---RYPG-TVIVVSHDRYFLDNVATHILELD  224 (530)
T ss_pred             EEEEcCCCcccCHHHHHHHHHHHH---hCCC-cEEEEeCCHHHHHHHhhheEEec
Confidence            86   6666666666666666665   2223 89999999999999999988766

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.83  E-value=1.4e-21  Score=160.19  Aligned_cols=163  Identities=13%  Similarity=0.035  Sum_probs=127.6

Q ss_pred             cccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCC-----CCcEEEEEecCccccccccchheeehhhhccCCC
Q 036195            5 YRPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSD-----MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPN   77 (183)
Q Consensus         5 ~~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p-----~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~   77 (183)
                      ...+++  ||++.+||.+||+|+||||||-..+.|++|++.     -+|+|.|+|.++-..      +..+...+ +-.+
T Consensus        22 ~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~------se~~lr~i-RG~~   94 (534)
T COG4172          22 TVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAA------SERQLRGV-RGNK   94 (534)
T ss_pred             ceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcC------CHHHHhhh-cccc
Confidence            345666  667999999999999999999999999999854     378999999876431      00000000 1112


Q ss_pred             Ccccccccc----------------------------chHHHHHHHHcCCCC---ccCCCCCCCChhhhhe------ecC
Q 036195           78 LKSICHEAL----------------------------AFPCLERIYVHGCPS---LRKLPFSLESGKRNGV------LIG  120 (183)
Q Consensus        78 l~~l~~~~~----------------------------~~~~l~vLe~l~L~~---L~~~~~~~LSgGqk~~------i~~  120 (183)
                      +.++||+++                            ..+.+++++.+++++   ..+.++++|||||+|+      +++
T Consensus        95 I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan  174 (534)
T COG4172          95 IGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALAN  174 (534)
T ss_pred             eEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcC
Confidence            233343322                            234678899999964   5677899999999994      488


Q ss_pred             chhhc---ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEE
Q 036195          121 EEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICI  174 (183)
Q Consensus       121 ~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (183)
                      +|+.+   ||..--|...+..+..++..++.+...+++.++|||..|-+++|||++.
T Consensus       175 ~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM  231 (534)
T COG4172         175 EPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVM  231 (534)
T ss_pred             CCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEE
Confidence            99997   8899999999999999999999999999999999999999999999976

>PLN03140 ABC transporter G family member; Provisional

Probab=99.82  E-value=4.2e-21  Score=181.39  Aligned_cols=171  Identities=12%  Similarity=0.028  Sum_probs=121.8

Q ss_pred             cccccccce--ecCccEEEEEcCCCCcHHHHHHHHhcCCCCC---CcEEEEEecCcccc-----ccc--------cchhe
Q 036195            5 YRPHLRYIE--DDGVKIIGLYGVRGVGKSTLIKQLNDMFSDM---SHKFAIYAVSLQKK-----ISV--------CSFIL   66 (183)
Q Consensus         5 ~~~~l~~l~--i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~---~G~I~~~g~~~~~~-----~~~--------~~~~~   66 (183)
                      .+++|++++  +++||+++|+||||||||||||+|+|.++|+   +|+|.++|.++.+.     ..+        ...++
T Consensus       177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV  256 (1470)
T PLN03140        177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTV  256 (1470)
T ss_pred             cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcH
Confidence            456888665  8999999999999999999999999999998   99999999865321     000        01122


Q ss_pred             eehhhhcc-CCCCc-------cccccc--------cc----------------hHHHHHHHHcCCCCcc-----CCCCCC
Q 036195           67 IRRAYFFK-LPNLK-------SICHEA--------LA----------------FPCLERIYVHGCPSLR-----KLPFSL  109 (183)
Q Consensus        67 l~~~~lg~-lp~l~-------~l~~~~--------~~----------------~~~l~vLe~l~L~~L~-----~~~~~~  109 (183)
                      .+.+.+.. .....       ......        ..                .....+++.+++.+.+     +..+..
T Consensus       257 ~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rg  336 (1470)
T PLN03140        257 KETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRG  336 (1470)
T ss_pred             HHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccC
Confidence            22222110 00000       000000        00                0124578889997654     556789


Q ss_pred             CChhhhhee------cCchhhc---ccccccCcccccccccceeecCcccccCCCCCCcee-eeeecccceEEEEe
Q 036195          110 ESGKRNGVL------IGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTY-EATIRPRYELICID  175 (183)
Q Consensus       110 LSgGqk~~i------~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  175 (183)
                      +||||||++      .++|+.+   |+....|..+...+...+..+..+...++++++|+. .++...+|+|+.|+
T Consensus       337 lSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~  412 (1470)
T PLN03140        337 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLS  412 (1470)
T ss_pred             CCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEee
Confidence            999999843      6777775   889999999999999999888766678999999986 58889999999996

>PLN03073 ABC transporter F family; Provisional

Probab=99.82  E-value=2.7e-21  Score=172.42  Aligned_cols=166  Identities=10%  Similarity=-0.034  Sum_probs=115.2

Q ss_pred             ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCC---CCCCcEEEEEecCccccc-cc--------cchheeehhh
Q 036195            6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMF---SDMSHKFAIYAVSLQKKI-SV--------CSFILIRRAY   71 (183)
Q Consensus         6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~---~p~~G~I~~~g~~~~~~~-~~--------~~~~~l~~~~   71 (183)
                      +++|+  ||+|.+|+++||+||||||||||||+|+|..   .|++|+|.+.++.+.... ..        ..........
T Consensus       190 ~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~~~~~~~~~  269 (718)
T PLN03073        190 RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEEE  269 (718)
T ss_pred             CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHHHhhHHHHHHHHHH
Confidence            45777  5569999999999999999999999999864   689999987665432110 00        0000000000


Q ss_pred             hccCCC-----------------Ccccccc-------------------ccchHHHHHHHHcCCC-CccCCCCCCCChhh
Q 036195           72 FFKLPN-----------------LKSICHE-------------------ALAFPCLERIYVHGCP-SLRKLPFSLESGKR  114 (183)
Q Consensus        72 lg~lp~-----------------l~~l~~~-------------------~~~~~~l~vLe~l~L~-~L~~~~~~~LSgGq  114 (183)
                      +++.++                 .......                   ....++.++++.+++. ...++++.+|||||
T Consensus       270 ~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~~~~~~~~LSgG~  349 (718)
T PLN03073        270 AQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKATKTFSGGW  349 (718)
T ss_pred             HHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHHHhCchhhCCHHH
Confidence            111111                 0000000                   0112345567777875 56788999999999


Q ss_pred             hhe------ecCchhhc---ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          115 NGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       115 k~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +++      +..+|+.+   ||....|+..+..+..++...    ..+++++|||++.+...||+++.|+
T Consensus       350 k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~----~~tviivsHd~~~l~~~~d~i~~l~  415 (718)
T PLN03073        350 RMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW----PKTFIVVSHAREFLNTVVTDILHLH  415 (718)
T ss_pred             HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc----CCEEEEEECCHHHHHHhCCEEEEEE
Confidence            983      47788887   899999999999998888764    4689999999999999999999997

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.82  E-value=2.3e-21  Score=140.18  Aligned_cols=155  Identities=14%  Similarity=0.042  Sum_probs=113.2

Q ss_pred             cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCC---CcEEEEEecCccccccccchheeehhhhccCCCCccccc----
Q 036195           11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDM---SHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH----   83 (183)
Q Consensus        11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~---~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~----   83 (183)
                      +++|.+||++.|+||+|||||||+..+.|.+.++   +|+++++++++....     ...  ..+|.+.|...+|.    
T Consensus        22 n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lP-----a~q--Rq~GiLFQD~lLFphlsV   94 (213)
T COG4136          22 NFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLP-----AAQ--RQIGILFQDALLFPHLSV   94 (213)
T ss_pred             eEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccc-----hhh--hheeeeeccccccccccc
Confidence            6789999999999999999999999999999774   899999998765320     000  12222222221211    


Q ss_pred             --------------cccchHHHHHHHHcCCCCccCCCCCCCChhhhh------eecCchhhc---ccccccCcccccccc
Q 036195           84 --------------EALAFPCLERIYVHGCPSLRKLPFSLESGKRNG------VLIGEEEWW---NQLEWDDEATKHVFS  140 (183)
Q Consensus        84 --------------~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~------~i~~~~~w~---~~l~~~d~~~~~~~~  140 (183)
                                    +........+++..++..+.++.+.++|||||-      .+..+|+..   ||++..|.+.++.|.
T Consensus        95 g~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR  174 (213)
T COG4136          95 GQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFR  174 (213)
T ss_pred             ccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHH
Confidence                          111223567899999999999999999999985      347788775   889999999999888


Q ss_pred             cceeecCcccccCCCCCCceeeeeecccceEEE
Q 036195          141 SKLIITTPQTVISIPQPSYTYEATIRPRYELIC  173 (183)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (183)
                      ...-.-.-...+-++|++||+.-|-+ --|||=
T Consensus       175 ~wVFs~~r~agiPtv~VTHD~~Dvpa-gsrVie  206 (213)
T COG4136         175 QWVFSEVRAAGIPTVQVTHDLQDVPA-GSRVIE  206 (213)
T ss_pred             HHHHHHHHhcCCCeEEEecccccCCC-CCeeee
Confidence            76444444557888899999988763 335553

>PTZ00243 ABC transporter; Provisional

Probab=99.81  E-value=8.9e-21  Score=180.57  Aligned_cols=161  Identities=14%  Similarity=0.111  Sum_probs=119.6

Q ss_pred             cccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195            7 PHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE   84 (183)
Q Consensus         7 ~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~   84 (183)
                      ++|+++  +|++||.+||+|++|||||||+++|.|+++|++|+|.++|.++.+.    ....++ ..++++||...+|..
T Consensus      1324 ~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i----~l~~LR-~~I~iVpQdp~LF~g 1398 (1560)
T PTZ00243       1324 LVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAY----GLRELR-RQFSMIPQDPVLFDG 1398 (1560)
T ss_pred             ceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccC----CHHHHH-hcceEECCCCccccc
Confidence            488865  5899999999999999999999999999999999999999988653    111222 356777776655542


Q ss_pred             -----------ccchHHHHHHHHcCCCCcc-------CCC----CCCCChhhhhe------ecCc-hhhc---ccccccC
Q 036195           85 -----------ALAFPCLERIYVHGCPSLR-------KLP----FSLESGKRNGV------LIGE-EEWW---NQLEWDD  132 (183)
Q Consensus        85 -----------~~~~~~l~vLe~l~L~~L~-------~~~----~~~LSgGqk~~------i~~~-~~w~---~~l~~~d  132 (183)
                                 ..+.++.++++.+++.+..       +..    ...|||||||+      +..+ +..+   |+..-.|
T Consensus      1399 TIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD 1478 (1560)
T PTZ00243       1399 TVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANID 1478 (1560)
T ss_pred             cHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCC
Confidence                       2234567778887775421       222    35699999983      2443 4554   7788889


Q ss_pred             cccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          133 EATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      .++...++..+.....  .+++++++|.++.+ +.||+|+++|
T Consensus      1479 ~~te~~Iq~~L~~~~~--~~TvI~IAHRl~ti-~~~DrIlVLd 1518 (1560)
T PTZ00243       1479 PALDRQIQATVMSAFS--AYTVITIAHRLHTV-AQYDKIIVMD 1518 (1560)
T ss_pred             HHHHHHHHHHHHHHCC--CCEEEEEeccHHHH-HhCCEEEEEE
Confidence            9888888877764322  48899999999755 6699999997

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.81  E-value=4.6e-21  Score=138.14  Aligned_cols=103  Identities=22%  Similarity=0.146  Sum_probs=75.6

Q ss_pred             cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccccc-----
Q 036195           11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHEA-----   85 (183)
Q Consensus        11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~~-----   85 (183)
                      ++++.+||+++|+|+||||||||+++|+|+.+|++|+|.++|.++....     .......++++++...++...     
T Consensus         5 ~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~~~~tv~~~   79 (137)
T PF00005_consen    5 SLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDID-----IEELRRRIGYVPQDPQLFPGLTVREN   79 (137)
T ss_dssp             EEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSH-----HHHHHHTEEEEESSHCHHTTSBHHHH
T ss_pred             EEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccc-----cccccccccccccccccccccccccc
Confidence            4679999999999999999999999999999999999999998776410     111123345555543333322     


Q ss_pred             -cchHHHHHHHHcCCCCccCCCC----CCCChhhhhee
Q 036195           86 -LAFPCLERIYVHGCPSLRKLPF----SLESGKRNGVL  118 (183)
Q Consensus        86 -~~~~~l~vLe~l~L~~L~~~~~----~~LSgGqk~~i  118 (183)
                       ......++++.+++..+.+.++    .+||+||+|++
T Consensus        80 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl  117 (137)
T PF00005_consen   80 ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRL  117 (137)
T ss_dssp             HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHH
T ss_pred             cccccccccccccccccccccccccccchhhHHHHHHH
Confidence             1224667888888777666666    99999999843

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.81  E-value=1.1e-20  Score=144.77  Aligned_cols=163  Identities=11%  Similarity=-0.049  Sum_probs=114.4

Q ss_pred             ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCC--CCCCcEEEEEecCccccccccchheeehhhhccCCC----
Q 036195            6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMF--SDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPN----   77 (183)
Q Consensus         6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~--~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~----   77 (183)
                      +++|+  +|+|++||+.+|+||||||||||.++|+|.-  ++++|+|.|+|+++....    +..+....+.-..|    
T Consensus        17 keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~----~~ERAr~GifLafQ~P~e   92 (251)
T COG0396          17 KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELS----PDERARAGIFLAFQYPVE   92 (251)
T ss_pred             hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCC----HhHHHhcCCEEeecCCcc
Confidence            58898  4569999999999999999999999999995  789999999999987531    00000001000000    


Q ss_pred             Ccccc-------------c--c-cc--chHHHHHHHHcCCCC-ccCCCCCC-CChhhhh--e----ecCchhhc---ccc
Q 036195           78 LKSIC-------------H--E-AL--AFPCLERIYVHGCPS-LRKLPFSL-ESGKRNG--V----LIGEEEWW---NQL  128 (183)
Q Consensus        78 l~~l~-------------~--~-~~--~~~~l~vLe~l~L~~-L~~~~~~~-LSgGqk~--~----i~~~~~w~---~~l  128 (183)
                      ...+.             .  . ..  .....+.++.+++.. +.++.++. +|||||+  +    ++.+|++-   |+=
T Consensus        93 i~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~D  172 (251)
T COG0396          93 IPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPD  172 (251)
T ss_pred             CCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCC
Confidence            00000             0  0 01  123566788899976 78888875 9999997  3    36788884   778


Q ss_pred             cccCcccccccccceeecCcccccCCCCCCceeeeeecc-cceEEE
Q 036195          129 EWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRP-RYELIC  173 (183)
Q Consensus       129 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  173 (183)
                      ++.|..+-..+...++.++.. ..++++++|.=+..--. -|+|.+
T Consensus       173 SGLDIdalk~V~~~i~~lr~~-~~~~liITHy~rll~~i~pD~vhv  217 (251)
T COG0396         173 SGLDIDALKIVAEGINALREE-GRGVLIITHYQRLLDYIKPDKVHV  217 (251)
T ss_pred             cCccHHHHHHHHHHHHHHhcC-CCeEEEEecHHHHHhhcCCCEEEE
Confidence            899998888888889888888 88999999975543322 255544

>PLN03140 ABC transporter G family member; Provisional

Probab=99.81  E-value=7.2e-21  Score=179.81  Aligned_cols=161  Identities=14%  Similarity=0.038  Sum_probs=121.3

Q ss_pred             ccccccce--ecCccEEEEEcCCCCcHHHHHHHHhcCCCC--CCcEEEEEecCccccccccchheeehhhhccCCCCccc
Q 036195            6 RPHLRYIE--DDGVKIIGLYGVRGVGKSTLIKQLNDMFSD--MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSI   81 (183)
Q Consensus         6 ~~~l~~l~--i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p--~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l   81 (183)
                      +.+|++++  +++|++++|+|||||||||||++|+|..++  .+|+|.++|.+.....    +    ...+++++|....
T Consensus       893 ~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~----~----~~~igyv~Q~d~~  964 (1470)
T PLN03140        893 LQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQET----F----ARISGYCEQNDIH  964 (1470)
T ss_pred             ceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHH----h----hhheEEEcccccc
Confidence            36888664  899999999999999999999999999763  7899999997653210    0    0112222221100


Q ss_pred             c------------------cc----ccchHHHHHHHHcCCCCccCCCC-----CCCChhhhhe------ecCchhhc---
Q 036195           82 C------------------HE----ALAFPCLERIYVHGCPSLRKLPF-----SLESGKRNGV------LIGEEEWW---  125 (183)
Q Consensus        82 ~------------------~~----~~~~~~l~vLe~l~L~~L~~~~~-----~~LSgGqk~~------i~~~~~w~---  125 (183)
                      +                  ..    .....+.++++.+++.+.++..+     ..|||||||+      +..+|+.+   
T Consensus       965 ~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LD 1044 (1470)
T PLN03140        965 SPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMD 1044 (1470)
T ss_pred             CCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEe
Confidence            0                  00    01123567899999988888875     5899999983      47788886   


Q ss_pred             ccccccCcccccccccceeecCcccccCCCCCCceeee-eecccceEEEEe
Q 036195          126 NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEA-TIRPRYELICID  175 (183)
Q Consensus       126 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  175 (183)
                      ||....|..+...+...+..+..+ .++|++++|+.+. +...+|+++.++
T Consensus      1045 EPTsgLD~~~a~~v~~~L~~l~~~-g~tVI~t~Hq~~~~i~~~~D~vllL~ 1094 (1470)
T PLN03140       1045 EPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMK 1094 (1470)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCHHHHHhCCEEEEEc
Confidence            899999999999999999887655 7899999999994 678999999985

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.80  E-value=2.1e-20  Score=178.11  Aligned_cols=161  Identities=14%  Similarity=0.076  Sum_probs=119.5

Q ss_pred             cccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195            7 PHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE   84 (183)
Q Consensus         7 ~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~   84 (183)
                      ++|+++  +|++||.+||+|++|||||||+++|.|++.|++|+|.++|.++.+..    ...+ +..++++||...+|..
T Consensus      1300 ~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~----~~~L-R~~i~iVpQdp~LF~g 1374 (1522)
T TIGR00957      1300 LVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIG----LHDL-RFKITIIPQDPVLFSG 1374 (1522)
T ss_pred             ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccC----HHHH-HhcCeEECCCCcccCc
Confidence            689855  58999999999999999999999999999999999999999887531    1111 1346666776555432


Q ss_pred             -----------ccchHHHHHHHHcCCCCc-------cCCC----CCCCChhhhhe------ecCchhhc---ccccccCc
Q 036195           85 -----------ALAFPCLERIYVHGCPSL-------RKLP----FSLESGKRNGV------LIGEEEWW---NQLEWDDE  133 (183)
Q Consensus        85 -----------~~~~~~l~vLe~l~L~~L-------~~~~----~~~LSgGqk~~------i~~~~~w~---~~l~~~d~  133 (183)
                                 ..+.+..++++.+++.+.       .+..    ...|||||||+      +..++..+   |+..-.|.
T Consensus      1375 TIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~ 1454 (1522)
T TIGR00957      1375 SLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDL 1454 (1522)
T ss_pred             cHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCH
Confidence                       223356667777766322       2223    34699999983      35566665   78889999


Q ss_pred             ccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          134 ATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ++...++..+.... + .+++++++|.++.++ .+|+|+++|
T Consensus      1455 ~Te~~Iq~~l~~~~-~-~~TvI~IAHRl~ti~-~~DrIlVld 1493 (1522)
T TIGR00957      1455 ETDNLIQSTIRTQF-E-DCTVLTIAHRLNTIM-DYTRVIVLD 1493 (1522)
T ss_pred             HHHHHHHHHHHHHc-C-CCEEEEEecCHHHHH-hCCEEEEEE
Confidence            98888888776443 2 589999999997755 589999998

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.80  E-value=2e-20  Score=162.45  Aligned_cols=163  Identities=14%  Similarity=0.071  Sum_probs=112.2

Q ss_pred             cccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccc
Q 036195            5 YRPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSIC   82 (183)
Q Consensus         5 ~~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~   82 (183)
                      ..+||++|  +|++||++||+||||+||||+.++|..++.|++|+|.+||.++.+.+     +..-+..++.+.|...+|
T Consensus       480 ~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~-----~~~lr~~Ig~V~QEPvLF  554 (716)
T KOG0058|consen  480 DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDIN-----HKYLRRKIGLVGQEPVLF  554 (716)
T ss_pred             CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcC-----HHHHHHHeeeeeccceee
Confidence            45788866  58999999999999999999999999999999999999999987531     111112333333333222


Q ss_pred             c------------cccchHHHHHHHHcCC-------CC----ccCCCCCCCChhhhheecC------chhhc---ccccc
Q 036195           83 H------------EALAFPCLERIYVHGC-------PS----LRKLPFSLESGKRNGVLIG------EEEWW---NQLEW  130 (183)
Q Consensus        83 ~------------~~~~~~~l~vLe~l~L-------~~----L~~~~~~~LSgGqk~~i~~------~~~w~---~~l~~  130 (183)
                      .            +....++.++.+..++       ++    .-..+-.+|||||||+|+-      +|.-+   |..+=
T Consensus       555 s~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSA  634 (716)
T KOG0058|consen  555 SGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSA  634 (716)
T ss_pred             cccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhh
Confidence            2            2223344545444443       22    2234455799999996644      44443   55666


Q ss_pred             cCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          131 DDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       131 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      -|.+....++.-+..+...  ++++++.|-|.. ++.+|++.++|
T Consensus       635 LDaeSE~lVq~aL~~~~~~--rTVlvIAHRLST-V~~Ad~Ivvi~  676 (716)
T KOG0058|consen  635 LDAESEYLVQEALDRLMQG--RTVLVIAHRLST-VRHADQIVVID  676 (716)
T ss_pred             cchhhHHHHHHHHHHhhcC--CeEEEEehhhhH-hhhccEEEEEc
Confidence            7777777777777665555  899999999975 46688888887

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=99.80  E-value=5.9e-21  Score=146.25  Aligned_cols=156  Identities=15%  Similarity=0.046  Sum_probs=107.4

Q ss_pred             cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCc---------EEEEEecCccccccccchheeehhhhccCCCCccc
Q 036195           11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSH---------KFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSI   81 (183)
Q Consensus        11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G---------~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l   81 (183)
                      ++++.+| +++|+||||||||||+++|+|+..|..|         ++.+.|.+....      +.  ...++++++....
T Consensus        17 ~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~--~~~v~~vfq~~~~   87 (197)
T cd03278          17 TIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKP------AN--FAEVTLTFDNSDG   87 (197)
T ss_pred             eeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCC------Cc--eEEEEEEEEcCCC
Confidence            5568899 9999999999999999999999876633         455555443210      00  1223333332211


Q ss_pred             c-ccccchHHHHHHHHcCCCCccCCCCCCCChhhhhee------c----Cchhhc---ccccccCcccccccccceeecC
Q 036195           82 C-HEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGVL------I----GEEEWW---NQLEWDDEATKHVFSSKLIITT  147 (183)
Q Consensus        82 ~-~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~i------~----~~~~w~---~~l~~~d~~~~~~~~~~~~~~~  147 (183)
                      + .........++++.   ....+.++.+||+||+|++      +    ..++.+   ||...-|+..+..+...+..+.
T Consensus        88 ~~~~~~~~~~~~~l~~---~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~  164 (197)
T cd03278          88 RYSIISQGDVSEIIEA---PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFS  164 (197)
T ss_pred             ceeEEehhhHHHHHhC---CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhc
Confidence            1 10012234555555   5677889999999999832      1    344655   8899999999999998888775


Q ss_pred             cccccCCCCCCceeeeeecccceEEEEeeCCCCC
Q 036195          148 PQTVISIPQPSYTYEATIRPRYELICIDVDDTGH  181 (183)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (183)
                      .  ...|+++||++++ ++.||+++-+=-+..|-
T Consensus       165 ~--~~tiIiitH~~~~-~~~~d~v~~~~~~~~~~  195 (197)
T cd03278         165 K--ETQFIVITHRKGT-MEAADRLYGVTMQESGV  195 (197)
T ss_pred             c--CCEEEEEECCHHH-HhhcceEEEEEeccCCC
Confidence            4  3679999999987 57899999887665553

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.79  E-value=1.1e-20  Score=147.55  Aligned_cols=84  Identities=10%  Similarity=-0.122  Sum_probs=69.6

Q ss_pred             HHHHHHHcCCCC-ccCCCCCCCChhhhhe------ecCch--hhc---ccccccCcccccccccceeecCcccccCCCCC
Q 036195           90 CLERIYVHGCPS-LRKLPFSLESGKRNGV------LIGEE--EWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQP  157 (183)
Q Consensus        90 ~l~vLe~l~L~~-L~~~~~~~LSgGqk~~------i~~~~--~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  157 (183)
                      ..+.++.+++.. ..+.++.+|||||+|+      ++.+|  +.|   ||....|+.++..+..++..+..+ ..+++++
T Consensus       117 ~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~-g~tii~i  195 (226)
T cd03270         117 RLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDL-GNTVLVV  195 (226)
T ss_pred             HHHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhC-CCEEEEE
Confidence            356788899986 4788999999999983      25565  465   899999999999999999877544 7899999


Q ss_pred             CceeeeeecccceEEEEe
Q 036195          158 SYTYEATIRPRYELICID  175 (183)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~  175 (183)
                      |||++++ +.||+++.++
T Consensus       196 tH~~~~~-~~~d~i~~l~  212 (226)
T cd03270         196 EHDEDTI-RAADHVIDIG  212 (226)
T ss_pred             EeCHHHH-HhCCEEEEeC
Confidence            9999975 7999999993

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.79  E-value=2.9e-20  Score=176.73  Aligned_cols=161  Identities=19%  Similarity=0.180  Sum_probs=119.7

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      .++|+++  +|++||.+||+|++|||||||+++|.|++. ++|+|.++|.++...    ....+ +..++++||...+|.
T Consensus      1232 ~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i----~~~~l-R~~is~IpQdp~LF~ 1305 (1490)
T TIGR01271      1232 RAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSV----TLQTW-RKAFGVIPQKVFIFS 1305 (1490)
T ss_pred             cceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccC----CHHHH-HhceEEEeCCCccCc
Confidence            4688865  589999999999999999999999999996 899999999987642    11111 134667777666654


Q ss_pred             c-----------ccchHHHHHHHHcCCCCcc-------CCCC----CCCChhhhhe------ecCchhhc---ccccccC
Q 036195           84 E-----------ALAFPCLERIYVHGCPSLR-------KLPF----SLESGKRNGV------LIGEEEWW---NQLEWDD  132 (183)
Q Consensus        84 ~-----------~~~~~~l~vLe~l~L~~L~-------~~~~----~~LSgGqk~~------i~~~~~w~---~~l~~~d  132 (183)
                      .           ..+.+..++++.+++.+..       +.++    ..|||||||+      +..++..+   |+..-.|
T Consensus      1306 GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD 1385 (1490)
T TIGR01271      1306 GTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLD 1385 (1490)
T ss_pred             cCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCC
Confidence            2           1233466778887774322       2222    3599999983      35566665   8899999


Q ss_pred             cccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          133 EATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      .++...++..+.....  .+++++++|.++.++ .+|+|+++|
T Consensus      1386 ~~Te~~I~~~L~~~~~--~~TvI~IaHRl~ti~-~~DrIlvL~ 1425 (1490)
T TIGR01271      1386 PVTLQIIRKTLKQSFS--NCTVILSEHRVEALL-ECQQFLVIE 1425 (1490)
T ss_pred             HHHHHHHHHHHHHHcC--CCEEEEEecCHHHHH-hCCEEEEEE
Confidence            9998888888875432  589999999998665 599999997

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.79  E-value=5.5e-20  Score=144.81  Aligned_cols=157  Identities=9%  Similarity=0.032  Sum_probs=101.3

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHh----------------cCCCCCCc--------EEEEEecCccccccccchheeehhhh
Q 036195           17 VKIIGLYGVRGVGKSTLIKQLN----------------DMFSDMSH--------KFAIYAVSLQKKISVCSFILIRRAYF   72 (183)
Q Consensus        17 Ge~~~liGpNGaGKSTLl~~i~----------------gl~~p~~G--------~I~~~g~~~~~~~~~~~~~~l~~~~l   72 (183)
                      |++++|+||||||||||+++|+                +++.+.+|        +|.|++.+.+....  .........+
T Consensus        23 ~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~~~--~~~~~i~r~i  100 (243)
T cd03272          23 PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFPID--KEEVRLRRTI  100 (243)
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccCCC--CCEEEEEEEE
Confidence            8899999999999999999998                45556666        55555432111000  0000001124


Q ss_pred             ccCCCCcccccc-ccchHHHHHHHHcCCCC--------------------ccCCCCCCCChhhhhe--e----c----Cc
Q 036195           73 FKLPNLKSICHE-ALAFPCLERIYVHGCPS--------------------LRKLPFSLESGKRNGV--L----I----GE  121 (183)
Q Consensus        73 g~lp~l~~l~~~-~~~~~~l~vLe~l~L~~--------------------L~~~~~~~LSgGqk~~--i----~----~~  121 (183)
                      ++.++...++.. ....+....++.+++..                    ..+.++..||+||+|+  +    +    .+
T Consensus       101 g~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~  180 (243)
T cd03272         101 GLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDP  180 (243)
T ss_pred             ECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhccccccccccccCHHHHHHHHHHHHHHHhccCC
Confidence            555544334331 22334455555555432                    3457889999999882  2    1    24


Q ss_pred             hhhc---ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEeeCC
Q 036195          122 EEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICIDVDD  178 (183)
Q Consensus       122 ~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (183)
                      |..+   ||...-|+..+..+...+..+..  ...+++++|+ .++++.||+++.|+++.
T Consensus       181 ~~illlDEp~~~ld~~~~~~~~~~l~~~~~--~~~ii~~~h~-~~~~~~~d~i~~l~~~~  237 (243)
T cd03272         181 APFYLFDEIDAALDAQYRTAVANMIKELSD--GAQFITTTFR-PELLEVADKFYGVKFRN  237 (243)
T ss_pred             CCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEecC-HHHHhhCCEEEEEEEEC
Confidence            5665   88999999999999888877643  3556666666 56789999999999986

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.78  E-value=4.9e-20  Score=158.77  Aligned_cols=150  Identities=15%  Similarity=0.094  Sum_probs=110.6

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcc---
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKS---   80 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~---   80 (183)
                      +++++++  .|.+|+.+||+||||+|||||||+|+|...|.+|+|.+... +               .++|++|...   
T Consensus       335 ~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-v---------------~igyf~Q~~~~l~  398 (530)
T COG0488         335 RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-V---------------KIGYFDQHRDELD  398 (530)
T ss_pred             ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-e---------------EEEEEEehhhhcC
Confidence            5678755  58999999999999999999999999999999999987532 1               1222222110   


Q ss_pred             -----------ccccccchHHHHHHHHcCCC-CccCCCCCCCChhhhhee------cCchhhc---ccccccCccccccc
Q 036195           81 -----------ICHEALAFPCLERIYVHGCP-SLRKLPFSLESGKRNGVL------IGEEEWW---NQLEWDDEATKHVF  139 (183)
Q Consensus        81 -----------l~~~~~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~i------~~~~~w~---~~l~~~d~~~~~~~  139 (183)
                                 .++......+...+..++++ +....|+..||||||.++      ..+|..+   ||.-=-|.+++..+
T Consensus       399 ~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aL  478 (530)
T COG0488         399 PDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEAL  478 (530)
T ss_pred             ccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHH
Confidence                       01111134567788888885 456889999999999743      4455553   66666677777777


Q ss_pred             ccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          140 SSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ...+.    ++-.+++++|||-+++-+.++++|.+.
T Consensus       479 e~aL~----~f~Gtvl~VSHDr~Fl~~va~~i~~~~  510 (530)
T COG0488         479 EEALL----DFEGTVLLVSHDRYFLDRVATRIWLVE  510 (530)
T ss_pred             HHHHH----hCCCeEEEEeCCHHHHHhhcceEEEEc
Confidence            66554    567789999999999999999999886

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.78  E-value=1.2e-19  Score=172.92  Aligned_cols=159  Identities=13%  Similarity=-0.001  Sum_probs=105.5

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecC---ccccccccchheeehhhhccCCCCcc
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVS---LQKKISVCSFILIRRAYFFKLPNLKS   80 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~---~~~~~~~~~~~~l~~~~lg~lp~l~~   80 (183)
                      +++|+++  ++++||+++|+||||||||||+++|+|+++|++|+|.++|.-   .++. ..+..+..+.+.++.      
T Consensus       651 ~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~-~l~~~Ti~eNI~~g~------  723 (1522)
T TIGR00957       651 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQA-WIQNDSLRENILFGK------  723 (1522)
T ss_pred             CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCc-cccCCcHHHHhhcCC------
Confidence            4688855  589999999999999999999999999999999999998631   0000 000111111111111      


Q ss_pred             ccccccchHHHHHHHHcCCC-----------CccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccc
Q 036195           81 ICHEALAFPCLERIYVHGCP-----------SLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFS  140 (183)
Q Consensus        81 l~~~~~~~~~l~vLe~l~L~-----------~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~  140 (183)
                         ........++++.+++.           .........|||||||+      ++.+++.+   |++...|+.+...+.
T Consensus       724 ---~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~  800 (1522)
T TIGR00957       724 ---ALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIF  800 (1522)
T ss_pred             ---ccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHH
Confidence               01111223333333221           13345677899999984      47777776   899999998777776


Q ss_pred             cceeec-CcccccCCCCCCceeeeeecccceEEEEe
Q 036195          141 SKLIIT-TPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       141 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ..+... ......+++++||+++.+.. +|+++++|
T Consensus       801 ~~l~~~~~~~~~~tvIlvTH~~~~l~~-~D~ii~l~  835 (1522)
T TIGR00957       801 EHVIGPEGVLKNKTRILVTHGISYLPQ-VDVIIVMS  835 (1522)
T ss_pred             HHHhhhhhhhcCCEEEEEeCChhhhhh-CCEEEEec
Confidence            655432 22235789999999987655 99999997

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.78  E-value=7.1e-20  Score=174.11  Aligned_cols=157  Identities=12%  Similarity=0.045  Sum_probs=104.9

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecC---ccccccccchheeehhhhccCCCCcc
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVS---LQKKISVCSFILIRRAYFFKLPNLKS   80 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~---~~~~~~~~~~~~l~~~~lg~lp~l~~   80 (183)
                      +++|+++  ++++||+++|+|||||||||||++|+|+++|++|+|.++|.-   .+.. -.+..+..+.+.++. +    
T Consensus       439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~iayv~Q~~-~l~~~Ti~eNI~~g~-~----  512 (1490)
T TIGR01271       439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTS-WIMPGTIKDNIIFGL-S----  512 (1490)
T ss_pred             CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEEEEeCCC-ccCCccHHHHHHhcc-c----
Confidence            4688865  589999999999999999999999999999999999998731   0100 001112222222221 0    


Q ss_pred             ccccccchHHHHHHHHcCC---------C--CccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccc
Q 036195           81 ICHEALAFPCLERIYVHGC---------P--SLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFS  140 (183)
Q Consensus        81 l~~~~~~~~~l~vLe~l~L---------~--~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~  140 (183)
                          .......++++.+++         .  .....+...|||||||+      ++.+|+.+   ||+...|+.+...+.
T Consensus       513 ----~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~  588 (1490)
T TIGR01271       513 ----YDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIF  588 (1490)
T ss_pred             ----cchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence                001112223332222         1  12334567899999984      36777776   899999998887777


Q ss_pred             cc-eeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          141 SK-LIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       141 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      .. +..+. + ..+++++||+++.+- .||++++++
T Consensus       589 ~~~l~~~~-~-~~tvilvtH~~~~~~-~ad~ii~l~  621 (1490)
T TIGR01271       589 ESCLCKLM-S-NKTRILVTSKLEHLK-KADKILLLH  621 (1490)
T ss_pred             HHHHHHHh-c-CCeEEEEeCChHHHH-hCCEEEEEE
Confidence            53 44332 2 688999999999864 599999997

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.77  E-value=2.4e-19  Score=163.31  Aligned_cols=162  Identities=14%  Similarity=0.067  Sum_probs=111.0

Q ss_pred             ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      .+||+  ||+|++|+.++|+|||||||||++++|.+++.|++|+|.++|.++++...    ..++ ..++-+.|...+|.
T Consensus       366 v~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~----~~lr-~~iglV~QePvlF~  440 (1228)
T KOG0055|consen  366 VKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNL----KWLR-SQIGLVSQEPVLFA  440 (1228)
T ss_pred             chhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcch----HHHH-hhcCeeeechhhhc
Confidence            46777  45699999999999999999999999999999999999999998875321    0000 12222222221111


Q ss_pred             ------------cccchHHHHHHHHcCC-----------CCccCCCCCCCChhhhhee------cCchhhc---cccccc
Q 036195           84 ------------EALAFPCLERIYVHGC-----------PSLRKLPFSLESGKRNGVL------IGEEEWW---NQLEWD  131 (183)
Q Consensus        84 ------------~~~~~~~l~vLe~l~L-----------~~L~~~~~~~LSgGqk~~i------~~~~~w~---~~l~~~  131 (183)
                                  +....++.++.+..+.           .......--+|||||||+|      ..+|+-+   |+..--
T Consensus       441 ~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaL  520 (1228)
T KOG0055|consen  441 TTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSAL  520 (1228)
T ss_pred             ccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCccccc
Confidence                        1222233444333322           2233333445999999954      5566664   778888


Q ss_pred             CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      |++.+..++..++.....  ++.++++|.|..+. .+|+++.++
T Consensus       521 D~~se~~Vq~ALd~~~~g--rTTivVaHRLStIr-naD~I~v~~  561 (1228)
T KOG0055|consen  521 DAESERVVQEALDKASKG--RTTIVVAHRLSTIR-NADKIAVME  561 (1228)
T ss_pred             CHHHHHHHHHHHHHhhcC--CeEEEEeeehhhhh-ccCEEEEEE
Confidence            998888888888765554  69999999998655 499999886

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=99.76  E-value=3.8e-19  Score=149.22  Aligned_cols=164  Identities=13%  Similarity=0.106  Sum_probs=120.6

Q ss_pred             cccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccc
Q 036195            5 YRPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSIC   82 (183)
Q Consensus         5 ~~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~   82 (183)
                      .+|+++  ||++.+||.+|||||||||||||.|+|.|..+|.+|.|+++|-++....    ... --..+||+||.-.+|
T Consensus       348 ~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd----~e~-lG~hiGYLPQdVeLF  422 (580)
T COG4618         348 KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWD----REQ-LGRHIGYLPQDVELF  422 (580)
T ss_pred             CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCC----HHH-hccccCcCcccceec
Confidence            578887  5569999999999999999999999999999999999999998876531    011 114578999876665


Q ss_pred             ccc-----c-------chHHHHHHHHc-------CCCCccCCCC----CCCChhhhhe------ecCchhhc---ccccc
Q 036195           83 HEA-----L-------AFPCLERIYVH-------GCPSLRKLPF----SLESGKRNGV------LIGEEEWW---NQLEW  130 (183)
Q Consensus        83 ~~~-----~-------~~~~l~vLe~l-------~L~~L~~~~~----~~LSgGqk~~------i~~~~~w~---~~l~~  130 (183)
                      ...     .       ...+.++-...       .++.=-+.++    ..|||||||+      ++|+|.+.   ||=.-
T Consensus       423 ~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsN  502 (580)
T COG4618         423 DGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSN  502 (580)
T ss_pred             CCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCC
Confidence            421     1       11233332222       2333333333    4699999995      48999986   77777


Q ss_pred             cCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          131 DDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       131 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      -|.+....+..-+...+.+ .+.+.+++|--. ++..+|+|..+.
T Consensus       503 LD~~GE~AL~~Ai~~~k~r-G~~vvviaHRPs-~L~~~Dkilvl~  545 (580)
T COG4618         503 LDSEGEAALAAAILAAKAR-GGTVVVIAHRPS-ALASVDKILVLQ  545 (580)
T ss_pred             cchhHHHHHHHHHHHHHHc-CCEEEEEecCHH-HHhhcceeeeec
Confidence            8888888888888888888 888888898754 577888887764

>PTZ00243 ABC transporter; Provisional

Probab=99.75  E-value=1.9e-19  Score=171.63  Aligned_cols=165  Identities=13%  Similarity=0.041  Sum_probs=103.5

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecC---ccccccccchheeehhhhccCCCCcc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVS---LQKKISVCSFILIRRAYFFKLPNLKS   80 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~---~~~~~~~~~~~~l~~~~lg~lp~l~~   80 (183)
                      +++|++  |++++|++++|+||||||||||+++|+|+++|++|+|.+.+.-   .+.. ..+..+..+.+.++. +....
T Consensus       673 ~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~-~l~~~Tv~enI~~~~-~~~~~  750 (1560)
T PTZ00243        673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQA-WIMNATVRGNILFFD-EEDAA  750 (1560)
T ss_pred             ceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCC-ccCCCcHHHHHHcCC-hhhHH
Confidence            457875  5699999999999999999999999999999999999874310   0000 000111111111110 00000


Q ss_pred             cccccc-chHHHHHHHHc--CCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccc-cceeecC
Q 036195           81 ICHEAL-AFPCLERIYVH--GCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFS-SKLIITT  147 (183)
Q Consensus        81 l~~~~~-~~~~l~vLe~l--~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~-~~~~~~~  147 (183)
                      .+.... .....+.++.+  ++....+.+...|||||||+      +..+|+.+   ||+...|+.+...+. .++....
T Consensus       751 ~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~  830 (1560)
T PTZ00243        751 RLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGAL  830 (1560)
T ss_pred             HHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhh
Confidence            000000 00111223333  45555667789999999983      47778876   899999987655443 3333221


Q ss_pred             cccccCCCCCCceeeeeecccceEEEEe
Q 036195          148 PQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                        ...+++++||+++.+ ..+|++++++
T Consensus       831 --~~~TvIlvTH~~~~~-~~ad~ii~l~  855 (1560)
T PTZ00243        831 --AGKTRVLATHQVHVV-PRADYVVALG  855 (1560)
T ss_pred             --CCCEEEEEeCCHHHH-HhCCEEEEEE
Confidence              267899999999986 6799999997

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.73  E-value=8.6e-19  Score=128.35  Aligned_cols=157  Identities=14%  Similarity=0.015  Sum_probs=114.6

Q ss_pred             cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcc--ccccccchheeehhhhccCCCCccccccccc-
Q 036195           11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ--KKISVCSFILIRRAYFFKLPNLKSICHEALA-   87 (183)
Q Consensus        11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~--~~~~~~~~~~l~~~~lg~lp~l~~l~~~~~~-   87 (183)
                      .|+-++||.+.++||+|||||||+|.++-+.-|.+|+..+.+....  +.........++ ..+|      ++||.... 
T Consensus        22 ~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr-~~vg------mvfqqy~lw   94 (242)
T COG4161          22 TLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLR-RNVG------MVFQQYNLW   94 (242)
T ss_pred             eecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHH-Hhhh------hhhhhhccC
Confidence            4457899999999999999999999999999999999999875332  110000000000 1122      22322222 


Q ss_pred             -------------------------hHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCc
Q 036195           88 -------------------------FPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDE  133 (183)
Q Consensus        88 -------------------------~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~  133 (183)
                                               .+.++++..+.+..++++.+-.|||||+|+      ++++|.-+   ||..-.||
T Consensus        95 phltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfdeptaaldp  174 (242)
T COG4161          95 PHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDP  174 (242)
T ss_pred             chhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeecCcccccCH
Confidence                                     234667788889999999999999999883      36777765   77888888


Q ss_pred             ccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          134 ATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ++-..+-.+|+.+... .+.-.+++|.++..-..+-+|+-.+
T Consensus       175 eitaqvv~iikel~~t-gitqvivthev~va~k~as~vvyme  215 (242)
T COG4161         175 EITAQIVSIIKELAET-GITQVIVTHEVEVARKTASRVVYME  215 (242)
T ss_pred             HHHHHHHHHHHHHHhc-CceEEEEEeehhHHHhhhhheEeee
Confidence            8888888888777654 8888889999999999888887654

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.73  E-value=9.4e-19  Score=128.96  Aligned_cols=166  Identities=15%  Similarity=0.068  Sum_probs=115.8

Q ss_pred             ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcc-ccccccchh--eeehhhhccCCCCc-
Q 036195            6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ-KKISVCSFI--LIRRAYFFKLPNLK-   79 (183)
Q Consensus         6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~-~~~~~~~~~--~l~~~~lg~lp~l~-   79 (183)
                      -||++  ||+|+.|||+++-||+|||||||||++-|-+.|++|+|.+.-..-+ +.....+..  ..+...+||+.|.- 
T Consensus        24 LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLR  103 (235)
T COG4778          24 LPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLR  103 (235)
T ss_pred             eeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHH
Confidence            36776  5679999999999999999999999999999999999999754321 110000111  11223345544421 


Q ss_pred             cccc------------------cccchHHHHHHHHcCCC-CccCCCCCCCChhhhhee-------cCchhhc--cccccc
Q 036195           80 SICH------------------EALAFPCLERIYVHGCP-SLRKLPFSLESGKRNGVL-------IGEEEWW--NQLEWD  131 (183)
Q Consensus        80 ~l~~------------------~~~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~i-------~~~~~w~--~~l~~~  131 (183)
                      .+++                  +........++..++++ .|..+++.++||||+|++       .-.|-++  ||..-.
T Consensus       104 viPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasL  183 (235)
T COG4778         104 VIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASL  183 (235)
T ss_pred             hccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCCcccc
Confidence            1111                  11112345678888887 478999999999999854       2333333  788888


Q ss_pred             CcccccccccceeecCcccccCCCCCCceeeeeecccceEE
Q 036195          132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELI  172 (183)
Q Consensus       132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (183)
                      |...+...-.+|..-+.+ .+++.=+=||-+.--+.+||++
T Consensus       184 Da~Nr~vVveli~e~Ka~-GaAlvGIFHDeevre~vadR~~  223 (235)
T COG4778         184 DATNRAVVVELIREAKAR-GAALVGIFHDEEVREAVADRLL  223 (235)
T ss_pred             cccchHHHHHHHHHHHhc-CceEEEeeccHHHHHHHhhhee
Confidence            888888888888877766 8888888888776668888875

>PLN03130 ABC transporter C family member; Provisional

Probab=99.72  E-value=3.2e-18  Score=163.59  Aligned_cols=149  Identities=15%  Similarity=0.093  Sum_probs=105.4

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCC-cEEEEEecCccccccccchheeehhhhccCCCCcccc
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMS-HKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSIC   82 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~-G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~   82 (183)
                      +++|+++  ++++||.++|+||+|||||||+++|+|.++|++ |+|.+.+.                  ++|++|...++
T Consensus       630 ~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~------------------Iayv~Q~p~Lf  691 (1622)
T PLN03130        630 RPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGT------------------VAYVPQVSWIF  691 (1622)
T ss_pred             CceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCe------------------EEEEcCccccC
Confidence            4678855  589999999999999999999999999999999 99987542                  22333332222


Q ss_pred             c-----------cccchHHHHHHHHcCCCC-----------ccCCCCCCCChhhhhe------ecCchhhc---cccccc
Q 036195           83 H-----------EALAFPCLERIYVHGCPS-----------LRKLPFSLESGKRNGV------LIGEEEWW---NQLEWD  131 (183)
Q Consensus        83 ~-----------~~~~~~~l~vLe~l~L~~-----------L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~  131 (183)
                      .           ........++++.+++.+           ........|||||||+      +..+++.+   |+++-.
T Consensus       692 ngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSAL  771 (1622)
T PLN03130        692 NATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSAL  771 (1622)
T ss_pred             CCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCcccc
Confidence            1           112334566777666532           1122345699999984      36666665   889999


Q ss_pred             Ccccc-cccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          132 DEATK-HVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       132 d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      |+.+. +.++..+....  ..+++++++|+++ .++.+|+||.+|
T Consensus       772 D~~~~~~I~~~~l~~~l--~~kTvIlVTH~l~-~l~~aD~Ii~L~  813 (1622)
T PLN03130        772 DAHVGRQVFDKCIKDEL--RGKTRVLVTNQLH-FLSQVDRIILVH  813 (1622)
T ss_pred             CHHHHHHHHHHHhhHHh--cCCEEEEEECCHh-HHHhCCEEEEEe
Confidence            97644 45566665432  2578999999996 478899999997

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.72  E-value=2.9e-18  Score=126.94  Aligned_cols=162  Identities=10%  Similarity=-0.002  Sum_probs=111.5

Q ss_pred             cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccccc-----
Q 036195           11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHEA-----   85 (183)
Q Consensus        11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~~-----   85 (183)
                      ||++.+||+.||+|++|||||||+++|++-+.|++|+|.+.-.+-+....+ ..+..++..+.+ ...+.+.|++     
T Consensus        26 sF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~-~msEaeRR~L~R-TeWG~VhQnP~DGLR  103 (258)
T COG4107          26 SFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLY-TMSEAERRRLLR-TEWGFVHQNPRDGLR  103 (258)
T ss_pred             ceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHh-hhchHHHHHHhh-hccceeecCccccce
Confidence            778999999999999999999999999999999999999975432211000 000000000000 0001111110     


Q ss_pred             -----------------------cchHHHHHHHHcCCCC-ccCCCCCCCChhhhhe------ecCchhhc---ccccccC
Q 036195           86 -----------------------LAFPCLERIYVHGCPS-LRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDD  132 (183)
Q Consensus        86 -----------------------~~~~~l~vLe~l~L~~-L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d  132 (183)
                                             ........++.+.++. ..+-.+..+||||+|+      +...|.+.   ||....|
T Consensus       104 m~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLD  183 (258)
T COG4107         104 MQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLD  183 (258)
T ss_pred             eeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcc
Confidence                                   0113456788887753 3455568999998873      35556664   7889999


Q ss_pred             cccccccccceeecCcccccCCCCCCceeeeeecccceEEEE
Q 036195          133 EATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICI  174 (183)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (183)
                      ...+.++..++..+..+...++.|++||+-.+.=.++|..+.
T Consensus       184 VSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvm  225 (258)
T COG4107         184 VSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVM  225 (258)
T ss_pred             hhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceee
Confidence            999999999999999999999999999998776666666543

>PLN03232 ABC transporter C family member; Provisional

Probab=99.71  E-value=4.4e-18  Score=162.13  Aligned_cols=150  Identities=17%  Similarity=0.115  Sum_probs=103.4

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|+++  ++++||.++|+||+|||||||+++|+|.++|++|.+..-..                 .+++++|...++.
T Consensus       630 ~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~-----------------~Iayv~Q~p~Lf~  692 (1495)
T PLN03232        630 KPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRG-----------------SVAYVPQVSWIFN  692 (1495)
T ss_pred             CceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecC-----------------cEEEEcCcccccc
Confidence            4688855  58999999999999999999999999999999986632111                 2233333332222


Q ss_pred             -----------cccchHHHHHHHHcCCCC-cc----------CCCCCCCChhhhhe------ecCchhhc---ccccccC
Q 036195           84 -----------EALAFPCLERIYVHGCPS-LR----------KLPFSLESGKRNGV------LIGEEEWW---NQLEWDD  132 (183)
Q Consensus        84 -----------~~~~~~~l~vLe~l~L~~-L~----------~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d  132 (183)
                                 .....+..++++.+++.+ +.          ......|||||||+      +..+++.+   |+++-.|
T Consensus       693 gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD  772 (1495)
T PLN03232        693 ATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALD  772 (1495)
T ss_pred             ccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccC
Confidence                       112334566777666532 11          12234699999984      36677765   8899999


Q ss_pred             ccccc-ccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          133 EATKH-VFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       133 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +.+.. .++..+....  ..+++++++|+++. ++.+|++|.+|
T Consensus       773 ~~t~~~I~~~~l~~~l--~~kT~IlvTH~~~~-l~~aD~Ii~L~  813 (1495)
T PLN03232        773 AHVAHQVFDSCMKDEL--KGKTRVLVTNQLHF-LPLMDRIILVS  813 (1495)
T ss_pred             HHHHHHHHHHHhhhhh--cCCEEEEEECChhh-HHhCCEEEEEe
Confidence            76544 4556555432  35788999999975 78899999997

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=99.70  E-value=2.7e-18  Score=140.72  Aligned_cols=151  Identities=17%  Similarity=0.063  Sum_probs=96.9

Q ss_pred             cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccc--cc-hheeehhhhccCCCCccccccccc
Q 036195           11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISV--CS-FILIRRAYFFKLPNLKSICHEALA   87 (183)
Q Consensus        11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~--~~-~~~l~~~~lg~lp~l~~l~~~~~~   87 (183)
                      ++++++||++-|+|.|||||||+++++.|+++|++|+|.++|.++......  .. |+. ......-.+++....+.+.+
T Consensus       343 Nl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSa-vFsDyhLF~~ll~~e~~as~  421 (546)
T COG4615         343 NLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSA-VFSDYHLFDQLLGPEGKASP  421 (546)
T ss_pred             eeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHH-HhhhHhhhHhhhCCccCCCh
Confidence            678999999999999999999999999999999999999999987653210  00 000 00001111222111122333


Q ss_pred             hHHHHHHHHcCC---CCccCCCC--CCCChhhhheecCchhhccc------ccc---cCcccccccccceeecCcccccC
Q 036195           88 FPCLERIYVHGC---PSLRKLPF--SLESGKRNGVLIGEEEWWNQ------LEW---DDEATKHVFSSKLIITTPQTVIS  153 (183)
Q Consensus        88 ~~~l~vLe~l~L---~~L~~~~~--~~LSgGqk~~i~~~~~w~~~------l~~---~d~~~~~~~~~~~~~~~~~~~~~  153 (183)
                      ..+...++.+.+   ..+.+..+  -.||.|||++++.=-.|.|.      =||   .||.-+.-||...-+.-++.+.+
T Consensus       422 q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKT  501 (546)
T COG4615         422 QLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKT  501 (546)
T ss_pred             HHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCe
Confidence            444455555544   34555544  46899999865433333311      133   36777888887766666666999


Q ss_pred             CCCCCceee
Q 036195          154 IPQPSYTYE  162 (183)
Q Consensus       154 ~~~~~~~~~  162 (183)
                      |+-+|||=+
T Consensus       502 I~aIsHDd~  510 (546)
T COG4615         502 IFAISHDDH  510 (546)
T ss_pred             EEEEecCch
Confidence            999999954

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=99.68  E-value=3.3e-18  Score=132.46  Aligned_cols=154  Identities=14%  Similarity=0.030  Sum_probs=96.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHhcC-CCCCCcEEEEEe-cC-ccccc----cccchheeeh-hhhccCCCCccccccccc
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQLNDM-FSDMSHKFAIYA-VS-LQKKI----SVCSFILIRR-AYFFKLPNLKSICHEALA   87 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i~gl-~~p~~G~I~~~g-~~-~~~~~----~~~~~~~l~~-~~lg~lp~l~~l~~~~~~   87 (183)
                      +|++++|+||||||||||+++|++. +.+..+...... .+ +....    ....|..... ....+.+   .+  ....
T Consensus        27 ~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~r~~---gl--~~~~  101 (213)
T cd03279          27 NNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKYRVERSR---GL--DYDQ  101 (213)
T ss_pred             ccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEEEECCeEEEEEEec---CC--CHHH
Confidence            4789999999999999999999964 344444443320 00 00000    0000000000 0000000   00  0001


Q ss_pred             hHHHHHHHHcCCCCccCCCCCCCChhhhhee------cC----------chhhc---ccccccCcccccccccceeecCc
Q 036195           88 FPCLERIYVHGCPSLRKLPFSLESGKRNGVL------IG----------EEEWW---NQLEWDDEATKHVFSSKLIITTP  148 (183)
Q Consensus        88 ~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~i------~~----------~~~w~---~~l~~~d~~~~~~~~~~~~~~~~  148 (183)
                      +.....++..++..+.+.++.+||+||++++      +.          +|+.+   ||+...|+..+..+..++..+..
T Consensus       102 ~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~  181 (213)
T cd03279         102 FTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRT  181 (213)
T ss_pred             HHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh
Confidence            1111123445566778899999999999832      22          34554   88999999999999988887765


Q ss_pred             ccccCCCCCCceeeeeecccceEEEEe
Q 036195          149 QTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      + ..+++++||+++.+...+|++++++
T Consensus       182 ~-~~tii~itH~~~~~~~~~~~i~~~~  207 (213)
T cd03279         182 E-NRMVGVISHVEELKERIPQRLEVIK  207 (213)
T ss_pred             C-CCEEEEEECchHHHHhhCcEEEEEe
Confidence            5 7799999999999999999999987

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=99.67  E-value=4.1e-18  Score=131.20  Aligned_cols=159  Identities=13%  Similarity=-0.061  Sum_probs=100.0

Q ss_pred             ccceecCccEEEEEcCCCCcHHHHHHHHh----cCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccccc
Q 036195           10 RYIEDDGVKIIGLYGVRGVGKSTLIKQLN----DMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHEA   85 (183)
Q Consensus        10 ~~l~i~~Ge~~~liGpNGaGKSTLl~~i~----gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~~   85 (183)
                      ..+++.+| +++|+||||||||||+++|.    |...|++|.+..+...+....      ..  ..+....+... .+..
T Consensus        16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~------~~--~~v~~~f~~~~-~~~~   85 (204)
T cd03240          16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGE------VR--AQVKLAFENAN-GKKY   85 (204)
T ss_pred             eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCC------Cc--EEEEEEEEeCC-CCEE
Confidence            35667888 99999999999999999995    998888887652211111100      00  00000000000 0000


Q ss_pred             cchHHHHHHHHcC------CCCccCCCCCCCChhhhhe------------ecCchhhc---ccccccCccccc-ccccce
Q 036195           86 LAFPCLERIYVHG------CPSLRKLPFSLESGKRNGV------------LIGEEEWW---NQLEWDDEATKH-VFSSKL  143 (183)
Q Consensus        86 ~~~~~l~vLe~l~------L~~L~~~~~~~LSgGqk~~------------i~~~~~w~---~~l~~~d~~~~~-~~~~~~  143 (183)
                      ...+..++.+++.      +..+.+.++.+||+||+++            +..+|+.+   ||....|+..+. .+..++
T Consensus        86 ~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l  165 (204)
T cd03240          86 TITRSLAILENVIFCHQGESNWPLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEII  165 (204)
T ss_pred             EEEEEhhHhhceeeechHHHHHHHhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHH
Confidence            0000001111110      1123377889999999883            14577775   889999999988 999999


Q ss_pred             eecCcccccCCCCCCceeeeeecccceEEEEeeCCC
Q 036195          144 IITTPQTVISIPQPSYTYEATIRPRYELICIDVDDT  179 (183)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (183)
                      ..+..+...+++++||+.+.+ +.+|+++-++=|.-
T Consensus       166 ~~~~~~~~~~iiiitH~~~~~-~~~d~i~~l~~~~~  200 (204)
T cd03240         166 EERKSQKNFQLIVITHDEELV-DAADHIYRVEKDGR  200 (204)
T ss_pred             HHHHhccCCEEEEEEecHHHH-hhCCEEEEEeeCCC
Confidence            877666578899999998865 67999998876543

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]

Probab=99.66  E-value=4.4e-17  Score=136.73  Aligned_cols=163  Identities=14%  Similarity=0.061  Sum_probs=107.6

Q ss_pred             cccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccc
Q 036195            5 YRPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSIC   82 (183)
Q Consensus         5 ~~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~   82 (183)
                      -+|+|+  ||++.+|+.+||+||+|+||||++|++..++..++|.|.++|+|+.+-.    ...+ +..+|-+||...+|
T Consensus       550 ~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt----~~SL-Rs~IGVVPQDtvLF  624 (790)
T KOG0056|consen  550 GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVT----QSSL-RSSIGVVPQDTVLF  624 (790)
T ss_pred             CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHH----HHHH-HHhcCcccCcceee
Confidence            578887  5569999999999999999999999999999999999999999986521    1111 13566777765555


Q ss_pred             ccc------------cchHHHHHHHH-------cCCCCccC----CCCCCCChhhhhee------cCchhhc---ccccc
Q 036195           83 HEA------------LAFPCLERIYV-------HGCPSLRK----LPFSLESGKRNGVL------IGEEEWW---NQLEW  130 (183)
Q Consensus        83 ~~~------------~~~~~l~vLe~-------l~L~~L~~----~~~~~LSgGqk~~i------~~~~~w~---~~l~~  130 (183)
                      .+.            ...++.++.+.       ++.++--+    .+.-.|||||||++      .-.|..+   |..+-
T Consensus       625 NdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSA  704 (790)
T KOG0056|consen  625 NDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSA  704 (790)
T ss_pred             cceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhh
Confidence            431            12223333222       33443323    23346999999954      3444443   44555


Q ss_pred             cCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          131 DDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       131 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      .|.++...++.-+..+-  ..+..+++.|-|..+ -.+|.+.||+
T Consensus       705 LDT~tER~IQaaL~rlc--a~RTtIVvAHRLSTi-vnAD~ILvi~  746 (790)
T KOG0056|consen  705 LDTNTERAIQAALARLC--ANRTTIVVAHRLSTI-VNADLILVIS  746 (790)
T ss_pred             cCCccHHHHHHHHHHHh--cCCceEEEeeeehhe-ecccEEEEEe
Confidence            55555544444433222  257788889998754 5789999997

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.66  E-value=1.4e-17  Score=131.96  Aligned_cols=155  Identities=14%  Similarity=0.064  Sum_probs=102.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHhcCCCCC-CcEEEEEec-Ccccc----------cc-cc----------------chhe
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQLNDMFSDM-SHKFAIYAV-SLQKK----------IS-VC----------------SFIL   66 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i~gl~~p~-~G~I~~~g~-~~~~~----------~~-~~----------------~~~~   66 (183)
                      ...+++|+||||||||||+++|++++.|+ .|++.+.+. ++...          .. .+                ..+.
T Consensus        24 ~~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV  103 (251)
T cd03273          24 DPQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITV  103 (251)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEE
Confidence            35599999999999999999999999886 457777654 22110          00 00                0001


Q ss_pred             eehhhhccCCCCcc-cc-ccccchHHHHHHHHcCCC--------------------CccCCCCCCCChhhhh--eec---
Q 036195           67 IRRAYFFKLPNLKS-IC-HEALAFPCLERIYVHGCP--------------------SLRKLPFSLESGKRNG--VLI---  119 (183)
Q Consensus        67 l~~~~lg~lp~l~~-l~-~~~~~~~~l~vLe~l~L~--------------------~L~~~~~~~LSgGqk~--~i~---  119 (183)
                      .+.+..+.  .... +. .......+.++++.+++.                    ...+.++.+||+||+|  .++   
T Consensus       104 ~r~I~~~~--~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al  181 (251)
T cd03273         104 TRQIVLGG--TNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLIL  181 (251)
T ss_pred             EEEEEcCC--ceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHH
Confidence            11011100  0000 10 111234567788888885                    4456788999999998  222   


Q ss_pred             -----Cchhhc---ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          120 -----GEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       120 -----~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                           ..|+.+   ||....|+..+..+..++..+. + ..+++++||+ +++++.||++|-+-
T Consensus       182 ~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~-g~~ii~iSH~-~~~~~~~d~v~~~~  242 (251)
T cd03273         182 ALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-K-GSQFIVVSLK-EGMFNNANVLFRTR  242 (251)
T ss_pred             HHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-C-CCEEEEEECC-HHHHHhCCEEEEEE
Confidence                 345665   8899999999999988887764 3 5689999999 77777899997654

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.64  E-value=1.6e-16  Score=145.06  Aligned_cols=163  Identities=15%  Similarity=0.078  Sum_probs=109.4

Q ss_pred             cccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccc
Q 036195            5 YRPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSIC   82 (183)
Q Consensus         5 ~~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~   82 (183)
                      ..+||++|  ++++|+.+|||||+||||||.+.+|-+++.|++|.|.++|.++.+.+..     .-+..++-+.|-..+|
T Consensus      1002 ~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~-----~LR~~i~lVsQEP~LF 1076 (1228)
T KOG0055|consen 1002 DVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLK-----WLRKQIGLVSQEPVLF 1076 (1228)
T ss_pred             CchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHH-----HHHHhcceeccCchhh
Confidence            45788865  5899999999999999999999999999999999999999998763210     0011222222222222


Q ss_pred             c------------cccchHHHHHHHHc-------CCCCccCCC----CCCCChhhhhee------cCchhhc---ccccc
Q 036195           83 H------------EALAFPCLERIYVH-------GCPSLRKLP----FSLESGKRNGVL------IGEEEWW---NQLEW  130 (183)
Q Consensus        83 ~------------~~~~~~~l~vLe~l-------~L~~L~~~~----~~~LSgGqk~~i------~~~~~w~---~~l~~  130 (183)
                      .            .....++.++.+..       .+|.-.+.+    -.+|||||||||      ..+|+.+   |..+=
T Consensus      1077 ~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSA 1156 (1228)
T KOG0055|consen 1077 NGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSA 1156 (1228)
T ss_pred             cccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchh
Confidence            1            11223344444433       344444444    457999999954      5566654   44565


Q ss_pred             cCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          131 DDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       131 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      -|-+....+|.-++....  .++.+++.|-|- ||+.||.++++|
T Consensus      1157 LDseSErvVQeALd~a~~--gRT~IvIAHRLS-TIqnaD~I~Vi~ 1198 (1228)
T KOG0055|consen 1157 LDSESERVVQEALDRAME--GRTTIVIAHRLS-TIQNADVIAVLK 1198 (1228)
T ss_pred             hhhhhHHHHHHHHHHhhc--CCcEEEEecchh-hhhcCCEEEEEE
Confidence            666666666665554433  488889999885 689999999987

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=99.63  E-value=8.3e-17  Score=132.74  Aligned_cols=164  Identities=15%  Similarity=0.073  Sum_probs=114.7

Q ss_pred             ccccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccc
Q 036195            4 LYRPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSI   81 (183)
Q Consensus         4 ~~~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l   81 (183)
                      .++|+|.  |+++.+|+.++++||+|+||||+++++-.++.+++|.|.++|++++...     ....+..++-+||...+
T Consensus       274 ~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vt-----q~slR~aIg~VPQDtvL  348 (497)
T COG5265         274 PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVT-----QQSLRRAIGIVPQDTVL  348 (497)
T ss_pred             ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhH-----HHHHHHHhCcCccccee
Confidence            4788887  5569999999999999999999999999999999999999999987521     11122456667775555


Q ss_pred             cccc------------cchHHHHHHHHcC-------CCCccCCCCC----CCChhhhhee------cCchhhc---cccc
Q 036195           82 CHEA------------LAFPCLERIYVHG-------CPSLRKLPFS----LESGKRNGVL------IGEEEWW---NQLE  129 (183)
Q Consensus        82 ~~~~------------~~~~~l~vLe~l~-------L~~L~~~~~~----~LSgGqk~~i------~~~~~w~---~~l~  129 (183)
                      +.+.            ...++.++.+...       +|+..+..+.    .|||||||++      .-+|.-+   |..+
T Consensus       349 FNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deats  428 (497)
T COG5265         349 FNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATS  428 (497)
T ss_pred             hhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhh
Confidence            4321            1223333333332       3444444444    4899999943      3344443   5566


Q ss_pred             ccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          130 WDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       130 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      -.|-.+...++.-++...  ..+..+++-|-|..+ ..+|++||+|
T Consensus       429 aldt~te~~iq~~l~~~~--~~rttlviahrlsti-~~adeiivl~  471 (497)
T COG5265         429 ALDTHTEQAIQAALREVS--AGRTTLVIAHRLSTI-IDADEIIVLD  471 (497)
T ss_pred             HhhhhHHHHHHHHHHHHh--CCCeEEEEeehhhhc-cCCceEEEee
Confidence            667677777776666544  478899999999754 5689999998

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.63  E-value=5.1e-17  Score=137.32  Aligned_cols=156  Identities=12%  Similarity=0.027  Sum_probs=106.5

Q ss_pred             ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcccc--ccccchheeehhhhccCCCCccccc-cccch
Q 036195           12 IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKK--ISVCSFILIRRAYFFKLPNLKSICH-EALAF   88 (183)
Q Consensus        12 l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~--~~~~~~~~l~~~~lg~lp~l~~l~~-~~~~~   88 (183)
                      |-++.++.+++|||||||||||||++.|.+.|+.|.|.-.-...-..  ........+..-.+.+   ....+. .....
T Consensus       411 fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~---~~~~~~~~~~~e  487 (614)
T KOG0927|consen  411 FGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEF---MMPKFPDEKELE  487 (614)
T ss_pred             cccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHH---HHHhccccchHH
Confidence            45899999999999999999999999999999999996543221100  0000000000000000   000111 12233


Q ss_pred             HHHHHHHHcCCC-CccCCCCCCCChhhhhee------cCchhhc---ccccccCcccccccccceeecCcccccCCCCCC
Q 036195           89 PCLERIYVHGCP-SLRKLPFSLESGKRNGVL------IGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPS  158 (183)
Q Consensus        89 ~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~i------~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (183)
                      ....++..+|+. +....|+.+||.|||++|      .-+|..+   ||+...|.+..+.+...++.    .-.++..+|
T Consensus       488 ~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe----~~Ggvv~vS  563 (614)
T KOG0927|consen  488 EMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINE----FPGGVVLVS  563 (614)
T ss_pred             HHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhc----cCCceeeee
Confidence            466788999997 678889999999999843      3344443   88999999988888888763    456788899


Q ss_pred             ceeeeeecccceEEEE
Q 036195          159 YTYEATIRPRYELICI  174 (183)
Q Consensus       159 ~~~~~~~~~~~~~~~~  174 (183)
                      ||+..+-..++|++..
T Consensus       564 HDfrlI~qVaeEi~~c  579 (614)
T KOG0927|consen  564 HDFRLISQVAEEIWVC  579 (614)
T ss_pred             chhhHHHHHHHHhHhh
Confidence            9999999999988754

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.63  E-value=1.3e-16  Score=127.00  Aligned_cols=84  Identities=8%  Similarity=-0.075  Sum_probs=68.9

Q ss_pred             HHHHHHHcCCCC-ccCCCCCCCChhhhhee------cCc---hhhc---ccccccCcccccccccceeecCcccccCCCC
Q 036195           90 CLERIYVHGCPS-LRKLPFSLESGKRNGVL------IGE---EEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQ  156 (183)
Q Consensus        90 ~l~vLe~l~L~~-L~~~~~~~LSgGqk~~i------~~~---~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~  156 (183)
                      ..++++.+++.. ..++++.+|||||+|++      ..+   |++|   ||...-|+..+..+..++..+..+ ..++++
T Consensus       149 ~~~~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~-g~tvIi  227 (261)
T cd03271         149 KLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDK-GNTVVV  227 (261)
T ss_pred             HHHHHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEE
Confidence            466788899987 47899999999998832      333   5676   899999999999999998877644 789999


Q ss_pred             CCceeeeeecccceEEEEe
Q 036195          157 PSYTYEATIRPRYELICID  175 (183)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~  175 (183)
                      ++||++++ +.+|+++.+.
T Consensus       228 itH~~~~i-~~aD~ii~Lg  245 (261)
T cd03271         228 IEHNLDVI-KCADWIIDLG  245 (261)
T ss_pred             EeCCHHHH-HhCCEEEEec
Confidence            99999986 5799988883

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.62  E-value=1.2e-16  Score=140.65  Aligned_cols=155  Identities=14%  Similarity=0.077  Sum_probs=106.8

Q ss_pred             cccccccce--ecCccEEEEEcCCCCcHHHHHHHHhcCCCC---CCcEEEEEecCccccc-------------cccchhe
Q 036195            5 YRPHLRYIE--DDGVKIIGLYGVRGVGKSTLIKQLNDMFSD---MSHKFAIYAVSLQKKI-------------SVCSFIL   66 (183)
Q Consensus         5 ~~~~l~~l~--i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p---~~G~I~~~g~~~~~~~-------------~~~~~~~   66 (183)
                      ++.+|++++  +++||+.||+||+||||||||++|+|-..+   .+|+|.++|+......             .....++
T Consensus        42 ~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV  121 (613)
T KOG0061|consen   42 TKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTV  121 (613)
T ss_pred             cceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccH
Confidence            688899886  899999999999999999999999999864   7999999995433210             0111222


Q ss_pred             eehhhhccCCCCcc-ccccccchHHHHHHHHcCCCCccCCCCC-----CCChhhhhee------cCchhhc---cccccc
Q 036195           67 IRRAYFFKLPNLKS-ICHEALAFPCLERIYVHGCPSLRKLPFS-----LESGKRNGVL------IGEEEWW---NQLEWD  131 (183)
Q Consensus        67 l~~~~lg~lp~l~~-l~~~~~~~~~l~vLe~l~L~~L~~~~~~-----~LSgGqk~~i------~~~~~w~---~~l~~~  131 (183)
                      .+.+.....-++.. +........+.++++.+++.+.++..++     .+||||||++      ..+|..+   ||..+-
T Consensus       122 ~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGL  201 (613)
T KOG0061|consen  122 RETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGL  201 (613)
T ss_pred             HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCc
Confidence            22222111111110 1112223467889999999988888886     5999999843      5556665   888888


Q ss_pred             CcccccccccceeecCcccccCCCCCCce
Q 036195          132 DEATKHVFSSKLIITTPQTVISIPQPSYT  160 (183)
Q Consensus       132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (183)
                      |...-..+-..++.+..+ ++.|+++=|-
T Consensus       202 DS~sA~~vv~~Lk~lA~~-grtVi~tIHQ  229 (613)
T KOG0061|consen  202 DSFSALQVVQLLKRLARS-GRTVICTIHQ  229 (613)
T ss_pred             chhhHHHHHHHHHHHHhC-CCEEEEEEeC
Confidence            876666666677777777 7777766554

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.62  E-value=2.5e-16  Score=146.29  Aligned_cols=162  Identities=14%  Similarity=0.095  Sum_probs=114.3

Q ss_pred             cccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195            7 PHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE   84 (183)
Q Consensus         7 ~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~   84 (183)
                      +||+++  +|++||.+||+|..|||||||+.++-++..|.+|+|.+||.|+.+.    ....++ ..++-.||...+|..
T Consensus      1154 ~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~i----gL~dLR-srlsIIPQdPvLFsG 1228 (1381)
T KOG0054|consen 1154 LVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKI----GLHDLR-SRLSIIPQDPVLFSG 1228 (1381)
T ss_pred             chhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccc----cHHHHH-hcCeeeCCCCceecC
Confidence            567755  5999999999999999999999999999999999999999998753    112222 234555666655542


Q ss_pred             c-----------cchHHHHHHHHcCCCCc-------cCCCC----CCCChhhhhe------ecCchhhc---ccccccCc
Q 036195           85 A-----------LAFPCLERIYVHGCPSL-------RKLPF----SLESGKRNGV------LIGEEEWW---NQLEWDDE  133 (183)
Q Consensus        85 ~-----------~~~~~l~vLe~l~L~~L-------~~~~~----~~LSgGqk~~------i~~~~~w~---~~l~~~d~  133 (183)
                      .           .+.+.=+++|.+++.+.       .+.++    ..+|-||||.      +..+.+-+   |...-.|+
T Consensus      1229 TvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~ 1308 (1381)
T KOG0054|consen 1229 TVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDP 1308 (1381)
T ss_pred             ccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCCh
Confidence            1           12234556666666332       22233    3489999982      23333333   66778888


Q ss_pred             ccccccccceeecCcccccCCCCCCceeeeeecccceEEEEee
Q 036195          134 ATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICIDV  176 (183)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (183)
                      ++-..+|.-|..- .. .|+|+-+-|.+|.||+ ||||+++|-
T Consensus      1309 ~TD~lIQ~tIR~~-F~-dcTVltIAHRl~TVmd-~DrVlVld~ 1348 (1381)
T KOG0054|consen 1309 ETDALIQKTIREE-FK-DCTVLTIAHRLNTVMD-SDRVLVLDA 1348 (1381)
T ss_pred             HHHHHHHHHHHHH-hc-CCeEEEEeeccchhhh-cCeEEEeeC
Confidence            7777777655432 22 6899999999999996 799999983

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.60  E-value=1.8e-16  Score=131.92  Aligned_cols=158  Identities=13%  Similarity=0.067  Sum_probs=110.2

Q ss_pred             eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccc----cchheeehhhhccCCCCccccccccch
Q 036195           13 EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISV----CSFILIRRAYFFKLPNLKSICHEALAF   88 (183)
Q Consensus        13 ~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~----~~~~~l~~~~lg~lp~l~~l~~~~~~~   88 (183)
                      ++..||++|++||||-||||+.++|+|.++|++|.  ..+..+.-+...    ..-++...  +..  ...+.  ....+
T Consensus       363 ~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~--~~~~~vSyKPQyI~~~~~gtV~~~--l~~--~~~~~--~~~s~  434 (591)
T COG1245         363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS--EEDLKVSYKPQYISPDYDGTVEDL--LRS--AIRSA--FGSSY  434 (591)
T ss_pred             eeecceEEEEECCCCcchHHHHHHHhccccCCCCC--CccceEeecceeecCCCCCcHHHH--HHH--hhhhh--cccch
Confidence            46889999999999999999999999999999996  111111100000    00000000  000  00000  00112


Q ss_pred             HHHHHHHHcCCCCccCCCCCCCChhhhhee------cCchhhc---ccccccCcccccccccceeecCcccccCCCCCCc
Q 036195           89 PCLERIYVHGCPSLRKLPFSLESGKRNGVL------IGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSY  159 (183)
Q Consensus        89 ~~l~vLe~l~L~~L~~~~~~~LSgGqk~~i------~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (183)
                      -..++++-+++..+.++++..|||||.|++      ..+.+..   ||-...|.+.+......|.-+....-.+.++++|
T Consensus       435 ~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdH  514 (591)
T COG1245         435 FKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDH  514 (591)
T ss_pred             hHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEec
Confidence            235677888999999999999999998832      4455553   7888888888888888888888888889999999


Q ss_pred             eeeeeecccceEEEEeeCC
Q 036195          160 TYEATIRPRYELICIDVDD  178 (183)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~  178 (183)
                      |+-+.-=.|||+|+.+=..
T Consensus       515 Di~~~dyvsDr~ivF~GeP  533 (591)
T COG1245         515 DIYMIDYVSDRLIVFEGEP  533 (591)
T ss_pred             ceehhhhhhceEEEEecCC
Confidence            9999989999999987543

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.60  E-value=1.1e-17  Score=129.61  Aligned_cols=82  Identities=13%  Similarity=-0.034  Sum_probs=64.6

Q ss_pred             HHHHHcCCCCccCCCCCCCChhhhhe--e----c----Cchhhc---ccccccCcccccccccceeecCcccccCCCCCC
Q 036195           92 ERIYVHGCPSLRKLPFSLESGKRNGV--L----I----GEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPS  158 (183)
Q Consensus        92 ~vLe~l~L~~L~~~~~~~LSgGqk~~--i----~----~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (183)
                      ++++.++++...+.++..+|+||+++  +    +    ..|+.+   ||....|+..+..+...+..+..  ...++++|
T Consensus       110 ~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~--~~~~iivs  187 (212)
T cd03274         110 EVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTK--NAQFIVIS  187 (212)
T ss_pred             cEEEeeccccccccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcC--CCEEEEEE
Confidence            45567777888888899999999882  2    2    135665   88999999999999999998753  36788889


Q ss_pred             ceeeeeecccceEEEEee
Q 036195          159 YTYEATIRPRYELICIDV  176 (183)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~  176 (183)
                      |+ +++++.||+++.+--
T Consensus       188 ~~-~~~~~~~d~v~~~~~  204 (212)
T cd03274         188 LR-NNMFELADRLVGIYK  204 (212)
T ss_pred             Cc-HHHHHhCCEEEEEEe
Confidence            98 577899999987743

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.59  E-value=3.4e-16  Score=132.92  Aligned_cols=160  Identities=13%  Similarity=0.033  Sum_probs=119.9

Q ss_pred             cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcc----------
Q 036195           11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKS----------   80 (183)
Q Consensus        11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~----------   80 (183)
                      ||++.+||++||.|-=|||+|-|+++|.|..++.+|+|.++|+++.-..    +...-...++|+|..+.          
T Consensus       279 Sf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~s----p~~Ai~~Gi~~v~EDRk~~Gl~l~~sI  354 (500)
T COG1129         279 SFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRS----PRDAIKAGIAYVPEDRKSEGLVLDMSI  354 (500)
T ss_pred             eeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCC----HHHHHHcCCEeCCcccccCcCcCCCcH
Confidence            6889999999999999999999999999999999999999998765321    00011112333333210          


Q ss_pred             -----------------ccccccchHHHHHHHHcCCC-CccCCCCCCCChhhhhe------ecCchhhc---ccccccCc
Q 036195           81 -----------------ICHEALAFPCLERIYVHGCP-SLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDE  133 (183)
Q Consensus        81 -----------------l~~~~~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~  133 (183)
                                       +............++.+++. .-.+.++.+||||.+|+      +..+|+.+   ||..+.|.
T Consensus       355 ~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDV  434 (500)
T COG1129         355 AENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDV  434 (500)
T ss_pred             HHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCccc
Confidence                             00001111234556666653 23558899999997772      35666665   89999999


Q ss_pred             ccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          134 ATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      .+|..+|.++..+..+ ..+|+|+|-++.+++..||||++.-
T Consensus       435 GAK~eIy~li~~lA~~-G~ail~iSSElpEll~~~DRIlVm~  475 (500)
T COG1129         435 GAKAEIYRLIRELAAE-GKAILMISSELPELLGLSDRILVMR  475 (500)
T ss_pred             chHHHHHHHHHHHHHC-CCEEEEEeCChHHHHhhCCEEEEEE
Confidence            9999999999999999 9999999999999999999999864

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.58  E-value=5.1e-16  Score=122.83  Aligned_cols=157  Identities=13%  Similarity=0.030  Sum_probs=98.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecC-c-ccc-----------c-cccchheeehhhhcc-CCC-Ccc--
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVS-L-QKK-----------I-SVCSFILIRRAYFFK-LPN-LKS--   80 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~-~-~~~-----------~-~~~~~~~l~~~~lg~-lp~-l~~--   80 (183)
                      +++|+||||||||||+.+|++++.+.+|++...+.. + ...           . ..+....-....+.. +.. ...  
T Consensus        24 ~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~  103 (247)
T cd03275          24 FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSYR  103 (247)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEEE
Confidence            999999999999999999999998887877654321 0 000           0 000000000000000 000 000  


Q ss_pred             ccc-cccchHHHHHHHHcCCCC--------------cc--------CCCCCCCChhhhhee------cC----chhhc--
Q 036195           81 ICH-EALAFPCLERIYVHGCPS--------------LR--------KLPFSLESGKRNGVL------IG----EEEWW--  125 (183)
Q Consensus        81 l~~-~~~~~~~l~vLe~l~L~~--------------L~--------~~~~~~LSgGqk~~i------~~----~~~w~--  125 (183)
                      +.. ........+.++.+++..              +.        +.++.+||+||++++      +.    .|+.+  
T Consensus       104 ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lll  183 (247)
T cd03275         104 INGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVL  183 (247)
T ss_pred             ECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEE
Confidence            001 111223456777777731              22        234589999998822      22    36665  


Q ss_pred             -ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEeeC
Q 036195          126 -NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICIDVD  177 (183)
Q Consensus       126 -~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (183)
                       ||....|+..+..+..++..+..+ ..+++++||+.+ .++.||++|++.-|
T Consensus       184 DEPt~~LD~~~~~~l~~~i~~~~~~-g~~vi~isH~~~-~~~~~d~i~~~~~~  234 (247)
T cd03275         184 DEVDAALDNTNVGKVASYIREQAGP-NFQFIVISLKEE-FFSKADALVGVYRD  234 (247)
T ss_pred             ecccccCCHHHHHHHHHHHHHhccC-CcEEEEEECCHH-HHhhCCeEEEEEec
Confidence             889999999999999988887655 788999999955 57899999999765

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.53  E-value=4.3e-15  Score=113.91  Aligned_cols=156  Identities=12%  Similarity=0.012  Sum_probs=94.5

Q ss_pred             eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccccc----ch
Q 036195           13 EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHEAL----AF   88 (183)
Q Consensus        13 ~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~~~----~~   88 (183)
                      ++.+| +.+|+||||||||||+.+|......... ....+......... . ..  ...+....+....+.+..    ..
T Consensus        18 ~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~-~-~~--~~~i~~~~~~~~~~~~~~~~~~~~   91 (198)
T cd03276          18 EFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKD-G-ES--SAKITVTLKNQGLDANPLCVLSQD   91 (198)
T ss_pred             ecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhC-C-CC--eEEEEEEEEcCCccCCcCCHHHHH
Confidence            34555 8899999999999999999855433321 11112211110000 0 00  000111111111111111    11


Q ss_pred             HHHHHHHHcCCCCccCCCCCCCChhhhh--ee--------cCchhhc---ccccccCcccccccccceeecCcc--cccC
Q 036195           89 PCLERIYVHGCPSLRKLPFSLESGKRNG--VL--------IGEEEWW---NQLEWDDEATKHVFSSKLIITTPQ--TVIS  153 (183)
Q Consensus        89 ~~l~vLe~l~L~~L~~~~~~~LSgGqk~--~i--------~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~--~~~~  153 (183)
                      ...++++.   ....+.++.+||+||++  .+        ..+|+.+   ||....|+..+..+..++.....+  ....
T Consensus        92 ~~~~~l~~---~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~  168 (198)
T cd03276          92 MARSFLTS---NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQF  168 (198)
T ss_pred             HHHHHhcc---ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEE
Confidence            23344444   67788899999999998  22        2577776   899999999998888888765433  2457


Q ss_pred             CCCCCceeeeeecccceEEEEeeCC
Q 036195          154 IPQPSYTYEATIRPRYELICIDVDD  178 (183)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~  178 (183)
                      |++++|+++.+++. |+|-++-+-|
T Consensus       169 iii~th~~~~i~~~-d~v~~~~~~~  192 (198)
T cd03276         169 IFITPQDISGLASS-DDVKVFRMKD  192 (198)
T ss_pred             EEEECCcccccccc-cceeEEEecC
Confidence            99999999999987 9988776544

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=99.51  E-value=3.8e-16  Score=119.85  Aligned_cols=127  Identities=11%  Similarity=-0.012  Sum_probs=87.0

Q ss_pred             ccceecCcc-EEEEEcCCCCcHHHHHHHHh--------cCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcc
Q 036195           10 RYIEDDGVK-IIGLYGVRGVGKSTLIKQLN--------DMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKS   80 (183)
Q Consensus        10 ~~l~i~~Ge-~~~liGpNGaGKSTLl~~i~--------gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~   80 (183)
                      -++++.+|+ +++|+||||||||||+|+|+        |+.-|....+                      .++++.+.  
T Consensus        20 ~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~----------------------~~~~~~~~--   75 (200)
T cd03280          20 LDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS----------------------SLPVFENI--   75 (200)
T ss_pred             ceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc----------------------cCcCccEE--
Confidence            377899995 89999999999999999999        5544432211                      11111111  


Q ss_pred             ccccccchHHHHHHHHcCCCCccCCCCCCCChhhhh--ee---cCchhhc---ccccccCcccccccc-cceeecCcccc
Q 036195           81 ICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNG--VL---IGEEEWW---NQLEWDDEATKHVFS-SKLIITTPQTV  151 (183)
Q Consensus        81 l~~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~--~i---~~~~~w~---~~l~~~d~~~~~~~~-~~~~~~~~~~~  151 (183)
                                   +..++.........+++|+|+++  .+   ..+|.|+   |+...-|+..+..+. .++..+.. ..
T Consensus        76 -------------~~~lg~~~~l~~~~s~fs~g~~~~~~i~~~~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~-~~  141 (200)
T cd03280          76 -------------FADIGDEQSIEQSLSTFSSHMKNIARILQHADPDSLVLLDELGSGTDPVEGAALAIAILEELLE-RG  141 (200)
T ss_pred             -------------EEecCchhhhhcCcchHHHHHHHHHHHHHhCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHh-cC
Confidence                         11222233456667899999988  33   4578886   889999988877764 45555443 36


Q ss_pred             cCCCCCCceeeeeecccceEEEEe
Q 036195          152 ISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +.++++||+ +...+.+|+++.++
T Consensus       142 ~~vi~~tH~-~~l~~~~d~~~~l~  164 (200)
T cd03280         142 ALVIATTHY-GELKAYAYKREGVE  164 (200)
T ss_pred             CEEEEECCH-HHHHHHHhcCCCeE
Confidence            789999998 56678899988774

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.49  E-value=6.5e-15  Score=123.62  Aligned_cols=159  Identities=16%  Similarity=0.107  Sum_probs=118.1

Q ss_pred             cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCc-cccccccchheeehhhhccCCCCcc---------
Q 036195           11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSL-QKKISVCSFILIRRAYFFKLPNLKS---------   80 (183)
Q Consensus        11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-~~~~~~~~~~~l~~~~lg~lp~l~~---------   80 (183)
                      ||+|.+||++||.|-.|.|-+.|+.+|+|+.+|.+|+|.++|+++ ...    ....+....++++|..+.         
T Consensus       278 s~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~----~~~~~r~~G~~~VPedR~~~Glv~~~s  353 (501)
T COG3845         278 SFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRL----SPRERRRLGLAYVPEDRHGHGLVLDLS  353 (501)
T ss_pred             eeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccC----CHHHHHhcCCccCChhhccCccccCcc
Confidence            678999999999999999999999999999999999999999986 211    111122233334443210         


Q ss_pred             --------------ccc-cccc-----hHHHHHHHHcCCC-CccCCCCCCCChhhhh------eecCchhhc---ccccc
Q 036195           81 --------------ICH-EALA-----FPCLERIYVHGCP-SLRKLPFSLESGKRNG------VLIGEEEWW---NQLEW  130 (183)
Q Consensus        81 --------------l~~-~~~~-----~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~------~i~~~~~w~---~~l~~  130 (183)
                                    ++. ....     .-..++++.++.. .-...|..+||||++|      ++..+|+.+   .|..+
T Consensus       354 l~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrG  433 (501)
T COG3845         354 LAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRG  433 (501)
T ss_pred             HHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCCEEEEcCCCcc
Confidence                          000 0011     1245677777775 4456778999999776      245666665   78889


Q ss_pred             cCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEE
Q 036195          131 DDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICI  174 (183)
Q Consensus       131 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (183)
                      .|..+-+.+...+...+.+ ..+|+.+|.||++++..|||+.++
T Consensus       434 LDvgA~~~I~~~l~e~r~~-G~AVLLiS~dLDEil~lsDrIaVi  476 (501)
T COG3845         434 LDVGAIEFIHERLLELRDA-GKAVLLISEDLDEILELSDRIAVI  476 (501)
T ss_pred             ccHHHHHHHHHHHHHHHhc-CCEEEEEehhHHHHHHhhheeeee
Confidence            9998888888888877777 999999999999999999999876

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=99.46  E-value=2.9e-14  Score=123.53  Aligned_cols=148  Identities=16%  Similarity=0.084  Sum_probs=95.8

Q ss_pred             cccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEec-CccccccccchheeehhhhccCCCCccccc
Q 036195            7 PHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAV-SLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         7 ~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~-~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +.++  +|++++||.+-|.||||||||||+|+|+|+-+--+|+|.+-.. ++--......++.-.....-.+|+...   
T Consensus       407 ~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~---  483 (604)
T COG4178         407 TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAP---  483 (604)
T ss_pred             eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCC---
Confidence            4565  4568999999999999999999999999999989999876521 110000000001101111112222211   


Q ss_pred             cccchHHHHHHHHcCCCCccCCC------CCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCc
Q 036195           84 EALAFPCLERIYVHGCPSLRKLP------FSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTP  148 (183)
Q Consensus        84 ~~~~~~~l~vLe~l~L~~L~~~~------~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~  148 (183)
                      ...+.+..++|..++++++.++-      -..||+||||+      +..+|+|.   |..+-.|++.+..++..++.--+
T Consensus       484 ~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp  563 (604)
T COG4178         484 DFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELP  563 (604)
T ss_pred             CCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCC
Confidence            13345678899999998765542      24599999984      37899996   66899999999999988775333


Q ss_pred             ccccCCCCCCc
Q 036195          149 QTVISIPQPSY  159 (183)
Q Consensus       149 ~~~~~~~~~~~  159 (183)
                      +  ++++-++|
T Consensus       564 ~--~tvISV~H  572 (604)
T COG4178         564 D--ATVISVGH  572 (604)
T ss_pred             C--CEEEEecc
Confidence            2  33444444

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.44  E-value=7.1e-14  Score=130.18  Aligned_cols=148  Identities=16%  Similarity=0.140  Sum_probs=107.3

Q ss_pred             cccccce--ecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccc--
Q 036195            7 PHLRYIE--DDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSIC--   82 (183)
Q Consensus         7 ~~l~~l~--i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~--   82 (183)
                      +.|++++  |++|+.+||+||-|||||+||.+|.|-++..+|+|.+.|.                  ++|.||...++  
T Consensus       535 ~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs------------------iaYv~Q~pWI~ng  596 (1381)
T KOG0054|consen  535 PTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS------------------VAYVPQQPWIQNG  596 (1381)
T ss_pred             ccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe------------------EEEeccccHhhCC
Confidence            4677554  9999999999999999999999999999999999999885                  23334333222  


Q ss_pred             --------c-cccchHHHHHHHHcCCCC-ccCC----------CCCCCChhhhhee------cCchhhc---ccccccCc
Q 036195           83 --------H-EALAFPCLERIYVHGCPS-LRKL----------PFSLESGKRNGVL------IGEEEWW---NQLEWDDE  133 (183)
Q Consensus        83 --------~-~~~~~~~l~vLe~l~L~~-L~~~----------~~~~LSgGqk~~i------~~~~~w~---~~l~~~d~  133 (183)
                              . ........++++.+.|.+ +.-.          +.-.||||||++|      +.+.+-.   |||+=.|.
T Consensus       597 TvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDa  676 (1381)
T KOG0054|consen  597 TVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDA  676 (1381)
T ss_pred             cHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhH
Confidence                    1 122345778888877742 2222          3346999999854      6666664   89998886


Q ss_pred             -ccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          134 -ATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       134 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                       -.++-|+..+.  ..-....+++++|.++ .+..+|++|.++
T Consensus       677 hvg~~if~~ci~--~~L~~KT~ILVTHql~-~L~~ad~Iivl~  716 (1381)
T KOG0054|consen  677 HVGKHIFEECIR--GLLRGKTVILVTHQLQ-FLPHADQIIVLK  716 (1381)
T ss_pred             hhhHHHHHHHHH--hhhcCCEEEEEeCchh-hhhhCCEEEEec
Confidence             67777887772  2222467888999655 478899999886

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.44  E-value=5.9e-14  Score=133.64  Aligned_cols=83  Identities=12%  Similarity=0.010  Sum_probs=70.7

