Citrus Sinensis ID: 036196

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-
Protein Sequence
MADNGGFDGEQGSTTSFSQLLFSDDVVLGLDFNNYACSSVFSANEKPPKMLCFGDYNKQNDGDIVVYGETTATAAATPKSGITCSDSSSASSGNNSSANTPSKSTKKRNGSAQESVPRSNLATTTSPVVSQRTSKKTKAADNPSSTAHAKAKKEKLGDRITALQQLVSPFGKTDTASVLHEAMGYIRFLHDQVQVLCSPYLQHHQHEGGENGGEESRKDLKSKGLCLVPVACTVHVANSNGADFWAPAMGSNVSSPAGAPAVTITKQQQLK
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHcccccEEcccccccccccccccccccccEEEccccccccccccEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccEEEEEEcccccccccccccccccccccccccccccccEEEEcccccc
Coil and Loop (DISEMBL)
madnggfdgeqgsttsfsqllfsddvvlgldfnnyacssvfsanekppkmlcfgdynkqndgdivvygettataaatpksgitcsdsssassgnnssantpskstkkrngsaqesvprsnlatttspvvsqrtskktkaadnpsstaHAKAKKEKLGDRITALQQLvspfgktdtASVLHEAMGYIRFLHDQVQVLcspylqhhqheggenggeesrkdlkskglclvpVACTVHVansngadfwapamgsnvsspagapavtitkQQQLK
Flexible Loop (DISEMBL)
madnggfdgeqgstTSFSQLLFSDDVVLGLDFNNYACSSVFSANEKPPKMLCFGDYNKQNDGDIVVYGETTataaatpksgitcsdsssassgnnssantpskstkkrngsaqesvprsnlatttspvvsqrtskktkaadnpsstahakakkekLGDRITALQQLVSPFGKTDTASVLHEAMGYIRFLHDQVQVLCSPYLQHHQHEGGENGGEESRKDLKSKGLCLVPVACTVHVANSNGADFWAPAMGSNVSSPAGAPAVTITKQQQLK
Low Complexity Region (SEG)
MADNGGFDGEQGSTTSFSQLLFSDDVVLGLDFNNYACSSVFSANEKPPKMLCFGDYNKQNDGDIVVYGETTATAAATPKsgitcsdsssassgnnssantpsKSTKKRNGSAQESVPRSNLATTTSPVVSQRTSKKTKAADNPSSTAHAKAKKEKLGDRITALQQLVSPFGKTDTASVLHEAMGYIRFLHDQVQVLCSPYLQHHQHeggenggeeSRKDLKSKGLCLVPVACTVHVANSNGADFWAPAMGSNVSSPAGAPAVTITKQQQLK
Disordered region (IsUnstruct)
****************FSQLLFSDDVVLGLDFNNYACSSVFSANEKPPKMLCFGDYNKQNDGDIVVYGETTA***************************************************************************************ITALQQLVSPFGKTDTASVLHEAMGYIRFLHDQVQVLCSPYLQ********************KGLCLVPVACTVHVANSNGADFWAP************************
Disordered Region (DISOPRED)
***************************************************************************************************************************************************************ITALQQLVSPFGKTDTASVLHEAMGYIRFLHDQVQVL***************************GLCLVPVACTVHVANSNGADFW**************************
Disordered Region (DISEMBL)
***********GSTTSFSQLLFSDDVVLGLDFNNYACSSVFSANEKPPKMLCFGDYNKQNDGDIVVYGETTATAAA*******************************************************************************LGDRITALQQLVSPFGKTDTASVLHEAMGYIRFLHDQVQVLCSPYLQH*****************KSKGLCLVPVACTVHVANSNGADFWAPAMGSNVSSPAGAPAVTITKQQQLK
Disordered Region (DISPRO)
**************TSFSQLLFSDDVVLGLDFNNYACSSVFSANEKPPKMLCFGDYNKQNDGDIVVYGETTATAA**************************************************************************KAKKEKLGDRITALQQLVSPFGKTDTASVLHEAMGYIRFLHDQVQVLCSPYL******************LKSKGLCLVPVACTVHVANSNGADFWAPAMGSNVS*****************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MADNGGFDGEQGSTTSFSQLLFSDDVVLGLDFNNYACSSVFSANEKPPKMLCFGDYNKQNDGDIVVYGETTATAAATPKSGITCSDSSSASSGNNSSANTPSKSTKKRNGSAQESVPRSNLATTTSPVVSQRTSKKTKAADNPSSTAHAKAKKEKLGDRITALQQLVSPFGKTDTASVLHEAMGYIRFLHDQVQVLCSPYLQHHQHEGGENGGEESRKDLKSKGLCLVPVACTVHVANSNGADFWAPAMGSNVSSPAGAPAVTITKQQQLK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	271	2.2.26 [Sep-21-2011]
Q9LT67	270	Transcription factor bHLH	yes	no	0.852	0.855	0.429	1e-43
Q8S3D1	407	Transcription factor bHLH	no	no	0.439	0.292	0.462	6e-33
Q7XHI5	362	Transcription factor bHLH	no	no	0.409	0.306	0.46	2e-30
Q94JL3	393	Transcription factor bHLH	no	no	0.461	0.318	0.430	4e-27
Q8GXT3	454	Transcription factor bHLH	no	no	0.416	0.248	0.504	3e-26
Q9SFZ3	453	Transcription factor bHLH	no	no	0.383	0.229	0.5	1e-24
Q9FYJ6	319	Transcription factor bHLH	no	no	0.439	0.373	0.421	4e-21
Q8VZ22	301	Transcription factor bHLH	no	no	0.365	0.328	0.482	1e-20
Q9M0X8	298	Transcription factor bHLH	no	no	0.298	0.271	0.540	3e-18
Q9LSQ3	297	Transcription factor bHLH	no	no	0.350	0.319	0.377	3e-10

>sp|Q9LT67|BH113_ARATH Transcription factor bHLH113 OS=Arabidopsis thaliana GN=BHLH113 PE=2 SV=1

 Score =  176 bits (446), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 115/268 (42%), Positives = 149/268 (55%), Gaps = 37/268 (13%)

Query: 10  EQGSTTSFSQLLFSDDVVLGL-----------DFNNYACSSVFSANEKPPKMLCF-GDYN 57
           E    TSFS+LL   D VL             D    +   VFS  +   +MLCF G Y 
Sbjct: 15  EAEGVTSFSELLMFSDGVLSSSSDHQPEGNVGDGGEDSLGFVFSG-KTGSRMLCFSGGY- 72

Query: 58  KQNDGDIVVYGETTATAAATPKS----GITCSDSSSASSGNNSSANTPSKSTKKRNGSAQ 113
            QND + +    +  T+  +        I C +S+ A + + S+ +    STKKR G+  
Sbjct: 73  -QNDDESLFLEPSVPTSGVSDLDPSCIKIDCRNSNDACTVDKSTKS----STKKRTGTGN 127

Query: 114 ESVPRSNLATTTSPVVSQRTSKKTKAADNPSSTAHAKAKKEKLGDRITALQQLVSPFGKT 173
                 N          ++  KK K     SS   AK +KE+LG+RI ALQQLVSP+GKT
Sbjct: 128 GQESDQN----------RKPGKKGKRNQEKSSVGIAKVRKERLGERIAALQQLVSPYGKT 177

Query: 174 DTASVLHEAMGYIRFLHDQVQVLCSPYLQHHQHEGGENGGE----ESRKDLKSKGLCLVP 229
           D ASVLHEAMGYI+FL DQ+QVLCSPYL +H  +GG   G+       KDL+S+GLCLVP
Sbjct: 178 DAASVLHEAMGYIKFLQDQIQVLCSPYLINHSLDGGVVTGDVMAAMKAKDLRSRGLCLVP 237

Query: 230 VACTVHVANSNGADFWAPAMGSNVSSPA 257
           V+ TVHV NSNGADFW+PA   + +SP+
Sbjct: 238 VSSTVHVENSNGADFWSPATMGHTTSPS 265

Arabidopsis thaliana (taxid: 3702)

>sp|Q8S3D1|BH068_ARATH Transcription factor bHLH68 OS=Arabidopsis thaliana GN=BHLH68 PE=2 SV=2

 Score =  141 bits (355), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 73/158 (46%), Positives = 93/158 (58%), Gaps = 39/158 (24%)

Query: 133 TSKKTKAADNPSSTAHAKAKKEKLGDRITALQQLVSPFGKTDTASVLHEAMGYIRFLHDQ 192
           T+KK +   +PSS +  K +KEKLG RI AL QLVSPFGKTDTASVL EA+GYIRFL  Q
Sbjct: 246 TNKKPRLQPSPSSQSTLKVRKEKLGGRIAALHQLVSPFGKTDTASVLSEAIGYIRFLQSQ 305

Query: 193 VQVLCSPY--------LQHHQHEGG-------------------------------ENGG 213
           ++ L  PY        ++H QH  G                               +N  
Sbjct: 306 IEALSHPYFGTTASGNMRHQQHLQGDRSCIFPEDPGQLVNDQCMKRRGASSSSTDNQNAS 365

Query: 214 EESRKDLKSKGLCLVPVACTVHVANSNGADFWAPAMGS 251
           EE +KDL+S+GLCLVP++CT+ V + NGAD+WAPA+GS
Sbjct: 366 EEPKKDLRSRGLCLVPISCTLQVGSDNGADYWAPALGS 403

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XHI5|BH133_ARATH Transcription factor bHLH133 OS=Arabidopsis thaliana GN=BHLH133 PE=2 SV=1

 Score =  132 bits (332), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 69/150 (46%), Positives = 86/150 (57%), Gaps = 39/150 (26%)

Query: 143 PSSTAHAKAKKEKLGDRITALQQLVSPFGKTDTASVLHEAMGYIRFLHDQVQVLCSPYL- 201
           PSS +  K +KEKLG RI +L QLVSPFGKTDTASVL EA+GYIRFLH Q++ L  PY  
Sbjct: 212 PSSQSTLKVRKEKLGGRIASLHQLVSPFGKTDTASVLSEAIGYIRFLHSQIEALSLPYFG 271

Query: 202 ------QHHQH-----------EGGE---------------------NGGEESRKDLKSK 223
                   HQH           + G+                     N  EE  KDL+S+
Sbjct: 272 TPSRNNMMHQHAQRNMNGIFPEDPGQLVNEYCMKRGVSLSSTDNQKSNPNEEPMKDLRSR 331

Query: 224 GLCLVPVACTVHVANSNGADFWAPAMGSNV 253
           GLCLVP++CT+ V + NGAD+WAPA G+ +
Sbjct: 332 GLCLVPISCTLQVGSDNGADYWAPAFGTTL 361

Arabidopsis thaliana (taxid: 3702)

>sp|Q94JL3|BH112_ARATH Transcription factor bHLH112 OS=Arabidopsis thaliana GN=BHLH112 PE=2 SV=1

 Score =  122 bits (305), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 71/165 (43%), Positives = 86/165 (52%), Gaps = 40/165 (24%)

Query: 124 TTSPVVSQRTSKKTK-------------AADN-----------PSSTAHAKAKKEKLGDR 159
           TT  ++S R   KTK             A DN           PS     K +KE L D+
Sbjct: 230 TTPQIISTRLEDKTKNLKTRAQSESLKRAKDNESAAKKPRVTTPSPLPTFKVRKENLRDQ 289

Query: 160 ITALQQLVSPFGKTDTASVLHEAMGYIRFLHDQVQVLCSPYLQHHQHEGGENGG------ 213
           IT+LQQLVSPFGKTDTASVL EA+ YI+FLHDQV VL +PY++    +G  N        
Sbjct: 290 ITSLQQLVSPFGKTDTASVLQEAIEYIKFLHDQVTVLSTPYMK----QGASNQQQQQISG 345

Query: 214 ------EESRKDLKSKGLCLVPVACTVHVANSNGADFWAPAMGSN 252
                 E    +L+  GLCLVP++ T  VAN   ADFW P  G N
Sbjct: 346 KSKSQDENENHELRGHGLCLVPISSTFPVANETTADFWTPTFGGN 390

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXT3|BH123_ARATH Transcription factor bHLH123 OS=Arabidopsis thaliana GN=BHLH123 PE=2 SV=1

 Score =  118 bits (296), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 60/119 (50%), Positives = 73/119 (61%), Gaps = 6/119 (5%)

Query: 138 KAADNPSSTAHAKAKKEKLGDRITALQQLVSPFGKTDTASVLHEAMGYIRFLHDQVQVLC 197
           +A    +S + A  +KEK+GDRI ALQQLVSPFGKTD ASVL EA+ YI+FLH QV  L 
Sbjct: 332 RAKSEAASPSPAFKRKEKMGDRIAALQQLVSPFGKTDAASVLSEAIEYIKFLHQQVSALS 391

Query: 198 SPY------LQHHQHEGGENGGEESRKDLKSKGLCLVPVACTVHVANSNGADFWAPAMG 250
           +PY      LQH Q +           DL+S+GLCLVPV+ T  V +    DFW P  G
Sbjct: 392 NPYMKSGASLQHQQSDHSTELEVSEEPDLRSRGLCLVPVSSTFPVTHDTTVDFWTPTFG 450

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SFZ3|BH110_ARATH Transcription factor bHLH110 OS=Arabidopsis thaliana GN=BHLH110 PE=2 SV=2

 Score =  113 bits (283), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 57/114 (50%), Positives = 77/114 (67%), Gaps = 10/114 (8%)

Query: 131 QRTSKKTKAADNPSSTAHAKAKKEKLGDRITALQQLVSPFGKTDTASVLHEAMGYIRFLH 190
           +  SKK +  ++ SS    K +KEKLGDRI ALQQLVSPFGKTDTASVL EA+GYI+FL 
Sbjct: 314 ENASKKPRV-ESRSSCPPFKVRKEKLGDRIAALQQLVSPFGKTDTASVLMEAIGYIKFLQ 372

Query: 191 DQVQVLCSPYLQHHQHEGG---------ENGGEESRKDLKSKGLCLVPVACTVH 235
            Q++ L  PY++  ++  G         + G EE  +DL+S+GLCLVP++C  +
Sbjct: 373 SQIETLSVPYMRASRNRPGKASQLVSQSQEGDEEETRDLRSRGLCLVPLSCMTY 426

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FYJ6|BH111_ARATH Transcription factor bHLH111 OS=Arabidopsis thaliana GN=BHLH111 PE=2 SV=1