Q ss_pred             HHHHHHcCCCCc-cCCCCCCCChhhhhee------c---Cchhhc---ccccccCcccccccccceeecCcccccCCCCC
Q 036195           91 LERIYVHGCPSL-RKLPFSLESGKRNGVL------I---GEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQP  157 (183)
Q Consensus        91 l~vLe~l~L~~L-~~~~~~~LSgGqk~~i------~---~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  157 (183)
                      .++++.+++..+ .++++.+|||||+|++      .   .+|+.+   ||....|+..+..+..++..+..+ ..+|+++
T Consensus       790 l~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~-G~TVIiI  868 (1809)
T PRK00635        790 IHALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQ-GHTVVII  868 (1809)
T ss_pred             HHHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEE
Confidence            356788899887 7999999999999832      2   467776   899999999999999999888655 7889999


Q ss_pred             CceeeeeecccceEEEEe
Q 036195          158 SYTYEATIRPRYELICID  175 (183)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~  175 (183)
                      ||+++++ +.+|+++.++
T Consensus       869 sHdl~~i-~~aDrVi~L~  885 (1809)
T PRK00635        869 EHNMHVV-KVADYVLELG  885 (1809)
T ss_pred             eCCHHHH-HhCCEEEEEc
Confidence            9999988 8999999985

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.38  E-value=3e-13  Score=123.53  Aligned_cols=82  Identities=10%  Similarity=-0.054  Sum_probs=67.3

Q ss_pred             HHHHHHcCCCC-ccCCCCCCCChhhhhe------ecCch---hhc---ccccccCcccccccccceeecCcccccCCCCC
Q 036195           91 LERIYVHGCPS-LRKLPFSLESGKRNGV------LIGEE---EWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQP  157 (183)
Q Consensus        91 l~vLe~l~L~~-L~~~~~~~LSgGqk~~------i~~~~---~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  157 (183)
                      ++.++.+++.. ..++++.+|||||+|+      +..++   .+|   ||....|+..+..+..+|..+..+ ..+|+++
T Consensus       811 l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~-G~TVIii  889 (943)
T PRK00349        811 LQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDK-GNTVVVI  889 (943)
T ss_pred             HHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEE
Confidence            45677778876 4688999999999983      35555   565   899999999999999999887654 7899999


Q ss_pred             CceeeeeecccceEEEE
Q 036195          158 SYTYEATIRPRYELICI  174 (183)
Q Consensus       158 ~~~~~~~~~~~~~~~~~  174 (183)
                      +||++.+ +.+|++|.+
T Consensus       890 tH~~~~i-~~aD~ii~L  905 (943)
T PRK00349        890 EHNLDVI-KTADWIIDL  905 (943)
T ss_pred             ecCHHHH-HhCCEEEEe
Confidence            9999986 579999887

>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.36  E-value=3.6e-13  Score=104.39  Aligned_cols=79  Identities=11%  Similarity=0.032  Sum_probs=60.8

Q ss_pred             CccCCCCCCCChhhhhe--e--------cCchhhc---ccccccCcccccccccceeecCccc-ccCCCCCCceeeeeec
Q 036195          101 SLRKLPFSLESGKRNGV--L--------IGEEEWW---NQLEWDDEATKHVFSSKLIITTPQT-VISIPQPSYTYEATIR  166 (183)
Q Consensus       101 ~L~~~~~~~LSgGqk~~--i--------~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  166 (183)
                      .+.+..+.+||+||+|.  +        ..+|.++   ||+...|+..+..+...+.....+. ..+++++||+++.+++
T Consensus       118 ~~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~  197 (213)
T cd03277         118 QLQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLN  197 (213)
T ss_pred             CccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCc
Confidence            45677889999999982  2        2467776   8999999999999988887775542 3579999999999999


Q ss_pred             ccceEEEEeeCCC
Q 036195          167 PRYELICIDVDDT  179 (183)
Q Consensus       167 ~~~~~~~~~~~~~  179 (183)
                      .+|++.++-+.+.
T Consensus       198 ~~~~~~v~~l~~g  210 (213)
T cd03277         198 YHEKMTVLCVYNG  210 (213)
T ss_pred             ccCceEEEEEecC
Confidence            8886655555443

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.33  E-value=5.8e-14  Score=117.16  Aligned_cols=155  Identities=12%  Similarity=0.060  Sum_probs=102.4

Q ss_pred             ecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccc-ccc-------chh---------eeehhhhccCC
Q 036195           14 DDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKI-SVC-------SFI---------LIRRAYFFKLP   76 (183)
Q Consensus        14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~-~~~-------~~~---------~l~~~~lg~lp   76 (183)
                      ..+|.++||+||||-||||.+|+|+|-++|.=|+-  ++.+-+... ..+       .|.         ......+.++|
T Consensus        97 pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~--~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iP  174 (591)
T COG1245          97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRY--EDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIP  174 (591)
T ss_pred             CCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCC--CCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHH
Confidence            58999999999999999999999999999987753  221111100 000       010         00111111112


Q ss_pred             CCcc-----cccc-ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe--e----cCchhhc---ccccccCccccccccc
Q 036195           77 NLKS-----ICHE-ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV--L----IGEEEWW---NQLEWDDEATKHVFSS  141 (183)
Q Consensus        77 ~l~~-----l~~~-~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~--i----~~~~~w~---~~l~~~d~~~~~~~~~  141 (183)
                      ....     +... ...-...++++.+++.++.++.+++|||||.|+  |    ..+.+..   |+-+|.|...+.....
T Consensus       175 k~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar  254 (591)
T COG1245         175 KVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAAR  254 (591)
T ss_pred             HHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHH
Confidence            1100     0000 000134678999999999999999999998883  2    4455554   8899999999999998


Q ss_pred             ceeecCcccccCCCCCCceeeeeecccceE
Q 036195          142 KLIITTPQTVISIPQPSYTYEATIRPRYEL  171 (183)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (183)
                      .+..+... ...++++.|||-..--.+|-|
T Consensus       255 ~Irel~~~-~k~ViVVEHDLavLD~lsD~v  283 (591)
T COG1245         255 VIRELAED-GKYVIVVEHDLAVLDYLSDFV  283 (591)
T ss_pred             HHHHHhcc-CCeEEEEechHHHHHHhhhee
Confidence            88888876 788999999986544445543

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=99.32  E-value=8.4e-13  Score=110.16  Aligned_cols=150  Identities=15%  Similarity=0.118  Sum_probs=94.6

Q ss_pred             ccccccce--ecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc----
Q 036195            6 RPHLRYIE--DDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK----   79 (183)
Q Consensus         6 ~~~l~~l~--i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~----   79 (183)
                      +|.++.++  |.--..+||+||||.||||||+++.|-+.|+.|+.+-+-+                +.+|++.+..    
T Consensus       600 kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhr----------------L~iG~FdQh~~E~L  663 (807)
T KOG0066|consen  600 KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHR----------------LRIGWFDQHANEAL  663 (807)
T ss_pred             CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccce----------------eeeechhhhhHHhh
Confidence            45666444  7788899999999999999999999999999998753321                1112111100    


Q ss_pred             --------cccccc-cc-hHHHHHHHHcCCCCccC-CCCCCCChhhhhee------cCchhhc---ccccccCccccccc
Q 036195           80 --------SICHEA-LA-FPCLERIYVHGCPSLRK-LPFSLESGKRNGVL------IGEEEWW---NQLEWDDEATKHVF  139 (183)
Q Consensus        80 --------~l~~~~-~~-~~~l~vLe~l~L~~L~~-~~~~~LSgGqk~~i------~~~~~w~---~~l~~~d~~~~~~~  139 (183)
                              .+...+ .+ ......+-.+|+..-++ ..+..|||||+-++      .+.|+.+   +|.--.|.+.-+.+
T Consensus       664 ~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDAL  743 (807)
T KOG0066|consen  664 NGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDAL  743 (807)
T ss_pred             ccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHH
Confidence                    000000 01 12345566666654443 46789999999632      4566654   44444444333333


Q ss_pred             ccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          140 SSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      -.-|+    ++...++|+|||-+.+...--.+|++.
T Consensus       744 aEAIn----ey~GgVi~VsHDeRLi~eT~C~LwVvE  775 (807)
T KOG0066|consen  744 AEAIN----EYNGGVIMVSHDERLIVETDCNLWVVE  775 (807)
T ss_pred             HHHHH----hccCcEEEEecccceeeecCceEEEEc
Confidence            33222    667889999999999987777788764

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=99.31  E-value=5.6e-13  Score=112.52  Aligned_cols=162  Identities=14%  Similarity=0.016  Sum_probs=104.5

Q ss_pred             cccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccc-cc-cchheeehhhhccCCCCcccc
Q 036195            7 PHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKI-SV-CSFILIRRAYFFKLPNLKSIC   82 (183)
Q Consensus         7 ~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~-~~-~~~~~l~~~~lg~lp~l~~l~   82 (183)
                      ..+.  +++++.-+.++++|+||+||||+++++.+-..|.+|.+.+.++.--..- .. ..+.......+.+   ....+
T Consensus       378 ~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~ri~~f~Qhhvd~l~~~v~~vd~---~~~~~  454 (582)
T KOG0062|consen  378 QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRLRIKYFAQHHVDFLDKNVNAVDF---MEKSF  454 (582)
T ss_pred             hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecccceecchhHhhhhHHHHHhHHHHH---HHHhC
Confidence            4454  4457778889999999999999999999999999999877654210000 00 0000000000010   01112


Q ss_pred             ccccchHHHHHHHHcCCC-CccCCCCCCCChhhhhee------cCchhhc---ccccccCcccccccccceeecCccccc
Q 036195           83 HEALAFPCLERIYVHGCP-SLRKLPFSLESGKRNGVL------IGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVI  152 (183)
Q Consensus        83 ~~~~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~i------~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~  152 (183)
                      +.....++...+..+|++ ++...++.+||||||-++      ..+|.++   ||.---|.++...+..-+.    ....
T Consensus       455 pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~----~F~G  530 (582)
T KOG0062|consen  455 PGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALK----NFNG  530 (582)
T ss_pred             CCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHH----hcCC
Confidence            222345678889999996 678888999999999733      3345543   5555555544444433332    3357


Q ss_pred             CCCCCCceeeeeecccceEEEEe
Q 036195          153 SIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +|.|+|||.+++-..|+|+|+.+
T Consensus       531 GVv~VSHd~~fi~~~c~E~Wvve  553 (582)
T KOG0062|consen  531 GVVLVSHDEEFISSLCKELWVVE  553 (582)
T ss_pred             cEEEEECcHHHHhhcCceeEEEc
Confidence            89999999999999999999865

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.30  E-value=1.4e-12  Score=118.93  Aligned_cols=84  Identities=10%  Similarity=-0.039  Sum_probs=67.4

Q ss_pred             HHHHHHHcCCCCc-cCCCCCCCChhhhhee------cC---chhhc---ccccccCcccccccccceeecCcccccCCCC
Q 036195           90 CLERIYVHGCPSL-RKLPFSLESGKRNGVL------IG---EEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQ  156 (183)
Q Consensus        90 ~l~vLe~l~L~~L-~~~~~~~LSgGqk~~i------~~---~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~  156 (183)
                      .+++++.+++..+ .++++.+|||||+|++      ..   +|.++   ||....|+..+..+..++..+..+ ..++++
T Consensus       808 ~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~-G~TVIv  886 (924)
T TIGR00630       808 KLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQ-GNTVVV  886 (924)
T ss_pred             HHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEE
Confidence            3556777888763 6889999999998832      22   35665   889999999999999999887654 789999


Q ss_pred             CCceeeeeecccceEEEEe
Q 036195          157 PSYTYEATIRPRYELICID  175 (183)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~  175 (183)
                      ++||++.+ +.+|++|.+.
T Consensus       887 i~H~~~~i-~~aD~ii~Lg  904 (924)
T TIGR00630       887 IEHNLDVI-KTADYIIDLG  904 (924)
T ss_pred             EeCCHHHH-HhCCEEEEec
Confidence            99999976 6799998873

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=99.30  E-value=5.8e-13  Score=112.43  Aligned_cols=140  Identities=18%  Similarity=0.097  Sum_probs=83.4

Q ss_pred             cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEec-------CccccccccchheeehhhhccCCCCccccc
Q 036195           11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAV-------SLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus        11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~-------~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      ++++..|..+||+|+||+|||||||+|+.      |.|.....       ++...... .-.......+  +.+...+..
T Consensus       100 ~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~veqE~~g~~t~~~~~~-l~~D~~~~df--l~~e~~l~~  170 (582)
T KOG0062|consen  100 NLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVEQEVRGDDTEALQSV-LESDTERLDF--LAEEKELLA  170 (582)
T ss_pred             ceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCchhheeccchHHHhhh-hhccHHHHHH--HHhhhhhhc
Confidence            77899999999999999999999999998      33332211       11000000 0000000000  000000000


Q ss_pred             cccchHH-HHHHHHcCCC-CccCCCCCCCChhhhh------eecCchhhc---ccccccCcccccccccceeecCccccc
Q 036195           84 EALAFPC-LERIYVHGCP-SLRKLPFSLESGKRNG------VLIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVI  152 (183)
Q Consensus        84 ~~~~~~~-l~vLe~l~L~-~L~~~~~~~LSgGqk~------~i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~  152 (183)
                      .....++ ..++.-+|.. +...+|..+||||.|.      +++++|+.+   ||.---|..+..-++.+++...    +
T Consensus       171 ~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~----~  246 (582)
T KOG0062|consen  171 GLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWK----I  246 (582)
T ss_pred             cchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhCC----c
Confidence            0011222 2266677774 6788999999999764      468899886   6666667666666666665443    6


Q ss_pred             CCCCCCceeee
Q 036195          153 SIPQPSYTYEA  163 (183)
Q Consensus       153 ~~~~~~~~~~~  163 (183)
                      +++++|||=.+
T Consensus       247 T~liVSHDr~F  257 (582)
T KOG0062|consen  247 TSLIVSHDRNF  257 (582)
T ss_pred             eEEEEeccHHH
Confidence            78999999654

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.29  E-value=6.7e-13  Score=122.09  Aligned_cols=157  Identities=17%  Similarity=0.089  Sum_probs=101.0

Q ss_pred             cccccccce--ecCccEEEEEcCCCCcHHHHHHHHhcCCC--CCCcEEEEEecCcccc-----ccc--------cchhee
Q 036195            5 YRPHLRYIE--DDGVKIIGLYGVRGVGKSTLIKQLNDMFS--DMSHKFAIYAVSLQKK-----ISV--------CSFILI   67 (183)
Q Consensus         5 ~~~~l~~l~--i~~Ge~~~liGpNGaGKSTLl~~i~gl~~--p~~G~I~~~g~~~~~~-----~~~--------~~~~~l   67 (183)
                      ++.+|++++  ++||-.+||+|+|||||||||++|+|=..  -.+|+|.++|.+..+.     .++        ...++.
T Consensus       803 ~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVr  882 (1391)
T KOG0065|consen  803 TRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVR  882 (1391)
T ss_pred             ceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchH
Confidence            677889997  99999999999999999999999999753  3589999999865521     011        111222


Q ss_pred             ehhhhc-cCCCCccccccccchHHHHHHHHcCCCCccCCCCCC----CChhhhh------eecCchhhc----ccccccC
Q 036195           68 RRAYFF-KLPNLKSICHEALAFPCLERIYVHGCPSLRKLPFSL----ESGKRNG------VLIGEEEWW----NQLEWDD  132 (183)
Q Consensus        68 ~~~~lg-~lp~l~~l~~~~~~~~~l~vLe~l~L~~L~~~~~~~----LSgGqk~------~i~~~~~w~----~~l~~~d  132 (183)
                      +.+... ++.+-..+.......-+.++++.++|+++++.-+..    ||..||+      ++..+|..+    ||.++.|
T Consensus       883 ESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLD  962 (1391)
T KOG0065|consen  883 ESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLD  962 (1391)
T ss_pred             HHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCcc
Confidence            222211 111111111111112367899999998777765555    9999998      358888543    8899999


Q ss_pred             cccccccccceee---cCcccccCCCCCCcee
Q 036195          133 EATKHVFSSKLII---TTPQTVISIPQPSYTY  161 (183)
Q Consensus       133 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  161 (183)
                      ..+-..+-.+.+.   ..+.-+|+|=|||=++
T Consensus       963 sqaA~~i~~~lrkla~tGqtIlCTIHQPS~~i  994 (1391)
T KOG0065|consen  963 SQAAAIVMRFLRKLADTGQTILCTIHQPSIDI  994 (1391)
T ss_pred             HHHHHHHHHHHHHHHhcCCeEEEEecCCcHHH
Confidence            7554444444433   3444566666666554

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=99.29  E-value=6.5e-13  Score=110.00  Aligned_cols=165  Identities=19%  Similarity=0.121  Sum_probs=104.1

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcC--------CCCCCcEEEEEecCccccccccchheeehhhhc--
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDM--------FSDMSHKFAIYAVSLQKKISVCSFILIRRAYFF--   73 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl--------~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg--   73 (183)
                      ++++++  |++++|++++|+|+|||||||+|++|+|.        ++|++|.|.+--..+...    .+...+ ..++  
T Consensus       396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~----iPge~E-p~f~~~  470 (593)
T COG2401         396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSAL----IPGEYE-PEFGEV  470 (593)
T ss_pred             eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhc----cCcccc-cccCch
Confidence            455664  45899999999999999999999999997        479999998743322211    000000 0111  


Q ss_pred             -cCCCCccccccccchHHHHHHHHcCCCC--ccCCCCCCCChhhhh--e----ecCchhhc--cc-ccccCccccccccc
Q 036195           74 -KLPNLKSICHEALAFPCLERIYVHGCPS--LRKLPFSLESGKRNG--V----LIGEEEWW--NQ-LEWDDEATKHVFSS  141 (183)
Q Consensus        74 -~lp~l~~l~~~~~~~~~l~vLe~l~L~~--L~~~~~~~LSgGqk~--~----i~~~~~w~--~~-l~~~d~~~~~~~~~  141 (183)
                       .+.++.+...+  .....+++...|+.+  +..+++++||.||+.  .    ++..|..|  |. -.-.|+.+-..+..
T Consensus       471 tilehl~s~tGD--~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVAr  548 (593)
T COG2401         471 TILEHLRSKTGD--LNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVAR  548 (593)
T ss_pred             hHHHHHhhccCc--hhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHH
Confidence             00111111111  123577888888864  788899999999986  2    35555655  33 34445555555666


Q ss_pred             ceeecCcccccCCCCCCceeeeeecc-cceEEEEeeC
Q 036195          142 KLIITTPQTVISIPQPSYTYEATIRP-RYELICIDVD  177 (183)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  177 (183)
                      -|..+.-+..+..++++|+-+..-+. -|.++-+-.+
T Consensus       549 kiselaRe~giTlivvThrpEv~~AL~PD~li~vgYg  585 (593)
T COG2401         549 KISELAREAGITLIVVTHRPEVGNALRPDTLILVGYG  585 (593)
T ss_pred             HHHHHHHHhCCeEEEEecCHHHHhccCCceeEEeecc
Confidence            66666666677777788887776665 5666655433

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.29  E-value=1e-12  Score=100.33  Aligned_cols=169  Identities=12%  Similarity=0.045  Sum_probs=113.8

Q ss_pred             cccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCC----CCcEEEEEecCccccc-------------ccc--chh
Q 036195            7 PHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSD----MSHKFAIYAVSLQKKI-------------SVC--SFI   65 (183)
Q Consensus         7 ~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p----~~G~I~~~g~~~~~~~-------------~~~--~~~   65 (183)
                      ++++  |+++.+||+-|++|.+|||||-..|+|+|..+-    +.-...|++.++-+..             ..+  +.+
T Consensus        21 K~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~s  100 (330)
T COG4170          21 KAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQS  100 (330)
T ss_pred             EeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCchh
Confidence            4555  567999999999999999999999999999863    3445555554432210             000  000


Q ss_pred             eee------hhhhccCCCC---cccccccc--chHHHHHHHHcCCCC---ccCCCCCCCChhhhh------eecCchhhc
Q 036195           66 LIR------RAYFFKLPNL---KSICHEAL--AFPCLERIYVHGCPS---LRKLPFSLESGKRNG------VLIGEEEWW  125 (183)
Q Consensus        66 ~l~------~~~lg~lp~l---~~l~~~~~--~~~~l~vLe~l~L~~---L~~~~~~~LSgGqk~------~i~~~~~w~  125 (183)
                      .+.      ...+...|..   +.+.+.+.  ..+..+++..+|+.+   ....++.+|.-||-|      .++.+|.++
T Consensus       101 CLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~AnqPrLL  180 (330)
T COG4170         101 CLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRLL  180 (330)
T ss_pred             hcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehhhccCCceE
Confidence            000      0001111110   11111111  124567788888864   455678899988766      358888887


Q ss_pred             ---ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          126 ---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       126 ---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                         ||.--.|+.++..+..++..+.+....+|+.+|||+.++-.-||++-++=
T Consensus       181 IADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlY  233 (330)
T COG4170         181 IADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLY  233 (330)
T ss_pred             eccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEE
Confidence               77888889999999999998888889999999999999999999876553

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=99.28  E-value=7.7e-13  Score=101.52  Aligned_cols=37  Identities=19%  Similarity=0.141  Sum_probs=33.6

Q ss_pred             cccccccceecCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195            5 YRPHLRYIEDDGVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus         5 ~~~~l~~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++|+.++++..|++++|+||||||||||+|+|+|..
T Consensus        13 ~~~v~n~i~l~~g~~~~ltGpNg~GKSTllr~i~~~~   49 (199)
T cd03283          13 EKRVANDIDMEKKNGILITGSNMSGKSTFLRTIGVNV   49 (199)
T ss_pred             CCeecceEEEcCCcEEEEECCCCCChHHHHHHHHHHH
Confidence            4567789999999999999999999999999999865

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=99.26  E-value=6.7e-14  Score=107.50  Aligned_cols=137  Identities=9%  Similarity=-0.148  Sum_probs=78.5

Q ss_pred             cccccccceecCccEEEEEcCCCCcHHHHHHHHhcCC-CCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            5 YRPHLRYIEDDGVKIIGLYGVRGVGKSTLIKQLNDMF-SDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         5 ~~~~l~~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~-~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      ++.+.-++++.+|++++|+||||||||||+++|++.. .+..|..... .               ...+++..+..    
T Consensus        17 ~~~~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~-~---------------~~~i~~~dqi~----   76 (202)
T cd03243          17 ETFVPNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPA-E---------------SASIPLVDRIF----   76 (202)
T ss_pred             CceEeeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccc-c---------------ccccCCcCEEE----
Confidence            4456678899999999999999999999999999543 2333321110 0               01111111110    


Q ss_pred             cccchHHHHHHHHcCCCCccCCCCCCCChhhhh--ee---cCchhhc---ccccccCcccccccc-cceeecCcccccCC
Q 036195           84 EALAFPCLERIYVHGCPSLRKLPFSLESGKRNG--VL---IGEEEWW---NQLEWDDEATKHVFS-SKLIITTPQTVISI  154 (183)
Q Consensus        84 ~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~--~i---~~~~~w~---~~l~~~d~~~~~~~~-~~~~~~~~~~~~~~  154 (183)
                                 ..++.........+.++.++++  .+   ..+|..+   |+...-|+..+..+. .++..+.. ....+
T Consensus        77 -----------~~~~~~d~i~~~~s~~~~e~~~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~-~~~~v  144 (202)
T cd03243          77 -----------TRIGAEDSISDGRSTFMAELLELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLE-KGCRT  144 (202)
T ss_pred             -----------EEecCcccccCCceeHHHHHHHHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCeE
Confidence                       0111111223334555666665  22   3455554   778888886665553 33444433 36789


Q ss_pred             CCCCceeeeeecccceEEEE
Q 036195          155 PQPSYTYEATIRPRYELICI  174 (183)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~  174 (183)
                      +++||+.+... .++++..+
T Consensus       145 i~~tH~~~~~~-~~~~~~~l  163 (202)
T cd03243         145 LFATHFHELAD-LPEQVPGV  163 (202)
T ss_pred             EEECChHHHHH-HhhcCCCe
Confidence            99999976654 55554443

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=99.24  E-value=1.2e-12  Score=98.83  Aligned_cols=66  Identities=12%  Similarity=0.022  Sum_probs=53.2

Q ss_pred             CChhhhhe--e----c----Cchhhc---ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEee
Q 036195          110 ESGKRNGV--L----I----GEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICIDV  176 (183)
Q Consensus       110 LSgGqk~~--i----~----~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (183)
                      ||+||+++  +    .    ..|.++   |+....|+..+..+.+.+..+..+ .+.++++||+.+.+ +.+|++++|-.
T Consensus        95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~-g~tiIiiSH~~~~~-~~adrvi~i~~  172 (178)
T cd03239          95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKH-TSQFIVITLKKEMF-ENADKLIGVLF  172 (178)
T ss_pred             CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEECCHHHH-hhCCeEEEEEE
Confidence            99999882  1    1    467776   889999999999888888877554 67899999998865 68999999976


Q ss_pred             C
Q 036195          177 D  177 (183)
Q Consensus       177 ~  177 (183)
                      .
T Consensus       173 ~  173 (178)
T cd03239         173 V  173 (178)
T ss_pred             e
Confidence            3

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]

Probab=99.19  E-value=1.4e-11  Score=104.73  Aligned_cols=109  Identities=11%  Similarity=0.014  Sum_probs=64.3

Q ss_pred             cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc------
Q 036195           11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE------   84 (183)
Q Consensus        11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~------   84 (183)
                      +|.|++|-.+-|+||||||||+|+|+|.|+-+-..|...+--.+   .  .+..|.......|-+.. .-++++      
T Consensus       502 tf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~---~--mFYIPQRPYms~gtlRD-QIIYPdS~e~~~  575 (728)
T KOG0064|consen  502 TFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPN---N--IFYIPQRPYMSGGTLRD-QIIYPDSSEQMK  575 (728)
T ss_pred             eEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCc---c--eEeccCCCccCcCcccc-eeecCCcHHHHH
Confidence            45689999999999999999999999999998877766542110   0  11111111111111100 011221      


Q ss_pred             ---ccchHHHHHHHHcCCCCccCCCC---------CCCChhhhheecCchhhc
Q 036195           85 ---ALAFPCLERIYVHGCPSLRKLPF---------SLESGKRNGVLIGEEEWW  125 (183)
Q Consensus        85 ---~~~~~~l~vLe~l~L~~L~~~~~---------~~LSgGqk~~i~~~~~w~  125 (183)
                         ..+.+...++..+.+..+.++-.         +.||||+||++.+.+-+.
T Consensus       576 ~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~y  628 (728)
T KOG0064|consen  576 RKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFY  628 (728)
T ss_pred             hcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHh
Confidence               12234456667776655544432         569999999775555554

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=99.19  E-value=2.8e-11  Score=83.51  Aligned_cols=45  Identities=20%  Similarity=0.231  Sum_probs=38.8

Q ss_pred             cccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccc
Q 036195            7 PHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQK   57 (183)
Q Consensus         7 ~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~   57 (183)
                      ++|+  +|++++|++++|+||||||||||++++.      +|++.+.|.++..
T Consensus         3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~   49 (107)
T cd00820           3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVE   49 (107)
T ss_pred             eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHH
Confidence            4565  4568999999999999999999999986      8999999987653

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=99.17  E-value=2.7e-11  Score=102.69  Aligned_cols=51  Identities=20%  Similarity=0.124  Sum_probs=43.7

Q ss_pred             ccccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCc-EEEEEecCccc
Q 036195            5 YRPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSH-KFAIYAVSLQK   57 (183)
Q Consensus         5 ~~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G-~I~~~g~~~~~   57 (183)
                      .+++|++  +++++||+++|+|||||||||||+  +|+..|++| +|.++|.++..
T Consensus        18 l~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~   71 (504)
T TIGR03238        18 LERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFS   71 (504)
T ss_pred             HHHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCC
Confidence            3466764  568999999999999999999999  788888888 79999987653

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules

Probab=99.16  E-value=8.4e-12  Score=100.31  Aligned_cols=72  Identities=10%  Similarity=-0.086  Sum_probs=57.1

Q ss_pred             CCCCChhhhhe--e----cC----chhhc---ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEE
Q 036195          107 FSLESGKRNGV--L----IG----EEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELIC  173 (183)
Q Consensus       107 ~~~LSgGqk~~--i----~~----~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (183)
                      ..+||+||+++  +    ..    .|.++   ||...-|+..+..+...+.....  ...++++||+.+ +++.+|++++
T Consensus       168 ~~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~--~~tii~isH~~~-~~~~~d~~~~  244 (276)
T cd03241         168 AKIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR--SHQVLCITHLPQ-VAAMADNHFL  244 (276)
T ss_pred             hhhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEechHH-HHHhcCcEEE
Confidence            33599999882  2    12    78887   88999999999999888876643  478999999998 5789999999


Q ss_pred             EeeCCCCC
Q 036195          174 IDVDDTGH  181 (183)
Q Consensus       174 ~~~~~~~~  181 (183)
                      ++-..-|+
T Consensus       245 l~~~~~~~  252 (276)
T cd03241         245 VEKEVEGG  252 (276)
T ss_pred             EEEecCCC
Confidence            99776654

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]

Probab=99.15  E-value=2.1e-11  Score=104.42  Aligned_cols=166  Identities=14%  Similarity=0.026  Sum_probs=96.0

Q ss_pred             ccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc--
Q 036195            8 HLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH--   83 (183)
Q Consensus         8 ~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~--   83 (183)
                      +++  ||+|.+|+.+-|.||||||||+|+|+++||-+..+|++..-.....+  ..+..|..-...+|-+.+.- +++  
T Consensus       450 lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~--~lfflPQrPYmt~GTLRdQv-IYP~~  526 (659)
T KOG0060|consen  450 LIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPK--DLFFLPQRPYMTLGTLRDQV-IYPLK  526 (659)
T ss_pred             eeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCC--ceEEecCCCCccccchhhee-eccCc
Confidence            445  45699999999999999999999999999998899999764432111  01111222222222222111 111  


Q ss_pred             -------cccchHHHHHHHHcCCCCccCC-----------CCCCCChhhhheecCchhhc---------ccccccCcccc
Q 036195           84 -------EALAFPCLERIYVHGCPSLRKL-----------PFSLESGKRNGVLIGEEEWW---------NQLEWDDEATK  136 (183)
Q Consensus        84 -------~~~~~~~l~vLe~l~L~~L~~~-----------~~~~LSgGqk~~i~~~~~w~---------~~l~~~d~~~~  136 (183)
                             ...+...++.++++.+.++..+           -.+.||+||+|+++..+-+.         |-..-.+++..
T Consensus       527 ~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE  606 (659)
T KOG0060|consen  527 AEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVE  606 (659)
T ss_pred             cccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHH
Confidence                   1224467788888888654332           23569999999664444443         33444555666


Q ss_pred             cccccceeecCcccccC-----CCCCCceeeeee--cccceEEEEeeC
Q 036195          137 HVFSSKLIITTPQTVIS-----IPQPSYTYEATI--RPRYELICIDVD  177 (183)
Q Consensus       137 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~--~~~~~~~~~~~~  177 (183)
                      ..++..+...... .++     -+---||+..=|  +-+.++==||.+
T Consensus       607 ~~~Yr~~r~~giT-~iSVgHRkSL~kfHd~~L~~~g~g~w~~~~I~~q  653 (659)
T KOG0060|consen  607 GALYRKCREMGIT-FISVGHRKSLWKFHDYVLRMDGRGSWRFHQIDDQ  653 (659)
T ss_pred             HHHHHHHHHcCCe-EEEeccHHHHHhhhhEEEEecCCCceEEEEechh
Confidence            6777666554443 111     122246666555  334444444443

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=99.14  E-value=1.1e-11  Score=99.16  Aligned_cols=39  Identities=15%  Similarity=0.193  Sum_probs=36.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcc
Q 036195           18 KIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ   56 (183)
Q Consensus        18 e~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~   56 (183)
                      ..++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus       112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~  150 (270)
T TIGR02858       112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVG  150 (270)
T ss_pred             eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEee
Confidence            578999999999999999999999999999999998775

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.13  E-value=8e-12  Score=106.19  Aligned_cols=163  Identities=15%  Similarity=0.095  Sum_probs=101.5

Q ss_pred             cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEE--ecCccccc--c---ccchheeehhhhccCCC-Ccccc
Q 036195           11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIY--AVSLQKKI--S---VCSFILIRRAYFFKLPN-LKSIC   82 (183)
Q Consensus        11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~--g~~~~~~~--~---~~~~~~l~~~~lg~lp~-l~~l~   82 (183)
                      .|++.+|+.+||+|+|||||||+|++|+|-..|..-++-+.  .+++....  .   ...+..-....+.++.. +...+
T Consensus        95 ~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~~~~~~e~~rle~~~E~l~~~~  174 (614)
T KOG0927|consen   95 TLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVVMETDHERKRLEYLAEDLAQAC  174 (614)
T ss_pred             eEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHHHhhhhHHHHHHHHHHHHHHHhhc
Confidence            56789999999999999999999999999998877666442  22211100  0   00000000011111100 00000


Q ss_pred             c-----------------cccch--HHHHHHHHc-CCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCc
Q 036195           83 H-----------------EALAF--PCLERIYVH-GCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDE  133 (183)
Q Consensus        83 ~-----------------~~~~~--~~l~vLe~l-~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~  133 (183)
                      .                 +...+  ++..++.-+ ..+.+..++...+|||++++      ++-+|.++   ||.-.-|.
T Consensus       175 d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDl  254 (614)
T KOG0927|consen  175 DDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDL  254 (614)
T ss_pred             cchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCH
Confidence            0                 00011  122223322 33578888999999999873      47777775   88888898


Q ss_pred             ccccccccceeecCcccccCCCCCCceeeeeecccceEEEEee
Q 036195          134 ATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICIDV  176 (183)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (183)
                      ++..-++.++....   ...+.++||+-.+.=..|-.+||++-
T Consensus       255 eA~~wLee~L~k~d---~~~lVi~sh~QDfln~vCT~Ii~l~~  294 (614)
T KOG0927|consen  255 EAIVWLEEYLAKYD---RIILVIVSHSQDFLNGVCTNIIHLDN  294 (614)
T ss_pred             HHHHHHHHHHHhcc---CceEEEEecchhhhhhHhhhhheecc
Confidence            88888887765322   22677889999888899999999874

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=99.06  E-value=1.1e-11  Score=92.10  Aligned_cols=129  Identities=11%  Similarity=-0.008  Sum_probs=84.0

Q ss_pred             cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhcc-CCCCccccccccchH
Q 036195           11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFK-LPNLKSICHEALAFP   89 (183)
Q Consensus        11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~-lp~l~~l~~~~~~~~   89 (183)
                      ++.+.++.+..|+|||||||||+++.+....-...|.+..... .+               .+. .+...      ..+ 
T Consensus        15 ~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~-~~---------------~g~~~~~~~------~~~-   71 (162)
T cd03227          15 DVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSG-VK---------------AGCIVAAVS------AEL-   71 (162)
T ss_pred             EEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCc-cc---------------CCCcceeeE------EEE-
Confidence            3344556699999999999999999988887666665544211 10               000 00000      000 


Q ss_pred             HHHHHHHcCCCCccCCCCCCCChhhhhe--e----c----Cchhhc---ccccccCcccccccccceeecCcccccCCCC
Q 036195           90 CLERIYVHGCPSLRKLPFSLESGKRNGV--L----I----GEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQ  156 (183)
Q Consensus        90 ~l~vLe~l~L~~L~~~~~~~LSgGqk~~--i----~----~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~  156 (183)
                                    -.....+|+||+++  +    .    .+|.++   |+...-|+..+..+...+.....+ .+.+++
T Consensus        72 --------------i~~~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~-~~~vii  136 (162)
T cd03227          72 --------------IFTRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK-GAQVIV  136 (162)
T ss_pred             --------------ehheeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEE
Confidence                          00012299998872  1    2    156665   778888988888887777655445 678999


Q ss_pred             CCceeeeeecccceEEEEeeCC
Q 036195          157 PSYTYEATIRPRYELICIDVDD  178 (183)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~  178 (183)
                      +||+.+.+. .+|+++.+..-.
T Consensus       137 ~TH~~~~~~-~~d~~~~l~~~~  157 (162)
T cd03227         137 ITHLPELAE-LADKLIHIKKVI  157 (162)
T ss_pred             EcCCHHHHH-hhhhEEEEEEEe
Confidence            999999875 589999887643

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]

Probab=99.01  E-value=1.5e-10  Score=88.29  Aligned_cols=154  Identities=15%  Similarity=0.004  Sum_probs=90.8

Q ss_pred             cccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhh---------ccC
Q 036195            7 PHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYF---------FKL   75 (183)
Q Consensus         7 ~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~l---------g~l   75 (183)
                      |++.  +++++.|...-++|.||||||||||+++|-.-.-.|.|.+.|.+.-..........+.++.-         +.+
T Consensus        28 P~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~agev  107 (291)
T KOG2355|consen   28 PIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAGEV  107 (291)
T ss_pred             ceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCceeEecccccccccccccc
Confidence            5554  44589999999999999999999999999877777999999876432111100011110000         001


Q ss_pred             CCCc------cccc--cccchHHHHHHHHcCCCCccCCCCCCCChhhhhee---cCchhh-----ccccccc-Ccccccc
Q 036195           76 PNLK------SICH--EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGVL---IGEEEW-----WNQLEWD-DEATKHV  138 (183)
Q Consensus        76 p~l~------~l~~--~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~i---~~~~~w-----~~~l~~~-d~~~~~~  138 (183)
                      |-..      .++.  ....++-..+++.+++.-  .-+.+.+|-||+|++   +|-..=     ++++.-+ |.-++..
T Consensus       108 plq~D~sae~mifgV~g~dp~Rre~LI~iLDIdl--~WRmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARad  185 (291)
T KOG2355|consen  108 PLQGDISAEHMIFGVGGDDPERREKLIDILDIDL--RWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARAD  185 (291)
T ss_pred             cccccccHHHHHhhccCCChhHhhhhhhheeccc--eEEEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHH
Confidence            1000      0110  001123455566666542  345678999999954   221111     2444332 4566777


Q ss_pred             cccceeecCcccccCCCCCCceee
Q 036195          139 FSSKLIITTPQTVISIPQPSYTYE  162 (183)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~  162 (183)
                      +..+++.--.|..++|.-.+|=+.
T Consensus       186 LLeFlkeEce~RgatIVYATHIFD  209 (291)
T KOG2355|consen  186 LLEFLKEECEQRGATIVYATHIFD  209 (291)
T ss_pred             HHHHHHHHHhhcCcEEEEEeeecc
Confidence            777777777788888887777654

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=99.01  E-value=2.7e-10  Score=86.40  Aligned_cols=42  Identities=24%  Similarity=0.265  Sum_probs=38.6

Q ss_pred             ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEec
Q 036195           12 IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAV   53 (183)
Q Consensus        12 l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~   53 (183)
                      +.+++|+.++|+||||||||||+++|+++++|+.|.|.+.+.
T Consensus        20 ~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~   61 (186)
T cd01130          20 LAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDT   61 (186)
T ss_pred             HHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCc
Confidence            348899999999999999999999999999999999998653

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]

Probab=99.00  E-value=4.5e-11  Score=99.45  Aligned_cols=152  Identities=11%  Similarity=0.032  Sum_probs=95.8

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHhcCCCCCCc-EE-----EEEecCccccccccchheeehhhhccCCCCccccccccchH
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQLNDMFSDMSH-KF-----AIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHEALAFP   89 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G-~I-----~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~~~~~~   89 (183)
                      .-|++..+|.||.||||++++++|.++|+.| +|     .+.-+.+..+     +....+..+..  ..+.-  .....-
T Consensus       366 dSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~lnVSykpqkispK-----~~~tvR~ll~~--kIr~a--y~~pqF  436 (592)
T KOG0063|consen  366 DSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLNVSYKPQKISPK-----REGTVRQLLHT--KIRDA--YMHPQF  436 (592)
T ss_pred             CceeEEEEccCCcchhHHHHHHhcCCCCCccCcccccceeccccccCcc-----ccchHHHHHHH--HhHhh--hcCHHH
Confidence            3467889999999999999999999999886 22     2222211110     00000000000  00000  011112


Q ss_pred             HHHHHHHcCCCCccCCCCCCCChhhhhee-----cCchhhc----ccccccCcccccccccceeecCcccccCCCCCCce
Q 036195           90 CLERIYVHGCPSLRKLPFSLESGKRNGVL-----IGEEEWW----NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYT  160 (183)
Q Consensus        90 ~l~vLe~l~L~~L~~~~~~~LSgGqk~~i-----~~~~~w~----~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (183)
                      .-++++-+.++.+.++.+..||||+.|++     .|.|.=.    |+-...|-+.+......+.-.....--+-.++.||
T Consensus       437 ~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhd  516 (592)
T KOG0063|consen  437 VNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHD  516 (592)
T ss_pred             HHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhH
Confidence            35677888888999999999999998843     5555432    56666666666555555554444555667888999


Q ss_pred             eeeeecccceEEEEee
Q 036195          161 YEATIRPRYELICIDV  176 (183)
Q Consensus       161 ~~~~~~~~~~~~~~~~  176 (183)
                      +=+.-=.+||||..|-
T Consensus       517 fImaTYladrvivf~G  532 (592)
T KOG0063|consen  517 FIMATYLADRVIVFEG  532 (592)
T ss_pred             HHHHHhhcceeEEEec
Confidence            8777778999999874

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=98.99  E-value=1e-11  Score=96.81  Aligned_cols=133  Identities=12%  Similarity=-0.084  Sum_probs=77.0

Q ss_pred             ccccccce--ecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhc-cCCCCcccc
Q 036195            6 RPHLRYIE--DDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFF-KLPNLKSIC   82 (183)
Q Consensus         6 ~~~l~~l~--i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg-~lp~l~~l~   82 (183)
                      +.+..+++  ..+++++.|.||||+||||++++++-.        .+                  ...++ ++|..... 
T Consensus        17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~--------~~------------------la~~g~~vpa~~~~-   69 (222)
T cd03285          17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI--------VL------------------MAQIGCFVPCDSAD-   69 (222)
T ss_pred             CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH--------HH------------------HHHhCCCcCcccEE-
Confidence            34555555  468999999999999999999999821        00                  01112 22211100 


Q ss_pred             ccccchHHHHHHHHcCCCCccCCCCCCCChhhhh-----e-e--cCchhhc---cc---ccccCcccccccccceeecCc
Q 036195           83 HEALAFPCLERIYVHGCPSLRKLPFSLESGKRNG-----V-L--IGEEEWW---NQ---LEWDDEATKHVFSSKLIITTP  148 (183)
Q Consensus        83 ~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~-----~-i--~~~~~w~---~~---l~~~d~~~~~~~~~~~~~~~~  148 (183)
                          .....+++..+++.+..   ...+|.|+++     . +  ..++..+   |+   ....|+......  ++..+..
T Consensus        70 ----~~~~~~il~~~~l~d~~---~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~--il~~l~~  140 (222)
T cd03285          70 ----IPIVDCILARVGASDSQ---LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWA--IAEYIAT  140 (222)
T ss_pred             ----EeccceeEeeeccccch---hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHH--HHHHHHh
Confidence                11123344455555333   4556666543     1 2  4567765   56   566776555322  2222222


Q ss_pred             ccccCCCCCCceeeeeecccceEEEEe
Q 036195          149 QTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+.++++|| ++++.+.||++++++
T Consensus       141 ~~~~~vlisTH-~~el~~~~~~~~~i~  166 (222)
T cd03285         141 QIKCFCLFATH-FHELTALADEVPNVK  166 (222)
T ss_pred             cCCCeEEEEec-hHHHHHHhhcCCCeE
Confidence            33577899999 588889999888764

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=98.91  E-value=4.7e-11  Score=91.94  Aligned_cols=129  Identities=10%  Similarity=-0.112  Sum_probs=73.3

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccC-CCCcccc
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKL-PNLKSIC   82 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~l-p~l~~l~   82 (183)
                      +.+..++  ++.+|++++|+||||+||||++++++++.--                          ..+|.. |...   
T Consensus        16 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~l--------------------------a~~G~~vpa~~---   66 (204)
T cd03282          16 NFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIM--------------------------AQIGCFVPAEY---   66 (204)
T ss_pred             cEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHH--------------------------HHcCCCcchhh---
Confidence            4555555  4678899999999999999999999988410                          001100 1000   


Q ss_pred             ccccchHHHHHHHHcCCCCccCCCCCCCChhhhh--e---ecCchhhc---ccccccCccc-ccccccceeecCcccccC
Q 036195           83 HEALAFPCLERIYVHGCPSLRKLPFSLESGKRNG--V---LIGEEEWW---NQLEWDDEAT-KHVFSSKLIITTPQTVIS  153 (183)
Q Consensus        83 ~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~--~---i~~~~~w~---~~l~~~d~~~-~~~~~~~~~~~~~~~~~~  153 (183)
                      ..  .....+++..++..+-.....+++|.|+++  .   .+.++..+   |+...-|+.. .......+..+... ...
T Consensus        67 ~~--l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~-~~~  143 (204)
T cd03282          67 AT--LPIFNRLLSRLSNDDSMERNLSTFASEMSETAYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKK-EST  143 (204)
T ss_pred             cC--ccChhheeEecCCccccchhhhHHHHHHHHHHHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhc-CCE
Confidence            00  001123334444444455667788888877  2   24455553   4444444422 22222333333333 778


Q ss_pred             CCCCCceeeeeec
Q 036195          154 IPQPSYTYEATIR  166 (183)
Q Consensus       154 ~~~~~~~~~~~~~  166 (183)
                      ++++||+.+.+-.
T Consensus       144 ~i~~TH~~~l~~~  156 (204)
T cd03282         144 VFFATHFRDIAAI  156 (204)
T ss_pred             EEEECChHHHHHH
Confidence            9999999887654

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=98.84  E-value=5.1e-09  Score=81.95  Aligned_cols=35  Identities=31%  Similarity=0.420  Sum_probs=32.0

Q ss_pred             cCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEE
Q 036195           15 DGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFA   49 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~   49 (183)
                      .+..++||.||||||||||++.|++++++.+|.+.
T Consensus        31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~   65 (229)
T PRK09270         31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPA   65 (229)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCce
Confidence            56779999999999999999999999999999843

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=98.83  E-value=2.9e-11  Score=91.71  Aligned_cols=119  Identities=11%  Similarity=-0.090  Sum_probs=71.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHh-cCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccccccchHHHHHHHHc
Q 036195           19 IIGLYGVRGVGKSTLIKQLN-DMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHEALAFPCLERIYVH   97 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~-gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~~~~~~~l~vLe~l   97 (183)
                      ++.|.||||+||||++|.++ ..+-+..|.......                ..++++               .+++..+
T Consensus         1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~----------------~~~~~~---------------d~il~~~   49 (185)
T smart00534        1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAES----------------AELPVF---------------DRIFTRI   49 (185)
T ss_pred             CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehh----------------eEeccc---------------ceEEEEe
Confidence            36799999999999999998 333344443221110                111111               1112233


Q ss_pred             CCCCccCCCCCCCChhhhh--ee---cCchhhc---ccccccCcccccc-cccceeecCcccccCCCCCCceeeeeeccc
Q 036195           98 GCPSLRKLPFSLESGKRNG--VL---IGEEEWW---NQLEWDDEATKHV-FSSKLIITTPQTVISIPQPSYTYEATIRPR  168 (183)
Q Consensus        98 ~L~~L~~~~~~~LSgGqk~--~i---~~~~~w~---~~l~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (183)
                      ++.+....+.+++|+++++  .+   +.+|..|   |+...-|+..... +..++..+..+..+.++++||+.+ ..+.+
T Consensus        50 ~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~-l~~~~  128 (185)
T smart00534       50 GASDSLAQGLSTFMVEMKETANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHE-LTKLA  128 (185)
T ss_pred             CCCCchhccccHHHHHHHHHHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHH-HHHHh
Confidence            3445556778889998887  22   2366655   7788888764444 344555444434678999999986 44555


Q ss_pred             c
Q 036195          169 Y  169 (183)
Q Consensus       169 ~  169 (183)
                      +
T Consensus       129 ~  129 (185)
T smart00534      129 D  129 (185)
T ss_pred             h
Confidence            5

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=98.78  E-value=1.5e-09  Score=90.95  Aligned_cols=163  Identities=14%  Similarity=0.062  Sum_probs=92.7

Q ss_pred             ccceecCccEEEEEcCCCCcHHHHHHHHhcCC--CCCCcEEEEEecCcccccc-----ccc-----hheee--hhhhccC
Q 036195           10 RYIEDDGVKIIGLYGVRGVGKSTLIKQLNDMF--SDMSHKFAIYAVSLQKKIS-----VCS-----FILIR--RAYFFKL   75 (183)
Q Consensus        10 ~~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~--~p~~G~I~~~g~~~~~~~~-----~~~-----~~~l~--~~~lg~l   75 (183)
                      .+|.|-.|..+|++||||-||||||+.|+.--  -|..=.|.+-.+.+.....     ...     ...++  ....+.+
T Consensus       283 A~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~  362 (807)
T KOG0066|consen  283 ASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQI  362 (807)
T ss_pred             cceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            37788999999999999999999999998642  2333334443333221000     000     00000  0000000


Q ss_pred             ---------------CCCccccccccchHHHHHHHHcCCC-CccCCCCCCCChhhhhee------cCchhhc---ccccc
Q 036195           76 ---------------PNLKSICHEALAFPCLERIYVHGCP-SLRKLPFSLESGKRNGVL------IGEEEWW---NQLEW  130 (183)
Q Consensus        76 ---------------p~l~~l~~~~~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~i------~~~~~w~---~~l~~  130 (183)
                                     ..++.+-......+...++.-+|.+ .+.++|...+|||.+.+|      +.+|-++   +|.--
T Consensus       363 e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNH  442 (807)
T KOG0066|consen  363 EEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNH  442 (807)
T ss_pred             HcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeeehhHHHHHhcCceeeeecCCccc
Confidence                           0011111122233455667777765 578899999999988643      4444443   33333


Q ss_pred             cCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEee
Q 036195          131 DDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICIDV  176 (183)
Q Consensus       131 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (183)
                      .|-++..-+..++...    -.+.+|+|||--+.-..|..+|-+|-
T Consensus       443 LDLNAVIWLdNYLQgW----kKTLLIVSHDQgFLD~VCtdIIHLD~  484 (807)
T KOG0066|consen  443 LDLNAVIWLDNYLQGW----KKTLLIVSHDQGFLDSVCTDIIHLDN  484 (807)
T ss_pred             cccceeeehhhHHhhh----hheeEEEecccchHHHHHHHHhhhhh
Confidence            3334443344444433    34578899999999999999998874

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=98.75  E-value=8.8e-09  Score=64.02  Aligned_cols=36  Identities=25%  Similarity=0.343  Sum_probs=30.2

Q ss_pred             ccceecC-ccEEEEEcCCCCcHHHHHHHHhcCCCCCC
Q 036195           10 RYIEDDG-VKIIGLYGVRGVGKSTLIKQLNDMFSDMS   45 (183)
Q Consensus        10 ~~l~i~~-Ge~~~liGpNGaGKSTLl~~i~gl~~p~~   45 (183)
                      +.+++.+ |+++.|.|||||||||++.+|.-++.|..
T Consensus        15 ~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~~   51 (62)
T PF13555_consen   15 ETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGNT   51 (62)
T ss_pred             eEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence            4566765 57999999999999999999988877655

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=98.71  E-value=1.3e-08  Score=76.70  Aligned_cols=36  Identities=31%  Similarity=0.305  Sum_probs=31.9

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCc
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSL   55 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~   55 (183)
                      +||+++|+|+|||||||++++|++++.+    +.++|.++
T Consensus         2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~   37 (176)
T PRK09825          2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDL   37 (176)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCccc
Confidence            6999999999999999999999999887    56777654

>PRK06002 fliI flagellum-specific ATP synthase; Validated

Probab=98.71  E-value=1.5e-08  Score=86.06  Aligned_cols=46  Identities=24%  Similarity=0.213  Sum_probs=40.5

Q ss_pred             cccccc-eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEe
Q 036195            7 PHLRYI-EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYA   52 (183)
Q Consensus         7 ~~l~~l-~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g   52 (183)
                      ++++.+ .+.+|++++|+||||+|||||+++|+++.+|+.|.|.+.|
T Consensus       154 ~aID~L~~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liG  200 (450)
T PRK06002        154 RVIDIFTPLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVG  200 (450)
T ss_pred             EEeeeeceecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecc
Confidence            345544 4999999999999999999999999999999999888865

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=98.67  E-value=2.5e-08  Score=75.58  Aligned_cols=37  Identities=24%  Similarity=0.324  Sum_probs=30.8

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcc
Q 036195           17 VKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ   56 (183)
Q Consensus        17 Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~   56 (183)
                      |++++|+||||||||||+++|++...|   .+.+.+..+.
T Consensus         2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~   38 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYIT   38 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECC
Confidence            789999999999999999999999876   4666555443

>TIGR00235 udk uridine kinase

Probab=98.67  E-value=1.7e-08  Score=77.77  Aligned_cols=29  Identities=28%  Similarity=0.460  Sum_probs=27.4

Q ss_pred             cCccEEEEEcCCCCcHHHHHHHHhcCCCC
Q 036195           15 DGVKIIGLYGVRGVGKSTLIKQLNDMFSD   43 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~~p   43 (183)
                      ++|+++||+||||||||||++.|++++++
T Consensus         4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~   32 (207)
T TIGR00235         4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK   32 (207)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            68999999999999999999999999876

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=98.65  E-value=2e-08  Score=96.72  Aligned_cols=85  Identities=13%  Similarity=-0.053  Sum_probs=63.5

Q ss_pred             HHHHHHHcCCCCc-cCCCCCCCChhhhhee-----cCc----hhhc---ccccccCcccccccccceeecCcccccCCCC
Q 036195           90 CLERIYVHGCPSL-RKLPFSLESGKRNGVL-----IGE----EEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQ  156 (183)
Q Consensus        90 ~l~vLe~l~L~~L-~~~~~~~LSgGqk~~i-----~~~----~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~  156 (183)
                      .++.|..+||.-+ ..+|..+|||||.|+|     .+.    +..+   ||..+-++.-...+...|..+... .-++++
T Consensus      1679 ~L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~-g~tviv 1757 (1809)
T PRK00635       1679 PLQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSL-GHSVIY 1757 (1809)
T ss_pred             HHHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCeEEE
Confidence            4667888898866 6789999999998843     222    2233   778888887788888888877755 899999


Q ss_pred             CCceeeeeecccceEEEEeeCC
Q 036195          157 PSYTYEATIRPRYELICIDVDD  178 (183)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~  178 (183)
                      ++||++.+-+ +|.+|  |+-.
T Consensus      1758 ieH~~~~i~~-aD~ii--dlgp 1776 (1809)
T PRK00635       1758 IDHDPALLKQ-ADYLI--EMGP 1776 (1809)
T ss_pred             EeCCHHHHHh-CCEEE--EcCC
Confidence            9999986555 99765  5543

>PRK00300 gmk guanylate kinase; Provisional

Probab=98.64  E-value=2.3e-08  Score=76.56  Aligned_cols=28  Identities=39%  Similarity=0.391  Sum_probs=26.4

Q ss_pred             cCccEEEEEcCCCCcHHHHHHHHhcCCC
Q 036195           15 DGVKIIGLYGVRGVGKSTLIKQLNDMFS   42 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~~   42 (183)
                      ++|++++|+||+|||||||++.|++.++
T Consensus         3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~   30 (205)
T PRK00300          3 RRGLLIVLSGPSGAGKSTLVKALLERDP   30 (205)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            5899999999999999999999999974

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=98.64  E-value=2.4e-08  Score=80.74  Aligned_cols=40  Identities=28%  Similarity=0.313  Sum_probs=34.0

Q ss_pred             cCccEEEEEcCCCCcHHHHHHHHhcCCC--CCCcEEEEEecC
Q 036195           15 DGVKIIGLYGVRGVGKSTLIKQLNDMFS--DMSHKFAIYAVS   54 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~~--p~~G~I~~~g~~   54 (183)
                      +.-.++||.||||||||||+++|.+++.  |++|.|.+-+.+
T Consensus        60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D  101 (290)
T TIGR00554        60 KIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTD  101 (290)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecc
Confidence            3446999999999999999999999997  788988775544

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>TIGR01069 mutS2 MutS2 family protein

Probab=98.61  E-value=2.2e-09  Score=97.04  Aligned_cols=121  Identities=12%  Similarity=0.007  Sum_probs=73.2

Q ss_pred             cceecCc-cEEEEEcCCCCcHHHHHHHHhcC-CCCCCc-EEEEEecCccccccccchheeehhhhccCCCCccccccccc
Q 036195           11 YIEDDGV-KIIGLYGVRGVGKSTLIKQLNDM-FSDMSH-KFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHEALA   87 (183)
Q Consensus        11 ~l~i~~G-e~~~liGpNGaGKSTLl~~i~gl-~~p~~G-~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~~~~   87 (183)
                      ++++.++ ++++|+||||+|||||||+|+|. +.+..| .|.....                ..++++.+..   ..   
T Consensus       315 di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~----------------~~~~~~d~i~---~~---  372 (771)
T TIGR01069       315 TLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEH----------------SEIPYFEEIF---AD---  372 (771)
T ss_pred             eeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCcc----------------ccccchhhee---ee---
Confidence            6667777 89999999999999999999998 556666 2211100                0111111111   00   


Q ss_pred             hHHHHHHHHcCCCCccCCCCCCCChhhhh--ee---cCchhhc---ccccccCccccccc-ccceeecCcccccCCCCCC
Q 036195           88 FPCLERIYVHGCPSLRKLPFSLESGKRNG--VL---IGEEEWW---NQLEWDDEATKHVF-SSKLIITTPQTVISIPQPS  158 (183)
Q Consensus        88 ~~~l~vLe~l~L~~L~~~~~~~LSgGqk~--~i---~~~~~w~---~~l~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~  158 (183)
                               ++...-....++++|+++++  .+   +.++..+   |+...-|+.....+ ..++..+.. ..+.++++|
T Consensus       373 ---------i~~~~si~~~LStfS~~m~~~~~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~-~g~~viitT  442 (771)
T TIGR01069       373 ---------IGDEQSIEQNLSTFSGHMKNISAILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLLK-QNAQVLITT  442 (771)
T ss_pred             ---------cChHhHHhhhhhHHHHHHHHHHHHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEC
Confidence                     01011122346778898887  33   2345554   66778887777666 345555443 367889999


Q ss_pred             ceeee
Q 036195          159 YTYEA  163 (183)
Q Consensus       159 ~~~~~  163 (183)
                      |+.+.
T Consensus       443 H~~eL  447 (771)
T TIGR01069       443 HYKEL  447 (771)
T ss_pred             ChHHH
Confidence            98765

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=98.60  E-value=6.5e-08  Score=82.32  Aligned_cols=49  Identities=20%  Similarity=0.210  Sum_probs=42.9

Q ss_pred             cccccc-eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCc
Q 036195            7 PHLRYI-EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSL   55 (183)
Q Consensus         7 ~~l~~l-~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~   55 (183)
                      ++++.+ .+.+|++++|+|+||+|||||+++|+++.+|+.|.|.+.|++-
T Consensus       147 ~vid~l~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg  196 (438)
T PRK07721        147 RAIDSLLTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERG  196 (438)
T ss_pred             hhhheeeeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCC
Confidence            345544 6899999999999999999999999999999999999977654

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=98.58  E-value=1.3e-07  Score=72.26  Aligned_cols=33  Identities=30%  Similarity=0.485  Sum_probs=26.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEec
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAV   53 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~   53 (183)
                      ++||+||||||||||.+.|++++  ..|.+.+.+.
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~   33 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQ   33 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEe
Confidence            58999999999999999999998  3455555444

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=98.57  E-value=5.4e-08  Score=79.47  Aligned_cols=41  Identities=27%  Similarity=0.272  Sum_probs=37.3

Q ss_pred             ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEe
Q 036195           12 IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYA   52 (183)
Q Consensus        12 l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g   52 (183)
                      +.+..|+.++|+||+|||||||+++|+++++|..|.+.+.+
T Consensus       139 ~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied  179 (308)
T TIGR02788       139 LAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIED  179 (308)
T ss_pred             HHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcC
Confidence            35788999999999999999999999999999999888864

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein

Probab=98.56  E-value=1.1e-07  Score=77.88  Aligned_cols=47  Identities=19%  Similarity=0.235  Sum_probs=40.7

Q ss_pred             ccccc-eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecC
Q 036195            8 HLRYI-EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVS   54 (183)
Q Consensus         8 ~l~~l-~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~   54 (183)
                      +++.+ .+.+|++++|+|+||+|||||+++|++...|+.|.+..-|++
T Consensus        59 aiD~l~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer  106 (326)
T cd01136          59 AIDGLLTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGER  106 (326)
T ss_pred             EEeeeeEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecC
Confidence            45444 589999999999999999999999999999999888776643

This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.54  E-value=6.5e-08  Score=79.28  Aligned_cols=42  Identities=29%  Similarity=0.326  Sum_probs=38.4

Q ss_pred             cCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcc
Q 036195           15 DGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ   56 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~   56 (183)
                      .+|++++++||||+||||++..|++.+.+..++|.+.+.|..
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~  153 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTF  153 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCcc
Confidence            478999999999999999999999999998899999887764

>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI

Probab=98.53  E-value=1.1e-07  Score=80.35  Aligned_cols=44  Identities=23%  Similarity=0.264  Sum_probs=40.5

Q ss_pred             cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecC
Q 036195           11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVS   54 (183)
Q Consensus        11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~   54 (183)
                      ++.+.+|+.++|+|+||+|||||+++|++..+|+.|.|...|+.
T Consensus       134 ~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~~~gvi~~iGer  177 (418)
T TIGR03498       134 FLPLCRGQRLGIFAGSGVGKSTLLSMLARNTDADVVVIALVGER  177 (418)
T ss_pred             eccccCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEeee
Confidence            56799999999999999999999999999999999988887764

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>PRK07196 fliI flagellum-specific ATP synthase; Validated

Probab=98.51  E-value=1.2e-07  Score=80.48  Aligned_cols=41  Identities=20%  Similarity=0.182  Sum_probs=35.0

Q ss_pred             ccccc-eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEE
Q 036195            8 HLRYI-EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKF   48 (183)
Q Consensus         8 ~l~~l-~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I   48 (183)
                      +++.+ ++.+|++++|+|+||+|||||+++|+|+.+|+.+.+
T Consensus       145 aID~ll~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vi  186 (434)
T PRK07196        145 AINGLLTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVV  186 (434)
T ss_pred             eccceEeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEE
Confidence            44444 689999999999999999999999999998886433

>PRK08149 ATP synthase SpaL; Validated

Probab=98.48  E-value=1.3e-07  Score=80.01  Aligned_cols=50  Identities=12%  Similarity=0.137  Sum_probs=42.2

Q ss_pred             cccccc-eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCC---cEEEEEecCcc
Q 036195            7 PHLRYI-EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMS---HKFAIYAVSLQ   56 (183)
Q Consensus         7 ~~l~~l-~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~---G~I~~~g~~~~   56 (183)
                      ++++.+ .+.+||+++|+|+||+|||||+++|++...++.   |.|...++++.
T Consensus       140 ~aid~ll~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~  193 (428)
T PRK08149        140 RAIDGLLTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVT  193 (428)
T ss_pred             EEEeeeeeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHH
Confidence            345544 589999999999999999999999999998887   77777777654

>PRK07594 type III secretion system ATPase SsaN; Validated

Probab=98.47  E-value=1.6e-07  Score=79.58  Aligned_cols=48  Identities=21%  Similarity=0.295  Sum_probs=41.7

Q ss_pred             cccccc-eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecC
Q 036195            7 PHLRYI-EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVS   54 (183)
Q Consensus         7 ~~l~~l-~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~   54 (183)
                      ++++.+ ++.+|+.++|+|+||+|||||+++|+++.+++.|.+.+.|+.
T Consensus       144 ~aID~ll~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeR  192 (433)
T PRK07594        144 RAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER  192 (433)
T ss_pred             eeeeeeeecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCC
Confidence            455554 589999999999999999999999999999999888776653

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=98.46  E-value=1.8e-07  Score=83.43  Aligned_cols=87  Identities=13%  Similarity=-0.009  Sum_probs=57.0

Q ss_pred             HHHHHHHcCCCCc-cCCCCCCCChhhhheecCchhh----------c--ccccccCcccccccccceeecCcccccCCCC
Q 036195           90 CLERIYVHGCPSL-RKLPFSLESGKRNGVLIGEEEW----------W--NQLEWDDEATKHVFSSKLIITTPQTVISIPQ  156 (183)
Q Consensus        90 ~l~vLe~l~L~~L-~~~~~~~LSgGqk~~i~~~~~w----------~--~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~  156 (183)
                      .++.|..+||.-+ ..+|..+|||||-|+|.=..|+          +  ||..+...+-...+...+..+..+ .-++++
T Consensus       802 kLqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~-GnTViV  880 (935)
T COG0178         802 KLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDK-GNTVIV  880 (935)
T ss_pred             HHHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEE
Confidence            3555666787754 6789999999998854222222          1  555555444444555555555555 889999


Q ss_pred             CCceeeeeecccceEEEEeeCCCC
Q 036195          157 PSYTYEATIRPRYELICIDVDDTG  180 (183)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~  180 (183)
                      +.|||+ |++.+|.+  ||+-..|
T Consensus       881 IEHNLd-VIk~AD~I--IDLGPeG  901 (935)
T COG0178         881 IEHNLD-VIKTADWI--IDLGPEG  901 (935)
T ss_pred             Eecccc-eEeecCEE--EEcCCCC
Confidence            999998 56788865  5665444

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=98.46  E-value=1.8e-07  Score=70.19  Aligned_cols=34  Identities=21%  Similarity=0.302  Sum_probs=28.5

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEE
Q 036195           17 VKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIY   51 (183)
Q Consensus        17 Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~   51 (183)
                      |++++|+|||||||||+++.|++.+.+. |.+.+.
T Consensus         1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~~   34 (179)
T TIGR02322         1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHFV   34 (179)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEEe
Confidence            6789999999999999999999987654 655553

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.45  E-value=6.2e-07  Score=83.66  Aligned_cols=113  Identities=16%  Similarity=0.066  Sum_probs=70.0

Q ss_pred             ccccccce--ecCccEEEEEcCCCCcHHHHHHHHhcCCCC---CCcEEEEEecCcccccc-------------ccchhee
Q 036195            6 RPHLRYIE--DDGVKIIGLYGVRGVGKSTLIKQLNDMFSD---MSHKFAIYAVSLQKKIS-------------VCSFILI   67 (183)
Q Consensus         6 ~~~l~~l~--i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p---~~G~I~~~g~~~~~~~~-------------~~~~~~l   67 (183)
                      ..++++++  +++|+.+-++||.|||||||+++++|-..-   ..|+|.++|.+...-..             ....++.
T Consensus       128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr  207 (1391)
T KOG0065|consen  128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR  207 (1391)
T ss_pred             ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence            46788776  899999999999999999999999998743   35699999987553110             0111222


Q ss_pred             ehhhhccCCC-CccccccccchH-----HHHHHHHcCCCCccCCC-----CCCCChhhhhee
Q 036195           68 RRAYFFKLPN-LKSICHEALAFP-----CLERIYVHGCPSLRKLP-----FSLESGKRNGVL  118 (183)
Q Consensus        68 ~~~~lg~lp~-l~~l~~~~~~~~-----~l~vLe~l~L~~L~~~~-----~~~LSgGqk~~i  118 (183)
                      +.+....--+ .+.-+.+....+     ...+++.+|+..-++..     .+-.|||||+++
T Consensus       208 eTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRv  269 (1391)
T KOG0065|consen  208 ETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRV  269 (1391)
T ss_pred             ehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCccccee
Confidence            2222111000 000111111112     34678889997665554     456899999854

>PRK07960 fliI flagellum-specific ATP synthase; Validated

Probab=98.45  E-value=1.4e-07  Score=80.06  Aligned_cols=49  Identities=16%  Similarity=0.192  Sum_probs=41.8

Q ss_pred             cccc-ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCC---cEEEEEecCcc
Q 036195            8 HLRY-IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMS---HKFAIYAVSLQ   56 (183)
Q Consensus         8 ~l~~-l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~---G~I~~~g~~~~   56 (183)
                      +++. +++.+|++++|+|+||+|||||+++|+++.+|+.   |.|.+.|.++.
T Consensus       165 aID~ll~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~Igerg~ev~  217 (455)
T PRK07960        165 AINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVK  217 (455)
T ss_pred             eeeecccccCCcEEEEECCCCCCccHHHHHHhCCCCCCEEEEEEEEECCeEHH
Confidence            3443 4689999999999999999999999999999985   88888887664

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=98.45  E-value=1.3e-07  Score=73.76  Aligned_cols=32  Identities=34%  Similarity=0.488  Sum_probs=27.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCC--CCcEEEE
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMFSD--MSHKFAI   50 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~~p--~~G~I~~   50 (183)
                      ++||.||||||||||++.|++++.+  .++.|.+
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~v   34 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVEL   34 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEE
Confidence            5899999999999999999999975  5566665

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PRK09099 type III secretion system ATPase; Provisional

Probab=98.44  E-value=3.1e-07  Score=78.13  Aligned_cols=48  Identities=19%  Similarity=0.171  Sum_probs=41.9

Q ss_pred             cccccc-eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecC
Q 036195            7 PHLRYI-EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVS   54 (183)
Q Consensus         7 ~~l~~l-~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~   54 (183)
                      ++++.+ .+.+|++++|+|+||+|||||+++|++...++.|.+.+.|+.
T Consensus       152 ~~ID~l~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~iGer  200 (441)
T PRK09099        152 RIVDGLMTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVIALIGER  200 (441)
T ss_pred             eeccceeeecCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccC
Confidence            345544 589999999999999999999999999999999998888754

>PRK01889 GTPase RsgA; Reviewed

Probab=98.43  E-value=1.8e-07  Score=77.82  Aligned_cols=40  Identities=30%  Similarity=0.282  Sum_probs=37.5

Q ss_pred             ecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEec
Q 036195           14 DDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAV   53 (183)
Q Consensus        14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~   53 (183)
                      +.+|++++|+|+||+|||||++.|+|...+..|+|.+++.
T Consensus       192 L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~  231 (356)
T PRK01889        192 LSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDS  231 (356)
T ss_pred             hhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCC
Confidence            6789999999999999999999999999999999998764

>PRK05922 type III secretion system ATPase; Validated

Probab=98.43  E-value=3.5e-07  Score=77.55  Aligned_cols=46  Identities=17%  Similarity=0.238  Sum_probs=39.7

Q ss_pred             cccc-ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEec
Q 036195            8 HLRY-IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAV   53 (183)
Q Consensus         8 ~l~~-l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~   53 (183)
                      +++. +.+.+|+.++|+|+||+|||||+++|++..+++.|.+..-|.
T Consensus       147 ~ID~ll~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~~d~gvi~liGe  193 (434)
T PRK05922        147 AIDAFLTLGKGQRIGVFSEPGSGKSSLLSTIAKGSKSTINVIALIGE  193 (434)
T ss_pred             eecceEEEcCCcEEEEECCCCCChHHHHHHHhccCCCCceEEEEeCC
Confidence            4443 469999999999999999999999999999999998866554

>TIGR01026 fliI_yscN ATPase FliI/YscN family

Probab=98.42  E-value=3.4e-07  Score=78.04  Aligned_cols=48  Identities=21%  Similarity=0.236  Sum_probs=41.1

Q ss_pred             cccccc-eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecC
Q 036195            7 PHLRYI-EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVS   54 (183)
Q Consensus         7 ~~l~~l-~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~   54 (183)
                      ++++.+ .+.+|+.++|+|+||+|||||+++|++..+|+.|.+...|+.
T Consensus       152 ~~iD~l~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r  200 (440)
T TIGR01026       152 RSIDGLLTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGER  200 (440)
T ss_pred             eeeeeccccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeec
Confidence            455544 589999999999999999999999999999999877776654

This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.

>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase

Probab=98.41  E-value=3.4e-07  Score=77.70  Aligned_cols=48  Identities=23%  Similarity=0.234  Sum_probs=41.2

Q ss_pred             cccccc-eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecC
Q 036195            7 PHLRYI-EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVS   54 (183)
Q Consensus         7 ~~l~~l-~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~   54 (183)
                      ++++.+ .+.+|+.++|+|+||+|||||+++|++..+|+.|.+..-|..
T Consensus       134 ~~id~l~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~~  182 (422)
T TIGR02546       134 RAIDGLLTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIALIGER  182 (422)
T ss_pred             eeehhhccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEccC
Confidence            345544 589999999999999999999999999999999988876553

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=98.41  E-value=2.1e-07  Score=74.79  Aligned_cols=33  Identities=33%  Similarity=0.553  Sum_probs=28.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEE
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIY   51 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~   51 (183)
                      ++||.|+||||||||++.|++++++..|.+...
T Consensus         1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~   33 (273)
T cd02026           1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICL   33 (273)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhhCCCceEEEEC
Confidence            589999999999999999999999887765543

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PLN02796 D-glycerate 3-kinase

Probab=98.41  E-value=2.2e-07  Score=76.53  Aligned_cols=42  Identities=26%  Similarity=0.368  Sum_probs=35.6

Q ss_pred             cCccE-----EEEEcCCCCcHHHHHHHHhcCCCCC---CcEEEEEecCcc
Q 036195           15 DGVKI-----IGLYGVRGVGKSTLIKQLNDMFSDM---SHKFAIYAVSLQ   56 (183)
Q Consensus        15 ~~Ge~-----~~liGpNGaGKSTLl~~i~gl~~p~---~G~I~~~g~~~~   56 (183)
                      ++|+.     +||.|++|||||||++.|.+++++.   .|.|.++|..+.
T Consensus        93 ~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt  142 (347)
T PLN02796         93 KDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLT  142 (347)
T ss_pred             ccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccc
Confidence            46666     9999999999999999999999875   688888887543

>PRK04863 mukB cell division protein MukB; Provisional

Probab=98.40  E-value=3.1e-07  Score=87.81  Aligned_cols=43  Identities=19%  Similarity=0.196  Sum_probs=37.5

Q ss_pred             cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecC
Q 036195           11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVS   54 (183)
Q Consensus        11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~   54 (183)
                      .|++.+| +++|+|+|||||||+|++|++++.|..|.+.|++.+
T Consensus        22 ~~~f~~~-~~~l~G~NGaGKSTll~ai~~~l~~~~~~~~f~~~~   64 (1486)
T PRK04863         22 TFDLDEL-VTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTT   64 (1486)
T ss_pred             EEEecCC-eEEEECCCCCCHHHHHHHHHccccCCCCeEEECCcc
Confidence            3456665 999999999999999999999999999999888654

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=98.38  E-value=2e-07  Score=72.67  Aligned_cols=45  Identities=20%  Similarity=0.048  Sum_probs=36.6

Q ss_pred             cccccc--eecCccEEEEEcCCCCcHHHHHHHHhc-CCCCCCcEEEEE
Q 036195            7 PHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLND-MFSDMSHKFAIY   51 (183)
Q Consensus         7 ~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~g-l~~p~~G~I~~~   51 (183)
                      .+..++  ++.+|++++|+||||+||||+++++++ .+.++.|.....
T Consensus        19 ~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a   66 (222)
T cd03287          19 FVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPA   66 (222)
T ss_pred             EEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEc
Confidence            344444  467899999999999999999999999 667888876543

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK09862 putative ATP-dependent protease; Provisional

Probab=98.38  E-value=4.6e-07  Score=78.36  Aligned_cols=45  Identities=27%  Similarity=0.432  Sum_probs=40.4

Q ss_pred             ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcc
Q 036195           12 IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ   56 (183)
Q Consensus        12 l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~   56 (183)
                      +.+..|+.++|+||||+|||||++.|.|+++|.+|++.++...+.
T Consensus       205 laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~  249 (506)
T PRK09862        205 ITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAIL  249 (506)
T ss_pred             eeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhh
Confidence            457889999999999999999999999999999999998876543

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.38  E-value=1.5e-07  Score=80.88  Aligned_cols=35  Identities=26%  Similarity=0.209  Sum_probs=31.3

Q ss_pred             eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcE
Q 036195           13 EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHK   47 (183)
Q Consensus        13 ~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~   47 (183)
                      .+.+|++++++||||+||||++..|++.+.+..|.
T Consensus       252 ~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~  286 (484)
T PRK06995        252 LLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGA  286 (484)
T ss_pred             cccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCC
Confidence            46789999999999999999999999998777664

>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI

Probab=98.36  E-value=6.4e-07  Score=75.81  Aligned_cols=49  Identities=18%  Similarity=0.181  Sum_probs=42.5

Q ss_pred             cccccc-eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCc
Q 036195            7 PHLRYI-EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSL   55 (183)
Q Consensus         7 ~~l~~l-~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~   55 (183)
                      ++++.+ .+.+|++++|+|+||+|||||+++|++..+++.|.|.+.|+..
T Consensus       126 ~~iD~l~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~~~~gvi~~~Ger~  175 (413)
T TIGR03497       126 KAIDGLLTIGKGQRVGIFAGSGVGKSTLLGMIARNAKADINVIALIGERG  175 (413)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccch
Confidence            445544 5899999999999999999999999999999999888877654

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI

Probab=98.35  E-value=7.1e-07  Score=75.47  Aligned_cols=48  Identities=17%  Similarity=0.199  Sum_probs=40.4

Q ss_pred             ccccc-ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecC
Q 036195            7 PHLRY-IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVS   54 (183)
Q Consensus         7 ~~l~~-l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~   54 (183)
                      ++++. +.+.+|++++|+|+||+|||||+++|++..+|+.+.+..-|+.
T Consensus       126 ~~id~l~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~~~~~vi~~iGer  174 (411)
T TIGR03496       126 RAINGLLTVGRGQRMGIFAGSGVGKSTLLGMMARYTEADVVVVGLIGER  174 (411)
T ss_pred             EeecceEEEecCcEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEEecC
Confidence            44544 4699999999999999999999999999999998877666653

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>PRK06793 fliI flagellum-specific ATP synthase; Validated

Probab=98.33  E-value=6.8e-07  Score=75.85  Aligned_cols=47  Identities=19%  Similarity=0.233  Sum_probs=41.4

Q ss_pred             ccc-cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecC
Q 036195            8 HLR-YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVS   54 (183)
Q Consensus         8 ~l~-~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~   54 (183)
                      +++ .+.+.+|+.++|+|+||+|||||+++|++..+|+.|.|.+.|+.
T Consensus       146 aID~ll~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGer  193 (432)
T PRK06793        146 SIDSMLTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGER  193 (432)
T ss_pred             EEeccceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCC
Confidence            444 35699999999999999999999999999999999998877654

>cd04155 Arl3 Arl3 subfamily

Probab=98.32  E-value=6.4e-07  Score=66.28  Aligned_cols=36  Identities=22%  Similarity=0.293  Sum_probs=29.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcC----CCCCCc----EEEEEec
Q 036195           18 KIIGLYGVRGVGKSTLIKQLNDM----FSDMSH----KFAIYAV   53 (183)
Q Consensus        18 e~~~liGpNGaGKSTLl~~i~gl----~~p~~G----~I~~~g~   53 (183)
                      -.++|+|+||||||||++.+.|.    ..|+.|    .+.+++.
T Consensus        15 ~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~   58 (173)
T cd04155          15 PRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGF   58 (173)
T ss_pred             cEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCE
Confidence            45899999999999999999997    568888    5655544

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>TIGR03263 guanyl_kin guanylate kinase

Probab=98.31  E-value=5.3e-07  Score=67.59  Aligned_cols=26  Identities=42%  Similarity=0.460  Sum_probs=24.1

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHhcCCC
Q 036195           17 VKIIGLYGVRGVGKSTLIKQLNDMFS   42 (183)
Q Consensus        17 Ge~~~liGpNGaGKSTLl~~i~gl~~   42 (183)
                      |++++|+||||||||||++.|++...
T Consensus         1 g~ii~l~G~~GsGKsTl~~~L~~~~~   26 (180)
T TIGR03263         1 GLLIVISGPSGVGKSTLVKALLEEDP   26 (180)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHccCc
Confidence            78999999999999999999999763

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.30  E-value=5.7e-07  Score=72.78  Aligned_cols=34  Identities=35%  Similarity=0.304  Sum_probs=32.1

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEE
Q 036195           17 VKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAI   50 (183)
Q Consensus        17 Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~   50 (183)
                      +++++++|+||+|||||++.|.|...++.|+|..
T Consensus       161 ~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~  194 (287)
T cd01854         161 GKTSVLVGQSGVGKSTLINALLPDLDLATGEISE  194 (287)
T ss_pred             cceEEEECCCCCCHHHHHHHHhchhhccccceec
Confidence            5899999999999999999999999999999875

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK03846 adenylylsulfate kinase; Provisional

Probab=98.30  E-value=6e-07  Score=68.68  Aligned_cols=43  Identities=16%  Similarity=0.336  Sum_probs=36.1

Q ss_pred             ecCccEEEEEcCCCCcHHHHHHHHhcCCCCC-CcEEEEEecCcc
Q 036195           14 DDGVKIIGLYGVRGVGKSTLIKQLNDMFSDM-SHKFAIYAVSLQ   56 (183)
Q Consensus        14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~-~G~I~~~g~~~~   56 (183)
                      -.+|++++|+|+|||||||+.+.|++.+.+. .|.+.+++.++.
T Consensus        21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~   64 (198)
T PRK03846         21 GHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVR   64 (198)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHH
Confidence            3689999999999999999999999987654 467888876654

>PRK00098 GTPase RsgA; Reviewed

Probab=98.30  E-value=7.6e-07  Score=72.42  Aligned_cols=35  Identities=31%  Similarity=0.341  Sum_probs=33.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEE
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAI   50 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~   50 (183)
                      +|.+++++|+||+|||||++.|.|...+..|+|..
T Consensus       163 ~gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~  197 (298)
T PRK00098        163 AGKVTVLAGQSGVGKSTLLNALAPDLELKTGEISE  197 (298)
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCcCCCCcceec
Confidence            58999999999999999999999999999999986

>PRK05480 uridine/cytidine kinase; Provisional

Probab=98.29  E-value=8.8e-07  Score=68.17  Aligned_cols=37  Identities=24%  Similarity=0.401  Sum_probs=29.7

Q ss_pred             cCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEec
Q 036195           15 DGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAV   53 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~   53 (183)
                      .++.+++|.|+||||||||.+.|++.+.  .+.+.+-..
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~--~~~~~~i~~   40 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEELG--DESIAVIPQ   40 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhC--CCceEEEeC
Confidence            5788999999999999999999999983  344544333

>PRK05688 fliI flagellum-specific ATP synthase; Validated

Probab=98.29  E-value=5.7e-07  Score=76.59  Aligned_cols=38  Identities=21%  Similarity=0.302  Sum_probs=33.1

Q ss_pred             cccccc-eecCccEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 036195            7 PHLRYI-EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDM   44 (183)
Q Consensus         7 ~~l~~l-~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~   44 (183)
                      ++++.+ .+.+|+.++|+|+||+|||||+++|+|+..|+
T Consensus       157 ~aID~l~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~~d  195 (451)
T PRK05688        157 RSINGLLTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEAD  195 (451)
T ss_pred             eeecceEEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence            345444 68999999999999999999999999998775

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=98.29  E-value=5.3e-07  Score=69.91  Aligned_cols=41  Identities=24%  Similarity=0.230  Sum_probs=31.2

Q ss_pred             cccceecCc--cEEEEEcCCCCcHHHHHHHHhc--CCCCCCcEEEE
Q 036195            9 LRYIEDDGV--KIIGLYGVRGVGKSTLIKQLND--MFSDMSHKFAI   50 (183)
Q Consensus         9 l~~l~i~~G--e~~~liGpNGaGKSTLl~~i~g--l~~p~~G~I~~   50 (183)
                      =.++.+.++  .++.|+||||+|||||||.++.  ++ +..|....
T Consensus        19 pnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~   63 (213)
T cd03281          19 PNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVP   63 (213)
T ss_pred             cceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeE
Confidence            346677766  7899999999999999999983  33 55665443

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=98.28  E-value=6.1e-07  Score=69.70  Aligned_cols=35  Identities=26%  Similarity=0.159  Sum_probs=27.8

Q ss_pred             cccccceecCc-cEEEEEcCCCCcHHHHHHHHhcCC
Q 036195            7 PHLRYIEDDGV-KIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus         7 ~~l~~l~i~~G-e~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .+..++++..+ ++++|+||||+||||++|+++++.
T Consensus        19 ~v~n~~~l~~~~~~~~l~Gpn~sGKstllr~i~~~~   54 (216)
T cd03284          19 FVPNDTELDPERQILLITGPNMAGKSTYLRQVALIA   54 (216)
T ss_pred             eEeeeEEecCCceEEEEECCCCCChHHHHHHHHHHH
Confidence            35566665433 899999999999999999998753

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=98.28  E-value=9.7e-07  Score=70.00  Aligned_cols=42  Identities=10%  Similarity=0.029  Sum_probs=36.7

Q ss_pred             cccccccc-eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCc
Q 036195            5 YRPHLRYI-EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSH   46 (183)
Q Consensus         5 ~~~~l~~l-~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G   46 (183)
                      .++++|.| .+.+|+.++|+||+|+|||||++.|+.......+
T Consensus         3 ~~~~id~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~f   45 (249)
T cd01128           3 STRVVDLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHP   45 (249)
T ss_pred             chhheeeecccCCCCEEEEECCCCCCHHHHHHHHHhccccccC
Confidence            45678888 5999999999999999999999999999876543

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>TIGR00606 rad50 rad50

Probab=98.28  E-value=7.7e-07  Score=85.16  Aligned_cols=38  Identities=24%  Similarity=0.280  Sum_probs=32.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHH----hcCCCCC-CcEEEEEecCc
Q 036195           18 KIIGLYGVRGVGKSTLIKQL----NDMFSDM-SHKFAIYAVSL   55 (183)
Q Consensus        18 e~~~liGpNGaGKSTLl~~i----~gl~~p~-~G~I~~~g~~~   55 (183)
                      .+++|+|||||||||++.+|    .|..+|. .|.+.+.+..+
T Consensus        29 ~~~~I~G~NGaGKTTil~ai~~al~G~~~~~~~g~~~i~~~~~   71 (1311)
T TIGR00606        29 PLTILVGPNGAGKTTIIECLKYICTGDFPPGTKGNTFVHDPKV   71 (1311)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCceEecCCCc
Confidence            49999999999999999999    4999885 78888876544

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.25  E-value=6.9e-07  Score=75.63  Aligned_cols=27  Identities=30%  Similarity=0.359  Sum_probs=25.1

Q ss_pred             ecCccEEEEEcCCCCcHHHHHHHHhcC
Q 036195           14 DDGVKIIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        14 i~~Ge~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      +.+|++++++||||+||||+++.|++.
T Consensus       188 ~~~g~vi~lvGpnG~GKTTtlakLA~~  214 (420)
T PRK14721        188 IEQGGVYALIGPTGVGKTTTTAKLAAR  214 (420)
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            478999999999999999999999985

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.25  E-value=7.5e-07  Score=80.07  Aligned_cols=43  Identities=21%  Similarity=0.235  Sum_probs=35.4

Q ss_pred             ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCc--EEEEEecC
Q 036195           12 IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSH--KFAIYAVS   54 (183)
Q Consensus        12 l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G--~I~~~g~~   54 (183)
                      +.+++|++++++||||+||||++..|++.+....|  +|.+-..|
T Consensus       180 ~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~D  224 (767)
T PRK14723        180 ALLAQGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTD  224 (767)
T ss_pred             cccCCCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCc
Confidence            34678999999999999999999999999876766  56665444

>PRK08472 fliI flagellum-specific ATP synthase; Validated

Probab=98.24  E-value=1.5e-06  Score=73.88  Aligned_cols=48  Identities=19%  Similarity=0.167  Sum_probs=41.2

Q ss_pred             ccccc-eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCc
Q 036195            8 HLRYI-EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSL   55 (183)
Q Consensus         8 ~l~~l-~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~   55 (183)
                      +++.+ ++.+|++++|+|+||+|||||+++|++...++.+.|...|+..
T Consensus       147 aid~l~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~~~~v~vi~~iGerg  195 (434)
T PRK08472        147 SIDGLLTCGKGQKLGIFAGSGVGKSTLMGMIVKGCLAPIKVVALIGERG  195 (434)
T ss_pred             HhhhcceecCCCEEEEECCCCCCHHHHHHHHhhccCCCEEEEEeeCccc
Confidence            45544 5899999999999999999999999999988888887777653

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=98.24  E-value=8.7e-07  Score=74.62  Aligned_cols=38  Identities=32%  Similarity=0.467  Sum_probs=33.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCCCCC---CcEEEEEecCc
Q 036195           18 KIIGLYGVRGVGKSTLIKQLNDMFSDM---SHKFAIYAVSL   55 (183)
Q Consensus        18 e~~~liGpNGaGKSTLl~~i~gl~~p~---~G~I~~~g~~~   55 (183)
                      =++||.|++|||||||.+.|.+++++.   .|.|.++|..+
T Consensus       213 lIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfYL  253 (460)
T PLN03046        213 LVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFYL  253 (460)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCccC
Confidence            589999999999999999999999876   78888888654

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=98.23  E-value=9.1e-07  Score=67.60  Aligned_cols=32  Identities=25%  Similarity=0.302  Sum_probs=28.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEE
Q 036195           20 IGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIY   51 (183)
Q Consensus        20 ~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~   51 (183)
                      ++|+|+||+|||||+++|.|...+++|.+...
T Consensus         4 I~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~   35 (197)
T cd04104           4 IAVTGESGAGKSSFINALRGVGHEEEGAAPTG   35 (197)
T ss_pred             EEEECCCCCCHHHHHHHHhccCCCCCCccccC
Confidence            78999999999999999999988888877665

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>PRK08972 fliI flagellum-specific ATP synthase; Validated

Probab=98.23  E-value=1.1e-06  Score=74.46  Aligned_cols=37  Identities=22%  Similarity=0.309  Sum_probs=32.3

Q ss_pred             ccc-cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 036195            8 HLR-YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDM   44 (183)
Q Consensus         8 ~l~-~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~   44 (183)
                      +++ .+.+.+|+.++|+|+||+|||||+++|++...++
T Consensus       152 aID~ll~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d  189 (444)
T PRK08972        152 AINAMLTVGKGQRMGLFAGSGVGKSVLLGMMTRGTTAD  189 (444)
T ss_pred             eecceEEEcCCCEEEEECCCCCChhHHHHHhccCCCCC
Confidence            444 3469999999999999999999999999988774

>PLN02318 phosphoribulokinase/uridine kinase

Probab=98.23  E-value=1.2e-06  Score=76.67  Aligned_cols=36  Identities=14%  Similarity=0.333  Sum_probs=32.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecC
Q 036195           18 KIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVS   54 (183)
Q Consensus        18 e~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~   54 (183)
                      -++||.||||||||||++.|++++ |..|.|.++|..
T Consensus        66 iIIGIaGpSGSGKTTLAk~LaglL-p~vgvIsmDdy~  101 (656)
T PLN02318         66 ILVGVAGPSGAGKTVFTEKVLNFM-PSIAVISMDNYN  101 (656)
T ss_pred             EEEEEECCCCCcHHHHHHHHHhhC-CCcEEEEEccee
Confidence            489999999999999999999997 678999998864

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]

Probab=98.21  E-value=1.2e-07  Score=79.39  Aligned_cols=159  Identities=14%  Similarity=0.085  Sum_probs=82.4

Q ss_pred             ecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcccccccc-------chhee--ehh-------hhccCCC
Q 036195           14 DDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVC-------SFILI--RRA-------YFFKLPN   77 (183)
Q Consensus        14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~-------~~~~l--~~~-------~lg~lp~   77 (183)
                      -.+|++.|++|.||-||||-+++++|-.+|.-|.-. .+.+.++....+       .|+..  ..+       .+..+|+
T Consensus        97 prpg~vlglvgtngigkstAlkilagk~kpnlg~~~-~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr  175 (592)
T KOG0063|consen   97 PRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYD-NPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPR  175 (592)
T ss_pred             CCcchhccccccCcccHHHHHHHHhCCCCCCCCCCC-CCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHH
Confidence            479999999999999999999999999999877531 111111100000       00000  000       0000000


Q ss_pred             Cc-----c-ccccccchHHHHHHHHcCCCCccCCCCCCCChhhhh--ee----cCchhhc---ccccccCcccccccccc
Q 036195           78 LK-----S-ICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNG--VL----IGEEEWW---NQLEWDDEATKHVFSSK  142 (183)
Q Consensus        78 l~-----~-l~~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~--~i----~~~~~w~---~~l~~~d~~~~~~~~~~  142 (183)
                      ..     . +..........++++.+.+..+.++....||||+.|  ++    .++.+-.   |+-...|...+......
T Consensus       176 ~~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~  255 (592)
T KOG0063|consen  176 AVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAIT  255 (592)
T ss_pred             HHHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHH
Confidence            00     0 000000112356677788888999999999999766  33    2222221   34444443333333322


Q ss_pred             eeecCcccccCCCCCCceeeeeecccceEEEE
Q 036195          143 LIITTPQTVISIPQPSYTYEATIRPRYELICI  174 (183)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (183)
                      |..+.. ...-|.++.|||...-=.+|-+-|+
T Consensus       256 IRsl~~-p~~YiIVVEHDLsVLDylSDFiCcL  286 (592)
T KOG0063|consen  256 IRSLIN-PDRYIIVVEHDLSVLDYLSDFICCL  286 (592)
T ss_pred             HHHhhC-CCCeEEEEEeechHHHhhhcceeEE
Confidence            322222 2455666778776544445544443

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=98.20  E-value=6.8e-07  Score=67.23  Aligned_cols=34  Identities=24%  Similarity=0.217  Sum_probs=29.6

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHh---cCCCCCCcEEEE
Q 036195           17 VKIIGLYGVRGVGKSTLIKQLN---DMFSDMSHKFAI   50 (183)
Q Consensus        17 Ge~~~liGpNGaGKSTLl~~i~---gl~~p~~G~I~~   50 (183)
                      ..+++|+||+||||||+.+.|+   |+..++.|++..
T Consensus         3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~   39 (188)
T TIGR01360         3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLR   39 (188)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHH
Confidence            4689999999999999999999   888888887643

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>cd00879 Sar1 Sar1 subfamily

Probab=98.19  E-value=1.7e-06  Score=65.17  Aligned_cols=46  Identities=26%  Similarity=0.408  Sum_probs=33.7

Q ss_pred             ccccce--ecCccEEEEEcCCCCcHHHHHHHHhc--------CCCCCCcEEEEEecC
Q 036195            8 HLRYIE--DDGVKIIGLYGVRGVGKSTLIKQLND--------MFSDMSHKFAIYAVS   54 (183)
Q Consensus         8 ~l~~l~--i~~Ge~~~liGpNGaGKSTLl~~i~g--------l~~p~~G~I~~~g~~   54 (183)
                      +|+++.  .+++++ +|+|++|||||||++.+.+        ...|+.+++.+++.+
T Consensus         9 ~~~~~~~~~~~~ki-~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~~~   64 (190)
T cd00879           9 VLSSLGLYNKEAKI-LFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNIK   64 (190)
T ss_pred             HHHHhhcccCCCEE-EEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEECCEE
Confidence            455554  445544 9999999999999999998        345666777776543

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>PRK06315 type III secretion system ATPase; Provisional

Probab=98.19  E-value=1.8e-06  Score=73.49  Aligned_cols=45  Identities=20%  Similarity=0.303  Sum_probs=36.3

Q ss_pred             ccc-cceecCccEEEEEcCCCCcHHHHHHHHhcCCCC-CCcEEEEEe
Q 036195            8 HLR-YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSD-MSHKFAIYA   52 (183)
Q Consensus         8 ~l~-~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p-~~G~I~~~g   52 (183)
                      +++ .+.+.+|+.++|+|+||+|||||+++|+++.++ +.|.|.+.|
T Consensus       154 aID~~l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liG  200 (442)
T PRK06315        154 CIDGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIG  200 (442)
T ss_pred             EEeccccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEEC
Confidence            444 346999999999999999999999999999854 446666644

>PRK00889 adenylylsulfate kinase; Provisional

Probab=98.18  E-value=1.4e-06  Score=65.17  Aligned_cols=39  Identities=15%  Similarity=0.267  Sum_probs=33.3

Q ss_pred             cCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEE-Eec
Q 036195           15 DGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAI-YAV   53 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~-~g~   53 (183)
                      ++|++++|+|++||||||+.+.|++.+.+..+.+.+ ++.
T Consensus         2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D   41 (175)
T PRK00889          2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGD   41 (175)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCc
Confidence            579999999999999999999999999877667764 443

>TIGR00368 Mg chelatase-related protein

Probab=98.18  E-value=2e-06  Score=74.53  Aligned_cols=44  Identities=23%  Similarity=0.373  Sum_probs=39.4

Q ss_pred             eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcc
Q 036195           13 EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ   56 (183)
Q Consensus        13 ~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~   56 (183)
                      .+..|+.+.|+||||+|||||++.|.++++|.+|++.+....+.
T Consensus       207 aa~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~  250 (499)
T TIGR00368       207 AAAGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIW  250 (499)
T ss_pred             hccCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccc
Confidence            36788999999999999999999999999999999988876543

The N-terminal end matches very strongly a pfam Mg_chelatase domain.