 Score =  102 bits (253), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 54/128 (42%), Positives = 81/128 (63%), Gaps = 9/128 (7%)

Query: 129 VSQRTSKKTKAADNPSSTAHAKAKKEKLGDRITALQQLVSPFGKTDTASVLHEAMGYIRF 188
           +S   SKK K ++  + +   +  K KL D+IT LQQ+VSPFGKTDTASVL EA+ YI F
Sbjct: 184 ISDEVSKKAKCSEGSTLSPEKELPKAKLRDKITTLQQIVSPFGKTDTASVLQEAITYINF 243

Query: 189 LHDQVQVLCSPYLQHHQHE---GGENGGEESRK-----DLKSKGLCLVPVACTVHVANSN 240
             +QV++L +PY+++   +   GG +  + +++     DL+S+GLCLVP++ T      N
Sbjct: 244 YQEQVKLLSTPYMKNSSMKDPWGGWDREDHNKRGPKHLDLRSRGLCLVPISYTPIAYRDN 303

Query: 241 GA-DFWAP 247
            A D+W P
Sbjct: 304 SATDYWNP 311

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VZ22|BH103_ARATH Transcription factor bHLH103 OS=Arabidopsis thaliana GN=BHLH103 PE=2 SV=1

 Score =  100 bits (249), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 54/112 (48%), Positives = 70/112 (62%), Gaps = 13/112 (11%)

Query: 136 KTKAADNPSSTAHAKAKKEKLGDRITALQQLVSPFGKTDTASVLHEAMGYIRFLHDQV-- 193
           K    + PS     K +KEKLGDRITALQQLVSPFGKTDTASVLH+A+ YI+FL +Q+  
Sbjct: 176 KRPRLETPSHFPSFKVRKEKLGDRITALQQLVSPFGKTDTASVLHDAIDYIKFLQEQITE 235

Query: 194 QVLCSPYL-------QHHQHEGGENGGEES----RKDLKSKGLCLVPVACTV 234
           +V  SP+L       Q    +   N         R+DL+S+GLCL+P++ T 
Sbjct: 236 KVSTSPHLNSIGSGEQKQWSDKSSNNTHNQNCSPRQDLRSRGLCLMPISSTF 287

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M0X8|BH114_ARATH Transcription factor bHLH114 OS=Arabidopsis thaliana GN=BHLH114 PE=2 SV=2

 Score = 92.4 bits (228), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 53/98 (54%), Positives = 66/98 (67%), Gaps = 17/98 (17%)

Query: 150 KAKKEKLGDRITALQQLVSPFGKTDTASVLHEAMGYIRFLHDQVQVLCSPY------LQH 203
           K +KEKLGDRITALQQLVSPFGKTDTASVL+EA+ YI+FL +QV VL +P       +Q 
Sbjct: 173 KVRKEKLGDRITALQQLVSPFGKTDTASVLNEAVEYIKFLQEQVTVLSNPEQNTIGSVQQ 232

Query: 204 HQ-------HEGGENGGEE--SRK--DLKSKGLCLVPV 230
            Q       +  GE   +E   R+  DL S+GLCL+P+
Sbjct: 233 QQCSNKKSINTQGEVEEDECSPRRYVDLSSRGLCLMPI 270

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSQ3|BH082_ARATH Transcription factor bHLH82 OS=Arabidopsis thaliana GN=BHLH82 PE=2 SV=1

 Score = 65.9 bits (159), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 59/98 (60%), Gaps = 3/98 (3%)

Query: 101 PSKSTKKRNGSAQESVPRSNLATTTSPVVSQ--RTSKKTKAADNPSSTAHAKAKKEKLGD 158
           P +S     GS +   P+  ++TT++PVV Q  R   +   A +P S A  + ++E++ +
Sbjct: 65  PQESGGPTMGSQEGLQPQGTVSTTSAPVVRQKPRVRARRGQATDPHSIAE-RLRRERIAE 123

Query: 159 RITALQQLVSPFGKTDTASVLHEAMGYIRFLHDQVQVL 196
           R+ +LQ+LV    KTD AS+L E + Y+RFL  QV+VL
Sbjct: 124 RMKSLQELVPNTNKTDKASMLDEIIEYVRFLQLQVKVL 161

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	271
225429299	250	PREDICTED: transcription factor bHLH113-	0.892	0.968	0.647	1e-71
296083108	202	unnamed protein product [Vitis vinifera]	0.719	0.965	0.654	4e-58
356534305	282	PREDICTED: transcription factor bHLH113-	0.848	0.815	0.561	4e-57
255573099	239	transcription factor, putative [Ricinus	0.723	0.820	0.6	6e-57
356574284	277	PREDICTED: transcription factor bHLH113-	0.830	0.812	0.568	3e-56
223702440	274	putative basic helix-loop-helix protein	0.841	0.832	0.488	2e-50
147781855	400	hypothetical protein VITISV_006021 [Viti	0.867	0.587	0.494	3e-49
449438633	254	PREDICTED: transcription factor bHLH123-	0.833	0.889	0.465	9e-43
297834858	270	hypothetical protein ARALYDRAFT_342085 [	0.833	0.837	0.444	4e-42
21536756	270	unknown [Arabidopsis thaliana]	0.852	0.855	0.429	5e-42

>gi|225429299|ref|XP_002269988.1| PREDICTED: transcription factor bHLH113-like [Vitis vinifera]

 Score =  275 bits (704), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 169/261 (64%), Positives = 192/261 (73%), Gaps = 19/261 (7%)

Query: 1   MADNGGFDGEQGSTTSFSQLLFSDDVVLGLDFN-NYACSSVFSANEKPPKMLCFGDYNKQ 59
           MAD+ GF  +  S  SFSQLLFSDDVV GLD + ++A S  FS NEKPPKMLCFG Y  +
Sbjct: 1   MADSEGFGEDHLSGGSFSQLLFSDDVV-GLDIDESFAYSPSFS-NEKPPKMLCFGGYQSE 58

Query: 60  NDGDIVVYGETTATAAATPKSGITCSDSSSASSGNNSSANTPSKSTKKRNGSAQESVPRS 119
                V + E T T     KSG+TCSDSSSASS NN++ N  SKS KKRNGS   SVP S
Sbjct: 59  -----VGFAEPTKTPQ---KSGVTCSDSSSASSTNNTNINKASKSNKKRNGSGNMSVPTS 110

Query: 120 NLATTTSPVVSQRTSKKTKAADNPSSTAHAKAKKEKLGDRITALQQLVSPFGKTDTASVL 179
           +     +P   QR SKKTK+ +NP+S  H K KKEKLG+RITALQQLVSPFGKTDTASVL
Sbjct: 111 S-GLAKAPAGGQRNSKKTKS-ENPTSGGHVKVKKEKLGERITALQQLVSPFGKTDTASVL 168

Query: 180 HEAMGYIRFLHDQVQVLCSPYLQ-----HHQHEGGENGGEESRKDLKSKGLCLVPVACTV 234
           HEAMGYIRFL DQVQVLCSPYLQ      H  EGGENG E+S KDL+S+GLCLVPV CT 
Sbjct: 169 HEAMGYIRFLQDQVQVLCSPYLQTLPSSAHMSEGGENGEEKSSKDLRSRGLCLVPVECTE 228

Query: 235 HVANSNGADFWAPAMGSNVSS 255
           HVAN+NGAD+W+PAM +N SS
Sbjct: 229 HVANNNGADYWSPAM-ANTSS 248

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083108|emb|CBI22512.3| unnamed protein product [Vitis vinifera]

 Score =  230 bits (587), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 138/211 (65%), Positives = 156/211 (73%), Gaps = 16/211 (7%)

Query: 50  MLCFGDYNKQNDGDIVVYGETTATAAATPKSGITCSDSSSASSGNNSSANTPSKSTKKRN 109
           MLCFG Y  +     V + E T T     KSG+TCSDSSSASS NN++ N  SKS KKRN
Sbjct: 1   MLCFGGYQSE-----VGFAEPTKTPQ---KSGVTCSDSSSASSTNNTNINKASKSNKKRN 52

Query: 110 GSAQESVPRSNLATTTSPVVSQRTSKKTKAADNPSSTAHAKAKKEKLGDRITALQQLVSP 169
           GS   SVP S+     +P   QR SKKTK+ +NP+S  H K KKEKLG+RITALQQLVSP
Sbjct: 53  GSGNMSVPTSS-GLAKAPAGGQRNSKKTKS-ENPTSGGHVKVKKEKLGERITALQQLVSP 110

Query: 170 FGKTDTASVLHEAMGYIRFLHDQVQVLCSPYLQ-----HHQHEGGENGGEESRKDLKSKG 224
           FGKTDTASVLHEAMGYIRFL DQVQVLCSPYLQ      H  EGGENG E+S KDL+S+G
Sbjct: 111 FGKTDTASVLHEAMGYIRFLQDQVQVLCSPYLQTLPSSAHMSEGGENGEEKSSKDLRSRG 170

Query: 225 LCLVPVACTVHVANSNGADFWAPAMGSNVSS 255
           LCLVPV CT HVAN+NGAD+W+PAM +N SS
Sbjct: 171 LCLVPVECTEHVANNNGADYWSPAM-ANTSS 200

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356534305|ref|XP_003535697.1| PREDICTED: transcription factor bHLH113-like [Glycine max]

 Score =  227 bits (579), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 147/262 (56%), Positives = 171/262 (65%), Gaps = 32/262 (12%)

Query: 15  TSFSQLLF------SDDVVLGL--------DFNNYACSSVFSANEKPPKMLCFGDYNKQN 60
           TSFSQLLF       D+  LGL        ++NN   S +FS + K P+MLCFG  N QN
Sbjct: 18  TSFSQLLFGDDDDDVDESALGLAVDQSYSYNYNNLTRSPLFSIH-KAPQMLCFG--NHQN 74

Query: 61  DGDIVVYGETTATAAATPKSGITCSDSSSASSGNNSSANTPSKSTKKRNGSAQESVPRSN 120
           +   V+  ET  T     KS IT SDSSSAS+ + +  NT   S  K N S Q+   +  
Sbjct: 75  EEGGVLLPETNVTPQ---KSVITSSDSSSASASSCNHTNTAFNSLPKSNNSLQK---KRQ 128

Query: 121 LATTTSPVVSQRTSKKTKAADNPSSTAHAKAKKEKLGDRITALQQLVSPFGKTDTASVLH 180
                  V SQR +KK KA +NP+ST HAK +KEKLG+RI  LQQLVSPFGKTDTASVLH
Sbjct: 129 EGVAKVGVGSQRQTKKNKA-ENPTSTGHAKQRKEKLGERIATLQQLVSPFGKTDTASVLH 187

Query: 181 EAMGYIRFLHDQVQVLCSPYLQ-------HHQHEGGENGGEESRKDLKSKGLCLVPVACT 233
           EAMGYIRFLHDQVQVLCSPYLQ        +QH GG N  EE  KDL+SKGLCL+PV CT
Sbjct: 188 EAMGYIRFLHDQVQVLCSPYLQSLPSSYHQNQHGGGGNNEEEVNKDLRSKGLCLIPVGCT 247

Query: 234 VHVANSNGADFW-APAMGSNVS 254
           VHVA SNGADFW + A+G+NVS
Sbjct: 248 VHVAGSNGADFWSSAAIGNNVS 269

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573099|ref|XP_002527479.1| transcription factor, putative [Ricinus communis] gi|223533119|gb|EEF34877.1| transcription factor, putative [Ricinus communis]

 Score =  226 bits (577), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 141/235 (60%), Positives = 165/235 (70%), Gaps = 39/235 (16%)

Query: 41  FSANEKPPKMLCFGDY--------------NKQNDGDIVVYGETTATAAATP-KSGITCS 85
           +S++ K PKML FG Y              N+ +DG+ VV          TP KSG+TCS
Sbjct: 11  YSSSIKLPKMLSFGGYDNPYLHHHHHHRQKNEVDDGNNVVL--------LTPQKSGVTCS 62

Query: 86  DSSSASSGNNSSA-------NTPSKSTKKRNGSAQESVPRSNLATTTSPVV-SQRTSKKT 137
           DSSSASS NN+S        NT SKS +KRNGS Q +        +T+P+  +QRTSKKT
Sbjct: 63  DSSSASSANNNSNNSVNVNINTASKSNRKRNGSGQGTA-----QCSTNPIAKTQRTSKKT 117

Query: 138 KAADNPSSTAHAKAKKEKLGDRITALQQLVSPFGKTDTASVLHEAMGYIRFLHDQVQVLC 197
           K  +NP+ST   K +KEKLG+RI ALQQLVSPFGKTDTASVLHEAMGYIRFLHDQVQVLC
Sbjct: 118 KM-ENPTSTGQPKIRKEKLGERINALQQLVSPFGKTDTASVLHEAMGYIRFLHDQVQVLC 176

Query: 198 SPYLQHHQHEGGENGGEESRKDLKSKGLCLVPVACTVHVANSNGADFWAPAMGSN 252
           SPYLQ HQ E  EN GEE RKDL+S+GLCLVPV CT HVA+SNGAD+W+PAM +N
Sbjct: 177 SPYLQ-HQPEVEEN-GEEPRKDLRSRGLCLVPVECTAHVASSNGADYWSPAMVNN 229

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574284|ref|XP_003555279.1| PREDICTED: transcription factor bHLH113-like [Glycine max]

 Score =  224 bits (571), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 149/262 (56%), Positives = 178/262 (67%), Gaps = 37/262 (14%)

Query: 15  TSFSQLLF------SDDVVLGLDFN-NYACSSVFSANEKPPKMLCFGDYNKQNDGDIVVY 67
           TSFSQLLF       D+  LGL  + +Y  S +FS + K P+MLCF   N QN GD+++ 
Sbjct: 18  TSFSQLLFGDDDDDYDESALGLAVDQSYTRSPLFSIH-KAPQMLCFA--NHQNQGDVLL- 73

Query: 68  GETTATAAATPKSGITCSDSSSASSG----NNSSANTPSKST---KKRNGSAQESVPRSN 120
            ET  T     KS IT SDSSSAS+      N++ N+  KS    KKRNG  QESV    
Sbjct: 74  PETNVTPQ---KSVITSSDSSSASASSCNHTNTAFNSLPKSNSLQKKRNGMGQESV---- 126