>PRK06820 type III secretion system ATPase; Validated

Probab=98.17  E-value=3.2e-06  Score=71.94  Aligned_cols=47  Identities=26%  Similarity=0.254  Sum_probs=38.4

Q ss_pred             cccccc-eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEec
Q 036195            7 PHLRYI-EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAV   53 (183)
Q Consensus         7 ~~l~~l-~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~   53 (183)
                      ++++.+ ++.+||.++|+|+||+|||||+++|++...|+.+.+-.-|+
T Consensus       152 ~aID~l~~i~~Gqri~I~G~sG~GKStLl~~I~~~~~~dv~V~~~iGe  199 (440)
T PRK06820        152 RAIDGILSCGEGQRIGIFAAAGVGKSTLLGMLCADSAADVMVLALIGE  199 (440)
T ss_pred             ceecceEEecCCCEEEEECCCCCChHHHHHHHhccCCCCEEEEEEEcc
Confidence            455555 59999999999999999999999999999888765434444

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB

Probab=98.16  E-value=2.5e-06  Score=71.10  Aligned_cols=29  Identities=28%  Similarity=0.397  Sum_probs=26.6

Q ss_pred             cCccEEEEEcCCCCcHHHHHHHHhcCCCC
Q 036195           15 DGVKIIGLYGVRGVGKSTLIKQLNDMFSD   43 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~~p   43 (183)
                      .++..+.|+||+||||||++++|++.+.+
T Consensus       132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~  160 (358)
T TIGR02524       132 PQEGIVFITGATGSGKSTLLAAIIRELAE  160 (358)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            58899999999999999999999999843

Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=98.15  E-value=2.3e-06  Score=68.99  Aligned_cols=41  Identities=20%  Similarity=0.153  Sum_probs=35.1

Q ss_pred             eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEec
Q 036195           13 EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAV   53 (183)
Q Consensus        13 ~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~   53 (183)
                      .=..+.+++|+|+||||||||++.+.+.+++..+.+.+.|.
T Consensus       100 ~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD  140 (290)
T PRK10463        100 AARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGD  140 (290)
T ss_pred             HhcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCC
Confidence            34678999999999999999999999988877777777664

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.15  E-value=2.2e-06  Score=63.44  Aligned_cols=35  Identities=31%  Similarity=0.291  Sum_probs=25.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEE
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAI   50 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~   50 (183)
                      ++++++++|++|+|||||+|.|.+-..-..|+|.-
T Consensus        34 ~~k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~   68 (161)
T PF03193_consen   34 KGKTSVLLGQSGVGKSSLINALLPEAKQKTGEISE   68 (161)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHTSS----S----
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhhcchhhhhhhc
Confidence            46999999999999999999999987666677653

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>cd04159 Arl10_like Arl10-like subfamily

Probab=98.14  E-value=1.5e-06  Score=62.57  Aligned_cols=21  Identities=33%  Similarity=0.547  Sum_probs=20.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 036195           20 IGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        20 ~~liGpNGaGKSTLl~~i~gl   40 (183)
                      ++|+|++|||||||++.+.+.
T Consensus         2 i~i~G~~~~GKssl~~~l~~~   22 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGG   22 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccC
Confidence            689999999999999999998

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=98.13  E-value=4e-06  Score=58.74  Aligned_cols=38  Identities=24%  Similarity=0.232  Sum_probs=30.6

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHhcCCCCCC-cEEEEEec
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQLNDMFSDMS-HKFAIYAV   53 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~-G~I~~~g~   53 (183)
                      .+..+.|+||+|+||||+++.++..+.... +-+.+...
T Consensus         1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~   39 (148)
T smart00382        1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGE   39 (148)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCE
Confidence            367899999999999999999999987665 45555443

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>TIGR00101 ureG urease accessory protein UreG

Probab=98.13  E-value=3.2e-06  Score=64.91  Aligned_cols=36  Identities=28%  Similarity=0.464  Sum_probs=28.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCc
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSL   55 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~   55 (183)
                      .++|+||||||||||++.+.+.+++..+ +.+...+.
T Consensus         3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~-~~~~~~d~   38 (199)
T TIGR00101         3 KIGVAGPVGSGKTALIEALTRALRQKYQ-LAVITNDI   38 (199)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhCcCCc-EEEEeCCc
Confidence            5899999999999999999999887655 54444443

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=98.11  E-value=1.7e-06  Score=62.99  Aligned_cols=29  Identities=34%  Similarity=0.455  Sum_probs=24.9

Q ss_pred             EEEEcCCCCcHHHHHHHHh--cCCCCCCcEE
Q 036195           20 IGLYGVRGVGKSTLIKQLN--DMFSDMSHKF   48 (183)
Q Consensus        20 ~~liGpNGaGKSTLl~~i~--gl~~p~~G~I   48 (183)
                      ++++|++|||||||++.|+  +...+.+|++
T Consensus         2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~   32 (170)
T cd01876           2 IAFAGRSNVGKSSLINALTNRKKLARTSKTP   32 (170)
T ss_pred             EEEEcCCCCCHHHHHHHHhcCCceeeecCCC
Confidence            6899999999999999999  6777676663

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A

Probab=98.11  E-value=2.3e-06  Score=64.60  Aligned_cols=29  Identities=28%  Similarity=0.444  Sum_probs=23.4

Q ss_pred             ceecCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           12 IEDDGVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        12 l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      +++.+| +.+|+||||+||||++.+|.-.+
T Consensus        15 i~f~~g-~~vi~G~Ng~GKStil~ai~~~L   43 (202)
T PF13476_consen   15 IDFSPG-LNVIYGPNGSGKSTILEAIRYAL   43 (202)
T ss_dssp             EE--SE-EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEcCCC-cEEEECCCCCCHHHHHHHHHHHH
Confidence            446666 99999999999999999987665

>cd01131 PilT Pilus retraction ATPase PilT

Probab=98.11  E-value=3.7e-06  Score=64.42  Aligned_cols=37  Identities=22%  Similarity=0.356  Sum_probs=29.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCC-CCcEEEEEecCc
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMFSD-MSHKFAIYAVSL   55 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~~p-~~G~I~~~g~~~   55 (183)
                      ++.|.||+||||||+++.+.+.+.+ ..|.|.....++
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~   40 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPI   40 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCc
Confidence            7889999999999999998888764 467776655443

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=98.10  E-value=4.5e-06  Score=64.35  Aligned_cols=25  Identities=36%  Similarity=0.599  Sum_probs=21.9

Q ss_pred             EEEEEcCCCCcHHHHH-HHHhcCCCC
Q 036195           19 IIGLYGVRGVGKSTLI-KQLNDMFSD   43 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl-~~i~gl~~p   43 (183)
                      .++|+|+||||||||+ +.+.|...+
T Consensus        11 kv~liG~~g~GKTtLi~~~~~~~~~~   36 (215)
T PTZ00132         11 KLILVGDGGVGKTTFVKRHLTGEFEK   36 (215)
T ss_pred             eEEEECCCCCCHHHHHHHHHhCCCCC
Confidence            5899999999999999 688888754

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=98.10  E-value=3.5e-06  Score=66.09  Aligned_cols=40  Identities=15%  Similarity=0.052  Sum_probs=34.3

Q ss_pred             ecCccEEEEEcCCCCcHHHH-HHHHhcCCCCCCcEEEEEec
Q 036195           14 DDGVKIIGLYGVRGVGKSTL-IKQLNDMFSDMSHKFAIYAV   53 (183)
Q Consensus        14 i~~Ge~~~liGpNGaGKSTL-l~~i~gl~~p~~G~I~~~g~   53 (183)
                      +++|+++.|+|||||||||| +++++++.++....+++...
T Consensus        21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e   61 (230)
T PRK08533         21 IPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQ   61 (230)
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence            78999999999999999999 79999988776666666643

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=98.09  E-value=2.8e-06  Score=63.74  Aligned_cols=36  Identities=19%  Similarity=0.244  Sum_probs=30.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCCCCCC---cEEEEEec
Q 036195           18 KIIGLYGVRGVGKSTLIKQLNDMFSDMS---HKFAIYAV   53 (183)
Q Consensus        18 e~~~liGpNGaGKSTLl~~i~gl~~p~~---G~I~~~g~   53 (183)
                      -+++|+|++|||||||++.|...+.+..   |.|...+.
T Consensus         7 ~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~~~~   45 (173)
T PRK10751          7 PLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH   45 (173)
T ss_pred             eEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEEcCC
Confidence            4899999999999999999999987644   78877554

>PLN02165 adenylate isopentenyltransferase

Probab=98.09  E-value=3e-06  Score=69.58  Aligned_cols=42  Identities=26%  Similarity=0.312  Sum_probs=34.6

Q ss_pred             cCccEEEEEcCCCCcHHHHHHHHhcCCC---CCCcEEE-EEecCcc
Q 036195           15 DGVKIIGLYGVRGVGKSTLIKQLNDMFS---DMSHKFA-IYAVSLQ   56 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~~---p~~G~I~-~~g~~~~   56 (183)
                      .+|++++|+||+|||||||...|++.+.   .+.+++. +.|.++.
T Consensus        41 ~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~QvYkgldIg   86 (334)
T PLN02165         41 CKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKIT   86 (334)
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChheeECCcccc
Confidence            6788999999999999999999999975   4567773 4666654

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=98.07  E-value=4.1e-06  Score=69.39  Aligned_cols=39  Identities=26%  Similarity=0.240  Sum_probs=35.5

Q ss_pred             ecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEe
Q 036195           14 DDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYA   52 (183)
Q Consensus        14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g   52 (183)
                      +..+..+.|.||.|||||||+++|++.+++..+.+.+.+
T Consensus       159 v~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd  197 (344)
T PRK13851        159 VVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIED  197 (344)
T ss_pred             HHcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECC
Confidence            677889999999999999999999999999888888765

>PRK07429 phosphoribulokinase; Provisional

Probab=98.05  E-value=4.8e-06  Score=68.54  Aligned_cols=31  Identities=26%  Similarity=0.558  Sum_probs=28.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCcEEE
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMFSDMSHKFA   49 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~   49 (183)
                      ++||.|+|||||||+.+.|++++.+..+.+.
T Consensus        10 IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi   40 (327)
T PRK07429         10 LLGVAGDSGCGKTTFLRGLADLLGEELVTVI   40 (327)
T ss_pred             EEEEECCCCCCHHHHHHHHHhHhccCceEEE
Confidence            8999999999999999999999988876544

>PRK06936 type III secretion system ATPase; Provisional

Probab=98.02  E-value=5.6e-06  Score=70.37  Aligned_cols=38  Identities=21%  Similarity=0.204  Sum_probs=33.4

Q ss_pred             ccccc-eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCC
Q 036195            8 HLRYI-EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMS   45 (183)
Q Consensus         8 ~l~~l-~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~   45 (183)
                      +++.+ ++.+|+.++|+|+||+|||||+++|++...++-
T Consensus       152 vid~l~~i~~Gq~~~I~G~sG~GKStLl~~Ia~~~~~dv  190 (439)
T PRK06936        152 VIDGLLTCGEGQRMGIFAAAGGGKSTLLASLIRSAEVDV  190 (439)
T ss_pred             eeeeeEEecCCCEEEEECCCCCChHHHHHHHhcCCCCCE
Confidence            45544 589999999999999999999999999998864

>PRK05541 adenylylsulfate kinase; Provisional

Probab=98.02  E-value=4.3e-06  Score=62.59  Aligned_cols=42  Identities=24%  Similarity=0.313  Sum_probs=34.9

Q ss_pred             ecCccEEEEEcCCCCcHHHHHHHHhcCCC-CCCcEEEEEecCc
Q 036195           14 DDGVKIIGLYGVRGVGKSTLIKQLNDMFS-DMSHKFAIYAVSL   55 (183)
Q Consensus        14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~~-p~~G~I~~~g~~~   55 (183)
                      ..+|.++.+.|++||||||+.+.|+..+. +..|.+.+++..+
T Consensus         4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~   46 (176)
T PRK05541          4 KPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDEL   46 (176)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHH
Confidence            46889999999999999999999988774 5567788877554

>smart00053 DYNc Dynamin, GTPase

Probab=98.02  E-value=5e-06  Score=65.57  Aligned_cols=32  Identities=19%  Similarity=0.235  Sum_probs=27.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC--CCCCCcEEEE
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDM--FSDMSHKFAI   50 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl--~~p~~G~I~~   50 (183)
                      .++++|++||||||++++|+|+  .+..+|.++-
T Consensus        28 ~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~   61 (240)
T smart00053       28 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTR   61 (240)
T ss_pred             eEEEEcCCCccHHHHHHHHhCCCccccCCCcccc
Confidence            5889999999999999999998  5556777753

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=98.00  E-value=6.5e-06  Score=59.12  Aligned_cols=30  Identities=30%  Similarity=0.253  Sum_probs=27.4

Q ss_pred             ecCccEEEEEcCCCCcHHHHHHHHhcCCCC
Q 036195           14 DDGVKIIGLYGVRGVGKSTLIKQLNDMFSD   43 (183)
Q Consensus        14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p   43 (183)
                      +.+|.+++|.|+.|||||||.|.++..+..
T Consensus        19 l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~   48 (133)
T TIGR00150        19 LDFGTVVLLKGDLGAGKTTLVQGLLQGLGI   48 (133)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence            578999999999999999999999988753

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=98.00  E-value=3e-06  Score=63.61  Aligned_cols=82  Identities=7%  Similarity=-0.092  Sum_probs=51.3

Q ss_pred             cCCCCccCCCCCCCChhhhh-------ee-----cCchhhc--cccc-ccC---cccccccccceeecCcccccCCCCCC
Q 036195           97 HGCPSLRKLPFSLESGKRNG-------VL-----IGEEEWW--NQLE-WDD---EATKHVFSSKLIITTPQTVISIPQPS  158 (183)
Q Consensus        97 l~L~~L~~~~~~~LSgGqk~-------~i-----~~~~~w~--~~l~-~~d---~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (183)
                      .+...+.+.++..+|+|+.+       .+     ..+++.+  |.+. ..|   ...+..+..++..++.+ .+.+++++
T Consensus        59 ~g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~-g~tvi~v~  137 (187)
T cd01124          59 EGLLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRF-GVTTLLTS  137 (187)
T ss_pred             cCCeEEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHC-CCEEEEEe
Confidence            34445566777778887643       11     2334442  3322 223   44455566666666555 77889999


Q ss_pred             ceeee---------eecccceEEEEeeCCC
Q 036195          159 YTYEA---------TIRPRYELICIDVDDT  179 (183)
Q Consensus       159 ~~~~~---------~~~~~~~~~~~~~~~~  179 (183)
                      |+...         +...+|.+|+++.+..
T Consensus       138 ~~~~~~~~~~~~~~~~~~aD~ii~l~~~~~  167 (187)
T cd01124         138 EQSGLEGTGFGGGDVEYLVDGVIRLRLDEE  167 (187)
T ss_pred             ccccCCCcccCcCceeEeeeEEEEEEEEcc
Confidence            98875         6789999999997743

A related protein is found in archaea.

>TIGR00017 cmk cytidylate kinase

Probab=98.00  E-value=3.6e-06  Score=65.45  Aligned_cols=31  Identities=32%  Similarity=0.306  Sum_probs=27.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHh---cCCCCCCcEEE
Q 036195           19 IIGLYGVRGVGKSTLIKQLN---DMFSDMSHKFA   49 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~---gl~~p~~G~I~   49 (183)
                      +++|.||+||||||+.+.|+   |+..+++|.++
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~   37 (217)
T TIGR00017         4 IIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMY   37 (217)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCceeeCchHH
Confidence            68999999999999999999   66668888774

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=97.99  E-value=5e-06  Score=68.96  Aligned_cols=44  Identities=18%  Similarity=0.234  Sum_probs=34.6

Q ss_pred             cceecCccEEEEEcCCCCcHHHHHHHHhcCCC-CCCcEEEEEecC
Q 036195           11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFS-DMSHKFAIYAVS   54 (183)
Q Consensus        11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~-p~~G~I~~~g~~   54 (183)
                      .+-..++..+.|.||+||||||+++.+.+.+. +..+.|.....+
T Consensus       116 ~~~~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp  160 (343)
T TIGR01420       116 ELAERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDP  160 (343)
T ss_pred             HHHhhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCC
Confidence            34456788999999999999999999998665 456777665543

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.99  E-value=4.2e-06  Score=69.88  Aligned_cols=31  Identities=26%  Similarity=0.288  Sum_probs=27.4

Q ss_pred             ceecCccEEEEEcCCCCcHHHHHHHHhcCCC
Q 036195           12 IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFS   42 (183)
Q Consensus        12 l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~   42 (183)
                      +.+++|++++++||||+||||++..|++...
T Consensus       132 ~~~~~g~ii~lvGptGvGKTTtiakLA~~~~  162 (374)
T PRK14722        132 ALMERGGVFALMGPTGVGKTTTTAKLAARCV  162 (374)
T ss_pred             ccccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3478999999999999999999999998653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	183
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-10
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	3e-05
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	4e-05
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	4e-05
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	5e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.4 bits (135), Expect = 7e-10
 Identities = 26/179 (14%), Positives = 62/179 (34%), Gaps = 31/179 (17%)

Query: 2   LHLYRPH----LRY--IEDDGVKIIGLYGVRGVGKSTLIKQ-LNDMFSDMSHKFAIYAVS 54
            ++ R      LR   +E    K + + GV G GK+ +               F I+ ++
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188

Query: 55  LQKKISVCSFILIRRAYFFKLPNLKSICHEALAFPCLERIYVHGCPSLRKLPFSLESGK- 113
           L+   S  + + +          L+ + ++      ++  +         +   + S + 
Sbjct: 189 LKNCNSPETVLEM----------LQKLLYQ------IDPNWTSRSDHSSNIKLRIHSIQA 232

Query: 114 RNGVLIGEEEWWNQLE-----WDDEATKHV-FSSKLIITT-PQTVISIPQPSYTYEATI 165
               L+  + + N L       + +A      S K+++TT  + V      + T   ++
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 3nxs_A* 3tk1_A* Length = 355

 Score = 42.2 bits (99), Expect = 3e-05
 Identities = 15/35 (42%), Positives = 21/35 (60%)

Query: 19  IIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAV 53
            +G+ GV GVGKST I+ L     +  H+ A+ AV
Sbjct: 81  RVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAV 115

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} Length = 349

 Score = 42.2 bits (99), Expect = 4e-05
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 19  IIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAV 53
            +GL G  G GKST I+    M ++  HK ++ AV
Sbjct: 76  RVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAV 110

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 Length = 341

 Score = 41.7 bits (98), Expect = 4e-05
 Identities = 11/35 (31%), Positives = 17/35 (48%)

Query: 19 IIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAV 53
           +G+ G  G GKST ++    +      K A+ AV
Sbjct: 58 RLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAV 92

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* Length = 337

 Score = 41.7 bits (98), Expect = 5e-05
 Identities = 16/35 (45%), Positives = 21/35 (60%)

Query: 19 IIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAV 53
           +G+ GV GVGKST I  L  + +   HK A+ AV
Sbjct: 57 RVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAV 91

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	183
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	99.97
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	99.97
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	99.97
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	99.97
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	99.97
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	99.97
1g6h_A	257	High-affinity branched-chain amino acid transport	99.97
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	99.97
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	99.97
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	99.97
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	99.97
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	99.97
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	99.97
1b0u_A	262	Histidine permease; ABC transporter, transport pro	99.97
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	99.96
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	99.96
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	99.96
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	99.96
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	99.96
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	99.96
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	99.96
1ji0_A	240	ABC transporter; ATP binding protein, structural g	99.96
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	99.96
1sgw_A	214	Putative ABC transporter; structural genomics, P p	99.96
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	99.96
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	99.96
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	99.96
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	99.95
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	99.95
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	99.95
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	99.95
2ghi_A	260	Transport protein; multidrug resistance protein, M	99.94
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.94
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	99.94
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	99.94
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	99.93
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.93
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.92
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	99.92
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.92
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.92
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.91
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	99.91
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	99.91
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	99.91
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	99.91
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.91
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.9
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.9
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.9
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.9
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.87
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.87
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.85
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.84
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.83
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.83
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.81
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.77
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	99.76
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	99.75
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.71
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.7
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.68
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.68
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.67
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.67
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	99.65
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	99.65
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	99.64
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.63
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.63
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	99.62
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	99.58
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	99.56
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	99.55
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	99.54
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	99.53
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	99.53
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.51
1e69_A	322	Chromosome segregation SMC protein; structural mai	99.51
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	99.49
2og2_A	359	Putative signal recognition particle receptor; nuc	99.48
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.46
2eyu_A	261	Twitching motility protein PILT; pilus retraction	99.39
4a74_A	231	DNA repair and recombination protein RADA; hydrola	99.35
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	99.32
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	99.32
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	99.3
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	99.29
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	99.28
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	99.28
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	99.25
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.23
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	99.22
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	99.22
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	99.22
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	99.21
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	99.19
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	99.18
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	99.17
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	99.16
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.16
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	99.16
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	99.15
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	99.15
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	99.15
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.14
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	99.13
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	99.13
2ewv_A	372	Twitching motility protein PILT; pilus retraction	99.09
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	99.08
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	99.08
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	99.08
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	99.07
1p9r_A	418	General secretion pathway protein E; bacterial typ	99.07
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	99.05
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	99.03
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	99.03
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	99.02
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	98.97
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	98.95
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	98.95
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.94
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	98.93
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	98.88
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	98.85
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	98.85
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	98.84
3kta_A	182	Chromosome segregation protein SMC; structural mai	98.84
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	98.84
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	98.82
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.82
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	98.81
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	98.8
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.8
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	98.77
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	98.77
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	98.77
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	98.76
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	98.75
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	98.73
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	98.72
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	98.7
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	98.69
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	98.68
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	98.68
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	98.68
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.66
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	98.66
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	98.65
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	98.62
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	98.61
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	98.58
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	98.58
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	98.56
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	98.56
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	98.55
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	98.55
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	98.54
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	98.53
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	98.51
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	98.49
2cvh_A	220	DNA repair and recombination protein RADB; filamen	98.47
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	98.46
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	98.46
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	98.45
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	98.45
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	98.45
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	98.44
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	98.41
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	98.39
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	98.37
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	98.33
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	98.31
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	98.3
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	98.27
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	98.25
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	98.22
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	98.21
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	98.21
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	98.19
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	98.19
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.16
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	98.14
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	98.1
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	98.09
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	98.07
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	98.07
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	98.04
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	98.04
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	98.04
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	98.03
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	97.99
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.99
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	97.97
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	97.96
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	97.96
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.9
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	97.89
2wji_A	165	Ferrous iron transport protein B homolog; membrane	97.89
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.87
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	97.87
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	97.86
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.86
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	97.85
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.84
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	97.82
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	97.81
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.78
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	97.78
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	97.77
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	97.77
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.76
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	97.76
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	97.74
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	97.74
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	97.74
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	97.71
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	97.7
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	97.7
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.68
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	97.68
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	97.67
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	97.64
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.61
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	97.6
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	97.59
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.58
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	97.57
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.57
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.56
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.56
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.56
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	97.55
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	97.55
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.54
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.54
3ice_A	422	Transcription termination factor RHO; transcriptio	97.52
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	97.52
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.51
1via_A	175	Shikimate kinase; structural genomics, transferase	97.5
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.48
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	97.48
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	97.46
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.45
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.45
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.43
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.42
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.42
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.41
2r6a_A	454	DNAB helicase, replicative helicase; replication,	97.41
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.4
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	97.39
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.38
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.37
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	97.35
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.35
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.32
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	97.31
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.3
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	97.29
2ged_A	193	SR-beta, signal recognition particle receptor beta	97.26
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	97.26
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	97.25
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	97.25
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	97.24
2vli_A	183	Antibiotic resistance protein; transferase, tunica	97.23
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	97.23
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.22
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	97.22
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	97.21
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	97.21
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	97.21
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	97.21
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.2
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	97.2
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	97.2
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	97.19
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	97.19
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	97.19
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	97.18
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	97.18
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	97.18
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	97.17
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	97.16
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	97.16
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	97.15
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	97.15
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	97.15
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.15
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	97.15
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.15
3kta_B	173	Chromosome segregation protein SMC; structural mai	97.15
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	97.15
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	97.15
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.14
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	97.14
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	97.14
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	97.14
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	97.13
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	97.13
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	97.12
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	97.12
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	97.12
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	97.12
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	97.11
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	97.11
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	97.11
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	97.11
3bos_A	242	Putative DNA replication factor; P-loop containing	97.1
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	97.1
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	97.1
2z43_A	324	DNA repair and recombination protein RADA; archaea	97.1
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	97.09
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	97.08
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	97.07
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	97.07
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	97.06
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	97.06
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	97.06
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	97.06
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	97.06
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	97.05
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	97.05
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	97.05
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	97.04
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	97.03
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	97.03
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	97.02
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	97.02
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	97.01
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	97.01
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	97.01
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	97.01
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.01
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	97.0
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	97.0
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	96.99
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	96.99
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	96.99
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	96.98
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	96.98
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	96.97
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	96.97
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	96.97
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.96
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	96.96
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	96.96
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	96.95
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	96.95
1nrj_B	218	SR-beta, signal recognition particle receptor beta	96.94
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	96.94
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	96.94
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	96.94
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	96.94
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	96.93
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.93
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.92
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	96.92
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.92
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	96.92
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	96.91
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	96.9
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.9
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	96.9
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	96.9
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	96.9
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.89
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	96.88
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.88
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	96.87
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	96.87
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	96.87
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	96.87
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	96.87
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	96.86
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	96.86
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	96.86
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	96.86
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	96.86
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	96.85
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	96.85
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	96.85
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	96.85
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.85
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	96.85
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	96.83
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	96.83
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	96.83
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	96.83
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	96.83
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	96.82
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	96.82
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.82
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	96.81
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	96.81
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	96.81
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	96.8
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	96.8
3llu_A	196	RAS-related GTP-binding protein C; structural geno	96.8
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	96.8
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	96.78
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	96.78
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	96.77
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	96.77
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	96.76
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	96.76
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	96.75
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	96.75
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	96.74
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.72
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	96.72
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	96.72
2fh5_B	214	SR-beta, signal recognition particle receptor beta	96.72
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.71
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	96.71
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.7
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	96.7
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	96.7
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.69
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.69
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	96.69
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.69
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	96.68
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	96.68
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	96.68
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	96.67
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	96.67
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	96.66
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.66
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	96.65
2hf9_A	226	Probable hydrogenase nickel incorporation protein	96.65
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	96.64
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	96.6
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	96.6
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	96.59
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	96.58
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	96.58
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	96.57
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	96.56
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	96.55
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	96.53
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	96.52
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.52
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	96.51
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.5
1u94_A	356	RECA protein, recombinase A; homologous recombinat	96.5
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	96.49
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	96.48
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	96.48
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	96.45
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	96.45
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	96.45
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	96.43
3l0o_A	427	Transcription termination factor RHO; helicase, RH	96.43
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	96.41
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	96.39
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.39
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	96.39
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	96.35
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	96.35
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	96.34
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	96.31
1wxq_A	397	GTP-binding protein; structural genomics, riken st	96.3
2ck3_D	482	ATP synthase subunit beta\, mitochondrial; hydrola	96.27
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.24
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.22
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	96.2
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	96.2
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	96.18
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	96.16
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	96.15
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	96.13
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	95.11
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	96.06
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	96.06
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.05
2qgz_A	308	Helicase loader, putative primosome component; str	96.04
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	96.04
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	96.04
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.03
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	95.99
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	95.98
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	95.97
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	95.95
1fx0_B	498	ATP synthase beta chain; latent ATPase, thermal st	95.95
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	95.94
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	95.94
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	95.91
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	95.91
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	95.89
3pvs_A	447	Replication-associated recombination protein A; ma	95.88
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	95.87
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	95.86
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	95.83
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	95.83
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	95.82
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	95.82
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	95.81

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=99.97  E-value=3.6e-33  Score=229.58  Aligned_cols=167  Identities=16%  Similarity=0.086  Sum_probs=131.7

Q ss_pred             ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|+  ||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++.......  +. ....+++++|...++.
T Consensus        17 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~--~~-~~r~ig~vfQ~~~l~p   93 (359)
T 3fvq_A           17 TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNL--PV-RERRLGYLVQEGVLFP   93 (359)
T ss_dssp             EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBC--CG-GGSCCEEECTTCCCCT
T ss_pred             EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECccccccc--ch-hhCCEEEEeCCCcCCC
Confidence            46787  4569999999999999999999999999999999999999998773210000  00 0123444444333332


Q ss_pred             cc-------------------cchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195           84 EA-------------------LAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT  135 (183)
Q Consensus        84 ~~-------------------~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~  135 (183)
                      ..                   ....+.++++.+++..+.++++.+|||||+|+      ++.+|+.+   ||+..-|+..
T Consensus        94 ~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~  173 (359)
T 3fvq_A           94 HLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQL  173 (359)
T ss_dssp             TSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHH
T ss_pred             CCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence            11                   11246788999999999999999999999983      47888887   9999999999


Q ss_pred             ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+...+..+..+...+++++|||++++++.||||++++
T Consensus       174 r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~  213 (359)
T 3fvq_A          174 RRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMK  213 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEE
T ss_pred             HHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEE
Confidence            9999887776666668999999999999999999999986

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=99.97  E-value=3e-33  Score=222.29  Aligned_cols=165  Identities=12%  Similarity=0.087  Sum_probs=129.9

Q ss_pred             ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccc-
Q 036195            6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSIC-   82 (183)
Q Consensus         6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~-   82 (183)
                      +++|+  ||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++.....    .. ....++++++...++ 
T Consensus        24 ~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~----~~-~~~~i~~v~q~~~~~~   98 (266)
T 4g1u_C           24 QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQP----KA-LARTRAVMRQYSELAF   98 (266)
T ss_dssp             EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCH----HH-HHHHEEEECSCCCCCS
T ss_pred             eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCH----HH-HhheEEEEecCCccCC
Confidence            46787  45699999999999999999999999999999999999999987653210    00 001123333321111 


Q ss_pred             ----------------ccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecC------chhhc---cccccc
Q 036195           83 ----------------HEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIG------EEEWW---NQLEWD  131 (183)
Q Consensus        83 ----------------~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~------~~~w~---~~l~~~  131 (183)
                                      .........++++.+++..+.++++.+|||||+|+      ++.      +|+++   ||...-
T Consensus        99 ~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~L  178 (266)
T 4g1u_C           99 PFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSAL  178 (266)
T ss_dssp             CCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSC
T ss_pred             CCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccC
Confidence                            01112346788999999999999999999999983      355      88887   999999


Q ss_pred             CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      |+..+..+..++..+..+...+++++|||++++.+.||||++++
T Consensus       179 D~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~  222 (266)
T 4g1u_C          179 DLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLA  222 (266)
T ss_dssp             CHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEE
T ss_pred             CHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEE
Confidence            99999999999988877666899999999999999999999996

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=99.97  E-value=5.2e-33  Score=228.86  Aligned_cols=167  Identities=16%  Similarity=0.045  Sum_probs=135.1

Q ss_pred             cccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195            7 PHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE   84 (183)
Q Consensus         7 ~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~   84 (183)
                      ++|+  ||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++...... .... ....+++++|...++..
T Consensus        42 ~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~-~~~~-~r~~Ig~v~Q~~~l~~~  119 (366)
T 3tui_C           42 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSES-ELTK-ARRQIGMIFQHFNLLSS  119 (366)
T ss_dssp             EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHH-HHHH-HHTTEEEECSSCCCCTT
T ss_pred             EEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHH-HHHH-HhCcEEEEeCCCccCCC
Confidence            5787  456999999999999999999999999999999999999999987542100 0000 01245666665443332


Q ss_pred             cc-------------------chHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccc
Q 036195           85 AL-------------------AFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATK  136 (183)
Q Consensus        85 ~~-------------------~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~  136 (183)
                      ..                   ...+.++++.+++..+.++++.+|||||||+      ++.+|+.+   ||....|+.++
T Consensus       120 ~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~  199 (366)
T 3tui_C          120 RTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATT  199 (366)
T ss_dssp             SCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHH
T ss_pred             CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHH
Confidence            11                   1135678999999999999999999999983      47889987   89999999999


Q ss_pred             cccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          137 HVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ..+..++..+..+...+|+++|||++++.+.||||++++
T Consensus       200 ~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~  238 (366)
T 3tui_C          200 RSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVIS  238 (366)
T ss_dssp             HHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEE
Confidence            999999998887778999999999999999999999997

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=99.97  E-value=1.1e-32  Score=228.20  Aligned_cols=163  Identities=12%  Similarity=0.012  Sum_probs=134.2

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      .++|++  |++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++....     +  ....+++++|...++.
T Consensus        16 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~-----~--~~r~ig~VfQ~~~l~p   88 (381)
T 3rlf_A           16 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTP-----P--AERGVGMVFQSYALYP   88 (381)
T ss_dssp             EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCC-----G--GGSCEEEECTTCCCCT
T ss_pred             EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCC-----H--HHCCEEEEecCCcCCC
Confidence            457774  568999999999999999999999999999999999999998875321     0  0123455555444433


Q ss_pred             ccc-------------------chHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195           84 EAL-------------------AFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT  135 (183)
Q Consensus        84 ~~~-------------------~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~  135 (183)
                      ...                   ...+.++++.+++..+.++++.+|||||+|+      ++.+|+.+   ||+...|+..
T Consensus        89 ~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~  168 (381)
T 3rlf_A           89 HLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAAL  168 (381)
T ss_dssp             TSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHH
T ss_pred             CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHH
Confidence            211                   1235678999999999999999999999983      47788886   9999999999


Q ss_pred             ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+...+..+..+...+++++|||++++++.||||++++
T Consensus       169 ~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~  208 (381)
T 3rlf_A          169 RVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLD  208 (381)
T ss_dssp             HHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred             HHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEE
Confidence            9999999999888879999999999999999999999986

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=99.97  E-value=1.8e-32  Score=214.24  Aligned_cols=167  Identities=13%  Similarity=0.011  Sum_probs=127.9

Q ss_pred             ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195            7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE   84 (183)
Q Consensus         7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~   84 (183)
                      ++|++  |++++||++||+||||||||||+|+|+|+++|++|+|.++|.++...... .........+++++|...++..
T Consensus        19 ~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~-~~~~~~~~~i~~v~Q~~~l~~~   97 (235)
T 3tif_A           19 YALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDD-ELTKIRRDKIGFVFQQFNLIPL   97 (235)
T ss_dssp             EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHH-HHHHHHHHHEEEECTTCCCCTT
T ss_pred             eeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHH-HHHHHhhccEEEEecCCccCCC
Confidence            57884  56999999999999999999999999999999999999999876432100 0000011224444443322211


Q ss_pred             ----------------------ccchHHHHHHHHcCCCCc-cCCCCCCCChhhhhe------ecCchhhc---ccccccC
Q 036195           85 ----------------------ALAFPCLERIYVHGCPSL-RKLPFSLESGKRNGV------LIGEEEWW---NQLEWDD  132 (183)
Q Consensus        85 ----------------------~~~~~~l~vLe~l~L~~L-~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d  132 (183)
                                            .....+.++++.+++.+. .++++.+|||||+|+      ++.+|+.+   ||...-|
T Consensus        98 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD  177 (235)
T 3tif_A           98 LTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALD  177 (235)
T ss_dssp             SCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSC
T ss_pred             CcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence                                  011235678889999875 599999999999983      47788887   9999999


Q ss_pred             cccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          133 EATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+..+..++..+..+...+++++|||++. .+.||++++++
T Consensus       178 ~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~-~~~~d~i~~l~  219 (235)
T 3tif_A          178 SKTGEKIMQLLKKLNEEDGKTVVVVTHDINV-ARFGERIIYLK  219 (235)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCEEEEECSCHHH-HTTSSEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHcCCEEEEEcCCHHH-HHhCCEEEEEE
Confidence            9999999999988876668999999999995 58999999996

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=99.97  E-value=2.7e-32  Score=224.84  Aligned_cols=163  Identities=14%  Similarity=0.028  Sum_probs=133.2

Q ss_pred             ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|+  ||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++....     +  ....+++++|...++.
T Consensus        16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~-----~--~~r~ig~v~Q~~~l~~   88 (362)
T 2it1_A           16 FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELP-----P--KDRNVGLVFQNWALYP   88 (362)
T ss_dssp             SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC-----G--GGTTEEEECTTCCCCT
T ss_pred             EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCC-----H--hHCcEEEEecCcccCC
Confidence            35777  4568999999999999999999999999999999999999998775320     0  0123555555443332


Q ss_pred             ccc-------------------chHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195           84 EAL-------------------AFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT  135 (183)
Q Consensus        84 ~~~-------------------~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~  135 (183)
                      ...                   ...+.++++.+++..+.++++.+|||||+|+      +..+|+.+   ||+...|+..
T Consensus        89 ~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~  168 (362)
T 2it1_A           89 HMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALL  168 (362)
T ss_dssp             TSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHH
T ss_pred             CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHH
Confidence            211                   1235678999999999999999999999983      47888887   9999999999


Q ss_pred             ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+...+..+..+...+++++|||++++++.||++++++
T Consensus       169 r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~  208 (362)
T 2it1_A          169 RLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIR  208 (362)
T ss_dssp             HHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEE
T ss_pred             HHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEE
Confidence            9999999998877778899999999999999999999986

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=99.97  E-value=4e-32  Score=214.79  Aligned_cols=165  Identities=12%  Similarity=0.034  Sum_probs=127.9

Q ss_pred             ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccc-
Q 036195            6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSIC-   82 (183)
Q Consensus         6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~-   82 (183)
                      +++|+  ||++++||++||+||||||||||+|+|+|+++|++|+|.++|.++.....    .......+++++|...++ 
T Consensus        20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~----~~~~~~~i~~v~q~~~l~~   95 (257)
T 1g6h_A           20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEP----AELYHYGIVRTFQTPQPLK   95 (257)
T ss_dssp             EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCH----HHHHHHTEEECCCCCGGGG
T ss_pred             EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH----HHHHhCCEEEEccCCccCC
Confidence            35787  55699999999999999999999999999999999999999987642100    000001122222211110 


Q ss_pred             -------------------------------ccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc
Q 036195           83 -------------------------------HEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW  125 (183)
Q Consensus        83 -------------------------------~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~  125 (183)
                                                     .......+.++++.+++..+.++++.+|||||+|+      ++.+|+.+
T Consensus        96 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~ll  175 (257)
T 1g6h_A           96 EMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMI  175 (257)
T ss_dssp             GSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEE
T ss_pred             CCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCCCEE
Confidence                                           00011245678999999999999999999999983      37888887


Q ss_pred             ---ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          126 ---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       126 ---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                         ||+..-|+..+..+..++..+..+ ..+|+++|||++.+.+.||++++++
T Consensus       176 lLDEPts~LD~~~~~~l~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~l~  227 (257)
T 1g6h_A          176 VMDEPIAGVAPGLAHDIFNHVLELKAK-GITFLIIEHRLDIVLNYIDHLYVMF  227 (257)
T ss_dssp             EEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCSTTGGGCSEEEEEE
T ss_pred             EEeCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEEEE
Confidence               999999999999999999888655 8899999999999999999999986

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=99.97  E-value=4.4e-32  Score=210.59  Aligned_cols=167  Identities=14%  Similarity=-0.003  Sum_probs=129.6

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|++  |++++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...... .........++++++...++.
T Consensus        17 ~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~-~~~~~~~~~i~~v~q~~~l~~   95 (224)
T 2pcj_A           17 YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEK-ELSLLRNRKLGFVFQFHYLIP   95 (224)
T ss_dssp             EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHH-HHHHHHHHHEEEECSSCCCCT
T ss_pred             EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHH-HHHHHHhCcEEEEecCcccCC
Confidence            467874  56899999999999999999999999999999999999999876431000 000001123555555433322


Q ss_pred             cc-------------------cchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195           84 EA-------------------LAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT  135 (183)
Q Consensus        84 ~~-------------------~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~  135 (183)
                      ..                   ....+.++++.+++..+.++++.+|||||+|+      +..+|+.+   ||+..-|+..
T Consensus        96 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~  175 (224)
T 2pcj_A           96 ELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSAN  175 (224)
T ss_dssp             TSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHH
T ss_pred             CCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHH
Confidence            10                   01234678899999999999999999999983      47888887   9999999999


Q ss_pred             ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+..++..+..+ ..+++++|||++.+ +.||++++++
T Consensus       176 ~~~~~~~l~~l~~~-g~tvi~vtHd~~~~-~~~d~v~~l~  213 (224)
T 2pcj_A          176 TKRVMDIFLKINEG-GTSIVMVTHERELA-ELTHRTLEMK  213 (224)
T ss_dssp             HHHHHHHHHHHHHT-TCEEEEECSCHHHH-TTSSEEEEEE
T ss_pred             HHHHHHHHHHHHHC-CCEEEEEcCCHHHH-HhCCEEEEEE
Confidence            99999999888666 88999999999987 8999999986

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=99.97  E-value=2.2e-32  Score=218.13  Aligned_cols=166  Identities=13%  Similarity=0.067  Sum_probs=129.7

Q ss_pred             ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc--ccc
Q 036195            7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK--SIC   82 (183)
Q Consensus         7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~--~l~   82 (183)
                      ++|++  |+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.....  .... ....+++++|..  .++
T Consensus        22 ~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~--~~~~-~~~~ig~v~Q~~~~~~~   98 (275)
T 3gfo_A           22 HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRK--GIMK-LRESIGIVFQDPDNQLF   98 (275)
T ss_dssp             EEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHH--HHHH-HHHSEEEECSSGGGTCC
T ss_pred             eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccc--cHHH-HhCcEEEEEcCcccccc
Confidence            47884  5699999999999999999999999999999999999999987731100  0000 012344444432  111


Q ss_pred             c------------------cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195           83 H------------------EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT  135 (183)
Q Consensus        83 ~------------------~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~  135 (183)
                      .                  ......+.++++.+++..+.++++.+|||||+|+      ++.+|+.+   ||....|+..
T Consensus        99 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~  178 (275)
T 3gfo_A           99 SASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMG  178 (275)
T ss_dssp             SSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHH
T ss_pred             cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHH
Confidence            0                  0011235678999999999999999999999983      48889887   8999999999


Q ss_pred             ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+..++..+..+...+|+++|||++++.+.||||++++
T Consensus       179 ~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~  218 (275)
T 3gfo_A          179 VSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMK  218 (275)
T ss_dssp             HHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEE
T ss_pred             HHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEE
Confidence            9999999988863338899999999999999999999996

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=99.97  E-value=3.4e-32  Score=215.81  Aligned_cols=166  Identities=13%  Similarity=0.029  Sum_probs=129.7

Q ss_pred             ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|+  ||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++... . ...... ...+++++|...++.
T Consensus        37 ~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~-~-~~~~~~-~~~i~~v~Q~~~l~~  113 (263)
T 2olj_A           37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAK-D-TNLNKV-REEVGMVFQRFNLFP  113 (263)
T ss_dssp             EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSST-T-CCHHHH-HHHEEEECSSCCCCT
T ss_pred             EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCc-c-ccHHHH-hCcEEEEeCCCcCCC
Confidence            45787  456899999999999999999999999999999999999999876300 0 000000 122444444322221


Q ss_pred             c--------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcc
Q 036195           84 E--------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEA  134 (183)
Q Consensus        84 ~--------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~  134 (183)
                      .                    .....+.++++.+++..+.++++.+|||||+|+      +..+|+.+   ||+..-|+.
T Consensus       114 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~  193 (263)
T 2olj_A          114 HMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPE  193 (263)
T ss_dssp             TSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHH
T ss_pred             CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHH
Confidence            1                    001235678999999999999999999999983      47888887   999999999


Q ss_pred             cccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          135 TKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      .+..+..++..+..+ ..+|+++|||++.+.+.||++++++
T Consensus       194 ~~~~~~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~l~  233 (263)
T 2olj_A          194 MVGEVLSVMKQLANE-GMTMVVVTHEMGFAREVGDRVLFMD  233 (263)
T ss_dssp             HHHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred             HHHHHHHHHHHHHhC-CCEEEEEcCCHHHHHHhCCEEEEEE
Confidence            999999999888666 8899999999999999999999996

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=99.97  E-value=3.8e-32  Score=223.37  Aligned_cols=162  Identities=10%  Similarity=0.036  Sum_probs=131.7

Q ss_pred             cccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195            7 PHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE   84 (183)
Q Consensus         7 ~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~   84 (183)
                      ++|+  ||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++....     +  ....+++++|...++..
T Consensus        29 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~-----~--~~r~ig~v~Q~~~l~~~  101 (355)
T 1z47_A           29 RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLP-----P--QKRNVGLVFQNYALFQH  101 (355)
T ss_dssp             TCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCC-----G--GGSSEEEECGGGCCCTT
T ss_pred             EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCC-----h--hhCcEEEEecCcccCCC
Confidence            5787  5568999999999999999999999999999999999999998764310     0  01234444443333221


Q ss_pred             c-------------------cchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccc
Q 036195           85 A-------------------LAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATK  136 (183)
Q Consensus        85 ~-------------------~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~  136 (183)
                      .                   ....+.++++.+++..+.++++.+|||||+|+      ++.+|+.+   ||+...|+..+
T Consensus       102 ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r  181 (355)
T 1z47_A          102 MTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIR  181 (355)
T ss_dssp             SCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHH
T ss_pred             CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence            0                   01235678999999999999999999999983      47888887   99999999999


Q ss_pred             cccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          137 HVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ..+..++..+..+...+++++|||++++++.||++++++
T Consensus       182 ~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~  220 (355)
T 1z47_A          182 RELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLH  220 (355)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred             HHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEE
Confidence            999999998877778899999999999999999999986

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=99.97  E-value=4.9e-32  Score=223.13  Aligned_cols=163  Identities=11%  Similarity=0.039  Sum_probs=132.4

Q ss_pred             ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|+  ||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++....     +  ....+++++|...++.
T Consensus        16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~-----~--~~r~ig~v~Q~~~l~~   88 (359)
T 2yyz_A           16 VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIP-----P--KYREVGMVFQNYALYP   88 (359)
T ss_dssp             EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC-----G--GGTTEEEECSSCCCCT
T ss_pred             EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCC-----h--hhCcEEEEecCcccCC
Confidence            35777  4568999999999999999999999999999999999999998764320     0  0123444444332222


Q ss_pred             c-------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195           84 E-------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT  135 (183)
Q Consensus        84 ~-------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~  135 (183)
                      .                   .....+.++++.+++..+.++++.+|||||+|+      ++.+|+.+   ||+..-|+..
T Consensus        89 ~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~  168 (359)
T 2yyz_A           89 HMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANL  168 (359)
T ss_dssp             TSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHH
T ss_pred             CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence            1                   112246788999999999999999999999983      47888887   9999999999


Q ss_pred             ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+...+..+..+...+++++|||++++++.||++++++
T Consensus       169 r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~  208 (359)
T 2yyz_A          169 RMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFN  208 (359)
T ss_dssp             HHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEE
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEE
Confidence            9999999988877778899999999999999999999986

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=99.97  E-value=6.7e-32  Score=211.54  Aligned_cols=161  Identities=14%  Similarity=0.022  Sum_probs=128.6

Q ss_pred             cccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195            7 PHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE   84 (183)
Q Consensus         7 ~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~   84 (183)
                      .+|+  ||++++ |++||+||||||||||+|+|+|+++|++|+|.++|.++....      .. ...++++++...++..
T Consensus        13 ~~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~------~~-~~~i~~v~q~~~l~~~   84 (240)
T 2onk_A           13 NFRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP------PE-RRGIGFVPQDYALFPH   84 (240)
T ss_dssp             TEEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC------TT-TSCCBCCCSSCCCCTT
T ss_pred             CEEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc------hh-hCcEEEEcCCCccCCC
Confidence            3576  456899 999999999999999999999999999999999998764210      00 1234444443322211


Q ss_pred             c-----------------cchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccc
Q 036195           85 A-----------------LAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHV  138 (183)
Q Consensus        85 ~-----------------~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~  138 (183)
                      .                 ....+.++++.+++.++.++++.+|||||+|+      ++.+|+.+   ||+..-|+..+..
T Consensus        85 ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~  164 (240)
T 2onk_A           85 LSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGV  164 (240)
T ss_dssp             SCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHH
T ss_pred             CcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence            0                 01235678999999999999999999999983      48888887   9999999999999


Q ss_pred             cccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          139 FSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..++..+..+...+|+++|||++++.+.||++++++
T Consensus       165 ~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~  201 (240)
T 2onk_A          165 LMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVML  201 (240)
T ss_dssp             HHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEE
T ss_pred             HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence            9999988766568899999999999999999999997

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=99.97  E-value=5.8e-32  Score=214.44  Aligned_cols=168  Identities=11%  Similarity=0.020  Sum_probs=130.0

Q ss_pred             ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccc---------cccccchheeehhhhcc
Q 036195            6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQK---------KISVCSFILIRRAYFFK   74 (183)
Q Consensus         6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~---------~~~~~~~~~l~~~~lg~   74 (183)
                      +++|+  ||++++||++||+||||||||||+|+|+|+++|++|+|.++|.++..         ......... ....+++
T Consensus        19 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~   97 (262)
T 1b0u_A           19 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRL-LRTRLTM   97 (262)
T ss_dssp             EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHH-HHHHEEE
T ss_pred             EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHH-HhcceEE
Confidence            46787  45689999999999999999999999999999999999999987641         000000000 0123445


Q ss_pred             CCCCccccccc--------------------cchHHHHHHHHcCCCCc-cCCCCCCCChhhhhe------ecCchhhc--
Q 036195           75 LPNLKSICHEA--------------------LAFPCLERIYVHGCPSL-RKLPFSLESGKRNGV------LIGEEEWW--  125 (183)
Q Consensus        75 lp~l~~l~~~~--------------------~~~~~l~vLe~l~L~~L-~~~~~~~LSgGqk~~------i~~~~~w~--  125 (183)
                      ++|...++...                    ....+.++++.+++..+ .++++.+|||||+|+      ++.+|+.+  
T Consensus        98 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllL  177 (262)
T 1b0u_A           98 VFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLF  177 (262)
T ss_dssp             ECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred             EecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            55433222110                    01235678999999998 999999999999983      47888887  


Q ss_pred             -ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          126 -NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       126 -~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                       ||+..-|+..+..+..++..+..+ ..+|+++|||++++.+.||++++++
T Consensus       178 DEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~l~  227 (262)
T 1b0u_A          178 DEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLH  227 (262)
T ss_dssp             ESTTTTSCHHHHHHHHHHHHHHHHT-TCCEEEECSCHHHHHHHCSEEEEEE
T ss_pred             eCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEE
Confidence             999999999999999999888666 8899999999999999999999986

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=99.96  E-value=7.5e-32  Score=222.93  Aligned_cols=162  Identities=7%  Similarity=-0.013  Sum_probs=129.4

Q ss_pred             cccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195            7 PHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE   84 (183)
Q Consensus         7 ~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~   84 (183)
                      ++|+  ||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++....     +.  ...+++++|...++..
T Consensus        25 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~-----~~--~r~ig~v~Q~~~l~~~   97 (372)
T 1v43_A           25 TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLP-----PK--DRNISMVFQSYAVWPH   97 (372)
T ss_dssp             EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC-----GG--GGTEEEEEC------C
T ss_pred             EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCC-----hh--hCcEEEEecCcccCCC
Confidence            5777  4568999999999999999999999999999999999999998764310     00  1223333333222211


Q ss_pred             -------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccc
Q 036195           85 -------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATK  136 (183)
Q Consensus        85 -------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~  136 (183)
                                         .....+.++++.+++..+.++++.+|||||+|+      ++.+|+.+   ||+...|+..+
T Consensus        98 ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r  177 (372)
T 1v43_A           98 MTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLR  177 (372)
T ss_dssp             CCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHH
T ss_pred             CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHH
Confidence                               011246788999999999999999999999983      47888887   99999999999


Q ss_pred             cccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          137 HVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ..+..++..+..+...+++++|||++++++.||++++++
T Consensus       178 ~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~  216 (372)
T 1v43_A          178 VAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMN  216 (372)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence            999999998877778899999999999999999999986

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.96  E-value=7e-32  Score=213.29  Aligned_cols=163  Identities=15%  Similarity=0.054  Sum_probs=129.4

Q ss_pred             ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|+  ||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.++....     .. ....++++++...++.
T Consensus        28 ~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~-----~~-~~~~i~~v~q~~~l~~  101 (256)
T 1vpl_A           28 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEP-----HE-VRKLISYLPEEAGAYR  101 (256)
T ss_dssp             EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCH-----HH-HHTTEEEECTTCCCCT
T ss_pred             EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccH-----HH-HhhcEEEEcCCCCCCC
Confidence            45787  4568999999999999999999999999999999999999998764310     00 0123445554332222


Q ss_pred             ccc-------------------chHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195           84 EAL-------------------AFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT  135 (183)
Q Consensus        84 ~~~-------------------~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~  135 (183)
                      ...                   ...+.++++.+++..+.++++.+|||||+|+      ++.+|+.+   ||+...|+..
T Consensus       102 ~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~  181 (256)
T 1vpl_A          102 NMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLN  181 (256)
T ss_dssp             TSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHH
T ss_pred             CCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHH
Confidence            100                   1134678899999999999999999999983      47888887   9999999999


Q ss_pred             ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+..++..+..+ ..+|+++|||++++.+.||++++++
T Consensus       182 ~~~l~~~l~~l~~~-g~tiiivtHd~~~~~~~~d~v~~l~  220 (256)
T 1vpl_A          182 AREVRKILKQASQE-GLTILVSSHNMLEVEFLCDRIALIH  220 (256)
T ss_dssp             HHHHHHHHHHHHHT-TCEEEEEECCHHHHTTTCSEEEEEE
T ss_pred             HHHHHHHHHHHHhC-CCEEEEEcCCHHHHHHHCCEEEEEE
Confidence            99999999887644 7899999999999999999999986

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=99.96  E-value=6.5e-32  Score=221.64  Aligned_cols=161  Identities=10%  Similarity=0.013  Sum_probs=132.3

Q ss_pred             ccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccccc
Q 036195            8 HLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHEA   85 (183)
Q Consensus         8 ~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~~   85 (183)
                      +|+  ||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++...      +. ....+++++|...++...
T Consensus        15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~------~~-~~r~ig~v~Q~~~l~~~l   87 (348)
T 3d31_A           15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDL------SP-EKHDIAFVYQNYSLFPHM   87 (348)
T ss_dssp             EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTS------CH-HHHTCEEECTTCCCCTTS
T ss_pred             EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCC------ch-hhCcEEEEecCcccCCCC
Confidence            777  456899999999999999999999999999999999999999876531      00 012355555544333221


Q ss_pred             c----------------chHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccc
Q 036195           86 L----------------AFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFS  140 (183)
Q Consensus        86 ~----------------~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~  140 (183)
                      .                ...+.++++.+++..+.++++.+|||||+|+      ++.+|+.+   ||+...|+..+..+.
T Consensus        88 tv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~  167 (348)
T 3d31_A           88 NVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAR  167 (348)
T ss_dssp             CHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHH
T ss_pred             CHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHH
Confidence            1                1345678999999999999999999999983      47888887   999999999999999


Q ss_pred             cceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          141 SKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      .++..+..+...+++++|||++++++.||++++++
T Consensus       168 ~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~  202 (348)
T 3d31_A          168 EMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVM  202 (348)
T ss_dssp             HHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEES
T ss_pred             HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence            99998877778899999999999999999999985

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=99.96  E-value=1.9e-31  Score=211.87  Aligned_cols=161  Identities=13%  Similarity=0.009  Sum_probs=127.7

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc--c-
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK--S-   80 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~--~-   80 (183)
                      +++|++  |++++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...       . ....++++++..  . 
T Consensus        20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~-------~-~~~~i~~v~q~~~~~~   91 (266)
T 2yz2_A           20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY-------E-IRRNIGIAFQYPEDQF   91 (266)
T ss_dssp             EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH-------H-HGGGEEEECSSGGGGC
T ss_pred             cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH-------H-hhhhEEEEeccchhhc
Confidence            457874  56899999999999999999999999999999999999999765321       0 001122222210  0 


Q ss_pred             ----------------ccccccchHHHHHHHHcCCC--CccCCCCCCCChhhhhe------ecCchhhc---ccccccCc
Q 036195           81 ----------------ICHEALAFPCLERIYVHGCP--SLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDE  133 (183)
Q Consensus        81 ----------------l~~~~~~~~~l~vLe~l~L~--~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~  133 (183)
                                      .........+.++++.+++.  ++.++++.+|||||+|+      ++.+|+.+   ||+...|+
T Consensus        92 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~  171 (266)
T 2yz2_A           92 FAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDR  171 (266)
T ss_dssp             CCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCH
T ss_pred             CCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCH
Confidence                            11111123467889999999  99999999999999983      47888887   99999999


Q ss_pred             ccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          134 ATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ..+..+..++..+..+ ..+|+++|||++.+.+.||++++++
T Consensus       172 ~~~~~l~~~l~~l~~~-g~tii~vtHd~~~~~~~~d~v~~l~  212 (266)
T 2yz2_A          172 EGKTDLLRIVEKWKTL-GKTVILISHDIETVINHVDRVVVLE  212 (266)
T ss_dssp             HHHHHHHHHHHHHHHT-TCEEEEECSCCTTTGGGCSEEEEEE
T ss_pred             HHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEE
Confidence            9999999999887666 7899999999999999999999996

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=99.96  E-value=6.5e-32  Score=222.18  Aligned_cols=166  Identities=8%  Similarity=-0.014  Sum_probs=130.9

Q ss_pred             ccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc-
Q 036195            8 HLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE-   84 (183)
Q Consensus         8 ~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~-   84 (183)
                      +|+  ||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++....... .+. ....+++++|...++.. 
T Consensus        20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~-~~~-~~r~ig~v~Q~~~l~~~l   97 (353)
T 1oxx_K           20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI-VPP-EDRKIGMVFQTWALYPNL   97 (353)
T ss_dssp             EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEES-SCG-GGSCEEEEETTSCCCTTS
T ss_pred             eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECccccccc-CCh-hhCCEEEEeCCCccCCCC
Confidence            787  4568999999999999999999999999999999999999998764310000 000 01223444443222221 


Q ss_pred             ------------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccccc
Q 036195           85 ------------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKH  137 (183)
Q Consensus        85 ------------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~  137 (183)
                                        .....+.++++.+++..+.++++.+|||||+|+      ++.+|+.+   ||+...|+..+.
T Consensus        98 tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~  177 (353)
T 1oxx_K           98 TAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRD  177 (353)
T ss_dssp             CHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHH
T ss_pred             CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHH
Confidence                              011245788999999999999999999999983      47888887   999999999999


Q ss_pred             ccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          138 VFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      .+...+..+..+...+++++|||++++++.|||+++++
T Consensus       178 ~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~  215 (353)
T 1oxx_K          178 SARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLV  215 (353)
T ss_dssp             HHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEE
T ss_pred             HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence            99999998877778999999999999999999999986

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=99.96  E-value=1.8e-31  Score=213.34  Aligned_cols=168  Identities=14%  Similarity=0.099  Sum_probs=126.4

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcc--cc--------cccc-c-----h---
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ--KK--------ISVC-S-----F---   64 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~--~~--------~~~~-~-----~---   64 (183)
                      +++|++  |++++||++||+||||||||||+|+|+|+++|++|+|.++|.++.  ..        ..+. +     +   
T Consensus        34 ~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~  113 (279)
T 2ihy_A           34 KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEG  113 (279)
T ss_dssp             EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTT
T ss_pred             EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCC
Confidence            467875  458999999999999999999999999999999999999998764  21        0000 0     0   


Q ss_pred             -heeehhhhccCCCCccccc---cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---cccccc
Q 036195           65 -ILIRRAYFFKLPNLKSICH---EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWD  131 (183)
Q Consensus        65 -~~l~~~~lg~lp~l~~l~~---~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~  131 (183)
                       ++.+.+.++..+.. .++.   ......+.++++.+++..+.++++.+|||||+|+      +..+|+.+   ||+...
T Consensus       114 ltv~enl~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~L  192 (279)
T 2ihy_A          114 ERVIDVVISGAFKSI-GVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGL  192 (279)
T ss_dssp             SBHHHHHHTTC----------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTC
T ss_pred             CCHHHHHHhhhhhcc-ccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccc
Confidence             11111111110000 0000   0111245678999999999999999999999983      47888887   999999


Q ss_pred             CcccccccccceeecCcccccCC--CCCCceeeeeecccceEEEEe
Q 036195          132 DEATKHVFSSKLIITTPQTVISI--PQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       132 d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      |+..+..+..++..+..+ ..+|  +++|||++++.+.||++++++
T Consensus       193 D~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~~~~~~~~d~v~~l~  237 (279)
T 2ihy_A          193 DFIARESLLSILDSLSDS-YPTLAMIYVTHFIEEITANFSKILLLK  237 (279)
T ss_dssp             CHHHHHHHHHHHHHHHHH-CTTCEEEEEESCGGGCCTTCCEEEEEE
T ss_pred             CHHHHHHHHHHHHHHHHC-CCEEEEEEEecCHHHHHHhCCEEEEEE
Confidence            999999999999887666 7889  999999999999999999996

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=99.96  E-value=1.2e-31  Score=221.89  Aligned_cols=169  Identities=11%  Similarity=0.014  Sum_probs=133.7

Q ss_pred             ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|+  ||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++.........+. ....+++++|...++.
T Consensus        16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~-~~r~ig~v~Q~~~l~~   94 (372)
T 1g29_1           16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP-KDRDIAMVFQSYALYP   94 (372)
T ss_dssp             EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG-GGSSEEEECSCCCCCT
T ss_pred             EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH-hHCCEEEEeCCCccCC
Confidence            35787  45689999999999999999999999999999999999999987653100000010 1134556565444433


Q ss_pred             ccc-------------------chHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195           84 EAL-------------------AFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT  135 (183)
Q Consensus        84 ~~~-------------------~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~  135 (183)
                      ...                   ...+.++++.+++..+.++++.+|||||+|+      ++.+|+.+   ||+...|+..
T Consensus        95 ~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~  174 (372)
T 1g29_1           95 HMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKL  174 (372)
T ss_dssp             TSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHH
T ss_pred             CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHH
Confidence            211                   1235678999999999999999999999983      47888887   9999999999


Q ss_pred             ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+..++..+..+...+++++|||++++++.||++++++
T Consensus       175 r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~  214 (372)
T 1g29_1          175 RVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMN  214 (372)
T ss_dssp             HHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEE
T ss_pred             HHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEe
Confidence            9999999988877778899999999999999999999986

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.96  E-value=9.6e-32  Score=210.67  Aligned_cols=165  Identities=12%  Similarity=0.020  Sum_probs=126.8

Q ss_pred             ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|+  ||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.++....    ........++++++...++.
T Consensus        19 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~----~~~~~~~~i~~v~q~~~l~~   94 (240)
T 1ji0_A           19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKP----AHVINRMGIALVPEGRRIFP   94 (240)
T ss_dssp             EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCC----HHHHHHTTEEEECSSCCCCT
T ss_pred             eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCC----HHHHHhCCEEEEecCCccCC
Confidence            45787  4568999999999999999999999999999999999999998764310    00000112344443322211


Q ss_pred             c------------------ccchHHHHHHHHc-CCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195           84 E------------------ALAFPCLERIYVH-GCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT  135 (183)
Q Consensus        84 ~------------------~~~~~~l~vLe~l-~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~  135 (183)
                      .                  .......++++.+ ++..+.++++.+|||||+|+      ++.+|+.+   ||+...|+..
T Consensus        95 ~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~  174 (240)
T 1ji0_A           95 ELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPIL  174 (240)
T ss_dssp             TSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHH
T ss_pred             CCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHH
Confidence            1                  0012345677888 48888899999999999983      47888887   9999999999


Q ss_pred             ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+..++..+.. ...+++++|||++.+.+.||++++++
T Consensus       175 ~~~l~~~l~~~~~-~g~tvi~vtHd~~~~~~~~d~v~~l~  213 (240)
T 1ji0_A          175 VSEVFEVIQKINQ-EGTTILLVEQNALGALKVAHYGYVLE  213 (240)
T ss_dssp             HHHHHHHHHHHHH-TTCCEEEEESCHHHHHHHCSEEEEEE
T ss_pred             HHHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEE
Confidence            9999999988755 47899999999999999999999986

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=99.96  E-value=2.4e-31  Score=209.44  Aligned_cols=162  Identities=15%  Similarity=0.020  Sum_probs=128.0

Q ss_pred             cccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195            7 PHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE   84 (183)
Q Consensus         7 ~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~   84 (183)
                      ++|+  ||++++||+++|+||||||||||+|+|+|+++|+ |+|.++|.++....    ... ....++++++...++..
T Consensus        14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~----~~~-~~~~i~~v~q~~~~~~~   87 (249)
T 2qi9_C           14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWS----ATK-LALHRAYLSQQQTPPFA   87 (249)
T ss_dssp             TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSC----HHH-HHHHEEEECSCCCCCTT
T ss_pred             EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCC----HHH-HhceEEEECCCCccCCC
Confidence            6777  4568999999999999999999999999999999 99999998764210    000 01123444443222111


Q ss_pred             --------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchh-------hc---ccccccCcc
Q 036195           85 --------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEE-------WW---NQLEWDDEA  134 (183)
Q Consensus        85 --------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~-------w~---~~l~~~d~~  134 (183)
                                    .......++++.+++..+.++++.+|||||+|+      ++.+|+       ++   ||....|+.
T Consensus        88 ~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~  167 (249)
T 2qi9_C           88 TPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVA  167 (249)
T ss_dssp             CBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHH
T ss_pred             CcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHH
Confidence                          012346788999999999999999999999983      377888       76   999999999


Q ss_pred             cccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          135 TKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      .+..+..++..+..+ ..+++++|||++.+.+.||++++++
T Consensus       168 ~~~~l~~~l~~l~~~-g~tviivtHd~~~~~~~~d~v~~l~  207 (249)
T 2qi9_C          168 QQSALDKILSALSQQ-GLAIVMSSHDLNHTLRHAHRAWLLK  207 (249)
T ss_dssp             HHHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred             HHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEE
Confidence            999999999887655 7899999999999999999999986

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=99.96  E-value=3e-31  Score=204.55  Aligned_cols=158  Identities=16%  Similarity=0.142  Sum_probs=126.1

Q ss_pred             ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195            7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE   84 (183)
Q Consensus         7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~   84 (183)
                      ++|++  |++++||+++|+||||||||||+|+|+|+++|++|+|.++|.++..          ....++++++...++..
T Consensus        23 ~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~----------~~~~i~~v~q~~~~~~~   92 (214)
T 1sgw_A           23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK----------VKGKIFFLPEEIIVPRK   92 (214)
T ss_dssp             EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG----------GGGGEEEECSSCCCCTT
T ss_pred             eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhh----------hcCcEEEEeCCCcCCCC
Confidence            57874  5689999999999999999999999999999999999999976530          01123333332211110


Q ss_pred             -----------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccc
Q 036195           85 -----------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHV  138 (183)
Q Consensus        85 -----------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~  138 (183)
                                       .......++++.+++..+ ++++.+|||||+|+      ++.+|+.+   ||+...|+..+..
T Consensus        93 ~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~  171 (214)
T 1sgw_A           93 ISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHK  171 (214)
T ss_dssp             SBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHH
T ss_pred             CCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHH
Confidence                             112345778999999988 99999999999983      47888887   9999999999999


Q ss_pred             cccceeecCcccccCCCCCCceeeeeecccceEEEEee
Q 036195          139 FSSKLIITTPQTVISIPQPSYTYEATIRPRYELICIDV  176 (183)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (183)
                      +..++..+..+ ..+|+++|||++.+...+|++++++-
T Consensus       172 l~~~l~~~~~~-g~tiiivtHd~~~~~~~~d~v~~~~~  208 (214)
T 1sgw_A          172 VLKSILEILKE-KGIVIISSREELSYCDVNENLHKYST  208 (214)
T ss_dssp             HHHHHHHHHHH-HSEEEEEESSCCTTSSEEEEGGGGBC
T ss_pred             HHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEeCC
Confidence            99999877654 78999999999999999999998763

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=99.96  E-value=1.1e-30  Score=205.80  Aligned_cols=165  Identities=12%  Similarity=-0.051  Sum_probs=121.8

Q ss_pred             ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcC--CCCCCcEEEEEecCccccccccchheeehhhhccCCCCccc
Q 036195            6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDM--FSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSI   81 (183)
Q Consensus         6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl--~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l   81 (183)
                      +++|+  ||++++||+++|+||||||||||+|+|+|+  ++|++|+|.++|.++....    ........+++++|...+
T Consensus        16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~----~~~~~~~~i~~v~q~~~~   91 (250)
T 2d2e_A           16 ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELS----PDERARKGLFLAFQYPVE   91 (250)
T ss_dssp             EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSC----HHHHHHTTBCCCCCCCC-
T ss_pred             EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCC----HHHHHhCcEEEeccCCcc
Confidence            46787  456899999999999999999999999999  7899999999998764310    000001123344443222


Q ss_pred             cccc----------------------cchHHHHHHHHcCC-CCccCCCCCC-CChhhhhe------ecCchhhc---ccc
Q 036195           82 CHEA----------------------LAFPCLERIYVHGC-PSLRKLPFSL-ESGKRNGV------LIGEEEWW---NQL  128 (183)
Q Consensus        82 ~~~~----------------------~~~~~l~vLe~l~L-~~L~~~~~~~-LSgGqk~~------i~~~~~w~---~~l  128 (183)
                      +...                      ......++++.+++ ..+.++++.+ |||||+|+      +..+|+.+   ||.
T Consensus        92 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPt  171 (250)
T 2d2e_A           92 VPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETD  171 (250)
T ss_dssp             CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGG
T ss_pred             ccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence            1110                      01234567888999 5888999999 99999983      37788887   999


Q ss_pred             cccCcccccccccceeecCcccccCCCCCCceeeeeecc-cceEEEEe
Q 036195          129 EWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRP-RYELICID  175 (183)
Q Consensus       129 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  175 (183)
                      ..-|+..+..+..++..+..+ ..+|+++|||++.+... ||++++++
T Consensus       172 s~LD~~~~~~l~~~l~~l~~~-g~tvi~vtHd~~~~~~~~~d~v~~l~  218 (250)
T 2d2e_A          172 SGLDIDALKVVARGVNAMRGP-NFGALVITHYQRILNYIQPDKVHVMM  218 (250)
T ss_dssp             GTTCHHHHHHHHHHHHHHCST-TCEEEEECSSSGGGGTSCCSEEEEEE
T ss_pred             cCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhcCCEEEEEE
Confidence            999999999999999887654 78999999999999888 69999986

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=99.96  E-value=2.2e-30  Score=206.22  Aligned_cols=164  Identities=13%  Similarity=0.029  Sum_probs=123.8

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|++  |+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++....    ... ....+++++|...++.
T Consensus        32 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~----~~~-~~~~i~~v~Q~~~l~~  106 (271)
T 2ixe_A           32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYD----HHY-LHTQVAAVGQEPLLFG  106 (271)
T ss_dssp             SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBC----HHH-HHHHEEEECSSCCCCS
T ss_pred             ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCC----HHH-HhccEEEEecCCcccc
Confidence            468875  568999999999999999999999999999999999999998764310    000 0122444444332221


Q ss_pred             c------------ccc-h---------HHHHHHHHc--CCCCccCCCCCCCChhhhhe------ecCchhhc---ccccc
Q 036195           84 E------------ALA-F---------PCLERIYVH--GCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEW  130 (183)
Q Consensus        84 ~------------~~~-~---------~~l~vLe~l--~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~  130 (183)
                      .            ... .         ...+.++.+  ++....++++.+|||||+|+      ++.+|+.+   ||+..
T Consensus       107 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~  186 (271)
T 2ixe_A          107 RSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSA  186 (271)
T ss_dssp             SBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred             ccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccC
Confidence            0            000 1         112345555  67777888999999999983      47888887   89999


Q ss_pred             cCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          131 DDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       131 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      .|+..+..+..++..+..+...+++++|||++.+.. ||++++++
T Consensus       187 LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~-~d~v~~l~  230 (271)
T 2ixe_A          187 LDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER-AHHILFLK  230 (271)
T ss_dssp             CCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT-CSEEEEEE
T ss_pred             CCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh-CCEEEEEE
Confidence            999999999999988866558899999999998765 99999986

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=99.96  E-value=2e-30  Score=204.65  Aligned_cols=170  Identities=14%  Similarity=0.125  Sum_probs=125.8

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEec---CccccccccchheeehhhhccCCCCcc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAV---SLQKKISVCSFILIRRAYFFKLPNLKS   80 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~---~~~~~~~~~~~~~l~~~~lg~lp~l~~   80 (183)
                      +++|++  |++++||+++|+||||||||||+|+|+|+++|++|+|.+...   -.+....+...+..+.+.++..+....
T Consensus        18 ~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~   97 (253)
T 2nq2_C           18 NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINT   97 (253)
T ss_dssp             TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCT
T ss_pred             CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhccc
Confidence            357874  568999999999999999999999999999999999974210   011111111122233332221111000


Q ss_pred             --ccccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCcc
Q 036195           81 --ICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQ  149 (183)
Q Consensus        81 --l~~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~  149 (183)
                        ...........++++.+++.++.++++.+|||||+|+      ++.+|+.+   ||+...|+..+..+..++..+..+
T Consensus        98 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~  177 (253)
T 2nq2_C           98 FAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQS  177 (253)
T ss_dssp             TCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHT
T ss_pred             ccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence              0011112346788999999999999999999999983      47888887   999999999999999999887666


Q ss_pred             cccCCCCCCceeeeeecccceEEEEe
Q 036195          150 TVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ...+|+++|||++.+.+.||++++++
T Consensus       178 ~g~tvi~vtHd~~~~~~~~d~v~~l~  203 (253)
T 2nq2_C          178 QNMTVVFTTHQPNQVVAIANKTLLLN  203 (253)
T ss_dssp             SCCEEEEEESCHHHHHHHCSEEEEEE
T ss_pred             cCCEEEEEecCHHHHHHhCCEEEEEe
Confidence            57899999999999999999999986

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=99.95  E-value=5.2e-30  Score=203.72  Aligned_cols=165  Identities=14%  Similarity=-0.042  Sum_probs=124.4

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcC--CCCCCcEEEEEecCccccccccchheeehhhhccCCCCccc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDM--FSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSI   81 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl--~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l   81 (183)
                      +++|++  |++++||+++|+||||||||||+|+|+|+  ++|++|+|.++|.++....    ........++++++...+
T Consensus        33 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~----~~~~~~~~i~~v~Q~~~l  108 (267)
T 2zu0_C           33 KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALS----PEDRAGEGIFMAFQYPVE  108 (267)
T ss_dssp             EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSC----HHHHHHHTEEEECSSCCC
T ss_pred             EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCC----HHHHhhCCEEEEccCccc
Confidence            467874  56899999999999999999999999999  4789999999998764310    000001123333332211


Q ss_pred             ccc--------------------------ccchHHHHHHHHcCCC-CccCCCCC-CCChhhhhe------ecCchhhc--
Q 036195           82 CHE--------------------------ALAFPCLERIYVHGCP-SLRKLPFS-LESGKRNGV------LIGEEEWW--  125 (183)
Q Consensus        82 ~~~--------------------------~~~~~~l~vLe~l~L~-~L~~~~~~-~LSgGqk~~------i~~~~~w~--  125 (183)
                      +..                          .....+.++++.+++. .+.++++. +|||||+|+      ++.+|+.+  
T Consensus       109 ~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlL  188 (267)
T 2zu0_C          109 IPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCIL  188 (267)
T ss_dssp             CTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEE
T ss_pred             cccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEE
Confidence            110                          0012356788999996 57888887 599999983      37788887  


Q ss_pred             -ccccccCcccccccccceeecCcccccCCCCCCceeeeeecc-cceEEEEe
Q 036195          126 -NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRP-RYELICID  175 (183)
Q Consensus       126 -~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  175 (183)
                       ||+...|+..+..+..++..+..+ ..+|+++|||++++... ||++++++
T Consensus       189 DEPts~LD~~~~~~l~~~l~~l~~~-g~tviivtHd~~~~~~~~~d~v~~l~  239 (267)
T 2zu0_C          189 DESDSGLDIDALKVVADGVNSLRDG-KRSFIIVTHYQRILDYIKPDYVHVLY  239 (267)
T ss_dssp             ESTTTTCCHHHHHHHHHHHHTTCCS-SCEEEEECSSGGGGGTSCCSEEEEEE
T ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEeeCHHHHHhhcCCEEEEEE
Confidence             999999999999999999888655 78999999999999886 99999986

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=99.95  E-value=1.1e-29  Score=199.28  Aligned_cols=162  Identities=13%  Similarity=0.048  Sum_probs=121.6

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|++  |++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....    .. ....++++++...++.
T Consensus        15 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~----~~-~~~~i~~v~q~~~l~~   89 (243)
T 1mv5_A           15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISL----EN-WRSQIGFVSQDSAIMA   89 (243)
T ss_dssp             SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSC----SC-CTTTCCEECCSSCCCC
T ss_pred             CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCH----HH-HHhhEEEEcCCCcccc
Confidence            457874  5689999999999999999999999999999999999999987643110    00 0122444444322221


Q ss_pred             -------------cccchHHHHHHHHcCCCCccC-----------CCCCCCChhhhhe------ecCchhhc---ccccc
Q 036195           84 -------------EALAFPCLERIYVHGCPSLRK-----------LPFSLESGKRNGV------LIGEEEWW---NQLEW  130 (183)
Q Consensus        84 -------------~~~~~~~l~vLe~l~L~~L~~-----------~~~~~LSgGqk~~------i~~~~~w~---~~l~~  130 (183)
                                   ........++++.+++.++.+           .++.+|||||+|+      ++.+|+.+   ||+..
T Consensus        90 ~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~  169 (243)
T 1mv5_A           90 GTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATAS  169 (243)
T ss_dssp             EEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCS
T ss_pred             ccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCccc
Confidence                         111223567778888766554           3467999999983      37788886   89999


Q ss_pred             cCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          131 DDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       131 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      .|+..+..+..++..+. + ..+++++|||++.+. .||++++++
T Consensus       170 LD~~~~~~i~~~l~~~~-~-~~tvi~vtH~~~~~~-~~d~v~~l~  211 (243)
T 1mv5_A          170 LDSESESMVQKALDSLM-K-GRTTLVIAHRLSTIV-DADKIYFIE  211 (243)
T ss_dssp             SCSSSCCHHHHHHHHHH-T-TSEEEEECCSHHHHH-HCSEEEEEE
T ss_pred             CCHHHHHHHHHHHHHhc-C-CCEEEEEeCChHHHH-hCCEEEEEE
Confidence            99999999999988775 4 789999999999775 599999997

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=99.95  E-value=6.1e-30  Score=201.20  Aligned_cols=162  Identities=14%  Similarity=0.062  Sum_probs=120.5

Q ss_pred             ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|+  ||++++||++||+||||||||||+|+|+|+++|++|+|.++|.++....    ...+ ...++++++...++.
T Consensus        22 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~----~~~~-~~~i~~v~Q~~~l~~   96 (247)
T 2ff7_A           22 PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALAD----PNWL-RRQVGVVLQDNVLLN   96 (247)
T ss_dssp             CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSC----HHHH-HHHEEEECSSCCCTT
T ss_pred             cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCC----HHHH-HhcEEEEeCCCcccc
Confidence            45787  4568999999999999999999999999999999999999998764310    0000 123445444332221


Q ss_pred             c------------ccchHHHHHHHHcCCCCc-----------cCCCCCCCChhhhhe------ecCchhhc---cccccc
Q 036195           84 E------------ALAFPCLERIYVHGCPSL-----------RKLPFSLESGKRNGV------LIGEEEWW---NQLEWD  131 (183)
Q Consensus        84 ~------------~~~~~~l~vLe~l~L~~L-----------~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~  131 (183)
                      .            .......++++.+++..+           .+.++.+|||||+|+      ++.+|+.+   ||....
T Consensus        97 ~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~L  176 (247)
T 2ff7_A           97 RSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSAL  176 (247)
T ss_dssp             SBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCC
T ss_pred             ccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence            0            111234556666666543           344568999999983      47888887   899999


Q ss_pred             CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      |+..+..+..++..+. + ..+++++|||++.+. .||++++++
T Consensus       177 D~~~~~~i~~~l~~~~-~-g~tviivtH~~~~~~-~~d~v~~l~  217 (247)
T 2ff7_A          177 DYESEHVIMRNMHKIC-K-GRTVIIIAHRLSTVK-NADRIIVME  217 (247)
T ss_dssp             CHHHHHHHHHHHHHHH-T-TSEEEEECSSGGGGT-TSSEEEEEE
T ss_pred             CHHHHHHHHHHHHHHc-C-CCEEEEEeCCHHHHH-hCCEEEEEE
Confidence            9999999999998773 4 789999999999875 499999986

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=99.95  E-value=2.6e-29  Score=199.23  Aligned_cols=156  Identities=17%  Similarity=0.100  Sum_probs=124.2

Q ss_pred             ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhc-cCCCCccc-
Q 036195            6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFF-KLPNLKSI-   81 (183)
Q Consensus         6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg-~lp~l~~l-   81 (183)
                      +++|+  ||+++ ||+++|+||||||||||+|+|+|++ |++|+|.++|.++...      ..  ...++ ++++...+ 
T Consensus        18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~------~~--~~~i~~~v~Q~~~l~   87 (263)
T 2pjz_A           18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI------RN--YIRYSTNLPEAYEIG   87 (263)
T ss_dssp             EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC------SC--CTTEEECCGGGSCTT
T ss_pred             ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch------HH--hhheEEEeCCCCccC
Confidence            46787  45699 9999999999999999999999999 9999999999776421      00  12344 44443222 


Q ss_pred             ---cc---------cccchHHHHHHHHcCCC-CccCCCCCCCChhhhhe------ecCchhhc---ccccccCccccccc
Q 036195           82 ---CH---------EALAFPCLERIYVHGCP-SLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVF  139 (183)
Q Consensus        82 ---~~---------~~~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~  139 (183)
                         ..         ........++++.+++. .+.++++.+|||||+|+      ++.+|+.+   ||+...|+..+..+
T Consensus        88 ~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l  167 (263)
T 2pjz_A           88 VTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVI  167 (263)
T ss_dssp             SBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHH
T ss_pred             CcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHH
Confidence               00         11122456789999998 99999999999999983      47888887   99999999999999


Q ss_pred             ccceeecCcccccCCCCCCceeeeeecccc-eEEEEe
Q 036195          140 SSKLIITTPQTVISIPQPSYTYEATIRPRY-ELICID  175 (183)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  175 (183)
                      ..++..+..    +++++|||++.+.+.|| ++++++
T Consensus       168 ~~~L~~~~~----tviivtHd~~~~~~~~d~~i~~l~  200 (263)
T 2pjz_A          168 SRYIKEYGK----EGILVTHELDMLNLYKEYKAYFLV  200 (263)
T ss_dssp             HHHHHHSCS----EEEEEESCGGGGGGCTTSEEEEEE
T ss_pred             HHHHHHhcC----cEEEEEcCHHHHHHhcCceEEEEE
Confidence            998887654    89999999999999999 999986

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=99.94  E-value=2.1e-28  Score=193.81  Aligned_cols=160  Identities=14%  Similarity=0.032  Sum_probs=117.6

Q ss_pred             cccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195            7 PHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE   84 (183)
Q Consensus         7 ~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~   84 (183)
                      ++|+  ||++++||+++|+||||||||||+|+|+|+++| +|+|.++|.++....    ... ....+++++|...++..
T Consensus        34 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~----~~~-~~~~i~~v~Q~~~l~~~  107 (260)
T 2ghi_A           34 RTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYN----RNS-IRSIIGIVPQDTILFNE  107 (260)
T ss_dssp             CSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBC----HHH-HHTTEEEECSSCCCCSE
T ss_pred             ceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcC----HHH-HhccEEEEcCCCccccc
Confidence            5887  456999999999999999999999999999987 899999998764310    000 01234455544332210


Q ss_pred             ------------ccchHHHHHHHHcCCCCc-----------cCCCCCCCChhhhhe------ecCchhhc---ccccccC
Q 036195           85 ------------ALAFPCLERIYVHGCPSL-----------RKLPFSLESGKRNGV------LIGEEEWW---NQLEWDD  132 (183)
Q Consensus        85 ------------~~~~~~l~vLe~l~L~~L-----------~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d  132 (183)
                                  .......++++.+++..+           .+.++.+|||||+|+      ++.+|+.+   ||+...|
T Consensus       108 tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD  187 (260)
T 2ghi_A          108 TIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLD  187 (260)
T ss_dssp             EHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTC
T ss_pred             CHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCC
Confidence                        011234455666665332           245678999999983      37788886   8999999


Q ss_pred             cccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          133 EATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+..+..++..+..  ..+++++|||++.+. .||++++++
T Consensus       188 ~~~~~~i~~~l~~l~~--~~tviivtH~~~~~~-~~d~i~~l~  227 (260)
T 2ghi_A          188 SKTEYLFQKAVEDLRK--NRTLIIIAHRLSTIS-SAESIILLN  227 (260)
T ss_dssp             HHHHHHHHHHHHHHTT--TSEEEEECSSGGGST-TCSEEEEEE
T ss_pred             HHHHHHHHHHHHHhcC--CCEEEEEcCCHHHHH-hCCEEEEEE
Confidence            9999999999887753  578999999999875 599999986

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.94  E-value=4.7e-29  Score=201.51  Aligned_cols=162  Identities=13%  Similarity=0.061  Sum_probs=120.8

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|++  |+|++||++||+||||||||||+++|+|+++|++|+|.++|.++....    ...+ ...+++++|...++.
T Consensus        67 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~----~~~~-r~~i~~v~Q~~~lf~  141 (306)
T 3nh6_A           67 RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVT----QASL-RSHIGVVPQDTVLFN  141 (306)
T ss_dssp             CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBC----HHHH-HHTEEEECSSCCCCS
T ss_pred             CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCC----HHHH-hcceEEEecCCccCc
Confidence            467875  468999999999999999999999999999999999999999876421    1111 134566666554442


Q ss_pred             c------------ccchHHHHHHHHcCC-----------CCccCCCCCCCChhhhhe------ecCchhhc---cccccc
Q 036195           84 E------------ALAFPCLERIYVHGC-----------PSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWD  131 (183)
Q Consensus        84 ~------------~~~~~~l~vLe~l~L-----------~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~  131 (183)
                      .            .......++++.+++           ......+...|||||+|+      +..+|+.+   ||....
T Consensus       142 ~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~L  221 (306)
T 3nh6_A          142 DTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSAL  221 (306)
T ss_dssp             EEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCC
T ss_pred             ccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccC
Confidence            1            111233445555444           334456678999999984      36677776   899999


Q ss_pred             CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      |+.++..+...+..+..  .+++++++|++..+.. ||+|+++|
T Consensus       222 D~~~~~~i~~~l~~l~~--~~Tvi~itH~l~~~~~-aD~i~vl~  262 (306)
T 3nh6_A          222 DTSNERAIQASLAKVCA--NRTTIVVAHRLSTVVN-ADQILVIK  262 (306)
T ss_dssp             CHHHHHHHHHHHHHHHT--TSEEEEECCSHHHHHT-CSEEEEEE
T ss_pred             CHHHHHHHHHHHHHHcC--CCEEEEEEcChHHHHc-CCEEEEEE
Confidence            99999999888876643  4789999999999876 99999997

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=99.94  E-value=8.1e-28  Score=187.09  Aligned_cols=157  Identities=10%  Similarity=0.030  Sum_probs=107.9

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecC---ccccccccchheeehhhhccCCCCcc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVS---LQKKISVCSFILIRRAYFFKLPNLKS   80 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~---~~~~~~~~~~~~l~~~~lg~lp~l~~   80 (183)
                      +++|++  |++++||+++|+||||||||||+|+|+|+++|++|+|.++|.-   .+.. ..+..+..+.+.++.  .   
T Consensus        21 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~-~~~~~tv~enl~~~~--~---   94 (229)
T 2pze_A           21 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFS-WIMPGTIKENIIFGV--S---   94 (229)
T ss_dssp             CCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSC-CCCSBCHHHHHHTTS--C---
T ss_pred             ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCC-cccCCCHHHHhhccC--C---
Confidence            468874  5689999999999999999999999999999999999998731   0110 001112222221110  0   


Q ss_pred             ccccccchHHHHHHHHcCCCC-----------ccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccc
Q 036195           81 ICHEALAFPCLERIYVHGCPS-----------LRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFS  140 (183)
Q Consensus        81 l~~~~~~~~~l~vLe~l~L~~-----------L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~  140 (183)
                          .......++++.+++..           ..+.++.+|||||+|+      +..+|+.+   ||+...|+..+..+.
T Consensus        95 ----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~  170 (229)
T 2pze_A           95 ----YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIF  170 (229)
T ss_dssp             ----CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHH
T ss_pred             ----cChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHH
Confidence                00111223344444322           2234568999999983      47788887   899999999999988


Q ss_pred             cc-eeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          141 SK-LIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       141 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      .. +.... + ..+++++|||++.+. .||++++++
T Consensus       171 ~~l~~~~~-~-~~tvi~vtH~~~~~~-~~d~v~~l~  203 (229)
T 2pze_A          171 ESCVCKLM-A-NKTRILVTSKMEHLK-KADKILILH  203 (229)
T ss_dssp             HHCCCCCT-T-TSEEEEECCCHHHHH-HCSEEEEEE
T ss_pred             HHHHHHhh-C-CCEEEEEcCChHHHH-hCCEEEEEE
Confidence            75 44443 3 578999999999865 599999986

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=99.94  E-value=4.3e-28  Score=201.57  Aligned_cols=161  Identities=16%  Similarity=0.089  Sum_probs=125.4

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|++  |+|++||+++|+||||||||||||+|+|+++ ++|+|.++|+++....    ... ....+++++|...++.
T Consensus        34 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~----~~~-~rr~ig~v~Q~~~lf~  107 (390)
T 3gd7_A           34 NAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSIT----LEQ-WRKAFGVIPQKVFIFS  107 (390)
T ss_dssp             CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSC----HHH-HHHTEEEESCCCCCCS
T ss_pred             eEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCC----hHH-HhCCEEEEcCCcccCc
Confidence            467875  5699999999999999999999999999998 9999999999875421    111 1123555555443332


Q ss_pred             c-----------ccchHHHHHHHHcCCCCccCCCCCC-----------CChhhhhe------ecCchhhc---ccccccC
Q 036195           84 E-----------ALAFPCLERIYVHGCPSLRKLPFSL-----------ESGKRNGV------LIGEEEWW---NQLEWDD  132 (183)
Q Consensus        84 ~-----------~~~~~~l~vLe~l~L~~L~~~~~~~-----------LSgGqk~~------i~~~~~w~---~~l~~~d  132 (183)
                      .           .....+.++++.+++..+.++++.+           |||||+|+      +..+|+++   ||+...|
T Consensus       108 ~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD  187 (390)
T 3gd7_A          108 GTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLD  187 (390)
T ss_dssp             EEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSC
T ss_pred             cCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCC
Confidence            1           1123467889999999999998888           99999983      47788887   8999999


Q ss_pred             cccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          133 EATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+..+...+..+.  ...++++++||++ .+..|||+++++
T Consensus       188 ~~~~~~l~~~l~~~~--~~~tvi~vtHd~e-~~~~aDri~vl~  227 (390)
T 3gd7_A          188 PVTYQIIRRTLKQAF--ADCTVILCEARIE-AMLECDQFLVIE  227 (390)
T ss_dssp             HHHHHHHHHHHHTTT--TTSCEEEECSSSG-GGTTCSEEEEEE
T ss_pred             HHHHHHHHHHHHHHh--CCCEEEEEEcCHH-HHHhCCEEEEEE
Confidence            999999998887653  3588999999986 556699999986

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=99.93  E-value=1.6e-27  Score=186.41  Aligned_cols=159  Identities=13%  Similarity=0.009  Sum_probs=108.8

Q ss_pred             ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecC---ccccccccchheeehhhhccCCCCcc
Q 036195            6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVS---LQKKISVCSFILIRRAYFFKLPNLKS   80 (183)
Q Consensus         6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~---~~~~~~~~~~~~l~~~~lg~lp~l~~   80 (183)
                      +++|+  ||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.-   .+.. .....+..+.+.++.  .   
T Consensus        18 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~-~~~~~tv~enl~~~~--~---   91 (237)
T 2cbz_A           18 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQA-WIQNDSLRENILFGC--Q---   91 (237)
T ss_dssp             CCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSC-CCCSEEHHHHHHTTS--C---
T ss_pred             CceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCC-cCCCcCHHHHhhCcc--c---
Confidence            46787  45699999999999999999999999999999999999998731   1110 011111222221111  0   