Query: 121 LATTTSPVVSQRTSKKTKAADNPSSTAHAKAKKEKLGDRITALQQLVSPFGKTDTASVLH 180
              T   V SQR +KK KA +NP+ST HAK +KEKLG+RI ALQQLVSPF KTDTASVLH
Sbjct: 127 ---TKVGVGSQRQTKKNKA-ENPTSTGHAKQRKEKLGERIAALQQLVSPFSKTDTASVLH 182

Query: 181 EAMGYIRFLHDQVQVLCSPYLQ-----HHQHEGGEN--GGEESRKDLKSKGLCLVPVACT 233
           EAMGYIRFLHDQVQVLCSPYLQ     +HQ++ G+     EE  KDL+S+GLCL+PV CT
Sbjct: 183 EAMGYIRFLHDQVQVLCSPYLQSLPSSYHQNQHGDGVINEEEVNKDLRSRGLCLIPVGCT 242

Query: 234 VHVANSNGADFW-APAMGSNVS 254
           VHVA SNGADFW + A+G+NV+
Sbjct: 243 VHVAGSNGADFWSSAAIGNNVN 264

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|223702440|gb|ACN21651.1| putative basic helix-loop-helix protein BHLH15 [Lotus japonicus]

 Score =  205 bits (522), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 129/264 (48%), Positives = 163/264 (61%), Gaps = 36/264 (13%)

Query: 15  TSFSQLLFSDDVVLGLDFNNYACSSV------------------FSANEKPPKMLCFGDY 56
           TSFSQLLF DD  +  D   +A  +V                  FS +  P KMLCFG+ 
Sbjct: 20  TSFSQLLFGDDDDVVHDEKAFAFGTVDQTFNNNNNNNLSTNSSLFSIHNTP-KMLCFGN- 77

Query: 57  NKQNDGDIVVYGETTATAAATPKSGITCSDSSSASSGNNSSANTPSKSTKKRNGSAQESV 116
           N QN+GD++       ++  T     + S S+S ++  N S    +   KKRNGS QE  
Sbjct: 78  NYQNEGDLMNNVTPQKSSIITSSDNNSSSASNSCNTSFNYSLPMSNSLQKKRNGSGQEPG 137

Query: 117 PRSNLATTTSPVVSQRTSKKTKAADNPSSTAHAKAKKEKLGDRITALQQLVSPFGKTDTA 176
             +N+     P       KKTKA +NP+ST HAK +KEKLG+RI ALQQLVSPFGKTDTA
Sbjct: 138 TTANVGRQKPPY------KKTKA-ENPTSTGHAKKRKEKLGERIAALQQLVSPFGKTDTA 190

Query: 177 SVLHEAMGYIRFLHDQVQVLCSPYLQH-----HQHEGGENGGEE--SRKDLKSKGLCLVP 229
           SVLHEA GYI+FL DQVQVLCSPYLQ         +G  +GGEE   + +L+S+GLCL+P
Sbjct: 191 SVLHEATGYIKFLQDQVQVLCSPYLQRLPSCSQPGDGDNDGGEEEAEKLNLRSRGLCLIP 250

Query: 230 VACTVHVANSNGADFWAPAMGSNV 253
           V+CTVHVA++NGADFW+P  G+NV
Sbjct: 251 VSCTVHVASTNGADFWSP--GNNV 272

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147781855|emb|CAN67722.1| hypothetical protein VITISV_006021 [Vitis vinifera]

 Score =  201 bits (511), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 131/265 (49%), Positives = 157/265 (59%), Gaps = 30/265 (11%)

Query: 1   MADNGGFDGEQGSTTSFSQLLFSDDVVLGLDFN-NYACSSVFSANEKPPKMLCFGDYN-- 57
           MAD+ GF  +  S  SFSQLLFSDDVV GLD + ++A S  FS NEKPPKMLCFG Y   
Sbjct: 154 MADSEGFGEDHLSGGSFSQLLFSDDVV-GLDIDESFAYSPSFS-NEKPPKMLCFGGYQSE 211

Query: 58  --KQNDGDIVVYGETTATAAATPKSGITCSDSSSASSGNNSSANTPSKSTKKRNGSAQES 115
             K   G  +         AA+PK      ++    +         S+S K+    A   
Sbjct: 212 VGKNEMGQAIC---RCQPRAASPKLRREVRETLRRPNRRIPRPAAMSRSEKQTTPFA--- 265

Query: 116 VPRSNLATTTSPVVSQRTSKKTKAADNPSSTAHAKAKKEKLGDRITALQQLVSPFGKTDT 175
                +     P+  Q TS         S+    + KKEKLG+RITALQQLVSPFGKTDT
Sbjct: 266 ---CRIFLLGLPLSLQSTSLF-------SAKFKYQVKKEKLGERITALQQLVSPFGKTDT 315

Query: 176 ASVLHEAMGYIRFLHDQV-----QVLCSPYLQHHQHEGGENGGEESRKDLKSKGLCLVPV 230
           ASVLHEAMGYIRFL DQV      +L +P      HEGGENG E+S KDL+S+GLCLVPV
Sbjct: 316 ASVLHEAMGYIRFLQDQVAGVVFSILANPAFI-GPHEGGENGEEKSSKDLRSRGLCLVPV 374

Query: 231 ACTVHVANSNGADFWAPAMGSNVSS 255
            CT HVAN+NGAD+W+PAM +N SS
Sbjct: 375 ECTEHVANNNGADYWSPAM-ANTSS 398

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438633|ref|XP_004137092.1| PREDICTED: transcription factor bHLH123-like [Cucumis sativus] gi|449495752|ref|XP_004159934.1| PREDICTED: transcription factor bHLH123-like [Cucumis sativus]

 Score =  179 bits (455), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 127/273 (46%), Positives = 154/273 (56%), Gaps = 47/273 (17%)

Query: 1   MADNGGFDGEQ---GSTTSFSQLLFSDDVVLG----------------LDFNNYACSSVF 41
           MA+N  F G+     + T+FSQLLFS                       D++  + SS  
Sbjct: 1   MAENQSFTGDHLRPTTATTFSQLLFSPHHDDDDDNDVDVDVDQNHHQIFDYSVSSSSSSS 60

Query: 42  SANEKPPKMLCFGDYNKQNDGDIVVYGETTATAAATPKSGITCSDSSSASSGNNSSANTP 101
            A + PPKMLCFG   K+ D +    G       +  +S   CSDSSS SSGN       
Sbjct: 61  FAIDNPPKMLCFG--TKEEDQEHPQLG-----FKSRQRSAHACSDSSSNSSGNGLKFEF- 112

Query: 102 SKSTKKRNGSAQESVPRSNLATTTSPVVSQRTSKKTKAADNPSSTAHAKAKKEKLGDRIT 161
               K+RNGS  E                +  SKKTK  + P S  HAK +KEKLG+RIT
Sbjct: 113 --KLKRRNGSNPEMA------------AIKEASKKTKP-EAPCSAGHAK-RKEKLGERIT 156

Query: 162 ALQQLVSPFGKTDTASVLHEAMGYIRFLHDQVQVLCSPYLQHHQHEGGE----NGGEESR 217
           ALQQLVSPFGKTDTASVLHEAMGYI+FLH+QVQVLCSPYLQ  Q    +     G EE+ 
Sbjct: 157 ALQQLVSPFGKTDTASVLHEAMGYIKFLHEQVQVLCSPYLQKSQLLSSQSATGRGNEETE 216

Query: 218 KDLKSKGLCLVPVACTVHVANSNGADFWAPAMG 250
            DLKS+GLCL+PV C++H+AN   ADFW+PAM 
Sbjct: 217 GDLKSRGLCLIPVDCSLHLANCTVADFWSPAMA 249

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297834858|ref|XP_002885311.1| hypothetical protein ARALYDRAFT_342085 [Arabidopsis lyrata subsp. lyrata] gi|297331151|gb|EFH61570.1| hypothetical protein ARALYDRAFT_342085 [Arabidopsis lyrata subsp. lyrata]

 Score =  177 bits (449), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 119/268 (44%), Positives = 146/268 (54%), Gaps = 42/268 (15%)

Query: 10  EQGSTTSFSQLLFSDDVVLGL-----------DFNNYACSSVFSANEKPPKMLCF-GDYN 57
           E    TSFS+LL   D VL             D    +   VFS  +   +MLCF G Y 
Sbjct: 15  EAEGVTSFSELLMFSDGVLSSSSDHQREGNVGDRGEDSLGFVFSG-KTGSRMLCFSGGY- 72

Query: 58  KQNDGDIVVYGETTATAAATPKSGITCSDSS--SASSGNNSSANT----PSKSTKKRNGS 111
            QND       E+     + P  G++  D S     S N++ A T    P  S KKR G+
Sbjct: 73  -QNDD------ESLFLEPSVPSLGVSVLDPSCIKIDSKNSNDACTVDKSPKSSNKKRTGT 125

Query: 112 AQESVPRSNLATTTSPVVSQRTSKKTKAADNPSSTAHAKAKKEKLGDRITALQQLVSPFG 171
                P  N          ++  KK K   + SS   AK +KE+LG+RI ALQQLVSP+G
Sbjct: 126 GNGQEPDQN----------RKPDKKCKRNQDKSSVGIAKVRKERLGERIAALQQLVSPYG 175

Query: 172 KTDTASVLHEAMGYIRFLHDQVQVLCSPYLQHHQHEGGENGGE----ESRKDLKSKGLCL 227
           KTD ASVLHEAMGYI+FL DQ+QVLCSPYL +H  +GG   G+       KDL+S+GLCL
Sbjct: 176 KTDAASVLHEAMGYIKFLQDQIQVLCSPYLINHSLDGGVVTGDVMAAMKAKDLRSRGLCL 235

Query: 228 VPVACTVHVANSNGADFWAPA-MGSNVS 254
           VPV+ TVHV NSNGADFW+P  MG   S
Sbjct: 236 VPVSSTVHVENSNGADFWSPVTMGHTTS 263

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21536756|gb|AAM61088.1| unknown [Arabidopsis thaliana]

 Score =  177 bits (448), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 115/268 (42%), Positives = 150/268 (55%), Gaps = 37/268 (13%)

Query: 10  EQGSTTSFSQLLFSDDVVLGL-----------DFNNYACSSVFSANEKPPKMLCF-GDYN 57
           E    TSFS+LL   D VL             D    +   VFS  +   +MLCF G Y 
Sbjct: 15  EAEGVTSFSELLMFSDGVLSSSSDHQPEGNVGDGGEDSLGFVFSG-KTGSRMLCFSGGY- 72

Query: 58  KQNDGDIVVYGETTATAAATPKS----GITCSDSSSASSGNNSSANTPSKSTKKRNGSAQ 113
            QND + +    +  T+  +        I C +S+ A + + S+ +    STKKR G+  
Sbjct: 73  -QNDDESLFLEPSVPTSGVSDLDPSCIKIDCRNSNDACTVDKSTKS----STKKRTGTGN 127

Query: 114 ESVPRSNLATTTSPVVSQRTSKKTKAADNPSSTAHAKAKKEKLGDRITALQQLVSPFGKT 173
                 N          ++  KK K   + SS   AK +KE+LG+RI ALQQLVSP+GKT
Sbjct: 128 GQESDQN----------RKPGKKGKRNQDKSSVGIAKVRKERLGERIAALQQLVSPYGKT 177

Query: 174 DTASVLHEAMGYIRFLHDQVQVLCSPYLQHHQHEGGENGGE----ESRKDLKSKGLCLVP 229
           D ASVLHEAMGYI+FL DQ+QVLCSPYL +H  +GG   G+       KDL+S+GLCLVP
Sbjct: 178 DAASVLHEAMGYIKFLQDQIQVLCSPYLINHSLDGGVVTGDVMAAMKAKDLRSRGLCLVP 237

Query: 230 VACTVHVANSNGADFWAPAMGSNVSSPA 257
           V+ TVHV NSNGADFW+PA   + +SP+
Sbjct: 238 VSSTVHVENSNGADFWSPATMGHTTSPS 265

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	271
TAIR|locus:2007263	250	AT1G49830 [Arabidopsis thalian	0.568	0.616	0.472	1.7e-38
TAIR|locus:2090679	270	AT3G19500 [Arabidopsis thalian	0.867	0.870	0.409	5.5e-38
TAIR|locus:2119901	407	AT4G29100 [Arabidopsis thalian	0.332	0.221	0.489	1.2e-30
TAIR|locus:2061609	362	AT2G20100 [Arabidopsis thalian	0.298	0.223	0.536	1.8e-29
UNIPROTKB|Q60EJ4	323	OSJNBa0017K09.4 "Os05g0501200	0.468	0.393	0.536	2.4e-28
UNIPROTKB|Q75IG3	268	P0499F10.3 "Putative uncharact	0.247	0.25	0.582	4.1e-28
UNIPROTKB|Q6K7V4	397	P0017G06.33 "Ethylene-responsi	0.247	0.168	0.671	3e-27
UNIPROTKB|Q7X7U7	156	OSJNBb0091E11.4 "OJ990528_30.9	0.516	0.897	0.457	1.2e-26
UNIPROTKB|Q8L4Y9	434	OJ1103_E04.128 "BHLH transcrip	0.431	0.269	0.5	4.1e-26
UNIPROTKB|Q5NB28	406	P0485D09.22 "Os01g0230200 prot	0.335	0.224	0.463	4.5e-25

TAIR|locus:2007263 AT1G49830 [Arabidopsis thaliana (taxid:3702)]

 Score = 346 (126.9 bits), Expect = 1.7e-38, Sum P(2) = 1.7e-38
 Identities = 76/161 (47%), Positives = 100/161 (62%)

Query:   118 RSNLATTTSP----VVSQRTSKKTKAADNPSSTAHAKAKKEKLGDRITALQQLVSPFGKT 173
             RSN  T ++     V   +  K+ K     SS  +AK KKEK+G++IT LQ LVSP+GKT
Sbjct:    88 RSNKKTGSADGHDRVCDPKPGKRCKRDQKKSSLGNAKVKKEKVGEKITTLQHLVSPYGKT 147

Query:   174 DTASVLHEAMGYIRFLHDQVQVLCSPYLQHH---QHXXXXXXXXXSRKDLKSKGLCLVPV 230
             D ASVLHE MGYI+FL DQVQVL +PY +H+                K+L+S GLCLVP+
Sbjct:   148 DAASVLHETMGYIKFLQDQVQVLSTPYFKHNPLDDEDTGEVNPTMKVKELRSNGLCLVPL 207