Q ss_pred             ccccccchHHHHHHHHcCC------C-----CccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccc
Q 036195           81 ICHEALAFPCLERIYVHGC------P-----SLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFS  140 (183)
Q Consensus        81 l~~~~~~~~~l~vLe~l~L------~-----~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~  140 (183)
                      ..    .....++++.+++      .     ...+.++.+|||||+|+      +..+|+.+   ||+...|+..+..+.
T Consensus        92 ~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~  167 (237)
T 2cbz_A           92 LE----EPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIF  167 (237)
T ss_dssp             CC----TTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHH
T ss_pred             cC----HHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHH
Confidence            00    1112233333322      1     13467889999999983      37788886   899999999998888


Q ss_pred             cceeec-CcccccCCCCCCceeeeeecccceEEEEe
Q 036195          141 SKLIIT-TPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       141 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ..+... ......+++++|||++.+ +.||++++++
T Consensus       168 ~~l~~~~~~~~~~tviivtH~~~~~-~~~d~v~~l~  202 (237)
T 2cbz_A          168 ENVIGPKGMLKNKTRILVTHSMSYL-PQVDVIIVMS  202 (237)
T ss_dssp             HHTTSTTSTTTTSEEEEECSCSTTG-GGSSEEEEEE
T ss_pred             HHHHHHHhhcCCCEEEEEecChHHH-HhCCEEEEEe
Confidence            877421 112267899999999986 5799999986

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.93  E-value=7.8e-28  Score=207.55  Aligned_cols=160  Identities=13%  Similarity=-0.000  Sum_probs=123.8

Q ss_pred             cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcccccc----ccchheeehhhhccCCCCcccccccc
Q 036195           11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKIS----VCSFILIRRAYFFKLPNLKSICHEAL   86 (183)
Q Consensus        11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~----~~~~~~l~~~~lg~lp~l~~l~~~~~   86 (183)
                      ++++++||++||+||||||||||+|+|+|+++|++|+|.+.+..+.-...    ....+..+.+.... .    ......
T Consensus       288 ~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~-~----~~~~~~  362 (538)
T 3ozx_A          288 NGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENAS-K----DALSTS  362 (538)
T ss_dssp             CEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHC-S----STTCTT
T ss_pred             cceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhh-h----hccchh
Confidence            66789999999999999999999999999999999999987654431100    00011111111110 0    000112


Q ss_pred             chHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCcccccCCCCC
Q 036195           87 AFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQP  157 (183)
Q Consensus        87 ~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  157 (183)
                      .....++++.+++..+.++++.+|||||+|+      ++.+|+.+   ||....|+.++..+..++..+..+...+|+++
T Consensus       363 ~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~v  442 (538)
T 3ozx_A          363 SWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFII  442 (538)
T ss_dssp             SHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence            2345778889999999999999999999983      37788886   99999999999999999998877778899999


Q ss_pred             CceeeeeecccceEEEEe
Q 036195          158 SYTYEATIRPRYELICID  175 (183)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~  175 (183)
                      |||++++.+.||||++++
T Consensus       443 sHdl~~~~~~aDri~vl~  460 (538)
T 3ozx_A          443 DHDLSIHDYIADRIIVFK  460 (538)
T ss_dssp             CSCHHHHHHHCSEEEEEE
T ss_pred             eCCHHHHHHhCCEEEEEe
Confidence            999999999999999997

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=99.92  E-value=1e-26  Score=202.52  Aligned_cols=162  Identities=13%  Similarity=0.079  Sum_probs=121.1

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|+++  ++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+..    ...+ ...+++++|...++.
T Consensus       356 ~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~----~~~~-~~~i~~v~Q~~~l~~  430 (582)
T 3b5x_A          356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYK----LTNL-RRHFALVSQNVHLFN  430 (582)
T ss_pred             ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCC----HHHH-hcCeEEEcCCCcccc
Confidence            4688855  58999999999999999999999999999999999999998775321    0000 123444454332221


Q ss_pred             -------------cccchHHHHHHHHcCCCCccC-----------CCCCCCChhhhhe------ecCchhhc---ccccc
Q 036195           84 -------------EALAFPCLERIYVHGCPSLRK-----------LPFSLESGKRNGV------LIGEEEWW---NQLEW  130 (183)
Q Consensus        84 -------------~~~~~~~l~vLe~l~L~~L~~-----------~~~~~LSgGqk~~------i~~~~~w~---~~l~~  130 (183)
                                   .....+..++++.+++.++.+           .+..+|||||||+      +..+|+.+   ||...
T Consensus       431 ~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~  510 (582)
T 3b5x_A          431 DTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSA  510 (582)
T ss_pred             ccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccc
Confidence                         111234566777777654433           3457899999984      37788876   89999


Q ss_pred             cCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          131 DDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       131 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      -|+.++..+...+..+..  .++++++||+++.+. .||+++++|
T Consensus       511 LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~d~i~~l~  552 (582)
T 3b5x_A          511 LDTESERAIQAALDELQK--NKTVLVIAHRLSTIE-QADEILVVD  552 (582)
T ss_pred             CCHHHHHHHHHHHHHHcC--CCEEEEEecCHHHHH-hCCEEEEEE
Confidence            999999999998887643  788999999999765 799999997

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=99.92  E-value=7.3e-27  Score=187.52  Aligned_cols=157  Identities=10%  Similarity=0.016  Sum_probs=106.2

Q ss_pred             ccccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecC---ccccccccchheeehhhhccCCCCc
Q 036195            5 YRPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVS---LQKKISVCSFILIRRAYFFKLPNLK   79 (183)
Q Consensus         5 ~~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~---~~~~~~~~~~~~l~~~~lg~lp~l~   79 (183)
                      ++++|++  |++++||+++|+||||||||||+|+|+|+++|++|+|.++|.-   .+.. ..+..+..+.+. +. .   
T Consensus        50 ~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~-~l~~~tv~enl~-~~-~---  123 (290)
T 2bbs_A           50 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNS-WIMPGTIKENII-GV-S---  123 (290)
T ss_dssp             CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSC-CCCSSBHHHHHH-TT-C---
T ss_pred             CceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCC-ccCcccHHHHhh-Cc-c---
Confidence            3567874  5689999999999999999999999999999999999998731   0110 001111122111 10 0   


Q ss_pred             cccccccchHHHHHHHHcCCCCc-----------cCCCCCCCChhhhhe------ecCchhhc---ccccccCccccccc
Q 036195           80 SICHEALAFPCLERIYVHGCPSL-----------RKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVF  139 (183)
Q Consensus        80 ~l~~~~~~~~~l~vLe~l~L~~L-----------~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~  139 (183)
                        .   ......++++.+++...           .+.++.+|||||+|+      ++.+|+.+   ||+...|+..+..+
T Consensus       124 --~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i  198 (290)
T 2bbs_A          124 --Y---DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEI  198 (290)
T ss_dssp             --C---CHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHH
T ss_pred             --c---chHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHH
Confidence              0   01112334444444321           233468999999983      47888887   89999999999999


Q ss_pred             ccc-eeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          140 SSK-LIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       140 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ..+ +..+. + ..+|+++|||++.+ ..||++++++
T Consensus       199 ~~~ll~~~~-~-~~tviivtHd~~~~-~~~d~i~~l~  232 (290)
T 2bbs_A          199 FESCVCKLM-A-NKTRILVTSKMEHL-KKADKILILH  232 (290)
T ss_dssp             HHHCCCCCT-T-TSEEEEECCCHHHH-HHSSEEEEEE
T ss_pred             HHHHHHHhh-C-CCEEEEEecCHHHH-HcCCEEEEEE
Confidence            875 44443 3 67899999999887 4699999986

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=99.92  E-value=1.3e-26  Score=201.89  Aligned_cols=162  Identities=14%  Similarity=0.077  Sum_probs=120.7

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|++  |++++||++||+||||||||||+++|+|+++|++|+|.++|.++.+..    ...+ ...+++++|...++.
T Consensus       356 ~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~----~~~~-~~~i~~v~Q~~~l~~  430 (582)
T 3b60_A          356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYT----LASL-RNQVALVSQNVHLFN  430 (582)
T ss_dssp             CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBC----HHHH-HHTEEEECSSCCCCS
T ss_pred             CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccC----HHHH-HhhCeEEccCCcCCC
Confidence            468885  458999999999999999999999999999999999999998775321    0011 123455555433322


Q ss_pred             -------------cccchHHHHHHHHcCCCC-----------ccCCCCCCCChhhhhe------ecCchhhc---ccccc
Q 036195           84 -------------EALAFPCLERIYVHGCPS-----------LRKLPFSLESGKRNGV------LIGEEEWW---NQLEW  130 (183)
Q Consensus        84 -------------~~~~~~~l~vLe~l~L~~-----------L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~  130 (183)
                                   .....+..++++.+++.+           ....+..+|||||||+      +..+|+.+   ||...
T Consensus       431 ~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~  510 (582)
T 3b60_A          431 DTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSA  510 (582)
T ss_dssp             SBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSS
T ss_pred             CCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECcccc
Confidence                         111234556666666643           3344668999999984      36778776   89999


Q ss_pred             cCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          131 DDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       131 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      -|+.++..+...+..+..  .++++++||+++.+ +.||+++++|
T Consensus       511 LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~-~~~d~i~~l~  552 (582)
T 3b60_A          511 LDTESERAIQAALDELQK--NRTSLVIAHRLSTI-EQADEIVVVE  552 (582)
T ss_dssp             CCHHHHHHHHHHHHHHHT--TSEEEEECSCGGGT-TTCSEEEEEE
T ss_pred             CCHHHHHHHHHHHHHHhC--CCEEEEEeccHHHH-HhCCEEEEEE
Confidence            999999999988877643  68899999999876 5799999997

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.92  E-value=1.4e-26  Score=202.18  Aligned_cols=158  Identities=15%  Similarity=0.045  Sum_probs=118.3

Q ss_pred             cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCc----cccccccchheeehhhhccCCCCcccccccc
Q 036195           11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSL----QKKISVCSFILIRRAYFFKLPNLKSICHEAL   86 (183)
Q Consensus        11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----~~~~~~~~~~~l~~~~lg~lp~l~~l~~~~~   86 (183)
                      +|++.+||++||+||||||||||+|+|+|+++|++|+|.+. ..+    +........++.+.+....    .  .....
T Consensus       376 ~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~-~~i~~v~Q~~~~~~~~tv~e~~~~~~----~--~~~~~  448 (607)
T 3bk7_A          376 PGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-LTVAYKPQYIKAEYEGTVYELLSKID----S--SKLNS  448 (607)
T ss_dssp             CEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC-CCEEEECSSCCCCCSSBHHHHHHHHH----H--HHHHC
T ss_pred             ccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe-eEEEEEecCccCCCCCcHHHHHHhhh----c--cCCCH
Confidence            45679999999999999999999999999999999999762 111    0000000011111000000    0  00001


Q ss_pred             chHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCcccccCCCCC
Q 036195           87 AFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQP  157 (183)
Q Consensus        87 ~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  157 (183)
                      ...+.++++.+++..+.++++.+|||||+|+      ++.+|+.+   ||....|+..+..+..++..+..+...+++++
T Consensus       449 ~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~v  528 (607)
T 3bk7_A          449 NFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVV  528 (607)
T ss_dssp             HHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence            1235678899999999999999999999983      47788887   99999999999999999988766668899999


Q ss_pred             CceeeeeecccceEEEEe
Q 036195          158 SYTYEATIRPRYELICID  175 (183)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~  175 (183)
                      |||++++.+.|||+++++
T Consensus       529 sHd~~~~~~~adrv~vl~  546 (607)
T 3bk7_A          529 EHDVLMIDYVSDRLIVFE  546 (607)
T ss_dssp             CSCHHHHHHHCSEEEEEE
T ss_pred             eCCHHHHHHhCCEEEEEc
Confidence            999999999999999997

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.91  E-value=1e-26  Score=200.80  Aligned_cols=158  Identities=15%  Similarity=0.062  Sum_probs=117.4

Q ss_pred             cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCc----cccccccchheeehhhhccCCCCcccccccc
Q 036195           11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSL----QKKISVCSFILIRRAYFFKLPNLKSICHEAL   86 (183)
Q Consensus        11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----~~~~~~~~~~~l~~~~lg~lp~l~~l~~~~~   86 (183)
                      +|++.+||++||+||||||||||+|+|+|+++|++|+|.+. ..+    +........++.+.+.  ...  .  .....
T Consensus       306 ~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~-~~i~~v~Q~~~~~~~~tv~~~~~--~~~--~--~~~~~  378 (538)
T 1yqt_A          306 PGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD-LTVAYKPQYIKADYEGTVYELLS--KID--A--SKLNS  378 (538)
T ss_dssp             CEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCC-CCEEEECSSCCCCCSSBHHHHHH--HHH--H--HHHTC
T ss_pred             ccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC-ceEEEEecCCcCCCCCcHHHHHH--hhh--c--cCCCH
Confidence            45578999999999999999999999999999999999762 111    0000000001100000  000  0  00001


Q ss_pred             chHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCcccccCCCCC
Q 036195           87 AFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQP  157 (183)
Q Consensus        87 ~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  157 (183)
                      ...+.++++.+++..+.++++.+|||||+|+      ++.+|+.+   ||....|+.++..+..++..+..+...+++++
T Consensus       379 ~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~v  458 (538)
T 1yqt_A          379 NFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVV  458 (538)
T ss_dssp             HHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred             HHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence            1235667888899889999999999999983      47788886   99999999999999999988765668899999


Q ss_pred             CceeeeeecccceEEEEe
Q 036195          158 SYTYEATIRPRYELICID  175 (183)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~  175 (183)
                      |||++++.+.|||+++++
T Consensus       459 sHd~~~~~~~~drv~vl~  476 (538)
T 1yqt_A          459 EHDVLMIDYVSDRLMVFE  476 (538)
T ss_dssp             CSCHHHHHHHCSEEEEEE
T ss_pred             eCCHHHHHHhCCEEEEEe
Confidence            999999999999999997

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=99.91  E-value=2.1e-26  Score=200.37  Aligned_cols=162  Identities=12%  Similarity=0.079  Sum_probs=120.3

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|++  |++++||++||+||||||||||+++|+|+++|++|+|.++|.++....    ... ....+++++|...++.
T Consensus       354 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~----~~~-~r~~i~~v~Q~~~l~~  428 (578)
T 4a82_A          354 APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFL----TGS-LRNQIGLVQQDNILFS  428 (578)
T ss_dssp             CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSC----HHH-HHHTEEEECSSCCCCS
T ss_pred             CcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCC----HHH-HhhheEEEeCCCccCc
Confidence            468885  469999999999999999999999999999999999999998876421    011 1124566666544432


Q ss_pred             c------------ccchHHHHHHHHcCCCCc-----------cCCCCCCCChhhhhe------ecCchhhc---cccccc
Q 036195           84 E------------ALAFPCLERIYVHGCPSL-----------RKLPFSLESGKRNGV------LIGEEEWW---NQLEWD  131 (183)
Q Consensus        84 ~------------~~~~~~l~vLe~l~L~~L-----------~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~  131 (183)
                      .            ....+..++++..++.+.           ...+..+|||||||+      +..+|+.+   ||....
T Consensus       429 ~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~L  508 (578)
T 4a82_A          429 DTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSAL  508 (578)
T ss_dssp             SBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTC
T ss_pred             ccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccC
Confidence            1            112234556666655332           233446899999984      36677776   899999


Q ss_pred             CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      |+.++..+...+..+..  .+++++++|+++.+. .||+++++|
T Consensus       509 D~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~-~~d~i~~l~  549 (578)
T 4a82_A          509 DLESESIIQEALDVLSK--DRTTLIVAHRLSTIT-HADKIVVIE  549 (578)
T ss_dssp             CHHHHHHHHHHHHHHTT--TSEEEEECSSGGGTT-TCSEEEEEE
T ss_pred             CHHHHHHHHHHHHHHcC--CCEEEEEecCHHHHH-cCCEEEEEE
Confidence            99999999888876644  478999999999874 599999997

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.91  E-value=3e-26  Score=200.07  Aligned_cols=162  Identities=12%  Similarity=0.038  Sum_probs=120.6

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|+++  ++++||++||+||||||||||+++|+|+++|++|+|.++|.++.+..    ...+ ...+++++|...++.
T Consensus       368 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~----~~~~-r~~i~~v~Q~~~lf~  442 (598)
T 3qf4_B          368 KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIK----RSSL-RSSIGIVLQDTILFS  442 (598)
T ss_dssp             SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSC----HHHH-HHHEEEECTTCCCCS
T ss_pred             CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCC----HHHH-HhceEEEeCCCcccc
Confidence            4688865  58999999999999999999999999999999999999998876421    0111 134566666544432


Q ss_pred             c------------ccchHHHHHHHHcCCCCccCCCC-----------CCCChhhhhe------ecCchhhc---cccccc
Q 036195           84 E------------ALAFPCLERIYVHGCPSLRKLPF-----------SLESGKRNGV------LIGEEEWW---NQLEWD  131 (183)
Q Consensus        84 ~------------~~~~~~l~vLe~l~L~~L~~~~~-----------~~LSgGqk~~------i~~~~~w~---~~l~~~  131 (183)
                      .            ....+..++++.+++.+..+..+           .+|||||||+      +..+|+.+   ||...-
T Consensus       443 ~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~L  522 (598)
T 3qf4_B          443 TTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNV  522 (598)
T ss_dssp             SBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTC
T ss_pred             ccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCC
Confidence            1            11223455555555544333322           6899999984      36777776   899999


Q ss_pred             CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      |+.++..+...+..+.  ..+++++++|+++.+. .||+++++|
T Consensus       523 D~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~-~~d~i~~l~  563 (598)
T 3qf4_B          523 DTKTEKSIQAAMWKLM--EGKTSIIIAHRLNTIK-NADLIIVLR  563 (598)
T ss_dssp             CHHHHHHHHHHHHHHH--TTSEEEEESCCTTHHH-HCSEEEEEC
T ss_pred             CHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHH-cCCEEEEEE
Confidence            9999999988887664  2689999999999865 499999997

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.91  E-value=8.3e-26  Score=196.95  Aligned_cols=162  Identities=13%  Similarity=0.062  Sum_probs=122.4

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|++  |++++||++||+||||||||||+++|+|+++|++|+|.++|.++....    ...+ ...++++||...++.
T Consensus       356 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~----~~~~-r~~i~~v~Q~~~lf~  430 (587)
T 3qf4_A          356 DPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVK----LKDL-RGHISAVPQETVLFS  430 (587)
T ss_dssp             CCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBC----HHHH-HHHEEEECSSCCCCS
T ss_pred             CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCC----HHHH-HhheEEECCCCcCcC
Confidence            468885  469999999999999999999999999999999999999999876421    1111 134666666554442


Q ss_pred             c------------ccchHHHHHHHHcCC-----------CCccCCCCCCCChhhhhe------ecCchhhc---cccccc
Q 036195           84 E------------ALAFPCLERIYVHGC-----------PSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWD  131 (183)
Q Consensus        84 ~------------~~~~~~l~vLe~l~L-----------~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~  131 (183)
                      .            ....+..++++..++           ....+.+..+|||||||+      +..+|+.+   ||....
T Consensus       431 ~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~L  510 (587)
T 3qf4_A          431 GTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSV  510 (587)
T ss_dssp             EEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTS
T ss_pred             ccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccC
Confidence            1            111233444444433           345567788999999984      36778876   899999


Q ss_pred             CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      |+.++..+...+..+.  ..+++++++|+++.+ +.|||++++|
T Consensus       511 D~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~-~~~d~i~vl~  551 (587)
T 3qf4_A          511 DPITEKRILDGLKRYT--KGCTTFIITQKIPTA-LLADKILVLH  551 (587)
T ss_dssp             CHHHHHHHHHHHHHHS--TTCEEEEEESCHHHH-TTSSEEEEEE
T ss_pred             CHHHHHHHHHHHHHhC--CCCEEEEEecChHHH-HhCCEEEEEE
Confidence            9999999998887664  268999999999986 5899999997

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.91  E-value=1.8e-26  Score=199.28  Aligned_cols=165  Identities=12%  Similarity=-0.009  Sum_probs=121.5

Q ss_pred             cccccce-ecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEE---------EEEecCccccccccchheeehhhhccCC
Q 036195            7 PHLRYIE-DDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKF---------AIYAVSLQKKISVCSFILIRRAYFFKLP   76 (183)
Q Consensus         7 ~~l~~l~-i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I---------~~~g~~~~~~~~~~~~~~l~~~~lg~lp   76 (183)
                      .++++++ |++||++||+||||||||||+|+|+|+++|++|++         .+.|.+++...   .........+++.+
T Consensus        36 ~~l~~vs~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~  112 (538)
T 1yqt_A           36 FVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYF---EKLKNGEIRPVVKP  112 (538)
T ss_dssp             CEEECCCCCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHH---HHHHTTSCCCEEEC
T ss_pred             ccccCcCcCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHH---HHHHHHhhhhhhhh
Confidence            3678774 89999999999999999999999999999999985         23343332100   00000001111112


Q ss_pred             CCccccc-------------cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcc
Q 036195           77 NLKSICH-------------EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEA  134 (183)
Q Consensus        77 ~l~~l~~-------------~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~  134 (183)
                      +......             ......+.++++.+++..+.++++.+|||||+|+      ++.+|+.+   ||...-|+.
T Consensus       113 q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~  192 (538)
T 1yqt_A          113 QYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIR  192 (538)
T ss_dssp             SCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHH
T ss_pred             hhhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHH
Confidence            1110000             0011246788999999999999999999999983      47888887   899999999


Q ss_pred             cccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          135 TKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      .+..+..++..+..+ ..+|+++|||++++.+.||++++++
T Consensus       193 ~~~~l~~~L~~l~~~-g~tvi~vsHd~~~~~~~~dri~vl~  232 (538)
T 1yqt_A          193 QRLNAARAIRRLSEE-GKSVLVVEHDLAVLDYLSDIIHVVY  232 (538)
T ss_dssp             HHHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred             HHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEc
Confidence            999999998887654 8899999999999999999999986

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.90  E-value=3e-26  Score=200.02  Aligned_cols=165  Identities=11%  Similarity=-0.003  Sum_probs=122.1

Q ss_pred             cccccce-ecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEE---------EEEecCccccccccchheeehhhhccCC
Q 036195            7 PHLRYIE-DDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKF---------AIYAVSLQKKISVCSFILIRRAYFFKLP   76 (183)
Q Consensus         7 ~~l~~l~-i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I---------~~~g~~~~~~~~~~~~~~l~~~~lg~lp   76 (183)
                      .+|++++ +++||++||+||||||||||+|+|+|+++|++|++         .+.|.+++....  ... .....+++.+
T Consensus       106 ~~l~~vs~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~--~~~-~~~~~i~~~~  182 (607)
T 3bk7_A          106 FVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFE--RLK-NGEIRPVVKP  182 (607)
T ss_dssp             CEEECCCCCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHH--HHH-HTSCCCEEEC
T ss_pred             eeeCCCCCCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhh--hhh-hhhcceEEee
Confidence            3678775 89999999999999999999999999999999995         233443321000  000 0001111111


Q ss_pred             CCcc---------ccc----cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcc
Q 036195           77 NLKS---------ICH----EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEA  134 (183)
Q Consensus        77 ~l~~---------l~~----~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~  134 (183)
                      +...         +..    ......+.++++.+++..+.++++.+|||||+|+      ++.+|+.+   ||....|+.
T Consensus       183 q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~  262 (607)
T 3bk7_A          183 QYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIR  262 (607)
T ss_dssp             SCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHH
T ss_pred             chhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHH
Confidence            1100         000    0111246788999999999999999999999983      47888887   899999999


Q ss_pred             cccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          135 TKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      .+..+..++..+..+ ..+|+++|||++++.+.||+|++++
T Consensus       263 ~~~~l~~~L~~l~~~-g~tvIivsHdl~~~~~~adri~vl~  302 (607)
T 3bk7_A          263 QRLKVARVIRRLANE-GKAVLVVEHDLAVLDYLSDVIHVVY  302 (607)
T ss_dssp             HHHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred             HHHHHHHHHHHHHhc-CCEEEEEecChHHHHhhCCEEEEEC
Confidence            999999999887654 8899999999999999999999997

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.90  E-value=6.5e-26  Score=195.59  Aligned_cols=160  Identities=11%  Similarity=-0.038  Sum_probs=116.4

Q ss_pred             ecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEE-----------EEEecCccccccccchheee-hhhhccCCCCccc
Q 036195           14 DDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKF-----------AIYAVSLQKKISVCSFILIR-RAYFFKLPNLKSI   81 (183)
Q Consensus        14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I-----------~~~g~~~~~~~~~~~~~~l~-~~~lg~lp~l~~l   81 (183)
                      +++||++||+||||||||||+|+|+|+++|++|+|           .+.|.++............. .....++.+....
T Consensus        22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (538)
T 3ozx_A           22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKF  101 (538)
T ss_dssp             CCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTT
T ss_pred             CCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhh
Confidence            57999999999999999999999999999999998           44554442110000000000 0001111111100


Q ss_pred             c---------ccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccce
Q 036195           82 C---------HEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKL  143 (183)
Q Consensus        82 ~---------~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~  143 (183)
                      +         .........++++.+++..+.++++.+|||||+|+      ++.+|+.+   ||...-|+..+..+..++
T Consensus       102 ~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l  181 (538)
T 3ozx_A          102 LKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAI  181 (538)
T ss_dssp             CCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHH
T ss_pred             ccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHH
Confidence            0         00111245788999999999999999999999983      47888886   899999999999999888


Q ss_pred             eecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          144 IITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ..+..  ..+|+++|||++++...||+|++++
T Consensus       182 ~~l~~--g~tii~vsHdl~~~~~~~d~i~vl~  211 (538)
T 3ozx_A          182 RELLK--NKYVIVVDHDLIVLDYLTDLIHIIY  211 (538)
T ss_dssp             HHHCT--TSEEEEECSCHHHHHHHCSEEEEEE
T ss_pred             HHHhC--CCEEEEEEeChHHHHhhCCEEEEec
Confidence            87753  6899999999999999999999986

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.90  E-value=1.7e-25  Score=195.17  Aligned_cols=162  Identities=14%  Similarity=0.021  Sum_probs=116.4

Q ss_pred             eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEE-----------EEecCccccccccchheeeh-hhhccCCCCc-
Q 036195           13 EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFA-----------IYAVSLQKKISVCSFILIRR-AYFFKLPNLK-   79 (183)
Q Consensus        13 ~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~-----------~~g~~~~~~~~~~~~~~l~~-~~lg~lp~l~-   79 (183)
                      .+++||++||+||||||||||+|+|+|+++|++|+|.           +.|.+++............. ....++.+.. 
T Consensus        99 ~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (608)
T 3j16_B           99 TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPR  178 (608)
T ss_dssp             CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHH
T ss_pred             CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhh
Confidence            4789999999999999999999999999999999982           22222211000000000000 0000000000 


Q ss_pred             -------cc------cccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccccc
Q 036195           80 -------SI------CHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKH  137 (183)
Q Consensus        80 -------~l------~~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~  137 (183)
                             .+      ..........++++.+++..+.++++.+|||||+|+      ++.+|+.+   ||....|+..+.
T Consensus       179 ~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~  258 (608)
T 3j16_B          179 AIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRL  258 (608)
T ss_dssp             HCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHH
T ss_pred             hhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHH
Confidence                   00      001112356788999999999999999999999983      37788886   899999999999


Q ss_pred             ccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          138 VFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      .+..++..+..+ ..+|+++|||++++...||+|++++
T Consensus       259 ~l~~~l~~l~~~-g~tvi~vtHdl~~~~~~~drv~vl~  295 (608)
T 3j16_B          259 NAAQIIRSLLAP-TKYVICVEHDLSVLDYLSDFVCIIY  295 (608)
T ss_dssp             HHHHHHHGGGTT-TCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred             HHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEe
Confidence            999999888766 7789999999999999999999996

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.90  E-value=5e-25  Score=192.23  Aligned_cols=160  Identities=11%  Similarity=0.008  Sum_probs=117.2

Q ss_pred             cccc--cceecCc-----cEEEEEcCCCCcHHHHHHHHhcCCCCCCcEE------EEEecCccccccccchheeehhhhc
Q 036195            7 PHLR--YIEDDGV-----KIIGLYGVRGVGKSTLIKQLNDMFSDMSHKF------AIYAVSLQKKISVCSFILIRRAYFF   73 (183)
Q Consensus         7 ~~l~--~l~i~~G-----e~~~liGpNGaGKSTLl~~i~gl~~p~~G~I------~~~g~~~~~~~~~~~~~~l~~~~lg   73 (183)
                      ++++  +|++.+|     |++||+||||||||||+++|+|+++|++|+.      .+..++..   ..+..++.+.+.. 
T Consensus       361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~---~~~~~tv~e~~~~-  436 (608)
T 3j16_B          361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIA---PKFPGTVRQLFFK-  436 (608)
T ss_dssp             EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCC---CCCCSBHHHHHHH-
T ss_pred             cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEeccccc---ccCCccHHHHHHH-
Confidence            3455  4556777     8899999999999999999999999999973      11111110   0000011111100 


Q ss_pred             cCCCCccccccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccccccccccee
Q 036195           74 KLPNLKSICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLI  144 (183)
Q Consensus        74 ~lp~l~~l~~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~  144 (183)
                      ...   .  .........++++.+++..+.++++.+|||||+|+      ++.+|+.+   ||....|+.++..+..++.
T Consensus       437 ~~~---~--~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~  511 (608)
T 3j16_B          437 KIR---G--QFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIR  511 (608)
T ss_dssp             HCS---S--TTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHH
T ss_pred             Hhh---c--ccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence            000   0  00112235678899999999999999999999983      47788886   8999999999999999998


Q ss_pred             ecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          145 ITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      .+..+...+++++|||++++.+.||||++++
T Consensus       512 ~l~~~~g~tviivtHdl~~~~~~aDrvivl~  542 (608)
T 3j16_B          512 RFILHNKKTAFIVEHDFIMATYLADKVIVFE  542 (608)
T ss_dssp             HHHHHHTCEEEEECSCHHHHHHHCSEEEECE
T ss_pred             HHHHhCCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence            8766668899999999999999999999987

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.87  E-value=8.5e-24  Score=197.62  Aligned_cols=161  Identities=13%  Similarity=0.072  Sum_probs=118.4

Q ss_pred             ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195            7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE   84 (183)
Q Consensus         7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~   84 (183)
                      ++|++  |++++||++||+||||||||||+++|+|+++|++|+|.++|.++....    ...+ ...++++||...++..
T Consensus      1047 ~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~----~~~~-r~~i~~v~Q~~~l~~~ 1121 (1284)
T 3g5u_A         1047 PVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLN----VQWL-RAQLGIVSQEPILFDC 1121 (1284)
T ss_dssp             CSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSC----HHHH-TTSCEEEESSCCCCSS
T ss_pred             eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCC----HHHH-HhceEEECCCCccccc
Confidence            58885  569999999999999999999999999999999999999999886421    1111 1235566655433321


Q ss_pred             --------------ccchHHHHHHHHcCCCCccC-----------CCCCCCChhhhhe------ecCchhhc---ccccc
Q 036195           85 --------------ALAFPCLERIYVHGCPSLRK-----------LPFSLESGKRNGV------LIGEEEWW---NQLEW  130 (183)
Q Consensus        85 --------------~~~~~~l~vLe~l~L~~L~~-----------~~~~~LSgGqk~~------i~~~~~w~---~~l~~  130 (183)
                                    .......++++..++.+...           .....|||||||+      +..+|+.+   ||...
T Consensus      1122 ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~ 1201 (1284)
T 3g5u_A         1122 SIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSA 1201 (1284)
T ss_dssp             BHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSS
T ss_pred             cHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence                          11223445555555533222           2346899999984      35677776   88999


Q ss_pred             cCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          131 DDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       131 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      .|+.++..++..+....  ..++++++|||++++ +.|||++++|
T Consensus      1202 lD~~~~~~i~~~l~~~~--~~~tvi~isH~l~~i-~~~dri~vl~ 1243 (1284)
T 3g5u_A         1202 LDTESEKVVQEALDKAR--EGRTCIVIAHRLSTI-QNADLIVVIQ 1243 (1284)
T ss_dssp             CCHHHHHHHHHHHHHHS--SSSCEEEECSCTTGG-GSCSEEEEEE
T ss_pred             CCHHHHHHHHHHHHHhC--CCCEEEEEecCHHHH-HcCCEEEEEE
Confidence            99999999998887543  378999999999986 5599999997

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.87  E-value=3e-24  Score=194.46  Aligned_cols=83  Identities=12%  Similarity=-0.033  Sum_probs=69.5

Q ss_pred             HHHHHHHHcCCCC-c-cCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCcccccCCCCC
Q 036195           89 PCLERIYVHGCPS-L-RKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQP  157 (183)
Q Consensus        89 ~~l~vLe~l~L~~-L-~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  157 (183)
                      .+.++++.+++.. + .++++.+|||||+|+      +..+|+.+   ||....|+..+..+...+...    ..+|+|+
T Consensus       879 ~i~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~----g~tVIiI  954 (986)
T 2iw3_A          879 EIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF----EGGVIII  954 (986)
T ss_dssp             HHHHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC----SSEEEEE
T ss_pred             HHHHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh----CCEEEEE
Confidence            4577889999975 4 688999999999983      36778776   899999998888887777544    3589999


Q ss_pred             CceeeeeecccceEEEEe
Q 036195          158 SYTYEATIRPRYELICID  175 (183)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~  175 (183)
                      |||++++.+.|||+|+++
T Consensus       955 SHD~e~v~~l~DrVivL~  972 (986)
T 2iw3_A          955 THSAEFTKNLTEEVWAVK  972 (986)
T ss_dssp             CSCHHHHTTTCCEEECCB
T ss_pred             ECCHHHHHHhCCEEEEEE
Confidence            999999999999999986

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.85  E-value=3.2e-23  Score=193.70  Aligned_cols=162  Identities=11%  Similarity=0.040  Sum_probs=118.3

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      .++|+++  ++++||++||+||||||||||+++|+|+++|++|+|.++|.++....    ...+ ...+++++|...++.
T Consensus       403 ~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~----~~~~-r~~i~~v~Q~~~l~~  477 (1284)
T 3g5u_A          403 VQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTIN----VRYL-REIIGVVSQEPVLFA  477 (1284)
T ss_dssp             CCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSC----HHHH-HHHEEEECSSCCCCS
T ss_pred             CcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCC----HHHH-HhheEEEcCCCccCC
Confidence            3688855  58999999999999999999999999999999999999999876421    1111 134666666554443


Q ss_pred             c------------ccchHHHHHHHHcCCC-----------CccCCCCCCCChhhhhe------ecCchhhc---cccccc
Q 036195           84 E------------ALAFPCLERIYVHGCP-----------SLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWD  131 (183)
Q Consensus        84 ~------------~~~~~~l~vLe~l~L~-----------~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~  131 (183)
                      .            ....+..++++..++.           .....+...|||||||+      +..+|+.+   |+..-.
T Consensus       478 ~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~L  557 (1284)
T 3g5u_A          478 TTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSAL  557 (1284)
T ss_dssp             SCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSS
T ss_pred             ccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCC
Confidence            2            1112334444444332           22344567899999984      35677775   889999


Q ss_pred             CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      |+++...++..+....  ..+++++++|+++.+.. ||+++++|
T Consensus       558 D~~~~~~i~~~l~~~~--~~~t~i~itH~l~~i~~-~d~i~vl~  598 (1284)
T 3g5u_A          558 DTESEAVVQAALDKAR--EGRTTIVIAHRLSTVRN-ADVIAGFD  598 (1284)
T ss_dssp             CHHHHHHHHHHHHHHH--TTSEEEEECSCHHHHTT-CSEEEECS
T ss_pred             CHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHHc-CCEEEEEE
Confidence            9998888888776543  36899999999998755 99999996

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.84  E-value=1.4e-22  Score=178.88  Aligned_cols=168  Identities=15%  Similarity=0.021  Sum_probs=102.9

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHH---------------------HHHhcCCCCCCc-------EEEEEecCc
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLI---------------------KQLNDMFSDMSH-------KFAIYAVSL   55 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl---------------------~~i~gl~~p~~G-------~I~~~g~~~   55 (183)
                      ..+|+++  +|++||++||+||||||||||+                     ++++|+.+|+.|       .|.+++.+.
T Consensus        31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~  110 (670)
T 3ux8_A           31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT  110 (670)
T ss_dssp             STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred             ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence            4578754  5899999999999999999998                     999999999854       445554433


Q ss_pred             cccc----cc-cchhee-e--hhhhccCCC--------------Ccccc------c---c------ccchHHHHHHHHcC
Q 036195           56 QKKI----SV-CSFILI-R--RAYFFKLPN--------------LKSIC------H---E------ALAFPCLERIYVHG   98 (183)
Q Consensus        56 ~~~~----~~-~~~~~l-~--~~~lg~lp~--------------l~~l~------~---~------~~~~~~l~vLe~l~   98 (183)
                      ....    .. ...... .  ...++++++              ...++      .   .      .........++.++
T Consensus       111 ~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  190 (670)
T 3ux8_A          111 SRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVG  190 (670)
T ss_dssp             ----CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHTT
T ss_pred             hccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHcC
Confidence            2110    00 000000 0  000000000              00000      0   0      00112234578889


Q ss_pred             CCCc-cCCCCCCCChhhhhe------ecCchh--hc---ccccccCcccccccccceeecCcccccCCCCCCceeeeeec
Q 036195           99 CPSL-RKLPFSLESGKRNGV------LIGEEE--WW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIR  166 (183)
Q Consensus        99 L~~L-~~~~~~~LSgGqk~~------i~~~~~--w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (183)
                      +..+ .++++.+|||||+|+      ++.+|+  .+   ||....|+..+..+..++..+..+ ..+|+++|||++++ .
T Consensus       191 L~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~-g~tvi~vtHd~~~~-~  268 (670)
T 3ux8_A          191 LDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDL-GNTLIVVEHDEDTM-L  268 (670)
T ss_dssp             CTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHT-TCEEEEECCCHHHH-H
T ss_pred             CchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHH-h
Confidence            8875 689999999999983      366776  65   899999999999999999988654 88999999999964 5


Q ss_pred             ccceEEEEe
Q 036195          167 PRYELICID  175 (183)
Q Consensus       167 ~~~~~~~~~  175 (183)
                      .||++++++
T Consensus       269 ~~d~ii~l~  277 (670)
T 3ux8_A          269 AADYLIDIG  277 (670)
T ss_dssp             HCSEEEEEC
T ss_pred             hCCEEEEec
Confidence            699999993

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.83  E-value=9.3e-22  Score=184.30  Aligned_cols=163  Identities=15%  Similarity=0.094  Sum_probs=122.0

Q ss_pred             cccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccc
Q 036195            5 YRPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSIC   82 (183)
Q Consensus         5 ~~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~   82 (183)
                      .+++|+++  ++++|+.+||+||+|||||||+++|.|+++|++|+|.++|.++.+..    ... -+..+++++|...++
T Consensus       430 ~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~----~~~-lr~~i~~v~Q~~~Lf  504 (1321)
T 4f4c_A          430 DVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDIN----LEF-LRKNVAVVSQEPALF  504 (1321)
T ss_dssp             TSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSC----HHH-HHHHEEEECSSCCCC
T ss_pred             CCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhcc----HHH-HhhcccccCCcceee
Confidence            35789855  58999999999999999999999999999999999999999876531    111 113466777766554


Q ss_pred             cc------------ccchHHHHHHHHcCCCC-----------ccCCCCCCCChhhhhee------cCchhhc---ccccc
Q 036195           83 HE------------ALAFPCLERIYVHGCPS-----------LRKLPFSLESGKRNGVL------IGEEEWW---NQLEW  130 (183)
Q Consensus        83 ~~------------~~~~~~l~vLe~l~L~~-----------L~~~~~~~LSgGqk~~i------~~~~~w~---~~l~~  130 (183)
                      ..            ....++.++++..++.+           ........|||||||+|      ..+|+.+   |+++-
T Consensus       505 ~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSa  584 (1321)
T 4f4c_A          505 NCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSA  584 (1321)
T ss_dssp             SEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred             CCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEeccccc
Confidence            32            22335666666665522           22234467999999943      6666665   88999


Q ss_pred             cCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          131 DDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       131 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      .|..++..++..+..+.  ..+++++++|.+. +++.+|++|++|
T Consensus       585 LD~~te~~i~~~l~~~~--~~~T~iiiaHrls-~i~~aD~Iivl~  626 (1321)
T 4f4c_A          585 LDAESEGIVQQALDKAA--KGRTTIIIAHRLS-TIRNADLIISCK  626 (1321)
T ss_dssp             SCTTTHHHHHHHHHHHH--TTSEEEEECSCTT-TTTTCSEEEEEE
T ss_pred             CCHHHHHHHHHHHHHHh--CCCEEEEEcccHH-HHHhCCEEEEee
Confidence            99998888888876543  3688999999998 678999999997

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.83  E-value=1.4e-21  Score=183.12  Aligned_cols=162  Identities=10%  Similarity=0.032  Sum_probs=119.1

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      .+||+++  +|++||.+||+||||||||||+++|.|++.|++|+|.++|.++.+..    ...+ +..++++||...+|.
T Consensus      1092 ~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~----~~~l-R~~i~~V~Qdp~LF~ 1166 (1321)
T 4f4c_A         1092 IEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLN----PEHT-RSQIAIVSQEPTLFD 1166 (1321)
T ss_dssp             SCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBC----HHHH-HTTEEEECSSCCCCS
T ss_pred             CccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCC----HHHH-HhheEEECCCCEeeC
Confidence            3689855  59999999999999999999999999999999999999999887531    1111 134566676554443


Q ss_pred             c--------------ccchHHHHHHHHcCCCC-------ccCCC----CCCCChhhhhee------cCchhhc---cccc
Q 036195           84 E--------------ALAFPCLERIYVHGCPS-------LRKLP----FSLESGKRNGVL------IGEEEWW---NQLE  129 (183)
Q Consensus        84 ~--------------~~~~~~l~vLe~l~L~~-------L~~~~----~~~LSgGqk~~i------~~~~~w~---~~l~  129 (183)
                      .              ..+.++.++++..++.+       -.+.+    ...|||||||+|      ..+|..+   |+.+
T Consensus      1167 gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTS 1246 (1321)
T 4f4c_A         1167 CSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATS 1246 (1321)
T ss_dssp             EEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCC
T ss_pred             ccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccc
Confidence            1              12345667777776632       22222    356999999843      5566665   7788


Q ss_pred             ccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          130 WDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       130 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      -.|+++...++..+....  ..+++++++|.++. ++.||+|+++|
T Consensus      1247 aLD~~tE~~Iq~~l~~~~--~~~TvI~IAHRLsT-i~~aD~I~Vld 1289 (1321)
T 4f4c_A         1247 ALDTESEKVVQEALDRAR--EGRTCIVIAHRLNT-VMNADCIAVVS 1289 (1321)
T ss_dssp             STTSHHHHHHHHHHTTTS--SSSEEEEECSSSST-TTTCSEEEEES
T ss_pred             cCCHHHHHHHHHHHHHHc--CCCEEEEeccCHHH-HHhCCEEEEEE
Confidence            889888888777765443  26899999999975 56799999997

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.81  E-value=1e-21  Score=177.98  Aligned_cols=155  Identities=12%  Similarity=0.080  Sum_probs=108.0

Q ss_pred             ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhc-CCC--C--CCcEEEEEecCccccccccchheeehhhhccCCCC
Q 036195            6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLND-MFS--D--MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNL   78 (183)
Q Consensus         6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~g-l~~--p--~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l   78 (183)
                      +++|+  ||++++||+++|+||||||||||+|+|+| .+.  +  ....+.+..++...  .....+..+.+..    ..
T Consensus       448 ~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~--~~~~ltv~e~l~~----~~  521 (986)
T 2iw3_A          448 KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDG--THSDTSVLDFVFE----SG  521 (986)
T ss_dssp             EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCC--CCTTSBHHHHHHT----TC
T ss_pred             EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccccc--cccCCcHHHHHHH----hh
Confidence            45777  55689999999999999999999999995 110  0  00011110000000  0000011111110    00


Q ss_pred             ccccccccchHHHHHHHHcCCC-CccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceeecCc
Q 036195           79 KSICHEALAFPCLERIYVHGCP-SLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLIITTP  148 (183)
Q Consensus        79 ~~l~~~~~~~~~l~vLe~l~L~-~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~  148 (183)
                         . .. ...+.++++.+++. .+.++++.+|||||+|+      +..+|+.+   ||....|+..+..+..++..   
T Consensus       522 ---~-~~-~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---  593 (986)
T 2iw3_A          522 ---V-GT-KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---  593 (986)
T ss_dssp             ---S-SC-HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---
T ss_pred             ---c-CH-HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---
Confidence               0 01 34567889999995 68899999999999983      47788887   89999999999999988876   


Q ss_pred             ccccCCCCCCceeeeeecccceEEEEe
Q 036195          149 QTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                       ...+++++|||++++.+.||+++.|+
T Consensus       594 -~g~tvIivSHdl~~l~~~adrii~L~  619 (986)
T 2iw3_A          594 -CGITSITISHDSVFLDNVCEYIINYE  619 (986)
T ss_dssp             -SCSEEEEECSCHHHHHHHCSEEEEEE
T ss_pred             -CCCEEEEEECCHHHHHHhCCEEEEEE
Confidence             37899999999999999999999986

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.77  E-value=1.1e-20  Score=166.82  Aligned_cols=84  Identities=12%  Similarity=-0.023  Sum_probs=68.1

Q ss_pred             HHHHHHHcCCCC-ccCCCCCCCChhhhhe------ecCch---hhc---ccccccCcccccccccceeecCcccccCCCC
Q 036195           90 CLERIYVHGCPS-LRKLPFSLESGKRNGV------LIGEE---EWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQ  156 (183)
Q Consensus        90 ~l~vLe~l~L~~-L~~~~~~~LSgGqk~~------i~~~~---~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~  156 (183)
                      ..+.++.+++.. ..++++.+|||||+|+      ++.+|   +.+   ||....|+..+..+..++..+..+ ..+|++
T Consensus       523 ~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~-g~tvi~  601 (670)
T 3ux8_A          523 KLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN-GDTVLV  601 (670)
T ss_dssp             HHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEE
T ss_pred             HHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEE
Confidence            456677788864 4688999999999983      24444   354   899999999999999999888655 889999


Q ss_pred             CCceeeeeecccceEEEEe
Q 036195          157 PSYTYEATIRPRYELICID  175 (183)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~  175 (183)
                      +|||++++ +.||||++++
T Consensus       602 vtHd~~~~-~~~d~i~~l~  619 (670)
T 3ux8_A          602 IEHNLDVI-KTADYIIDLG  619 (670)
T ss_dssp             ECCCHHHH-TTCSEEEEEE
T ss_pred             EeCCHHHH-HhCCEEEEec
Confidence            99999976 6699999994

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=99.76  E-value=1.4e-21  Score=165.76  Aligned_cols=155  Identities=11%  Similarity=-0.037  Sum_probs=100.0

Q ss_pred             cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCc-E-EEEEecCcccccccc-ch----h---eeehhhhccCCCCcc
Q 036195           11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSH-K-FAIYAVSLQKKISVC-SF----I---LIRRAYFFKLPNLKS   80 (183)
Q Consensus        11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G-~-I~~~g~~~~~~~~~~-~~----~---~l~~~~lg~lp~l~~   80 (183)
                      +|++++|++++|+||||||||||+|+|+|+.+|++| + |.++|. ........ ..    +   ........+....  
T Consensus       132 sl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~-~~~~i~~vpq~~~l~~~~~~~tv~eni~~~~~--  208 (460)
T 2npi_A          132 RMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD-PQQPIFTVPGCISATPISDILDAQLPTWGQSL--  208 (460)
T ss_dssp             HHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC-TTSCSSSCSSCCEEEECCSCCCTTCTTCSCBC--
T ss_pred             ceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC-ccCCeeeeccchhhcccccccchhhhhccccc--
Confidence            566899999999999999999999999999999999 9 999983 22211110 00    0   0000000000000  


Q ss_pred             ccccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe--------ecCchhh----c---c-cccccCccccccccccee
Q 036195           81 ICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV--------LIGEEEW----W---N-QLEWDDEATKHVFSSKLI  144 (183)
Q Consensus        81 l~~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~--------i~~~~~w----~---~-~l~~~d~~~~~~~~~~~~  144 (183)
                      ...........++++.+++....+  +.+|||||+|+        +..+|+.    +   | |+...|+. +..+..++.
T Consensus       209 ~~~~~~~~~~~~ll~~~gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~  285 (460)
T 2npi_A          209 TSGATLLHNKQPMVKNFGLERINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIE  285 (460)
T ss_dssp             BSSCCSSCCBCCEECCCCSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHH
T ss_pred             ccCcchHHHHHHHHHHhCCCcccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHH
Confidence            000001112344567778877666  78999999983        3455666    4   6 78877877 444443333


Q ss_pred             ecCcccccCCCCCCceee------eeecccce-----EEEEe
Q 036195          145 ITTPQTVISIPQPSYTYE------ATIRPRYE-----LICID  175 (183)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~------~~~~~~~~-----~~~~~  175 (183)
                          +...++++++||.+      ++.+.||+     |+.++
T Consensus       286 ----~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~  323 (460)
T 2npi_A          286 ----KLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIP  323 (460)
T ss_dssp             ----HTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEEC
T ss_pred             ----HhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEe
Confidence                33567899999988      77899999     99997

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=99.75  E-value=9.4e-22  Score=150.13  Aligned_cols=156  Identities=15%  Similarity=0.113  Sum_probs=86.2

Q ss_pred             cccccccceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcc----
Q 036195            5 YRPHLRYIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKS----   80 (183)
Q Consensus         5 ~~~~l~~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~----   80 (183)
                      .++++.+.++++||+++|+||||||||||+|+|+|+++...+.+.+.+.+....         ....++++++...    
T Consensus         8 ~~~~~~~~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~---------~~~~i~~~~q~~~~~~~   78 (207)
T 1znw_A            8 TKPTARGQPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPG---------EVDGVDYHFIDPTRFQQ   78 (207)
T ss_dssp             -----------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTT---------CCBTTTBEECCHHHHHH
T ss_pred             CCcCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCccc---------ccCCCeeEecCHHHHHH
Confidence            567888889999999999999999999999999999863222221111111000         0011111111100    


Q ss_pred             ------------ccc-----cccchHH----HHH------HHHcCCCCccCCCCCCCChhhhheecCchhhc---ccccc
Q 036195           81 ------------ICH-----EALAFPC----LER------IYVHGCPSLRKLPFSLESGKRNGVLIGEEEWW---NQLEW  130 (183)
Q Consensus        81 ------------l~~-----~~~~~~~----l~v------Le~l~L~~L~~~~~~~LSgGqk~~i~~~~~w~---~~l~~  130 (183)
                                  ++.     .......    .+.      ++.+++..++++++..||     .+..+|...   +++..
T Consensus        79 ~~~~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS-----~l~~~p~~~~LDep~~~  153 (207)
T 1znw_A           79 LIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVT-----VFLAPPSWQDLQARLIG  153 (207)
T ss_dssp             HHHTTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEE-----EEEECSCHHHHHHHHHT
T ss_pred             HHhcCCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEE-----EEEECCCHHHHHHHHHh
Confidence                        000     0000111    111      333444455566666666     455566553   45555


Q ss_pred             c----CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEE
Q 036195          131 D----DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICI  174 (183)
Q Consensus       131 ~----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (183)
                      .    |+..+..+..++..+..+...++++++||++++.+.||+++++
T Consensus       154 l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l  201 (207)
T 1znw_A          154 RGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVG  201 (207)
T ss_dssp             TSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC-
T ss_pred             cCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHh
Confidence            3    5567778888877776666889999999999999999999886

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.71  E-value=1.2e-19  Score=162.87  Aligned_cols=84  Identities=12%  Similarity=0.004  Sum_probs=71.1

Q ss_pred             HHHHHHHcCCCCc-cCCCCCCCChhhhhe------ecCc---hhhc---ccccccCcccccccccceeecCcccccCCCC
Q 036195           90 CLERIYVHGCPSL-RKLPFSLESGKRNGV------LIGE---EEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQ  156 (183)
Q Consensus        90 ~l~vLe~l~L~~L-~~~~~~~LSgGqk~~------i~~~---~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~  156 (183)
                      ..++++.+++..+ .++++.+|||||+|+      +..+   |+.+   ||....|+..+..+..++..+..+ ..+|++
T Consensus       710 ~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~-G~tVIv  788 (842)
T 2vf7_A          710 ALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA-GNTVIA  788 (842)
T ss_dssp             HHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT-TCEEEE
T ss_pred             HHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEE
Confidence            4678889999874 689999999999983      2443   5665   899999999999999999888655 889999


Q ss_pred             CCceeeeeecccceEEEEe
Q 036195          157 PSYTYEATIRPRYELICID  175 (183)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~  175 (183)
                      +|||++++ +.||++|.++
T Consensus       789 isHdl~~i-~~aDrii~L~  806 (842)
T 2vf7_A          789 VEHKMQVV-AASDWVLDIG  806 (842)
T ss_dssp             ECCCHHHH-TTCSEEEEEC
T ss_pred             EcCCHHHH-HhCCEEEEEC
Confidence            99999998 8899999884

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.70  E-value=9.3e-19  Score=157.99  Aligned_cols=84  Identities=12%  Similarity=-0.022  Sum_probs=70.3

Q ss_pred             HHHHHHHcCCCC-ccCCCCCCCChhhhhe------ecCc---hhhc---ccccccCcccccccccceeecCcccccCCCC
Q 036195           90 CLERIYVHGCPS-LRKLPFSLESGKRNGV------LIGE---EEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQ  156 (183)
Q Consensus        90 ~l~vLe~l~L~~-L~~~~~~~LSgGqk~~------i~~~---~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~  156 (183)
                      ..++++.+++.. ..++++.+|||||+|+      +..+   |+.+   ||....|+..+..+..++..+..+ ..+|++
T Consensus       825 ~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~-G~TVIv  903 (972)
T 2r6f_A          825 KLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN-GDTVLV  903 (972)
T ss_dssp             HHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT-TCEEEE
T ss_pred             HHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEE
Confidence            457788999987 7889999999999983      2433   3665   899999999999999999887654 889999


Q ss_pred             CCceeeeeecccceEEEEe
Q 036195          157 PSYTYEATIRPRYELICID  175 (183)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~  175 (183)
                      +|||++++ +.||+||.++
T Consensus       904 isHdl~~i-~~aDrIivL~  921 (972)
T 2r6f_A          904 IEHNLDVI-KTADYIIDLG  921 (972)
T ss_dssp             ECCCHHHH-TTCSEEEEEC
T ss_pred             EcCCHHHH-HhCCEEEEEc
Confidence            99999985 7899999984

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.68  E-value=1.4e-19  Score=134.28  Aligned_cols=132  Identities=11%  Similarity=-0.021  Sum_probs=77.1

Q ss_pred             cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc-cccccccch-
Q 036195           11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK-SICHEALAF-   88 (183)
Q Consensus        11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~-~l~~~~~~~-   88 (183)
                      ||++++||+++|+||||||||||++++.+      |...+....+.                +++++.. ...-....+ 
T Consensus         3 sl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~~~~d~~~----------------g~~~~~~~~~~~~~~~~~   60 (171)
T 4gp7_A            3 KLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEVISSDFCR----------------GLMSDDENDQTVTGAAFD   60 (171)
T ss_dssp             EEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGEEEHHHHH----------------HHHCSSTTCGGGHHHHHH
T ss_pred             cccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeEEccHHHH----------------HHhcCcccchhhHHHHHH
Confidence            67899999999999999999999996432      11111111000                1111100 000000000 


Q ss_pred             ---HHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcc----------------cccccc
Q 036195           89 ---PCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEA----------------TKHVFS  140 (183)
Q Consensus        89 ---~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~----------------~~~~~~  140 (183)
                         .........+.....+.. ...|+||+|+      +..+|+.+   ||++.-|+.                .+..+.
T Consensus        61 ~~~~~~~~~~~~g~~~~~~~~-~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~  139 (171)
T 4gp7_A           61 VLHYIVSKRLQLGKLTVVDAT-NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMK  139 (171)
T ss_dssp             HHHHHHHHHHHTTCCEEEESC-CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCeEEEECC-CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhh
Confidence               111122233444333433 4459998872      36677775   888888887                445566


Q ss_pred             cceeecCcccccCCCCCCceeeeeec
Q 036195          141 SKLIITTPQTVISIPQPSYTYEATIR  166 (183)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (183)
                      ..+..+..+ ..+++++|||++++.+
T Consensus       140 ~~l~~l~~~-g~tvi~vtH~~~~~~~  164 (171)
T 4gp7_A          140 KSIKGLQRE-GFRYVYILNSPEEVEE  164 (171)
T ss_dssp             HHSTTHHHH-TCSEEEEECSHHHHHH
T ss_pred             hhhhhHHhc-CCcEEEEeCCHHHhhh
Confidence            666666555 8899999999998764

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.68  E-value=1.3e-20  Score=162.24  Aligned_cols=164  Identities=9%  Similarity=-0.142  Sum_probs=105.0

Q ss_pred             ccccc--cc-eecCccEEEEEcCCCCcHHHHHHH--HhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcc
Q 036195            6 RPHLR--YI-EDDGVKIIGLYGVRGVGKSTLIKQ--LNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKS   80 (183)
Q Consensus         6 ~~~l~--~l-~i~~Ge~~~liGpNGaGKSTLl~~--i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~   80 (183)
                      .++|+  ++ .+++||+++|+||||||||||+++  ++|+.+|++|.|++.|.+.....     .. ....+++.++...
T Consensus        25 ~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~-----~~-~~~~~g~~~q~~~   98 (525)
T 1tf7_A           25 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDI-----IK-NARSFGWDLAKLV   98 (525)
T ss_dssp             CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHH-----HH-HHGGGTCCHHHHH
T ss_pred             chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHH-----HH-HHHHcCCChHHhh
Confidence            35676  45 679999999999999999999999  78999999999999998742210     00 0011222211100


Q ss_pred             ----ccc-c-ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe-ecCchhhcccccccCcccccccccceeecCcccccC
Q 036195           81 ----ICH-E-ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV-LIGEEEWWNQLEWDDEATKHVFSSKLIITTPQTVIS  153 (183)
Q Consensus        81 ----l~~-~-~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~-i~~~~~w~~~l~~~d~~~~~~~~~~~~~~~~~~~~~  153 (183)
                          ++. . .......++++.+++..+.++.+.+||+||+++ +..++.=..+....|+..+..+..++..++. ..++
T Consensus        99 ~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~-~g~t  177 (525)
T 1tf7_A           99 DEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQ-IGAT  177 (525)
T ss_dssp             HTTSEEEEECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHH-HTCE
T ss_pred             ccCcEEEEecCcccchhhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHH-CCCE
Confidence                000 0 000001112233444456667788899999884 3333322222234567778888888888866 4899


Q ss_pred             CCCCCceeeee--------e-cccceEEEEee
Q 036195          154 IPQPSYTYEAT--------I-RPRYELICIDV  176 (183)
Q Consensus       154 ~~~~~~~~~~~--------~-~~~~~~~~~~~  176 (183)
                      +++++|+++++        . ..||+|++++-
T Consensus       178 vl~itH~~~~~~~~~~~~i~~~laD~vi~L~~  209 (525)
T 1tf7_A          178 TVMTTERIEEYGPIARYGVEEFVSDNVVILRN  209 (525)
T ss_dssp             EEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred             EEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence            99999999986        3 34999999964

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.67  E-value=9.1e-19  Score=134.13  Aligned_cols=129  Identities=12%  Similarity=-0.083  Sum_probs=74.3

Q ss_pred             ccccccceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCc--cc--
Q 036195            6 RPHLRYIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK--SI--   81 (183)
Q Consensus         6 ~~~l~~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~--~l--   81 (183)
                      +++|+++  ++||+++|+||||||||||+++|+|+ +|++|+|...  ++...      .......++++++..  .+  
T Consensus        13 ~~~l~~i--~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~--~~~~~------~~~~~~~ig~v~q~~~enl~~   81 (208)
T 3b85_A           13 KHYVDAI--DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRI--ILTRP------AVEAGEKLGFLPGTLNEKIDP   81 (208)
T ss_dssp             HHHHHHH--HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEE--EEEEC------SCCTTCCCCSSCC------CT
T ss_pred             HHHHHhc--cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeE--EecCC------chhhhcceEEecCCHHHHHHH
Confidence            3566764  89999999999999999999999999 9999999532  11110      000012344554432  00  


Q ss_pred             c---------ccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccce
Q 036195           82 C---------HEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKL  143 (183)
Q Consensus        82 ~---------~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~  143 (183)
                      +         .........++++.              +.||+|+      +..+|+.+   ||...    .+..+..++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~l~~--------------glGq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l  143 (208)
T 3b85_A           82 YLRPLHDALRDMVEPEVIPKLMEA--------------GIVEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFL  143 (208)
T ss_dssp             TTHHHHHHHTTTSCTTHHHHHHHT--------------TSEEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHh--------------CCchHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHH
Confidence            0         00000112222322              1298873      36778776   66765    666666666


Q ss_pred             eecCcccccCCCCCCceeeeeec
Q 036195          144 IITTPQTVISIPQPSYTYEATIR  166 (183)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~  166 (183)
                      ..+ .+ ..+++ +|||++.+..
T Consensus       144 ~~l-~~-g~tii-vtHd~~~~~~  163 (208)
T 3b85_A          144 TRL-GF-GSKMV-VTGDITQVDL  163 (208)
T ss_dssp             TTB-CT-TCEEE-EEEC------
T ss_pred             HHh-cC-CCEEE-EECCHHHHhC
Confidence            666 33 67788 9999987764

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=99.65  E-value=7.4e-17  Score=129.95  Aligned_cols=134  Identities=12%  Similarity=-0.010  Sum_probs=83.0

Q ss_pred             ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      .++|+  +|+|++|++++|+||||||||||+++|+|++   +|+|.........   .+..+..+ ..+.+      . .
T Consensus       113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~~v~q~~~---lf~~ti~~-~ni~~------~-~  178 (305)
T 2v9p_A          113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVLSFANHKSH---FWLASLAD-TRAAL------V-D  178 (305)
T ss_dssp             HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEECGGGTTSG---GGGGGGTT-CSCEE------E-E
T ss_pred             hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEEEEecCccc---cccccHHH-Hhhcc------C-c
Confidence            35677  4569999999999999999999999999998   8999654321100   00001100 01111      1 1


Q ss_pred             cccchHHHHHHHHcCCCCccCCCCCCCChhhhhe---ecCchhhcccccccCcccccccccceeecCcccccCCCCCCce
Q 036195           84 EALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV---LIGEEEWWNQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYT  160 (183)
Q Consensus        84 ~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~---i~~~~~w~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (183)
                      .. .....+.++.+ ++...+  ...|||||||+   +..+|..+= ....|+.++..+..               .+|+
T Consensus       179 ~~-~~~~~~~i~~~-L~~gld--g~~LSgGqkQRARAll~~p~iLl-Ts~LD~~~~~~i~~---------------ltH~  238 (305)
T 2v9p_A          179 DA-THACWRYFDTY-LRNALD--GYPVSIDRKHKAAVQIKAPPLLV-TSNIDVQAEDRYLY---------------LHSR  238 (305)
T ss_dssp             EE-CHHHHHHHHHT-TTGGGG--TCCEECCCSSCCCCEECCCCEEE-EESSCSTTCGGGGG---------------GTTT
T ss_pred             cc-cHHHHHHHHHH-hHccCC--ccCcCHHHHHHHHHHhCCCCEEE-ECCCCHHHHHHHHH---------------HhCC
Confidence            11 11344555553 444334  67899999983   455555433 66667666666541               2899


Q ss_pred             eeeeecccceEEEEe
Q 036195          161 YEATIRPRYELICID  175 (183)
Q Consensus       161 ~~~~~~~~~~~~~~~  175 (183)
                      +.. ++.+|++ +++
T Consensus       239 ~~~-~~~aD~i-vl~  251 (305)
T 2v9p_A          239 VQT-FRFEQPC-TDE  251 (305)
T ss_dssp             EEE-EECCCCC-CCC
T ss_pred             HHH-HHhCCEE-EEe
Confidence            876 5789999 664

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=99.65  E-value=7.2e-18  Score=140.65  Aligned_cols=62  Identities=6%  Similarity=-0.164  Sum_probs=51.4

Q ss_pred             CChhhhhe------ecCch--hhc---ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEE
Q 036195          110 ESGKRNGV------LIGEE--EWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICI  174 (183)
Q Consensus       110 LSgGqk~~------i~~~~--~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (183)
                      +||||+|+      ++.+|  ..+   |+....|+..+..+..++..+. + ..+++++||+.++ ++.||+++++
T Consensus       296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~-~~~vi~itH~~~~-~~~~d~i~~l  368 (415)
T 4aby_A          296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-D-TRQVLVVTHLAQI-AARAHHHYKV  368 (415)
T ss_dssp             SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-T-TSEEEEECSCHHH-HTTCSEEEEE
T ss_pred             cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-C-CCEEEEEeCcHHH-HhhcCeEEEE
Confidence            59999983      24555  554   8899999999999999998876 4 7899999999965 5789999999

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=99.64  E-value=1.1e-18  Score=143.23  Aligned_cols=159  Identities=13%  Similarity=0.004  Sum_probs=93.8

Q ss_pred             ccccc-ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccccc
Q 036195            7 PHLRY-IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHEA   85 (183)
Q Consensus         7 ~~l~~-l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~~   85 (183)
                      +++++ |+|.+|+++||+||||||||||+++|+|+.+|+.|.|.+.|++..........  .....+.+  ......+..
T Consensus        60 ~ald~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~--~~~~~~~~--~v~~~~~~~  135 (347)
T 2obl_A           60 RAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLAL--LPQSTLSK--CVLVVTTSD  135 (347)
T ss_dssp             HHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTT--SCHHHHTT--EEEEEECTT
T ss_pred             EEEEeeeeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHh--hhhhhhhc--eEEEEECCC
Confidence            45654 57899999999999999999999999999999999999988753211000000  00000000  000011110


Q ss_pred             c--chHHHHHHHHcCCCCc-cC---------CCCCCCChhhhh-ee-cCchhhcccccccCcccccccccceeecCc-cc
Q 036195           86 L--AFPCLERIYVHGCPSL-RK---------LPFSLESGKRNG-VL-IGEEEWWNQLEWDDEATKHVFSSKLIITTP-QT  150 (183)
Q Consensus        86 ~--~~~~l~vLe~l~L~~L-~~---------~~~~~LSgGqk~-~i-~~~~~w~~~l~~~d~~~~~~~~~~~~~~~~-~~  150 (183)
                      .  .......+..+.+.+. ++         ..+..+|+||++ .+ .++|..   ...-|+.....+..++..... +.
T Consensus       136 ~~~~~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~r~v~lal~~p~~---t~Gldp~~~~~l~~ller~~~~~~  212 (347)
T 2obl_A          136 RPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAARDVGLASGEPDV---RGGFPPSVFSSLPKLLERAGPAPK  212 (347)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHHHHHHHHTTCCCC---BTTBCHHHHHHHHHHHTTCEECSS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHHHHHHHHcCCCCc---ccCCCHHHHHHHHHHHHHHhCCCC
Confidence            0  1111111111111111 11         456788999955 33 444443   567788887777777766653 33


Q ss_pred             cc-----CCCCCCceeeeeecccceEEEE
Q 036195          151 VI-----SIPQPSYTYEATIRPRYELICI  174 (183)
Q Consensus       151 ~~-----~~~~~~~~~~~~~~~~~~~~~~  174 (183)
                      ..     +|++++||+.  ...||+++.|
T Consensus       213 GsiT~~~tVl~~thdl~--~~i~d~v~~i  239 (347)
T 2obl_A          213 GSITAIYTVLLESDNVN--DPIGDEVRSI  239 (347)
T ss_dssp             SEEEEEEEEECCSSCCC--CHHHHHHHHH
T ss_pred             CCeeeEEEEEEeCCCCC--ChhhhheEEe
Confidence            44     8999999998  6778887665

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.63  E-value=5.8e-17  Score=146.59  Aligned_cols=85  Identities=8%  Similarity=-0.049  Sum_probs=68.4

Q ss_pred             HHHHHHHHcCCCCc-cCCCCCCCChhhhhee------cCc---hhhc---ccccccCcccccccccceeecCcccccCCC
Q 036195           89 PCLERIYVHGCPSL-RKLPFSLESGKRNGVL------IGE---EEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIP  155 (183)
Q Consensus        89 ~~l~vLe~l~L~~L-~~~~~~~LSgGqk~~i------~~~---~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~  155 (183)
                      ..+++++.+++..+ .++++.+|||||+|+|      ..+   |..+   ||....|+..+..+...+..+..+ ..+|+
T Consensus       784 ~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~-G~TVI  862 (916)
T 3pih_A          784 RTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDR-GNTVI  862 (916)
T ss_dssp             HHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEE
T ss_pred             HHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-CCEEE
Confidence            34677888888754 5789999999999843      333   3454   899999999999999999887654 88999


Q ss_pred             CCCceeeeeecccceEEEEe
Q 036195          156 QPSYTYEATIRPRYELICID  175 (183)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ++|||++++ +.||+||.+.
T Consensus       863 vI~HdL~~i-~~ADrIivLg  881 (916)
T 3pih_A          863 VIEHNLDVI-KNADHIIDLG  881 (916)
T ss_dssp             EECCCHHHH-TTCSEEEEEE
T ss_pred             EEeCCHHHH-HhCCEEEEec
Confidence            999999875 5699999984

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.63  E-value=2.1e-18  Score=144.27  Aligned_cols=159  Identities=11%  Similarity=0.006  Sum_probs=99.7

Q ss_pred             cccccc--ceecCcc--------------------EEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccc
Q 036195            6 RPHLRY--IEDDGVK--------------------IIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCS   63 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge--------------------~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~   63 (183)
                      +.++++  +++++|+                    ++||+||||||||||+|+|+|+.+|++|+|.++|.+.........
T Consensus        36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q  115 (413)
T 1tq4_A           36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK  115 (413)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE
T ss_pred             HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc
Confidence            345664  4589999                    999999999999999999999999999999998876532100000


Q ss_pred             hheeehhhhccCCCCccccccccchHHHHHHHHcCCCCccCCCCCCCChh--hhhe------ecC----------chhhc
Q 036195           64 FILIRRAYFFKLPNLKSICHEALAFPCLERIYVHGCPSLRKLPFSLESGK--RNGV------LIG----------EEEWW  125 (183)
Q Consensus        64 ~~~l~~~~lg~lp~l~~l~~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgG--qk~~------i~~----------~~~w~  125 (183)
                      .+......+...+...   .  ......++++.+++......+.  +|+|  |+++      +..          +|+.+
T Consensus       116 ~~~~~~ltv~D~~g~~---~--~~~~~~~~L~~~~L~~~~~~~~--lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdll  188 (413)
T 1tq4_A          116 HPNIPNVVFWDLPGIG---S--TNFPPDTYLEKMKFYEYDFFII--ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSD  188 (413)
T ss_dssp             CSSCTTEEEEECCCGG---G--SSCCHHHHHHHTTGGGCSEEEE--EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHH
T ss_pred             ccccCCeeehHhhccc---c--hHHHHHHHHHHcCCCccCCeEE--eCCCCccHHHHHHHHHHHhcCCCeEEEEecCccc
Confidence            0000000000011110   0  1234677888888876544443  9999  8762      233          66665


Q ss_pred             ---ccccccCcccccccccceeecCc--------ccccCCCCCCceeee--eecccceE
Q 036195          126 ---NQLEWDDEATKHVFSSKLIITTP--------QTVISIPQPSYTYEA--TIRPRYEL  171 (183)
Q Consensus       126 ---~~l~~~d~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~--~~~~~~~~  171 (183)
                         ||....|+..+..+...+..+..        .....+++.||+++.  +-..+|++
T Consensus       189 lLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I  247 (413)
T 1tq4_A          189 ITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL  247 (413)
T ss_dssp             HHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred             ccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence               78899999888888877776631        112447788998876  54555544

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=99.62  E-value=1.5e-18  Score=133.52  Aligned_cols=42  Identities=33%  Similarity=0.408  Sum_probs=34.0

Q ss_pred             cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcc
Q 036195           11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ   56 (183)
Q Consensus        11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~   56 (183)
                      ||++++|++++|+||||||||||+++|+|++ |  |+|.+ |.++.
T Consensus        17 sl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~   58 (218)
T 1z6g_A           17 RGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCT   58 (218)
T ss_dssp             -----CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEE
T ss_pred             ceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eeccc
Confidence            5569999999999999999999999999998 6  99999 76553

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=99.58  E-value=1.1e-17  Score=141.12  Aligned_cols=162  Identities=10%  Similarity=-0.079  Sum_probs=95.5

Q ss_pred             ccccc-ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEec---CccccccccchheeehhhhccCCCC-ccc
Q 036195            7 PHLRY-IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAV---SLQKKISVCSFILIRRAYFFKLPNL-KSI   81 (183)
Q Consensus         7 ~~l~~-l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~---~~~~~~~~~~~~~l~~~~lg~lp~l-~~l   81 (183)
                      ++|++ |++.+|++++|+||||||||||+++|+|+.+|++|.|.+.|+   ++................++++++. ...
T Consensus       146 ~vld~vl~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~~~  225 (438)
T 2dpy_A          146 RAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSP  225 (438)
T ss_dssp             HHHHHHSCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTTSCH
T ss_pred             eEEeeeEEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccccccCceEEEEECCCCCH
Confidence            46665 578999999999999999999999999999999999999997   3332100000000000112232221 111


Q ss_pred             ccccc-chHHHHHHHHcCC-----CCccCCCCCCCChhhhh-ee-cCchhhcccccccCcccccccccceeecCc---cc
Q 036195           82 CHEAL-AFPCLERIYVHGC-----PSLRKLPFSLESGKRNG-VL-IGEEEWWNQLEWDDEATKHVFSSKLIITTP---QT  150 (183)
Q Consensus        82 ~~~~~-~~~~l~vLe~l~L-----~~L~~~~~~~LSgGqk~-~i-~~~~~w~~~l~~~d~~~~~~~~~~~~~~~~---~~  150 (183)
                      +.+.. ........+.+.-     ..+.+ .+..+|+||++ .+ .++|..   .+.-|+..+..+..++.....   +.
T Consensus       226 ~~~~~v~~~~~~~ae~~~~~~~~v~~~ld-~l~~lS~g~qrvslAl~~p~~---t~glD~~~~~~l~~ll~r~~~~~~~~  301 (438)
T 2dpy_A          226 LLRMQGAAYATRIAEDFRDRGQHVLLIMD-SLTRYAMAQREIALAIGEPPA---TKGYPPSVFAKLPALVERAGNGIHGG  301 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTCEEEEEEE-CHHHHHHHHHHHHHHTTCCCC---SSSCCTTHHHHHHHHHTTCSCCSTTS
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCHHHHHH-hHHHHHHHHHHHHHHhCCCcc---cccCCHHHHHHHHHHHHHHHhccCCC
Confidence            11000 0011111121110     11122 25668999966 33 555554   677788888888887776655   22


Q ss_pred             c-----cCCCCCCceeeeeecccceEEEE
Q 036195          151 V-----ISIPQPSYTYEATIRPRYELICI  174 (183)
Q Consensus       151 ~-----~~~~~~~~~~~~~~~~~~~~~~~  174 (183)
                      .     .++++++||+.  ...+|+++.|
T Consensus       302 GsiT~~~tVlv~tHdl~--~~iad~v~~l  328 (438)
T 2dpy_A          302 GSITAFYTVLTEGDDQQ--DPIADSARAI  328 (438)
T ss_dssp             CEEEEEEEEECSSSCSC--CHHHHHHHHH
T ss_pred             CcccceeEEEEeCCCcc--chhhceEEEE
Confidence            3     38999999997  5666766554

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=99.56  E-value=2.6e-17  Score=123.06  Aligned_cols=140  Identities=9%  Similarity=-0.087  Sum_probs=84.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccccccchHHHHHHHHcC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHEALAFPCLERIYVHG   98 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~~~~~~~l~vLe~l~   98 (183)
                      .++|+||||||||||+++|+|++.     |.+.|.+.+....    + .....+++.++........        +..++
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~----~-~~~~~ig~~~~~~~~~~~~--------~~~~~   63 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRD----P-ETKKRTGFRIITTEGKKKI--------FSSKF   63 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC-----------CCEEEEEETTCCEEE--------EEETT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhcc----c-cccceeEEEeecCcHHHHH--------HHhhc
Confidence            689999999999999999999985     4555543321100    0 0001122222111000000        00001


Q ss_pred             C--CCccCCCCCCCChhhhhe-----------ecCchhhc---c--cccccCcccccccccceeecCcccccCCCCCC--
Q 036195           99 C--PSLRKLPFSLESGKRNGV-----------LIGEEEWW---N--QLEWDDEATKHVFSSKLIITTPQTVISIPQPS--  158 (183)
Q Consensus        99 L--~~L~~~~~~~LSgGqk~~-----------i~~~~~w~---~--~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--  158 (183)
                      .  ....+.++.+||+||+|+           +..+|+.+   |  |.+..|+..+..+...+..    ...++++++  
T Consensus        64 ~~~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~----~~~~~i~~~H~  139 (178)
T 1ye8_A           64 FTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD----PNVNVVATIPI  139 (178)
T ss_dssp             CCCSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC----TTSEEEEECCS
T ss_pred             CCccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc----CCCeEEEEEcc
Confidence            1  135677788999999872           34567775   6  8999998888887777654    233355555  


Q ss_pred             -ceeeeeecccce--EEEEeeCCCC
Q 036195          159 -YTYEATIRPRYE--LICIDVDDTG  180 (183)
Q Consensus       159 -~~~~~~~~~~~~--~~~~~~~~~~  180 (183)
                       ||.+++.+.|++  .-+++++...
T Consensus       140 ~h~~~~~~~i~~r~~~~i~~~~~~~  164 (178)
T 1ye8_A          140 RDVHPLVKEIRRLPGAVLIELTPEN  164 (178)
T ss_dssp             SCCSHHHHHHHTCTTCEEEECCTTT
T ss_pred             CCCchHHHHHHhcCCcEEEEecCcC
Confidence             699999888888  5566766543

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=99.54  E-value=2.4e-17  Score=132.87  Aligned_cols=142  Identities=10%  Similarity=-0.061  Sum_probs=81.7

Q ss_pred             cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchhee-ehhhhccCCCCcc-ccccccch
Q 036195           11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILI-RRAYFFKLPNLKS-ICHEALAF   88 (183)
Q Consensus        11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l-~~~~lg~lp~l~~-l~~~~~~~   88 (183)
                      +|++++|++++|+||||||||||++.|+|+++|++|+|.+.|.++...........+ ....++++++... .+.....+
T Consensus        94 ~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~  173 (302)
T 3b9q_A           94 QLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLS  173 (302)
T ss_dssp             CCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHH
T ss_pred             ccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHH
Confidence            456789999999999999999999999999999999999999876431000000011 1123444443322 21111111


Q ss_pred             HHHH----------HHHHcCCCCccCCCCCCCChhhhhe----ecCchh--hc--ccccccCcccccccccceeecCccc
Q 036195           89 PCLE----------RIYVHGCPSLRKLPFSLESGKRNGV----LIGEEE--WW--NQLEWDDEATKHVFSSKLIITTPQT  150 (183)
Q Consensus        89 ~~l~----------vLe~l~L~~L~~~~~~~LSgGqk~~----i~~~~~--w~--~~l~~~d~~~~~~~~~~~~~~~~~~  150 (183)
                      +...          +++.+++....+.++.+|| -|+..    +..+|+  ++  |+....|+..+.      ..+..+.
T Consensus       174 e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLS-kqr~~iaral~~~P~e~lLvLDptsglD~~~~~------~~~~~~~  246 (302)
T 3b9q_A          174 KAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI-ACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQA------REFNEVV  246 (302)
T ss_dssp             HHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHH-HHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHHH------HHHHHHT
T ss_pred             HHHHHHHHcCCcchHHhcCCCCcchhHHHHHHH-HHHHHHHHhhccCCCeeEEEEeCCCCcCHHHHH------HHHHHhc
Confidence            1111          1222334444445556778 23322    356777  64  888777765432      1122234


Q ss_pred             ccCCCCCCc
Q 036195          151 VISIPQPSY  159 (183)
Q Consensus       151 ~~~~~~~~~  159 (183)
                      ..+++++||
T Consensus       247 g~t~iiiTh  255 (302)
T 3b9q_A          247 GITGLILTK  255 (302)
T ss_dssp             CCCEEEEEC
T ss_pred             CCCEEEEeC
Confidence            677888899

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=99.53  E-value=1.2e-15  Score=111.87  Aligned_cols=45  Identities=18%  Similarity=0.201  Sum_probs=42.2

Q ss_pred             cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcc
Q 036195           11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ   56 (183)
Q Consensus        11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~   56 (183)
                      ||++++|++++|+||||||||||+|+|+|++ |++|+|.+.|.++.
T Consensus        27 sl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~   71 (158)
T 1htw_A           27 KLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLV   71 (158)
T ss_dssp             HHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCE
T ss_pred             ccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeee
Confidence            5678999999999999999999999999999 99999999988764

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=99.53  E-value=6.2e-16  Score=127.60  Aligned_cols=70  Identities=16%  Similarity=0.010  Sum_probs=59.9

Q ss_pred             CCCCCCCChhhhheec------------Cchhhc---ccccccCcccccccccceeecCcccccCCCCCCceeeeeeccc
Q 036195          104 KLPFSLESGKRNGVLI------------GEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPR  168 (183)
Q Consensus       104 ~~~~~~LSgGqk~~i~------------~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (183)
                      ++++.+|||||+|++.            .+|+.+   ||....|+..+..+..++..+..+ ..+|+++|||++. ++.+
T Consensus       274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~-g~tvi~itH~~~~-~~~~  351 (365)
T 3qf7_A          274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERL-NKVIVFITHDREF-SEAF  351 (365)
T ss_dssp             EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGS-SSEEEEEESCHHH-HTTC
T ss_pred             CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEecchHH-HHhC
Confidence            4678899999998432            577776   899999999999999999888655 8899999999998 7889


Q ss_pred             ceEEEEe
Q 036195          169 YELICID  175 (183)
Q Consensus       169 ~~~~~~~  175 (183)
                      |++++++
T Consensus       352 d~~~~l~  358 (365)
T 3qf7_A          352 DRKLRIT  358 (365)
T ss_dssp             SCEEEEE
T ss_pred             CEEEEEE
Confidence            9999986

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.51  E-value=9.6e-16  Score=131.88  Aligned_cols=141  Identities=9%  Similarity=-0.072  Sum_probs=103.5

Q ss_pred             eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcE--EEEEecCccccccccchheeehhhhccCCCCccccccccchHH
Q 036195           13 EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHK--FAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHEALAFPC   90 (183)
Q Consensus        13 ~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~--I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~~~~~~~   90 (183)
                      .+.+|++++|+||||||||||++.++|+..|. |.  +++..++....     +  ..  ....   .. +       ..
T Consensus       277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~~vi~~~~ee~~~~-----l--~~--~~~~---~g-~-------~~  335 (525)
T 1tf7_A          277 GFFKDSIILATGATGTGKTLLVSRFVENACAN-KERAILFAYEESRAQ-----L--LR--NAYS---WG-M-------DF  335 (525)
T ss_dssp             SEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TCCEEEEESSSCHHH-----H--HH--HHHT---TS-C-------CH
T ss_pred             CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CCCEEEEEEeCCHHH-----H--HH--HHHH---cC-C-------CH
Confidence            78999999999999999999999999999885 54  46655543210     0  00  0000   00 0       01


Q ss_pred             HHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc--ccccccCcc-----cccccccceeecCcccccCCCCC
Q 036195           91 LERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW--NQLEWDDEA-----TKHVFSSKLIITTPQTVISIPQP  157 (183)
Q Consensus        91 l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~--~~l~~~d~~-----~~~~~~~~~~~~~~~~~~~~~~~  157 (183)
                      .+ +...++..+.+.++.+||+||+++      +..+|+.+  |+++.-|..     .+..+..++..++.+ .++++++
T Consensus       336 ~~-~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilDp~~~Ld~~~~~~~~~~~i~~ll~~l~~~-g~tvilv  413 (525)
T 1tf7_A          336 EE-MERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQE-EITGLFT  413 (525)
T ss_dssp             HH-HHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHT-TCEEEEE
T ss_pred             HH-HHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEcChHHHHhhCChHHHHHHHHHHHHHHHhC-CCEEEEE
Confidence            12 334566677888899999999882      25667764  999999988     888888888877654 8999999


Q ss_pred             Ccee----------eeeecccceEEEEee
Q 036195          158 SYTY----------EATIRPRYELICIDV  176 (183)
Q Consensus       158 ~~~~----------~~~~~~~~~~~~~~~  176 (183)
                      +|+.          +.+...||+|+.++-
T Consensus       414 sh~~~~~~~~~~~~~~l~~~~D~vi~L~~  442 (525)
T 1tf7_A          414 NTSDQFMGAHSITDSHISTITDTIILLQY  442 (525)
T ss_dssp             EECSSSSCCCSSCSSCCTTTCSEEEEEEE
T ss_pred             ECcccccCcccccCcccceeeeEEEEEEE
Confidence            9999          778889999998864

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.51  E-value=4.2e-15  Score=120.55  Aligned_cols=75  Identities=13%  Similarity=0.065  Sum_probs=57.0

Q ss_pred             CccCCCCCCCChhhhhe--e----c----Cchhhc---ccccccCcccccccccceeecCcccccCCCCCCceeeeeecc
Q 036195          101 SLRKLPFSLESGKRNGV--L----I----GEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRP  167 (183)
Q Consensus       101 ~L~~~~~~~LSgGqk~~--i----~----~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (183)
                      ...+.++..||+||+|+  |    +    .+|..+   ||....|+..+..+..++..+. + ..+++++||+. .++..
T Consensus       211 ~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~-~~~vi~~tH~~-~~~~~  287 (322)
T 1e69_A          211 GRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-K-HTQFIVITHNK-IVMEA  287 (322)
T ss_dssp             TSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-T-TSEEEEECCCT-TGGGG
T ss_pred             ccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CCeEEEEECCH-HHHhh
Confidence            34566788999999982  2    2    355654   8899999999999988887764 2 57899999995 57889


Q ss_pred             cceEEEEeeCC
Q 036195          168 RYELICIDVDD  178 (183)
Q Consensus       168 ~~~~~~~~~~~  178 (183)
                      ||++..+-+.+
T Consensus       288 ~d~~~~v~~~~  298 (322)
T 1e69_A          288 ADLLHGVTMVN  298 (322)
T ss_dssp             CSEEEEEEESS
T ss_pred             CceEEEEEEeC
Confidence            99986555554

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=99.49  E-value=1.4e-14  Score=117.09  Aligned_cols=97  Identities=14%  Similarity=0.062  Sum_probs=59.1

Q ss_pred             ecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcE--EEEEecCccccccccchheeehhhhccCCCCccccccccchHHH
Q 036195           14 DDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHK--FAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHEALAFPCL   91 (183)
Q Consensus        14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~--I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~~~~~~~l   91 (183)
                      +++|+++||+||||||||||+++|+|+++|+.|.  |.+-.++..    ....+..+..  .... ..............
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~----~~~~t~~e~~--~~~~-~~g~~~~~d~~~~~  159 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGF----LYPNAELQRR--NLMH-RKGFPESYNRRALM  159 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGG----BCCHHHHHHT--TCTT-CTTSGGGBCHHHHH
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCcc----CCcccHHHHH--HHHH-hcCCChHHHHHHHH
Confidence            7899999999999999999999999999998773  333222211    0011111111  1111 01111111223456


Q ss_pred             HHHHHcCCCCccCCCCCCCChhhhhee
Q 036195           92 ERIYVHGCPSLRKLPFSLESGKRNGVL  118 (183)
Q Consensus        92 ~vLe~l~L~~L~~~~~~~LSgGqk~~i  118 (183)
                      +.++.++ ....+.++..||+||++++
T Consensus       160 ~~L~~l~-~~~~~~~~~~lS~G~~qRv  185 (312)
T 3aez_A          160 RFVTSVK-SGSDYACAPVYSHLHYDII  185 (312)
T ss_dssp             HHHHHHH-TTCSCEEEEEEETTTTEEE
T ss_pred             HHHHHhC-CCcccCCcccCChhhhhhh
Confidence            6777776 4455567789999999843

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=99.48  E-value=1.8e-16  Score=130.38  Aligned_cols=142  Identities=10%  Similarity=-0.061  Sum_probs=82.2

Q ss_pred             cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchhee-ehhhhccCCCCcc-ccccccch
Q 036195           11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILI-RRAYFFKLPNLKS-ICHEALAF   88 (183)
Q Consensus        11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l-~~~~lg~lp~l~~-l~~~~~~~   88 (183)
                      +|++++|++++|+||||||||||++.|+|+++|++|+|.+.|.++...........+ ....++++++... .+.....+
T Consensus       151 ~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~  230 (359)
T 2og2_A          151 QLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLS  230 (359)
T ss_dssp             CCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHH
T ss_pred             ceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHH
Confidence            456789999999999999999999999999999999999999876431000000011 1123344443322 11111111


Q ss_pred             HHHH----------HHHHcCCCCccCCCCCCCChhhhhe----ecCchh--hc--ccccccCcccccccccceeecCccc
Q 036195           89 PCLE----------RIYVHGCPSLRKLPFSLESGKRNGV----LIGEEE--WW--NQLEWDDEATKHVFSSKLIITTPQT  150 (183)
Q Consensus        89 ~~l~----------vLe~l~L~~L~~~~~~~LSgGqk~~----i~~~~~--w~--~~l~~~d~~~~~~~~~~~~~~~~~~  150 (183)
                      +...          +++.+++....+.++.+|| -|+..    +..+|+  ++  |+....|+..+.      ..+..+.
T Consensus       231 e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLS-kqr~~iaral~~~P~e~lLvLDpttglD~~~~~------~~~~~~~  303 (359)
T 2og2_A          231 KAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI-ACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQA------REFNEVV  303 (359)
T ss_dssp             HHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHH-HHHHHHHHHSTTCCSEEEEEEEGGGGGGGHHHH------HHHHHHT
T ss_pred             HHHHHHHhCCCHHHHHHhcCCChhhhhHHHHHH-HHHHHHHHHHhcCCCceEEEEcCCCCCCHHHHH------HHHHHhc
Confidence            1111          1222344444445566778 23322    356777  64  888777765432      1122234


Q ss_pred             ccCCCCCCc
Q 036195          151 VISIPQPSY  159 (183)
Q Consensus       151 ~~~~~~~~~  159 (183)
                      ..+++++||
T Consensus       304 g~t~iiiTh  312 (359)
T 2og2_A          304 GITGLILTK  312 (359)
T ss_dssp             CCCEEEEES
T ss_pred             CCeEEEEec
Confidence            677888899

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.46  E-value=8.3e-16  Score=122.01  Aligned_cols=38  Identities=24%  Similarity=0.164  Sum_probs=24.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcc
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ   56 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~   56 (183)
                      .++|+||||||||||+|+|+|+..|++|+|.++|.++.
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~   41 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIP   41 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHC------------CC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccC
Confidence            58999999999999999999999999999999998664

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=99.39  E-value=5.7e-14  Score=110.86  Aligned_cols=51  Identities=20%  Similarity=0.206  Sum_probs=46.9

Q ss_pred             cccccccceecCccEEEEEcCCCCcHHHHHHHHhcCCCCC-CcEEEEEecCc
Q 036195            5 YRPHLRYIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDM-SHKFAIYAVSL   55 (183)
Q Consensus         5 ~~~~l~~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~-~G~I~~~g~~~   55 (183)
                      +.++|+++++++|++++|+||||||||||+++|+|+++|+ +|+|.+.|.++
T Consensus        13 ~~~vl~~i~i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i   64 (261)
T 2eyu_A           13 LPDKVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPI   64 (261)
T ss_dssp             CCTHHHHGGGCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSC
T ss_pred             CHHHHHHHhhCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcc
Confidence            3468888889999999999999999999999999999998 99999999765

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=99.35  E-value=6.5e-15  Score=112.74  Aligned_cols=42  Identities=21%  Similarity=0.182  Sum_probs=35.6

Q ss_pred             eecCccEEEEEcCCCCcHHHHHHHHhcCCCC-------CCcEEEEEecC
Q 036195           13 EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSD-------MSHKFAIYAVS   54 (183)
Q Consensus        13 ~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p-------~~G~I~~~g~~   54 (183)
                      .+++|++++|+||||||||||+++|+|+..|       ..|.+++++.+
T Consensus        21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~   69 (231)
T 4a74_A           21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN   69 (231)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence            3899999999999999999999999996655       44577887765

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=99.32  E-value=3.2e-14  Score=113.64  Aligned_cols=162  Identities=12%  Similarity=-0.006  Sum_probs=90.1

Q ss_pred             cccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCc-EEEEEecCccccccccchheeehhhhccCCCCc-ccc
Q 036195            7 PHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSH-KFAIYAVSLQKKISVCSFILIRRAYFFKLPNLK-SIC   82 (183)
Q Consensus         7 ~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G-~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~-~l~   82 (183)
                      ++|+++  .+.+|++++|+||||||||||++.|+|...|++| .|.+.+.+....       .+............ ..+
T Consensus        23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~-------~~~~r~~~~~~~~~~~~~   95 (296)
T 1cr0_A           23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVE-------ETAEDLIGLHNRVRLRQS   95 (296)
T ss_dssp             TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHH-------HHHHHHHHHHTTCCGGGC
T ss_pred             HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHH-------HHHHHHHHHHcCCChhhc
Confidence            456644  5899999999999999999999999999999988 786655443211       00000000000000 000


Q ss_pred             c-----cccchHH----HHHHHHcCCCCccCCCCCCCChhhhh-e-----ecCchhhc--ccccc-------cCc-cccc
Q 036195           83 H-----EALAFPC----LERIYVHGCPSLRKLPFSLESGKRNG-V-----LIGEEEWW--NQLEW-------DDE-ATKH  137 (183)
Q Consensus        83 ~-----~~~~~~~----l~vLe~l~L~~L~~~~~~~LSgGqk~-~-----i~~~~~w~--~~l~~-------~d~-~~~~  137 (183)
                      .     .......    .++++...+. +.+ .+..+|.++.+ +     +..+|+.+  |.+.-       .|. ....
T Consensus        96 ~~l~~~~~~~~~~~~~~~~~l~~~~l~-i~~-~~~~~~~~~l~~~~~a~~~~~~p~llilDept~~~~~~~~~d~~~~~~  173 (296)
T 1cr0_A           96 DSLKREIIENGKFDQWFDELFGNDTFH-LYD-SFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMID  173 (296)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHSSSCEE-EEC-CCCSCCHHHHHHHHHHHHHTTCCSEEEEEEEC-----------CHHHH
T ss_pred             cccccCCCCHHHHHHHHHHHhccCCEE-EEC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCCCCCCCHHHHHH
Confidence            0     0000011    1122211211 222 23567787743 2     34566664  54443       232 3334


Q ss_pred             ccccceeecCcccccCCCCCCcee--e--------------------eeecccceEEEEeeC
Q 036195          138 VFSSKLIITTPQTVISIPQPSYTY--E--------------------ATIRPRYELICIDVD  177 (183)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~--~--------------------~~~~~~~~~~~~~~~  177 (183)
                      .+...+..+..+..+.|+++||+.  +                    .+...||+|+.|+-.
T Consensus       174 ~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~  235 (296)
T 1cr0_A          174 NLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERN  235 (296)
T ss_dssp             HHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC
T ss_pred             HHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecC
Confidence            455556666667789999999996  4                    556789999999743

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=99.32  E-value=2.7e-13  Score=115.19  Aligned_cols=50  Identities=16%  Similarity=0.084  Sum_probs=44.5

Q ss_pred             ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcc
Q 036195            6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ   56 (183)
Q Consensus         6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~   56 (183)
                      .++|+  +|++++ |+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus        17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~   68 (483)
T 3euj_A           17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEA   68 (483)
T ss_dssp             ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSC
T ss_pred             cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcc
Confidence            34565  456889 999999999999999999999999999999999998765

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=99.30  E-value=9.2e-13  Score=108.17  Aligned_cols=93  Identities=15%  Similarity=0.119  Sum_probs=56.1

Q ss_pred             ecCccEEEEEcCCCCcHHHHHHHHhcCCC-CCCcEEEEE-ecCccccccccchheeehhhhccCCCCccccc--------
Q 036195           14 DDGVKIIGLYGVRGVGKSTLIKQLNDMFS-DMSHKFAIY-AVSLQKKISVCSFILIRRAYFFKLPNLKSICH--------   83 (183)
Q Consensus        14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~~-p~~G~I~~~-g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~--------   83 (183)
                      ..+|++++|+||||||||||+++|+|+.. |++|+|.+. |.......         ...++++++...++.        
T Consensus       212 ~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~---------~~~i~~v~q~~~l~dtpgv~e~~  282 (358)
T 2rcn_A          212 ALTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTT---------AARLYHFPHGGDVIDSPGVREFG  282 (358)
T ss_dssp             HHTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------C---------CCEEEECTTSCEEEECHHHHTCC
T ss_pred             hcCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceE---------EEEEEEECCCCEecCcccHHHhh
Confidence            45899999999999999999999999999 999999986 54321100         011122222111110        


Q ss_pred             --ccc----chHHHHHHHHcCCCCccCCCCCCCChhhhh
Q 036195           84 --EAL----AFPCLERIYVHGCPSLRKLPFSLESGKRNG  116 (183)
Q Consensus        84 --~~~----~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~  116 (183)
                        ...    .....++++.+++..+.+.+..++| ||++
T Consensus       283 l~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~  320 (358)
T 2rcn_A          283 LWHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAI  320 (358)
T ss_dssp             CCCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHH
T ss_pred             hcCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHH
Confidence              000    1112456778888899999999999 8877

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=99.29  E-value=3.6e-13  Score=102.91  Aligned_cols=159  Identities=9%  Similarity=-0.120  Sum_probs=87.7

Q ss_pred             ccccc---eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195            8 HLRYI---EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE   84 (183)
Q Consensus         8 ~l~~l---~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~   84 (183)
                      .|+.+   .+.+|++++|+||||||||||++.+++...+.+|.|.+.+.+.....    ... ....++..++.......
T Consensus        11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~   85 (235)
T 2w0m_A           11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDS----IIR-QAKQFNWDFEEYIEKKL   85 (235)
T ss_dssp             HHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHH----HHH-HHHHTTCCCGGGBTTTE
T ss_pred             HHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHH----HHH-HHHHhcchHHHHhhCCE
Confidence            45544   38899999999999999999999999998888899988776543210    000 00011111110000000


Q ss_pred             ccchHHHHHHHHcCCCCccCCCCCCCChhhhh-ee-----cCchh--hc--cccc---ccCcccccccccceeecCcccc
Q 036195           85 ALAFPCLERIYVHGCPSLRKLPFSLESGKRNG-VL-----IGEEE--WW--NQLE---WDDEATKHVFSSKLIITTPQTV  151 (183)
Q Consensus        85 ~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~-~i-----~~~~~--w~--~~l~---~~d~~~~~~~~~~~~~~~~~~~  151 (183)
                      ..........   + ...   .....|.++.+ .+     ..+|+  .+  |.+.   ..|+.....+...+..+..+..
T Consensus        86 ~~~~~~~~~~---~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~  158 (235)
T 2w0m_A           86 IIIDALMKEK---E-DQW---SLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWN  158 (235)
T ss_dssp             EEEECCC--------CTT---BCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTT
T ss_pred             EEEecccccc---C-cee---eecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCC
Confidence            0000000000   0 000   11233666654 21     23566  43  4433   3366555556556665555668


Q ss_pred             cCCCCCCcee--------eeeecccceEEEEeeCC
Q 036195          152 ISIPQPSYTY--------EATIRPRYELICIDVDD  178 (183)
Q Consensus       152 ~~~~~~~~~~--------~~~~~~~~~~~~~~~~~  178 (183)
                      +.+++++|+.        ..+...||+|+.++-+.
T Consensus       159 ~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~  193 (235)
T 2w0m_A          159 FTIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI  193 (235)
T ss_dssp             EEEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred             CeEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence            8999999999        45778899999998653

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=99.28  E-value=4e-13  Score=104.69  Aligned_cols=37  Identities=19%  Similarity=0.259  Sum_probs=26.1

Q ss_pred             ccccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195            5 YRPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus         5 ~~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .+++|++  |++++|+++||+||||||||||+++|+|++
T Consensus        11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l   49 (245)
T 2jeo_A           11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL   49 (245)
T ss_dssp             ------------CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            4567875  568999999999999999999999999976

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=99.28  E-value=5.4e-14  Score=106.78  Aligned_cols=142  Identities=16%  Similarity=0.041  Sum_probs=75.7

Q ss_pred             ecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccccccchHHHHH
Q 036195           14 DDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHEALAFPCLER   93 (183)
Q Consensus        14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~~~~~~~l~v   93 (183)
                      .++|+++||+||||||||||+++|+|++.|   .+.+-.++..-... ...+......+.+     ............++
T Consensus         3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---~i~~v~~d~~~~~~-~~~~~~~~~~~~~-----~~~~~~~~~~~~~~   73 (211)
T 3asz_A            3 APKPFVIGIAGGTASGKTTLAQALARTLGE---RVALLPMDHYYKDL-GHLPLEERLRVNY-----DHPDAFDLALYLEH   73 (211)
T ss_dssp             --CCEEEEEEESTTSSHHHHHHHHHHHHGG---GEEEEEGGGCBCCC-TTSCHHHHHHSCT-----TSGGGBCHHHHHHH
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---CeEEEecCccccCc-ccccHHHhcCCCC-----CChhhhhHHHHHHH
Confidence            578999999999999999999999999876   34443332110000 0001101111100     00111112235567


Q ss_pred             HHHcCCCCccCCCCCCCChhhhh----ee------cCchhh--c-ccccc-------cCcccccccccceeecCcccccC
Q 036195           94 IYVHGCPSLRKLPFSLESGKRNG----VL------IGEEEW--W-NQLEW-------DDEATKHVFSSKLIITTPQTVIS  153 (183)
Q Consensus        94 Le~l~L~~L~~~~~~~LSgGqk~----~i------~~~~~w--~-~~l~~-------~d~~~~~~~~~~~~~~~~~~~~~  153 (183)
                      ++.+++.+..+.|...+|+|+++    ++      ..++..  + +++..       .|......+...+.....+...+
T Consensus        74 l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t  153 (211)
T 3asz_A           74 AQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRS  153 (211)
T ss_dssp             HHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCC
Confidence            77777777777788999999752    22      222222  1 23332       45544455555444322223567


Q ss_pred             CCCCCceeeee
Q 036195          154 IPQPSYTYEAT  164 (183)
Q Consensus       154 ~~~~~~~~~~~  164 (183)
                      +.+++|++...
T Consensus       154 ~~~~~~~~~~~  164 (211)
T 3asz_A          154 LEGVVAQYLEQ  164 (211)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            77788886544

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=99.25  E-value=1.3e-12  Score=106.36  Aligned_cols=47  Identities=19%  Similarity=0.145  Sum_probs=42.4

Q ss_pred             cccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecC
Q 036195            8 HLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVS   54 (183)
Q Consensus         8 ~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~   54 (183)
                      ++++  +.+++|++++|+||||||||||+++|+|+++|++|.|.++|.+
T Consensus       160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~  208 (330)
T 2pt7_A          160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE  208 (330)
T ss_dssp             HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC
T ss_pred             HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee
Confidence            4554  4589999999999999999999999999999999999999864

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.23  E-value=1.9e-12  Score=104.12  Aligned_cols=43  Identities=21%  Similarity=0.105  Sum_probs=34.1

Q ss_pred             eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEE---EecCcc
Q 036195           13 EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAI---YAVSLQ   56 (183)
Q Consensus        13 ~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~---~g~~~~   56 (183)
                      ++.+|++++|+||||||||||+|+|+ +.+|++|+|.+   +|++++
T Consensus       161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t  206 (302)
T 2yv5_A          161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTT  206 (302)
T ss_dssp             HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CC
T ss_pred             hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCce
Confidence            35789999999999999999999999 99999999999   887654

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=99.22  E-value=4.3e-12  Score=102.17  Aligned_cols=42  Identities=26%  Similarity=0.441  Sum_probs=39.6

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccc
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQK   57 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~   57 (183)
                      +|++++|+||||||||||++.|+|+++|++|+|.+.|.++..
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r  142 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFR  142 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSS
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCC
Confidence            699999999999999999999999999999999999988653

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=99.22  E-value=3.6e-12  Score=103.93  Aligned_cols=75  Identities=15%  Similarity=0.128  Sum_probs=60.7

Q ss_pred             ccCCCCCCCChhhhhe------e------cCchhhc---ccccccCcccccccccceeecCcccccCCCCCCceeeeeec
Q 036195          102 LRKLPFSLESGKRNGV------L------IGEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIR  166 (183)
Q Consensus       102 L~~~~~~~LSgGqk~~------i------~~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (183)
                      ..++++.+|||||+|+      +      .++|..+   ||....|+..+..+..++..+..+ ..+++++|||. .++.
T Consensus       241 ~~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~-~~~vi~~sH~~-~~~~  318 (339)
T 3qkt_A          241 GKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQVILVSHDE-ELKD  318 (339)
T ss_dssp             TEEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGG-SSEEEEEESCG-GGGG
T ss_pred             cCcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEEChH-HHHH
Confidence            3467889999999872      2      3467775   889999999999998888776555 56899999995 5789


Q ss_pred             ccceEEEEeeCC
Q 036195          167 PRYELICIDVDD  178 (183)
Q Consensus       167 ~~~~~~~~~~~~  178 (183)
                      .||+++++++.+
T Consensus       319 ~~d~~~~l~~~~  330 (339)
T 3qkt_A          319 AADHVIRISLEN  330 (339)
T ss_dssp             GCSEEEEEEEET
T ss_pred             hCCEEEEEEecC
Confidence            999999999865

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=99.22  E-value=3.8e-12  Score=104.74  Aligned_cols=43  Identities=26%  Similarity=0.206  Sum_probs=40.4

Q ss_pred             cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEec
Q 036195           11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAV   53 (183)
Q Consensus        11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~   53 (183)
                      ++.+++|++++|+||||||||||+++|+|+++|++|.|.++|.
T Consensus       169 ~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~  211 (361)
T 2gza_A          169 RRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDV  211 (361)
T ss_dssp             HHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESS
T ss_pred             HHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCc
Confidence            4568999999999999999999999999999999999999974

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=99.21  E-value=7.4e-13  Score=104.96  Aligned_cols=137  Identities=12%  Similarity=-0.064  Sum_probs=81.0

Q ss_pred             eecCccEEEEEcCCCCcHHHHHHHHhcCCCCC----------CcEE-EEEecCccccccccchheeehhhhccCCCCccc
Q 036195           13 EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDM----------SHKF-AIYAVSLQKKISVCSFILIRRAYFFKLPNLKSI   81 (183)
Q Consensus        13 ~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~----------~G~I-~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l   81 (183)
                      .+.+|++++|+||||||||||++.+++....-          .|.+ ++..++...     .+. .....++        
T Consensus        26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~~-----~~~-~r~~~~g--------   91 (279)
T 1nlf_A           26 NMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPT-----AIH-HRLHALG--------   91 (279)
T ss_dssp             TEETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHH-----HHH-HHHHHHH--------
T ss_pred             CccCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCHH-----HHH-HHHHHHH--------
Confidence            37899999999999999999999999866431          2333 222221100     000 0000011        


Q ss_pred             cccccchHHHHHHHHcCCCCccCCCCCCCChhhhh---eecCchhhc--cccc---ccCcccc---cccccceeecCccc
Q 036195           82 CHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNG---VLIGEEEWW--NQLE---WDDEATK---HVFSSKLIITTPQT  150 (183)
Q Consensus        82 ~~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~---~i~~~~~w~--~~l~---~~d~~~~---~~~~~~~~~~~~~~  150 (183)
                       .........++++.+.+..+.+.++..+|+|+.+   .+..+++.+  |++.   ..|++..   ..+...+..+..+.
T Consensus        92 -~~~~~~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~  170 (279)
T 1nlf_A           92 -AHLSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGLKRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADT  170 (279)
T ss_dssp             -TTSCHHHHHHHHHHEEECCCTTSCCCTTSHHHHHHHHHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             -hhcChhhhhhccCceEEeecCCCCcccCCHHHHHHHHHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHc
Confidence             0111223455678888888888899999999876   234456664  4433   3455443   44444555554566


Q ss_pred             ccCCCCCCceeeee
Q 036195          151 VISIPQPSYTYEAT  164 (183)
Q Consensus       151 ~~~~~~~~~~~~~~  164 (183)
                      .+.|++++|+.+..
T Consensus       171 g~tvi~i~H~~~~~  184 (279)
T 1nlf_A          171 GCSIVFLHHASKGA  184 (279)
T ss_dssp             CCEEEEEEEC----
T ss_pred             CCEEEEEecCCCcc
Confidence            89999999998775

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=99.19  E-value=7.7e-12  Score=101.68  Aligned_cols=43  Identities=23%  Similarity=0.338  Sum_probs=40.5

Q ss_pred             cCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccc
Q 036195           15 DGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQK   57 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~   57 (183)
                      ++|++++|+||||||||||++.|+|+++|++|+|.+.|.++..
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r  169 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFR  169 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccc
Confidence            6899999999999999999999999999999999999988753

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=99.18  E-value=5.4e-12  Score=107.23  Aligned_cols=46  Identities=28%  Similarity=0.358  Sum_probs=42.1

Q ss_pred             cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcc
Q 036195           11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ   56 (183)
Q Consensus        11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~   56 (183)
                      +|++.+|++++|+||||||||||+++|+|+++|++|+|.+.+.+..
T Consensus       287 sl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~  332 (503)
T 2yhs_A          287 NVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTF  332 (503)
T ss_dssp             CCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTT
T ss_pred             eeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCccc
Confidence            4568999999999999999999999999999999999999877653

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=99.17  E-value=1.4e-11  Score=91.79  Aligned_cols=42  Identities=31%  Similarity=0.339  Sum_probs=37.5

Q ss_pred             eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcc
Q 036195           13 EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ   56 (183)
Q Consensus        13 ~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~   56 (183)
                      .+++|++++|+||||||||||+++|+|.  |..|.|.+++.++.
T Consensus         5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~   46 (191)
T 1zp6_A            5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLW   46 (191)
T ss_dssp             -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchh
Confidence            4789999999999999999999999998  78999999887653

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=99.16  E-value=8.9e-12  Score=95.84  Aligned_cols=43  Identities=16%  Similarity=0.037  Sum_probs=36.0

Q ss_pred             eecCccEEEEEcCCCCcHHHHHHHHhcCCCC--CCcEEEEEecCc
Q 036195           13 EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSD--MSHKFAIYAVSL   55 (183)
Q Consensus        13 ~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p--~~G~I~~~g~~~   55 (183)
                      ..++|++++|+||||||||||+++|+|+.+|  .+|.|.+.+++.
T Consensus        12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~   56 (219)
T 1s96_A           12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQP   56 (219)
T ss_dssp             ---CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCC
T ss_pred             cCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCC
Confidence            3689999999999999999999999999986  688888877643

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.16  E-value=1e-11  Score=101.30  Aligned_cols=51  Identities=31%  Similarity=0.448  Sum_probs=45.7

Q ss_pred             ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccc
Q 036195            7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQK   57 (183)
Q Consensus         7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~   57 (183)
                      .++++  +++.+|++++|+||||||||||+++|+|++.|++|+|.+.+.++..
T Consensus        43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~   95 (337)
T 2qm8_A           43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSS   95 (337)
T ss_dssp             HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred             HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcc
Confidence            46664  4589999999999999999999999999999999999999987754

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=99.16  E-value=2e-13  Score=123.93  Aligned_cols=129  Identities=10%  Similarity=-0.105  Sum_probs=75.5

Q ss_pred             cccccce--ecCccEEEEEcCCCCcHHHHHHHH--------hcCCCCCCcEEEEEecCccccccccchheeehhhhccCC
Q 036195            7 PHLRYIE--DDGVKIIGLYGVRGVGKSTLIKQL--------NDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLP   76 (183)
Q Consensus         7 ~~l~~l~--i~~Ge~~~liGpNGaGKSTLl~~i--------~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp   76 (183)
                      .|+++++  +++|++++|+|||||||||+||++        .|..-|..+.. +                      +.+.
T Consensus       650 ~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-~----------------------~~~d  706 (934)
T 3thx_A          650 FIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-V----------------------SIVD  706 (934)
T ss_dssp             CCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE-E----------------------ECCS
T ss_pred             eecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc-c----------------------hHHH
Confidence            4555554  678999999999999999999999        56555543221 0                      0000


Q ss_pred             CCccccccccchHHHHHHHHcCCCCccCCCCCCCChhhhh--ee---cCchhhc---ccccccCccccccc-ccceeecC
Q 036195           77 NLKSICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNG--VL---IGEEEWW---NQLEWDDEATKHVF-SSKLIITT  147 (183)
Q Consensus        77 ~l~~l~~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~--~i---~~~~~w~---~~l~~~d~~~~~~~-~~~~~~~~  147 (183)
                         .+            +..+++.+......+.+|+++++  .+   +.+|..+   |+...-|+.....+ ..++..+.
T Consensus       707 ---~i------------~~~ig~~d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~  771 (934)
T 3thx_A          707 ---CI------------LARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIA  771 (934)
T ss_dssp             ---EE------------EEECC---------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHH
T ss_pred             ---HH------------HHhcCchhhHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence               00            11112222222333444455554  22   5677775   77888887655555 55556555


Q ss_pred             cccccCCCCCCceeeeeecccceEEEE
Q 036195          148 PQTVISIPQPSYTYEATIRPRYELICI  174 (183)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (183)
                      .+..+.++++||+.+. ...+|+++.+
T Consensus       772 ~~~g~~vl~aTH~~el-~~lad~~~~v  797 (934)
T 3thx_A          772 TKIGAFCMFATHFHEL-TALANQIPTV  797 (934)
T ss_dssp             HTTCCEEEEEESCGGG-GGGGGTCTTE
T ss_pred             hcCCCEEEEEcCcHHH-HHHhccccee
Confidence            5457899999999554 4678876543

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=99.15  E-value=1.8e-11  Score=92.12  Aligned_cols=41  Identities=15%  Similarity=0.213  Sum_probs=31.6

Q ss_pred             cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCc
Q 036195           11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSL   55 (183)
Q Consensus        11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~   55 (183)
                      |+++.+|++++|+||||||||||+++|+|++ |   .+.+.+...
T Consensus         1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~-~---~~~~~~~~~   41 (205)
T 3tr0_A            1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL-A---EIKISISHT   41 (205)
T ss_dssp             ----CCCCEEEEECCTTSCHHHHHHHHHHHS-S---SEEECCCEE
T ss_pred             CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC-C---CeEEeceec
Confidence            5678899999999999999999999999996 4   466665443

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=99.15  E-value=9.6e-12  Score=95.79  Aligned_cols=31  Identities=23%  Similarity=0.168  Sum_probs=22.4

Q ss_pred             cceecCccEEEEEcCCCCcHHHHHHHHh-cCC
Q 036195           11 YIEDDGVKIIGLYGVRGVGKSTLIKQLN-DMF   41 (183)
Q Consensus        11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~-gl~   41 (183)
                      ||++++|++++|+||||||||||+++|+ |++
T Consensus        21 sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           21 SMLKSVGVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             -CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred             CcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            6779999999999999999999999999 998

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=99.15  E-value=5.9e-12  Score=101.41  Aligned_cols=40  Identities=25%  Similarity=0.267  Sum_probs=37.3

Q ss_pred             cCccEEEEEcCCCCcHHHHHHHHhcCCC--CCCcEEEE---EecC
Q 036195           15 DGVKIIGLYGVRGVGKSTLIKQLNDMFS--DMSHKFAI---YAVS   54 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~~--p~~G~I~~---~g~~   54 (183)
                      .+|+++||+||||||||||+++|+|++.  |++|+|.+   +|..
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~  122 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL  122 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCcc
Confidence            8999999999999999999999999988  99999999   6654

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.14  E-value=1.5e-11  Score=98.72  Aligned_cols=45  Identities=24%  Similarity=0.217  Sum_probs=32.0

Q ss_pred             eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEE---EecCccc
Q 036195           13 EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAI---YAVSLQK   57 (183)
Q Consensus        13 ~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~---~g~~~~~   57 (183)
                      ++.+|++++|+||||||||||+|+|+|+.+|++|+|.+   +|++++.
T Consensus       165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~  212 (301)
T 1u0l_A          165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTT  212 (301)
T ss_dssp             HHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCC
T ss_pred             HHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCcee
Confidence            46789999999999999999999999999999999999   8877653

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=99.13  E-value=5.6e-13  Score=116.55  Aligned_cols=137  Identities=12%  Similarity=-0.063  Sum_probs=67.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCCC-CCcEEEEEecCccccccccchheeehhhhccCCCCccccccccchH-HHHHHHHc
Q 036195           20 IGLYGVRGVGKSTLIKQLNDMFSD-MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHEALAFP-CLERIYVH   97 (183)
Q Consensus        20 ~~liGpNGaGKSTLl~~i~gl~~p-~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~~~~~~-~l~vLe~l   97 (183)
                      +||+||||||||||+++|+|+..| ++|.|+++|.++...... .... ....++++++...++......+ .......+
T Consensus        48 iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~-~~~~-~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~  125 (608)
T 3szr_A           48 IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLV-NEDK-WRGKVSYQDYEIEISDASEVEKEINKAQNAI  125 (608)
T ss_dssp             EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECS-SSSC-CEEEESCC---CCCCCHHHHHTTHHHHHHHH
T ss_pred             EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCC-cccc-ceeEEeeecccccCCCHHHHHHHHHHHHHHh
Confidence            999999999999999999999989 799999999875321100 0001 1123444444332222111111 11111111


Q ss_pred             CCCCccCCCCCCCChhhhh-ee--cCchhhc---cc------ccccCcccccccccceee-cCcccccCCCCCCceeeee
Q 036195           98 GCPSLRKLPFSLESGKRNG-VL--IGEEEWW---NQ------LEWDDEATKHVFSSKLII-TTPQTVISIPQPSYTYEAT  164 (183)
Q Consensus        98 ~L~~L~~~~~~~LSgGqk~-~i--~~~~~w~---~~------l~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  164 (183)
                      +...      ...|.-... .+  ...|++.   +|      ....|+..+..+..++.. +.....+.+.+++||+..+
T Consensus       126 ~~~~------~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a  199 (608)
T 3szr_A          126 AGEG------MGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIA  199 (608)
T ss_dssp             HCSS------SCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTT
T ss_pred             cCCc------cccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhc
Confidence            1110      111110000 11  2234443   44      677788777777777766 4455567777889998754

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=99.13  E-value=6.9e-13  Score=102.63  Aligned_cols=45  Identities=18%  Similarity=0.137  Sum_probs=34.6

Q ss_pred             cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcc
Q 036195           11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ   56 (183)
Q Consensus        11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~   56 (183)
                      ++++.+ ++++|+||||||||||+++|+|++.|++|.|.++|.++.
T Consensus        22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~   66 (227)
T 1qhl_A           22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEA   66 (227)
T ss_dssp             EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC--------
T ss_pred             EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcc
Confidence            566776 899999999999999999999999999999999998763

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=99.09  E-value=1.5e-11  Score=101.55  Aligned_cols=49  Identities=20%  Similarity=0.220  Sum_probs=43.3

Q ss_pred             cccccceecCccEEEEEcCCCCcHHHHHHHHhcCCCCC-CcEEEEEecCc
Q 036195            7 PHLRYIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDM-SHKFAIYAVSL   55 (183)
Q Consensus         7 ~~l~~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~-~G~I~~~g~~~   55 (183)
                      ++|+++.+++|++++|+||||||||||+++|+|+++|+ +|+|.+.+.++
T Consensus       126 ~~l~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~  175 (372)
T 2ewv_A          126 DKVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPI  175 (372)
T ss_dssp             SSHHHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSC
T ss_pred             HHHHHHhhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccH
Confidence            45667778999999999999999999999999999998 89998777543

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=99.08  E-value=2.1e-12  Score=117.10  Aligned_cols=128  Identities=9%  Similarity=-0.120  Sum_probs=75.7

Q ss_pred             ccccccce--ecCccEEEEEcCCCCcHHHHHHHHhcCCCC-CCcEEEEEecCccccccccchheeehhhhccCCCCcccc
Q 036195            6 RPHLRYIE--DDGVKIIGLYGVRGVGKSTLIKQLNDMFSD-MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSIC   82 (183)
Q Consensus         6 ~~~l~~l~--i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p-~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~   82 (183)
                      +.|+++++  +++|++++|+||||||||||||+++++... ..|.      .+.        ...  ..++...      
T Consensus       660 ~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~------~vp--------a~~--~~i~~~d------  717 (918)
T 3thx_B          660 QYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGS------YVP--------AEE--ATIGIVD------  717 (918)
T ss_dssp             SSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTC------CBS--------SSE--EEEECCS------
T ss_pred             ceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCc------ccc--------chh--hhhhHHH------
Confidence            46777666  568999999999999999999999865211 0010      000        000  0000000      


Q ss_pred             ccccchHHHHHHHHcCCCCccCCCCCCCChhhhh--ee---cCchhhc---ccccccCcccccccc-cceeecCcccccC
Q 036195           83 HEALAFPCLERIYVHGCPSLRKLPFSLESGKRNG--VL---IGEEEWW---NQLEWDDEATKHVFS-SKLIITTPQTVIS  153 (183)
Q Consensus        83 ~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~--~i---~~~~~w~---~~l~~~d~~~~~~~~-~~~~~~~~~~~~~  153 (183)
                               .++..+++.+......+++|+|+++  .+   +.+|..+   |+..+-|+.....+. .++..+..+..+.
T Consensus       718 ---------~i~~~ig~~d~l~~~~stfs~em~~~~~il~~a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~t  788 (918)
T 3thx_B          718 ---------GIFTRMGAADNIYKGRSTFMEELTDTAEIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSL  788 (918)
T ss_dssp             ---------EEEEEC----------CCHHHHHHHHHHHHHHCCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCE
T ss_pred             ---------HHHHhCChHHHHHHhHHHhhHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCe
Confidence                     0112233334445567889999887  23   5677776   889999987666664 5666554445789


Q ss_pred             CCCCCceeeee
Q 036195          154 IPQPSYTYEAT  164 (183)
Q Consensus       154 ~~~~~~~~~~~  164 (183)
                      ++++||+.+.+
T Consensus       789 vl~vTH~~el~  799 (918)
T 3thx_B          789 TLFVTHYPPVC  799 (918)
T ss_dssp             EEEECSCGGGG
T ss_pred             EEEEeCcHHHH
Confidence            99999998766

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=99.08  E-value=9.9e-13  Score=120.56  Aligned_cols=136  Identities=9%  Similarity=-0.143  Sum_probs=82.4

Q ss_pred             cccccccee--cC-------ccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhc-cC
Q 036195            6 RPHLRYIED--DG-------VKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFF-KL   75 (183)
Q Consensus         6 ~~~l~~l~i--~~-------Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg-~l   75 (183)
                      +.|+.++++  ++       |++++|+||||||||||||++ |++.+-.                         .++ ++
T Consensus       769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~a-------------------------qiG~~V  822 (1022)
T 2o8b_B          769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVMA-------------------------QMGCYV  822 (1022)
T ss_dssp             CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHHH-------------------------TTTCCE
T ss_pred             ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHHh-------------------------heeEEe
Confidence            457777664  44       899999999999999999999 9876411                         011 11


Q ss_pred             CCCcc---ccccccchHHHHHHHHcCCCCccCCCCCCCChhhhh-----eecCchhhc---ccccccCccc-ccccccce
Q 036195           76 PNLKS---ICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNG-----VLIGEEEWW---NQLEWDDEAT-KHVFSSKL  143 (183)
Q Consensus        76 p~l~~---l~~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~-----~i~~~~~w~---~~l~~~d~~~-~~~~~~~~  143 (183)
                      |+...   ++..        ++..++..+......+++|+++++     ..+.++.++   |+..+-|+.. ...+..++
T Consensus       823 pq~~~~l~v~d~--------I~~rig~~d~~~~~~stf~~em~~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il  894 (1022)
T 2o8b_B          823 PAEVCRLTPIDR--------VFTRLGASDRIMSGESTFFVELSETASILMHATAHSLVLVDELGRGTATFDGTAIANAVV  894 (1022)
T ss_dssp             ESSEEEECCCSB--------EEEECC---------CHHHHHHHHHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHH
T ss_pred             ccCcCCCCHHHH--------HHHHcCCHHHHhhchhhhHHHHHHHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHH
Confidence            11100   0000        011223333333445677788776     236677775   6777777644 34455566


Q ss_pred             eecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          144 IITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ..+..+..+.++++||+++.+...+|++++.+
T Consensus       895 ~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~~  926 (1022)
T 2o8b_B          895 KELAETIKCRTLFSTHYHSLVEDYSQNVAVRL  926 (1022)
T ss_dssp             HHHHHTSCCEEEEECCCHHHHHHTSSCSSEEE
T ss_pred             HHHHhcCCCEEEEEeCCHHHHHHhCCcceeec
Confidence            65554447889999999999998898877654

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=99.08  E-value=1.2e-11  Score=93.13  Aligned_cols=38  Identities=26%  Similarity=0.385  Sum_probs=35.0

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcc
Q 036195           17 VKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ   56 (183)
Q Consensus        17 Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~   56 (183)
                      |++++|+||||||||||+++|+|+++ ++| |.++|.+..
T Consensus         1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~   38 (189)
T 2i3b_A            1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTE   38 (189)
T ss_dssp             CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECC
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecc
Confidence            78999999999999999999999999 999 999887653

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=99.07  E-value=2.4e-11  Score=92.21  Aligned_cols=43  Identities=28%  Similarity=0.411  Sum_probs=37.7

Q ss_pred             ecCccEEEEEcCCCCcHHHHHHHHhcCCCC---CCcEEEEEecCcc
Q 036195           14 DDGVKIIGLYGVRGVGKSTLIKQLNDMFSD---MSHKFAIYAVSLQ   56 (183)
Q Consensus        14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p---~~G~I~~~g~~~~   56 (183)
                      .++|++++|+||||||||||+++|+|+++|   +.|.|.++|..+.
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~   64 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLD   64 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCC
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCC
Confidence            578999999999999999999999999985   5788888776553

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=99.07  E-value=3.3e-11  Score=100.91  Aligned_cols=48  Identities=19%  Similarity=0.159  Sum_probs=42.4

Q ss_pred             ccccceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCc
Q 036195            8 HLRYIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSL   55 (183)
Q Consensus         8 ~l~~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~   55 (183)
                      +|+++-..+|++++|+|||||||||||++|+|++.|++|+|.+.+.++
T Consensus       158 ~L~~l~~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~i  205 (418)
T 1p9r_A          158 NFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPI  205 (418)
T ss_dssp             HHHHHHTSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSC
T ss_pred             HHHHHHHhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccc
Confidence            455553478999999999999999999999999999999999998765

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=99.05  E-value=6.3e-11  Score=101.57  Aligned_cols=43  Identities=12%  Similarity=0.062  Sum_probs=40.0

Q ss_pred             ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecC
Q 036195           12 IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVS   54 (183)
Q Consensus        12 l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~   54 (183)
                      +.+++|++++|+||||||||||+++|+|+++|++|.|++.|.+
T Consensus       255 ~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~  297 (511)
T 2oap_1          255 LAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTR  297 (511)
T ss_dssp             HHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSC
T ss_pred             HHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcc
Confidence            3478999999999999999999999999999999999999864

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=99.03  E-value=3.4e-11  Score=97.01  Aligned_cols=45  Identities=20%  Similarity=0.197  Sum_probs=26.9

Q ss_pred             ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEE---EecCcc
Q 036195           12 IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAI---YAVSLQ   56 (183)
Q Consensus        12 l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~---~g~~~~   56 (183)
                      +++.+|++++|+||||||||||+|+|+|+.+|.+|+|.+   .|+.++
T Consensus       168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt  215 (307)
T 1t9h_A          168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTT  215 (307)
T ss_dssp             GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------C
T ss_pred             HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccc
Confidence            457899999999999999999999999999999999998   776554

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=99.03  E-value=5.1e-11  Score=89.96  Aligned_cols=28  Identities=43%  Similarity=0.545  Sum_probs=23.9

Q ss_pred             cCccEEEEEcCCCCcHHHHHHHHhcCCC
Q 036195           15 DGVKIIGLYGVRGVGKSTLIKQLNDMFS   42 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~~   42 (183)
                      ++|++++|+||||||||||+++|+|+++
T Consensus         2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            5799999999999999999999999875

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=98.97  E-value=1.2e-10  Score=87.67  Aligned_cols=44  Identities=20%  Similarity=0.323  Sum_probs=33.6

Q ss_pred             cccccceecCccEEEEEcCCCCcHHHHHHHHhcCC-----CCCCcEEEE
Q 036195            7 PHLRYIEDDGVKIIGLYGVRGVGKSTLIKQLNDMF-----SDMSHKFAI   50 (183)
Q Consensus         7 ~~l~~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~-----~p~~G~I~~   50 (183)
                      +++++|.+.+|+.++|+|+||||||||++.++|..     .|+.|.+.+
T Consensus        16 ~~l~~~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~   64 (210)
T 1pui_A           16 PDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQL   64 (210)
T ss_dssp             SSGGGSSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CC
T ss_pred             CCHhHCCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCcccee
Confidence            57888999999999999999999999999999998     888888765

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=98.95  E-value=9.9e-11  Score=96.22  Aligned_cols=41  Identities=24%  Similarity=0.388  Sum_probs=37.2

Q ss_pred             cceecC--ccEEEEEcCCCCcHHHHHHHHhcCCCCCC----cEEEEE
Q 036195           11 YIEDDG--VKIIGLYGVRGVGKSTLIKQLNDMFSDMS----HKFAIY   51 (183)
Q Consensus        11 ~l~i~~--Ge~~~liGpNGaGKSTLl~~i~gl~~p~~----G~I~~~   51 (183)
                      +++|.+  |+.++|+||||||||||+++|+|+++|++    |+++++
T Consensus       162 ~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~  208 (365)
T 1lw7_A          162 PKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVF  208 (365)
T ss_dssp             CTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHH
T ss_pred             CHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHH
Confidence            446888  99999999999999999999999999999    888764

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=98.95  E-value=1.2e-10  Score=95.73  Aligned_cols=48  Identities=19%  Similarity=0.261  Sum_probs=39.2

Q ss_pred             cccccceecCccEEEEEcCCCCcHHHHHHHHhcCCCCC-CcEEEEEecC
Q 036195            7 PHLRYIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDM-SHKFAIYAVS   54 (183)
Q Consensus         7 ~~l~~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~-~G~I~~~g~~   54 (183)
                      ++++++.+.+|++++|+||||||||||+++|+|++.|+ +|.|...+.+
T Consensus       113 ~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~  161 (356)
T 3jvv_A          113 EVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDP  161 (356)
T ss_dssp             HHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESS
T ss_pred             HHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCc
Confidence            34556667899999999999999999999999999987 5776555443

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.94  E-value=4.6e-10  Score=84.28  Aligned_cols=35  Identities=29%  Similarity=0.341  Sum_probs=30.0

Q ss_pred             ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCc
Q 036195           12 IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSH   46 (183)
Q Consensus        12 l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G   46 (183)
                      +++.+|++++|+|||||||||++++|++++.|+.|
T Consensus         1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~   35 (207)
T 2j41_A            1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK   35 (207)
T ss_dssp             ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence            46889999999999999999999999999977655

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=98.93  E-value=3.6e-10  Score=84.13  Aligned_cols=37  Identities=30%  Similarity=0.326  Sum_probs=33.1

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcc
Q 036195           17 VKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ   56 (183)
Q Consensus        17 Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~   56 (183)
                      |++++|+||||||||||+++|++   |.+|.+.+++.++.
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~   38 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIIN   38 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchh
Confidence            78999999999999999999997   67899999987653

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=98.88  E-value=8.1e-10  Score=83.15  Aligned_cols=40  Identities=20%  Similarity=0.222  Sum_probs=34.0

Q ss_pred             eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcc
Q 036195           13 EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ   56 (183)
Q Consensus        13 ~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~   56 (183)
                      +..+|++++|+|||||||||++++|++.+    |.+.+++.++.
T Consensus        25 ~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~   64 (200)
T 4eun_A           25 TGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFH   64 (200)
T ss_dssp             ---CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGS
T ss_pred             cCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccc
Confidence            45789999999999999999999999987    88999987654

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=98.85  E-value=2.5e-10  Score=84.51  Aligned_cols=39  Identities=21%  Similarity=0.230  Sum_probs=31.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCCCCC---CcEEEEEecCcc
Q 036195           18 KIIGLYGVRGVGKSTLIKQLNDMFSDM---SHKFAIYAVSLQ   56 (183)
Q Consensus        18 e~~~liGpNGaGKSTLl~~i~gl~~p~---~G~I~~~g~~~~   56 (183)
                      ++++|+|+||||||||+++|+|+++|+   .|.|.++|.++.
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~   44 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDF   44 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccc
Confidence            589999999999999999999999998   899999988743

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=98.85  E-value=8.9e-10  Score=89.03  Aligned_cols=41  Identities=17%  Similarity=0.272  Sum_probs=37.0

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHhcCC--------CCCCcEEEEEecCccc
Q 036195           17 VKIIGLYGVRGVGKSTLIKQLNDMF--------SDMSHKFAIYAVSLQK   57 (183)
Q Consensus        17 Ge~~~liGpNGaGKSTLl~~i~gl~--------~p~~G~I~~~g~~~~~   57 (183)
                      =++++|+|+||||||||++.|.|+.        .|+.|+|.++|.++..
T Consensus         4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~   52 (318)
T 1nij_A            4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGD   52 (318)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECT
T ss_pred             ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhC
Confidence            3689999999999999999999997        7899999999987653

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=98.84  E-value=1.1e-09  Score=84.25  Aligned_cols=42  Identities=17%  Similarity=0.326  Sum_probs=37.1

Q ss_pred             cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcc
Q 036195           11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ   56 (183)
Q Consensus        11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~   56 (183)
                      ..+.++|++++|.|+|||||||++++|+++    .|+|.+.+++..
T Consensus        14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~   55 (230)
T 2vp4_A           14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVE   55 (230)
T ss_dssp             BTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHH
T ss_pred             cCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHH
Confidence            445689999999999999999999999998    788999887653

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=98.84  E-value=1.5e-09  Score=80.13  Aligned_cols=36  Identities=22%  Similarity=0.253  Sum_probs=31.1

Q ss_pred             cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcE
Q 036195           11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHK   47 (183)
Q Consensus        11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~   47 (183)
                      ++++.+| +.+|+||||||||||+++|.+++.+.+|.
T Consensus        21 ~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~   56 (182)
T 3kta_A           21 VIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAK   56 (182)
T ss_dssp             EEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTG
T ss_pred             EEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCccc
Confidence            3556788 99999999999999999999998877664

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=98.84  E-value=3.3e-10  Score=85.33  Aligned_cols=44  Identities=30%  Similarity=0.357  Sum_probs=38.4

Q ss_pred             ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEE--EEEecCcc
Q 036195           12 IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKF--AIYAVSLQ   56 (183)
Q Consensus        12 l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I--~~~g~~~~   56 (183)
                      +..++|++++|+|||||||||++++|++.+. ..|.+  ++++.++.
T Consensus        20 ~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~   65 (200)
T 3uie_A           20 LLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR   65 (200)
T ss_dssp             HHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred             hcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence            3468899999999999999999999999987 78988  88887653

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=98.82  E-value=7.9e-10  Score=85.82  Aligned_cols=38  Identities=18%  Similarity=0.203  Sum_probs=35.1

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHh---cCCCCCCcEEEEEec
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQLN---DMFSDMSHKFAIYAV   53 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i~---gl~~p~~G~I~~~g~   53 (183)
                      ++++++|+||||||||||+++|+   |+..|++|+|.+++.
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~   66 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENI   66 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHH
Confidence            57999999999999999999999   999999999988764

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.82  E-value=1.3e-09  Score=80.73  Aligned_cols=36  Identities=22%  Similarity=0.301  Sum_probs=30.3

Q ss_pred             cCccEEEEEcCCCCcHHHHHHHHhcCCCC-CCcEEEE
Q 036195           15 DGVKIIGLYGVRGVGKSTLIKQLNDMFSD-MSHKFAI   50 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~~p-~~G~I~~   50 (183)
                      .+|++++|+||||||||||+++|++..++ ..|.|..
T Consensus         3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~   39 (180)
T 1kgd_A            3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPH   39 (180)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeec
Confidence            36899999999999999999999999864 4566544

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=98.81  E-value=1.5e-09  Score=81.88  Aligned_cols=43  Identities=21%  Similarity=0.433  Sum_probs=39.0

Q ss_pred             eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCc
Q 036195           13 EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSL   55 (183)
Q Consensus        13 ~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~   55 (183)
                      ...+|++++|+|+|||||||++++|++++++..|.|.+.+.+.
T Consensus        18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~   60 (201)
T 1rz3_A           18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD   60 (201)
T ss_dssp             CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred             ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence            4678999999999999999999999999998999998887654

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=98.80  E-value=3e-10  Score=88.83  Aligned_cols=41  Identities=27%  Similarity=0.193  Sum_probs=37.5

Q ss_pred             cCccEEEEEcCCCCcHHHHHHHHh---cCCCCCCcEEE--------EEecCc
Q 036195           15 DGVKIIGLYGVRGVGKSTLIKQLN---DMFSDMSHKFA--------IYAVSL   55 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl~~i~---gl~~p~~G~I~--------~~g~~~   55 (183)
                      .+|++++|+|||||||||++++|+   |+..|++|.++        .+|.++
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~   76 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDI   76 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCc
Confidence            689999999999999999999999   99999999998        666655

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.80  E-value=1.4e-09  Score=91.00  Aligned_cols=31  Identities=29%  Similarity=0.176  Sum_probs=28.0

Q ss_pred             cceecCccE--EEEEcCCCCcHHHHHHHHhcCC
Q 036195           11 YIEDDGVKI--IGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        11 ~l~i~~Ge~--~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      +|++++|++  +||+||||||||||+++|+|+.
T Consensus        34 sl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~   66 (427)
T 2qag_B           34 NKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK   66 (427)
T ss_dssp             HHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred             ceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence            567999999  9999999999999999999984

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=98.77  E-value=5.2e-10  Score=82.68  Aligned_cols=40  Identities=18%  Similarity=0.181  Sum_probs=35.6

Q ss_pred             ccccceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcE
Q 036195            8 HLRYIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHK   47 (183)
Q Consensus         8 ~l~~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~   47 (183)
                      .++++++.+|+.++|+||||+|||||+++|++.+.|.+|.
T Consensus        29 ~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~   68 (180)
T 3ec2_A           29 FVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI   68 (180)
T ss_dssp             HHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC
T ss_pred             HHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC
Confidence            3568888999999999999999999999999999877773

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=98.77  E-value=6.1e-09  Score=79.91  Aligned_cols=41  Identities=15%  Similarity=0.131  Sum_probs=36.5

Q ss_pred             ecCccEEEEEcCCCCcHHHHHHHHhc--CCCC-----CCcEEEEEecC
Q 036195           14 DDGVKIIGLYGVRGVGKSTLIKQLND--MFSD-----MSHKFAIYAVS   54 (183)
Q Consensus        14 i~~Ge~~~liGpNGaGKSTLl~~i~g--l~~p-----~~G~I~~~g~~   54 (183)
                      +++|++++|+||||||||||++.+++  +.+|     ..|.+++++.+
T Consensus        21 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~   68 (243)
T 1n0w_A           21 IETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG   68 (243)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred             CcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence            89999999999999999999999999  5655     67888888875

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.77  E-value=8.8e-10  Score=89.44  Aligned_cols=39  Identities=26%  Similarity=0.318  Sum_probs=28.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhc-CCCCCCcEEEEEecCcc
Q 036195           18 KIIGLYGVRGVGKSTLIKQLND-MFSDMSHKFAIYAVSLQ   56 (183)
Q Consensus        18 e~~~liGpNGaGKSTLl~~i~g-l~~p~~G~I~~~g~~~~   56 (183)
                      ..+.|.||||+||||+++++++ ++.|+.|.+.++|.+..
T Consensus        37 ~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~   76 (354)
T 1sxj_E           37 PHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFV   76 (354)
T ss_dssp             CCEEEECSTTSSHHHHHHTHHHHHSCTTCCC---------
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeec
Confidence            3489999999999999999999 89999999999887543

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.76  E-value=2.3e-09  Score=77.44  Aligned_cols=40  Identities=25%  Similarity=0.274  Sum_probs=35.1

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHhcCCCCCCc--EEEEEecCcc
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQLNDMFSDMSH--KFAIYAVSLQ   56 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G--~I~~~g~~~~   56 (183)
                      +|+.++|+||||+|||||++++++...+ +|  .+++.+.++.
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~   76 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMP   76 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhh
Confidence            8999999999999999999999999877 58  7777776553

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=98.75  E-value=1.6e-09  Score=96.77  Aligned_cols=42  Identities=19%  Similarity=0.135  Sum_probs=37.0

Q ss_pred             ccccccceecCccEEEEEcCCCCcHHHHHHHHhcCCC-CCCcEE
Q 036195            6 RPHLRYIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFS-DMSHKF   48 (183)
Q Consensus         6 ~~~l~~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~-p~~G~I   48 (183)
                      +.+++++++. |++++|+||||||||||||+|+|+.. |+.|.+
T Consensus       566 ~~vl~disl~-g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~  608 (765)
T 1ewq_A          566 EFVPNDLEMA-HELVLITGPNMAGKSTFLRQTALIALLAQVGSF  608 (765)
T ss_dssp             CCCCEEEEES-SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCC
T ss_pred             ceEeeeccCC-CcEEEEECCCCCChHHHHHHHHhhhhhcccCce
Confidence            4677888888 99999999999999999999999974 677764

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=98.73  E-value=5.7e-09  Score=85.41  Aligned_cols=44  Identities=20%  Similarity=0.161  Sum_probs=38.7

Q ss_pred             ceecCccEEEEEcCCCCcHHHHHHHHhcCC--CCCC----cE-EEEEecCc
Q 036195           12 IEDDGVKIIGLYGVRGVGKSTLIKQLNDMF--SDMS----HK-FAIYAVSL   55 (183)
Q Consensus        12 l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~--~p~~----G~-I~~~g~~~   55 (183)
                      ..+++|++++|+||||||||||++.+++..  +|++    |. |++++.+.
T Consensus       126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~  176 (349)
T 1pzn_A          126 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT  176 (349)
T ss_dssp             SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC
T ss_pred             CCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC
Confidence            468999999999999999999999999998  6666    68 88888754

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=98.72  E-value=7.3e-09  Score=81.97  Aligned_cols=46  Identities=17%  Similarity=0.172  Sum_probs=38.3

Q ss_pred             cccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcc
Q 036195            7 PHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ   56 (183)
Q Consensus         7 ~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~   56 (183)
                      .+++  ++.+.+|  ++|+||||||||||+++|+|...+  |.|.++|.++.
T Consensus        34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~   81 (274)
T 2x8a_A           34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELL   81 (274)
T ss_dssp             HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTC
T ss_pred             HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHH
Confidence            3455  4456777  999999999999999999999876  78999987764

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=98.70  E-value=8.6e-09  Score=85.55  Aligned_cols=41  Identities=22%  Similarity=0.306  Sum_probs=37.5

Q ss_pred             eecCccEEEEEcCCCCcHHHHHHHHhc------------CCCCCCcEEEEEec
Q 036195           13 EDDGVKIIGLYGVRGVGKSTLIKQLND------------MFSDMSHKFAIYAV   53 (183)
Q Consensus        13 ~i~~Ge~~~liGpNGaGKSTLl~~i~g------------l~~p~~G~I~~~g~   53 (183)
                      .+.+|+.+||+|+||||||||+++|+|            .+.|++|.+.+.|.
T Consensus        16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~   68 (392)
T 1ni3_A           16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDE   68 (392)
T ss_dssp             SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCH
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCc
Confidence            578999999999999999999999999            66799999999874

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=98.69  E-value=5.9e-09  Score=83.88  Aligned_cols=45  Identities=27%  Similarity=0.359  Sum_probs=40.5

Q ss_pred             ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcc
Q 036195           12 IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ   56 (183)
Q Consensus        12 l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~   56 (183)
                      ++..+|++++|+|||||||||+++.|++.+.+..|+|.+.+.+..
T Consensus        99 ~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~  143 (306)
T 1vma_A           99 VPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTF  143 (306)
T ss_dssp             CCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred             ccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccc
Confidence            346789999999999999999999999999999999999887754

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=98.68  E-value=1.6e-10  Score=93.92  Aligned_cols=37  Identities=22%  Similarity=0.211  Sum_probs=30.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCC----CCCCcEEEEEecC
Q 036195           18 KIIGLYGVRGVGKSTLIKQLNDMF----SDMSHKFAIYAVS   54 (183)
Q Consensus        18 e~~~liGpNGaGKSTLl~~i~gl~----~p~~G~I~~~g~~   54 (183)
                      +.++|+||||+|||||+++|++.+    .+++|.+...+.+
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~   92 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGD   92 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHH
Confidence            789999999999999999999998    6667766554443

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=98.68  E-value=8.9e-09  Score=75.47  Aligned_cols=38  Identities=26%  Similarity=0.331  Sum_probs=33.3

Q ss_pred             cCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcc
Q 036195           15 DGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ   56 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~   56 (183)
                      .+|++++|+|||||||||+++.|++.+    |.+.+++.++.
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~   43 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLH   43 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGC
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCcccc
Confidence            579999999999999999999999875    78888876653

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=98.68  E-value=7.2e-09  Score=78.32  Aligned_cols=34  Identities=26%  Similarity=0.297  Sum_probs=27.3

Q ss_pred             cccceecCccEEEEEcCCCCcHHHHHHHHhcCCC
Q 036195            9 LRYIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFS   42 (183)
Q Consensus         9 l~~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~   42 (183)
                      .+++...+|++++|+||||||||||++.|++..+
T Consensus        11 ~~~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           11 RENLYFQGRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             -----CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             cccCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            4567778999999999999999999999999875

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.66  E-value=1.5e-08  Score=76.76  Aligned_cols=29  Identities=28%  Similarity=0.257  Sum_probs=27.6

Q ss_pred             cCccEEEEEcCCCCcHHHHHHHHhcCCCC
Q 036195           15 DGVKIIGLYGVRGVGKSTLIKQLNDMFSD   43 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~~p   43 (183)
                      ++|++++|+||||||||||++.|++.++|
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~   34 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDPET   34 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence            68999999999999999999999999876

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=98.66  E-value=3.7e-09  Score=91.36  Aligned_cols=43  Identities=21%  Similarity=0.246  Sum_probs=38.0

Q ss_pred             eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCc-EEE-EEecCc
Q 036195           13 EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSH-KFA-IYAVSL   55 (183)
Q Consensus        13 ~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G-~I~-~~g~~~   55 (183)
                      .+.+|++++|+|+||||||||+++|++.+.|++| ++. ++|.++
T Consensus       365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~  409 (552)
T 3cr8_A          365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV  409 (552)
T ss_dssp             GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred             ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence            4789999999999999999999999999999987 785 676554

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=98.65  E-value=1e-08  Score=76.29  Aligned_cols=37  Identities=22%  Similarity=0.331  Sum_probs=31.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCC-----------CCcEEEEEecCc
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMFSD-----------MSHKFAIYAVSL   55 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~~p-----------~~G~I~~~g~~~   55 (183)
                      .++|+|+||||||||++.++|...+           ++|+|.++|.++
T Consensus        31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~   78 (191)
T 1oix_A           31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI   78 (191)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEE
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEE
Confidence            6899999999999999999999865           478888877644

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=98.62  E-value=8.5e-09  Score=82.70  Aligned_cols=46  Identities=24%  Similarity=0.192  Sum_probs=20.4

Q ss_pred             ccccccceecCccEEEEEcCCCCcHHHHHHHHhcC-CCCCCcEEEEEecCcc
Q 036195            6 RPHLRYIEDDGVKIIGLYGVRGVGKSTLIKQLNDM-FSDMSHKFAIYAVSLQ   56 (183)
Q Consensus         6 ~~~l~~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl-~~p~~G~I~~~g~~~~   56 (183)
                      +.+++++++.    ++|+||||||||||++.|.|. ..|++| +.+.|.++.
T Consensus        11 ~~~l~~~~~~----I~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~   57 (301)
T 2qnr_A           11 KSVKKGFEFT----LMVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIE   57 (301)
T ss_dssp             -------CEE----EEEEEETTSSHHHHHHHHHC------------------
T ss_pred             EEEEcCCCEE----EEEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccC
Confidence            4567765542    399999999999999999998 889999 877776543

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=98.61  E-value=1.3e-08  Score=82.37  Aligned_cols=46  Identities=24%  Similarity=0.477  Sum_probs=41.6

Q ss_pred             ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccc
Q 036195           12 IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQK   57 (183)
Q Consensus        12 l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~   57 (183)
                      |++.+|++++|+|+||+||||++..|++.+.+..|+|.+.+.++..
T Consensus       100 ~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r  145 (320)
T 1zu4_A          100 FKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFR  145 (320)
T ss_dssp             CCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSC
T ss_pred             ccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence            3468899999999999999999999999999999999999887753

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=98.58  E-value=2.3e-08  Score=83.77  Aligned_cols=71  Identities=10%  Similarity=-0.001  Sum_probs=54.2

Q ss_pred             CCCCCCChhhhhe--e----c----Cchhhc---ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceE
Q 036195          105 LPFSLESGKRNGV--L----I----GEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYEL  171 (183)
Q Consensus       105 ~~~~~LSgGqk~~--i----~----~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (183)
                      .++..|||||+++  +    +    .+|..+   |+....|+..+..+..++.....+ ...++++||+. .++..||++
T Consensus       329 ~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~-~~~~ii~th~~-~~~~~~d~~  406 (430)
T 1w1w_A          329 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNP-DLQFIVISLKN-TMFEKSDAL  406 (430)
T ss_dssp             CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBT-TBEEEEECSCH-HHHTTCSEE
T ss_pred             cccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcC-CCEEEEEECCH-HHHHhCCEE
Confidence            3445699999982  1    2    345554   889999999999998888766543 56789999995 457889999


Q ss_pred             EEEeeC
Q 036195          172 ICIDVD  177 (183)
Q Consensus       172 ~~~~~~  177 (183)
                      |.|..+
T Consensus       407 ~~~~~~  412 (430)
T 1w1w_A          407 VGVYRQ  412 (430)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            999876

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=98.58  E-value=2.8e-08  Score=80.45  Aligned_cols=36  Identities=31%  Similarity=0.429  Sum_probs=31.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC--CCCcEEEEEecC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMFS--DMSHKFAIYAVS   54 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~~--p~~G~I~~~g~~   54 (183)
                      ++||+||||||||||+++|++++.  |++|.+.+-+.+
T Consensus        94 iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D  131 (321)
T 3tqc_A           94 IIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTD  131 (321)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeec
Confidence            999999999999999999999987  578887766554

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=98.56  E-value=4.6e-08  Score=80.33  Aligned_cols=64  Identities=11%  Similarity=-0.009  Sum_probs=49.4

Q ss_pred             CCCCC-CCChhhhhe------ec---------Cchhhc---ccccccCcccccccccceeecCcccccCCCCCCceeeee
Q 036195          104 KLPFS-LESGKRNGV------LI---------GEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEAT  164 (183)
Q Consensus       104 ~~~~~-~LSgGqk~~------i~---------~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (183)
                      ++++. .+|+||+|+      ++         ++|..+   |++..-|+..+..+..++..+.    ..+++++| .+. 
T Consensus       259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~----qt~i~~th-~~~-  332 (359)
T 2o5v_A          259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP----QAIVTGTE-LAP-  332 (359)
T ss_dssp             TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS----EEEEEESS-CCT-
T ss_pred             CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC----cEEEEEEe-ccc-
Confidence            56777 799999982      24         677775   8899999999999988887664    35666788 444 


Q ss_pred             ecccceEEEEe
Q 036195          165 IRPRYELICID  175 (183)
Q Consensus       165 ~~~~~~~~~~~  175 (183)
                        .+|++++++
T Consensus       333 --~~~~i~~l~  341 (359)
T 2o5v_A          333 --GAALTLRAQ  341 (359)
T ss_dssp             --TCSEEEEEE
T ss_pred             --cCCEEEEEE
Confidence              899999986

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=98.56  E-value=2.3e-08  Score=80.06  Aligned_cols=42  Identities=29%  Similarity=0.330  Sum_probs=37.5

Q ss_pred             cCccEEEEEcCCCCcHHHHHHHHhcCCCCCCc-EEEEEecCcc
Q 036195           15 DGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSH-KFAIYAVSLQ   56 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G-~I~~~g~~~~   56 (183)
                      .+|++++++|||||||||+++.|++.+.+++| +|.+-+.+..
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~  145 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTY  145 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcc
Confidence            57999999999999999999999999998888 7888777654

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=98.55  E-value=2.7e-08  Score=89.31  Aligned_cols=134  Identities=9%  Similarity=-0.147  Sum_probs=73.1

Q ss_pred             cccccccee-cCccEEEEEcCCCCcHHHHHHHHhcCCCC-CCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRYIED-DGVKIIGLYGVRGVGKSTLIKQLNDMFSD-MSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~l~i-~~Ge~~~liGpNGaGKSTLl~~i~gl~~p-~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +.+++++++ ++|++++|+||||||||||||+|+|+..+ ..|.      .+..        .  ...++.+.+   ++.
T Consensus       595 ~~vlndisl~~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~------~vpa--------~--~~~i~~~~~---i~~  655 (800)
T 1wb9_A          595 PFIANPLNLSPQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS------YVPA--------Q--KVEIGPIDR---IFT  655 (800)
T ss_dssp             CCCCEEEEECSSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC------CBSS--------S--EEEECCCCE---EEE
T ss_pred             ceeeecccccCCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc------ccch--------h--cccceeHHH---HHh
Confidence            456777766 58999999999999999999999997422 2231      0100        0  011222111   111


Q ss_pred             cccchHHHHHHHHcCCCCccCCCCCCCChhhhh--e---ecCchhhc---ccccccCcccccc-cccceeecCcccccCC
Q 036195           84 EALAFPCLERIYVHGCPSLRKLPFSLESGKRNG--V---LIGEEEWW---NQLEWDDEATKHV-FSSKLIITTPQTVISI  154 (183)
Q Consensus        84 ~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~--~---i~~~~~w~---~~l~~~d~~~~~~-~~~~~~~~~~~~~~~~  154 (183)
                      ..            +..+......+.+|+++++  .   .+.+|..+   |+..+-|+..... +..++..+..+..+.+
T Consensus       656 ~~------------~~~d~l~~~~stf~~e~~~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~v  723 (800)
T 1wb9_A          656 RV------------GAADDLASGRSTFMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALT  723 (800)
T ss_dssp             EE------------C-----------CHHHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEE
T ss_pred             hC------------CHHHHHHhhhhhhhHHHHHHHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeE
Confidence            11            1111112233456777665  2   25677775   6666666543333 2445555544347889


Q ss_pred             CCCCceeeeeecccceE
Q 036195          155 PQPSYTYEATIRPRYEL  171 (183)
Q Consensus       155 ~~~~~~~~~~~~~~~~~  171 (183)
                      +++||+.+.+ ..+|++
T Consensus       724 l~~TH~~el~-~l~d~~  739 (800)
T 1wb9_A          724 LFATHYFELT-QLPEKM  739 (800)
T ss_dssp             EEECSCGGGG-GHHHHS
T ss_pred             EEEeCCHHHH-HHhhhh
Confidence            9999998765 466654

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=98.55  E-value=1.7e-08  Score=84.37  Aligned_cols=31  Identities=26%  Similarity=0.342  Sum_probs=29.0

Q ss_pred             cceecCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      +|+++.|+.++|+|+|||||||||++|++..
T Consensus       151 ~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~  181 (416)
T 1udx_A          151 RLELMLIADVGLVGYPNAGKSSLLAAMTRAH  181 (416)
T ss_dssp             EEEECCSCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred             eeEEcCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence            5679999999999999999999999999983

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=98.54  E-value=2.8e-08  Score=79.46  Aligned_cols=48  Identities=21%  Similarity=0.234  Sum_probs=42.1

Q ss_pred             ccceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccc
Q 036195           10 RYIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQK   57 (183)
Q Consensus        10 ~~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~   57 (183)
                      +++++.+|++++++|+||+||||+++.|++++.+..|+|.+.+.+++.
T Consensus        91 ~~i~~~~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~  138 (295)
T 1ls1_A           91 RLPVLKDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR  138 (295)
T ss_dssp             CCCCCCSSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred             ceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCccc
Confidence            344444899999999999999999999999999999999999988764

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=98.53  E-value=4e-08  Score=76.29  Aligned_cols=41  Identities=17%  Similarity=0.096  Sum_probs=35.1

Q ss_pred             cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCc
Q 036195           11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSL   55 (183)
Q Consensus        11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~   55 (183)
                      ++++.+|  +.|+||||+|||||+++|++...  .|.+.+++.++
T Consensus        45 ~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~   85 (254)
T 1ixz_A           45 GARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDF   85 (254)
T ss_dssp             TCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHH
T ss_pred             CCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHH
Confidence            3456777  89999999999999999999985  88999988654

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=98.51  E-value=4.8e-08  Score=76.97  Aligned_cols=42  Identities=17%  Similarity=0.082  Sum_probs=35.5

Q ss_pred             cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcc
Q 036195           11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ   56 (183)
Q Consensus        11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~   56 (183)
                      ++++.+|  ++|+||||+|||||+++|++...  .|.|.+++.++.
T Consensus        69 ~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~  110 (278)
T 1iy2_A           69 GARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFV  110 (278)
T ss_dssp             TCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHH
T ss_pred             CCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHH
Confidence            3456777  89999999999999999999985  889999886543

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=98.49  E-value=4.5e-08  Score=80.02  Aligned_cols=42  Identities=33%  Similarity=0.510  Sum_probs=37.1

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccc
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQK   57 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~   57 (183)
                      ++.+++|+|++|||||||++.|+|...+.+|+|.+.+.++..
T Consensus        73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~  114 (349)
T 2www_A           73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSS  114 (349)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCC
Confidence            478999999999999999999999999999999998877653

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=98.47  E-value=9.2e-08  Score=72.15  Aligned_cols=38  Identities=18%  Similarity=0.029  Sum_probs=31.3

Q ss_pred             ecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEec
Q 036195           14 DDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAV   53 (183)
Q Consensus        14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~   53 (183)
                      +.+|++++|+||||||||||++.+++  .+..+.+++...
T Consensus        17 i~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~   54 (220)
T 2cvh_A           17 FAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTE   54 (220)
T ss_dssp             BCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESS
T ss_pred             CcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECC
Confidence            89999999999999999999999999  444445555543

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=98.46  E-value=3.1e-09  Score=96.37  Aligned_cols=137  Identities=11%  Similarity=-0.088  Sum_probs=93.2

Q ss_pred             HHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcc-ccccc-------cchHHHHHHHHcCCCCc-
Q 036195           32 TLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKS-ICHEA-------LAFPCLERIYVHGCPSL-  102 (183)
Q Consensus        32 TLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~-l~~~~-------~~~~~l~vLe~l~L~~L-  102 (183)
                      |...+..+.++|.+++|.++|+++.....   .+..+.+  .++.+... .....       ......+.+..+++..+ 
T Consensus       383 ~C~~C~g~rl~~~~~~V~i~G~~i~~~~~---~~v~~~l--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~vgL~~l~  457 (916)
T 3pih_A          383 TCSVCGGRRLNREALSVKINGLNIHEFTE---LSISEEL--EFLKNLNLTEREREIVGELLKEIEKRLEFLVDVGLEYLT  457 (916)
T ss_dssp             ECTTTCSCCBCTTGGGEEETTEEHHHHHH---SBHHHHH--HHHHSCCCCTTTTTTHHHHHHHHHHHHHHHHTTTCTTCB
T ss_pred             cchhcccccCChHhcCcEECCccHHHhhh---CCHHHHH--HHHHhccCcHHHHHHHHhhHHHHHHHHHHHHHcCCcccc
Confidence            34456667789999999999988753211   0111111  11111110 00000       01234567888999876 


Q ss_pred             cCCCCCCCChhhhhe------ecCchh--hc---ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceE
Q 036195          103 RKLPFSLESGKRNGV------LIGEEE--WW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYEL  171 (183)
Q Consensus       103 ~~~~~~~LSgGqk~~------i~~~~~--w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (183)
                      .++++.+|||||+|+      +..+|+  .+   ||....|+.....+..++..+..+ ..+|+++|||++++. .||++
T Consensus       458 l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~-G~TvivVtHd~~~~~-~aD~i  535 (916)
T 3pih_A          458 LSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDL-GNTVIVVEHDEEVIR-NADHI  535 (916)
T ss_dssp             TTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTT-TCEEEEECCCHHHHH-TCSEE
T ss_pred             ccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHH-hCCEE
Confidence            689999999999983      244454  54   899999999999999999988766 899999999998764 59999


Q ss_pred             EEEe
Q 036195          172 ICID  175 (183)
Q Consensus       172 ~~~~  175 (183)
                      +.|.
T Consensus       536 i~lg  539 (916)
T 3pih_A          536 IDIG  539 (916)
T ss_dssp             EEEE
T ss_pred             EEEc
Confidence            9983

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=98.46  E-value=4.9e-08  Score=72.84  Aligned_cols=37  Identities=22%  Similarity=0.317  Sum_probs=29.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC-----CC------CcEEEEEecCc
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMFS-----DM------SHKFAIYAVSL   55 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~~-----p~------~G~I~~~g~~~   55 (183)
                      .++|+|+||||||||++.++|...     |+      .|+|.++|.++
T Consensus         7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~   54 (199)
T 2f9l_A            7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI   54 (199)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEE
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEE
Confidence            579999999999999999999853     43      56777776543

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=98.45  E-value=1.3e-07  Score=78.77  Aligned_cols=41  Identities=20%  Similarity=0.080  Sum_probs=34.0

Q ss_pred             ecCccEEEEEcCCCCcHHHHHH--HHhcCCCCCCc-----EEEEEecC
Q 036195           14 DDGVKIIGLYGVRGVGKSTLIK--QLNDMFSDMSH-----KFAIYAVS   54 (183)
Q Consensus        14 i~~Ge~~~liGpNGaGKSTLl~--~i~gl~~p~~G-----~I~~~g~~   54 (183)
                      +++|++++|+||||||||||++  +++++.+++.|     .++|++..
T Consensus       175 I~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~  222 (400)
T 3lda_A          175 VETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG  222 (400)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred             cCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence            8999999999999999999999  44577766444     78888775

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=98.45  E-value=7e-08  Score=70.34  Aligned_cols=33  Identities=30%  Similarity=0.224  Sum_probs=28.0

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEe
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYA   52 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g   52 (183)
                      .|++++|+|||||||||++++|++.+.+    +.+++
T Consensus         3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~   35 (173)
T 1kag_A            3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS   35 (173)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence            4688999999999999999999998754    55554

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.45  E-value=1.1e-07  Score=79.56  Aligned_cols=37  Identities=30%  Similarity=0.205  Sum_probs=28.8

Q ss_pred             ccccccceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCc
Q 036195            6 RPHLRYIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSH   46 (183)
Q Consensus         6 ~~~l~~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G   46 (183)
                      +++++++++.    ++|+||||||||||+++|+|+..|..|
T Consensus        24 ~~vl~~vsf~----I~lvG~sGaGKSTLln~L~g~~~~~~~   60 (418)
T 2qag_C           24 KSVKRGFEFT----LMVVGESGLGKSTLINSLFLTDLYSPE   60 (418)
T ss_dssp             TTCC-CCCEE----EEEECCTTSSHHHHHHHHTTCCCCCCC
T ss_pred             EEEecCCCEE----EEEECCCCCcHHHHHHHHhCCCCCCCC
Confidence            4566666543    499999999999999999999875544

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=98.44  E-value=7.4e-08  Score=78.44  Aligned_cols=50  Identities=24%  Similarity=0.267  Sum_probs=42.6

Q ss_pred             ccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcc
Q 036195            7 PHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ   56 (183)
Q Consensus         7 ~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~   56 (183)
                      .++++  +.+.+|.+++|+|+||||||||++.|++.+.+..|+|.+-+.+..
T Consensus        44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~   95 (341)
T 2p67_A           44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPS   95 (341)
T ss_dssp             HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred             HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCC
Confidence            45553  457899999999999999999999999999888999988776654

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=98.41  E-value=7.7e-08  Score=79.47  Aligned_cols=42  Identities=19%  Similarity=0.120  Sum_probs=35.0

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEE
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAI   50 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~   50 (183)
                      .++++++  .+++|++++|+||||||||||+++|+|.   .+|.+..
T Consensus       156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~  199 (377)
T 1svm_A          156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALN  199 (377)
T ss_dssp             HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEEC
T ss_pred             HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEE
Confidence            4556644  6999999999999999999999999985   4677665

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=98.39  E-value=7.9e-08  Score=70.72  Aligned_cols=40  Identities=18%  Similarity=0.213  Sum_probs=32.9

Q ss_pred             cCccEEEEEcCCCCcHHHHHHHHhcCCCCCCc--EEEEEecCc
Q 036195           15 DGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSH--KFAIYAVSL   55 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G--~I~~~g~~~   55 (183)
                      .+|++++|+|++||||||+.+.|++.+++ .|  .+.+++..+
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~   44 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI   44 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHH
Confidence            47899999999999999999999998866 56  666676544

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=98.37  E-value=1.8e-07  Score=70.07  Aligned_cols=36  Identities=25%  Similarity=0.266  Sum_probs=24.8

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      ...++++  ++.+|++++|+||+||||||+.+.|+..+
T Consensus        12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l   49 (199)
T 3vaa_A           12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL   49 (199)
T ss_dssp             ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence            3456644  57899999999999999999999999765

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=98.33  E-value=2.8e-07  Score=69.28  Aligned_cols=30  Identities=37%  Similarity=0.540  Sum_probs=27.6

Q ss_pred             eecCccEEEEEcCCCCcHHHHHHHHhcCCC
Q 036195           13 EDDGVKIIGLYGVRGVGKSTLIKQLNDMFS   42 (183)
Q Consensus        13 ~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~   42 (183)
                      ++.+|++++|+|++||||||+.+.|++.+.
T Consensus        17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~   46 (207)
T 2qt1_A           17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP   46 (207)
T ss_dssp             CSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            378899999999999999999999999874

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=98.31  E-value=6.3e-08  Score=73.65  Aligned_cols=34  Identities=26%  Similarity=0.292  Sum_probs=29.3

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHhcCC---CCCCcEEEE
Q 036195           17 VKIIGLYGVRGVGKSTLIKQLNDMF---SDMSHKFAI   50 (183)
Q Consensus        17 Ge~~~liGpNGaGKSTLl~~i~gl~---~p~~G~I~~   50 (183)
                      +.+++|+||+||||||+.++|++.+   .+++|.+..
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~   41 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR   41 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence            5689999999999999999999866   667777765

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=98.30  E-value=2.1e-08  Score=72.38  Aligned_cols=72  Identities=15%  Similarity=0.131  Sum_probs=60.7

Q ss_pred             cCCCCCCCChhhhhee--c----------Cchhhc---ccccccCcccccccccceeecCcccccCCCCCCceeeeeecc
Q 036195          103 RKLPFSLESGKRNGVL--I----------GEEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRP  167 (183)
Q Consensus       103 ~~~~~~~LSgGqk~~i--~----------~~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (183)
                      .++++.+|||||+|++  +          .+|+.+   ||....|+..+..+...+..+..+ ..+++++|||. ...+.
T Consensus        51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiiivsH~~-~~~~~  128 (148)
T 1f2t_B           51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQVILVSHDE-ELKDA  128 (148)
T ss_dssp             EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGG-SSEEEEEESCG-GGGGG
T ss_pred             ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHcc-CCEEEEEEChH-HHHHh
Confidence            5678999999999843  2          567876   899999999999999998877655 67899999999 56799


Q ss_pred             cceEEEEee
Q 036195          168 RYELICIDV  176 (183)
Q Consensus       168 ~~~~~~~~~  176 (183)
                      ||+++.++-
T Consensus       129 ~d~ii~l~~  137 (148)
T 1f2t_B          129 ADHVIRISL  137 (148)
T ss_dssp             CSEEEEEEE
T ss_pred             CCEEEEEEc
Confidence            999999973

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=98.27  E-value=4.9e-07  Score=65.05  Aligned_cols=28  Identities=29%  Similarity=0.269  Sum_probs=22.9

Q ss_pred             ceecCccEEEEEcCCCCcHHHHHHHHhcC
Q 036195           12 IEDDGVKIIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        12 l~i~~Ge~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      +++.+| +.+|+|||||||||++.+|.-.
T Consensus        19 i~f~~g-~~~I~G~NGsGKStil~Ai~~~   46 (149)
T 1f2t_A           19 VEFKEG-INLIIGQNGSGKSSLLDAILVG   46 (149)
T ss_dssp             EECCSE-EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEcCCC-eEEEECCCCCCHHHHHHHHHHH
Confidence            344544 9999999999999999999743

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=98.25  E-value=1e-07  Score=72.14  Aligned_cols=45  Identities=20%  Similarity=0.238  Sum_probs=38.7

Q ss_pred             cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCc--EEEEEecCc
Q 036195           11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSH--KFAIYAVSL   55 (183)
Q Consensus        11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G--~I~~~g~~~   55 (183)
                      .+.+.+|.++.|+|++||||||+.+.|++.+.|..|  .+.+++..+
T Consensus        19 ~~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~   65 (211)
T 1m7g_A           19 ELRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI   65 (211)
T ss_dssp             HHHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred             cccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence            456789999999999999999999999999987888  777776543

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=98.22  E-value=5.7e-07  Score=78.45  Aligned_cols=44  Identities=16%  Similarity=0.302  Sum_probs=38.4

Q ss_pred             eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCC-cEEEEEecCcc
Q 036195           13 EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMS-HKFAIYAVSLQ   56 (183)
Q Consensus        13 ~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~-G~I~~~g~~~~   56 (183)
                      .+.+|+.+.|+||||+|||||+++|+++..+.. |.+.+.+.+..
T Consensus        56 ~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~  100 (604)
T 3k1j_A           56 AANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPED  100 (604)
T ss_dssp             HHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTC
T ss_pred             cccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccc
Confidence            478999999999999999999999999999887 77777776543

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=98.21  E-value=2.4e-07  Score=72.37  Aligned_cols=36  Identities=25%  Similarity=0.256  Sum_probs=30.8

Q ss_pred             ccccccc--eecC---ccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195            6 RPHLRYI--EDDG---VKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus         6 ~~~l~~l--~i~~---Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      +++|+++  ++.+   |++++|+|++||||||+.++|++.+
T Consensus        32 ~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l   72 (250)
T 3nwj_A           32 QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL   72 (250)
T ss_dssp             CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             chhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence            4567644  5788   9999999999999999999999865

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=98.21  E-value=7.4e-07  Score=74.63  Aligned_cols=47  Identities=19%  Similarity=0.206  Sum_probs=41.2

Q ss_pred             cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccc
Q 036195           11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQK   57 (183)
Q Consensus        11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~   57 (183)
                      ++++.++++++++|+|||||||++..|++.+.+..|+|.+.+.++..
T Consensus        92 ~i~l~~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r  138 (425)
T 2ffh_A           92 LPVLKDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR  138 (425)
T ss_dssp             CCCCCSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSC
T ss_pred             cccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccC
Confidence            34444899999999999999999999999999999999998887654

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=98.19  E-value=7.9e-07  Score=68.04  Aligned_cols=40  Identities=15%  Similarity=0.048  Sum_probs=29.8

Q ss_pred             ecCccEEEEEcCCCCcHHHHHH-HHhcCCCCCCcEEEEEec
Q 036195           14 DDGVKIIGLYGVRGVGKSTLIK-QLNDMFSDMSHKFAIYAV   53 (183)
Q Consensus        14 i~~Ge~~~liGpNGaGKSTLl~-~i~gl~~p~~G~I~~~g~   53 (183)
                      +.+|+++.|+||||||||||+. ++.+..+...+.+++...
T Consensus        20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e   60 (247)
T 2dr3_A           20 IPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE   60 (247)
T ss_dssp             EETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence            8999999999999999999954 545555444455555543

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=98.19  E-value=9.5e-07  Score=66.24  Aligned_cols=30  Identities=33%  Similarity=0.434  Sum_probs=25.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEec
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAV   53 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~   53 (183)
                      +++|+|||||||||+.++|+++     |...++..
T Consensus         4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~d   33 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDAD   33 (206)
T ss_dssp             EEEEECSTTSCHHHHHHHHHTT-----TCCEEEHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHC-----CCcccchH
Confidence            6899999999999999999994     55566543

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.16  E-value=5.3e-07  Score=72.15  Aligned_cols=41  Identities=24%  Similarity=0.402  Sum_probs=37.9

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccc
Q 036195           17 VKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQK   57 (183)
Q Consensus        17 Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~   57 (183)
                      |++++++|+||+||||++..|++.+.+..++|.+.+.+.+.
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r  138 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYR  138 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            89999999999999999999999999999999998887654

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=98.14  E-value=7.6e-07  Score=65.76  Aligned_cols=38  Identities=21%  Similarity=0.354  Sum_probs=33.4

Q ss_pred             eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEE
Q 036195           13 EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAI   50 (183)
Q Consensus        13 ~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~   50 (183)
                      ...+|.++.|+|++||||||+.+.|+..+.+..+.+.+
T Consensus         9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~   46 (186)
T 2yvu_A            9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEV   46 (186)
T ss_dssp             CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence            35689999999999999999999999998877777754

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=98.10  E-value=6.8e-07  Score=77.10  Aligned_cols=37  Identities=24%  Similarity=0.330  Sum_probs=34.0

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEe
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYA   52 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g   52 (183)
                      +|++++|+||||+|||||+++|++...+..|.|.+.+
T Consensus       107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~  143 (543)
T 3m6a_A          107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG  143 (543)
T ss_dssp             CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence            7999999999999999999999999988888887655

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=98.09  E-value=2.1e-06  Score=66.06  Aligned_cols=38  Identities=18%  Similarity=0.281  Sum_probs=32.9

Q ss_pred             ecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEe
Q 036195           14 DDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYA   52 (183)
Q Consensus        14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g   52 (183)
                      ..+|.+++|.|++||||||+++.|+..+.+ .+.+....
T Consensus        23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~~   60 (229)
T 4eaq_A           23 NAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTR   60 (229)
T ss_dssp             CCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEEC
T ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceeec
Confidence            348999999999999999999999999988 77776543

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=98.07  E-value=1.9e-06  Score=72.25  Aligned_cols=37  Identities=22%  Similarity=0.253  Sum_probs=31.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC------------CCCcEEEEEecCc
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMFS------------DMSHKFAIYAVSL   55 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~~------------p~~G~I~~~g~~~   55 (183)
                      .++|+|+||+|||||++.++|...            |.+|.+.++|.++
T Consensus       182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~  230 (439)
T 1mky_A          182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY  230 (439)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred             eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence            799999999999999999999854            6778888887643

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=98.07  E-value=6.7e-07  Score=76.61  Aligned_cols=69  Identities=9%  Similarity=-0.136  Sum_probs=56.3

Q ss_pred             CCCCCC-Chhhhhe------ecCch--hhc---ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEE
Q 036195          105 LPFSLE-SGKRNGV------LIGEE--EWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELI  172 (183)
Q Consensus       105 ~~~~~L-SgGqk~~------i~~~~--~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (183)
                      +|+..| ||||+|+      +..+|  ..+   ||....|+.++..+..++..+..  ..+|+++||+++.+ +.||+++
T Consensus       392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~~~vi~itH~~~~~-~~~d~~~  468 (517)
T 4ad8_A          392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQVLVVTHLAQIA-ARAHHHY  468 (517)
T ss_dssp             CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--HSEEEEECCCHHHH-HHSSEEE
T ss_pred             ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCHHHH-HhCCEEE
Confidence            567788 9999983      35666  665   88999999999999998887753  68899999999855 5699999


Q ss_pred             EEee
Q 036195          173 CIDV  176 (183)
Q Consensus       173 ~~~~  176 (183)
                      +++-
T Consensus       469 ~~~~  472 (517)
T 4ad8_A          469 KVEK  472 (517)
T ss_dssp             EEEC
T ss_pred             EEec
Confidence            9953

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=98.04  E-value=2.5e-06  Score=64.32  Aligned_cols=27  Identities=30%  Similarity=0.322  Sum_probs=22.2

Q ss_pred             ceecCccEEEEEcCCCCcHHHHHHHHhc
Q 036195           12 IEDDGVKIIGLYGVRGVGKSTLIKQLND   39 (183)
Q Consensus        12 l~i~~Ge~~~liGpNGaGKSTLl~~i~g   39 (183)
                      +++.+| +.+|+|||||||||++.+|.-
T Consensus        19 i~f~~~-~~~I~G~NgsGKStil~ai~~   45 (203)
T 3qks_A           19 VEFKEG-INLIIGQNGSGKSSLLDAILV   45 (203)
T ss_dssp             EECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEeCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence            345554 999999999999999998863

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=98.04  E-value=2.1e-06  Score=64.10  Aligned_cols=22  Identities=41%  Similarity=0.647  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      +++|+|+|||||||+.+.|+++
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~~   24 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFREL   24 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHT
T ss_pred             EEEEECCCCcCHHHHHHHHHHC
Confidence            6899999999999999999993

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=98.04  E-value=1.1e-06  Score=70.12  Aligned_cols=31  Identities=23%  Similarity=0.218  Sum_probs=27.9

Q ss_pred             ecCccEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 036195           14 DDGVKIIGLYGVRGVGKSTLIKQLNDMFSDM   44 (183)
Q Consensus        14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~   44 (183)
                      -.++.++||.||+|||||||.+.|++++.+.
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~   58 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEK   58 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence            3578899999999999999999999998763

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=98.03  E-value=2.2e-06  Score=70.42  Aligned_cols=40  Identities=20%  Similarity=0.287  Sum_probs=30.4

Q ss_pred             CccE-EEEEcCCCCcHHHHHHHHhcCCC-----------CCCcEEEEEecCc
Q 036195           16 GVKI-IGLYGVRGVGKSTLIKQLNDMFS-----------DMSHKFAIYAVSL   55 (183)
Q Consensus        16 ~Ge~-~~liGpNGaGKSTLl~~i~gl~~-----------p~~G~I~~~g~~~   55 (183)
                      .|-. ++|+|++|||||||++.++|...           |+.|.|.++|.++
T Consensus       177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v  228 (364)
T 2qtf_A          177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKI  228 (364)
T ss_dssp             --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEE
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEE
Confidence            3444 99999999999999999999875           5678888876543

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=97.99  E-value=2.9e-06  Score=70.42  Aligned_cols=41  Identities=22%  Similarity=0.285  Sum_probs=34.0

Q ss_pred             eecCccEEEEEcCCCCcHHHHHHHHhcC-----------CCCCCcEEEEEec
Q 036195           13 EDDGVKIIGLYGVRGVGKSTLIKQLNDM-----------FSDMSHKFAIYAV   53 (183)
Q Consensus        13 ~i~~Ge~~~liGpNGaGKSTLl~~i~gl-----------~~p~~G~I~~~g~   53 (183)
                      .+..|..++|+|+||+|||||++.|+|.           +.|..|.+.+.+.
T Consensus        18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~   69 (396)
T 2ohf_A           18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE   69 (396)
T ss_dssp             CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred             hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence            3678889999999999999999999998           6678888877653

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.99  E-value=3.2e-06  Score=63.42  Aligned_cols=29  Identities=34%  Similarity=0.473  Sum_probs=26.2

Q ss_pred             ecCccEEEEEcCCCCcHHHHHHHHhcCCC
Q 036195           14 DDGVKIIGLYGVRGVGKSTLIKQLNDMFS   42 (183)
Q Consensus        14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~~   42 (183)
                      ..+|.+++|+||+||||||+.+.|+..++
T Consensus         9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~   37 (204)
T 2qor_A            9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP   37 (204)
T ss_dssp             CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence            57899999999999999999999988763

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=97.97  E-value=2.6e-06  Score=69.76  Aligned_cols=40  Identities=23%  Similarity=0.176  Sum_probs=34.8

Q ss_pred             ecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEE-EEEec
Q 036195           14 DDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKF-AIYAV   53 (183)
Q Consensus        14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I-~~~g~   53 (183)
                      +.+|+++.|.||||+|||||+..++....+..|.+ ++++.
T Consensus        58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E   98 (356)
T 3hr8_A           58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAE   98 (356)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence            67999999999999999999999999988888876 45544

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=97.96  E-value=5.3e-06  Score=60.38  Aligned_cols=27  Identities=22%  Similarity=0.199  Sum_probs=23.4

Q ss_pred             cCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           15 DGVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .+|..++|+|++|+|||||++.+++..
T Consensus         2 ~~~~ki~ivG~~g~GKStLl~~l~~~~   28 (172)
T 2gj8_A            2 SHGMKVVIAGRPNAGKSSLLNALAGRE   28 (172)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            367889999999999999999999864

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=97.96  E-value=5.1e-06  Score=70.94  Aligned_cols=45  Identities=16%  Similarity=0.134  Sum_probs=36.5

Q ss_pred             ccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcc
Q 036195            8 HLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ   56 (183)
Q Consensus         8 ~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~   56 (183)
                      +++++  .+.+|  +.|+||||+|||||+++|++...  .+.+.+++.++.
T Consensus        55 ~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~  101 (499)
T 2dhr_A           55 RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFV  101 (499)
T ss_dssp             GTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGT
T ss_pred             hhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHH
Confidence            44444  46667  89999999999999999999874  788999887654

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.90  E-value=3.8e-06  Score=62.74  Aligned_cols=35  Identities=26%  Similarity=0.220  Sum_probs=27.9

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCc
Q 036195           17 VKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSL   55 (183)
Q Consensus        17 Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~   55 (183)
                      ..+++|+|++||||||+.+.|++.+    |...+++.++
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~~   52 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDAL   52 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGGG
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCcC
Confidence            4589999999999999999998875    4556655443

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=97.89  E-value=4.4e-06  Score=61.07  Aligned_cols=22  Identities=41%  Similarity=0.514  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      .++|+|++|+|||||++.+++-
T Consensus         9 ~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            9 EIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999984

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=97.89  E-value=9.3e-06  Score=58.45  Aligned_cols=23  Identities=39%  Similarity=0.447  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++|+|++|+|||||++.++|..
T Consensus         5 ~v~lvG~~gvGKStL~~~l~~~~   27 (165)
T 2wji_A            5 EIALIGNPNVGKSTIFNALTGEN   27 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999999964

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=97.87  E-value=1.4e-06  Score=78.55  Aligned_cols=83  Identities=14%  Similarity=-0.064  Sum_probs=69.1

Q ss_pred             HHHHHHcCCCCc-cCCCCCCCChhhhhee------cCchh--hc---ccccccCcccccccccceeecCcccccCCCCCC
Q 036195           91 LERIYVHGCPSL-RKLPFSLESGKRNGVL------IGEEE--WW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPS  158 (183)
Q Consensus        91 l~vLe~l~L~~L-~~~~~~~LSgGqk~~i------~~~~~--w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (183)
                      ++.+..+++..+ .++++.+|||||+|+|      ..++.  ++   ||...-|+.....+...+..++.+ ..+|+++|
T Consensus       360 l~~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~-G~TVIvVe  438 (842)
T 2vf7_A          360 LDVLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRG-GNSLFVVE  438 (842)
T ss_dssp             HHHHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTT-TCEEEEEC
T ss_pred             HHHHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHc-CCEEEEEc
Confidence            345778899876 7999999999999843      45653  44   889999999999999999888665 89999999


Q ss_pred             ceeeeeecccceEEEEe
Q 036195          159 YTYEATIRPRYELICID  175 (183)
Q Consensus       159 ~~~~~~~~~~~~~~~~~  175 (183)
                      ||++ +++.+|+|+.++
T Consensus       439 Hdl~-~l~~aD~ii~lg  454 (842)
T 2vf7_A          439 HDLD-VIRRADWLVDVG  454 (842)
T ss_dssp             CCHH-HHTTCSEEEEEC
T ss_pred             CCHH-HHHhCCEEEEeC
Confidence            9998 567899999985

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=97.86  E-value=7.2e-06  Score=60.11  Aligned_cols=25  Identities=32%  Similarity=0.434  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMFSD   43 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~~p   43 (183)
                      .++|+|++|+|||||++.+++...+
T Consensus         4 kv~ivG~~gvGKStLl~~l~~~~~~   28 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMKTKKS   28 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTCC---
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCc
Confidence            4789999999999999999997433

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.86  E-value=9e-06  Score=60.01  Aligned_cols=30  Identities=20%  Similarity=0.258  Sum_probs=25.7

Q ss_pred             cceecCccEEEEEcCCCCcHHHHHHHHhcC
Q 036195           11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      |++..+|.+++|+|++||||||+.+.|+..
T Consensus         4 ~~~~~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            4 SMEQPKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             --CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            456678899999999999999999999876

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=97.85  E-value=6.4e-06  Score=65.79  Aligned_cols=26  Identities=35%  Similarity=0.386  Sum_probs=23.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      ++.+++|+|++|||||||++.|.|..
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~~   32 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQK   32 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCCC
Confidence            44589999999999999999999974

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.84  E-value=9.6e-06  Score=59.47  Aligned_cols=25  Identities=28%  Similarity=0.355  Sum_probs=22.4

Q ss_pred             cCccEEEEEcCCCCcHHHHHHHHhc
Q 036195           15 DGVKIIGLYGVRGVGKSTLIKQLND   39 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl~~i~g   39 (183)
                      .+|.+++|+|++||||||+.+.|+.
T Consensus         2 ~~g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            2 DVGQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999999999984

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=97.82  E-value=1.3e-06  Score=79.39  Aligned_cols=81  Identities=10%  Similarity=-0.094  Sum_probs=66.3

Q ss_pred             HHHHcCCCCc-cCCCCCCCChhhhhee------cCc--hhhc---ccccccCcccccccccceeecCcccccCCCCCCce
Q 036195           93 RIYVHGCPSL-RKLPFSLESGKRNGVL------IGE--EEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYT  160 (183)
Q Consensus        93 vLe~l~L~~L-~~~~~~~LSgGqk~~i------~~~--~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (183)
                      .++.+|+..+ .++++.+|||||+|+|      ..+  +..+   ||....|+.....+...+..++. ...+|++++||
T Consensus       487 ~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~-~G~TVIvVeHd  565 (972)
T 2r6f_A          487 FLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRD-LGNTLIVVEHD  565 (972)
T ss_dssp             HHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHT-TTCEEEEECCC
T ss_pred             HhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHh-CCCEEEEEecC
Confidence            4677888866 7999999999999832      333  3554   89999999999999999888865 48999999999


Q ss_pred             eeeeecccceEEEEe
Q 036195          161 YEATIRPRYELICID  175 (183)
Q Consensus       161 ~~~~~~~~~~~~~~~  175 (183)
                      +++ ++.||+|+.++
T Consensus       566 l~~-i~~ADrIi~Lg  579 (972)
T 2r6f_A          566 EDT-MLAADYLIDIG  579 (972)
T ss_dssp             HHH-HHSCSEEEEEC
T ss_pred             HHH-HHhCCEEEEeC
Confidence            986 56799999885

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=97.81  E-value=1.1e-05  Score=61.78  Aligned_cols=28  Identities=25%  Similarity=0.240  Sum_probs=24.2

Q ss_pred             eecCccEEEEEcCCCCcHHHHHHHHhcC
Q 036195           13 EDDGVKIIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        13 ~i~~Ge~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      +-.+|.+++|+|++||||||+.+.|++.
T Consensus        12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~   39 (236)
T 1q3t_A           12 DKMKTIQIAIDGPASSGKSTVAKIIAKD   39 (236)
T ss_dssp             --CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred             cccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3578999999999999999999999963

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.78  E-value=7.9e-06  Score=68.56  Aligned_cols=41  Identities=29%  Similarity=0.330  Sum_probs=36.7

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcc
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ   56 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~   56 (183)
                      ++.+++++||||+||||++..|+..+.+..++|.+-+.+..
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~  136 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY  136 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence            57899999999999999999999999999999988776643

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=97.78  E-value=8.2e-06  Score=71.97  Aligned_cols=38  Identities=21%  Similarity=0.218  Sum_probs=30.8

Q ss_pred             cceecCccEEEEEcCCCCcHHHHHHHHhcCCCC--CCcEE
Q 036195           11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSD--MSHKF   48 (183)
Q Consensus        11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p--~~G~I   48 (183)
                      +++++++..++|+|+||+|||||++.|++...+  ..|+|
T Consensus         3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V   42 (665)
T 2dy1_A            3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV   42 (665)
T ss_dssp             ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG
T ss_pred             CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee
Confidence            567889999999999999999999999977654  56766

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=97.77  E-value=1.3e-05  Score=65.33  Aligned_cols=41  Identities=20%  Similarity=0.216  Sum_probs=28.8

Q ss_pred             ccccceecCccEEEEEcCCCCcHHHHHHHHhc--CCCCCCcEEE
Q 036195            8 HLRYIEDDGVKIIGLYGVRGVGKSTLIKQLND--MFSDMSHKFA   49 (183)
Q Consensus         8 ~l~~l~i~~Ge~~~liGpNGaGKSTLl~~i~g--l~~p~~G~I~   49 (183)
                      +|+++.+.-- .++|+|++|||||||++.|+|  ++++.+|.++
T Consensus        26 ~l~~i~~~lp-~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT   68 (360)
T 3t34_A           26 ALPTLWDSLP-AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT   68 (360)
T ss_dssp             CC----CCCC-EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCC
T ss_pred             ccccccccCC-EEEEECCCCCcHHHHHHHHhCCCcCCCCCCccc
Confidence            4554433222 899999999999999999999  5566666553