Query:   231 ACTVHVANSNGADFWAPAMGSNVSSPAGAPAVTITKQQQLK 271
             A TVHVAN+NGAD W+ A+ S ++S   +  V I + +  K
Sbjct:   208 AWTVHVANTNGADLWSSAILSPLTSHTNSEPVEIVEVKSHK 248

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2090679 AT3G19500 [Arabidopsis thaliana (taxid:3702)]

 Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
 Identities = 108/264 (40%), Positives = 135/264 (51%)

Query:    10 EQGSTTSFSQLL-FSDDVVLGL----------DFNNYACSSVFSANEKPPKMLCF-GDYN 57
             E    TSFS+LL FSD V+             D    +   VFS  +   +MLCF G Y 
Sbjct:    15 EAEGVTSFSELLMFSDGVLSSSSDHQPEGNVGDGGEDSLGFVFSG-KTGSRMLCFSGGY- 72

Query:    58 KQNDGDIVVYGETTATAAATPKXXXXXXXXXXXXXXXXXXXXXXXKSTKKRNGSAQESVP 117
              QND + +    +  T+  +                          STKKR G+      
Sbjct:    73 -QNDDESLFLEPSVPTSGVSDLDPSCIKIDCRNSNDACTVDKSTKSSTKKRTGTGNGQES 131

Query:   118 RSNLATTTSPVVSQRTSKKTKAADNPSSTAHAKAKKEKLGDRITALQQLVSPFGKTDTAS 177
               N          ++  KK K     SS   AK +KE+LG+RI ALQQLVSP+GKTD AS
Sbjct:   132 DQN----------RKPGKKGKRNQEKSSVGIAKVRKERLGERIAALQQLVSPYGKTDAAS 181

Query:   178 VLHEAMGYIRFLHDQVQVLCSPYLQHHQHXXXXXX----XXXSRKDLKSKGLCLVPVACT 233
             VLHEAMGYI+FL DQ+QVLCSPYL +H                 KDL+S+GLCLVPV+ T
Sbjct:   182 VLHEAMGYIKFLQDQIQVLCSPYLINHSLDGGVVTGDVMAAMKAKDLRSRGLCLVPVSST 241

Query:   234 VHVANSNGADFWAPAMGSNVSSPA 257
             VHV NSNGADFW+PA   + +SP+
Sbjct:   242 VHVENSNGADFWSPATMGHTTSPS 265

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2119901 AT4G29100 [Arabidopsis thaliana (taxid:3702)]

 Score = 217 (81.4 bits), Expect = 1.2e-30, Sum P(2) = 1.2e-30
 Identities = 48/98 (48%), Positives = 60/98 (61%)

Query:   117 PRSNLATTTSPVVSQRTSKKTKAADNPSSTAHAKAKKEKLGDRITALQQLVSPFGKTDTA 176
             P    +   S  +   T+KK +   +PSS +  K +KEKLG RI AL QLVSPFGKTDTA
Sbjct:   230 PPDRSSECNSLEIGGSTNKKPRLQPSPSSQSTLKVRKEKLGGRIAALHQLVSPFGKTDTA 289

Query:   177 SVLHEAMGYIRFLHDQVQVLCSPY--------LQHHQH 206
             SVL EA+GYIRFL  Q++ L  PY        ++H QH
Sbjct:   290 SVLSEAIGYIRFLQSQIEALSHPYFGTTASGNMRHQQH 327

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2061609 AT2G20100 [Arabidopsis thaliana (taxid:3702)]

 Score = 209 (78.6 bits), Expect = 1.8e-29, Sum P(2) = 1.8e-29
 Identities = 44/82 (53%), Positives = 55/82 (67%)

Query:   120 NLAT-TTSPVVSQRTSKKTKAADNPSSTAHAKAKKEKLGDRITALQQLVSPFGKTDTASV 178
             NL+   +S ++    + K      PSS +  K +KEKLG RI +L QLVSPFGKTDTASV
Sbjct:   188 NLSECNSSEMIGSSFANKKPKLQVPSSQSTLKVRKEKLGGRIASLHQLVSPFGKTDTASV 247

Query:   179 LHEAMGYIRFLHDQVQVLCSPY 200
             L EA+GYIRFLH Q++ L  PY
Sbjct:   248 LSEAIGYIRFLHSQIEALSLPY 269

GO:0005634 "nucleus" evidence=ISM

UNIPROTKB|Q60EJ4 OSJNBa0017K09.4 "Os05g0501200 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 74/138 (53%), Positives = 87/138 (63%)

Query:   122 ATTTSPVVSQRTSKKTKAADNPSSTAHAKAKKEKLGDRITALQQLVSPFGKTDTASVLHE 181
             AT +SP  S   +KK +  + PS     K +KEKLGDRITALQQLVSPFGKTDTASVLHE
Sbjct:   184 ATRSSPG-SPAAAKKPRI-EAPSPMPTFKVRKEKLGDRITALQQLVSPFGKTDTASVLHE 241

Query:   182 AMGYIRFLHDQVQVLCSPYL--------QHHQHXXXXXXXXXSRK-DLKSKGLCLVPVAC 232
             A+ YI+FLHDQV  L SPYL        QH Q           ++ DL+S+GLCLVPVA 
Sbjct:   242 AIEYIKFLHDQVASLSSPYLRCGRPVQLQHQQGSHKVNGNCEGKQLDLRSRGLCLVPVAS 301

Query:   233 TVHVANSNGADFWAPAMG 250
             T  VA+    +FW P  G
Sbjct:   302 TYTVASETATEFWHPTFG 319

GO:0005634 "nucleus" evidence=IC

UNIPROTKB|Q75IG3 P0499F10.3 "Putative uncharacterized protein P0499F10.3" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 201 (75.8 bits), Expect = 4.1e-28, Sum P(2) = 4.1e-28
 Identities = 39/67 (58%), Positives = 50/67 (74%)

Query:   135 KKTKAADNPSSTAHAKAKKEKLGDRITALQQLVSPFGKTDTASVLHEAMGYIRFLHDQVQ 194
             KK +   + S+ +  K +KE+LGDRITAL Q+VSPFGKTDTASVL E +GYIRFL  Q++
Sbjct:   109 KKARVQASSSAQSTLKVRKERLGDRITALHQIVSPFGKTDTASVLQETIGYIRFLLSQIE 168

Query:   195 VLCSPYL 201
              L  PY+
Sbjct:   169 ALSYPYM 175

GO:0005634 "nucleus" evidence=IC

UNIPROTKB|Q6K7V4 P0017G06.33 "Ethylene-responsive family protein-like" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 225 (84.3 bits), Expect = 3.0e-27, Sum P(2) = 3.0e-27
 Identities = 45/67 (67%), Positives = 52/67 (77%)

Query:   135 KKTKAADNPSSTAHAKAKKEKLGDRITALQQLVSPFGKTDTASVLHEAMGYIRFLHDQVQ 194
             KK +  +   + A  K +KEKLGDRITAL QLVSPFGKTDTASVL EA+GYIRFLH Q++
Sbjct:   222 KKARTQEPSPAQATVKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLHGQIE 281