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.77  E-value=3.2e-06  Score=68.34  Aligned_cols=39  Identities=23%  Similarity=0.286  Sum_probs=32.2

Q ss_pred             ecCccE--EEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEe
Q 036195           14 DDGVKI--IGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYA   52 (183)
Q Consensus        14 i~~Ge~--~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g   52 (183)
                      ++.|++  +.+.||+|+||||+++++++.+.+..+.+.+.+
T Consensus        41 i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~   81 (340)
T 1sxj_C           41 VDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLE   81 (340)
T ss_dssp             HHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEE
T ss_pred             HhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEE
Confidence            678887  999999999999999999998877666544433

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.76  E-value=8.5e-06  Score=60.13  Aligned_cols=35  Identities=20%  Similarity=0.263  Sum_probs=27.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCCCCC---CcEEEEEe
Q 036195           18 KIIGLYGVRGVGKSTLIKQLNDMFSDM---SHKFAIYA   52 (183)
Q Consensus        18 e~~~liGpNGaGKSTLl~~i~gl~~p~---~G~I~~~g   52 (183)
                      .+++|+|++|||||||++.|.+.+++.   -|.|..++
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~   44 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH   44 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCC
Confidence            589999999999999999999886543   35555544

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=97.76  E-value=1.1e-05  Score=62.63  Aligned_cols=41  Identities=24%  Similarity=0.229  Sum_probs=33.3

Q ss_pred             eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCc
Q 036195           13 EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSL   55 (183)
Q Consensus        13 ~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~   55 (183)
                      ....+.++.|+|++||||||+.+.|+..+.  .+.+.+++..+
T Consensus        28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~   68 (253)
T 2p5t_B           28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSF   68 (253)
T ss_dssp             CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGG
T ss_pred             cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHH
Confidence            467788999999999999999999998764  35567776554

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=97.74  E-value=1.5e-05  Score=58.83  Aligned_cols=35  Identities=23%  Similarity=0.342  Sum_probs=20.4

Q ss_pred             cccccccccee--cCccEEEEEcCCCCcHHHHHHHHhc
Q 036195            4 LYRPHLRYIED--DGVKIIGLYGVRGVGKSTLIKQLND   39 (183)
Q Consensus         4 ~~~~~l~~l~i--~~Ge~~~liGpNGaGKSTLl~~i~g   39 (183)
                      ....+++++++  ++. .++++|++|+|||||++.+.+
T Consensus         9 ~~~~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~   45 (190)
T 1m2o_B            9 WFRDVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN   45 (190)
T ss_dssp             ---------------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence            34567776664  333 779999999999999999998

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=97.74  E-value=1.5e-05  Score=65.37  Aligned_cols=69  Identities=14%  Similarity=0.044  Sum_probs=55.0

Q ss_pred             CCCCCCChhhhhee------------cCc-hhhc---ccccccCcccccccccceeecCcccccCCCCCCceeeeeeccc
Q 036195          105 LPFSLESGKRNGVL------------IGE-EEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPR  168 (183)
Q Consensus       105 ~~~~~LSgGqk~~i------------~~~-~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (183)
                      .++..+||||++++            .++ |..+   |+....|+..+..+...+..+...  ..++++||+.+ +.+.+
T Consensus       276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~--~~vi~~th~~~-~~~~~  352 (371)
T 3auy_A          276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSI--PQMIIITHHRE-LEDVA  352 (371)
T ss_dssp             ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSC--SEEEEEESCGG-GGGGC
T ss_pred             cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccC--CeEEEEEChHH-HHhhC
Confidence            56678999999843            345 6665   889999999999998888776432  46889999986 67999


Q ss_pred             ceEEEEee
Q 036195          169 YELICIDV  176 (183)
Q Consensus       169 ~~~~~~~~  176 (183)
                      |+++.++-
T Consensus       353 d~~~~l~k  360 (371)
T 3auy_A          353 DVIINVKK  360 (371)
T ss_dssp             SEEEEEEE
T ss_pred             CEEEEEEe
Confidence            99999974

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=97.71  E-value=2.4e-05  Score=59.90  Aligned_cols=28  Identities=29%  Similarity=0.113  Sum_probs=24.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCc
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMFSDMSH   46 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~~p~~G   46 (183)
                      .++|+|++|+|||||++.|+|...+.++
T Consensus        31 ~i~lvG~~g~GKStlin~l~g~~~~~~~   58 (239)
T 3lxx_A           31 RIVLVGKTGAGKSATGNSILGRKVFHSG   58 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence            5899999999999999999998766555

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=97.70  E-value=1.4e-05  Score=65.84  Aligned_cols=38  Identities=18%  Similarity=-0.021  Sum_probs=33.5

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEec
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAV   53 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~   53 (183)
                      .+..+.|+||+||||||+++.+++...+..+.|.+.+.
T Consensus        34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~   71 (392)
T 4ag6_A           34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDP   71 (392)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred             ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeC
Confidence            57789999999999999999999988888888888653

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=97.70  E-value=5.9e-06  Score=63.83  Aligned_cols=24  Identities=25%  Similarity=0.436  Sum_probs=21.2

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHhcC
Q 036195           17 VKIIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        17 Ge~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      .-+++|.||+||||||+.+.|+..
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~~   32 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLARA   32 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            348999999999999999999843

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.68  E-value=2.3e-05  Score=56.45  Aligned_cols=23  Identities=30%  Similarity=0.238  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      +++|+|++||||||+.+.|+..+
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l   25 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKEL   25 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999998654

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=97.68  E-value=2.2e-05  Score=67.15  Aligned_cols=46  Identities=9%  Similarity=0.129  Sum_probs=38.8

Q ss_pred             ceecCccEEEEEcCCCCcHHHHHHHHhc--CCCCCCcEEEEEecCccc
Q 036195           12 IEDDGVKIIGLYGVRGVGKSTLIKQLND--MFSDMSHKFAIYAVSLQK   57 (183)
Q Consensus        12 l~i~~Ge~~~liGpNGaGKSTLl~~i~g--l~~p~~G~I~~~g~~~~~   57 (183)
                      +++.++..+.|.|++||||||+++.|..  +.+++.|++.+...|...
T Consensus       162 ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~  209 (512)
T 2ius_A          162 ADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM  209 (512)
T ss_dssp             EEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS
T ss_pred             EEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch
Confidence            5567889999999999999999999876  667788889888777653

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=97.67  E-value=1.7e-05  Score=64.74  Aligned_cols=39  Identities=18%  Similarity=0.148  Sum_probs=30.5

Q ss_pred             ecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEe
Q 036195           14 DDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYA   52 (183)
Q Consensus        14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g   52 (183)
                      +.+|+++.|.||||+|||||+..++.......|.+.+-+
T Consensus        58 l~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~   96 (349)
T 2zr9_A           58 LPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID   96 (349)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence            679999999999999999998777765544556655543

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=97.64  E-value=2.4e-05  Score=58.12  Aligned_cols=46  Identities=22%  Similarity=0.373  Sum_probs=32.6

Q ss_pred             ccccccce--ecCccEEEEEcCCCCcHHHHHHHHhcC--------CCCCCcEEEEEe
Q 036195            6 RPHLRYIE--DDGVKIIGLYGVRGVGKSTLIKQLNDM--------FSDMSHKFAIYA   52 (183)
Q Consensus         6 ~~~l~~l~--i~~Ge~~~liGpNGaGKSTLl~~i~gl--------~~p~~G~I~~~g   52 (183)
                      ++++++++  .++. .++++|++|+|||||++.+.+-        ..++.+.+.+++
T Consensus        13 ~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~   68 (198)
T 1f6b_A           13 SSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAG   68 (198)
T ss_dssp             CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETT
T ss_pred             HHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECC
Confidence            45666554  4555 4789999999999999999872        233456666654

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.61  E-value=3.9e-05  Score=55.75  Aligned_cols=26  Identities=27%  Similarity=0.478  Sum_probs=23.3

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHhcCCC
Q 036195           17 VKIIGLYGVRGVGKSTLIKQLNDMFS   42 (183)
Q Consensus        17 Ge~~~liGpNGaGKSTLl~~i~gl~~   42 (183)
                      +.++.|+|++||||||+.+.|+..+.
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l~   28 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            56899999999999999999998763

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=97.60  E-value=4e-05  Score=57.79  Aligned_cols=32  Identities=34%  Similarity=0.315  Sum_probs=25.7

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEe
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYA   52 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g   52 (183)
                      .+-+++|.|++||||||+.+.|+.+     |...++.
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~l-----g~~~id~   34 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFADL-----GINVIDA   34 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHT-----TCEEEEH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHc-----CCEEEEc
Confidence            3568999999999999999999983     4445543

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=97.59  E-value=2e-05  Score=64.39  Aligned_cols=36  Identities=25%  Similarity=0.333  Sum_probs=29.6

Q ss_pred             ccccccc--eecCccE--EEEEcCCCCcHHHHHHHHhcCC
Q 036195            6 RPHLRYI--EDDGVKI--IGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~--~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      ..+++.+  .+++|++  ++|+|++||||||+.++|++.+
T Consensus         9 ~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l   48 (359)
T 2ga8_A            9 DDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII   48 (359)
T ss_dssp             HHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence            3455544  4788988  9999999999999999999865

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.58  E-value=4.7e-05  Score=58.82  Aligned_cols=42  Identities=21%  Similarity=0.189  Sum_probs=28.6

Q ss_pred             ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCc
Q 036195           12 IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSL   55 (183)
Q Consensus        12 l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~   55 (183)
                      +......-+.|+||+|+|||||+++|++.....  -+.+++.++
T Consensus        40 ~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~~   81 (257)
T 1lv7_A           40 LGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDF   81 (257)
T ss_dssp             ---CCCCEEEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCSS
T ss_pred             cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHHH
Confidence            333333448899999999999999999976422  356665544

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=97.57  E-value=5.3e-05  Score=62.13  Aligned_cols=36  Identities=25%  Similarity=0.284  Sum_probs=30.2

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHhc-----------CCCCCCcEEEEEe
Q 036195           17 VKIIGLYGVRGVGKSTLIKQLND-----------MFSDMSHKFAIYA   52 (183)
Q Consensus        17 Ge~~~liGpNGaGKSTLl~~i~g-----------l~~p~~G~I~~~g   52 (183)
                      |-.++|+|.+|+|||||++.+++           -+.|+.|.+.+.+
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~   48 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD   48 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence            34689999999999999999998           3467788887765

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.57  E-value=4.4e-05  Score=56.07  Aligned_cols=27  Identities=26%  Similarity=0.292  Sum_probs=23.5

Q ss_pred             cCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           15 DGVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++.++.|+|++||||||+.+.|+..+
T Consensus         3 ~~~~~I~l~G~~GsGKST~~~~L~~~l   29 (193)
T 2rhm_A            3 QTPALIIVTGHPATGKTTLSQALATGL   29 (193)
T ss_dssp             SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence            467899999999999999999997643

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.56  E-value=4.5e-05  Score=55.81  Aligned_cols=25  Identities=32%  Similarity=0.411  Sum_probs=22.3

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           17 VKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        17 Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      |.++.|.|++||||||+.+.|+-.+
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l   27 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNL   27 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            6689999999999999999998744

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.56  E-value=4.2e-05  Score=54.90  Aligned_cols=19  Identities=42%  Similarity=0.618  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCcHHHHHHHH
Q 036195           19 IIGLYGVRGVGKSTLIKQL   37 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i   37 (183)
                      +++|.||+||||||+.+.|
T Consensus         3 ~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            7899999999999999998

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.56  E-value=5.4e-05  Score=56.04  Aligned_cols=33  Identities=30%  Similarity=0.267  Sum_probs=27.1

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecC
Q 036195           17 VKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVS   54 (183)
Q Consensus        17 Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~   54 (183)
                      ..+++|+|++||||||+.+.|+..     |...++..+
T Consensus         8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~d~   40 (203)
T 1uf9_A            8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDLDA   40 (203)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEcccH
Confidence            458999999999999999999985     666666543

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=97.55  E-value=9.4e-06  Score=60.82  Aligned_cols=30  Identities=33%  Similarity=0.634  Sum_probs=24.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCcEE
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMFSDMSHKF   48 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~~p~~G~I   48 (183)
                      +++|.|++||||||+++.|+..+.+....+
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v   31 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSV   31 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHHEEEEEE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence            689999999999999999988775433333

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=97.55  E-value=4.1e-05  Score=59.56  Aligned_cols=24  Identities=21%  Similarity=0.271  Sum_probs=21.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           18 KIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        18 e~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++.|+||+|||||||.+.|+.-+
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~   25 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQET   25 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcC
Confidence            368999999999999999998754

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.54  E-value=3e-05  Score=61.66  Aligned_cols=42  Identities=21%  Similarity=0.224  Sum_probs=33.7

Q ss_pred             ccceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEec
Q 036195           10 RYIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAV   53 (183)
Q Consensus        10 ~~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~   53 (183)
                      .++.+.++..+.|.||+|+|||||++++++...  .+.+.+++.
T Consensus        42 ~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~~~   83 (301)
T 3cf0_A           42 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGP   83 (301)
T ss_dssp             HHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CEEEEECHH
T ss_pred             HHcCCCCCceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEEhH
Confidence            345578899999999999999999999999763  455666543

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.54  E-value=3.6e-05  Score=56.20  Aligned_cols=28  Identities=43%  Similarity=0.341  Sum_probs=24.0

Q ss_pred             eecCccEEEEEcCCCCcHHHHHHHHhcC
Q 036195           13 EDDGVKIIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        13 ~i~~Ge~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      .+..+.++.|+|++||||||+.+.++..
T Consensus         7 ~~~~~~~i~i~G~~GsGKst~~~~l~~~   34 (180)
T 3iij_A            7 EFMLLPNILLTGTPGVGKTTLGKELASK   34 (180)
T ss_dssp             TTCCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             ccccCCeEEEEeCCCCCHHHHHHHHHHH
Confidence            3456788999999999999999999844

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=97.52  E-value=4.9e-05  Score=62.90  Aligned_cols=30  Identities=10%  Similarity=0.015  Sum_probs=27.7

Q ss_pred             ceecCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           12 IEDDGVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        12 l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      +.+.+|+.++|+||+|+|||||++.|++.+
T Consensus       169 ~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i  198 (422)
T 3ice_A          169 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSI  198 (422)
T ss_dssp             SCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred             eeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence            458999999999999999999999999875

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.52  E-value=3.9e-05  Score=62.79  Aligned_cols=28  Identities=32%  Similarity=0.240  Sum_probs=20.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCCCCCcE
Q 036195           20 IGLYGVRGVGKSTLIKQLNDMFSDMSHK   47 (183)
Q Consensus        20 ~~liGpNGaGKSTLl~~i~gl~~p~~G~   47 (183)
                      ++|+|++|+|||||++.|.+...+..+.
T Consensus        40 I~vvG~~g~GKSTLln~L~~~~~~~~~~   67 (361)
T 2qag_A           40 LMVVGESGLGKSTLINSLFLTDLYPERV   67 (361)
T ss_dssp             EEECCCTTSCHHHHHHHHTTCCC-----
T ss_pred             EEEEcCCCCCHHHHHHHHhCCCCCCCCc
Confidence            5899999999999999998875544443

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.51  E-value=5.4e-05  Score=55.98  Aligned_cols=23  Identities=30%  Similarity=0.626  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      +++|+|++||||||+.+.|+..+
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l   24 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKL   24 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHHhc
Confidence            68999999999999999999843

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.50  E-value=4.7e-05  Score=55.38  Aligned_cols=23  Identities=39%  Similarity=0.482  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      ++.|+|++||||||+.+.|+..+
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l   28 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDL   28 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHc
Confidence            58899999999999999998754

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.48  E-value=5.8e-05  Score=56.24  Aligned_cols=21  Identities=48%  Similarity=0.594  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 036195           20 IGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        20 ~~liGpNGaGKSTLl~~i~gl   40 (183)
                      +.|+||+|||||||++.|..-
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            679999999999999988644

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=97.48  E-value=5.8e-05  Score=59.03  Aligned_cols=24  Identities=29%  Similarity=0.498  Sum_probs=21.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMFS   42 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~~   42 (183)
                      .++|+|++|||||||++.++|...
T Consensus         5 ~i~lvG~~g~GKTTL~n~l~g~~~   28 (271)
T 3k53_A            5 TVALVGNPNVGKTTIFNALTGLRQ   28 (271)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc
Confidence            589999999999999999999853

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=97.46  E-value=5.8e-05  Score=59.66  Aligned_cols=34  Identities=26%  Similarity=0.351  Sum_probs=29.3

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEE
Q 036195           17 VKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAI   50 (183)
Q Consensus        17 Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~   50 (183)
                      ...+.|+||+|+||||+.+.|++...+..+.+..
T Consensus        47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~   80 (311)
T 4fcw_A           47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIR   80 (311)
T ss_dssp             SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEE
Confidence            3689999999999999999999998877776544

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.45  E-value=7.5e-05  Score=54.10  Aligned_cols=22  Identities=41%  Similarity=0.492  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhc
Q 036195           18 KIIGLYGVRGVGKSTLIKQLND   39 (183)
Q Consensus        18 e~~~liGpNGaGKSTLl~~i~g   39 (183)
                      .++.|.|++||||||+.+.|+.
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4789999999999999999987

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.45  E-value=8.6e-05  Score=55.02  Aligned_cols=27  Identities=19%  Similarity=0.223  Sum_probs=24.5

Q ss_pred             cCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           15 DGVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .+|-+++|.|+.||||||+.+.|+..+
T Consensus         2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            2 SRGALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            367899999999999999999999876

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.43  E-value=8.4e-05  Score=54.34  Aligned_cols=26  Identities=31%  Similarity=0.436  Sum_probs=22.0

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .+.++.|+|+.||||||+.+.|+..+
T Consensus         4 ~~~~i~l~G~~GsGKst~a~~La~~l   29 (185)
T 3trf_A            4 NLTNIYLIGLMGAGKTSVGSQLAKLT   29 (185)
T ss_dssp             -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            35689999999999999999997643

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.42  E-value=9.4e-05  Score=54.40  Aligned_cols=27  Identities=26%  Similarity=0.367  Sum_probs=23.7

Q ss_pred             cCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           15 DGVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++-+++|+|+.||||||+.+.|+..+
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~La~~l   33 (196)
T 2c95_A            7 KKTNIIFVVGGPGSGKGTQCEKIVQKY   33 (196)
T ss_dssp             TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            467899999999999999999998643

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.42  E-value=5e-05  Score=55.75  Aligned_cols=27  Identities=19%  Similarity=0.262  Sum_probs=23.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 036195           18 KIIGLYGVRGVGKSTLIKQLNDMFSDM   44 (183)
Q Consensus        18 e~~~liGpNGaGKSTLl~~i~gl~~p~   44 (183)
                      .+++|+|++|||||||+..|+..++..
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~   31 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAAAVRE   31 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence            378999999999999999999876543

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.41  E-value=8.1e-05  Score=58.98  Aligned_cols=37  Identities=19%  Similarity=0.171  Sum_probs=29.0

Q ss_pred             ecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEe
Q 036195           14 DDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYA   52 (183)
Q Consensus        14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g   52 (183)
                      ...+.++.|.||+||||||+.+.|+.-+.  .|.+.++.
T Consensus        30 ~~~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~   66 (287)
T 1gvn_B           30 VESPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN   66 (287)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence            45678999999999999999999986542  35566654

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=97.41  E-value=5.1e-05  Score=63.85  Aligned_cols=42  Identities=14%  Similarity=0.255  Sum_probs=35.0

Q ss_pred             ecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCc-EEEEEecCc
Q 036195           14 DDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSH-KFAIYAVSL   55 (183)
Q Consensus        14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G-~I~~~g~~~   55 (183)
                      +.+|+++.|.|++|+|||||+..+++...+..| .|.+.+.+.
T Consensus       200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~  242 (454)
T 2r6a_A          200 FQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEM  242 (454)
T ss_dssp             BCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSS
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence            899999999999999999999999988766555 676665543

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.40  E-value=0.0001  Score=54.85  Aligned_cols=34  Identities=24%  Similarity=0.322  Sum_probs=26.6

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEE
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAI   50 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~   50 (183)
                      +|-+++|.|+.||||||+.+.|+.-+.. .|.+..
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~-~g~~~~   36 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDWIEL-KRDVYL   36 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHTT-TSCEEE
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHhh-cCCEEE
Confidence            4678999999999999999999876543 234433

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=97.39  E-value=0.00012  Score=53.58  Aligned_cols=28  Identities=25%  Similarity=0.284  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc-C----CCCCCc
Q 036195           19 IIGLYGVRGVGKSTLIKQLND-M----FSDMSH   46 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~g-l----~~p~~G   46 (183)
                      .++|+|++|+|||||++.+.+ .    ..|+.+
T Consensus        22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~   54 (184)
T 3ihw_A           22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG   54 (184)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc
Confidence            578999999999999965554 3    456655

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.38  E-value=0.00011  Score=54.83  Aligned_cols=26  Identities=35%  Similarity=0.302  Sum_probs=23.3

Q ss_pred             cCccEEEEEcCCCCcHHHHHHHHhcC
Q 036195           15 DGVKIIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      .+|-+++|.|+.||||||+.+.|+..
T Consensus         8 ~~~~~I~l~G~~GsGKST~~~~L~~~   33 (212)
T 2wwf_A            8 KKGKFIVFEGLDRSGKSTQSKLLVEY   33 (212)
T ss_dssp             BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            46889999999999999999999864

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.37  E-value=0.00011  Score=53.82  Aligned_cols=25  Identities=20%  Similarity=0.267  Sum_probs=21.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHhcC
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      ++.+++|.|++||||||+.+.|+..
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~~~   26 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIVEK   26 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHH
Confidence            3568999999999999999998753

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=97.35  E-value=0.0001  Score=54.69  Aligned_cols=23  Identities=22%  Similarity=0.455  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      +++|.|++||||||+.+.|+..+
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~l   26 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAAL   26 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            89999999999999999998854

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.35  E-value=0.00012  Score=54.52  Aligned_cols=27  Identities=33%  Similarity=0.340  Sum_probs=23.5

Q ss_pred             ecCccEEEEEcCCCCcHHHHHHHHhcC
Q 036195           14 DDGVKIIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        14 i~~Ge~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      ..+|-+++|.|+.||||||+.+.|+..
T Consensus         6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~   32 (215)
T 1nn5_A            6 ARRGALIVLEGVDRAGKSTQSRKLVEA   32 (215)
T ss_dssp             -CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            356889999999999999999999854

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.32  E-value=0.00012  Score=53.43  Aligned_cols=24  Identities=33%  Similarity=0.614  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMFS   42 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~~   42 (183)
                      ++.|.|+.||||||+.+.|+.-+.
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l~   26 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            688999999999999999987653

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=97.31  E-value=8.7e-05  Score=56.75  Aligned_cols=25  Identities=24%  Similarity=0.348  Sum_probs=21.9

Q ss_pred             ecCccEEEEEcCCCCcHHHHHHHHh
Q 036195           14 DDGVKIIGLYGVRGVGKSTLIKQLN   38 (183)
Q Consensus        14 i~~Ge~~~liGpNGaGKSTLl~~i~   38 (183)
                      +.+|+.+.+.||+||||||++..+.
T Consensus        73 i~~g~~~~i~g~TGsGKTt~~~~~~   97 (235)
T 3llm_A           73 ISQNSVVIIRGATGCGKTTQVPQFI   97 (235)
T ss_dssp             HHHCSEEEEECCTTSSHHHHHHHHH
T ss_pred             HhcCCEEEEEeCCCCCcHHhHHHHH
Confidence            5679999999999999999887664

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=97.29  E-value=0.00018  Score=58.38  Aligned_cols=37  Identities=24%  Similarity=0.408  Sum_probs=29.4

Q ss_pred             cCcc--EEEEEcCCCCcHHHHHHHHhcCCCCCC--cEEEEE
Q 036195           15 DGVK--IIGLYGVRGVGKSTLIKQLNDMFSDMS--HKFAIY   51 (183)
Q Consensus        15 ~~Ge--~~~liGpNGaGKSTLl~~i~gl~~p~~--G~I~~~   51 (183)
                      ..+.  .+.|.||+|+|||||++.+++...+..  ..++++
T Consensus        40 ~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~   80 (389)
T 1fnn_A           40 PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN   80 (389)
T ss_dssp             TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred             CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence            4556  899999999999999999999887653  344444

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=97.26  E-value=0.00016  Score=52.93  Aligned_cols=25  Identities=24%  Similarity=0.258  Sum_probs=22.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCCC
Q 036195           18 KIIGLYGVRGVGKSTLIKQLNDMFS   42 (183)
Q Consensus        18 e~~~liGpNGaGKSTLl~~i~gl~~   42 (183)
                      =.++|+|+.|+|||||++.+.+-..
T Consensus        49 ~~i~vvG~~g~GKSsll~~l~~~~~   73 (193)
T 2ged_A           49 PSIIIAGPQNSGKTSLLTLLTTDSV   73 (193)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3789999999999999999998753

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=97.26  E-value=0.00016  Score=56.92  Aligned_cols=23  Identities=26%  Similarity=0.349  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++|+|++|+|||||++.++|..
T Consensus         5 kI~lvG~~nvGKSTL~n~L~g~~   27 (272)
T 3b1v_A            5 EIALIGNPNSGKTSLFNLITGHN   27 (272)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            58999999999999999999964

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=97.25  E-value=0.00028  Score=57.20  Aligned_cols=27  Identities=22%  Similarity=0.252  Sum_probs=25.1

Q ss_pred             ecCccEEEEEcCCCCcHHHHHHHHhcC
Q 036195           14 DDGVKIIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        14 i~~Ge~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      +++|+++.|.||+|+|||||+..++..
T Consensus       119 l~~G~i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          119 IESMAITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             BCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999999999988874

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=97.25  E-value=9.9e-05  Score=59.59  Aligned_cols=38  Identities=21%  Similarity=0.332  Sum_probs=30.0

Q ss_pred             cCccEEEEEcCCCCcHHHHHHHHhcCCCCC----CcEEEEEe
Q 036195           15 DGVKIIGLYGVRGVGKSTLIKQLNDMFSDM----SHKFAIYA   52 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~----~G~I~~~g   52 (183)
                      ..+..+.|.||+|+|||||++.+++...+.    ...++++.
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~   84 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINT   84 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEC
Confidence            457899999999999999999999887553    33455554

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=97.24  E-value=0.00018  Score=52.92  Aligned_cols=28  Identities=32%  Similarity=0.377  Sum_probs=24.0

Q ss_pred             ecCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           14 DDGVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      +..+-+++|+|+.||||||+.+.|+..+
T Consensus         9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l   36 (199)
T 2bwj_A            9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY   36 (199)
T ss_dssp             HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            3456799999999999999999998754

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=97.23  E-value=0.00012  Score=53.29  Aligned_cols=26  Identities=31%  Similarity=0.413  Sum_probs=18.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      ++.++.|.|++||||||+.+.|+..+
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~l   29 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHERL   29 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHHS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            56789999999999999999998543

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=97.23  E-value=0.00014  Score=52.99  Aligned_cols=30  Identities=33%  Similarity=0.328  Sum_probs=24.5

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHhcCC----CCCCc
Q 036195           17 VKIIGLYGVRGVGKSTLIKQLNDMF----SDMSH   46 (183)
Q Consensus        17 Ge~~~liGpNGaGKSTLl~~i~gl~----~p~~G   46 (183)
                      .-.++|+|++|+|||||++.+.+-.    .|+.|
T Consensus        16 ~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g   49 (181)
T 1fzq_A           16 EVRILLLGLDNAGKTTLLKQLASEDISHITPTQG   49 (181)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETT
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCC
Confidence            3468999999999999999999863    45555

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.22  E-value=0.00021  Score=53.85  Aligned_cols=27  Identities=30%  Similarity=0.377  Sum_probs=22.9

Q ss_pred             cCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           15 DGVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .+|-++.|+|+.||||||+.+.|+..+
T Consensus         2 ~~~~~I~l~G~~GsGKsT~a~~La~~l   28 (220)
T 1aky_A            2 SESIRMVLIGPPGAGKGTQAPNLQERF   28 (220)
T ss_dssp             -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            356789999999999999999998654

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.22  E-value=7.2e-05  Score=54.14  Aligned_cols=34  Identities=21%  Similarity=0.283  Sum_probs=25.0

Q ss_pred             cccccccee-cCccEEEEEcCCCCcHHHHHHHHhc
Q 036195            6 RPHLRYIED-DGVKIIGLYGVRGVGKSTLIKQLND   39 (183)
Q Consensus         6 ~~~l~~l~i-~~Ge~~~liGpNGaGKSTLl~~i~g   39 (183)
                      +.+++++-- ++.-.++|+|++|+|||||++.+.+
T Consensus         6 ~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A            6 SSMFDKLWGSNKELRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             HHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             HHHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhc
Confidence            334444322 4555899999999999999999874

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=97.21  E-value=0.00018  Score=52.94  Aligned_cols=37  Identities=19%  Similarity=0.126  Sum_probs=28.5

Q ss_pred             ccccccccceecCccEEEEEcCCCCcHHHHHHHHhcC
Q 036195            4 LYRPHLRYIEDDGVKIIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus         4 ~~~~~l~~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      +...+++.+.-.+.=.++|+|+.|+|||||++.+.+-
T Consensus        16 ~~~~~~~~~~~~~~~ki~v~G~~~vGKSsLi~~l~~~   52 (192)
T 2b6h_A           16 PRGSLFSRIFGKKQMRILMVGLDAAGKTTILYKLKLG   52 (192)
T ss_dssp             -CCCGGGGTTTTSCEEEEEEESTTSSHHHHHHHHCSS
T ss_pred             hHHHHHHHhccCCccEEEEECCCCCCHHHHHHHHHhC
Confidence            4556666665555667999999999999999999754

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=97.21  E-value=0.00016  Score=51.39  Aligned_cols=23  Identities=35%  Similarity=0.482  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         4 ki~~vG~~~~GKSsli~~l~~~~   26 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGGVE   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCC-
T ss_pred             EEEEECCCCCCHHHHHHHHcCcc
Confidence            47899999999999999998764

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=97.21  E-value=0.00019  Score=51.27  Aligned_cols=23  Identities=30%  Similarity=0.385  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         6 ki~i~G~~~vGKSsl~~~l~~~~   28 (175)
T 2nzj_A            6 RVVLLGDPGVGKTSLASLFAGKQ   28 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC-
T ss_pred             EEEEECCCCccHHHHHHHHhcCC
Confidence            47899999999999999998864

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=97.21  E-value=0.00018  Score=51.02  Aligned_cols=23  Identities=26%  Similarity=0.358  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++++|+.|+|||||++.+.+-.
T Consensus         7 ~i~v~G~~~~GKssl~~~l~~~~   29 (168)
T 1z2a_A            7 KMVVVGNGAVGKSSMIQRYCKGI   29 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            47899999999999999998753

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.20  E-value=0.0002  Score=53.63  Aligned_cols=22  Identities=36%  Similarity=0.477  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      .++|+||.||||||+.+.|+.-
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEK   23 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999653

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=97.20  E-value=0.00017  Score=58.77  Aligned_cols=27  Identities=33%  Similarity=0.369  Sum_probs=23.6

Q ss_pred             cCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           15 DGVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      ...-.++++|+||+|||||++.++|..
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~  191 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAK  191 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            345589999999999999999999875

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=97.20  E-value=0.00021  Score=50.82  Aligned_cols=22  Identities=32%  Similarity=0.616  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      .++++|+.|+|||||++.+.+-
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            5 RVAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999999874

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=97.19  E-value=0.00021  Score=54.14  Aligned_cols=27  Identities=22%  Similarity=0.362  Sum_probs=22.1

Q ss_pred             cCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           15 DGVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++-++.|+|+.||||||+.+.|+.-+
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a~~La~~l   31 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVSSRITTHF   31 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            345789999999999999999998543

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=97.19  E-value=0.00017  Score=53.43  Aligned_cols=32  Identities=25%  Similarity=0.282  Sum_probs=26.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEE
Q 036195           18 KIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFA   49 (183)
Q Consensus        18 e~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~   49 (183)
                      ..+.|.||+|+|||||++.++.........+.
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~   86 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSL   86 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence            68899999999999999999987755444444

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=97.19  E-value=0.0002  Score=50.50  Aligned_cols=23  Identities=30%  Similarity=0.358  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++++|+.|+|||||++.+.+-.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~   25 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKKR   25 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998864

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=97.18  E-value=0.00019  Score=50.58  Aligned_cols=23  Identities=39%  Similarity=0.439  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++++|+.|+|||||++.+.+-.
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~~   27 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQNH   27 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            47899999999999999998753

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=97.18  E-value=0.00023  Score=52.13  Aligned_cols=23  Identities=35%  Similarity=0.650  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      +++|.|+.||||||+.+.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l   24 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYL   24 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            58999999999999999998644

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=97.18  E-value=0.00021  Score=50.48  Aligned_cols=23  Identities=35%  Similarity=0.366  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++++|+.|+|||||++.+.+-.
T Consensus         5 ~i~v~G~~~~GKSsli~~l~~~~   27 (167)
T 1kao_A            5 KVVVLGSGGVGKSALTVQFVTGT   27 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            47899999999999999987643

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=97.17  E-value=0.00025  Score=51.06  Aligned_cols=23  Identities=35%  Similarity=0.469  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcC
Q 036195           18 KIIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        18 e~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      ++++|+|+.||||||+.+.|+..
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~~   30 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGLA   30 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            68999999999999999999764

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=97.16  E-value=0.00022  Score=50.67  Aligned_cols=23  Identities=30%  Similarity=0.436  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++++|+.|+|||||++.+.+-.
T Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            8 KVCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            47899999999999999998865

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=97.16  E-value=0.0002  Score=51.59  Aligned_cols=24  Identities=29%  Similarity=0.455  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           18 KIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        18 e~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .+++|.|+.||||||+.+.|+..+
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~l   26 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARAL   26 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHh
Confidence            368999999999999999998643

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=97.15  E-value=0.00023  Score=50.59  Aligned_cols=23  Identities=39%  Similarity=0.496  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++|+|+.|+|||||++.+.+..
T Consensus         4 ki~ivG~~~~GKSsli~~l~~~~   26 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFGGLQ   26 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCC-
T ss_pred             EEEEECCCCCCHHHHHHHHHhcc
Confidence            37899999999999999998754

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=97.15  E-value=0.00026  Score=50.78  Aligned_cols=23  Identities=35%  Similarity=0.268  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      +++|.|+.||||||+.+.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l   24 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSL   24 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            58899999999999999998743

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=97.15  E-value=0.00022  Score=50.41  Aligned_cols=23  Identities=35%  Similarity=0.284  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++++|+.|+|||||++.+.+-.
T Consensus         6 ~i~v~G~~~~GKssl~~~l~~~~   28 (168)
T 1u8z_A            6 KVIMVGSGGVGKSALTLQFMYDE   28 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            47899999999999999998753

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.15  E-value=0.00028  Score=52.29  Aligned_cols=27  Identities=33%  Similarity=0.459  Sum_probs=22.6

Q ss_pred             cCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           15 DGVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      ....+++|.|+.||||||+.+.|+.-+
T Consensus        13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~   39 (203)
T 1ukz_A           13 DQVSVIFVLGGPGAGKGTQCEKLVKDY   39 (203)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            345689999999999999999988543

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=97.15  E-value=0.00023  Score=50.65  Aligned_cols=23  Identities=26%  Similarity=0.313  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++++|+.|+|||||++.+.+-.
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~~   30 (170)
T 1z08_A            8 KVVLLGEGCVGKTSLVLRYCENK   30 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            57899999999999999998653

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.15  E-value=0.00025  Score=53.22  Aligned_cols=23  Identities=26%  Similarity=0.450  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++|+||.||||||+.+.|+.-+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999996543

>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*

Probab=97.15  E-value=2.1e-05  Score=58.00  Aligned_cols=74  Identities=8%  Similarity=0.021  Sum_probs=55.6

Q ss_pred             CccCCCCCCCChhhhhe--e----cC----chhhc---ccccccCcccccccccceeecCcccccCCCCCCceeeeeecc
Q 036195          101 SLRKLPFSLESGKRNGV--L----IG----EEEWW---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRP  167 (183)
Q Consensus       101 ~L~~~~~~~LSgGqk~~--i----~~----~~~w~---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (183)
                      .....++..|||||+++  +    +.    .+.++   |+....|+..+..+..++.....+  ..++++||+.. +++.
T Consensus        56 ~~~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~--~~~ivith~~~-~~~~  132 (173)
T 3kta_B           56 GKDVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKE--SQFIVITLRDV-MMAN  132 (173)
T ss_dssp             SSSCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTT--SEEEEECSCHH-HHTT
T ss_pred             CccccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccC--CEEEEEEecHH-HHHh
Confidence            34567788999999982  2    22    23554   889999999999999888776544  45778888864 6799


Q ss_pred             cceEEEEeeC
Q 036195          168 RYELICIDVD  177 (183)
Q Consensus       168 ~~~~~~~~~~  177 (183)
                      +|++|++...
T Consensus       133 ad~i~~v~~~  142 (173)
T 3kta_B          133 ADKIIGVSMR  142 (173)
T ss_dssp             CSEEEEEEEE
T ss_pred             CCEEEEEEec
Confidence            9999999864

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=97.15  E-value=6.9e-05  Score=63.37  Aligned_cols=43  Identities=26%  Similarity=0.357  Sum_probs=32.6

Q ss_pred             ccccce-ecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEE
Q 036195            8 HLRYIE-DDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAI   50 (183)
Q Consensus         8 ~l~~l~-i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~   50 (183)
                      +++.|. +-+|+..+|+||+|+|||||++.|+.-.....+.+.+
T Consensus       141 ~ID~L~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V  184 (473)
T 1sky_E          141 VVDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISV  184 (473)
T ss_dssp             HHHHHSCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEE
T ss_pred             HHHHHhhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEEE
Confidence            344443 7889999999999999999999988765544444544

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=97.15  E-value=0.00028  Score=51.52  Aligned_cols=24  Identities=21%  Similarity=0.243  Sum_probs=21.3

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHhcC
Q 036195           17 VKIIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        17 Ge~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      ..+++|.|+.||||||+.+.|+..
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~~   29 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            458999999999999999999764

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.14  E-value=0.0003  Score=52.23  Aligned_cols=27  Identities=26%  Similarity=0.311  Sum_probs=23.0

Q ss_pred             cCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           15 DGVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      ..+-+++|+|+.||||||+.+.|+..+
T Consensus        18 ~~~~~I~l~G~~GsGKST~a~~La~~l   44 (201)
T 2cdn_A           18 GSHMRVLLLGPPGAGKGTQAVKLAEKL   44 (201)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            455689999999999999999998643

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=97.14  E-value=0.00022  Score=51.23  Aligned_cols=23  Identities=35%  Similarity=0.488  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        11 ~i~v~G~~~~GKssl~~~l~~~~   33 (181)
T 3tw8_B           11 KLLIIGDSGVGKSSLLLRFADNT   33 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHCSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999998754

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=97.14  E-value=0.00022  Score=50.67  Aligned_cols=23  Identities=39%  Similarity=0.416  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++++|+.|+|||||++.+.+-.
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1g16_A            5 KILLIGDSGVGKSCLLVRFVEDK   27 (170)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC
Confidence            47899999999999999998764

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=97.13  E-value=0.00024  Score=50.96  Aligned_cols=23  Identities=35%  Similarity=0.404  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++++|+.|+|||||++.+.+-.
T Consensus         9 ~i~v~G~~~~GKSsli~~l~~~~   31 (177)
T 1wms_A            9 KVILLGDGGVGKSSLMNRYVTNK   31 (177)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            47899999999999999998653

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=97.13  E-value=0.00024  Score=51.04  Aligned_cols=23  Identities=26%  Similarity=0.405  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++++|+.|+|||||++.+.+-.
T Consensus        10 ~i~v~G~~~~GKSsli~~l~~~~   32 (182)
T 1ky3_A           10 KVIILGDSGVGKTSLMHRYVNDK   32 (182)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            58899999999999999988754

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=97.12  E-value=0.00022  Score=52.11  Aligned_cols=25  Identities=36%  Similarity=0.426  Sum_probs=21.5

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           17 VKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        17 Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      --.++|+|+.|+|||||++.+.+-.
T Consensus        23 ~~~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 1svi_A           23 LPEIALAGRSNVGKSSFINSLINRK   47 (195)
T ss_dssp             CCEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3478999999999999999998763

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=97.12  E-value=0.00024  Score=53.65  Aligned_cols=26  Identities=15%  Similarity=0.217  Sum_probs=22.1

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .+-++.|+|+.||||||+.+.|+.-+
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l   29 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKY   29 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            34578999999999999999998544

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=97.12  E-value=0.00025  Score=50.22  Aligned_cols=22  Identities=36%  Similarity=0.425  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      .++++|+.|+|||||++.+.+-
T Consensus         5 ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999999864

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=97.12  E-value=0.00035  Score=50.10  Aligned_cols=25  Identities=20%  Similarity=0.375  Sum_probs=21.9

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHhcC
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      +.-.++|+|+.|+|||||++.+.+-
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4457899999999999999999874

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=97.11  E-value=0.0003  Score=54.65  Aligned_cols=25  Identities=44%  Similarity=0.654  Sum_probs=22.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHhcC
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      ++.++.|+|++||||||+.+.|+..
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~   27 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKI   27 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence            4668999999999999999999865

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.11  E-value=0.00036  Score=49.42  Aligned_cols=23  Identities=26%  Similarity=0.317  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++++|+.|+|||||++.+.+-.
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVSND   27 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998654

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=97.11  E-value=0.00024  Score=60.27  Aligned_cols=26  Identities=27%  Similarity=0.231  Sum_probs=22.3

Q ss_pred             ecCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           14 DDGVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      +.+|  +.|+||+|+|||||++++++..
T Consensus        48 ~p~g--vLL~GppGtGKT~Laraia~~~   73 (476)
T 2ce7_A           48 MPKG--ILLVGPPGTGKTLLARAVAGEA   73 (476)
T ss_dssp             CCSE--EEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCe--EEEECCCCCCHHHHHHHHHHHc
Confidence            4455  7899999999999999999864

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=97.11  E-value=0.00024  Score=51.73  Aligned_cols=23  Identities=30%  Similarity=0.421  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        25 ~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 3pqc_A           25 EVAFVGRSNVGKSSLLNALFNRK   47 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCc
Confidence            68999999999999999998874

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=97.10  E-value=0.00033  Score=52.76  Aligned_cols=29  Identities=28%  Similarity=0.432  Sum_probs=25.1

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQLNDMFSDM   44 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i~gl~~p~   44 (183)
                      .+..+.|.||+|+|||||++.++......
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~   79 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARANEL   79 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            67899999999999999999998776443

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=97.10  E-value=0.00025  Score=50.90  Aligned_cols=22  Identities=36%  Similarity=0.391  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      .++|+|+.|+|||||++.+.+-
T Consensus        11 ~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A           11 KLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5889999999999999999876

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=97.10  E-value=0.0003  Score=52.52  Aligned_cols=25  Identities=36%  Similarity=0.507  Sum_probs=22.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHhcC
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      ..-++||+|+.||||||+.+.++..
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHh
Confidence            4568999999999999999999875

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=97.10  E-value=0.00043  Score=55.60  Aligned_cols=41  Identities=20%  Similarity=0.169  Sum_probs=31.2

Q ss_pred             ecCccEEEEEcCCCCcHHHHHHHHhcC-CCC------CCcEEEEEecC
Q 036195           14 DDGVKIIGLYGVRGVGKSTLIKQLNDM-FSD------MSHKFAIYAVS   54 (183)
Q Consensus        14 i~~Ge~~~liGpNGaGKSTLl~~i~gl-~~p------~~G~I~~~g~~   54 (183)
                      +++|+++.|.||+|+|||||+..++.- ..|      ..+.+++....
T Consensus       104 l~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~  151 (324)
T 2z43_A          104 IETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG  151 (324)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred             CCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence            789999999999999999998887764 344      33445565543

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=97.09  E-value=0.0003  Score=54.35  Aligned_cols=24  Identities=25%  Similarity=0.476  Sum_probs=21.4

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           18 KIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        18 e~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      -+++|.|+.||||||+.+.|+..+
T Consensus        23 ~iI~I~G~~GSGKST~a~~L~~~l   46 (252)
T 1uj2_A           23 FLIGVSGGTASGKSSVCAKIVQLL   46 (252)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHh
Confidence            489999999999999999998743

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=97.08  E-value=0.00024  Score=51.82  Aligned_cols=23  Identities=35%  Similarity=0.432  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcC
Q 036195           18 KIIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        18 e~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      -+++|+|+.||||||+.+.|+..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~   25 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKA   25 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999999764

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=97.07  E-value=0.00029  Score=49.91  Aligned_cols=22  Identities=32%  Similarity=0.404  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      .++++|+.|+|||||++.+.+-
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999999864

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=97.07  E-value=0.00037  Score=50.54  Aligned_cols=23  Identities=43%  Similarity=0.417  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++++|+.|+|||||++.+.+-.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~   25 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGKK   25 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCcC
Confidence            37899999999999999998864

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=97.06  E-value=0.0003  Score=50.91  Aligned_cols=23  Identities=39%  Similarity=0.449  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++++|+.|+|||||++.+.+-.
T Consensus         6 ki~v~G~~~~GKSsli~~l~~~~   28 (189)
T 4dsu_A            6 KLVVVGADGVGKSALTIQLIQNH   28 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            47899999999999999998753

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=97.06  E-value=0.00029  Score=51.51  Aligned_cols=23  Identities=30%  Similarity=0.462  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~~   49 (193)
T 2oil_A           27 KVVLIGESGVGKTNLLSRFTRNE   49 (193)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            58899999999999999998853

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=97.06  E-value=0.00032  Score=55.88  Aligned_cols=23  Identities=35%  Similarity=0.527  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++|+|.+|+|||||++.+.|--
T Consensus         9 ~V~ivG~~nvGKSTLln~l~g~~   31 (301)
T 1wf3_A            9 FVAIVGKPNVGKSTLLNNLLGVK   31 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCc
Confidence            69999999999999999999863

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=97.06  E-value=0.0003  Score=51.28  Aligned_cols=23  Identities=30%  Similarity=0.362  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         9 ki~v~G~~~~GKSsli~~l~~~~   31 (208)
T 3clv_A            9 KTVLLGESSVGKSSIVLRLTKDT   31 (208)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            58899999999999999999863

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=97.06  E-value=0.00032  Score=51.07  Aligned_cols=24  Identities=29%  Similarity=0.278  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMFS   42 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~~   42 (183)
                      .++|+|+.|+|||||++.+.|-..
T Consensus        16 ki~vvG~~~~GKssL~~~l~~~~~   39 (198)
T 3t1o_A           16 KIVYYGPGLSGKTTNLKWIYSKVP   39 (198)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhhcc
Confidence            578999999999999999998754

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=97.05  E-value=0.00035  Score=54.90  Aligned_cols=26  Identities=27%  Similarity=0.353  Sum_probs=23.5

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      ++..+.|.||+|+||||+++.+++..
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~~~   78 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVATEC   78 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence            56789999999999999999999865

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=97.05  E-value=0.00031  Score=49.95  Aligned_cols=23  Identities=30%  Similarity=0.443  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcC
Q 036195           18 KIIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        18 e~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      =.++++|+.|+|||||++.+.+-
T Consensus         8 ~~i~v~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A            8 MRILILGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            36899999999999999999764

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=97.05  E-value=0.00035  Score=50.08  Aligned_cols=23  Identities=22%  Similarity=0.218  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         8 ki~v~G~~~~GKssl~~~l~~~~   30 (178)
T 2hxs_A            8 KIVVLGDGASGKTSLTTCFAQET   30 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHGGG
T ss_pred             EEEEECcCCCCHHHHHHHHHhCc
Confidence            47899999999999999998753

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=97.04  E-value=0.00032  Score=50.87  Aligned_cols=23  Identities=30%  Similarity=0.338  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        13 ki~v~G~~~~GKSsli~~l~~~~   35 (195)
T 3bc1_A           13 KFLALGDSGVGKTSVLYQYTDGK   35 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999998743

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=97.03  E-value=0.00037  Score=52.82  Aligned_cols=23  Identities=30%  Similarity=0.468  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      ++.|.|++||||||+.+.|+-.+
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~l   24 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKY   24 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999997543

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=97.03  E-value=0.00029  Score=57.82  Aligned_cols=21  Identities=43%  Similarity=0.735  Sum_probs=19.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 036195           20 IGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        20 ~~liGpNGaGKSTLl~~i~gl   40 (183)
                      ++|+|++|+|||||++.|++.
T Consensus         4 v~IVG~pnvGKSTL~n~L~~~   24 (368)
T 2dby_A            4 VGIVGLPNVGKSTLFNALTRA   24 (368)
T ss_dssp             EEEECCSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999999985

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=97.02  E-value=0.00035  Score=49.44  Aligned_cols=21  Identities=29%  Similarity=0.415  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 036195           20 IGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        20 ~~liGpNGaGKSTLl~~i~gl   40 (183)
                      ++++|+.|+|||||++.+.+-
T Consensus         3 i~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            3 ILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            789999999999999999753

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=97.02  E-value=0.00019  Score=56.99  Aligned_cols=26  Identities=31%  Similarity=0.552  Sum_probs=19.6

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      ++-++||.||+||||||+.+.++..+
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~l   29 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIF   29 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHH
Confidence            45589999999999999999988744

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=97.01  E-value=0.00033  Score=50.13  Aligned_cols=22  Identities=27%  Similarity=0.392  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      .++|+|+.|+|||||++.+.+-
T Consensus        16 ~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           16 KLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5789999999999999999864

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=97.01  E-value=0.00038  Score=55.57  Aligned_cols=24  Identities=33%  Similarity=0.436  Sum_probs=21.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           18 KIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        18 e~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      -.++|+|+.|+|||||++.+.|-.
T Consensus        11 g~v~ivG~~nvGKSTLin~l~g~~   34 (308)
T 3iev_A           11 GYVAIVGKPNVGKSTLLNNLLGTK   34 (308)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSC
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCC
Confidence            389999999999999999999863

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=97.01  E-value=0.00037  Score=54.94  Aligned_cols=23  Identities=35%  Similarity=0.781  Sum_probs=20.9

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHhc
Q 036195           17 VKIIGLYGVRGVGKSTLIKQLND   39 (183)
Q Consensus        17 Ge~~~liGpNGaGKSTLl~~i~g   39 (183)
                      .-+++|.|+.||||||+.+.|+.
T Consensus        75 ~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           75 LYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999999984

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=97.01  E-value=0.00037  Score=54.20  Aligned_cols=23  Identities=30%  Similarity=0.322  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++|+|+.|||||||++.++|-.
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g~~   25 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTNAN   25 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            58999999999999999999974

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.01  E-value=0.00047  Score=53.08  Aligned_cols=26  Identities=23%  Similarity=0.162  Sum_probs=22.6

Q ss_pred             cCccEEEEEcCCCCcHHHHHHHHhcC
Q 036195           15 DGVKIIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      .++-+++|+||.||||||+.+.|+--
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~~   52 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKKS   52 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            46678999999999999999999743

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=97.00  E-value=0.00036  Score=50.83  Aligned_cols=23  Identities=39%  Similarity=0.439  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++++|+.|+|||||++.+.+-.
T Consensus        23 ki~vvG~~~~GKSsli~~l~~~~   45 (190)
T 3con_A           23 KLVVVGAGGVGKSALTIQLIQNH   45 (190)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            57899999999999999998753

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=97.00  E-value=0.00036  Score=50.29  Aligned_cols=23  Identities=35%  Similarity=0.284  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        20 ki~v~G~~~~GKSsli~~l~~~~   42 (187)
T 2a9k_A           20 KVIMVGSGGVGKSALTLQFMYDE   42 (187)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhhCC
Confidence            58899999999999999998753

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=96.99  E-value=0.00038  Score=49.81  Aligned_cols=23  Identities=35%  Similarity=0.420  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (179)
T 1z0f_A           17 KYIIIGDMGVGKSCLLHQFTEKK   39 (179)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            58899999999999999998764

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.99  E-value=0.00038  Score=50.00  Aligned_cols=23  Identities=35%  Similarity=0.479  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++++|+.|+|||||++.+.+-.
T Consensus        12 ~i~v~G~~~~GKssli~~l~~~~   34 (180)
T 2g6b_A           12 KVMLVGDSGVGKTCLLVRFKDGA   34 (180)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC
Confidence            57899999999999999998754

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=96.99  E-value=0.00033  Score=54.82  Aligned_cols=23  Identities=39%  Similarity=0.401  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++|+|++|+|||||++.|.+--
T Consensus        10 ~I~vvG~~g~GKSTLin~L~~~~   32 (274)
T 3t5d_A           10 TLMVVGESGLGKSTLINSLFLTD   32 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHSSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            48899999999999999987653

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=96.98  E-value=4.6e-05  Score=62.46  Aligned_cols=25  Identities=24%  Similarity=0.432  Sum_probs=21.6

Q ss_pred             eecCccEEEEEcCCCCcHHHHHHHHh
Q 036195           13 EDDGVKIIGLYGVRGVGKSTLIKQLN   38 (183)
Q Consensus        13 ~i~~Ge~~~liGpNGaGKSTLl~~i~   38 (183)
                      ++.+| +..|+|||||||||++.+|.
T Consensus        22 ~f~~g-l~vi~G~NGaGKT~ileAI~   46 (371)
T 3auy_A           22 KFEKG-IVAIIGENGSGKSSIFEAVF   46 (371)
T ss_dssp             ECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred             ecCCC-eEEEECCCCCCHHHHHHHHH
Confidence            34554 99999999999999999987

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=96.98  E-value=0.00043  Score=53.46  Aligned_cols=23  Identities=30%  Similarity=0.215  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++|+|+.|||||||++.|.|-.
T Consensus        24 ~I~lvG~~g~GKStl~n~l~~~~   46 (260)
T 2xtp_A           24 RIILVGKTGTGKSAAGNSILRKQ   46 (260)
T ss_dssp             EEEEEECTTSCHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999998864

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=96.97  E-value=2.7e-05  Score=66.58  Aligned_cols=28  Identities=29%  Similarity=0.457  Sum_probs=24.6

Q ss_pred             ceecCccEEEEEcCCCCcHHHHHHHHhcC
Q 036195           12 IEDDGVKIIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        12 l~i~~Ge~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      |++.+| +.+|+|+||||||||+.+|..+
T Consensus        56 l~f~~g-~n~i~G~NGaGKS~lleAl~~l   83 (517)
T 4ad8_A           56 LELGGG-FCAFTGETGAGKSIIVDALGLL   83 (517)
T ss_dssp             EECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred             EecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence            346777 9999999999999999999666

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=96.97  E-value=0.0003  Score=51.98  Aligned_cols=22  Identities=41%  Similarity=0.558  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      .++|+|++|+|||||++.+++.
T Consensus        25 ki~vvG~~~vGKSsLi~~l~~~   46 (195)
T 3cbq_A           25 KVMLVGESGVGKSTLAGTFGGL   46 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHTCCE
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            6889999999999999999764

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=96.97  E-value=0.00042  Score=49.84  Aligned_cols=23  Identities=30%  Similarity=0.356  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++++|+.|+|||||++.+.+-.
T Consensus        14 ki~v~G~~~~GKSsli~~l~~~~   36 (181)
T 2efe_B           14 KLVLLGDVGAGKSSLVLRFVKDQ   36 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            57899999999999999998764

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.96  E-value=0.00032  Score=54.76  Aligned_cols=30  Identities=33%  Similarity=0.356  Sum_probs=26.1

Q ss_pred             ceecCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           12 IEDDGVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        12 l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      +.+.++..+.|.||+|+|||||++.++...
T Consensus        46 ~~~~~~~~~ll~G~~GtGKT~la~~la~~~   75 (285)
T 3h4m_A           46 VGIEPPKGILLYGPPGTGKTLLAKAVATET   75 (285)
T ss_dssp             HCCCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred             cCCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence            345677889999999999999999999876

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=96.96  E-value=0.00039  Score=50.28  Aligned_cols=23  Identities=30%  Similarity=0.361  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        12 ki~v~G~~~~GKSsli~~l~~~~   34 (186)
T 2bme_A           12 KFLVIGNAGTGKSCLLHQFIEKK   34 (186)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            57899999999999999998653

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=96.96  E-value=0.00042  Score=51.09  Aligned_cols=23  Identities=30%  Similarity=0.449  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~~   32 (207)
T 1vg8_A           10 KVIILGDSGVGKTSLMNQYVNKK   32 (207)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            58899999999999999998764

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=96.95  E-value=0.00042  Score=50.97  Aligned_cols=23  Identities=35%  Similarity=0.284  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        16 ki~v~G~~~~GKSsli~~l~~~~   38 (206)
T 2bov_A           16 KVIMVGSGGVGKSALTLQFMYDE   38 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            58899999999999999998653

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=96.95  E-value=0.00053  Score=53.59  Aligned_cols=29  Identities=28%  Similarity=0.332  Sum_probs=22.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCCCCCCc
Q 036195           18 KIIGLYGVRGVGKSTLIKQLNDMFSDMSH   46 (183)
Q Consensus        18 e~~~liGpNGaGKSTLl~~i~gl~~p~~G   46 (183)
                      -.++++|.+|+|||||++.+.|-.....|
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~  128 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVG  128 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC----
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccC
Confidence            48899999999999999999987654444

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.94  E-value=0.00047  Score=51.45  Aligned_cols=23  Identities=26%  Similarity=0.303  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        14 ~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           14 SIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68899999999999999999865

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=96.94  E-value=0.00042  Score=50.77  Aligned_cols=23  Identities=30%  Similarity=0.468  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        25 ki~vvG~~~~GKSsli~~l~~~~   47 (192)
T 2fg5_A           25 KVCLLGDTGVGKSSIVCRFVQDH   47 (192)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            58999999999999999998653

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.94  E-value=0.00042  Score=50.66  Aligned_cols=22  Identities=32%  Similarity=0.558  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      .++|+|+.|+|||||++.+.+-
T Consensus        10 ki~vvG~~~~GKSsli~~l~~~   31 (199)
T 2gf0_A           10 RVVVFGAGGVGKSSLVLRFVKG   31 (199)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCcHHHHHHHHHcC
Confidence            5899999999999999999874

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=96.94  E-value=0.00044  Score=50.41  Aligned_cols=23  Identities=26%  Similarity=0.320  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (189)
T 2gf9_A           24 KLLLIGNSSVGKTSFLFRYADDS   46 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            58899999999999999998764

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=96.94  E-value=0.00045  Score=50.10  Aligned_cols=27  Identities=22%  Similarity=0.354  Sum_probs=22.3

Q ss_pred             cCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           15 DGVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      ++.=.++++|+.|+|||||++.+.+-.
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~   42 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED   42 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence            445578999999999999999998753

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=96.93  E-value=0.0006  Score=49.51  Aligned_cols=23  Identities=22%  Similarity=0.262  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++++|+.|+|||||++.+.+-.
T Consensus         9 ki~v~G~~~vGKSsli~~l~~~~   31 (184)
T 1m7b_A            9 KIVVVGDSQCGKTALLHVFAKDC   31 (184)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998753

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.93  E-value=0.00049  Score=51.62  Aligned_cols=23  Identities=26%  Similarity=0.290  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++|.|+.||||||+.+.|+--+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKY   24 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999997643

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.92  E-value=0.00065  Score=48.91  Aligned_cols=27  Identities=26%  Similarity=0.347  Sum_probs=23.2

Q ss_pred             cCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           15 DGVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      ..+..+.|.||.|+||||+++.++..+
T Consensus        41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           41 RTKNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            455678999999999999999988765

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=96.92  E-value=0.00053  Score=53.33  Aligned_cols=23  Identities=30%  Similarity=0.463  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++|+|+.|+|||||++.++|-.
T Consensus         7 kI~lvG~~nvGKTsL~n~l~g~~   29 (258)
T 3a1s_A            7 KVALAGCPNVGKTSLFNALTGTK   29 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            58999999999999999999864

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.92  E-value=0.00024  Score=56.73  Aligned_cols=33  Identities=21%  Similarity=0.288  Sum_probs=26.1

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEE
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKF   48 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I   48 (183)
                      .+..+.|.||+|+|||||++.++....+....+
T Consensus        36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~   68 (324)
T 1l8q_A           36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRV   68 (324)
T ss_dssp             SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCE
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEE
Confidence            346788999999999999999998775443333

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=96.92  E-value=0.00051  Score=53.86  Aligned_cols=23  Identities=43%  Similarity=0.559  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++|+|..|||||||++.++|-.
T Consensus         5 ~I~lvG~~n~GKSTLin~l~g~~   27 (274)
T 3i8s_A            5 TIGLIGNPNSGKTTLFNQLTGSR   27 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58899999999999999999864

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=96.91  E-value=0.00051  Score=51.42  Aligned_cols=25  Identities=24%  Similarity=0.429  Sum_probs=21.7

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           17 VKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        17 Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      --.++|+|+.|+|||||++.+++-.
T Consensus        30 ~~~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           30 TVAVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            3489999999999999999988764

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=96.90  E-value=0.00048  Score=50.72  Aligned_cols=22  Identities=41%  Similarity=0.560  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      .++|+|++|+|||||++.+.|.
T Consensus         8 kv~lvG~~~vGKSsL~~~~~~~   29 (192)
T 2cjw_A            8 RVVLIGEQGVGKSTLANIFAGV   29 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4889999999999999999863

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=96.90  E-value=0.00069  Score=49.37  Aligned_cols=23  Identities=39%  Similarity=0.465  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        18 ki~v~G~~~~GKSsli~~l~~~~   40 (196)
T 3tkl_A           18 KLLLIGDSGVGKSCLLLRFADDT   40 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            58899999999999999998754

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=96.90  E-value=0.0007  Score=48.85  Aligned_cols=22  Identities=36%  Similarity=0.392  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      .++|+|+.|+|||||++.+.+-
T Consensus        20 ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           20 KLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5789999999999999999865

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=96.90  E-value=0.00051  Score=49.53  Aligned_cols=22  Identities=23%  Similarity=0.226  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      .++++|+.|+|||||++.+.+-
T Consensus         7 ~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            7 KCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5789999999999999998754

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.89  E-value=0.00076  Score=56.09  Aligned_cols=28  Identities=25%  Similarity=0.292  Sum_probs=23.8

Q ss_pred             eecCccEEEEEcCCCCcHHHHHHHHhcC
Q 036195           13 EDDGVKIIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        13 ~i~~Ge~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      .-....++.|+|++||||||+.+.++.-
T Consensus       254 ~~~~~~lIil~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          254 LSPNPEVVVAVGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             CCSSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            3456789999999999999999998754

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=96.88  E-value=0.00056  Score=50.36  Aligned_cols=23  Identities=26%  Similarity=0.320  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~~   32 (203)
T 1zbd_A           10 KILIIGNSSVGKTSFLFRYADDS   32 (203)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999998764

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.88  E-value=0.00058  Score=51.45  Aligned_cols=25  Identities=24%  Similarity=0.334  Sum_probs=21.8

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           17 VKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        17 Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      |-.+.|+|+.||||||+.+.|+.-+
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~~l   29 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKKEY   29 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh
Confidence            4578999999999999999997644

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=96.87  E-value=0.00068  Score=51.37  Aligned_cols=29  Identities=28%  Similarity=0.275  Sum_probs=24.9

Q ss_pred             cCccEEEEEcCCCCcHHHHHHHHhcCCCC
Q 036195           15 DGVKIIGLYGVRGVGKSTLIKQLNDMFSD   43 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~~p   43 (183)
                      .+|-++.|.|+.||||||+++.|...+..
T Consensus         4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~   32 (213)
T 4edh_A            4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE   32 (213)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            46889999999999999999999876654

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=96.87  E-value=0.0005  Score=50.74  Aligned_cols=28  Identities=25%  Similarity=0.242  Sum_probs=22.5

Q ss_pred             ecCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           14 DDGVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      ..+.=.++|+|+.|+|||||++.+.+-.
T Consensus        21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~   48 (201)
T 3oes_A           21 LVRYRKVVILGYRCVGKTSLAHQFVEGE   48 (201)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             CCCcEEEEEECCCCcCHHHHHHHHHhCC
Confidence            3344468999999999999999999864

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=96.87  E-value=0.00055  Score=49.86  Aligned_cols=22  Identities=27%  Similarity=0.241  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      .++|+|+.|+|||||++.+.+-
T Consensus        22 ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           22 KIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5889999999999999999864

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=96.87  E-value=0.00051  Score=50.37  Aligned_cols=23  Identities=35%  Similarity=0.625  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        28 ki~vvG~~~~GKSsLi~~l~~~~   50 (192)
T 2il1_A           28 QVIIIGSRGVGKTSLMERFTDDT   50 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHCC--
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998754

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=96.87  E-value=0.00055  Score=50.58  Aligned_cols=23  Identities=30%  Similarity=0.366  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~~   49 (200)
T 2o52_A           27 KFLVIGSAGTGKSCLLHQFIENK   49 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHC--
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC
Confidence            58899999999999999998653

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=96.86  E-value=0.00053  Score=49.43  Aligned_cols=21  Identities=43%  Similarity=0.623  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 036195           19 IIGLYGVRGVGKSTLIKQLND   39 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~g   39 (183)
                      .++|+|+.|+|||||++.+.+
T Consensus         8 ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            8 KIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHc
Confidence            578999999999999999984

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=96.86  E-value=0.00058  Score=54.09  Aligned_cols=24  Identities=21%  Similarity=0.248  Sum_probs=22.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMFS   42 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~~   42 (183)
                      .++|+|+.|||||||++.|.|...
T Consensus        26 ~I~vvG~~~~GKSTlln~l~g~~~   49 (315)
T 1jwy_B           26 QIVVVGSQSSGKSSVLENIVGRDF   49 (315)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSCC
T ss_pred             eEEEEcCCCCCHHHHHHHHHCCCc
Confidence            699999999999999999999753

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=96.86  E-value=0.00042  Score=50.59  Aligned_cols=23  Identities=26%  Similarity=0.364  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        23 ki~v~G~~~~GKSsli~~l~~~~   45 (190)
T 2h57_A           23 HVLCLGLDNSGKTTIINKLKPSN   45 (190)
T ss_dssp             EEEEEECTTSSHHHHHHHTSCGG
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68899999999999999998764

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.86  E-value=0.00052  Score=51.07  Aligned_cols=22  Identities=36%  Similarity=0.572  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      .++|+|+.|+|||||++.+.+-
T Consensus        28 ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           28 KIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            5789999999999999988764

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=96.86  E-value=0.00032  Score=52.46  Aligned_cols=25  Identities=32%  Similarity=0.283  Sum_probs=22.2

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           17 VKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        17 Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .-.++|+|+.|+|||||++.+.+-.
T Consensus        29 ~~~i~v~G~~~~GKSslin~l~~~~   53 (223)
T 4dhe_A           29 QPEIAFAGRSNAGKSTAINVLCNQK   53 (223)
T ss_dssp             SCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCC
Confidence            3478999999999999999999864

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.85  E-value=0.00054  Score=50.09  Aligned_cols=23  Identities=22%  Similarity=0.311  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        25 ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           25 KLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCcCHHHHHHHHhcCC
Confidence            57899999999999999998765

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=96.85  E-value=0.00018  Score=60.26  Aligned_cols=44  Identities=27%  Similarity=0.339  Sum_probs=33.0

Q ss_pred             ceecCc--cEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCc
Q 036195           12 IEDDGV--KIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSL   55 (183)
Q Consensus        12 l~i~~G--e~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~   55 (183)
                      +.+.++  .+++++|++|+||||+...|++.+.....+|.+-+.+.
T Consensus        92 ~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~  137 (432)
T 2v3c_C           92 LELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADT  137 (432)
T ss_dssp             CCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSC
T ss_pred             ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence            444434  59999999999999999999998765555666655443

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=96.85  E-value=0.00056  Score=52.43  Aligned_cols=29  Identities=28%  Similarity=0.390  Sum_probs=22.0

Q ss_pred             ecCccEEEEEcCCCCcHHHHHHHHhcCCC
Q 036195           14 DDGVKIIGLYGVRGVGKSTLIKQLNDMFS   42 (183)
Q Consensus        14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~~   42 (183)
                      ..+|-++.|.|+.||||||+.+.|+.-+.
T Consensus        22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~   50 (227)
T 3v9p_A           22 MARGKFITFEGIDGAGKTTHLQWFCDRLQ   50 (227)
T ss_dssp             -CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            35788999999999999999999987664

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=96.85  E-value=0.00057  Score=49.94  Aligned_cols=23  Identities=39%  Similarity=0.433  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        23 ki~v~G~~~~GKSsli~~l~~~~   45 (191)
T 2a5j_A           23 KYIIIGDTGVGKSCLLLQFTDKR   45 (191)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            57899999999999999998754

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.85  E-value=0.00064  Score=53.55  Aligned_cols=22  Identities=41%  Similarity=0.492  Sum_probs=20.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhc
Q 036195           18 KIIGLYGVRGVGKSTLIKQLND   39 (183)
Q Consensus        18 e~~~liGpNGaGKSTLl~~i~g   39 (183)
                      .++.|.|++||||||+.+.|+.
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999986

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.85  E-value=0.0006  Score=49.61  Aligned_cols=25  Identities=20%  Similarity=0.298  Sum_probs=21.3

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHhcC
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      +.=.++++|+.|+|||||++.+.+-
T Consensus        15 ~~~~i~v~G~~~~GKssl~~~l~~~   39 (187)
T 1zj6_A           15 QEHKVIIVGLDNAGKTTILYQFSMN   39 (187)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcC
Confidence            3347899999999999999999854

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=96.83  E-value=0.00056  Score=50.54  Aligned_cols=23  Identities=39%  Similarity=0.492  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~~   32 (206)
T 2bcg_Y           10 KLLLIGNSGVGKSCLLLRFSDDT   32 (206)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999998753

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.83  E-value=0.00062  Score=49.97  Aligned_cols=25  Identities=28%  Similarity=0.495  Sum_probs=21.5

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHhcC
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      +.=.++|+|+.|+|||||++.+.+-
T Consensus        27 ~~~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           27 AEVKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            3346899999999999999999875

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=96.83  E-value=0.0006  Score=51.52  Aligned_cols=24  Identities=33%  Similarity=0.408  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           18 KIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        18 e~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      -.++|+|+.|+|||||++.+.+-.
T Consensus        30 ~kI~vvG~~~vGKSsLin~l~~~~   53 (228)
T 2qu8_A           30 KTIILSGAPNVGKSSFMNIVSRAN   53 (228)
T ss_dssp             EEEEEECSTTSSHHHHHHHHTTTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            378899999999999999998763

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=96.83  E-value=0.00062  Score=48.95  Aligned_cols=23  Identities=22%  Similarity=0.147  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++++|+.|+|||||++.+.+-.
T Consensus        10 ki~v~G~~~~GKssl~~~~~~~~   32 (182)
T 3bwd_D           10 KCVTVGDGAVGKTCLLISYTSNT   32 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58899999999999999998654

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=96.83  E-value=0.00061  Score=49.70  Aligned_cols=23  Identities=22%  Similarity=0.336  Sum_probs=20.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcC
Q 036195           18 KIIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        18 e~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      =.++|+|+.|+|||||++.+.+-
T Consensus        23 ~ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           23 MELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHcC
Confidence            36889999999999999999864

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=96.82  E-value=0.00066  Score=55.10  Aligned_cols=25  Identities=24%  Similarity=0.368  Sum_probs=22.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCCC
Q 036195           18 KIIGLYGVRGVGKSTLIKQLNDMFS   42 (183)
Q Consensus        18 e~~~liGpNGaGKSTLl~~i~gl~~   42 (183)
                      .+++|.||+|||||||.+.|+..+.
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~   32 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFN   32 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcC
Confidence            4899999999999999999988664

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=96.82  E-value=0.00062  Score=49.81  Aligned_cols=23  Identities=26%  Similarity=0.251  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        25 ki~~vG~~~~GKSsl~~~l~~~~   47 (194)
T 3reg_A           25 KIVVVGDGAVGKTCLLLAFSKGE   47 (194)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            68899999999999999998764

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.82  E-value=0.00085  Score=51.06  Aligned_cols=27  Identities=30%  Similarity=0.267  Sum_probs=23.1

Q ss_pred             cCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           15 DGVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      ..+-.+.|+|+.||||||+.+.|+.-+
T Consensus        14 ~~~~~I~l~G~~GsGKsT~a~~La~~l   40 (233)
T 1ak2_A           14 PKGVRAVLLGPPGAGKGTQAPKLAKNF   40 (233)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            355689999999999999999998654

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=96.81  E-value=0.00062  Score=49.74  Aligned_cols=24  Identities=25%  Similarity=0.407  Sum_probs=21.2

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHhcC
Q 036195           17 VKIIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        17 Ge~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      .-.++|+|+.|+|||||++.+.+-
T Consensus        17 ~~ki~v~G~~~~GKSsl~~~l~~~   40 (199)
T 4bas_A           17 KLQVVMCGLDNSGKTTIINQVKPA   40 (199)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHSCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcC
Confidence            346889999999999999999875

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=96.81  E-value=0.00076  Score=51.97  Aligned_cols=29  Identities=31%  Similarity=0.462  Sum_probs=24.7

Q ss_pred             cCccEEEEEcCCCCcHHHHHHHHhcCCCC
Q 036195           15 DGVKIIGLYGVRGVGKSTLIKQLNDMFSD   43 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~~p   43 (183)
                      .+|.++.|.|++||||||+++.|+..+..
T Consensus        25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~~   53 (236)
T 3lv8_A           25 MNAKFIVIEGLEGAGKSTAIQVVVETLQQ   53 (236)
T ss_dssp             -CCCEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            46889999999999999999999876643

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=96.81  E-value=0.00064  Score=49.43  Aligned_cols=23  Identities=39%  Similarity=0.520  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        17 ~i~v~G~~~~GKssli~~l~~~~   39 (195)
T 1x3s_A           17 KILIIGESGVGKSSLLLRFTDDT   39 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            58899999999999999998753

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.80  E-value=0.00065  Score=50.27  Aligned_cols=26  Identities=35%  Similarity=0.395  Sum_probs=21.5

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      ..=.++|+|+.|+|||||++.+.+-.
T Consensus        19 ~~~~i~v~G~~~~GKSsli~~l~~~~   44 (213)
T 3cph_A           19 SIMKILLIGDSGVGKSCLLVRFVEDK   44 (213)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCC
Confidence            34468999999999999999998653

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=96.80  E-value=0.00056  Score=49.55  Aligned_cols=22  Identities=23%  Similarity=0.372  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      .++++|+.|+|||||++.+.+-
T Consensus        23 ~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           23 KVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             EEEEEEETTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999999875

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=96.80  E-value=0.00073  Score=49.67  Aligned_cols=24  Identities=38%  Similarity=0.414  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMFS   42 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~~   42 (183)
                      .++|+|+.|+|||||++.+.+-..
T Consensus        22 ki~~vG~~~vGKTsLi~~l~~~~~   45 (196)
T 3llu_A           22 RILLMGLRRSGKSSIQKVVFHKMS   45 (196)
T ss_dssp             EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhcCC
Confidence            588999999999999999988543

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=96.80  E-value=0.00075  Score=56.67  Aligned_cols=40  Identities=23%  Similarity=0.390  Sum_probs=31.9

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCc
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSL   55 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~   55 (183)
                      ++.++.++|++|+||||++..|+..+....-+|.+-..+.
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~  138 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDT  138 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCC
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            4679999999999999999999988776555666655443

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=96.78  E-value=0.00076  Score=50.22  Aligned_cols=24  Identities=29%  Similarity=0.328  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMFS   42 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~~   42 (183)
                      .++|+|+.|+|||||++.+.+-..
T Consensus        27 ki~vvG~~~~GKSsLi~~l~~~~~   50 (217)
T 2f7s_A           27 KLLALGDSGVGKTTFLYRYTDNKF   50 (217)
T ss_dssp             EEEEESCTTSSHHHHHHHHHCSCC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCC
Confidence            588999999999999999987643

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=96.78  E-value=0.00052  Score=49.33  Aligned_cols=22  Identities=32%  Similarity=0.440  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      .++++|+.|+|||||++.+.+-
T Consensus         9 ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            9 RLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             EEEEECCGGGCHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5789999999999999998875

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=96.77  E-value=0.00074  Score=50.48  Aligned_cols=22  Identities=32%  Similarity=0.448  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      .++|+|+.|+|||||++.+.+-
T Consensus        36 ki~vvG~~~vGKSsli~~l~~~   57 (214)
T 2j1l_A           36 KVVLVGDGGCGKTSLLMVFADG   57 (214)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC-
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5889999999999999999874

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.77  E-value=0.00069  Score=50.27  Aligned_cols=23  Identities=17%  Similarity=0.173  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++++|+.|+|||||++.+.+-.
T Consensus        27 ki~vvG~~~~GKSsli~~l~~~~   49 (207)
T 2fv8_A           27 KLVVVGDGACGKTCLLIVFSKDE   49 (207)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSS
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            68999999999999999998854

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=96.76  E-value=0.00092  Score=50.68  Aligned_cols=28  Identities=25%  Similarity=0.372  Sum_probs=24.6

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHhcCCCC
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQLNDMFSD   43 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i~gl~~p   43 (183)
                      +|-++.+-|+.||||||+++.|...+..
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~   29 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVETLEQ   29 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            4889999999999999999999877643

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=96.76  E-value=0.00084  Score=49.41  Aligned_cols=33  Identities=24%  Similarity=0.219  Sum_probs=22.0

Q ss_pred             cccceecCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195            9 LRYIEDDGVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus         9 l~~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      ++++.-++-=.++|+|+.|+|||||++.+.+-.
T Consensus        20 ~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~   52 (199)
T 2p5s_A           20 AKSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNE   52 (199)
T ss_dssp             --------CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred             cCCcCcCCCeEEEEECcCCCCHHHHHHHHHhCC
Confidence            344444455578999999999999999998754

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=96.75  E-value=0.00082  Score=49.37  Aligned_cols=25  Identities=24%  Similarity=0.129  Sum_probs=20.3

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           17 VKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        17 Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .=.++|+|+.|+|||||++.+.+-.
T Consensus        20 ~~ki~~~G~~~~GKssl~~~l~~~~   44 (201)
T 2q3h_A           20 GVKCVLVGDGAVGKTSLVVSYTTNG   44 (201)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHC--
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCC
Confidence            3368899999999999999998653

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=96.75  E-value=0.00099  Score=49.64  Aligned_cols=23  Identities=22%  Similarity=0.262  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        30 ki~vvG~~~vGKSsLi~~l~~~~   52 (205)
T 1gwn_A           30 KIVVVGDSQCGKTALLHVFAKDC   52 (205)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68899999999999999999864

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=96.74  E-value=0.0008  Score=49.16  Aligned_cols=22  Identities=32%  Similarity=0.496  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      .++|+|+.|+|||||++.+.+-
T Consensus        23 ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           23 NLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCcHHHHHHHHHhC
Confidence            5889999999999999888764

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.72  E-value=0.00097  Score=50.75  Aligned_cols=29  Identities=31%  Similarity=0.367  Sum_probs=24.4

Q ss_pred             eecCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           13 EDDGVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        13 ~i~~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .+.+..++.|+||.||||+|..+.|+--+
T Consensus        25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~   53 (217)
T 3umf_A           25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKF   53 (217)
T ss_dssp             CTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             hccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            46777899999999999999999887543

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=96.72  E-value=0.0008  Score=50.41  Aligned_cols=25  Identities=32%  Similarity=0.387  Sum_probs=22.0

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           17 VKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        17 Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      +-+++|+|+.||||||+.+.|+..+
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~~   27 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASEL   27 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc
Confidence            4579999999999999999998754

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=96.72  E-value=0.0009  Score=51.92  Aligned_cols=23  Identities=30%  Similarity=0.390  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++|+|+.|+|||||++.+.|-.
T Consensus        38 ~I~lvG~~g~GKSSLin~l~~~~   60 (262)
T 3def_A           38 TVLVLGKGGVGKSSTVNSLIGEQ   60 (262)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999999864

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=96.72  E-value=0.0011  Score=49.14  Aligned_cols=23  Identities=22%  Similarity=0.202  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         9 ki~vvG~~~~GKTsli~~l~~~~   31 (214)
T 2fh5_B            9 AVLFVGLCDSGKTLLFVRLLTGQ   31 (214)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58899999999999999998754

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.71  E-value=0.00084  Score=48.31  Aligned_cols=28  Identities=25%  Similarity=0.253  Sum_probs=23.5

Q ss_pred             cCccEEEEEcCCCCcHHHHHHHHhcCCC
Q 036195           15 DGVKIIGLYGVRGVGKSTLIKQLNDMFS   42 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~~   42 (183)
                      ..+..+.|.||.|+||||+++.++....
T Consensus        41 ~~~~~vll~G~~G~GKT~la~~~~~~~~   68 (187)
T 2p65_A           41 RTKNNPILLGDPGVGKTAIVEGLAIKIV   68 (187)
T ss_dssp             SSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence            4466788999999999999999987653

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=96.71  E-value=0.00075  Score=52.92  Aligned_cols=24  Identities=21%  Similarity=0.272  Sum_probs=22.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMFS   42 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~~   42 (183)
                      .++|+|..|+|||||++.+.|-..
T Consensus        28 ~i~vvG~~~~GKSSLln~l~g~~~   51 (299)
T 2aka_B           28 QIAVVGGQSAGKSSVLENFVGRDF   51 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred             eEEEEeCCCCCHHHHHHHHHCCCc
Confidence            799999999999999999998753

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.70  E-value=0.001  Score=50.14  Aligned_cols=26  Identities=27%  Similarity=0.077  Sum_probs=22.4

Q ss_pred             cCccEEEEEcCCCCcHHHHHHHHhcC
Q 036195           15 DGVKIIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      -.|..+.|+||+|+|||||...++.-
T Consensus        32 ~~g~~ilI~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           32 IYGLGVLITGDSGVGKSETALELVQR   57 (205)
T ss_dssp             ETTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred             ECCEEEEEECCCCCCHHHHHHHHHHh
Confidence            46778999999999999998888754

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=96.70  E-value=0.00082  Score=49.61  Aligned_cols=23  Identities=17%  Similarity=0.206  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        27 ki~vvG~~~~GKSsli~~l~~~~   49 (201)
T 2gco_A           27 KLVIVGDGACGKTCLLIVFSKDQ   49 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            58899999999999999998753

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=96.70  E-value=0.0009  Score=54.40  Aligned_cols=39  Identities=38%  Similarity=0.590  Sum_probs=28.3

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecC
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVS   54 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~   54 (183)
                      ..-+++|+|+.|+|||||++.+++.+....-+|.+-+.+
T Consensus        78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D  116 (355)
T 3p32_A           78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD  116 (355)
T ss_dssp             CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence            445899999999999999999987754434444444333

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.69  E-value=0.001  Score=49.59  Aligned_cols=24  Identities=29%  Similarity=0.487  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMFS   42 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~~   42 (183)
                      .+.|.||+|+|||||++.++....
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~~~~   70 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAKGLN   70 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Confidence            889999999999999999987653

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.69  E-value=0.0012  Score=50.67  Aligned_cols=28  Identities=29%  Similarity=0.198  Sum_probs=23.7

Q ss_pred             ecCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           14 DDGVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      +.....+.|.||.|+||||+.+.++...
T Consensus        36 ~~~~~~vll~G~~GtGKT~la~~la~~~   63 (262)
T 2qz4_A           36 AKVPKGALLLGPPGCGKTLLAKAVATEA   63 (262)
T ss_dssp             CCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            4555668899999999999999998854

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=96.69  E-value=0.0011  Score=50.71  Aligned_cols=27  Identities=33%  Similarity=0.561  Sum_probs=23.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHhcCCC
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQLNDMFS   42 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i~gl~~   42 (183)
                      +|-+++|.|+.||||||+.+.|+..+.
T Consensus         1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~   27 (241)
T 2ocp_A            1 GPRRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            356899999999999999999987663

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.69  E-value=0.0018  Score=45.58  Aligned_cols=41  Identities=20%  Similarity=0.284  Sum_probs=30.3

Q ss_pred             cCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCc
Q 036195           15 DGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSL   55 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~   55 (183)
                      ..+.-+-|.||.|+|||++.+.|........+.+.++....
T Consensus        22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v~~~~~~   62 (145)
T 3n70_A           22 ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTP   62 (145)
T ss_dssp             TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCEEEECCT
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEEEECCCC
Confidence            45667889999999999999999987654444433555433

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=96.68  E-value=0.0011  Score=50.28  Aligned_cols=29  Identities=24%  Similarity=0.252  Sum_probs=26.1

Q ss_pred             cCccEEEEEcCCCCcHHHHHHHHhcCCCC
Q 036195           15 DGVKIIGLYGVRGVGKSTLIKQLNDMFSD   43 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~~p   43 (183)
                      .+|.++.+-|+.||||||+.+.|.-.+..
T Consensus         3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~   31 (216)
T 3tmk_A            3 GRGKLILIEGLDRTGKTTQCNILYKKLQP   31 (216)
T ss_dssp             CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            46899999999999999999999988765

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=96.68  E-value=0.00053  Score=49.48  Aligned_cols=23  Identities=26%  Similarity=0.392  Sum_probs=9.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        10 ki~v~G~~~~GKssl~~~l~~~~   32 (183)
T 2fu5_C           10 KLLLIGDSGVGKTCVLFRFSEDA   32 (183)
T ss_dssp             EEEEECCCCC-------------
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            58899999999999999987653

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=96.68  E-value=0.00098  Score=51.90  Aligned_cols=23  Identities=30%  Similarity=0.374  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++++|+.|+|||||++.+.|-.
T Consensus        41 ~I~vvG~~g~GKSSLin~l~~~~   63 (270)
T 1h65_A           41 TILVMGKGGVGKSSTVNSIIGER   63 (270)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68899999999999999999864

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=96.67  E-value=0.0013  Score=50.33  Aligned_cols=29  Identities=31%  Similarity=0.509  Sum_probs=25.4

Q ss_pred             cCccEEEEEcCCCCcHHHHHHHHhcCCCC
Q 036195           15 DGVKIIGLYGVRGVGKSTLIKQLNDMFSD   43 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~~p   43 (183)
                      .+|-++.+.|+.||||||+.+.+...+..
T Consensus        19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~   47 (223)
T 3ld9_A           19 PGSMFITFEGIDGSGKTTQSHLLAEYLSE   47 (223)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            57889999999999999999999876643

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.67  E-value=0.00092  Score=48.81  Aligned_cols=22  Identities=23%  Similarity=0.246  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      .++++|+.|+|||||++.+.+-
T Consensus        20 ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           20 KCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6889999999999999999865

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=96.66  E-value=0.0011  Score=53.51  Aligned_cols=24  Identities=33%  Similarity=0.404  Sum_probs=21.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           18 KIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        18 e~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++.|+||+|||||||.+.|+.-+
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l   29 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADAL   29 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHc
Confidence            478999999999999999998765

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.66  E-value=0.0012  Score=53.07  Aligned_cols=25  Identities=24%  Similarity=0.375  Sum_probs=21.9

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           17 VKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        17 Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      +.++.|+||+|||||||...|+--+
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~   27 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRL   27 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhC
Confidence            4578999999999999999998665

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=96.65  E-value=0.0011  Score=50.03  Aligned_cols=22  Identities=41%  Similarity=0.560  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      .++|+|++|+|||||++.+.|.
T Consensus        39 kVvlvG~~~vGKSSLl~r~~~~   60 (211)
T 2g3y_A           39 RVVLIGEQGVGKSTLANIFAGV   60 (211)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999874

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=96.65  E-value=0.001  Score=49.92  Aligned_cols=26  Identities=35%  Similarity=0.516  Sum_probs=21.8

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHhcCCC
Q 036195           17 VKIIGLYGVRGVGKSTLIKQLNDMFS   42 (183)
Q Consensus        17 Ge~~~liGpNGaGKSTLl~~i~gl~~   42 (183)
                      --.++|+|+.|+|||||++.++.-..
T Consensus        38 ~~~i~ivG~~gvGKTtl~~~l~~~~~   63 (226)
T 2hf9_A           38 VVAFDFMGAIGSGKTLLIEKLIDNLK   63 (226)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            35789999999999999988886543

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=96.64  E-value=0.0013  Score=53.40  Aligned_cols=26  Identities=38%  Similarity=0.530  Sum_probs=23.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      ++.++.|+||.|||||||...|+.-+
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~l   64 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAHF   64 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHC
Confidence            45699999999999999999998765

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=96.60  E-value=0.00095  Score=56.05  Aligned_cols=22  Identities=27%  Similarity=0.563  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      .++|+|++|+|||||++.|+|-
T Consensus        25 ~V~lvG~~nvGKSTL~n~l~~~   46 (456)
T 4dcu_A           25 VVAIVGRPNVGKSTIFNRIAGE   46 (456)
T ss_dssp             EEEEECSSSSSHHHHHHHHEEE
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            7899999999999999999985

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=96.60  E-value=0.0009  Score=56.06  Aligned_cols=25  Identities=24%  Similarity=0.531  Sum_probs=22.6

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           17 VKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        17 Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      +..+.|.||+|+|||||+++|++..
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l  154 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYV  154 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            4578899999999999999999876

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=96.59  E-value=0.0013  Score=52.57  Aligned_cols=26  Identities=23%  Similarity=0.318  Sum_probs=23.8

Q ss_pred             ecCccEEEEEcCCCCcHHHHHHHHhc
Q 036195           14 DDGVKIIGLYGVRGVGKSTLIKQLND   39 (183)
Q Consensus        14 i~~Ge~~~liGpNGaGKSTLl~~i~g   39 (183)
                      +++|+++.|.||+|+|||||...++.
T Consensus        95 l~~g~i~~i~G~~gsGKT~la~~la~  120 (322)
T 2i1q_A           95 LESQSVTEFAGVFGSGKTQIMHQSCV  120 (322)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999999887774

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=96.58  E-value=0.0011  Score=48.98  Aligned_cols=23  Identities=22%  Similarity=0.333  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        31 ki~vvG~~~vGKSsli~~l~~~~   53 (201)
T 2hup_A           31 KLVLVGDASVGKTCVVQRFKTGA   53 (201)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhhCC
Confidence            58899999999999999998654

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=96.58  E-value=0.00017  Score=60.11  Aligned_cols=35  Identities=17%  Similarity=0.262  Sum_probs=30.1

Q ss_pred             cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCC
Q 036195           11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMS   45 (183)
Q Consensus        11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~   45 (183)
                      .+++.+|++++|+||||||||||+++|+++..|.+
T Consensus        20 ~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~   54 (430)
T 1w1w_A           20 KVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRS   54 (430)
T ss_dssp             EEECTTCSEEEEECSTTSSHHHHHHHHHHHTTC--
T ss_pred             eEEecCCCEEEEECCCCCCHHHHHHHHHhhhcccc
Confidence            36677899999999999999999999999987754

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.57  E-value=0.001  Score=53.21  Aligned_cols=25  Identities=28%  Similarity=0.426  Sum_probs=21.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCCC
Q 036195           18 KIIGLYGVRGVGKSTLIKQLNDMFS   42 (183)
Q Consensus        18 e~~~liGpNGaGKSTLl~~i~gl~~   42 (183)
                      ..+.|.||+|+||||+++.+++.+.
T Consensus        59 ~~~ll~G~~G~GKT~la~~la~~l~   83 (353)
T 1sxj_D           59 PHMLFYGPPGTGKTSTILALTKELY   83 (353)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3488999999999999999998753

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=96.56  E-value=0.00048  Score=51.40  Aligned_cols=23  Identities=43%  Similarity=0.476  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        13 ki~vvG~~~~GKSsli~~l~~~~   35 (218)
T 4djt_A           13 KICLIGDGGVGKTTYINRVLDGR   35 (218)
T ss_dssp             EEEEECCTTSSHHHHHCBCTTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999988643

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=96.55  E-value=0.0013  Score=49.47  Aligned_cols=23  Identities=39%  Similarity=0.482  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        15 ki~v~G~~~vGKSsli~~l~~~~   37 (223)
T 3cpj_B           15 KIVLIGDSGVGKSNLLSRFTKNE   37 (223)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            57899999999999999998764

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=96.53  E-value=0.00079  Score=48.97  Aligned_cols=25  Identities=16%  Similarity=0.247  Sum_probs=21.1

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHhcC
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      +.=.++++|+.|+|||||++.+.+-
T Consensus        21 ~~~~i~v~G~~~~GKssli~~l~~~   45 (189)
T 2x77_A           21 RKIRVLMLGLDNAGKTSILYRLHLG   45 (189)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcC
Confidence            4447899999999999999998643

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=96.52  E-value=0.0013  Score=48.79  Aligned_cols=23  Identities=22%  Similarity=0.186  Sum_probs=19.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcC
Q 036195           18 KIIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        18 e~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      =.++++|+.|+|||||++.+.+-
T Consensus        31 ~ki~vvG~~~~GKSsLi~~l~~~   53 (204)
T 4gzl_A           31 IKCVVVGDGAVGKTCLLISYTTN   53 (204)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECcCCCCHHHHHHHHHhC
Confidence            37889999999999999888753

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.52  E-value=0.00089  Score=51.90  Aligned_cols=29  Identities=28%  Similarity=0.424  Sum_probs=24.4

Q ss_pred             ecCccEEEEEcCCCCcHHHHHHHHhcCCC
Q 036195           14 DDGVKIIGLYGVRGVGKSTLIKQLNDMFS   42 (183)
Q Consensus        14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~~   42 (183)
                      ..++-+++|.|+.||||||+.+.|+..+.
T Consensus        21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l~   49 (263)
T 1p5z_B           21 GTRIKKISIEGNIAAGKSTFVNILKQLCE   49 (263)
T ss_dssp             --CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            46788999999999999999999887763

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=96.51  E-value=0.0012  Score=52.96  Aligned_cols=24  Identities=25%  Similarity=0.147  Sum_probs=21.9

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHhc
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQLND   39 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i~g   39 (183)
                      .|.-+.|.|++|+||||+...+.+
T Consensus       143 ~g~~vl~~G~sG~GKSt~a~~l~~  166 (314)
T 1ko7_A          143 YGVGVLITGDSGIGKSETALELIK  166 (314)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHh
Confidence            688899999999999999988877

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.50  E-value=0.0016  Score=49.02  Aligned_cols=23  Identities=35%  Similarity=0.436  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      ++.|+||.||||+|..+.|+--+
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~   24 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEK   24 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            46799999999999999988654

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=96.50  E-value=0.001  Score=54.37  Aligned_cols=39  Identities=26%  Similarity=0.209  Sum_probs=28.8

Q ss_pred             ecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcE-EEEEe
Q 036195           14 DDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHK-FAIYA   52 (183)
Q Consensus        14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~-I~~~g   52 (183)
                      +.+|+++.|.|++|+|||||...++.-.....+. ++++.
T Consensus        60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~   99 (356)
T 1u94_A           60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA   99 (356)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence            6799999999999999999987776543323333 44544

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=96.49  E-value=0.0019  Score=51.70  Aligned_cols=27  Identities=7%  Similarity=0.056  Sum_probs=24.1

Q ss_pred             ecCccEEEEEcCCCCcHHHHHHHHhcC
Q 036195           14 DDGVKIIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        14 i~~Ge~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      +.+|+++.|.|++|+|||||+..++.-
T Consensus        65 l~~G~l~li~G~pG~GKTtl~l~ia~~   91 (315)
T 3bh0_A           65 YKRRNFVLIAARPSMGKTAFALKQAKN   91 (315)
T ss_dssp             BCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence            899999999999999999998777643

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=96.48  E-value=0.0015  Score=48.94  Aligned_cols=22  Identities=23%  Similarity=0.300  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      .++|+|+.|+|||||++.+.+-
T Consensus        29 ki~vvG~~~vGKSsL~~~l~~~   50 (214)
T 3q3j_B           29 KLVLVGDVQCGKTAMLQVLAKD   50 (214)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            5889999999999999998875

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=96.48  E-value=0.00052  Score=50.48  Aligned_cols=22  Identities=32%  Similarity=0.454  Sum_probs=4.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      .++|+|+.|+|||||++.+.+-
T Consensus        22 ~i~v~G~~~~GKssli~~l~~~   43 (208)
T 2yc2_C           22 KVAVVGEATVGKSALISMFTSK   43 (208)
T ss_dssp             EEEEC-----------------
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            6889999999999999988876

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=96.45  E-value=0.002  Score=47.54  Aligned_cols=24  Identities=21%  Similarity=0.119  Sum_probs=20.0

Q ss_pred             CccEEEEEcCCCCcHHHHH-HHHhc
Q 036195           16 GVKIIGLYGVRGVGKSTLI-KQLND   39 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl-~~i~g   39 (183)
                      +|.++.+.||.|+||||++ +++..
T Consensus         2 ~g~i~vi~G~~gsGKTT~ll~~~~~   26 (184)
T 2orw_A            2 SGKLTVITGPMYSGKTTELLSFVEI   26 (184)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             ccEEEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999997 55543

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=96.45  E-value=0.00072  Score=60.59  Aligned_cols=31  Identities=26%  Similarity=0.195  Sum_probs=25.8

Q ss_pred             ecCccEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 036195           14 DDGVKIIGLYGVRGVGKSTLIKQLNDMFSDM   44 (183)
Q Consensus        14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~   44 (183)
                      +..|+.+.|+||+||||||++.++.+...+.
T Consensus       106 l~~~~~vii~gpTGSGKTtllp~ll~~~~~~  136 (773)
T 2xau_A          106 YQNNQIMVFVGETGSGKTTQIPQFVLFDEMP  136 (773)
T ss_dssp             HHHCSEEEEECCTTSSHHHHHHHHHHHHHCG
T ss_pred             HhCCCeEEEECCCCCCHHHHHHHHHHHhccc
Confidence            5678999999999999999999887654443

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=96.45  E-value=0.0018  Score=51.97  Aligned_cols=25  Identities=32%  Similarity=0.418  Sum_probs=21.9

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           17 VKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        17 Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      ..++.|+||+|||||||...++.-+
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~~~   34 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRKIL   34 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CcEEEEECCCccCHHHHHHHHHHhC
Confidence            4588999999999999999998664

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=96.43  E-value=0.002  Score=47.48  Aligned_cols=26  Identities=27%  Similarity=0.139  Sum_probs=21.5

Q ss_pred             ecCccEEEEEcCCCCcHHHHHHHHhc
Q 036195           14 DDGVKIIGLYGVRGVGKSTLIKQLND   39 (183)
Q Consensus        14 i~~Ge~~~liGpNGaGKSTLl~~i~g   39 (183)
                      .-.|.-+.|.|++|+|||||...+..
T Consensus        13 ~v~G~gvli~G~SGaGKStlal~L~~   38 (181)
T 3tqf_A           13 VIDKMGVLITGEANIGKSELSLALID   38 (181)
T ss_dssp             EETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred             EECCEEEEEEcCCCCCHHHHHHHHHH
Confidence            34677899999999999999777654

>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}

Probab=96.43  E-value=0.0012  Score=54.59  Aligned_cols=34  Identities=12%  Similarity=0.096  Sum_probs=28.2

Q ss_pred             ccccce-ecCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195            8 HLRYIE-DDGVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus         8 ~l~~l~-i~~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      ++|.|. +.+|+..+|+|+.|+|||||+..|+...
T Consensus       165 aID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i  199 (427)
T 3l0o_A          165 LIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGI  199 (427)
T ss_dssp             HHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred             hhhhcccccCCceEEEecCCCCChhHHHHHHHHHH
Confidence            344443 8999999999999999999998887753

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=96.41  E-value=0.0022  Score=47.42  Aligned_cols=23  Identities=17%  Similarity=0.076  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        11 ki~i~G~~~~GKTsli~~l~~~~   33 (212)
T 2j0v_A           11 KCVTVGDGAVGKTCMLICYTSNK   33 (212)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58899999999999999998643

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=96.39  E-value=0.0015  Score=53.00  Aligned_cols=39  Identities=10%  Similarity=0.118  Sum_probs=31.3

Q ss_pred             ecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEe
Q 036195           14 DDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYA   52 (183)
Q Consensus        14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g   52 (183)
                      +.+|+++.|.|++|+|||||+..++.......+.|.|..
T Consensus        43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS   81 (338)
T 4a1f_A           43 FNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS   81 (338)
T ss_dssp             BCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence            899999999999999999998887766544555665544

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.39  E-value=0.0012  Score=52.29  Aligned_cols=28  Identities=25%  Similarity=0.313  Sum_probs=23.2

Q ss_pred             ecCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           14 DDGVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      ++....+.|.||.|+|||+|.+.|+.-.
T Consensus        33 ~~~p~~lLl~GppGtGKT~la~aiA~~l   60 (293)
T 3t15_A           33 IKVPLILGIWGGKGQGKSFQCELVFRKM   60 (293)
T ss_dssp             CCCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4444567788999999999999999765

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=96.39  E-value=0.0005  Score=53.21  Aligned_cols=23  Identities=35%  Similarity=0.387  Sum_probs=20.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcC
Q 036195           18 KIIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        18 e~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      .-+.|.||+|+|||||++.++..
T Consensus        45 ~~vll~G~~GtGKT~la~~la~~   67 (268)
T 2r62_A           45 KGVLLVGPPGTGKTLLAKAVAGE   67 (268)
T ss_dssp             SCCCCBCSSCSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHHHH
Confidence            33779999999999999999874

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=96.35  E-value=0.003  Score=49.82  Aligned_cols=26  Identities=35%  Similarity=0.358  Sum_probs=22.7

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHhcCCC
Q 036195           17 VKIIGLYGVRGVGKSTLIKQLNDMFS   42 (183)
Q Consensus        17 Ge~~~liGpNGaGKSTLl~~i~gl~~   42 (183)
                      +-.++++|.+|+|||||++.+.|-..
T Consensus       120 ~~~v~~vG~~nvGKSsliN~l~~~~~  145 (282)
T 1puj_A          120 AIRALIIGIPNVGKSTLINRLAKKNI  145 (282)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred             CceEEEEecCCCchHHHHHHHhcCce
Confidence            34789999999999999999998754

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=96.35  E-value=0.0016  Score=52.49  Aligned_cols=28  Identities=21%  Similarity=0.376  Sum_probs=24.5

Q ss_pred             cCccEEEEEcCCCCcHHHHHHHHhcCCC
Q 036195           15 DGVKIIGLYGVRGVGKSTLIKQLNDMFS   42 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~~   42 (183)
                      ..+..+.|.||.|+|||||++.++....
T Consensus        42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~   69 (387)
T 2v1u_A           42 EKPSNALLYGLTGTGKTAVARLVLRRLE   69 (387)
T ss_dssp             CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence            5667899999999999999999987763

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=96.34  E-value=0.0025  Score=47.91  Aligned_cols=33  Identities=21%  Similarity=0.364  Sum_probs=25.8

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEE
Q 036195           17 VKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAI   50 (183)
Q Consensus        17 Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~   50 (183)
                      |.+++|=|+-||||||+++.|.-.+.. ...+.+
T Consensus         2 ~kFI~~EG~dGsGKsTq~~~L~~~L~~-~~~v~~   34 (205)
T 4hlc_A            2 SAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIM   34 (205)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEE
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHHC-CCCEEE
Confidence            568899999999999999999887642 334444

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=96.31  E-value=0.0028  Score=48.00  Aligned_cols=24  Identities=29%  Similarity=0.279  Sum_probs=21.7

Q ss_pred             ecCccEEEEEcCCCCcHHHHHHHH
Q 036195           14 DDGVKIIGLYGVRGVGKSTLIKQL   37 (183)
Q Consensus        14 i~~Ge~~~liGpNGaGKSTLl~~i   37 (183)
                      +.+|+++-|.|+.|+|||||.--+
T Consensus        27 l~~G~l~~i~G~pG~GKT~l~l~~   50 (251)
T 2zts_A           27 FPEGTTVLLTGGTGTGKTTFAAQF   50 (251)
T ss_dssp             EETTCEEEEECCTTSSHHHHHHHH
T ss_pred             CCCCeEEEEEeCCCCCHHHHHHHH
Confidence            899999999999999999996544

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=96.30  E-value=0.002  Score=53.29  Aligned_cols=23  Identities=35%  Similarity=0.381  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++|+|.+++|||||++.++|-.
T Consensus         2 kI~ivG~pnvGKSTL~n~L~~~~   24 (397)
T 1wxq_A            2 EIGVVGKPNVGKSTFFSAATLVD   24 (397)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            37999999999999999999864

>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...

Probab=96.27  E-value=0.0024  Score=54.05  Aligned_cols=34  Identities=32%  Similarity=0.436  Sum_probs=28.1

Q ss_pred             ccccc-eecCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195            8 HLRYI-EDDGVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus         8 ~l~~l-~i~~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      ++|.| .+.+|+..+|+|+.|+|||||+..|+.-.
T Consensus       143 ~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~  177 (482)
T 2ck3_D          143 VVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV  177 (482)
T ss_dssp             HHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             EEecccccccCCeeeeecCCCCChHHHHHHHHHhh
Confidence            44444 38999999999999999999998887654

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.24  E-value=0.0026  Score=46.82  Aligned_cols=23  Identities=22%  Similarity=0.244  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .+.|.||.|+||||+++.++..+
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~~   62 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARDL   62 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            48899999999999999998754

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.22  E-value=0.0031  Score=49.54  Aligned_cols=27  Identities=19%  Similarity=0.357  Sum_probs=22.6

Q ss_pred             cCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           15 DGVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++..+.|.||.|+||||+.+.++..+
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la~~l   91 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMAGLL   91 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            345578999999999999999887765

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=96.20  E-value=0.0029  Score=52.51  Aligned_cols=24  Identities=50%  Similarity=0.681  Sum_probs=20.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           18 KIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        18 e~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .+++|.||+|||||||...|+--+
T Consensus         3 ~~i~i~GptgsGKttla~~La~~~   26 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQKF   26 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             cEEEEECcchhhHHHHHHHHHHHC
Confidence            478999999999999999887654

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=96.20  E-value=0.0023  Score=53.36  Aligned_cols=23  Identities=26%  Similarity=0.492  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++|+|++|+|||||++.++|-.
T Consensus         5 ~V~ivG~~nvGKStL~n~l~~~~   27 (436)
T 2hjg_A            5 VVAIVGRPNVGKSTIFNRIAGER   27 (436)
T ss_dssp             EEEEECSTTSSHHHHHHHHEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999999853

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.18  E-value=0.0029  Score=48.56  Aligned_cols=23  Identities=26%  Similarity=0.355  Sum_probs=19.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcC
Q 036195           18 KIIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        18 e~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      -.+||+|+.||||||+.+.|+--
T Consensus         9 ~~~~~~G~pGsGKsT~a~~L~~~   31 (230)
T 3gmt_A            9 MRLILLGAPGAGKGTQANFIKEK   31 (230)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cceeeECCCCCCHHHHHHHHHHH
Confidence            36899999999999999988653

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=96.16  E-value=0.0036  Score=50.44  Aligned_cols=38  Identities=16%  Similarity=0.184  Sum_probs=29.5

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEec
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAV   53 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~   53 (183)
                      +|..+-|.||.|+||||+.+.++..+......+.+.+.
T Consensus        69 ~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~  106 (368)
T 3uk6_A           69 AGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGS  106 (368)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGG
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccch
Confidence            45689999999999999999999887644444555543

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=96.15  E-value=0.004  Score=47.74  Aligned_cols=40  Identities=23%  Similarity=0.298  Sum_probs=29.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcc
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ   56 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~   56 (183)
                      +.-++.++|+.|+||||++..++..+. ..-++.+-+.+.+
T Consensus        13 ~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~   52 (262)
T 1yrb_A           13 ASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTG   52 (262)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSS
T ss_pred             ceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCC
Confidence            445888999999999999999986665 4335655554443

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=96.13  E-value=0.0019  Score=48.33  Aligned_cols=22  Identities=36%  Similarity=0.543  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHH-HhcC
Q 036195           19 IIGLYGVRGVGKSTLIKQ-LNDM   40 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~-i~gl   40 (183)
                      .++|+|+.|+|||||++. +.|-
T Consensus        17 ki~v~G~~~~GKSsli~~~~~~~   39 (221)
T 3gj0_A           17 KLVLVGDGGTGKTTFVKRHLTGE   39 (221)
T ss_dssp             EEEEEECTTSSHHHHHTTBHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            588999999999999998 5554

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=95.11  E-value=0.00091  Score=49.36  Aligned_cols=23  Identities=22%  Similarity=0.186  Sum_probs=19.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcC
Q 036195           18 KIIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        18 e~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      =.++++|+.|+|||||++.+.+-
T Consensus        31 ~ki~v~G~~~~GKSsli~~l~~~   53 (204)
T 3th5_A           31 IKCVVVGDGAVGKTCLLISYTTN   53 (204)
Confidence            35889999999999999887653

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=96.06  E-value=0.0029  Score=53.38  Aligned_cols=26  Identities=23%  Similarity=0.316  Sum_probs=22.4

Q ss_pred             cCccEEEEEcCCCCcHHHHHHHHhcC
Q 036195           15 DGVKIIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      .+|=.++|+|+.|+|||||++.+++-
T Consensus       222 r~~~kV~ivG~~nvGKSSLln~L~~~  247 (462)
T 3geh_A          222 RTGLKVAIVGRPNVGKSSLLNAWSQS  247 (462)
T ss_dssp             HHCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence            34556999999999999999999885

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.06  E-value=0.004  Score=50.26  Aligned_cols=26  Identities=19%  Similarity=0.143  Sum_probs=22.7

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .+..+.|.||.|+|||||++.++...
T Consensus        44 ~~~~vll~G~~G~GKT~la~~l~~~~   69 (384)
T 2qby_B           44 VKFSNLFLGLTGTGKTFVSKYIFNEI   69 (384)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            35689999999999999999998764

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.05  E-value=0.004  Score=49.86  Aligned_cols=27  Identities=33%  Similarity=0.331  Sum_probs=23.4

Q ss_pred             cCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           15 DGVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .+..-+.|.||.|+|||||.+.++...
T Consensus        43 ~~~~~iLL~GppGtGKT~la~ala~~~   69 (322)
T 1xwi_A           43 TPWRGILLFGPPGTGKSYLAKAVATEA   69 (322)
T ss_dssp             CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CCCceEEEECCCCccHHHHHHHHHHHc
Confidence            455678899999999999999999765

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=96.04  E-value=0.0042  Score=49.53  Aligned_cols=26  Identities=38%  Similarity=0.525  Sum_probs=23.2

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHhcCCC
Q 036195           17 VKIIGLYGVRGVGKSTLIKQLNDMFS   42 (183)
Q Consensus        17 Ge~~~liGpNGaGKSTLl~~i~gl~~   42 (183)
                      +..+.|.||.|+|||+|+++|+....
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~  177 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELS  177 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHH
Confidence            67899999999999999999987654

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=96.04  E-value=0.004  Score=52.07  Aligned_cols=29  Identities=7%  Similarity=-0.019  Sum_probs=25.6

Q ss_pred             ecCccEEEEEcCCCCcHHHHHHHHhcCCC
Q 036195           14 DDGVKIIGLYGVRGVGKSTLIKQLNDMFS   42 (183)
Q Consensus        14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~~   42 (183)
                      +.+|+++.|.|++|+|||||...++.-..
T Consensus       197 l~~G~l~ii~G~pg~GKT~lal~ia~~~a  225 (444)
T 2q6t_A          197 LGPGSLNIIAARPAMGKTAFALTIAQNAA  225 (444)
T ss_dssp             CCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             cCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            78999999999999999999887776543

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=96.04  E-value=0.002  Score=52.21  Aligned_cols=23  Identities=22%  Similarity=0.325  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++|+|..|+|||||++.|.|..
T Consensus        33 ~I~vvG~~~~GKSSLln~L~g~~   55 (353)
T 2x2e_A           33 QIAVVGGQSAGKSSVLENFVGRD   55 (353)
T ss_dssp             EEEEECBTTSSHHHHHHTTTTSC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999999964

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.03  E-value=0.0041  Score=48.17  Aligned_cols=28  Identities=18%  Similarity=0.175  Sum_probs=23.3

Q ss_pred             ecCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           14 DDGVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      ..+...+-|.||.|+||||+.+.++...
T Consensus        61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~   88 (272)
T 1d2n_A           61 RTPLVSVLLEGPPHSGKTALAAKIAEES   88 (272)
T ss_dssp             SCSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence            3455678899999999999999998863

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=95.99  E-value=0.0034  Score=51.37  Aligned_cols=25  Identities=28%  Similarity=0.328  Sum_probs=22.7

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHhcC
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      ++..++++|+.|+|||||++.|.+-
T Consensus       161 ~~~~i~~vG~~nvGKStliN~L~~~  185 (369)
T 3ec1_A          161 EGGDVYVVGCTNVGKSTFINRIIEE  185 (369)
T ss_dssp             TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ccCcEEEEcCCCCchHHHHHHHHhh
Confidence            4567999999999999999999986

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=95.98  E-value=0.0035  Score=54.03  Aligned_cols=26  Identities=23%  Similarity=0.337  Sum_probs=22.8

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .--.++|+|..|+|||||++.|.|-.
T Consensus        64 ~~~~V~vvG~~n~GKSTLIN~Llg~~   89 (550)
T 2qpt_A           64 GKPMVLVAGQYSTGKTSFIQYLLEQE   89 (550)
T ss_dssp             SCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCc
Confidence            33489999999999999999999864

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=95.97  E-value=0.0059  Score=48.51  Aligned_cols=24  Identities=25%  Similarity=0.238  Sum_probs=20.7

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHhcC
Q 036195           17 VKIIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        17 Ge~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      +-.++|+|+.|+|||||++.+.+-
T Consensus         3 ~~KI~lvG~~~vGKSSLi~~l~~~   26 (307)
T 3r7w_A            3 GSKLLLMGRSGSGKSSMRSIIFSN   26 (307)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            346899999999999999997765

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=95.95  E-value=0.00061  Score=50.19  Aligned_cols=23  Identities=39%  Similarity=0.465  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        35 ki~vvG~~~~GKSsli~~l~~~~   57 (199)
T 3l0i_B           35 KLLLIGDSGVGKSCLLLRFADDT   57 (199)
T ss_dssp             EEEEECCTTSCCTTTTTSSBCCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999988754

>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*

Probab=95.95  E-value=0.0031  Score=53.57  Aligned_cols=35  Identities=31%  Similarity=0.438  Sum_probs=28.4

Q ss_pred             cccccce-ecCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195            7 PHLRYIE-DDGVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus         7 ~~l~~l~-i~~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      +++|.|. +.+|+..+|+|+.|+|||||+..|+.-.
T Consensus       154 rvID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~  189 (498)
T 1fx0_B          154 KVVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNI  189 (498)
T ss_dssp             TTHHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHT
T ss_pred             eEeeeecccccCCeEEeecCCCCCchHHHHHHHHHH
Confidence            3444443 8999999999999999999998877654

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=95.94  E-value=0.0069  Score=46.65  Aligned_cols=39  Identities=21%  Similarity=0.212  Sum_probs=28.9

Q ss_pred             cCccEEEEEcCCCCcHHHHHHHHhcCCCCCCc-EEEEEec
Q 036195           15 DGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSH-KFAIYAV   53 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G-~I~~~g~   53 (183)
                      ..+..+-|.||.|+|||++.+.|+.......+ -+.++..
T Consensus        27 ~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~   66 (265)
T 2bjv_A           27 PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA   66 (265)
T ss_dssp             TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGG
T ss_pred             CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecC
Confidence            34567889999999999999999988754433 3445543

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=95.94  E-value=0.0043  Score=48.52  Aligned_cols=26  Identities=31%  Similarity=0.461  Sum_probs=22.6

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .+..+.|.||.|+||||+.+.++..+
T Consensus        49 ~~~~vll~G~~GtGKT~la~~la~~l   74 (310)
T 1ofh_A           49 TPKNILMIGPTGVGKTEIARRLAKLA   74 (310)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHh
Confidence            34567899999999999999999876

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=95.91  E-value=0.0037  Score=54.37  Aligned_cols=25  Identities=24%  Similarity=0.426  Sum_probs=22.3

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           17 VKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        17 Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      --+++|+|+.++|||||++.|.|-.
T Consensus        38 ~~~VaivG~pnvGKStLiN~L~g~~   62 (592)
T 1f5n_A           38 MVVVAIVGLYRTGKSYLMNKLAGKK   62 (592)
T ss_dssp             EEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             CcEEEEECCCCCCHHHHHHhHcCCC
Confidence            3578999999999999999999864

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=95.91  E-value=0.0042  Score=50.35  Aligned_cols=26  Identities=35%  Similarity=0.487  Sum_probs=23.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      ++..+.|.||+|+||||+.+.|+...
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~~   75 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARLL   75 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence            45578899999999999999999876

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=95.89  E-value=0.0055  Score=49.70  Aligned_cols=27  Identities=30%  Similarity=0.284  Sum_probs=23.4

Q ss_pred             cCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           15 DGVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .+...+.|.||.|+|||||++.++...
T Consensus       115 ~~~~~vLl~GppGtGKT~la~aia~~~  141 (357)
T 3d8b_A          115 GPPKGILLFGPPGTGKTLIGKCIASQS  141 (357)
T ss_dssp             SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence            355678899999999999999998865

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=95.88  E-value=0.0041  Score=52.23  Aligned_cols=25  Identities=28%  Similarity=0.425  Sum_probs=22.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMFSD   43 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~~p   43 (183)
                      .+.|.||+|+|||||.+.|+.....
T Consensus        52 ~vLL~GppGtGKTtlAr~ia~~~~~   76 (447)
T 3pvs_A           52 SMILWGPPGTGKTTLAEVIARYANA   76 (447)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             EEEEECCCCCcHHHHHHHHHHHhCC
Confidence            4889999999999999999988754

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=95.87  E-value=0.005  Score=52.55  Aligned_cols=26  Identities=27%  Similarity=0.411  Sum_probs=21.3

Q ss_pred             cCccEEEEEcCCCCcHHHHHHHHhcC
Q 036195           15 DGVKIIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      .+..+++|+|++|+||||++..|+..
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~  124 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYY  124 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            34568999999999999999999943

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=95.86  E-value=0.005  Score=50.79  Aligned_cols=23  Identities=30%  Similarity=0.593  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++++|+.|+|||||++.++|..
T Consensus        10 ~I~vvG~~~~GKSTLi~~L~~~~   32 (403)
T 3sjy_A           10 NIGVVGHVDHGKTTLVQAITGIW   32 (403)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCcc
Confidence            68999999999999999999854

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=95.83  E-value=0.006  Score=48.63  Aligned_cols=27  Identities=37%  Similarity=0.370  Sum_probs=22.8

Q ss_pred             cCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           15 DGVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .+..-+-|.||.|+|||+|.+.++...
T Consensus        49 ~~~~~vLl~GppGtGKT~la~aia~~~   75 (322)
T 3eie_A           49 KPTSGILLYGPPGTGKSYLAKAVATEA   75 (322)
T ss_dssp             CCCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence            345568899999999999999998764

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=95.83  E-value=0.0057  Score=48.49  Aligned_cols=34  Identities=26%  Similarity=0.329  Sum_probs=27.0

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEec
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAV   53 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~   53 (183)
                      .|.++.|.||.|+|||||++.++.-.    |.++++..
T Consensus        30 ~~~~v~i~G~~G~GKT~Ll~~~~~~~----~~~~~~~~   63 (350)
T 2qen_A           30 NYPLTLLLGIRRVGKSSLLRAFLNER----PGILIDCR   63 (350)
T ss_dssp             HCSEEEEECCTTSSHHHHHHHHHHHS----SEEEEEHH
T ss_pred             cCCeEEEECCCcCCHHHHHHHHHHHc----CcEEEEee
Confidence            46899999999999999999987654    35666543

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=95.82  E-value=0.0032  Score=51.10  Aligned_cols=22  Identities=41%  Similarity=0.619  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      -++|+|..+||||||++.+++-
T Consensus       160 ~V~lvG~~nvGKSTLln~L~~~  181 (342)
T 1lnz_A          160 DVGLVGFPSVGKSTLLSVVSSA  181 (342)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEE
T ss_pred             eeeeeCCCCCCHHHHHHHHHcC
Confidence            4789999999999999999865

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=95.82  E-value=0.0039  Score=51.04  Aligned_cols=25  Identities=36%  Similarity=0.454  Sum_probs=22.9

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHhcC
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      ++..++++|..|+|||||++.|.|-
T Consensus       159 ~~~~i~~vG~~nvGKStliN~L~~~  183 (368)
T 3h2y_A          159 GGKDVYVVGCTNVGKSTFINRMIKE  183 (368)
T ss_dssp             TTSCEEEEEBTTSSHHHHHHHHHHH
T ss_pred             ccceEEEecCCCCChhHHHHHHHhh
Confidence            5678999999999999999999986

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=95.81  E-value=0.0056  Score=53.58  Aligned_cols=26  Identities=27%  Similarity=0.386  Sum_probs=23.3

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      +|.++.|+|.+||||||+.+.|+..+
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~~L   76 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEEYL   76 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence            57789999999999999999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	183
d2p67a1	327	c.37.1.10 (A:1-327) LAO/AO transport system kinase	2e-04
d2qm8a1	323	c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylo	0.001
d2a5yb3	277	c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenor	0.003

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} Length = 327

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

 Score = 38.3 bits (88), Expect = 2e-04
 Identities = 11/42 (26%), Positives = 19/42 (45%)

Query: 19 IIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKIS 60
           +G+ G  G GKST ++    +      K A+ AV     ++
Sbjct: 56 RLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVT 97

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} Length = 323

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

 Score = 36.0 bits (82), Expect = 0.001
 Identities = 16/42 (38%), Positives = 22/42 (52%)

Query: 19 IIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKIS 60
           +G+ GV GVGKST I  L  + +   HK A+ AV      +
Sbjct: 53 RVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRT 94

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 35.2 bits (80), Expect = 0.003
 Identities = 17/142 (11%), Positives = 38/142 (26%), Gaps = 14/142 (9%)

Query: 8   HLRYIEDDGVKIIGLYGVRGVGKSTLIKQ-LNDMFSDMSHKFAIYA-VSLQKKISVCSFI 65
            L  + D     + L+G  G GKS +  Q L+     +   +     +         +F 
Sbjct: 35  KLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFD 94

Query: 66  LIRRAYFFKLPNLKSICHEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGVLIGEEEWW 125
           L              +   ++       +        R +  +L        +  +    
Sbjct: 95  LFTDILLMLKSEDDLLNFPSVEHVTSVVL-------KRMICNALIDRPNTLFVFDDVVQE 147

Query: 126 NQLEWDDEATKHVFSSKLIITT 147
             + W           + ++TT
Sbjct: 148 ETIRWA-----QELRLRCLVTT 164

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	183
d2awna2	232	Maltose transport protein MalK, N-terminal domain	100.0
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	100.0
d1g2912	240	Maltose transport protein MalK, N-terminal domain	100.0
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	100.0
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	100.0
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	100.0
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.98
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	99.98
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	99.97
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	99.96
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	99.96
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	99.95
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.95
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.95
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.95
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.94
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.94
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.07
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	99.03
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	98.15
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	98.09
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	98.06
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	98.05
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	98.02
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	98.01
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.01
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.99
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.96
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	97.91
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	97.9
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.89
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.89
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.81
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.8
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.74
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.73
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.73
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.73
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.73
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.72
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.68
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.66
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.63
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.63
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.61
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	97.61
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.56
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	97.54
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	97.53
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	97.52
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.52
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.49
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.48
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.46
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.45
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	97.45
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.44
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	97.43
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	97.43
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	97.43
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	97.41
d1nrjb_	209	Signal recognition particle receptor beta-subunit	97.41
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.41
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.4
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	97.39
d1okkd2	207	GTPase domain of the signal recognition particle r	97.39
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.37
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.36
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.35
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	97.34
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.33
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.33
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.33
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.28
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.28
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.28
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.28
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.27
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	97.26
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	97.26
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	97.25
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	97.24
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	97.24
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	97.24
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.24
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.23
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.19
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.19
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.19
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.17
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	97.16
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	97.13
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.12
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	97.11
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.11
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	97.11
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	97.1
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.09
d2fh5b1	207	Signal recognition particle receptor beta-subunit	97.09
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	97.08
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.07
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	97.06
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	97.05
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.04
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	97.02
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.01
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	97.01
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.01
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	97.01
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	97.0
d1j8yf2	211	GTPase domain of the signal sequence recognition p	96.99
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	96.99
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	96.97
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.96
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	96.94
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	96.93
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.91
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	96.9
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	96.9
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.89
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	96.88
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	96.88
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.87
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	96.87
d1xpua3	289	Transcription termination factor Rho, ATPase domai	96.85
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.85
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.83
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	96.82
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.8
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	96.79
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	96.78
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	96.77
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.76
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.76
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	96.73
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.73
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	96.72
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.7
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.7
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.69
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	96.66
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	96.66
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	96.66
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	96.65
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	96.65
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	96.64
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.64
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	96.63
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	96.63
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	96.61
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	96.6
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	96.6
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	96.6
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	96.59
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	96.59
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	96.56
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	96.55
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	96.54
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.52
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	96.51
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.51
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.49
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	96.48
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.46
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	96.45
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.45
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	96.45
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	96.41
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	96.4
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	96.39
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	96.39
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	96.38
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.38
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	96.36
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.35
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	96.34
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	96.34
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	96.33
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	96.32
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.3
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	96.3
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.29
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.27
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	96.26
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	96.26
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	96.23
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	96.23
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	96.21
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	96.18
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	96.16
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	96.15
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	96.15
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	96.15
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	96.14
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	96.13
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	96.13
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	96.1
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	96.09
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	96.05
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	96.04
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	95.99
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	95.97
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	95.96
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	95.93
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.83
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	95.79
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	95.78
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.77
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	95.74
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.71
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	95.69
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	95.63
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.61
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	95.59
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	95.58
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.54
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	95.47
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	95.45
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	95.4
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	95.37
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	94.92
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	94.92
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	94.9
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	94.82
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	94.78
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	94.77
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	94.73
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	94.58
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	94.54
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	94.38
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	94.35
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	94.3
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	94.28
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	94.17
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	93.82
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	93.69
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	93.6
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	93.39
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	93.3
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	93.15
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	93.1
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	93.01
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	92.75
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	92.66
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	92.54
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	92.3
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	92.04
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	91.86
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	91.82
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	91.79
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	91.5
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	91.48
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	91.45
d1tuea_	205	Replication protein E1 helicase domain {Human papi	91.44
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	91.36
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	91.23
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	90.94
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	90.43
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	90.4
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	90.34
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	90.24
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	89.72
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	89.7
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	89.65
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	88.76
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	88.0
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	87.24
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	86.7
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	86.34
d1gg4a4	214	UDP-murNac-tripeptide D-alanyl-D-alanine-adding en	85.74
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	83.31
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	82.24
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	82.11
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	81.16
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	80.73

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=8.7e-37  Score=235.23  Aligned_cols=163  Identities=12%  Similarity=0.015  Sum_probs=116.4

Q ss_pred             ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      .++|+  ||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++....      .. ...+++++|...++.
T Consensus        13 ~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~------~~-~r~ig~v~Q~~~l~~   85 (232)
T d2awna2          13 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTP------PA-ERGVGMVFQSYALYP   85 (232)
T ss_dssp             EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSC------GG-GTCEEEECSSCCC--
T ss_pred             EEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCc------hh-hceeeeecccccccc
Confidence            45777  5679999999999999999999999999999999999999999876421      11 134566666544433


Q ss_pred             ccc-------------------chHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195           84 EAL-------------------AFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT  135 (183)
Q Consensus        84 ~~~-------------------~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~  135 (183)
                      ...                   ...+.++++.+++..+.++++.+|||||+|+      ++.+|+.+   ||....|+.+
T Consensus        86 ~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~  165 (232)
T d2awna2          86 HLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAAL  165 (232)
T ss_dssp             -------------------CHHHHHHHHHHHHC---------------------CHHHHHHTCCSEEEEESTTTTSCHHH
T ss_pred             chhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHH
Confidence            211                   1236788999999999999999999999984      47888887   9999999999


Q ss_pred             ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+..++..+..+...+++++|||++++++.|||+++++
T Consensus       166 ~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~  205 (232)
T d2awna2         166 RVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLD  205 (232)
T ss_dssp             HHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEE
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence            9999999999888889999999999999999999999996

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=1.1e-36  Score=235.54  Aligned_cols=163  Identities=7%  Similarity=-0.029  Sum_probs=134.9

Q ss_pred             ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      ..+|+  ||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.+..     +.  ...+++++|...++.
T Consensus        19 ~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~-----~~--~r~ig~v~Q~~~l~~   91 (239)
T d1v43a3          19 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLP-----PK--DRNISMVFQSYAVWP   91 (239)
T ss_dssp             EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC-----GG--GGTEEEEEC------
T ss_pred             EEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCC-----cc--cceEEEEeechhhcc
Confidence            45677  5679999999999999999999999999999999999999999876421     11  134566666544443


Q ss_pred             ccc-------------------chHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195           84 EAL-------------------AFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT  135 (183)
Q Consensus        84 ~~~-------------------~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~  135 (183)
                      ...                   ...+.++++.+++..++++++.+|||||+|+      ++.+|+.+   ||+...|+.+
T Consensus        92 ~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~  171 (239)
T d1v43a3          92 HMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKL  171 (239)
T ss_dssp             CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHH
T ss_pred             cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhccCCCceeecCCcccCCHHH
Confidence            211                   1235778999999999999999999999983      48899997   9999999999


Q ss_pred             ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+..++..+..+..++++++|||++++.+.|||+++++
T Consensus       172 ~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~  211 (239)
T d1v43a3         172 RVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMN  211 (239)
T ss_dssp             HHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEE
T ss_pred             HHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEE
Confidence            9999999999988889999999999999999999999987

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=100.00  E-value=2.7e-36  Score=233.56  Aligned_cols=169  Identities=11%  Similarity=0.039  Sum_probs=138.6

Q ss_pred             ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      .++|+  ||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++....... ........+++++|...++.
T Consensus        16 ~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~-~~~~~~r~ig~v~Q~~~L~~   94 (240)
T d1g2912          16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGI-FVPPKDRDIAMVFQSYALYP   94 (240)
T ss_dssp             EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTE-ECCGGGSSEEEECSCCCCCT
T ss_pred             EEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhh-hcccccccceecccchhhcc
Confidence            45777  5569999999999999999999999999999999999999998875421100 00111234666666555544


Q ss_pred             ccc-------------------chHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195           84 EAL-------------------AFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT  135 (183)
Q Consensus        84 ~~~-------------------~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~  135 (183)
                      ...                   ...+.++++.+++++++++++.+|||||+|+      +..+|+.+   ||....|+.+
T Consensus        95 ~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~  174 (240)
T d1g2912          95 HMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKL  174 (240)
T ss_dssp             TSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHH
T ss_pred             hhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHH
Confidence            321                   1136778999999999999999999999983      47888887   9999999999


Q ss_pred             ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+..++..+..+...+++++|||++++.+.||||++++
T Consensus       175 ~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~  214 (240)
T d1g2912         175 RVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMN  214 (240)
T ss_dssp             HHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEE
T ss_pred             HHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEE
Confidence            9999999999988889999999999999999999999987

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=100.00  E-value=2.9e-36  Score=231.72  Aligned_cols=162  Identities=10%  Similarity=0.005  Sum_probs=138.5

Q ss_pred             cccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195            7 PHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE   84 (183)
Q Consensus         7 ~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~   84 (183)
                      .+|+  ||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.+..     +  ....+++++|...++..
T Consensus        14 ~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~-----~--~~r~ig~v~Q~~~l~~~   86 (229)
T d3d31a2          14 FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLS-----P--EKHDIAFVYQNYSLFPH   86 (229)
T ss_dssp             CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSC-----H--HHHTCEEECTTCCCCTT
T ss_pred             EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccc-----h--hHhcceeeccccccCcc
Confidence            3677  5679999999999999999999999999999999999999999886421     1  12356777776655543


Q ss_pred             cc----------------chHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccccccc
Q 036195           85 AL----------------AFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVF  139 (183)
Q Consensus        85 ~~----------------~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~  139 (183)
                      ..                ..++.++++.+++..+.++++.+|||||+|+      +..+|+.+   ||....|+.++..+
T Consensus        87 ~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i  166 (229)
T d3d31a2          87 MNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENA  166 (229)
T ss_dssp             SCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHH
T ss_pred             ccHHHHHHHHHhhccccHHHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHH
Confidence            22                1246788999999999999999999999983      48889987   99999999999999


Q ss_pred             ccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          140 SSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ..++..+..+...+|+++|||++++++.||||+++.
T Consensus       167 ~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~  202 (229)
T d3d31a2         167 REMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVM  202 (229)
T ss_dssp             HHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEES
T ss_pred             HHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEE
Confidence            999999988889999999999999999999999984

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=1.1e-35  Score=232.86  Aligned_cols=165  Identities=12%  Similarity=0.025  Sum_probs=132.5

Q ss_pred             ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      .++|+  ||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++....    ........++++||...++.
T Consensus        17 ~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~----~~~~~~~gi~~v~Q~~~~~~   92 (254)
T d1g6ha_          17 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKE----PAELYHYGIVRTFQTPQPLK   92 (254)
T ss_dssp             EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCC----HHHHHHHTEEECCCCCGGGG
T ss_pred             eEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchh----HHHHHHhcCCccCCccccCC
Confidence            35777  5679999999999999999999999999999999999999999876421    11111223444444332222


Q ss_pred             cc--------------------------------cchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc
Q 036195           84 EA--------------------------------LAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW  125 (183)
Q Consensus        84 ~~--------------------------------~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~  125 (183)
                      ..                                ....+.++++.+++..+.++++.+|||||+|+      ++.+|+.+
T Consensus        93 ~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~Qrv~iAraL~~~P~ll  172 (254)
T d1g6ha_          93 EMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMI  172 (254)
T ss_dssp             GSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEE
T ss_pred             CCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchhhCCcHHHHHHHHHHHHHhCcCch
Confidence            10                                01235678889999999999999999999983      47888886


Q ss_pred             ---ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          126 ---NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       126 ---~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                         ||....|+.++..+..++..++.+ .++|+++|||++++++.||||++++
T Consensus       173 ilDEPt~gLD~~~~~~i~~~i~~l~~~-g~til~vsHdl~~~~~~~Drv~vm~  224 (254)
T d1g6ha_         173 VMDEPIAGVAPGLAHDIFNHVLELKAK-GITFLIIEHRLDIVLNYIDHLYVMF  224 (254)
T ss_dssp             EEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCSTTGGGCSEEEEEE
T ss_pred             hhcCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCcHHHHHHhCCEEEEEe
Confidence               899999999999999999988765 8999999999999999999999986

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=5.9e-36  Score=231.60  Aligned_cols=168  Identities=8%  Similarity=-0.035  Sum_probs=137.3

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      .++|++  |+|++||++||+||||||||||+++|+|+++|++|+|.++|+++........ + .....+++++|...+++
T Consensus        18 ~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~-~-~~rr~ig~vfQ~~~L~p   95 (242)
T d1oxxk2          18 VVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIV-P-PEDRKIGMVFQTWALYP   95 (242)
T ss_dssp             EEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESS-C-GGGSCEEEEETTSCCCT
T ss_pred             EEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhc-c-hhhccceEEeccccccc
Confidence            456875  5699999999999999999999999999999999999999998764211000 0 01123555555444443


Q ss_pred             ccc-------------------chHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195           84 EAL-------------------AFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT  135 (183)
Q Consensus        84 ~~~-------------------~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~  135 (183)
                      ...                   ...+.++++.+++..+.++++.+|||||+|+      +..+|+.+   ||+...|+.+
T Consensus        96 ~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~  175 (242)
T d1oxxk2          96 NLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARM  175 (242)
T ss_dssp             TSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGG
T ss_pred             cccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHHhHHhhcccceeecCCccCCCHHH
Confidence            211                   1246789999999999999999999999983      48899987   9999999999


Q ss_pred             ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+..++..+..+..++++++|||++++.+.|||+++++
T Consensus       176 ~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~  215 (242)
T d1oxxk2         176 RDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLV  215 (242)
T ss_dssp             HHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEE
T ss_pred             HHHHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEE
Confidence            9999999999988889999999999999999999999986

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.5e-35  Score=229.40  Aligned_cols=167  Identities=16%  Similarity=0.045  Sum_probs=137.7

Q ss_pred             cccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195            7 PHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE   84 (183)
Q Consensus         7 ~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~   84 (183)
                      .+|+  ||+|++||++||+||||||||||+++|+|+.+|++|+|.++|+++...... ....++ ..+++++|...++..
T Consensus        19 ~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~-~~~~~r-r~ig~VfQ~~~l~~~   96 (240)
T d3dhwc1          19 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSES-ELTKAR-RQIGMIFQHFNLLSS   96 (240)
T ss_dssp             EEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHH-HHHHHH-HHEEECCSSCCCCTT
T ss_pred             EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChh-hhhhhh-ccccccccccccCCC
Confidence            4688  567999999999999999999999999999999999999999987642100 011111 246666665444432


Q ss_pred             cc-------------------chHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccc
Q 036195           85 AL-------------------AFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATK  136 (183)
Q Consensus        85 ~~-------------------~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~  136 (183)
                      ..                   ...+.++++.+++.+.+++++.+|||||+|+      ++.+|+.+   ||+...|+.++
T Consensus        97 ~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~  176 (240)
T d3dhwc1          97 RTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATT  176 (240)
T ss_dssp             SBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHH
T ss_pred             ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhhhhccCCCeEEeccccccCCHHHh
Confidence            11                   1246788999999999999999999999983      48899987   99999999999


Q ss_pred             cccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          137 HVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ..+..++..+..+...+++++|||++++.+.|||+++++
T Consensus       177 ~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~  215 (240)
T d3dhwc1         177 RSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVIS  215 (240)
T ss_dssp             HHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEE
T ss_pred             hHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEE
Confidence            999999999998889999999999999999999999986

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=100.00  E-value=1.3e-35  Score=230.51  Aligned_cols=165  Identities=12%  Similarity=0.013  Sum_probs=131.7

Q ss_pred             ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      .++|+  ||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++....    ........+++.|+...++.
T Consensus        19 ~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~----~~~~~r~gi~~~~q~~~l~~   94 (240)
T d1ji0a_          19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKP----AHVINRMGIALVPEGRRIFP   94 (240)
T ss_dssp             EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCC----HHHHHHTTEEEECSSCCCCT
T ss_pred             EEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEeccccccccc----HHHHHHhcccccCcccccCC
Confidence            35777  5569999999999999999999999999999999999999999876531    11122233555565544443


Q ss_pred             cccc------------------hHHHHHHHHc-CCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCccc
Q 036195           84 EALA------------------FPCLERIYVH-GCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEAT  135 (183)
Q Consensus        84 ~~~~------------------~~~l~vLe~l-~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~  135 (183)
                      ....                  .....+++.+ ++.+..++++.+|||||+|+      ++.+|+.+   ||....|+.+
T Consensus        95 ~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~  174 (240)
T d1ji0a_          95 ELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPIL  174 (240)
T ss_dssp             TSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHH
T ss_pred             cccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHH
Confidence            2111                  1123445554 57788999999999999983      48899987   9999999999


Q ss_pred             ccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          136 KHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+..++..+..+ ..+|+++|||++++++.||||++++
T Consensus       175 ~~~i~~~i~~l~~~-g~til~~tH~l~~~~~~~drv~vl~  213 (240)
T d1ji0a_         175 VSEVFEVIQKINQE-GTTILLVEQNALGALKVAHYGYVLE  213 (240)
T ss_dssp             HHHHHHHHHHHHHT-TCCEEEEESCHHHHHHHCSEEEEEE
T ss_pred             HHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEE
Confidence            99999999999776 8999999999999999999999986

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=5.2e-35  Score=225.11  Aligned_cols=167  Identities=13%  Similarity=0.028  Sum_probs=132.0

Q ss_pred             cccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccc
Q 036195            7 PHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHE   84 (183)
Q Consensus         7 ~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~   84 (183)
                      .+|+  ||+|++||++||+||||||||||+++|+|+++|++|+|.|+|+++...... .........+++++|...++..
T Consensus        19 ~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~-~~~~~r~~~ig~v~Q~~~l~~~   97 (230)
T d1l2ta_          19 YALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDD-ELTKIRRDKIGFVFQQFNLIPL   97 (230)
T ss_dssp             EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHH-HHHHHHHHHEEEECTTCCCCTT
T ss_pred             EEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChh-hcchhhcceEEEEecchhhCcC
Confidence            3688  667999999999999999999999999999999999999999987642100 0011111235555554333321


Q ss_pred             cc----------------------chHHHHHHHHcCCCC-ccCCCCCCCChhhhhe------ecCchhhc---ccccccC
Q 036195           85 AL----------------------AFPCLERIYVHGCPS-LRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDD  132 (183)
Q Consensus        85 ~~----------------------~~~~l~vLe~l~L~~-L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d  132 (183)
                      ..                      ...+.+.++.+++++ +.++++.+|||||+|+      ++.+|+.+   ||....|
T Consensus        98 ~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD  177 (230)
T d1l2ta_          98 LTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALD  177 (230)
T ss_dssp             SCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSC
T ss_pred             ccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHhhhhcCCCEEEecCCccccC
Confidence            11                      123567888999975 6899999999999983      47889987   9999999


Q ss_pred             cccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          133 EATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +.++..+..++..+..+...+++++|||++++ +.||||+.++
T Consensus       178 ~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a-~~~drv~~m~  219 (230)
T d1l2ta_         178 SKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLK  219 (230)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCEEEEECSCHHHH-TTSSEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHhhCCEEEEECCCHHHH-HhCCEEEEEE
Confidence            99999999999999888899999999999865 8999999985

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.98  E-value=8.3e-35  Score=225.53  Aligned_cols=164  Identities=15%  Similarity=0.047  Sum_probs=135.3

Q ss_pred             ccccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccc
Q 036195            5 YRPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSIC   82 (183)
Q Consensus         5 ~~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~   82 (183)
                      .+++|++  |+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.+.      +......++++|+...++
T Consensus        14 ~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~------~~~~~~~i~~vpq~~~~~   87 (238)
T d1vpla_          14 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEE------PHEVRKLISYLPEEAGAY   87 (238)
T ss_dssp             TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTC------HHHHHTTEEEECTTCCCC
T ss_pred             CEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccC------hHHHHhhEeEeeeccccC
Confidence            4578885  45899999999999999999999999999999999999999987642      111123466667665554


Q ss_pred             ccccc-------------------hHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcc
Q 036195           83 HEALA-------------------FPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEA  134 (183)
Q Consensus        83 ~~~~~-------------------~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~  134 (183)
                      ++...                   ....++++.+++....+.++.+|||||+|+      ++++|+.+   ||....|+.
T Consensus        88 ~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~  167 (238)
T d1vpla_          88 RNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVL  167 (238)
T ss_dssp             TTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHH
T ss_pred             CCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHH
Confidence            43221                   124567888899999999999999999983      48888887   999999999


Q ss_pred             cccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          135 TKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      .+..+..++..+..+ ..+|+++|||++++++.||||+.++
T Consensus       168 ~~~~i~~~i~~~~~~-g~tii~~tH~l~~~~~~~drv~vl~  207 (238)
T d1vpla_         168 NAREVRKILKQASQE-GLTILVSSHNMLEVEFLCDRIALIH  207 (238)
T ss_dssp             HHHHHHHHHHHHHHT-TCEEEEEECCHHHHTTTCSEEEEEE
T ss_pred             HHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEE
Confidence            999999999988766 8999999999999999999999887

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.98  E-value=1.3e-34  Score=223.54  Aligned_cols=156  Identities=15%  Similarity=0.037  Sum_probs=132.1

Q ss_pred             ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccccccc-----
Q 036195           12 IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICHEAL-----   86 (183)
Q Consensus        12 l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~~~~-----   86 (183)
                      |++. +|+++|+||||||||||+|+|+|+++|++|+|.++|.++.+..     +.  ...+++++|...++....     
T Consensus        20 ~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~-----~~--~r~ig~v~Q~~~l~~~ltV~enl   91 (240)
T d2onka1          20 FEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP-----PE--RRGIGFVPQDYALFPHLSVYRNI   91 (240)
T ss_dssp             EEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC-----TT--TSCCBCCCSSCCCCTTSCHHHHH
T ss_pred             EEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCC-----HH--HcCceeeccchhhcccchhhHhh
Confidence            3343 5899999999999999999999999999999999999886531     11  235677777655554321     


Q ss_pred             ------------chHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccccceee
Q 036195           87 ------------AFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFSSKLII  145 (183)
Q Consensus        87 ------------~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~~~~~~  145 (183)
                                  ...+.++++.+++.++.++++.+|||||+|+      ++.+|+.+   ||....|+.++..+..++..
T Consensus        92 ~~~l~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~  171 (240)
T d2onka1          92 AYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRF  171 (240)
T ss_dssp             HTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHH
T ss_pred             hhhhcccCHHHHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHH
Confidence                        1236788999999999999999999999983      47889887   99999999999999999999


Q ss_pred             cCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          146 TTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      +..+..++++++|||++++++.|||++.++
T Consensus       172 l~~~~g~tvi~vtHd~~~~~~~adri~vm~  201 (240)
T d2onka1         172 VQREFDVPILHVTHDLIEAAMLADEVAVML  201 (240)
T ss_dssp             HHHHHTCCEEEEESCHHHHHHHCSEEEEEE
T ss_pred             HHHhcCCeEEEEeCCHHHHHHhCCEEEEEE
Confidence            988889999999999999999999999996

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.97  E-value=7.9e-34  Score=222.30  Aligned_cols=169  Identities=11%  Similarity=0.012  Sum_probs=131.9

Q ss_pred             ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcccccccc--------chheeehhhhccC
Q 036195            6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVC--------SFILIRRAYFFKL   75 (183)
Q Consensus         6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~--------~~~~l~~~~lg~l   75 (183)
                      .++|+  ||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.......        .........++++
T Consensus        15 ~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~ig~v   94 (258)
T d1b0ua_          15 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMV   94 (258)
T ss_dssp             EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEE
T ss_pred             EEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhcccccHhHHHHHhcceEEE
Confidence            46787  5569999999999999999999999999999999999999999875421100        0011112334555


Q ss_pred             CCCcccccccc--------------------chHHHHHHHHcCCCC-ccCCCCCCCChhhhhe------ecCchhhc---
Q 036195           76 PNLKSICHEAL--------------------AFPCLERIYVHGCPS-LRKLPFSLESGKRNGV------LIGEEEWW---  125 (183)
Q Consensus        76 p~l~~l~~~~~--------------------~~~~l~vLe~l~L~~-L~~~~~~~LSgGqk~~------i~~~~~w~---  125 (183)
                      +|...++....                    ...+.++++.+++.. ..++++.+|||||+|+      +..+|+.+   
T Consensus        95 fQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~iAraL~~~P~llilD  174 (258)
T d1b0ua_          95 FQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFD  174 (258)
T ss_dssp             CSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEE
T ss_pred             EechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHHHHHHHHHhcCCCEEEec
Confidence            55433332211                    123577889999976 4678889999999983      47888886   


Q ss_pred             ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          126 NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       126 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ||....|+.++..+..++..+..+ ..+|+++|||++++++.||||++++
T Consensus       175 EPT~gLD~~~~~~i~~ll~~l~~~-g~til~vtHdl~~~~~~adri~vm~  223 (258)
T d1b0ua_         175 EPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLH  223 (258)
T ss_dssp             STTTTSCHHHHHHHHHHHHHHHHT-TCCEEEECSCHHHHHHHCSEEEEEE
T ss_pred             cccccCCHHHHHHHHHhhhhhccc-CCceEEEeCCHHHHHHhCCEEEEEE
Confidence            999999999999999999998766 8899999999999999999999985

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.5e-31  Score=206.59  Aligned_cols=164  Identities=12%  Similarity=0.023  Sum_probs=122.3

Q ss_pred             cccccc--ceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRY--IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~--l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      .++|++  |+|++||++||+||||||||||+++|+|+++|++|+|.++|.++....     .......+++++|...++.
T Consensus        27 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~-----~~~~r~~i~~v~Q~~~lf~  101 (251)
T d1jj7a_          27 VLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYE-----HRYLHRQVAAVGQEPQVFG  101 (251)
T ss_dssp             CCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBC-----HHHHHHHEEEECSSCCCCS
T ss_pred             CEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhh-----hHHHHHHhhhccccccccC
Confidence            358885  558999999999999999999999999999999999999999876531     1111134556666554432


Q ss_pred             cc-------------cchHHHHH---------HHHc--CCCCccCCCCCCCChhhhhe------ecCchhhc---ccccc
Q 036195           84 EA-------------LAFPCLER---------IYVH--GCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEW  130 (183)
Q Consensus        84 ~~-------------~~~~~l~v---------Le~l--~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~  130 (183)
                      ..             ......+.         ++.+  ++....+.....|||||+|+      +..+|+.+   ||...
T Consensus       102 ~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~~~p~ililDEpTs~  181 (251)
T d1jj7a_         102 RSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSA  181 (251)
T ss_dssp             SBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred             cchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeeccccCCcEEEecCcCcc
Confidence            11             01111111         2222  23344556677899999983      37788876   89999


Q ss_pred             cCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          131 DDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       131 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      .|+.++..+...+..+..+..++++++|||++.+ +.||||++++
T Consensus       182 LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~-~~aDrI~vl~  225 (251)
T d1jj7a_         182 LDANSQLQVEQLLYESPERYSRSVLLITQHLSLV-EQADHILFLE  225 (251)
T ss_dssp             CCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHH-HTCSEEEEEE
T ss_pred             cChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHH-HhCCEEEEEE
Confidence            9999999999999888888899999999999865 6799999997

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=3.2e-31  Score=204.65  Aligned_cols=163  Identities=15%  Similarity=0.038  Sum_probs=123.5

Q ss_pred             ccccc--cceecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccc--
Q 036195            6 RPHLR--YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSI--   81 (183)
Q Consensus         6 ~~~l~--~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l--   81 (183)
                      +++|+  ||+|++||++||+||||||||||+++|+|+. |++|+|.++|+++.....    ..+ ....+++++....  
T Consensus        12 ~~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~----~~~-~~~~~~~~~~~~~~~   85 (231)
T d1l7vc_          12 STRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSA----TKL-ALHRAYLSQQQTPPF   85 (231)
T ss_dssp             TTTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCH----HHH-HHHEEEECSCCCCCS
T ss_pred             CceecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCH----HHH-HhhceeeeccccCCc
Confidence            45676  5568999999999999999999999999975 789999999998754210    000 0111222221110  


Q ss_pred             ----c--------ccccchHHHHHHHHcCCCCccCCCCCCCChhhhhe--ec----C-------chhhc---ccccccCc
Q 036195           82 ----C--------HEALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV--LI----G-------EEEWW---NQLEWDDE  133 (183)
Q Consensus        82 ----~--------~~~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~--i~----~-------~~~w~---~~l~~~d~  133 (183)
                          +        .........++++.+++....++++.+|||||+|+  |+    .       +|+.+   ||....|+
T Consensus        86 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~  165 (231)
T d1l7vc_          86 ATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDV  165 (231)
T ss_dssp             SCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCH
T ss_pred             cccHHHHhhhccchhhHHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCH
Confidence                0        01112235678889999999999999999999883  22    1       44665   89999999


Q ss_pred             ccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          134 ATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      ..+..+..++..+..+ ..+|+++|||++++++.|||+++++
T Consensus       166 ~~~~~i~~~i~~l~~~-g~tii~vtHdl~~~~~~~dri~vl~  206 (231)
T d1l7vc_         166 AQQSALDKILSALCQQ-GLAIVMSSHDLNHTLRHAHRAWLLK  206 (231)
T ss_dssp             HHHHHHHHHHHHHHHT-TCEEEECCCCHHHHHHHCSBCCBEE
T ss_pred             HHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHHCCEEEEEE
Confidence            9999999999998766 8999999999999999999999985

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=99.95  E-value=5e-30  Score=198.99  Aligned_cols=162  Identities=14%  Similarity=0.036  Sum_probs=119.4

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|+++  ++++||++||+||||||||||+++|+|+++|++|+|.++|.++....    ...+ ...+++++|...++.
T Consensus        15 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~----~~~~-r~~i~~v~Q~~~lf~   89 (242)
T d1mv5a_          15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNIS----LENW-RSQIGFVSQDSAIMA   89 (242)
T ss_dssp             SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTS----CSCC-TTTCCEECCSSCCCC
T ss_pred             CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEecccc----HHHH-HhheEEEccccccCC
Confidence            4688855  59999999999999999999999999999999999999999876531    1111 234666666554443


Q ss_pred             c-------------ccchHHHHHHHHcCCCCcc-----------CCCCCCCChhhhhe------ecCchhhc---ccccc
Q 036195           84 E-------------ALAFPCLERIYVHGCPSLR-----------KLPFSLESGKRNGV------LIGEEEWW---NQLEW  130 (183)
Q Consensus        84 ~-------------~~~~~~l~vLe~l~L~~L~-----------~~~~~~LSgGqk~~------i~~~~~w~---~~l~~  130 (183)
                      .             .......++++..++....           ......|||||+|+      +..+|+.+   ||...
T Consensus        90 ~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ililDEpts~  169 (242)
T d1mv5a_          90 GTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATAS  169 (242)
T ss_dssp             EEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCS
T ss_pred             cchhhheecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEecCCccc
Confidence            1             1112234455554443221           12345699999984      36677776   89999


Q ss_pred             cCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          131 DDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       131 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      .|+.++..+...+..+..  .++++++||+++.+ +.||||+++|
T Consensus       170 LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l~~~-~~~D~i~vl~  211 (242)
T d1mv5a_         170 LDSESESMVQKALDSLMK--GRTTLVIAHRLSTI-VDADKIYFIE  211 (242)
T ss_dssp             SCSSSCCHHHHHHHHHHT--TSEEEEECCSHHHH-HHCSEEEEEE
T ss_pred             cCHHHHHHHHHHHHHHcC--CCEEEEEECCHHHH-HhCCEEEEEE
Confidence            999999999999887653  68999999999866 5699999997

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.95  E-value=4.6e-30  Score=200.42  Aligned_cols=162  Identities=14%  Similarity=0.079  Sum_probs=119.1

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      .++|+++  +|++||++||+||||||||||+++|+|+++|++|+|.++|.++....    ...+ ...+++++|...++.
T Consensus        28 ~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~----~~~~-r~~i~~v~Q~~~l~~  102 (253)
T d3b60a1          28 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYT----LASL-RNQVALVSQNVHLFN  102 (253)
T ss_dssp             CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBC----HHHH-HHTEEEECSSCCCCS
T ss_pred             CceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhh----hhhh-hheEEEEeeccccCC
Confidence            4688855  59999999999999999999999999999999999999999876421    1111 123555555443332


Q ss_pred             c-------------ccchHHHHHHHHcC-----------CCCccCCCCCCCChhhhhe------ecCchhhc---ccccc
Q 036195           84 E-------------ALAFPCLERIYVHG-----------CPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEW  130 (183)
Q Consensus        84 ~-------------~~~~~~l~vLe~l~-----------L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~  130 (183)
                      .             .......++++..+           +.......+..|||||+|+      ++.+|+.+   ||.+.
T Consensus       103 ~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~~p~ililDEpts~  182 (253)
T d3b60a1         103 DTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSA  182 (253)
T ss_dssp             SBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSS
T ss_pred             cchhhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEecccccc
Confidence            1             11122334444333           3334455677899999984      36677766   89999


Q ss_pred             cCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          131 DDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       131 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      .|+.++..+...+..+..  ..+++++|||++.+ +.||+|++++
T Consensus       183 LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l~~~-~~~D~v~vl~  224 (253)
T d3b60a1         183 LDTESERAIQAALDELQK--NRTSLVIAHRLSTI-EQADEIVVVE  224 (253)
T ss_dssp             CCHHHHHHHHHHHHHHHT--TSEEEEECSCGGGT-TTCSEEEEEE
T ss_pred             CCHHHHHHHHHHHHHhcc--CCEEEEEECCHHHH-HhCCEEEEEE
Confidence            999999999888877643  67899999999865 6799999997

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=9.9e-30  Score=197.05  Aligned_cols=162  Identities=14%  Similarity=0.078  Sum_probs=119.8

Q ss_pred             ccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCccccc
Q 036195            6 RPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSICH   83 (183)
Q Consensus         6 ~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~~   83 (183)
                      +++|+++  +|++||++||+||||||||||+++|+|+++|++|+|.++|.++....    ...+ ...+++++|...++.
T Consensus        16 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~----~~~l-r~~i~~v~Q~~~lf~   90 (241)
T d2pmka1          16 PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALAD----PNWL-RRQVGVVLQDNVLLN   90 (241)
T ss_dssp             CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSC----HHHH-HHHEEEECSSCCCTT
T ss_pred             cceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccc----hhhh-hceEEEEecccccCC
Confidence            4688854  69999999999999999999999999999999999999999876421    1111 134666666554443


Q ss_pred             cc------------cchHHHHHHHHcCC-----------CCccCCCCCCCChhhhhe------ecCchhhc---cccccc
Q 036195           84 EA------------LAFPCLERIYVHGC-----------PSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWD  131 (183)
Q Consensus        84 ~~------------~~~~~l~vLe~l~L-----------~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~  131 (183)
                      ..            .......+++..++           ..........|||||+|+      +..+|+.+   |+..-.
T Consensus        91 ~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ililDEpts~L  170 (241)
T d2pmka1          91 RSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSAL  170 (241)
T ss_dssp             SBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCC
T ss_pred             ccccccccccCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcccchhhhhCCcccc
Confidence            21            11223344444333           223445567899999984      36777776   889999


Q ss_pred             CcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          132 DEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       132 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      |+.++..+...+..+..  .++++++||+++.+ +.||||+++|
T Consensus       171 D~~~~~~i~~~l~~l~~--~~Tvi~itH~l~~~-~~~D~i~vl~  211 (241)
T d2pmka1         171 DYESEHVIMRNMHKICK--GRTVIIIAHRLSTV-KNADRIIVME  211 (241)
T ss_dssp             CHHHHHHHHHHHHHHHT--TSEEEEECSSGGGG-TTSSEEEEEE
T ss_pred             CHHHHHHHHHHHHHHhC--CCEEEEEECCHHHH-HhCCEEEEEE
Confidence            99999998888877643  57899999999865 7799999997

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.95  E-value=1.9e-29  Score=190.69  Aligned_cols=155  Identities=16%  Similarity=0.147  Sum_probs=115.0

Q ss_pred             cccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccc
Q 036195            5 YRPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSIC   82 (183)
Q Consensus         5 ~~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~   82 (183)
                      .++||+++  +|++||++||+||||||||||+++|+|+++|++|+|.++|.++....          ..++++|+...++
T Consensus        13 ~~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~----------~~i~~~~~~~~~~   82 (200)
T d1sgwa_          13 DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVK----------GKIFFLPEEIIVP   82 (200)
T ss_dssp             SSEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGG----------GGEEEECSSCCCC
T ss_pred             CCeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhHhc----------CcEEEEeecccCC
Confidence            35788855  59999999999999999999999999999999999999998876421          1122323222111


Q ss_pred             cc-----------------ccchHHHHHHHHcCCCCccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccc
Q 036195           83 HE-----------------ALAFPCLERIYVHGCPSLRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATK  136 (183)
Q Consensus        83 ~~-----------------~~~~~~l~vLe~l~L~~L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~  136 (183)
                      +.                 ....+..++++.+++..+. .++.+|||||+|+      +..+|+.|   ||+...|+.++
T Consensus        83 ~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~  161 (200)
T d1sgwa_          83 RKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLK-KKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSK  161 (200)
T ss_dssp             TTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTT-SBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTH
T ss_pred             CCcCHHHHHHHHHHhcCCccCHHHHHHHHHHcCCcccc-cccCcCCCcHHHHHHHHHHHhcCCCEEEEcCcccccCHHHH
Confidence            11                 1123456677888876654 5688999999983      47788877   99999999999


Q ss_pred             cccccceeecCcccccCCCCCCceeeeeecccceEEEE
Q 036195          137 HVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICI  174 (183)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (183)
                      ..+...+..+..+....+++++|++    +.||++..|
T Consensus       162 ~~i~~~l~~~~~~~~~~ii~~~~~l----~~~D~~~~l  195 (200)
T d1sgwa_         162 HKVLKSILEILKEKGIVIISSREEL----SYCDVNENL  195 (200)
T ss_dssp             HHHHHHHHHHHHHHSEEEEEESSCC----TTSSEEEEG
T ss_pred             HHHHHHHHHHHhCCCEEEEEEechh----hhcchhhhe
Confidence            9888888777666556666666654    679988766

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.94  E-value=6.5e-29  Score=193.80  Aligned_cols=163  Identities=13%  Similarity=0.087  Sum_probs=121.1

Q ss_pred             cccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCccccccccchheeehhhhccCCCCcccc
Q 036195            5 YRPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQKKISVCSFILIRRAYFFKLPNLKSIC   82 (183)
Q Consensus         5 ~~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~~~~~~~~~~l~~~~lg~lp~l~~l~   82 (183)
                      .+++|+++  +|++||++||+||||||||||+++|+|+++|++|+|.++|.++....    ...+ +..+++++|...++
T Consensus        30 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~----~~~l-r~~i~~v~Q~~~lf  104 (255)
T d2hyda1          30 EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFL----TGSL-RNQIGLVQQDNILF  104 (255)
T ss_dssp             SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSC----HHHH-HHTEEEECSSCCCC
T ss_pred             CCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCC----HHHh-hheeeeeeccccCC
Confidence            35789855  69999999999999999999999999999999999999999876421    1111 13455666654444


Q ss_pred             cc------------ccchHHHHHHHHcCCCC-----------ccCCCCCCCChhhhhe------ecCchhhc---ccccc
Q 036195           83 HE------------ALAFPCLERIYVHGCPS-----------LRKLPFSLESGKRNGV------LIGEEEWW---NQLEW  130 (183)
Q Consensus        83 ~~------------~~~~~~l~vLe~l~L~~-----------L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~  130 (183)
                      ..            ....+..++++.+++.+           ........|||||+|+      ++.+|+.+   |+..-
T Consensus       105 ~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~~p~ililDEpts~  184 (255)
T d2hyda1         105 SDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSA  184 (255)
T ss_dssp             SSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTT
T ss_pred             CCCHHHHHhccCcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEEeCcccc
Confidence            32            11234556666666532           1222345799999984      36677776   89999


Q ss_pred             cCcccccccccceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          131 DDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       131 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      .|+.++..+...+..+..  ..+++++||+++. ++.||||+++|
T Consensus       185 LD~~t~~~i~~~l~~l~~--~~TvI~itH~~~~-~~~~D~ii~l~  226 (255)
T d2hyda1         185 LDLESESIIQEALDVLSK--DRTTLIVAHRLST-ITHADKIVVIE  226 (255)
T ss_dssp             CCHHHHHHHHHHHHHHTT--TSEEEEECSSGGG-TTTCSEEEEEE
T ss_pred             CCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHH-HHhCCEEEEEE
Confidence            999999999998877654  4688999999985 47799999997

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=6.2e-28  Score=190.86  Aligned_cols=159  Identities=9%  Similarity=0.021  Sum_probs=105.7

Q ss_pred             cccccccc--eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcc--ccccccchheeehhhhccCCCCcc
Q 036195            5 YRPHLRYI--EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ--KKISVCSFILIRRAYFFKLPNLKS   80 (183)
Q Consensus         5 ~~~~l~~l--~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~--~~~~~~~~~~l~~~~lg~lp~l~~   80 (183)
                      .+|||+++  +|++||++||+||||||||||+++|+|+++|++|+|.++|+-.-  .....++.+..+.+.++       
T Consensus        48 g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~tv~eni~~~-------  120 (281)
T d1r0wa_          48 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENIIFG-------  120 (281)
T ss_dssp             TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCSCEEEECSSCCCCSEEHHHHHTTT-------
T ss_pred             CCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECCEEEEEeccccccCceeecccccc-------
Confidence            47899855  59999999999999999999999999999999999999885110  00000011111111111       


Q ss_pred             ccccccchHHHHHHHHcCC-------CC----ccCCCCCCCChhhhhe------ecCchhhc---ccccccCcccccccc
Q 036195           81 ICHEALAFPCLERIYVHGC-------PS----LRKLPFSLESGKRNGV------LIGEEEWW---NQLEWDDEATKHVFS  140 (183)
Q Consensus        81 l~~~~~~~~~l~vLe~l~L-------~~----L~~~~~~~LSgGqk~~------i~~~~~w~---~~l~~~d~~~~~~~~  140 (183)
                        ......+...+++...+       +.    .......+|||||+|+      ++.+|+.+   ||....|+.++..+.
T Consensus       121 --~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~  198 (281)
T d1r0wa_         121 --VSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVF  198 (281)
T ss_dssp             --SCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHH
T ss_pred             --ccccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHHHHH
Confidence              01112233333333332       22    2334556799999983      47788876   889999988777665


Q ss_pred             c-ceeecCcccccCCCCCCceeeeeecccceEEEEe
Q 036195          141 S-KLIITTPQTVISIPQPSYTYEATIRPRYELICID  175 (183)
Q Consensus       141 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (183)
                      . ++....  ...+++++||+++. ++.||||++++
T Consensus       199 ~~~~~~~~--~~~tvi~itH~~~~-l~~aDrI~vl~  231 (281)
T d1r0wa_         199 ESCVCKLM--ANKTRILVTSKMEH-LRKADKILILH  231 (281)
T ss_dssp             HHCCCCCT--TTSEEEEECSCHHH-HHTCSEEEEEE
T ss_pred             HHHHHHhh--CCCEEEEEechHHH-HHhCCEEEEEE
Confidence            4 343332  36788999999975 57899999997

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.03  E-value=3.3e-11  Score=86.76  Aligned_cols=36  Identities=31%  Similarity=0.369  Sum_probs=33.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCc
Q 036195           20 IGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSL   55 (183)
Q Consensus        20 ~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~   55 (183)
                      ++|+||||||||||+++|+|.++|+.|.+.+.+.+.
T Consensus         3 i~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~   38 (178)
T d1ye8a1           3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRD   38 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC-
T ss_pred             EEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcch
Confidence            789999999999999999999999999999987654

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=98.15  E-value=3.8e-07  Score=64.02  Aligned_cols=32  Identities=22%  Similarity=0.374  Sum_probs=25.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEE
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAI   50 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~   50 (183)
                      +++|+|++|||||||++.|..-++...-.+.+
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l~~~g~~v~v   35 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPALCARGIRPGL   35 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence            78999999999999999998765544334433

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=4.4e-07  Score=64.14  Aligned_cols=36  Identities=25%  Similarity=0.344  Sum_probs=30.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVS   54 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~   54 (183)
                      .+.|+||+|+|||||++.++..+....+.+.+.+.+
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~   38 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTE   38 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECC
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEec
Confidence            578999999999999999999998777776655443

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.05  E-value=1.1e-06  Score=63.02  Aligned_cols=26  Identities=31%  Similarity=0.505  Sum_probs=23.2

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHhcCCC
Q 036195           17 VKIIGLYGVRGVGKSTLIKQLNDMFS   42 (183)
Q Consensus        17 Ge~~~liGpNGaGKSTLl~~i~gl~~   42 (183)
                      |.++.|+||+||||||+++.|..-.+
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~~   27 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERIP   27 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence            78999999999999999999876653

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.02  E-value=1.3e-06  Score=67.34  Aligned_cols=70  Identities=16%  Similarity=0.111  Sum_probs=40.5

Q ss_pred             CCCCCChhhhh-e-e--------cCchhh--ccccc-ccCcccccccccceeecCcccccCCCCCCceeeeeecccceEE
Q 036195          106 PFSLESGKRNG-V-L--------IGEEEW--WNQLE-WDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYELI  172 (183)
Q Consensus       106 ~~~~LSgGqk~-~-i--------~~~~~w--~~~l~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (183)
                      ....+|.|++. . +        ...+.+  +|+.+ -.+|.....+..++.....  ...+++|||.-.+ ++.+|+++
T Consensus       216 ~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~--~~QviitTHsp~~-~~~~d~~~  292 (308)
T d1e69a_         216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK--HTQFIVITHNKIV-MEAADLLH  292 (308)
T ss_dssp             BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT--TSEEEEECCCTTG-GGGCSEEE
T ss_pred             hhhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc--CCEEEEEECCHHH-HHhcccEE
Confidence            45678999876 1 1        111222  23332 2344445555555554433  3568899999654 47779999


Q ss_pred             EEeeCC
Q 036195          173 CIDVDD  178 (183)
Q Consensus       173 ~~~~~~  178 (183)
                      .+...+
T Consensus       293 ~v~~~~  298 (308)
T d1e69a_         293 GVTMVN  298 (308)
T ss_dssp             EEEESS
T ss_pred             EEEEeC
Confidence            887653

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.01  E-value=1.8e-06  Score=64.42  Aligned_cols=35  Identities=29%  Similarity=0.353  Sum_probs=26.6

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEE
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAI   50 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~   50 (183)
                      +|...+++|++|+|||||++.|.+-..-..|+|.-
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~  128 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSE  128 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTCCCC------
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcchhhhhccCccc
Confidence            68999999999999999999999877666777753

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.99  E-value=2e-06  Score=60.52  Aligned_cols=26  Identities=38%  Similarity=0.517  Sum_probs=23.9

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .|+++.|.||+||||||+.+.|+.-+
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~l   28 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLP   28 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999999998765

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.96  E-value=1.2e-06  Score=61.92  Aligned_cols=32  Identities=16%  Similarity=0.252  Sum_probs=25.2

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEE
Q 036195           18 KIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFA   49 (183)
Q Consensus        18 e~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~   49 (183)
                      .+++|+|++|||||||++.|...++...-+|-
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~   33 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVG   33 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEE
Confidence            37899999999999999988877665443443

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=97.91  E-value=1.9e-07  Score=66.90  Aligned_cols=27  Identities=30%  Similarity=0.393  Sum_probs=22.4

Q ss_pred             ecCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           14 DDGVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      +.+| ++.|+|||||||||+|.+|.-++
T Consensus        22 f~~~-~tvi~G~NGsGKStil~Ai~~~L   48 (222)
T d1qhla_          22 LDEL-VTTLSGGNGAGKSTTMAAFVTAL   48 (222)
T ss_dssp             HHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred             cCCC-eEEEECCCCCCHHHHHHHHHHHh
Confidence            4444 88899999999999999997554

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.90  E-value=3e-06  Score=67.58  Aligned_cols=69  Identities=9%  Similarity=-0.060  Sum_probs=43.4

Q ss_pred             CCCCCCChhhhh--ee---------cCchhh-c-ccccccCcccccccccceeecCcccccCCCCCCceeeeeecccceE
Q 036195          105 LPFSLESGKRNG--VL---------IGEEEW-W-NQLEWDDEATKHVFSSKLIITTPQTVISIPQPSYTYEATIRPRYEL  171 (183)
Q Consensus       105 ~~~~~LSgGqk~--~i---------~~~~~w-~-~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (183)
                      .++..+||||+.  .+         ...|-. + |+-.-.|+..+..+..++..+... ...++++||+-. |+..+|+.
T Consensus       328 ~~~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~-~~Q~I~iTH~~~-~~~~ad~~  405 (427)
T d1w1wa_         328 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNP-DLQFIVISLKNT-MFEKSDAL  405 (427)
T ss_dssp             CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBT-TBEEEEECSCHH-HHTTCSEE
T ss_pred             hhhhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCC-CCEEEEEeCCHH-HHHhcccE
Confidence            345678999985  11         112212 2 444555666666777776544322 346899999876 77888999


Q ss_pred             EEEe
Q 036195          172 ICID  175 (183)
Q Consensus       172 ~~~~  175 (183)
                      |++-
T Consensus       406 ~~V~  409 (427)
T d1w1wa_         406 VGVY  409 (427)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9874

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.89  E-value=3.5e-06  Score=59.12  Aligned_cols=27  Identities=22%  Similarity=0.181  Sum_probs=24.3

Q ss_pred             cCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           15 DGVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .+|-++.|+|++||||||+.+.|+--+
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~L   30 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVTL   30 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            478999999999999999999998655

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.89  E-value=3.6e-06  Score=58.98  Aligned_cols=27  Identities=30%  Similarity=0.453  Sum_probs=24.4

Q ss_pred             cCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           15 DGVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      +.+.++.|.||+||||||+.+.|+.-+
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l   30 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQL   30 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            567899999999999999999998865

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.81  E-value=5.1e-06  Score=58.46  Aligned_cols=24  Identities=33%  Similarity=0.632  Sum_probs=21.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           18 KIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        18 e~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      ..++|+||.|||||||.+.|+..+
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~~   31 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAVF   31 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            468999999999999999999865

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.80  E-value=1.9e-06  Score=64.52  Aligned_cols=35  Identities=23%  Similarity=0.301  Sum_probs=22.8

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEE
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAI   50 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~   50 (183)
                      +|.+..++|++|+|||||++.|.+-..-..|.|.-
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~  130 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISE  130 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred             ccceEEEECCCCccHHHHHHhhccHhHhhhccccc
Confidence            67889999999999999999999877666777753

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.74  E-value=9.2e-06  Score=56.79  Aligned_cols=26  Identities=27%  Similarity=0.478  Sum_probs=23.6

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHhcCCC
Q 036195           17 VKIIGLYGVRGVGKSTLIKQLNDMFS   42 (183)
Q Consensus        17 Ge~~~liGpNGaGKSTLl~~i~gl~~   42 (183)
                      ..++.|.|++||||||+.+.|+..+.
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~   28 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence            56899999999999999999999874

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.73  E-value=5.3e-06  Score=58.54  Aligned_cols=32  Identities=25%  Similarity=0.367  Sum_probs=26.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEE
Q 036195           18 KIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFA   49 (183)
Q Consensus        18 e~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~   49 (183)
                      .+++|.|+.||||||+.+.|+-.+......+.
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~   33 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYK   33 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCCeE
Confidence            58999999999999999999877655544443

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.73  E-value=7.9e-06  Score=58.32  Aligned_cols=25  Identities=32%  Similarity=0.652  Sum_probs=22.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMFSD   43 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~~p   43 (183)
                      ++||.||+|||||||.+.|.-.+..
T Consensus        24 iIgI~G~~GSGKSTla~~L~~~l~~   48 (198)
T d1rz3a_          24 VLGIDGLSRSGKTTLANQLSQTLRE   48 (198)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcc
Confidence            7999999999999999999876543

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.73  E-value=9.2e-06  Score=59.62  Aligned_cols=26  Identities=27%  Similarity=0.253  Sum_probs=22.6

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .|.++.|+||+|+|||||++.|.--.
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~~~   26 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLKTQ   26 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhhC
Confidence            48899999999999999998886543

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.73  E-value=8.9e-06  Score=55.89  Aligned_cols=34  Identities=29%  Similarity=0.304  Sum_probs=24.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecC
Q 036195           18 KIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVS   54 (183)
Q Consensus        18 e~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~   54 (183)
                      +++.|.||+||||||+.+.|..   ...|.+.+...+
T Consensus         3 klIii~G~pGsGKTTla~~L~~---~~~~~~~~~~d~   36 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIA---KNPGFYNINRDD   36 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH---HSTTEEEECHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH---hCCCCEEechHH
Confidence            4788999999999999997643   223556665443

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.72  E-value=1e-05  Score=56.62  Aligned_cols=27  Identities=19%  Similarity=0.249  Sum_probs=23.4

Q ss_pred             cCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           15 DGVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      ++|-.+.|.||+||||||+.+.|+--+
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~l   29 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAEL   29 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence            356689999999999999999998765

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.68  E-value=1e-05  Score=55.66  Aligned_cols=23  Identities=43%  Similarity=0.472  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .+.|+||+||||||+.+.|+--+
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L   26 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQL   26 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            47789999999999999998765

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.66  E-value=1.2e-05  Score=55.82  Aligned_cols=33  Identities=33%  Similarity=0.338  Sum_probs=25.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEec
Q 036195           18 KIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAV   53 (183)
Q Consensus        18 e~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~   53 (183)
                      .++.|.||+||||||+.+.|+.-+.   +.+.+.+.
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~d   35 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLD---NSAYIEGD   35 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSS---SEEEEEHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcC---CCEEEehH
Confidence            4788999999999999999987653   34555543

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.63  E-value=1.4e-05  Score=59.06  Aligned_cols=23  Identities=30%  Similarity=0.551  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      +++|+|+.|||||||++.|....
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~   24 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYL   24 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Confidence            68999999999999999997543

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.63  E-value=1.3e-05  Score=55.85  Aligned_cols=22  Identities=50%  Similarity=0.540  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q 036195           20 IGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        20 ~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      +.|+||+||||||+.+.|+--+
T Consensus         7 I~i~G~pGsGKTTia~~La~~l   28 (173)
T d1rkba_           7 ILLTGTPGVGKTTLGKELASKS   28 (173)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            6799999999999999997543

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=9.3e-06  Score=57.91  Aligned_cols=26  Identities=27%  Similarity=0.386  Sum_probs=23.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      +|-++.|+|++||||||+.+.|+-.+
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l   43 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYL   43 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            57799999999999999999998755

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.61  E-value=1.4e-05  Score=57.51  Aligned_cols=23  Identities=39%  Similarity=0.446  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++|+|+.|||||||++.|.|.-
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g~~   47 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLINRK   47 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred             EEEEECCCCCCHHHHHHHhcCCC
Confidence            49999999999999999999853

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.56  E-value=1.8e-05  Score=56.80  Aligned_cols=22  Identities=45%  Similarity=0.644  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q 036195           20 IGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        20 ~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      +.|+||+|||||||++.|+.-.
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~   25 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            6799999999999999886543

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.54  E-value=2.3e-05  Score=55.08  Aligned_cols=23  Identities=35%  Similarity=0.388  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++|+|+.|+|||||++.|+|-.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~   24 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999999854

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.53  E-value=1.9e-05  Score=55.92  Aligned_cols=22  Identities=45%  Similarity=0.486  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      -++|+|+.|+|||||++.|.|-
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999985

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.52  E-value=1.4e-05  Score=56.97  Aligned_cols=21  Identities=43%  Similarity=0.708  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 036195           20 IGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        20 ~~liGpNGaGKSTLl~~i~gl   40 (183)
                      +||+|+.++|||||++.|+|-
T Consensus         4 VaiiG~~nvGKSSLin~L~~~   24 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSSA   24 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEEE
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            799999999999999999764

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=2.4e-05  Score=57.05  Aligned_cols=23  Identities=26%  Similarity=0.544  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      ++||.|+.||||||+.+.|+-.+
T Consensus         4 iIgI~G~~gSGKSTla~~L~~~l   26 (213)
T d1uj2a_           4 LIGVSGGTASGKSSVCAKIVQLL   26 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            78999999999999999887665

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.49  E-value=2.6e-05  Score=61.12  Aligned_cols=38  Identities=24%  Similarity=0.254  Sum_probs=32.0

Q ss_pred             cCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEe
Q 036195           15 DGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYA   52 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g   52 (183)
                      +.+.-+.|.||.|||||||+++|++.++|..=-|++.+
T Consensus       164 ~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivtiEd  201 (323)
T d1g6oa_         164 AIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIED  201 (323)
T ss_dssp             HHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEES
T ss_pred             HhCCCEEEEeeccccchHHHHHHhhhcccccceeeccc
Confidence            44556889999999999999999999988776677754

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.48  E-value=2.7e-05  Score=56.13  Aligned_cols=21  Identities=48%  Similarity=0.620  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 036195           20 IGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        20 ~~liGpNGaGKSTLl~~i~gl   40 (183)
                      +.|+||+|||||||++.|+-.
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~   23 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQE   23 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            679999999999999988643

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.46  E-value=3.5e-05  Score=55.23  Aligned_cols=26  Identities=23%  Similarity=0.300  Sum_probs=22.1

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      +..++.|+||.||||||+.+.|+--+
T Consensus         5 kp~iI~i~G~pGSGKsT~a~~La~~~   30 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            34589999999999999999998643

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.45  E-value=3.3e-05  Score=54.10  Aligned_cols=22  Identities=41%  Similarity=0.546  Sum_probs=20.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q 036195           20 IGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        20 ~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      +.|+|++||||||+.+.|+-.+
T Consensus         3 I~liG~~GsGKsTi~k~La~~l   24 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDL   24 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6789999999999999998776

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.45  E-value=3.5e-05  Score=54.21  Aligned_cols=22  Identities=41%  Similarity=0.582  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      +++|+|..|+|||||++.|.|-
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999974

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=3.7e-05  Score=54.98  Aligned_cols=23  Identities=30%  Similarity=0.486  Sum_probs=20.0

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcC
Q 036195           18 KIIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        18 e~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      ..+.|+||+|+|||||++.|..-
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHh
Confidence            46889999999999999988743

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.43  E-value=3.8e-05  Score=54.34  Aligned_cols=22  Identities=36%  Similarity=0.601  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      +++|+|+.|+|||||++.++|-
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            7999999999999999999986

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.43  E-value=2.4e-05  Score=54.92  Aligned_cols=23  Identities=30%  Similarity=0.457  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++|+|++|||||||++.+.+-.
T Consensus        15 kI~lvG~~~vGKTsLl~~l~~~~   37 (186)
T d1f6ba_          15 KLVFLGLDNAGKTTLLHMLKDDR   37 (186)
T ss_dssp             EEEEEEETTSSHHHHHHHHSCC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            67899999999999999998864

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.43  E-value=3.3e-05  Score=52.89  Aligned_cols=23  Identities=26%  Similarity=0.405  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++|+|++|+|||||++.+.+-.
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~   24 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDR   24 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            46799999999999999999853

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.41  E-value=3.7e-05  Score=54.53  Aligned_cols=22  Identities=32%  Similarity=0.477  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      .+||+|+.|+|||||++.|+|-
T Consensus        10 kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2          10 KVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            5899999999999999999875

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.41  E-value=3.8e-05  Score=55.34  Aligned_cols=22  Identities=27%  Similarity=0.359  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      .++|+|+.|||||||++.|.+-
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999875

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.41  E-value=4.2e-05  Score=54.93  Aligned_cols=33  Identities=27%  Similarity=0.343  Sum_probs=26.6

Q ss_pred             cCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEE
Q 036195           15 DGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIY   51 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~   51 (183)
                      .+-.++.|+||.||||||+.+.|+--+    |-+.+.
T Consensus         6 ~~~~iI~i~GppGSGKsT~a~~La~~~----g~~~is   38 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQCEKLVKDY----SFVHLS   38 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHHS----SCEEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHh----CCeEEe
Confidence            445689999999999999999998866    445554

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.40  E-value=3.7e-05  Score=55.28  Aligned_cols=28  Identities=29%  Similarity=0.323  Sum_probs=24.5

Q ss_pred             ecCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           14 DDGVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      +..+.++.|+||.||||||+.+.|+--+
T Consensus         5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~   32 (194)
T d3adka_           5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY   32 (194)
T ss_dssp             HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            4567899999999999999999998754

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.39  E-value=2.6e-05  Score=55.22  Aligned_cols=22  Identities=32%  Similarity=0.600  Sum_probs=20.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q 036195           20 IGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        20 ~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      +||+|..++|||||++.|+|-.
T Consensus         4 VaivG~~nvGKSTLin~L~~~~   25 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRAH   25 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSSC
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            8999999999999999998763

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.39  E-value=3.9e-05  Score=56.30  Aligned_cols=36  Identities=28%  Similarity=0.528  Sum_probs=26.6

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEE
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIY   51 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~   51 (183)
                      ++.+++++||+|+||||++-=|+..+.-..-+|.+-
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~li   40 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFC   40 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence            567999999999999999766676655444445443

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=97.37  E-value=4.3e-05  Score=52.71  Aligned_cols=22  Identities=32%  Similarity=0.462  Sum_probs=19.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q 036195           20 IGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        20 ~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      ++|+|..|||||||++.+.+-.
T Consensus         8 I~ivG~~~vGKSSLi~~~~~~~   29 (169)
T d1upta_           8 ILILGLDGAGKTTILYRLQVGE   29 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            8899999999999999987763

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=97.36  E-value=4.6e-05  Score=52.23  Aligned_cols=22  Identities=27%  Similarity=0.338  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q 036195           20 IGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        20 ~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      +.|+|+.|+|||||++.+++-.
T Consensus         3 ivlvG~~~vGKSsLi~~l~~~~   24 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKLGE   24 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            6799999999999999987653

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.35  E-value=5.2e-05  Score=53.41  Aligned_cols=24  Identities=33%  Similarity=0.614  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMFS   42 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~~   42 (183)
                      ++.|.|++||||||+.+.|+..+.
T Consensus         3 iivi~G~~GsGKTT~~~~La~~L~   26 (194)
T d1nksa_           3 IGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            677899999999999999998764

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=97.34  E-value=5.8e-05  Score=52.15  Aligned_cols=24  Identities=25%  Similarity=0.282  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           18 KIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        18 e~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      =-++|+|+.|+|||||++.|+|--
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~   25 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGRE   25 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            357899999999999999999764

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=5.8e-05  Score=53.98  Aligned_cols=23  Identities=22%  Similarity=0.436  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      ++.|+||.||||||..+.|+--+
T Consensus         3 iI~i~GppGSGKsT~a~~La~~~   25 (194)
T d1teva_           3 VVFVLGGPGAGKGTQCARIVEKY   25 (194)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68899999999999999998644

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.33  E-value=4.7e-05  Score=53.56  Aligned_cols=23  Identities=30%  Similarity=0.457  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .+.|+|++||||||+-+.++--+
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~~L   26 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELARAL   26 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            35689999999999999997544

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.33  E-value=3.9e-05  Score=60.15  Aligned_cols=36  Identities=25%  Similarity=0.422  Sum_probs=26.5

Q ss_pred             cCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEE
Q 036195           15 DGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAI   50 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~   50 (183)
                      ...-++||.||.|||||||+..++..+....-+|-+
T Consensus        52 ~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vav   87 (327)
T d2p67a1          52 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAV   87 (327)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceee
Confidence            346689999999999999999998654333323433

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.28  E-value=6.5e-05  Score=52.53  Aligned_cols=22  Identities=36%  Similarity=0.522  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q 036195           20 IGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        20 ~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      +.|+|+.||||||+-+.++--+
T Consensus         4 IvliG~~G~GKSTig~~La~~l   25 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKAL   25 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            5688999999999999998665

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.28  E-value=9.6e-05  Score=52.38  Aligned_cols=39  Identities=21%  Similarity=0.216  Sum_probs=28.6

Q ss_pred             eecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCc
Q 036195           13 EDDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSL   55 (183)
Q Consensus        13 ~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~   55 (183)
                      .-.+-+++-++|++||||||+.+.++-    ..|.+.++..++
T Consensus        10 ~~~~p~liil~G~pGsGKST~a~~l~~----~~~~~~i~~D~~   48 (172)
T d1yj5a2          10 LSPNPEVVVAVGFPGAGKSTFIQEHLV----SAGYVHVNRDTL   48 (172)
T ss_dssp             SCSSCCEEEEECCTTSSHHHHHHHHTG----GGTCEEEEHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHH----hcCCEEEchHHH
Confidence            345667999999999999999988753    245566665433

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.28  E-value=6.3e-05  Score=56.16  Aligned_cols=37  Identities=19%  Similarity=0.168  Sum_probs=27.6

Q ss_pred             ecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEe
Q 036195           14 DDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYA   52 (183)
Q Consensus        14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g   52 (183)
                      .+....+.|.||+|||||||.+.|++-+..  +-+.++.
T Consensus        29 ~~~P~~ilL~GpPGtGKT~la~~la~~~~~--~~~~i~~   65 (273)
T d1gvnb_          29 VESPTAFLLGGQPGSGKTSLRSAIFEETQG--NVIVIDN   65 (273)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHHHTTT--CCEEECT
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhhc--ceEEEec
Confidence            344456889999999999999999998743  3444543

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.28  E-value=7.3e-05  Score=52.69  Aligned_cols=22  Identities=27%  Similarity=0.534  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q 036195           20 IGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        20 ~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      +.|+||.||||||+.+.|+--+
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            6799999999999999996654

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.27  E-value=6.4e-05  Score=53.65  Aligned_cols=23  Identities=17%  Similarity=0.300  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .+.|+||.||||||+.+.|+--+
T Consensus         5 ~I~i~GppGsGKsT~a~~La~~~   27 (189)
T d1zaka1           5 KVMISGAPASGKGTQCELIKTKY   27 (189)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            36799999999999999997554

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=97.26  E-value=7.5e-05  Score=54.10  Aligned_cols=30  Identities=30%  Similarity=0.387  Sum_probs=23.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC---CCCCcEE
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF---SDMSHKF   48 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~---~p~~G~I   48 (183)
                      +++|.||.||||||+-+.|+--+   .-++|.+
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~gl~~iStGdL   37 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAI   37 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEECHHHH
Confidence            89999999999999999998554   3344544

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=97.26  E-value=7.1e-05  Score=53.44  Aligned_cols=22  Identities=45%  Similarity=0.613  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      ++||.|+.||||||+.+.+.-+
T Consensus         5 IIgitG~~gSGKstva~~l~~~   26 (191)
T d1uf9a_           5 IIGITGNIGSGKSTVAALLRSW   26 (191)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHC
Confidence            7899999999999999998643

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=9e-05  Score=52.80  Aligned_cols=26  Identities=19%  Similarity=0.258  Sum_probs=23.2

Q ss_pred             ecCccEEEEEcCCCCcHHHHHHHHhc
Q 036195           14 DDGVKIIGLYGVRGVGKSTLIKQLND   39 (183)
Q Consensus        14 i~~Ge~~~liGpNGaGKSTLl~~i~g   39 (183)
                      +.+|+++-|.||+|+|||||..-++.
T Consensus        20 i~~G~v~~i~G~~GsGKT~l~l~la~   45 (242)
T d1n0wa_          20 IETGSITEMFGEFRTGKTQICHTLAV   45 (242)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence            88999999999999999999766654

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.24  E-value=9.8e-05  Score=54.75  Aligned_cols=27  Identities=26%  Similarity=0.338  Sum_probs=22.2

Q ss_pred             cceecCccEEEEEcCCCCcHHHHHHHHh
Q 036195           11 YIEDDGVKIIGLYGVRGVGKSTLIKQLN   38 (183)
Q Consensus        11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~   38 (183)
                      ++.+.. +++-|.|||.+||||+||.++
T Consensus        30 di~~~~-~~~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          30 DLEMAH-ELVLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             EEEESS-CEEEEESCSSSSHHHHHHHHH
T ss_pred             eEEeCC-cEEEEECCCccccchhhhhhH
Confidence            455543 588999999999999999875

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.24  E-value=9.3e-05  Score=55.21  Aligned_cols=28  Identities=21%  Similarity=0.204  Sum_probs=22.9

Q ss_pred             cceecC-ccEEEEEcCCCCcHHHHHHHHh
Q 036195           11 YIEDDG-VKIIGLYGVRGVGKSTLIKQLN   38 (183)
Q Consensus        11 ~l~i~~-Ge~~~liGpNGaGKSTLl~~i~   38 (183)
                      ++++.+ +.++-|.|||.+||||+||.++
T Consensus        34 di~l~~~~~~~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          34 PLNLSPQRRMLIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             EEEECSSSCEEEEECCTTSSHHHHHHHHH
T ss_pred             eEEECCCceEEEEeccCchhhHHHHHHHH
Confidence            556654 4578899999999999999985

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=97.24  E-value=0.0001  Score=51.16  Aligned_cols=23  Identities=26%  Similarity=0.449  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++|+|+.|||||||++.+.+-.
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~~~   26 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNGED   26 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCC
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC
Confidence            37899999999999999998864

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.24  E-value=0.0001  Score=52.57  Aligned_cols=24  Identities=29%  Similarity=0.243  Sum_probs=21.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHhc
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQLND   39 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i~g   39 (183)
                      +|=.+.|+||.||||||+.+.|+-
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHH
Confidence            566778999999999999999994

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.23  E-value=8.7e-05  Score=53.28  Aligned_cols=24  Identities=25%  Similarity=0.462  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMFS   42 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~~   42 (183)
                      ++.++|.+||||||+.+.|+..+.
T Consensus         4 li~l~GlpgsGKSTla~~L~~~l~   27 (213)
T d1bifa1           4 LIVMVGLPARGKTYISKKLTRYLN   27 (213)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            688999999999999999996553

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.19  E-value=0.00011  Score=53.75  Aligned_cols=35  Identities=20%  Similarity=0.295  Sum_probs=25.1

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEE
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAI   50 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~   50 (183)
                      ...++.++||+|+||||++--|+..+.-..-+|.+
T Consensus         9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~l   43 (207)
T d1ls1a2           9 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLL   43 (207)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence            45689999999999999977777655433333433

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.19  E-value=9.8e-05  Score=53.72  Aligned_cols=23  Identities=35%  Similarity=0.436  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      +++|-||.||||||+.+.|+--+
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~l   27 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKDF   27 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            57889999999999999998755

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.19  E-value=0.0001  Score=52.19  Aligned_cols=23  Identities=30%  Similarity=0.511  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .+.|+||.||||||+.+.|+--+
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            36799999999999999998665

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.17  E-value=0.00012  Score=53.76  Aligned_cols=35  Identities=31%  Similarity=0.447  Sum_probs=23.6

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEE
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAI   50 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~   50 (183)
                      +-.+++++||+|+||||.+--|+-.+.-..-+|.+
T Consensus        10 ~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~l   44 (213)
T d1vmaa2          10 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVL   44 (213)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEE
Confidence            44589999999999999865555444333334433

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=0.00012  Score=53.41  Aligned_cols=28  Identities=32%  Similarity=0.356  Sum_probs=24.6

Q ss_pred             cCccEEEEEcCCCCcHHHHHHHHhcCCC
Q 036195           15 DGVKIIGLYGVRGVGKSTLIKQLNDMFS   42 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~~   42 (183)
                      ++|-+++|-|+-||||||+.+.|..-+.
T Consensus         1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~   28 (209)
T d1nn5a_           1 RRGALIVLEGVDRAGKSTQSRKLVEALC   28 (209)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4788999999999999999999877654

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=97.13  E-value=0.0001  Score=55.53  Aligned_cols=23  Identities=30%  Similarity=0.374  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .++|+|..|+|||||+|.|.|-.
T Consensus        34 ~I~LvG~tg~GKSSliN~ilg~~   56 (257)
T d1h65a_          34 TILVMGKGGVGKSSTVNSIIGER   56 (257)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            68899999999999999999863

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.12  E-value=0.00012  Score=53.81  Aligned_cols=34  Identities=32%  Similarity=0.480  Sum_probs=24.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEE
Q 036195           18 KIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIY   51 (183)
Q Consensus        18 e~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~   51 (183)
                      .+++++||+|+||||.+--|+-.++-..-+|.+-
T Consensus        10 ~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~li   43 (211)
T d2qy9a2          10 FVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLA   43 (211)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEE
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence            5899999999999999766676555333445543

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=97.11  E-value=0.00012  Score=51.85  Aligned_cols=23  Identities=35%  Similarity=0.579  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      -+||+|+..||||||++.|++..
T Consensus         7 nIaiiG~~naGKSTL~n~L~~~~   29 (179)
T d1wb1a4           7 NLGIFGHIDHGKTTLSKVLTEIA   29 (179)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTTC
T ss_pred             EEEEEeCCCCcHHHHHHHHHHhc
Confidence            38999999999999999999753

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=97.11  E-value=0.00012  Score=51.13  Aligned_cols=23  Identities=22%  Similarity=0.365  Sum_probs=20.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcC
Q 036195           18 KIIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        18 e~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      =.+.|+|..|||||||++.+.+-
T Consensus        16 ~kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          16 HKVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            35889999999999999999885

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.11  E-value=0.00015  Score=52.63  Aligned_cols=26  Identities=27%  Similarity=0.386  Sum_probs=23.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      +|.+++|-|+-||||||+++.|.-.+
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L   26 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETL   26 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            58899999999999999999988654

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=97.10  E-value=8e-05  Score=52.27  Aligned_cols=31  Identities=19%  Similarity=0.246  Sum_probs=23.7

Q ss_pred             cceecCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      ++--+..=.++|+|+.++|||||++.|.+-.
T Consensus        10 ~~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~   40 (188)
T d1puia_          10 HLPSDTGIEVAFAGRSNAGKSSALNTLTNQK   40 (188)
T ss_dssp             GSSCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred             HCCCccCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3333344469999999999999999998863

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.09  E-value=0.00014  Score=51.31  Aligned_cols=23  Identities=26%  Similarity=0.290  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .+.|+||.||||||..+.|+--+
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~   24 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKY   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            36789999999999999997543

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.09  E-value=0.00012  Score=52.78  Aligned_cols=22  Identities=23%  Similarity=0.250  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      -++|+|+.|+|||||++.+.+-
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999999874

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.08  E-value=3.3e-05  Score=53.39  Aligned_cols=21  Identities=38%  Similarity=0.533  Sum_probs=19.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 036195           20 IGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        20 ~~liGpNGaGKSTLl~~i~gl   40 (183)
                      ++|+|+.++|||||++.|+|-
T Consensus         3 I~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           3 MVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999999885

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.07  E-value=0.00012  Score=52.39  Aligned_cols=27  Identities=19%  Similarity=0.226  Sum_probs=23.4

Q ss_pred             cCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           15 DGVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .+.=+++|-|+.||||||+++.|+..+
T Consensus         7 ~kp~~I~ieG~~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1           7 TQPFTVLIEGNIGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHh
Confidence            344589999999999999999998766

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=97.06  E-value=0.00015  Score=52.55  Aligned_cols=21  Identities=43%  Similarity=0.707  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 036195           19 IIGLYGVRGVGKSTLIKQLND   39 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~g   39 (183)
                      ++||.|+.||||||+.+++.-
T Consensus         4 iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           4 IVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            789999999999999998753

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=97.05  E-value=8.3e-05  Score=57.72  Aligned_cols=24  Identities=42%  Similarity=0.577  Sum_probs=22.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMFS   42 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~~   42 (183)
                      ++||-|++||||||+.+.|..++.
T Consensus        82 iIGIaG~sgSGKSTla~~L~~lL~  105 (308)
T d1sq5a_          82 IISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             EEEEeCCCCCCCcHHHHHHHHHHh
Confidence            999999999999999999988764

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.04  E-value=0.00018  Score=50.79  Aligned_cols=23  Identities=30%  Similarity=0.407  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .+.|+||.||||||+.+.|+--+
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            36799999999999999997554

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.02  E-value=9.4e-05  Score=54.94  Aligned_cols=30  Identities=27%  Similarity=0.314  Sum_probs=24.1

Q ss_pred             ceecCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           12 IEDDGVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        12 l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      +.-..+.++.|.||.|+|||||++.++--.
T Consensus        24 l~~~~~~~i~i~G~~G~GKTsLl~~~~~~~   53 (283)
T d2fnaa2          24 LKGLRAPITLVLGLRRTGKSSIIKIGINEL   53 (283)
T ss_dssp             HHHTCSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             HHhccCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence            333567899999999999999999876543

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=97.01  E-value=0.00017  Score=50.15  Aligned_cols=22  Identities=23%  Similarity=0.372  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      -++++|+.|+|||||++.+.+-
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3679999999999999977654

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.01  E-value=0.00021  Score=52.94  Aligned_cols=25  Identities=28%  Similarity=0.489  Sum_probs=22.3

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCCC
Q 036195           18 KIIGLYGVRGVGKSTLIKQLNDMFS   42 (183)
Q Consensus        18 e~~~liGpNGaGKSTLl~~i~gl~~   42 (183)
                      ..+-|.||+|+||||++++++.-..
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~~~   77 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQELG   77 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHH
Confidence            4788999999999999999998764

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.01  E-value=0.00018  Score=51.62  Aligned_cols=23  Identities=26%  Similarity=0.510  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .+.|+||.||||||+.+.|+--+
T Consensus         8 rIiliG~PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1           8 RAAIMGAPGSGKGTVSSRITKHF   30 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHB
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            57799999999999999998754

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.01  E-value=0.00017  Score=52.86  Aligned_cols=24  Identities=29%  Similarity=0.310  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           18 KIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        18 e~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      ..+-|.||+|+||||++++++.-+
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak~l   69 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALAREL   69 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHH
Confidence            357799999999999999998754

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.00013  Score=53.60  Aligned_cols=27  Identities=30%  Similarity=0.454  Sum_probs=23.9

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHhcCCC
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQLNDMFS   42 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i~gl~~   42 (183)
                      ++.+++|-|+-||||||+++.|+..+.
T Consensus         1 ~~k~I~ieG~dGsGKST~~~~L~~~l~   27 (241)
T d1p5zb_           1 RIKKISIEGNIAAGKSTFVNILKQLCE   27 (241)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence            357899999999999999999998763

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=96.99  E-value=0.00019  Score=52.70  Aligned_cols=38  Identities=26%  Similarity=0.365  Sum_probs=22.5

Q ss_pred             cCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEe
Q 036195           15 DGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYA   52 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g   52 (183)
                      +...+++++||+|+||||++-=|+-.++-...+|-+-.
T Consensus        10 k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit   47 (211)
T d1j8yf2          10 KIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVG   47 (211)
T ss_dssp             SSSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEE
Confidence            34568999999999999996666655543344554433

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.99  E-value=0.00021  Score=50.49  Aligned_cols=22  Identities=36%  Similarity=0.549  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q 036195           20 IGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        20 ~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      +.|+||.||||||+.+.|+--+
T Consensus         5 Ivl~G~pGSGKtT~a~~La~~~   26 (180)
T d1akya1           5 MVLIGPPGAGKGTQAPNLQERF   26 (180)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            5689999999999999998654

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.97  E-value=0.00024  Score=51.98  Aligned_cols=32  Identities=25%  Similarity=0.258  Sum_probs=26.9

Q ss_pred             cCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcE
Q 036195           15 DGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHK   47 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~   47 (183)
                      .+|.+++|-|+-||||||+.+.|+--+.. .|.
T Consensus         1 ~kGk~I~iEG~DGsGKST~~~~L~~~L~~-~~~   32 (214)
T d1tmka_           1 GRGKLILIEGLDRTGKTTQCNILYKKLQP-NCK   32 (214)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHTTT-SEE
T ss_pred             CCeEEEEEECCCCCcHHHHHHHHHHHHHh-CCE
Confidence            37899999999999999999999877653 443

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.96  E-value=0.00025  Score=51.74  Aligned_cols=45  Identities=22%  Similarity=0.313  Sum_probs=32.5

Q ss_pred             ceecCccEEEEEcCCCCcHHHHHHHHhcCCCC--CCcEEEEEecCcc
Q 036195           12 IEDDGVKIIGLYGVRGVGKSTLIKQLNDMFSD--MSHKFAIYAVSLQ   56 (183)
Q Consensus        12 l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p--~~G~I~~~g~~~~   56 (183)
                      +.-++|-++-|.|.+||||||+.+.|.--+..  ..-.+.++|..+.
T Consensus        19 ~~~~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR   65 (208)
T d1m7ga_          19 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR   65 (208)
T ss_dssp             HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred             HhCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHH
Confidence            34478899999999999999999998754321  2234667776544

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.94  E-value=0.00022  Score=55.57  Aligned_cols=26  Identities=42%  Similarity=0.661  Sum_probs=22.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      ..-++||.||.|||||||+..+...+
T Consensus        50 ~~~~igitG~pGaGKSTli~~l~~~~   75 (323)
T d2qm8a1          50 RAIRVGITGVPGVGKSTTIDALGSLL   75 (323)
T ss_dssp             CSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CceEEeeeCCCCCCHHHHHHHHHHHH
Confidence            44579999999999999999988653

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.00029  Score=48.91  Aligned_cols=22  Identities=41%  Similarity=0.460  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      .++++|+.|+|||||++.+.+-
T Consensus         5 Ki~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3789999999999999988764

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.91  E-value=0.00026  Score=51.39  Aligned_cols=22  Identities=41%  Similarity=0.629  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      ++||+|..||||||..+++..+
T Consensus         5 iIgitG~igSGKStv~~~l~~~   26 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFADL   26 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEECCCcCCHHHHHHHHHHC
Confidence            7899999999999999987643

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.90  E-value=0.00029  Score=56.44  Aligned_cols=23  Identities=30%  Similarity=0.476  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      -++|+|..|+|||||+|.|.|.-
T Consensus        58 ~Iai~G~~n~GKSSLiNaL~G~~   80 (400)
T d1tq4a_          58 NVAVTGETGSGKSSFINTLRGIG   80 (400)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            38999999999999999999853

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.90  E-value=0.00024  Score=49.60  Aligned_cols=21  Identities=29%  Similarity=0.428  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 036195           20 IGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        20 ~~liGpNGaGKSTLl~~i~gl   40 (183)
                      ++++|+.|+|||||++.+.+-
T Consensus         8 i~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            789999999999999987653

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=96.89  E-value=0.00021  Score=49.93  Aligned_cols=22  Identities=45%  Similarity=0.584  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      .++++|+.|+|||||++.+.+-
T Consensus        18 kI~vvG~~~vGKSsLi~~l~~~   39 (176)
T d1fzqa_          18 RILLLGLDNAGKTTLLKQLASE   39 (176)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999998764

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=96.88  E-value=0.00011  Score=51.86  Aligned_cols=38  Identities=18%  Similarity=0.336  Sum_probs=26.9

Q ss_pred             cccccccccc-eecCccEEEEEcCCCCcHHHHHHHHhcC
Q 036195            3 HLYRPHLRYI-EDDGVKIIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus         3 ~~~~~~l~~l-~i~~Ge~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      |.+..+++.+ .-++-=-+.++|+.|+|||||++.+.+-
T Consensus         2 ~~~~~~~~~l~~~~k~~KI~lvG~~~vGKTsLi~~l~~~   40 (182)
T d1moza_           2 NIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIG   40 (182)
T ss_dssp             HHHHHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred             hhHHHHHHHHhCCCceEEEEEECCCCCCHHHHHHHHhcC
Confidence            3455566544 3344446889999999999999987654

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.88  E-value=0.00036  Score=48.74  Aligned_cols=21  Identities=29%  Similarity=0.529  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 036195           20 IGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        20 ~~liGpNGaGKSTLl~~i~gl   40 (183)
                      ++|+|+.|+|||||++.+.+-
T Consensus         5 i~~vG~~~vGKSsLi~~~~~~   25 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVND   25 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            789999999999999988753

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.87  E-value=0.00036  Score=48.80  Aligned_cols=30  Identities=23%  Similarity=0.334  Sum_probs=26.5

Q ss_pred             eecCccEEEEEcCCCCcHHHHHHHHhcCCC
Q 036195           13 EDDGVKIIGLYGVRGVGKSTLIKQLNDMFS   42 (183)
Q Consensus        13 ~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~   42 (183)
                      ..++|.++.|.|+=|||||||.|.++.-+-
T Consensus        29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg   58 (158)
T d1htwa_          29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIG   58 (158)
T ss_dssp             CCSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             cCCCCeEEEEecCCCccHHHHHHHHHhhcc
Confidence            457999999999999999999999887663

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.87  E-value=0.00026  Score=49.71  Aligned_cols=21  Identities=38%  Similarity=0.596  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 036195           20 IGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        20 ~~liGpNGaGKSTLl~~i~gl   40 (183)
                      ++++|+.|+|||||++.+.+-
T Consensus         7 i~vvG~~~vGKTsLi~~~~~~   27 (175)
T d2f9la1           7 VVLIGDSGVGKSNLLSRFTRN   27 (175)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999987654

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=96.85  E-value=0.0002  Score=55.00  Aligned_cols=34  Identities=12%  Similarity=0.047  Sum_probs=29.3

Q ss_pred             ccccce-ecCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195            8 HLRYIE-DDGVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus         8 ~l~~l~-i~~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      ++|.|. +.+|+..+|+|+.|+|||||+..|+.-.
T Consensus        33 ~ID~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~   67 (289)
T d1xpua3          33 VLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI   67 (289)
T ss_dssp             HHHHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             eeeecccccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence            456554 8999999999999999999999988754

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.85  E-value=0.00027  Score=51.65  Aligned_cols=22  Identities=32%  Similarity=0.555  Sum_probs=19.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q 036195           20 IGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        20 ~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      +-|.||+|+||||++++++.-+
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHHH
Confidence            7799999999999999998753

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.83  E-value=0.00063  Score=47.25  Aligned_cols=21  Identities=33%  Similarity=0.700  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 036195           19 IIGLYGVRGVGKSTLIKQLND   39 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~g   39 (183)
                      -++++|..|+|||||++.+.+
T Consensus         4 Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            368999999999999987765

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.82  E-value=0.00014  Score=55.81  Aligned_cols=25  Identities=32%  Similarity=0.616  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMFSD   43 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~~p   43 (183)
                      ++||.|++||||||+.+.|.-++..
T Consensus         6 IIgIaG~SGSGKTTva~~l~~i~~~   30 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQIFRR   30 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHhh
Confidence            8999999999999999998877653

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.80  E-value=0.00032  Score=51.55  Aligned_cols=34  Identities=24%  Similarity=0.264  Sum_probs=25.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVS   54 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~   54 (183)
                      .+-+.||.|+||||+.++++.-+....+  .+++.+
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~~~~~~~~--~~~~~~   70 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIASELQTNIH--VTSGPV   70 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHHHTCCEE--EEETTT
T ss_pred             eEEEECCCCCcHHHHHHHHHhccCCCcc--cccCcc
Confidence            4678999999999999999987655433  344443

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.79  E-value=0.00046  Score=47.75  Aligned_cols=20  Identities=30%  Similarity=0.488  Sum_probs=17.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 036195           20 IGLYGVRGVGKSTLIKQLND   39 (183)
Q Consensus        20 ~~liGpNGaGKSTLl~~i~g   39 (183)
                      ++++|+.|+|||||++.+.+
T Consensus         5 v~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999987664

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.78  E-value=0.00042  Score=48.01  Aligned_cols=22  Identities=41%  Similarity=0.466  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q 036195           20 IGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        20 ~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      ++++|.+|+|||||++.+++-.
T Consensus         5 i~vvG~~~vGKTSli~~l~~~~   26 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVEDK   26 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            6799999999999999877643

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.77  E-value=0.00036  Score=51.37  Aligned_cols=22  Identities=27%  Similarity=0.517  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      ++||+|...||||||++.|.+-
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCccHHHHHHHHHhh
Confidence            5999999999999999999874

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.76  E-value=0.00048  Score=51.87  Aligned_cols=31  Identities=23%  Similarity=0.199  Sum_probs=23.3

Q ss_pred             cceecCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           11 YIEDDGVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        11 ~l~i~~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .+.+....-+-+.||.|+|||++.+.|+...
T Consensus        39 ~~g~~~~~~iLL~GppGtGKT~la~~iA~~~   69 (256)
T d1lv7a_          39 KLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA   69 (256)
T ss_dssp             ----CCCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             HcCCCCCCeEEeeCCCCCCccHHHHHHHHHc
Confidence            3445555667799999999999999999865

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.76  E-value=0.00039  Score=50.60  Aligned_cols=25  Identities=32%  Similarity=0.360  Sum_probs=22.6

Q ss_pred             ecCccEEEEEcCCCCcHHHHHHHHh
Q 036195           14 DDGVKIIGLYGVRGVGKSTLIKQLN   38 (183)
Q Consensus        14 i~~Ge~~~liGpNGaGKSTLl~~i~   38 (183)
                      +.+|+++-|.||.|+|||||..-++
T Consensus        31 i~~G~~~li~G~pGsGKT~l~lq~~   55 (251)
T d1szpa2          31 VETGSITELFGEFRTGKSQLCHTLA   55 (251)
T ss_dssp             EESSSEEEEEESTTSSHHHHHHHHT
T ss_pred             CcCCeEEEEEcCCCCCHHHHHHHHH
Confidence            7899999999999999999976654

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.00038  Score=48.67  Aligned_cols=22  Identities=41%  Similarity=0.484  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q 036195           20 IGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        20 ~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      +.++|+.|+|||||++.+.+-.
T Consensus         6 ivvvG~~~vGKTsli~r~~~~~   27 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTDKR   27 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHhcCC
Confidence            6799999999999999876543

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.73  E-value=0.00038  Score=51.22  Aligned_cols=24  Identities=29%  Similarity=0.515  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMFS   42 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~~   42 (183)
                      .+-+.||.|+||||+.+++++-..
T Consensus        37 ~~Ll~GPpG~GKTtla~~la~~~~   60 (239)
T d1ixsb2          37 HLLLFGPPGLGKTTLAHVIAHELG   60 (239)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC
Confidence            466899999999999999998653

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.72  E-value=0.00043  Score=48.91  Aligned_cols=22  Identities=32%  Similarity=0.431  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q 036195           20 IGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        20 ~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      ++|+|+.|+|||||++.+.+-.
T Consensus         8 i~ivG~~~vGKTsLi~~l~~~~   29 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTDNK   29 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHCSC
T ss_pred             EEEECCCCcCHHHHHHHHhcCC
Confidence            7899999999999999887643

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.70  E-value=0.00047  Score=49.41  Aligned_cols=23  Identities=43%  Similarity=0.826  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      +++|-|.-||||||+++.|...+
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l   24 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAF   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            58899999999999999988655

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.70  E-value=0.00039  Score=53.65  Aligned_cols=38  Identities=24%  Similarity=0.343  Sum_probs=28.0

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCc
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSL   55 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~   55 (183)
                      ++..+.++||+|+|||+|.|+|+....  .--+.++...+
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~~~--~~~~~i~~s~~   85 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKLAN--APFIKVEATKF   85 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHT--CCEEEEEGGGG
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhccc--cchhccccccc
Confidence            345667999999999999999998753  22456665444

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.69  E-value=0.00041  Score=48.36  Aligned_cols=31  Identities=26%  Similarity=0.258  Sum_probs=23.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC-----CCCCCcEEE
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDM-----FSDMSHKFA   49 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl-----~~p~~G~I~   49 (183)
                      -+.|+|.+|+|||||++.+.+-     ..|+.|...
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~   42 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY   42 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCcccCcccccce
Confidence            4889999999999999876552     245666543

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.66  E-value=0.00055  Score=49.48  Aligned_cols=23  Identities=22%  Similarity=0.105  Sum_probs=21.2

Q ss_pred             ecCccEEEEEcCCCCcHHHHHHH
Q 036195           14 DDGVKIIGLYGVRGVGKSTLIKQ   36 (183)
Q Consensus        14 i~~Ge~~~liGpNGaGKSTLl~~   36 (183)
                      +++|+++-|.|++|+|||||..-
T Consensus        23 i~~G~~~~I~G~~G~GKT~la~~   45 (242)
T d1tf7a1          23 LPIGRSTLVSGTSGTGKTLFSIQ   45 (242)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHH
Confidence            88999999999999999999753

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=96.66  E-value=0.00059  Score=51.20  Aligned_cols=26  Identities=31%  Similarity=0.406  Sum_probs=23.3

Q ss_pred             ecCccEEEEEcCCCCcHHHHHHHHhc
Q 036195           14 DDGVKIIGLYGVRGVGKSTLIKQLND   39 (183)
Q Consensus        14 i~~Ge~~~liGpNGaGKSTLl~~i~g   39 (183)
                      +.+|+++.|.|++|+|||||+.-++-
T Consensus        32 ~~~G~l~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          32 ARGGEVIMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             BCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            78999999999999999999777663

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.66  E-value=0.00051  Score=47.80  Aligned_cols=22  Identities=36%  Similarity=0.536  Sum_probs=19.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q 036195           20 IGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        20 ~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      ++|+|+.|+|||||++.+.+..
T Consensus         4 i~lvG~~~vGKTsLi~~~~~~~   25 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGGVE   25 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC-
T ss_pred             EEEECCCCcCHHHHHHHHhCCc
Confidence            6899999999999999998864

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.65  E-value=0.00062  Score=47.15  Aligned_cols=21  Identities=43%  Similarity=0.623  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 036195           19 IIGLYGVRGVGKSTLIKQLND   39 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~g   39 (183)
                      -++|+|+.|+|||||++.+.+
T Consensus         6 Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           6 KIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            588999999999999998765

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.65  E-value=0.00062  Score=47.40  Aligned_cols=21  Identities=38%  Similarity=0.632  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 036195           20 IGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        20 ~~liGpNGaGKSTLl~~i~gl   40 (183)
                      +.|+|+.|+|||||++.+.+-
T Consensus         8 i~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           8 IVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988763

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.64  E-value=0.00049  Score=48.56  Aligned_cols=21  Identities=33%  Similarity=0.577  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 036195           20 IGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        20 ~~liGpNGaGKSTLl~~i~gl   40 (183)
                      ++++|..|+|||||++.+.+-
T Consensus         5 v~vvG~~~vGKSSLi~~l~~~   25 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVNK   25 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            689999999999999877753

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.64  E-value=0.00061  Score=50.25  Aligned_cols=29  Identities=24%  Similarity=0.484  Sum_probs=24.5

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCCCCCCc
Q 036195           18 KIIGLYGVRGVGKSTLIKQLNDMFSDMSH   46 (183)
Q Consensus        18 e~~~liGpNGaGKSTLl~~i~gl~~p~~G   46 (183)
                      ..+.|.||.|+||||+++.++..++...+
T Consensus        44 ~~lll~GppGtGKT~l~~~l~~~l~~~~~   72 (276)
T d1fnna2          44 PRATLLGRPGTGKTVTLRKLWELYKDKTT   72 (276)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred             CceEEECCCCCCHHHHHHHHHHHHhcccC
Confidence            47889999999999999999988764444

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.63  E-value=0.00059  Score=49.98  Aligned_cols=27  Identities=26%  Similarity=0.245  Sum_probs=22.8

Q ss_pred             ecCccEEEEEcCCCCcHHHHHHHHhcC
Q 036195           14 DDGVKIIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        14 i~~Ge~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      +.+|.++.|.||+|+|||||..-++--
T Consensus        23 i~~gsl~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          23 FFKDSIILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             EESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence            789999999999999999996554443

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.00067  Score=46.79  Aligned_cols=21  Identities=29%  Similarity=0.444  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 036195           20 IGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        20 ~~liGpNGaGKSTLl~~i~gl   40 (183)
                      ++|+|..|+|||||++.+.+-
T Consensus         3 v~vvG~~~vGKTsLi~r~~~~   23 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMYD   23 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988754

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.61  E-value=0.00069  Score=49.59  Aligned_cols=25  Identities=24%  Similarity=0.319  Sum_probs=22.8

Q ss_pred             ecCccEEEEEcCCCCcHHHHHHHHh
Q 036195           14 DDGVKIIGLYGVRGVGKSTLIKQLN   38 (183)
Q Consensus        14 i~~Ge~~~liGpNGaGKSTLl~~i~   38 (183)
                      +.+|.++-|.||+|+|||||.-.++
T Consensus        34 ip~G~~~~i~G~~GsGKT~lalq~~   58 (258)
T d1v5wa_          34 IESMAITEAFGEFRTGKTQLSHTLC   58 (258)
T ss_dssp             BCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred             CcCCEEEEEECCCCCCHHHHHHHHH
Confidence            8999999999999999999976665

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.60  E-value=0.00068  Score=47.34  Aligned_cols=20  Identities=40%  Similarity=0.590  Sum_probs=17.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 036195           20 IGLYGVRGVGKSTLIKQLND   39 (183)
Q Consensus        20 ~~liGpNGaGKSTLl~~i~g   39 (183)
                      ++++|++|+|||||++.+..
T Consensus         9 I~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78999999999999976654

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.60  E-value=0.00076  Score=46.67  Aligned_cols=22  Identities=36%  Similarity=0.416  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      .++|+|..|+|||||++.+.+-
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999888764

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.60  E-value=0.00062  Score=49.92  Aligned_cols=27  Identities=22%  Similarity=0.263  Sum_probs=22.5

Q ss_pred             ecCccEEEEEcCCCCcHHHHHH-HHhcC
Q 036195           14 DDGVKIIGLYGVRGVGKSTLIK-QLNDM   40 (183)
Q Consensus        14 i~~Ge~~~liGpNGaGKSTLl~-~i~gl   40 (183)
                      +.+|+++-|.||+|+|||||.- .+...
T Consensus        33 lp~G~~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          33 IETQAITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             ccCCEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            7899999999999999999955 44333

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.59  E-value=0.00065  Score=49.34  Aligned_cols=25  Identities=24%  Similarity=0.369  Sum_probs=22.6

Q ss_pred             ecCccEEEEEcCCCCcHHHHHHHHh
Q 036195           14 DDGVKIIGLYGVRGVGKSTLIKQLN   38 (183)
Q Consensus        14 i~~Ge~~~liGpNGaGKSTLl~~i~   38 (183)
                      +.+|+++-|.|++|+|||||.--++
T Consensus        31 l~~G~l~~i~G~~G~GKT~~~l~~a   55 (258)
T d2i1qa2          31 LESQSVTEFAGVFGSGKTQIMHQSC   55 (258)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHH
T ss_pred             ccCCeEEEEEeCCCCCHHHHHHHHH
Confidence            8899999999999999999966665

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.59  E-value=0.00078  Score=46.63  Aligned_cols=21  Identities=38%  Similarity=0.545  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 036195           20 IGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        20 ~~liGpNGaGKSTLl~~i~gl   40 (183)
                      +.|+|..|+|||||++.+.+-
T Consensus         7 ivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999887654

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.56  E-value=0.00084  Score=46.23  Aligned_cols=21  Identities=29%  Similarity=0.286  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 036195           20 IGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        20 ~~liGpNGaGKSTLl~~i~gl   40 (183)
                      +.++|..|+|||||++.+..-
T Consensus         5 v~liG~~~vGKTsLl~~~~~~   25 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCAG   25 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            679999999999999987653

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.55  E-value=0.00092  Score=46.67  Aligned_cols=22  Identities=41%  Similarity=0.594  Sum_probs=19.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q 036195           20 IGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        20 ~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      +.++|..|+|||||++.+.+..
T Consensus         6 v~lvG~~~vGKTsLi~~~~~~~   27 (172)
T d2g3ya1           6 VVLIGEQGVGKSTLANIFAGVH   27 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHHCCC
T ss_pred             EEEECCCCcCHHHHHHHHHhCc
Confidence            6799999999999999998764

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.54  E-value=0.00063  Score=47.17  Aligned_cols=21  Identities=33%  Similarity=0.555  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 036195           20 IGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        20 ~~liGpNGaGKSTLl~~i~gl   40 (183)
                      ++|+|..|+|||||++-+..-
T Consensus         7 i~lvG~~~vGKTsli~rl~~~   27 (167)
T d1z0ja1           7 VCLLGDTGVGKSSIMWRFVED   27 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999987753

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.52  E-value=0.00065  Score=49.45  Aligned_cols=22  Identities=27%  Similarity=0.501  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q 036195           20 IGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        20 ~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      +-+.||+|+||||+.++++.-+
T Consensus        39 ~ll~Gp~G~GKTt~a~~la~~l   60 (224)
T d1sxjb2          39 MIISGMPGIGKTTSVHCLAHEL   60 (224)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCchhhHHHHHHHH
Confidence            6689999999999999987643

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.51  E-value=0.00069  Score=46.97  Aligned_cols=20  Identities=30%  Similarity=0.486  Sum_probs=17.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 036195           20 IGLYGVRGVGKSTLIKQLND   39 (183)
Q Consensus        20 ~~liGpNGaGKSTLl~~i~g   39 (183)
                      +.|+|..|+|||||++.+.+
T Consensus         6 ivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           6 VVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68999999999999997764

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.51  E-value=0.00063  Score=50.80  Aligned_cols=24  Identities=21%  Similarity=0.205  Sum_probs=20.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           18 KIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        18 e~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .-+-|.||.|+|||++.+.|+.-.
T Consensus        41 ~~vLL~GppGtGKT~la~alA~~~   64 (246)
T d1d2na_          41 VSVLLEGPPHSGKTALAAKIAEES   64 (246)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHhhcc
Confidence            346799999999999999999764

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.49  E-value=0.00056  Score=50.34  Aligned_cols=21  Identities=38%  Similarity=0.504  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 036195           20 IGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        20 ~~liGpNGaGKSTLl~~i~gl   40 (183)
                      +-|.||+|+||||+.+.++--
T Consensus        36 lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          36 LLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             EEEECSTTSSHHHHHHTHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            669999999999999999864

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.48  E-value=0.00094  Score=46.68  Aligned_cols=22  Identities=18%  Similarity=0.179  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      -+.|+|++|+|||||++.+..-
T Consensus         4 KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3679999999999999887754

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.46  E-value=0.00082  Score=51.38  Aligned_cols=22  Identities=32%  Similarity=0.326  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      ++||-|+.|||||||.+.|.-.
T Consensus        29 iIGi~G~qGSGKSTl~~~l~~~   50 (286)
T d1odfa_          29 FIFFSGPQGSGKSFTSIQIYNH   50 (286)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHH
Confidence            8999999999999998877544

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.45  E-value=0.0011  Score=46.44  Aligned_cols=21  Identities=43%  Similarity=0.637  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 036195           20 IGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        20 ~~liGpNGaGKSTLl~~i~gl   40 (183)
                      ++++|..|+|||||++.+.+-
T Consensus        10 i~vvG~~~vGKTsli~~l~~~   30 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFTDD   30 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988764

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=96.45  E-value=0.00048  Score=48.07  Aligned_cols=23  Identities=26%  Similarity=0.323  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      -+.++|++|+|||||++.+.+-.
T Consensus        14 kIvlvG~~~vGKTSli~rl~~~~   36 (173)
T d1e0sa_          14 RILMLGLDAAGKTTILYKLKLGQ   36 (173)
T ss_dssp             EEEEEEETTSSHHHHHHHTTCCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47799999999999999987544

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.45  E-value=0.00098  Score=47.45  Aligned_cols=21  Identities=43%  Similarity=0.607  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 036195           20 IGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        20 ~~liGpNGaGKSTLl~~i~gl   40 (183)
                      ++|+|+.|+|||||++.+.+-
T Consensus         9 ivvvG~~~vGKTsli~~l~~~   29 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSDD   29 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHhhC
Confidence            789999999999999977653

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.41  E-value=0.00079  Score=47.02  Aligned_cols=22  Identities=36%  Similarity=0.391  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      -+.|+|..|+|||||++-+..-
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~~   29 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQS   29 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999876653

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.40  E-value=0.00079  Score=46.91  Aligned_cols=21  Identities=33%  Similarity=0.480  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 036195           20 IGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        20 ~~liGpNGaGKSTLl~~i~gl   40 (183)
                      ++++|..|+|||||++.+.+-
T Consensus         8 I~lvG~~~vGKTsll~~~~~~   28 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIEK   28 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999987643

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.39  E-value=0.00088  Score=46.53  Aligned_cols=21  Identities=33%  Similarity=0.672  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 036195           20 IGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        20 ~~liGpNGaGKSTLl~~i~gl   40 (183)
                      +.++|+.|+|||||++-+.+-
T Consensus         5 i~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            679999999999999988753

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.39  E-value=0.0012  Score=45.69  Aligned_cols=22  Identities=27%  Similarity=0.400  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      -++++|..|+|||||++.+.+-
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3679999999999999976654

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.38  E-value=0.0012  Score=45.72  Aligned_cols=22  Identities=32%  Similarity=0.404  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      -+.++|..|+|||||++-+..-
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3679999999999999888744

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.38  E-value=0.00067  Score=51.16  Aligned_cols=30  Identities=27%  Similarity=0.330  Sum_probs=24.8

Q ss_pred             eecCccEEEEEcCCCCcHHHHHHHHhcCCC
Q 036195           13 EDDGVKIIGLYGVRGVGKSTLIKQLNDMFS   42 (183)
Q Consensus        13 ~i~~Ge~~~liGpNGaGKSTLl~~i~gl~~   42 (183)
                      .+....-+-|.||+|+|||+|.+.+++...
T Consensus        37 g~~~~~giLL~Gp~GtGKT~l~~ala~~~~   66 (265)
T d1r7ra3          37 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ   66 (265)
T ss_dssp             CCCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred             CCCCCCeEEEECCCCCcchhHHHHHHHHhC
Confidence            344555677999999999999999999874

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=96.36  E-value=0.0011  Score=49.99  Aligned_cols=41  Identities=24%  Similarity=0.155  Sum_probs=29.3

Q ss_pred             ecCccEEEEEcCCCCcHHHHHHHHh-cCCCCCCcEEEEEecC
Q 036195           14 DDGVKIIGLYGVRGVGKSTLIKQLN-DMFSDMSHKFAIYAVS   54 (183)
Q Consensus        14 i~~Ge~~~liGpNGaGKSTLl~~i~-gl~~p~~G~I~~~g~~   54 (183)
                      +..|.++-|.||+|+|||||.-.++ ...++..--++++.+.
T Consensus        51 i~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~   92 (263)
T d1u94a1          51 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH   92 (263)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             ccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEcccc
Confidence            5788999999999999999954444 4445544445666553

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.35  E-value=0.00092  Score=48.56  Aligned_cols=22  Identities=32%  Similarity=0.527  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q 036195           20 IGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        20 ~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      +-|.||.|+||||++++++.-+
T Consensus        38 lLl~Gp~G~GKttl~~~la~~l   59 (227)
T d1sxjc2          38 LLFYGPPGTGKTSTIVALAREI   59 (227)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCChhHHHHHHHHHh
Confidence            6699999999999999998753

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.34  E-value=0.00055  Score=47.78  Aligned_cols=22  Identities=32%  Similarity=0.377  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      -++++|+.|+|||||++.++.-
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~~   26 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLTG   26 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC--
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999876553

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.34  E-value=0.0013  Score=46.09  Aligned_cols=31  Identities=26%  Similarity=0.294  Sum_probs=25.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCcEEE
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMFSDMSHKFA   49 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~   49 (183)
                      -+.|+|..|+|||||++-+.....|+.|...
T Consensus         4 KivllG~~~vGKTsl~~r~~~~~~~t~~~~~   34 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMKIIHEAGTGIVE   34 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHSCCCSEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCccEEE
Confidence            3679999999999999998777778887543

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.33  E-value=0.00096  Score=46.95  Aligned_cols=22  Identities=23%  Similarity=0.226  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      -++|+|..|+|||||++.+..-
T Consensus         7 KivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999876653

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=96.32  E-value=0.0014  Score=52.23  Aligned_cols=38  Identities=21%  Similarity=0.179  Sum_probs=28.3

Q ss_pred             cCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcE-EEEEe
Q 036195           15 DGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHK-FAIYA   52 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~-I~~~g   52 (183)
                      .+...+-+.||.||||||++..+...+.....+ +++.+
T Consensus       156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEd  194 (401)
T d1p9ra_         156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVED  194 (401)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEES
T ss_pred             hhhceEEEEcCCCCCccHHHHHHhhhhcCCCceEEEecc
Confidence            566699999999999999999988865333334 45543

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.30  E-value=0.00099  Score=49.75  Aligned_cols=25  Identities=32%  Similarity=0.375  Sum_probs=21.7

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCCC
Q 036195           18 KIIGLYGVRGVGKSTLIKQLNDMFS   42 (183)
Q Consensus        18 e~~~liGpNGaGKSTLl~~i~gl~~   42 (183)
                      .-+-+.||.|+|||+|.+.|+.-..
T Consensus        43 ~giLl~GppGtGKT~la~aia~~~~   67 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAGEAR   67 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             ceEEEecCCCCChhHHHHHHHHHcC
Confidence            3477999999999999999998653

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.30  E-value=0.001  Score=46.13  Aligned_cols=20  Identities=40%  Similarity=0.682  Sum_probs=17.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 036195           20 IGLYGVRGVGKSTLIKQLND   39 (183)
Q Consensus        20 ~~liGpNGaGKSTLl~~i~g   39 (183)
                      ++|+|+.|+|||||++.+.+
T Consensus         9 i~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999997654

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.29  E-value=0.0008  Score=50.46  Aligned_cols=25  Identities=28%  Similarity=0.432  Sum_probs=21.4

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           17 VKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        17 Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      -.-+-|.||.|+|||++.+.++...
T Consensus        38 ~~giLL~GppGtGKT~l~~ala~~~   62 (258)
T d1e32a2          38 PRGILLYGPPGTGKTLIARAVANET   62 (258)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CceeEEecCCCCCchHHHHHHHHHh
Confidence            3347799999999999999999964

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.27  E-value=0.00065  Score=50.37  Aligned_cols=23  Identities=39%  Similarity=0.471  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      ++.|.||.|+||||+++.++..+
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHH
Confidence            34556999999999999999764

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.26  E-value=0.0012  Score=45.99  Aligned_cols=21  Identities=38%  Similarity=0.433  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 036195           19 IIGLYGVRGVGKSTLIKQLND   39 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~g   39 (183)
                      .+.++|..|+|||||++.+.+
T Consensus         6 Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           6 KLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            367899999999999998765

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.26  E-value=0.0013  Score=48.26  Aligned_cols=22  Identities=36%  Similarity=0.415  Sum_probs=19.6

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhc
Q 036195           18 KIIGLYGVRGVGKSTLIKQLND   39 (183)
Q Consensus        18 e~~~liGpNGaGKSTLl~~i~g   39 (183)
                      .++||.|+-||||||..+.|..
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999854

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.23  E-value=0.0013  Score=48.03  Aligned_cols=29  Identities=31%  Similarity=0.210  Sum_probs=22.7

Q ss_pred             EEEEEcCCCCcHHHHHHHH-hcCCCCCCcE
Q 036195           19 IIGLYGVRGVGKSTLIKQL-NDMFSDMSHK   47 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i-~gl~~p~~G~   47 (183)
                      -+.|+|.+|+|||||++-+ .+-..||-|-
T Consensus         8 KilllG~~~vGKTsll~~~~~~~~~pTiG~   37 (221)
T d1azta2           8 RLLLLGAGESGKSTIVKQMRILHVVLTSGI   37 (221)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCCCSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCcCCCCCe
Confidence            4679999999999998865 4445677773

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=96.23  E-value=0.0018  Score=49.17  Aligned_cols=45  Identities=9%  Similarity=-0.103  Sum_probs=32.9

Q ss_pred             cccccce-ecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEE
Q 036195            7 PHLRYIE-DDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIY   51 (183)
Q Consensus         7 ~~l~~l~-i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~   51 (183)
                      +++|.|. +.+|+..+|+|+.|+|||+|+..+.--...+...+.+-
T Consensus        56 ~~ID~l~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~~~~~~v~V~~  101 (276)
T d1fx0a3          56 IAIDAMIPVGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYV  101 (276)
T ss_dssp             TTTTTTSCCBTTCBCBEEESSSSSHHHHHHHHHHTCCTTTCEEEEE
T ss_pred             eEEeccccccCCceEeeccCCCCChHHHHHHHHhhhcccCceeeee
Confidence            3566664 89999999999999999999876554444455444443

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.21  E-value=0.0012  Score=46.33  Aligned_cols=22  Identities=32%  Similarity=0.440  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      -++++|..|+|||||++.+.+-
T Consensus         7 ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           7 RLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999977664

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.18  E-value=0.0013  Score=45.44  Aligned_cols=21  Identities=38%  Similarity=0.479  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 036195           20 IGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        20 ~~liGpNGaGKSTLl~~i~gl   40 (183)
                      +.++|..|+|||||++-+..-
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           6 LVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            689999999999999987654

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=96.16  E-value=0.00063  Score=52.68  Aligned_cols=26  Identities=31%  Similarity=0.580  Sum_probs=23.1

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCCCC
Q 036195           18 KIIGLYGVRGVGKSTLIKQLNDMFSD   43 (183)
Q Consensus        18 e~~~liGpNGaGKSTLl~~i~gl~~p   43 (183)
                      .-+-|+||.|+|||||+|.++++++|
T Consensus        29 h~vLl~G~pG~GKT~lar~~~~iLp~   54 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALAALLPE   54 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred             CeEEEECCCCccHHHHHHHHHHhCCC
Confidence            45789999999999999999998865

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.15  E-value=0.0014  Score=46.24  Aligned_cols=20  Identities=25%  Similarity=0.355  Sum_probs=17.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 036195           20 IGLYGVRGVGKSTLIKQLND   39 (183)
Q Consensus        20 ~~liGpNGaGKSTLl~~i~g   39 (183)
                      +.|+|..|+|||||++.+..
T Consensus        12 i~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          12 CVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhh
Confidence            78999999999999987654

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.15  E-value=0.0008  Score=46.95  Aligned_cols=20  Identities=30%  Similarity=0.574  Sum_probs=8.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 036195           20 IGLYGVRGVGKSTLIKQLND   39 (183)
Q Consensus        20 ~~liGpNGaGKSTLl~~i~g   39 (183)
                      +.|+|..|+|||||++.+++
T Consensus         9 i~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEECCCCC-----------
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999987665

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=96.15  E-value=0.0014  Score=45.49  Aligned_cols=21  Identities=38%  Similarity=0.420  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 036195           19 IIGLYGVRGVGKSTLIKQLND   39 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~g   39 (183)
                      -+.|+|..|+|||||++.+..
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            477999999999999998764

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.14  E-value=0.0013  Score=50.06  Aligned_cols=25  Identities=24%  Similarity=0.426  Sum_probs=22.6

Q ss_pred             ccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           17 VKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        17 Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      =-+++|+||-++||||||+.+.|..
T Consensus        32 v~vvsi~G~~~sGKS~llN~l~~~~   56 (277)
T d1f5na2          32 MVVVAIVGLYRTGKSYLMNKLAGKK   56 (277)
T ss_dssp             EEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             EEEEEEECCCCCCHHHHHHHHcCCC
Confidence            4589999999999999999999864

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=96.13  E-value=0.0018  Score=45.88  Aligned_cols=24  Identities=29%  Similarity=0.094  Sum_probs=19.3

Q ss_pred             cCccEEEEEcCCCCcHHHHHHHHh
Q 036195           15 DGVKIIGLYGVRGVGKSTLIKQLN   38 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl~~i~   38 (183)
                      -.|.-+.|.|++|+||||+.-.+.
T Consensus        12 ~~g~gvl~~G~sG~GKStlal~l~   35 (176)
T d1kkma_          12 IYGLGVLITGDSGVGKSETALELV   35 (176)
T ss_dssp             ETTEEEEEECCTTSCHHHHHHHHH
T ss_pred             ECCEEEEEEeCCCCCHHHHHHHHH
Confidence            456778899999999999865543

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.13  E-value=0.0019  Score=48.98  Aligned_cols=43  Identities=26%  Similarity=0.277  Sum_probs=30.9

Q ss_pred             cccc-eecCccEEEEEcCCCCcHHHHHHHHhcC-CCCCCcEEEEE
Q 036195            9 LRYI-EDDGVKIIGLYGVRGVGKSTLIKQLNDM-FSDMSHKFAIY   51 (183)
Q Consensus         9 l~~l-~i~~Ge~~~liGpNGaGKSTLl~~i~gl-~~p~~G~I~~~   51 (183)
                      +|.| .+.+|+..+|+|+.|+|||||+..|+-- .+.+.+.+.|-
T Consensus        59 ID~l~pigkGQr~~If~~~g~GKt~l~~~i~~~~~~~~~~v~V~~  103 (276)
T d2jdid3          59 VDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA  103 (276)
T ss_dssp             HHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHHTTTCSSEEEEE
T ss_pred             eeeeccccCCCEEEeeCCCCCCHHHHHHHHHHHHHhhCCCeEEEE
Confidence            3444 3899999999999999999997766543 44445544443

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.10  E-value=0.0015  Score=46.11  Aligned_cols=28  Identities=32%  Similarity=0.331  Sum_probs=22.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC--CCCCCc
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDM--FSDMSH   46 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl--~~p~~G   46 (183)
                      -+.|+|..|+|||||++-+.-.  ..||-|
T Consensus         4 KivllG~~~vGKTsll~r~~f~~~~~pTiG   33 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG   33 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCeee
Confidence            3679999999999999987433  357888

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=96.09  E-value=0.0019  Score=45.85  Aligned_cols=23  Identities=30%  Similarity=0.144  Sum_probs=19.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHh
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQLN   38 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i~   38 (183)
                      .|.-+.|.|++|+|||||.-.+.
T Consensus        14 ~g~gvli~G~sG~GKS~lal~l~   36 (177)
T d1knxa2          14 FGVGVLLTGRSGIGKSECALDLI   36 (177)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHH
Confidence            67788999999999999976543

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.05  E-value=0.0022  Score=45.03  Aligned_cols=20  Identities=25%  Similarity=0.400  Sum_probs=17.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 036195           20 IGLYGVRGVGKSTLIKQLND   39 (183)
Q Consensus        20 ~~liGpNGaGKSTLl~~i~g   39 (183)
                      +.++|..|+|||||++.+..
T Consensus         5 ivliG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           5 IVVVGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67999999999999976554

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=96.04  E-value=0.0021  Score=45.77  Aligned_cols=23  Identities=39%  Similarity=0.583  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      -+||+|.-.+|||||++.|.|..
T Consensus         7 nIaiiGhvd~GKSTL~~~L~g~~   29 (195)
T d1kk1a3           7 NIGMVGHVDHGKTTLTKALTGVW   29 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEEEeccCCcHHHHHHHHHhhh
Confidence            37999999999999999999854

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=95.99  E-value=0.0022  Score=48.93  Aligned_cols=34  Identities=26%  Similarity=0.411  Sum_probs=27.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC------------CCCCcEEEEEe
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF------------SDMSHKFAIYA   52 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~------------~p~~G~I~~~g   52 (183)
                      -+||||..-||||||++++++--            .|.-|.|.+.+
T Consensus        12 kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d   57 (296)
T d1ni3a1          12 KTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPD   57 (296)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccc
Confidence            59999999999999999999763            33457776654

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=95.97  E-value=0.0022  Score=47.74  Aligned_cols=25  Identities=32%  Similarity=0.223  Sum_probs=21.3

Q ss_pred             ecCccEEEEEcCCCCcHHHHHHHHh
Q 036195           14 DDGVKIIGLYGVRGVGKSTLIKQLN   38 (183)
Q Consensus        14 i~~Ge~~~liGpNGaGKSTLl~~i~   38 (183)
                      +-+|+++.|.|+.|+|||||+-.|+
T Consensus        26 ~~pg~~~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          26 MVAGTVGALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             ccCCcEEEEEeCCCCCHHHHHHHHH
Confidence            3469999999999999999976654

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.96  E-value=0.0018  Score=49.64  Aligned_cols=22  Identities=36%  Similarity=0.439  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q 036195           20 IGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        20 ~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      +||+|..-+|||||+++|+|..
T Consensus         3 v~lvG~pn~GKStlfn~lt~~~   24 (319)
T d1wxqa1           3 IGVVGKPNVGKSTFFSAATLVD   24 (319)
T ss_dssp             EEEEECTTSSHHHHHHHHHC--
T ss_pred             EeEECCCCCCHHHHHHHHHCCC
Confidence            7999999999999999999874

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.93  E-value=0.0026  Score=44.94  Aligned_cols=22  Identities=23%  Similarity=0.226  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      -++++|+.|+|||||++.+..-
T Consensus         5 KvvllG~~~vGKTSli~r~~~~   26 (191)
T d2ngra_           5 KCVVVGDGAVGKTCLLISYTTN   26 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999998766543

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.83  E-value=0.0025  Score=46.47  Aligned_cols=25  Identities=32%  Similarity=0.542  Sum_probs=21.9

Q ss_pred             cEEEEEcCCCCcHHHHHHHHhcCCC
Q 036195           18 KIIGLYGVRGVGKSTLIKQLNDMFS   42 (183)
Q Consensus        18 e~~~liGpNGaGKSTLl~~i~gl~~   42 (183)
                      .+++|=|+=||||||+++.|.--+.
T Consensus         3 k~IviEG~~GsGKST~~~~L~~~l~   27 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHHh
Confidence            4789999999999999999987653

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.79  E-value=0.004  Score=46.99  Aligned_cols=41  Identities=20%  Similarity=0.118  Sum_probs=30.1

Q ss_pred             ecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEE-EEEecC
Q 036195           14 DDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKF-AIYAVS   54 (183)
Q Consensus        14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I-~~~g~~   54 (183)
                      ++.|.++-|.||+|+|||||.-.++.......|.+ +++.+.
T Consensus        57 ~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~   98 (269)
T d1mo6a1          57 LPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH   98 (269)
T ss_dssp             BCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             cccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCc
Confidence            68999999999999999999655555444445554 555543

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.78  E-value=0.002  Score=52.13  Aligned_cols=23  Identities=30%  Similarity=0.517  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      -+-++||+|+|||-|.|.|++++
T Consensus        51 NILliGPTGvGKTlLAr~LAk~l   73 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLAKLA   73 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHh
Confidence            57799999999999999999987

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.77  E-value=0.003  Score=44.38  Aligned_cols=24  Identities=29%  Similarity=0.203  Sum_probs=19.2

Q ss_pred             ecCccEEEEEcCCCCcHHHHHHHH
Q 036195           14 DDGVKIIGLYGVRGVGKSTLIKQL   37 (183)
Q Consensus        14 i~~Ge~~~liGpNGaGKSTLl~~i   37 (183)
                      .-.|.-+.|.|++|+||||+.-.+
T Consensus        12 ~~~g~gvli~G~sg~GKS~la~~l   35 (169)
T d1ko7a2          12 DVYGVGVLITGDSGIGKSETALEL   35 (169)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHH
T ss_pred             EECCEEEEEEeCCCCCHHHHHHHH
Confidence            346778889999999999986443

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=95.74  E-value=0.0041  Score=46.83  Aligned_cols=34  Identities=26%  Similarity=0.303  Sum_probs=27.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC-----------CCCCcEEEEEe
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF-----------SDMSHKFAIYA   52 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~-----------~p~~G~I~~~g   52 (183)
                      .+||||-.-+|||||+++|++--           .|.-|.|.+.+
T Consensus         4 ~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d   48 (278)
T d1jala1           4 KCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD   48 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred             eEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEeccc
Confidence            58999999999999999999653           45568776654

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.71  E-value=0.0034  Score=48.32  Aligned_cols=36  Identities=22%  Similarity=0.231  Sum_probs=27.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEec
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAV   53 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~   53 (183)
                      +..++.++||+|+|||.|.+.|+-.+.  .--|.++-.
T Consensus        51 p~~~~lf~Gp~GvGKT~lak~la~~l~--~~~i~~d~s   86 (315)
T d1r6bx3          51 PVGSFLFAGPTGVGKTEVTVQLSKALG--IELLRFDMS   86 (315)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHHHHT--CEEEEEEGG
T ss_pred             CceEEEEECCCcchhHHHHHHHHhhcc--CCeeEeccc
Confidence            344788999999999999999999863  234555543

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=95.69  E-value=0.0036  Score=47.59  Aligned_cols=26  Identities=19%  Similarity=0.198  Sum_probs=22.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC-CC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMFS-DM   44 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~~-p~   44 (183)
                      -++++|.-.||||||+++|.|.-- |.
T Consensus        26 ~ivVvG~~ssGKSSliNaLlG~~~lP~   52 (306)
T d1jwyb_          26 QIVVVGSQSSGKSSVLENIVGRDFLPR   52 (306)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSCCCCC
T ss_pred             eEEEEeCCCCCHHHHHHHHhCCCCCCC
Confidence            478999999999999999999763 44

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=95.63  E-value=0.0041  Score=46.92  Aligned_cols=40  Identities=23%  Similarity=0.146  Sum_probs=29.6

Q ss_pred             ecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcE-EEEEec
Q 036195           14 DDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHK-FAIYAV   53 (183)
Q Consensus        14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~-I~~~g~   53 (183)
                      ++.|.++-|.||+|+|||||.-.++....-..|. ++++.+
T Consensus        54 ip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE   94 (268)
T d1xp8a1          54 IPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE   94 (268)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             ccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECC
Confidence            6789999999999999999976666654433454 455544

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.61  E-value=0.0036  Score=49.23  Aligned_cols=29  Identities=21%  Similarity=0.145  Sum_probs=26.4

Q ss_pred             ecCccEEEEEcCCCCcHHHHHHHHhcCCC
Q 036195           14 DDGVKIIGLYGVRGVGKSTLIKQLNDMFS   42 (183)
Q Consensus        14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~~   42 (183)
                      +.++.++.+.||.|+||||+.+.|++.+.
T Consensus       151 ~~~~~~~~~~g~~~~gk~~~~~~~~~~~~  179 (362)
T d1svma_         151 IPKKRYWLFKGPIDSGKTTLAAALLELCG  179 (362)
T ss_dssp             CTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            57788999999999999999999999874

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.59  E-value=0.004  Score=47.06  Aligned_cols=22  Identities=23%  Similarity=0.368  Sum_probs=20.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC
Q 036195           20 IGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        20 ~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      ++++|.-.||||||+++|+|.-
T Consensus        29 ivvvG~~SsGKSsliNaLlg~~   50 (299)
T d2akab1          29 IAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             EEEEEBTTSCHHHHHHHHHTSC
T ss_pred             EEEEcCCCCCHHHHHHHHhCCC
Confidence            7899999999999999999975

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=95.58  E-value=0.0032  Score=47.52  Aligned_cols=20  Identities=40%  Similarity=0.579  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 036195           19 IIGLYGVRGVGKSTLIKQLN   38 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~   38 (183)
                      .+||+|+.|+|||||+..|.
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll   23 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALL   23 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHH
Confidence            47999999999999999883

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.54  E-value=0.0044  Score=46.69  Aligned_cols=24  Identities=29%  Similarity=0.264  Sum_probs=20.8

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHhc
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQLND   39 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i~g   39 (183)
                      +..+++|.|.-|.|||||.+.+..
T Consensus        43 ~~~~v~I~GmgGiGKTtLA~~v~~   66 (277)
T d2a5yb3          43 DSFFLFLHGRAGSGKSVIASQALS   66 (277)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            456999999999999999998753

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.47  E-value=0.0038  Score=45.01  Aligned_cols=20  Identities=35%  Similarity=0.446  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 036195           19 IIGLYGVRGVGKSTLIKQLN   38 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~   38 (183)
                      -+|++|.-+||||||+..|.
T Consensus         5 ni~iiGhvd~GKSTL~~~Ll   24 (204)
T d2c78a3           5 NVGTIGHVDHGKTTLTAALT   24 (204)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHH
Confidence            48999999999999999985

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.45  E-value=0.0038  Score=47.27  Aligned_cols=23  Identities=22%  Similarity=0.320  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHH---hcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQL---NDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i---~gl~   41 (183)
                      -+||+|+.|||||||...|   +|..
T Consensus         8 ni~i~gh~~~GKTtL~e~ll~~~g~~   33 (276)
T d2bv3a2           8 NIGIAAHIDAGKTTTTERILYYTGRI   33 (276)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHTSS
T ss_pred             EEEEEeCCCCCHHHHHHHHHHhcCcc
Confidence            5899999999999999888   4554

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.40  E-value=0.0036  Score=45.74  Aligned_cols=22  Identities=32%  Similarity=0.545  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      ++.|.|.=|||||||++-+..-
T Consensus         5 v~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEEeeCCCCCHHHHHHHHHhc
Confidence            6788999999999999998764

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.37  E-value=0.0043  Score=43.40  Aligned_cols=27  Identities=33%  Similarity=0.397  Sum_probs=21.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCC---CCCCc
Q 036195           20 IGLYGVRGVGKSTLIKQLNDMF---SDMSH   46 (183)
Q Consensus        20 ~~liGpNGaGKSTLl~~i~gl~---~p~~G   46 (183)
                      +.|+|..|+|||||++-+..-.   .||-|
T Consensus         5 iv~lG~~~vGKTsll~r~~~~~~~~~pTiG   34 (200)
T d2bcjq2           5 LLLLGTGESGKSTFIKQMRIIHGSGVPTTG   34 (200)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHTSSCCCCCS
T ss_pred             EEEECCCCCCHHHHHHHHhCCCCCCCceee
Confidence            6799999999999998875543   35555

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.92  E-value=0.0072  Score=43.78  Aligned_cols=33  Identities=24%  Similarity=0.270  Sum_probs=24.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCC-CCCcEEEEEe
Q 036195           20 IGLYGVRGVGKSTLIKQLNDMFS-DMSHKFAIYA   52 (183)
Q Consensus        20 ~~liGpNGaGKSTLl~~i~gl~~-p~~G~I~~~g   52 (183)
                      +-|.||.|+|||-|+.+++--.. .....+++..
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~   72 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSA   72 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred             EEEECCCCCcHHHHHHHHHHHhccCccceEEech
Confidence            67999999999999999886542 2334445543

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.92  E-value=0.0072  Score=44.25  Aligned_cols=23  Identities=30%  Similarity=0.495  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .+-|.||+|+||||+.++++..+
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~~l   58 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAKGL   58 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHHh
Confidence            35678999999999999987654

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=94.90  E-value=0.0066  Score=48.03  Aligned_cols=35  Identities=17%  Similarity=0.242  Sum_probs=24.0

Q ss_pred             cEEEEEcCCCCcHHHHHHH-HhcCCCCCCcEEEEEe
Q 036195           18 KIIGLYGVRGVGKSTLIKQ-LNDMFSDMSHKFAIYA   52 (183)
Q Consensus        18 e~~~liGpNGaGKSTLl~~-i~gl~~p~~G~I~~~g   52 (183)
                      ..+.|+|++|||||++++. |..++....+-|.++.
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD~   86 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDP   86 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             ceEEEEeCCCCcHHHHHHHHHHHHHhCCCCEEEEeC
Confidence            4589999999999999864 4444444444455554

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.82  E-value=0.0092  Score=42.87  Aligned_cols=24  Identities=21%  Similarity=0.369  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMFS   42 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~~   42 (183)
                      .+-+.||.|+||||+.+.++..+-
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~~l~   49 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSRYLL   49 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHHHhcc
Confidence            478899999999999999987653

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.78  E-value=0.0039  Score=47.44  Aligned_cols=31  Identities=13%  Similarity=0.046  Sum_probs=24.9

Q ss_pred             ccccc-eecCccEEEEEcCCCCcHHHHHHHHh
Q 036195            8 HLRYI-EDDGVKIIGLYGVRGVGKSTLIKQLN   38 (183)
Q Consensus         8 ~l~~l-~i~~Ge~~~liGpNGaGKSTLl~~i~   38 (183)
                      ++|.| .+.+|+..+|+|+.|+|||||+..++
T Consensus        58 aID~l~pig~GQr~~If~~~g~GKt~ll~~~~   89 (285)
T d2jdia3          58 AVDSLVPIGRGQRELIIGDRQTGKTSIAIDTI   89 (285)
T ss_dssp             HHHHHSCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred             EEecccCccCCCEEEeecCCCCChHHHHHHHH
Confidence            34444 48999999999999999999976443

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=94.77  E-value=0.014  Score=45.31  Aligned_cols=32  Identities=34%  Similarity=0.287  Sum_probs=25.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEE
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAI   50 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~   50 (183)
                      .+.|=|+=|+||||+++.|..-+....+.+.+
T Consensus         8 rI~iEG~iGsGKSTl~~~L~~~l~~~~~v~~~   39 (333)
T d1p6xa_           8 RIYLDGVYGIGKSTTGRVMASAASGGSPTLYF   39 (333)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSGGGCSSCEEEE
T ss_pred             EEEEECCccCCHHHHHHHHHHHhccCCCeEEE
Confidence            46788999999999999999987655544444

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=94.73  E-value=0.0079  Score=46.46  Aligned_cols=37  Identities=14%  Similarity=0.196  Sum_probs=26.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCc
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSL   55 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~   55 (183)
                      ++-+.||.|+|||.|.+.|++-......-+.+.+.++
T Consensus       125 ~~l~~G~pG~GKT~la~ala~~~~~~~~~~~~~~~~~  161 (321)
T d1w44a_         125 MVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEP  161 (321)
T ss_dssp             EEEEECSSSSCHHHHHHHHHHHHHTTSCCEEEEBSCS
T ss_pred             eEEEECCCCccHHHHHHHHHHHhcCCCCeEEEEhhHh
Confidence            5666899999999999999987532223356666554

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=94.58  E-value=0.011  Score=45.76  Aligned_cols=36  Identities=22%  Similarity=0.326  Sum_probs=28.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVS   54 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~   54 (183)
                      .++|=|+=||||||+++.|.-.+......+.+-.++
T Consensus         7 rI~IEG~iGsGKSTl~~~L~~~l~~~g~~v~~~~EP   42 (331)
T d1osna_           7 RIYLDGAYGIGKTTAAEEFLHHFAITPNRILLIGEP   42 (331)
T ss_dssp             EEEEEESSSSCTTHHHHHHHHTTTTSGGGEEEECCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEeCc
Confidence            478999999999999999998876555556655444

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=94.54  E-value=0.016  Score=41.29  Aligned_cols=28  Identities=25%  Similarity=0.455  Sum_probs=23.2

Q ss_pred             cCccEEEEEcCCCCcHHHHHHHHhcCCC
Q 036195           15 DGVKIIGLYGVRGVGKSTLIKQLNDMFS   42 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~~   42 (183)
                      +|.=.+||+|.=.||||||++.|.|...
T Consensus         6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~   33 (205)
T d2qn6a3           6 QPEVNIGVVGHVDHGKTTLVQAITGIWT   33 (205)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHSCCC
T ss_pred             CCCeEEEEEEccCCcHHHHHHHHHhhhc
Confidence            3444689999999999999999998653

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=94.38  E-value=0.011  Score=42.17  Aligned_cols=22  Identities=27%  Similarity=0.433  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDM   40 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl   40 (183)
                      -+|++|.-.+|||||++.|.+.
T Consensus         5 ni~iiGHvd~GKSTL~~~l~~~   26 (196)
T d1d2ea3           5 NVGTIGHVDHGKTTLTAAITKI   26 (196)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHHHH
Confidence            4899999999999999999764

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.35  E-value=0.012  Score=44.21  Aligned_cols=26  Identities=27%  Similarity=0.228  Sum_probs=21.4

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      ...-+.|+||.|+|||+++.-++..+
T Consensus        38 ~k~n~lLVG~~GvGKTalv~~la~ri   63 (268)
T d1r6bx2          38 RKNNPLLVGESGVGKTAIAEGLAWRI   63 (268)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ccCCcEEECCCCCcHHHHHHHHHHHH
Confidence            34567799999999999999888654

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.30  E-value=0.013  Score=41.90  Aligned_cols=27  Identities=26%  Similarity=0.347  Sum_probs=22.0

Q ss_pred             cCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           15 DGVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      +...-+.|+||.|.|||+++.-++..+
T Consensus        41 ~~k~n~lLvG~pGVGKTalv~~LA~ri   67 (195)
T d1jbka_          41 RTKNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cCCCCeEEEecCCcccHHHHHHHHHHH
Confidence            344567899999999999998888654

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=94.28  E-value=0.013  Score=45.04  Aligned_cols=37  Identities=24%  Similarity=0.257  Sum_probs=26.6

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHhcCCC-CCCcEEEEEe
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQLNDMFS-DMSHKFAIYA   52 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i~gl~~-p~~G~I~~~g   52 (183)
                      +.-++.++||+|+|||.+.+.|+-.+. ....-+.++.
T Consensus        52 p~~~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~   89 (315)
T d1qvra3          52 PIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDM   89 (315)
T ss_dssp             CSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECT
T ss_pred             CceEEEEECCCcchHHHHHHHHHHHhcCCCcceEEEec
Confidence            344677999999999999999998763 2233444543

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=94.17  E-value=0.012  Score=44.26  Aligned_cols=33  Identities=15%  Similarity=0.173  Sum_probs=27.5

Q ss_pred             ecCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcE
Q 036195           14 DDGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHK   47 (183)
Q Consensus        14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~   47 (183)
                      ..+--++.+.||.++||||++++|+.++ +.-|.
T Consensus       101 ~~k~n~~~l~G~~~tGKS~f~~~i~~~l-g~~~~  133 (267)
T d1u0ja_         101 FGKRNTIWLFGPATTGKTNIAEAIAHTV-PFYGC  133 (267)
T ss_dssp             STTCCEEEEECSTTSSHHHHHHHHHHHS-SCEEE
T ss_pred             CCccEEEEEEcCCCCCHHHHHHHHHHHh-cchhh
Confidence            3556689999999999999999999998 55543

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=93.82  E-value=0.017  Score=41.91  Aligned_cols=20  Identities=35%  Similarity=0.340  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 036195           19 IIGLYGVRGVGKSTLIKQLN   38 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~   38 (183)
                      -+|++|.-++|||||+..|.
T Consensus         5 Ni~viGHVd~GKTTL~~~Ll   24 (224)
T d1jnya3           5 NLIVIGHVDHGKSTLVGRLL   24 (224)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEecCCCCHHHHHHHHH
Confidence            48999999999999998873

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=93.69  E-value=0.015  Score=44.91  Aligned_cols=24  Identities=29%  Similarity=0.326  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMFS   42 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~~   42 (183)
                      .++|=|+=||||||+++.|...+.
T Consensus         6 rI~IEG~iGsGKTTl~~~La~~l~   29 (329)
T d1e2ka_           6 RVYIDGPHGMGKTTTTQLLVALGS   29 (329)
T ss_dssp             EEEECSCTTSSHHHHHHHHTC---
T ss_pred             EEEEECCcCCCHHHHHHHHHHHhC
Confidence            478899999999999999987664

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=93.60  E-value=0.02  Score=44.88  Aligned_cols=28  Identities=29%  Similarity=0.362  Sum_probs=23.1

Q ss_pred             eecCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           13 EDDGVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        13 ~i~~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      ++.++. +-++||+|+|||-|.|.|+.+.
T Consensus        65 ~~p~~n-iLfiGPTGvGKTElAk~LA~~~   92 (364)
T d1um8a_          65 ELSKSN-ILLIGPTGSGKTLMAQTLAKHL   92 (364)
T ss_dssp             TCCCCC-EEEECCTTSSHHHHHHHHHHHT
T ss_pred             cCCCcc-eeeeCCCCccHHHHHHHHHhhc
Confidence            455665 4578999999999999999875

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=93.39  E-value=0.021  Score=43.75  Aligned_cols=20  Identities=30%  Similarity=0.596  Sum_probs=17.6

Q ss_pred             cCccEEEEEcCCCCcHHHHH
Q 036195           15 DGVKIIGLYGVRGVGKSTLI   34 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl   34 (183)
                      +.|++..+.|-+|+|||||-
T Consensus        12 ~~~~~alfFGLSGTGKTTLs   31 (313)
T d2olra1          12 EKGDVAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             TTSCEEEEECSTTSSHHHHH
T ss_pred             CCCCEEEEEccCCCCcccce
Confidence            46899999999999999973

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=93.30  E-value=0.021  Score=43.83  Aligned_cols=19  Identities=32%  Similarity=0.625  Sum_probs=17.1

Q ss_pred             cCccEEEEEcCCCCcHHHH
Q 036195           15 DGVKIIGLYGVRGVGKSTL   33 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTL   33 (183)
                      +.|++..+.|.+|+|||||
T Consensus        12 ~~~~valffGLSGTGKTTL   30 (318)
T d1j3ba1          12 KEGDVAVFFGLSGTGKTTL   30 (318)
T ss_dssp             TTCCEEEEEECTTSCHHHH
T ss_pred             CCCCEEEEEccCCCCcccc
Confidence            3589999999999999997

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=93.15  E-value=0.019  Score=43.25  Aligned_cols=16  Identities=19%  Similarity=0.341  Sum_probs=13.7

Q ss_pred             EEEEEcCCCCcHHHHH
Q 036195           19 IIGLYGVRGVGKSTLI   34 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl   34 (183)
                      .+-|.|+.||||||.+
T Consensus        26 ~~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVL   41 (318)
T ss_dssp             CEEEEECTTSCHHHHH
T ss_pred             CEEEEecCCccHHHHH
Confidence            4679999999999875

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=93.10  E-value=0.02  Score=42.57  Aligned_cols=16  Identities=25%  Similarity=0.268  Sum_probs=13.6

Q ss_pred             EEEEEcCCCCcHHHHH
Q 036195           19 IIGLYGVRGVGKSTLI   34 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl   34 (183)
                      -+.|+|+.|+||||++
T Consensus        16 ~~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEEECCCTTSCHHHHH
T ss_pred             CEEEEeeCCccHHHHH
Confidence            4679999999999864

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=93.01  E-value=0.054  Score=42.12  Aligned_cols=20  Identities=30%  Similarity=0.395  Sum_probs=17.4

Q ss_pred             CccEEEEEcCCCCcHHHHHH
Q 036195           16 GVKIIGLYGVRGVGKSTLIK   35 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~   35 (183)
                      .+.++.|.||.|+||||++.
T Consensus       162 ~~~~~vI~G~pGTGKTt~i~  181 (359)
T d1w36d1         162 TRRISVISGGPGTGKTTTVA  181 (359)
T ss_dssp             TBSEEEEECCTTSTHHHHHH
T ss_pred             cCCeEEEEcCCCCCceehHH
Confidence            46799999999999999874

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=92.66  E-value=0.035  Score=40.26  Aligned_cols=19  Identities=42%  Similarity=0.322  Sum_probs=17.7

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 036195           20 IGLYGVRGVGKSTLIKQLN   38 (183)
Q Consensus        20 ~~liGpNGaGKSTLl~~i~   38 (183)
                      ++++|.-.+|||||+..|.
T Consensus        12 i~viGHVd~GKSTL~~~Ll   30 (222)
T d1zunb3          12 FLTCGNVDDGKSTLIGRLL   30 (222)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHH
Confidence            6899999999999999994

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=92.54  E-value=0.013  Score=38.31  Aligned_cols=21  Identities=19%  Similarity=-0.062  Sum_probs=17.9

Q ss_pred             ecCccEEEEEcCCCCcHHHHH
Q 036195           14 DDGVKIIGLYGVRGVGKSTLI   34 (183)
Q Consensus        14 i~~Ge~~~liGpNGaGKSTLl   34 (183)
                      +++|+.+-|.+|.|||||+..
T Consensus         4 l~~~~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           4 LKKGMTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             TSTTCEEEECCCTTSSTTTTH
T ss_pred             HHcCCcEEEEcCCCCChhHHH
Confidence            478999999999999999543

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=92.30  E-value=0.037  Score=42.49  Aligned_cols=20  Identities=30%  Similarity=0.564  Sum_probs=17.8

Q ss_pred             cCccEEEEEcCCCCcHHHHH
Q 036195           15 DGVKIIGLYGVRGVGKSTLI   34 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl   34 (183)
                      +.|++..+.|-||.|||||-
T Consensus        12 ~~gd~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          12 KQGDVTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             TTCCEEEEECCTTSSHHHHH
T ss_pred             CCCCEEEEEccCCCCcccce
Confidence            47889999999999999984

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=92.04  E-value=0.036  Score=36.40  Aligned_cols=22  Identities=27%  Similarity=0.339  Sum_probs=17.3

Q ss_pred             CccEEEEEcCCCCcHHHHHHHH
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQL   37 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i   37 (183)
                      +.++.-|.+|.|||||+++-.+
T Consensus         7 ~~~~~ll~apTGsGKT~~~~~~   28 (136)
T d1a1va1           7 SFQVAHLHAPTGSGKSTKVPAA   28 (136)
T ss_dssp             SCEEEEEECCTTSCTTTHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHH
Confidence            4566778999999999986443

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.86  E-value=0.034  Score=43.07  Aligned_cols=22  Identities=27%  Similarity=0.372  Sum_probs=19.6

Q ss_pred             EEEEcCCCCcHHHHHHHH---hcCC
Q 036195           20 IGLYGVRGVGKSTLIKQL---NDMF   41 (183)
Q Consensus        20 ~~liGpNGaGKSTLl~~i---~gl~   41 (183)
                      +||+|.-|+|||||+..|   +|.+
T Consensus        20 I~iiGhvd~GKTTL~d~Ll~~~g~i   44 (341)
T d1n0ua2          20 MSVIAHVDHGKSTLTDSLVQRAGII   44 (341)
T ss_dssp             EEEECCGGGTHHHHHHHHHHHHBCC
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCc
Confidence            999999999999999998   4654

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.82  E-value=0.048  Score=39.95  Aligned_cols=20  Identities=30%  Similarity=0.230  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 036195           19 IIGLYGVRGVGKSTLIKQLN   38 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~   38 (183)
                      -++++|.-++|||||+..|+
T Consensus         8 Ni~iiGHvD~GKsTl~~~ll   27 (239)
T d1f60a3           8 NVVVIGHVDSGKSTTTGHLI   27 (239)
T ss_dssp             EEEEEECTTSCHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            57899999999999988873

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=91.79  E-value=0.075  Score=39.47  Aligned_cols=27  Identities=33%  Similarity=0.332  Sum_probs=23.2

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHhcCCC
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQLNDMFS   42 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i~gl~~   42 (183)
                      .+-.++++|-.-+|||||++.|.|-..
T Consensus       111 ~~~~v~vvG~PNvGKSsliN~L~~~~~  137 (273)
T d1puja_         111 RAIRALIIGIPNVGKSTLINRLAKKNI  137 (273)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred             CceEEEEEecCccchhhhhhhhhccce
Confidence            444689999999999999999999654

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=91.50  E-value=0.067  Score=37.93  Aligned_cols=26  Identities=12%  Similarity=-0.095  Sum_probs=21.9

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .+-.+-+.||+|+||||+.+.++..+
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~~i   39 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPEYV   39 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHH
Confidence            45577889999999999999888754

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=91.48  E-value=0.061  Score=45.64  Aligned_cols=27  Identities=19%  Similarity=0.257  Sum_probs=23.9

Q ss_pred             cCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           15 DGVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .+.+++-|.|.+|||||.-.|.|...+
T Consensus       123 ~~nQsIiisGeSGaGKTe~~k~il~yL  149 (712)
T d1d0xa2         123 RQNQSLLITGESGAGKTENTKKVIQYL  149 (712)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCceEEEeCCCCCCHHHHHHHHHHHH
Confidence            567899999999999999999887765

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=91.45  E-value=0.062  Score=45.37  Aligned_cols=28  Identities=18%  Similarity=0.329  Sum_probs=23.9

Q ss_pred             ecCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           14 DDGVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      -.+.+++-|.|.+|||||+-.|.|...+
T Consensus        83 ~~~~QsIiisGeSGsGKTe~~k~il~yL  110 (684)
T d1lkxa_          83 SQENQCVIISGESGAGKTEASKKIMQFL  110 (684)
T ss_dssp             HCCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            3578899999999999999998886654

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=91.44  E-value=0.036  Score=39.81  Aligned_cols=29  Identities=14%  Similarity=0.124  Sum_probs=26.0

Q ss_pred             ecCccEEEEEcCCCCcHHHHHHHHhcCCC
Q 036195           14 DDGVKIIGLYGVRGVGKSTLIKQLNDMFS   42 (183)
Q Consensus        14 i~~Ge~~~liGpNGaGKSTLl~~i~gl~~   42 (183)
                      +.+-.++.+.||.++|||++..+|+.++.
T Consensus        50 ~PKkn~i~~~GP~~TGKS~f~~sl~~~l~   78 (205)
T d1tuea_          50 TPKKNCLVFCGPANTGKSYFGMSFIHFIQ   78 (205)
T ss_dssp             CTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             CCCceEEEEECCCCccHHHHHHHHHHHhC
Confidence            56778999999999999999999999874

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=91.36  E-value=0.031  Score=41.19  Aligned_cols=31  Identities=26%  Similarity=0.172  Sum_probs=22.3

Q ss_pred             cccccceecCccEEEEEcCCCCcHHHHHHHH
Q 036195            7 PHLRYIEDDGVKIIGLYGVRGVGKSTLIKQL   37 (183)
Q Consensus         7 ~~l~~l~i~~Ge~~~liGpNGaGKSTLl~~i   37 (183)
                      ..++...-++.=-++|+|.-++|||||+..|
T Consensus        14 ~~~~~~~~k~~iNi~iiGHVD~GKSTL~~~L   44 (245)
T d1r5ba3          14 ELLKDMYGKEHVNIVFIGHVDAGKSTLGGNI   44 (245)
T ss_dssp             TTHHHHSCCEEEEEEEEECGGGTHHHHHHHH
T ss_pred             HHHHHhcCCCceEEEEEeeCCCCHHHHHHHH
Confidence            3444443333223899999999999999988

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=91.23  E-value=0.045  Score=43.09  Aligned_cols=21  Identities=33%  Similarity=0.493  Sum_probs=17.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 036195           19 IIGLYGVRGVGKSTLIKQLND   39 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~g   39 (183)
                      -+.||||.|.|||+++.-++-
T Consensus        45 n~llvG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          45 NPVLIGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             CCEEEECTTSCHHHHHHHHHH
T ss_pred             CCeEECCCCCCHHHHHHHHHH
Confidence            467999999999999865553

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=90.94  E-value=0.074  Score=45.07  Aligned_cols=27  Identities=22%  Similarity=0.213  Sum_probs=23.7

Q ss_pred             cCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           15 DGVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      .+.+++-|.|.+|||||+-.|.|...+
T Consensus        89 ~~~Q~IiisGeSGaGKTe~~k~il~yL  115 (710)
T d1br2a2          89 REDQSILCTGESGAGKTENTKKVIQYL  115 (710)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            567899999999999999988887665

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=90.43  E-value=0.12  Score=37.76  Aligned_cols=38  Identities=16%  Similarity=0.207  Sum_probs=27.5

Q ss_pred             cCccEEEEEcCCCCcHHHHHHHHhcCCCCCCcE-EEEEe
Q 036195           15 DGVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHK-FAIYA   52 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~-I~~~g   52 (183)
                      ....-+.|.|+.|+||+++.+.|-..-...... +.++.
T Consensus        21 ~~~~pvlI~Ge~GtGK~~~A~~ih~~s~~~~~~~~~~~~   59 (247)
T d1ny5a2          21 CAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNV   59 (247)
T ss_dssp             TCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEET
T ss_pred             CCCCCEEEECCCCcCHHHHHHHHHHhcCCcccccccchh
Confidence            445668899999999999999998765544433 33443

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=90.40  E-value=0.1  Score=34.92  Aligned_cols=25  Identities=28%  Similarity=0.216  Sum_probs=20.4

Q ss_pred             ccEEEEEcCCCCcHHH-HHHHHhcCC
Q 036195           17 VKIIGLYGVRGVGKST-LIKQLNDMF   41 (183)
Q Consensus        17 Ge~~~liGpNGaGKST-Ll~~i~gl~   41 (183)
                      |.+..++||=.||||| |++.+....
T Consensus         2 G~L~~i~GpMfsGKTteLi~~~~~~~   27 (139)
T d2b8ta1           2 GWIEFITGPMFAGKTAELIRRLHRLE   27 (139)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             cEEEEEEccccCHHHHHHHHHHHHHH
Confidence            6778899999999999 777765553

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=90.34  E-value=0.045  Score=40.61  Aligned_cols=25  Identities=16%  Similarity=0.066  Sum_probs=19.9

Q ss_pred             ecCccEEEEEcCCCCcHHH--HHHHHh
Q 036195           14 DDGVKIIGLYGVRGVGKST--LIKQLN   38 (183)
Q Consensus        14 i~~Ge~~~liGpNGaGKST--Ll~~i~   38 (183)
                      +.+|+.+-|.+|.|||||+  +..++.
T Consensus         6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~   32 (305)
T d2bmfa2           6 FRKKRLTIMDLHPGAGKTKRYLPAIVR   32 (305)
T ss_dssp             SSTTCEEEECCCTTSSTTTTHHHHHHH
T ss_pred             hhcCCcEEEEECCCCCHHHHHHHHHHH
Confidence            5689999999999999996  334443

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=90.24  E-value=0.09  Score=45.12  Aligned_cols=27  Identities=26%  Similarity=0.337  Sum_probs=23.2

Q ss_pred             cCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           15 DGVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      ...+++-|.|.+|||||+-.|.|...+
T Consensus       121 ~~~QsIiisGeSGaGKTe~~K~il~yL  147 (794)
T d2mysa2         121 RENQSILITGESGAGKTVNTKRVIQYF  147 (794)
T ss_dssp             TCCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            567899999999999999888777665

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.72  E-value=0.12  Score=33.82  Aligned_cols=41  Identities=15%  Similarity=-0.031  Sum_probs=27.8

Q ss_pred             cCccEEEEEcCCCCcHHHHHHHH-hcCCCCCC-cEEEE-EecCc
Q 036195           15 DGVKIIGLYGVRGVGKSTLIKQL-NDMFSDMS-HKFAI-YAVSL   55 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl~~i-~gl~~p~~-G~I~~-~g~~~   55 (183)
                      +.|=.+-+.|-+||||||+.+++ ..+++-.. =.|++ +|.++
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~~l~q~~G~R~vtll~~~ni   47 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNNK   47 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTTC
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHHHHHHhcCCcceEEecCCCH
Confidence            45667888999999999999888 45554322 24553 44443

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=89.70  E-value=0.037  Score=40.04  Aligned_cols=23  Identities=17%  Similarity=0.058  Sum_probs=18.6

Q ss_pred             ecCccEEEEEcCCCCcHHHHHHH
Q 036195           14 DDGVKIIGLYGVRGVGKSTLIKQ   36 (183)
Q Consensus        14 i~~Ge~~~liGpNGaGKSTLl~~   36 (183)
                      +-+|+-+.+++|.|+|||+..-+
T Consensus        55 ~l~g~~~~i~apTGsGKT~~~~~   77 (237)
T d1gkub1          55 ILRKESFAATAPTGVGKTSFGLA   77 (237)
T ss_dssp             HHTTCCEECCCCBTSCSHHHHHH
T ss_pred             HHCCCCEEEEecCCChHHHHHHH
Confidence            34788899999999999976443

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=89.65  E-value=0.1  Score=44.76  Aligned_cols=27  Identities=19%  Similarity=0.164  Sum_probs=22.7

Q ss_pred             cCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           15 DGVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      ...+++-|.|.+|||||.-.|.|...+
T Consensus       119 ~~nQ~IiisGESGaGKTe~~K~il~yL  145 (789)
T d1kk8a2         119 RENQSCLITGESGAGKTENTKKVIMYL  145 (789)
T ss_dssp             TSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            567899999999999999977766654

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=88.76  E-value=0.14  Score=43.43  Aligned_cols=27  Identities=26%  Similarity=0.283  Sum_probs=23.8

Q ss_pred             cCccEEEEEcCCCCcHHHHHHHHhcCC
Q 036195           15 DGVKIIGLYGVRGVGKSTLIKQLNDMF   41 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTLl~~i~gl~   41 (183)
                      ...+++-|.|++|||||+-.|.+...+
T Consensus        92 ~~~Q~IiisGeSGsGKTe~~k~il~~l  118 (730)
T d1w7ja2          92 ERNQSIIVSGESGAGKTVSAKYAMRYF  118 (730)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            567899999999999999999887765

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.00  E-value=0.17  Score=33.47  Aligned_cols=21  Identities=29%  Similarity=0.165  Sum_probs=17.8

Q ss_pred             CccEEEEEcCCCCcHHHHHHH
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQ   36 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~   36 (183)
                      +|.+..|+||=.|||||-|=-
T Consensus         1 ~G~L~li~GpMfsGKTt~Li~   21 (133)
T d1xbta1           1 RGQIQVILGPMFSGKSTELMR   21 (133)
T ss_dssp             CCEEEEEECCTTSCHHHHHHH
T ss_pred             CcEEEEEEecccCHHHHHHHH
Confidence            588999999999999996433

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=87.24  E-value=0.2  Score=36.55  Aligned_cols=38  Identities=24%  Similarity=0.454  Sum_probs=27.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcc
Q 036195           19 IIGLYGVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ   56 (183)
Q Consensus        19 ~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~   56 (183)
                      +++|.|.-|+||||+.-.|+..+.-..=+|.+-+-|++
T Consensus         3 ~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID~D~q   40 (269)
T d1cp2a_           3 QVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPK   40 (269)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTT
T ss_pred             EEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            68899999999999987777766544335666556654

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=86.70  E-value=0.18  Score=35.60  Aligned_cols=39  Identities=28%  Similarity=0.378  Sum_probs=28.1

Q ss_pred             ccEEEEE-cCCCCcHHHHHHHHhcCCCCCCcEEEEEecCc
Q 036195           17 VKIIGLY-GVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSL   55 (183)
Q Consensus        17 Ge~~~li-GpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~   55 (183)
                      |.++++. +.-|+||||+--.++..+.-..-+|.+-+-|.
T Consensus         2 ~~vIav~~~kGGvGKTtia~nLA~~la~~g~~VlliD~D~   41 (237)
T d1g3qa_           2 GRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDL   41 (237)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred             CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            6789998 66789999998888777654334665555454

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=86.34  E-value=0.11  Score=36.40  Aligned_cols=20  Identities=25%  Similarity=-0.007  Sum_probs=16.4

Q ss_pred             ecCccEEEEEcCCCCcHHHH
Q 036195           14 DDGVKIIGLYGVRGVGKSTL   33 (183)
Q Consensus        14 i~~Ge~~~liGpNGaGKSTL   33 (183)
                      +..|.-+-+.+|.|||||+.
T Consensus        37 l~~~~~~il~apTGsGKT~~   56 (202)
T d2p6ra3          37 VFSGKNLLLAMPTAAGKTLL   56 (202)
T ss_dssp             HTTCSCEEEECSSHHHHHHH
T ss_pred             HHcCCCEEEEcCCCCchhHH
Confidence            34577778999999999986

>d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF
species: Escherichia coli [TaxId: 562]

Probab=85.74  E-value=0.18  Score=35.10  Aligned_cols=31  Identities=16%  Similarity=0.323  Sum_probs=25.1

Q ss_pred             CccEEEEEcCCCCcHHHHHHHHhcCCCCCCcEEE
Q 036195           16 GVKIIGLYGVRGVGKSTLIKQLNDMFSDMSHKFA   49 (183)
Q Consensus        16 ~Ge~~~liGpNGaGKSTLl~~i~gl~~p~~G~I~   49 (183)
                      |+.++||.|-|  ||||.-.+|.-+++. .|...
T Consensus         1 p~kvI~VTGTn--GKTTt~~mi~~iL~~-~g~~~   31 (214)
T d1gg4a4           1 PARVVALTGSS--GKTSVKEMTAAILSQ-CGNTL   31 (214)
T ss_dssp             CCEEEEEECSS--CHHHHHHHHHHHHTT-TSCEE
T ss_pred             CCCEEEEeCCC--cHHHHHHHHHHHHHh-CCCCE
Confidence            56899999998  599999999999874 44443

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=83.31  E-value=0.32  Score=33.49  Aligned_cols=16  Identities=19%  Similarity=0.185  Sum_probs=12.4

Q ss_pred             EEEEcCCCCcHHHHHH
Q 036195           20 IGLYGVRGVGKSTLIK   35 (183)
Q Consensus        20 ~~liGpNGaGKSTLl~   35 (183)
                      .-+.+|.|+|||...-
T Consensus        26 ~lv~~pTGsGKT~i~~   41 (200)
T d1wp9a1          26 CLIVLPTGLGKTLIAM   41 (200)
T ss_dssp             EEEECCTTSCHHHHHH
T ss_pred             eEEEeCCCCcHHHHHH
Confidence            3478999999997533

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=82.24  E-value=0.46  Score=32.81  Aligned_cols=33  Identities=21%  Similarity=0.085  Sum_probs=24.2

Q ss_pred             EEEEEcCC-CCcHHHHHHHHhcCCCCCCcEEEEE
Q 036195           19 IIGLYGVR-GVGKSTLIKQLNDMFSDMSHKFAIY   51 (183)
Q Consensus        19 ~~~liGpN-GaGKSTLl~~i~gl~~p~~G~I~~~   51 (183)
                      .+-|.|-+ |+||||+--.|+..+.-..-+|.+-
T Consensus         3 ~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~i   36 (224)
T d1byia_           3 RYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGY   36 (224)
T ss_dssp             EEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             eEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence            56789997 9999999877777765443355553

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=82.11  E-value=0.47  Score=31.55  Aligned_cols=23  Identities=26%  Similarity=0.198  Sum_probs=18.9

Q ss_pred             cCccEEEEEcCCCCcHHHH-HHHH
Q 036195           15 DGVKIIGLYGVRGVGKSTL-IKQL   37 (183)
Q Consensus        15 ~~Ge~~~liGpNGaGKSTL-l~~i   37 (183)
                      ..|.+-.|+||=.|||||- ++.+
T Consensus         5 ~~G~l~lI~GpMfSGKTteLi~~~   28 (141)
T d1xx6a1           5 DHGWVEVIVGPMYSGKSEELIRRI   28 (141)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHH
T ss_pred             cceeEEEEEeccccHHHHHHHHHH
Confidence            4688999999999999996 4444

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=80.73  E-value=0.45  Score=33.35  Aligned_cols=38  Identities=24%  Similarity=0.439  Sum_probs=26.1

Q ss_pred             EEEEE-cCCCCcHHHHHHHHhcCCCCCCcEEEEEecCcc
Q 036195           19 IIGLY-GVRGVGKSTLIKQLNDMFSDMSHKFAIYAVSLQ   56 (183)
Q Consensus        19 ~~~li-GpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~   56 (183)
                      ++++. |.-|+||||+.-.++..+.-..-+|.+-+-|.+
T Consensus         3 vIav~s~KGGvGKTtia~nlA~~la~~g~~VlliD~D~~   41 (232)
T d1hyqa_           3 TITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADIT   41 (232)
T ss_dssp             EEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred             EEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            67776 778899999988877776543345655444443