Query:   195 VLCSPYL 201
              L SPYL
Sbjct:   282 ALSSPYL 288

GO:0005634 "nucleus" evidence=IC

UNIPROTKB|Q7X7U7 OSJNBb0091E11.4 "OJ990528_30.9 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 65/142 (45%), Positives = 87/142 (61%)

Query:   107 KRNGSAQESVPRSNLATTTSPVVSQRTSKKTKAADNPSSTAHAKAKKEKLGDRITALQQL 166
             KRN +      ++ + T++S      TSKK +      +    K KK+K+G+R+ ALQQL
Sbjct:    11 KRNHNESYFTGKAAV-TSSSEEFGSMTSKKPRNTSPRDAPVSPKEKKDKIGERVAALQQL 69

Query:   167 VSPFGKTDTASVLHEAMGYIRFLHDQVQVLCSPYLQHHQHXXXXXXXXXSRKDLKSKGLC 226
             VSPFGKTDTASVL EA GYI+FLH Q++VL SPY++                 L+++GLC
Sbjct:    70 VSPFGKTDTASVLQEASGYIKFLHQQLEVLSSPYMRAPP-VPGAAPEDPDHYSLRNRGLC 128

Query:   227 LVPVACTVHVANSNGADFWAPA 248
             LVPV  T+ +  SNGAD WAPA
Sbjct:   129 LVPVDQTLQLTQSNGADLWAPA 150

GO:0005634 "nucleus" evidence=IC

UNIPROTKB|Q8L4Y9 OJ1103_E04.128 "BHLH transcription factor-like protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 295 (108.9 bits), Expect = 4.1e-26, P = 4.1e-26
 Identities = 63/126 (50%), Positives = 85/126 (67%)

Query:   130 SQRTSKKTKAADNPSSTAHAKAKKEKLGDRITALQQLVSPFGKTDTASVLHEAMGYIRFL 189
             S+ ++KK+K  +  S T+  K  K KLGD+ITALQQ+VSPFGKTDTASVL+EA+ YI++L
Sbjct:   302 SEGSTKKSKH-EATSPTSSLKVPKVKLGDKITALQQIVSPFGKTDTASVLYEAINYIKWL 360

Query:   190 HDQVQVLCSPYLQHHQHXXXXXXXXXSRK-------DLKSKGLCLVPVACTVHV-ANSNG 241
             H+QVQ+L  PY++              RK       DL+S+GLCLVPV+CT  V  ++NG
Sbjct:   361 HEQVQLLSDPYMKSSSSKDYNAWGGLDRKEKADAEVDLRSRGLCLVPVSCTPQVYRDNNG 420

Query:   242 ADFWAP 247
              D+W P
Sbjct:   421 PDYWTP 426

GO:0005634 "nucleus" evidence=IC

UNIPROTKB|Q5NB28 P0485D09.22 "Os01g0230200 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 204 (76.9 bits), Expect = 4.5e-25, Sum P(2) = 4.5e-25
 Identities = 45/97 (46%), Positives = 60/97 (61%)

Query:   105 TKKRNGSAQESVPRSNLATTTSPVVSQRTSKKTKAADNPSSTAHAKAKKEKLGDRITALQ 164
             T+K +    ++    N   T S +      KK +   + S+ +  K +KE+LGDRITAL 
Sbjct:   217 TRKHHAGQSDNSSECNSTETGSAL------KKARVQASSSAQSTLKVRKERLGDRITALH 270

Query:   165 QLVSPFGKTDTASVLHEAMGYIRFLHDQVQVLCSPYL 201
             Q+VSPFGKTDTASVL E +GYIRFL  Q++ L  PYL
Sbjct:   271 QIVSPFGKTDTASVLQETIGYIRFLLGQIEALSYPYL 307

GO:0005634 "nucleus" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LT67	BH113_ARATH	No assigned EC number	0.4291	0.8523	0.8555	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh1_pg.C_scaffold_3001848 annotation not avaliable (270 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	271
smart00353	53	smart00353, HLH, helix loop helix domain	8e-05
cd00083	60	cd00083, HLH, Helix-loop-helix domain, found in sp	0.001

>gnl|CDD|197674 smart00353, HLH, helix loop helix domain

 Score = 39.1 bits (92), Expect = 8e-05
 Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 5/45 (11%)

Query: 154 EKLGDRITALQQLVSPFG----KTDTASVLHEAMGYIRFLHDQVQ 194
            K+ +    L+ L+ P      K   A +L  A+ YI+ L +++Q
Sbjct: 9   RKINEAFDELRSLL-PTLPKNKKLSKAEILRLAIEYIKSLQEELQ 52

Length = 53

>gnl|CDD|238036 cd00083, HLH, Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

 Score = 36.0 bits (84), Expect = 0.001
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 3/44 (6%)

Query: 154 EKLGDRITALQQLVSPFG---KTDTASVLHEAMGYIRFLHDQVQ 194
           E++ D    L+ L+       K   A +L +A+ YI+ L + +Q
Sbjct: 17  ERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ 60

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and have a PAS domain which allows the dimerization between PAS proteins, the binding of small molecules (e.g., dioxin), and interactions with non-PAS proteins. Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	271
smart00353	53	HLH helix loop helix domain.	99.21
cd00083	60	HLH Helix-loop-helix domain, found in specific DNA	99.2
PF00010	55	HLH: Helix-loop-helix DNA-binding domain only nucl	98.99
KOG1319	229	consensus bHLHZip transcription factor BIGMAX [Tra	98.18
KOG1318	411	consensus Helix loop helix transcription factor EB	98.02
KOG4304	250	consensus Transcriptional repressors of the hairy/	97.49
PLN03217	93	transcription factor ATBS1; Provisional	97.17
KOG3561	803	consensus Aryl-hydrocarbon receptor nuclear transl	96.76
KOG2483	232	consensus Upstream transcription factor 2/L-myc-2	96.64
KOG3960	284	consensus Myogenic helix-loop-helix transcription	96.33
KOG2588	953	consensus Predicted DNA-binding protein [Transcrip	95.58
KOG4029	228	consensus Transcription factor HAND2/Transcription	94.54
KOG0561	373	consensus bHLH transcription factor [Transcription	94.54
KOG3560	712	consensus Aryl-hydrocarbon receptor [Transcription	83.7

>smart00353 HLH helix loop helix domain

Probab=99.21  E-value=2.6e-11  Score=83.95  Aligned_cols=47  Identities=23%  Similarity=0.467  Sum_probs=44.0

Q ss_pred             HHHHHHHHhhhhHHHhhhcCCC---CCCCCchhhHHHHHHHHHHHHHHHH
Q 036196          148 HAKAKKEKLGDRITALQQLVSP---FGKTDTASVLHEAMGYIRFLHDQVQ  194 (271)
Q Consensus       148 seR~RReKI~ERi~aLQ~LVP~---~~KtDtASVLdEAI~YIKfLQ~QVq  194 (271)
                      .||.||++|++.|..|+.+||.   ..|+|+++||.+||+||+.|+.+++
T Consensus         3 ~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~   52 (53)
T smart00353        3 RERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ   52 (53)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            4899999999999999999994   6689999999999999999999986

>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

Probab=99.20  E-value=2e-11  Score=85.66  Aligned_cols=48  Identities=25%  Similarity=0.522  Sum_probs=45.0

Q ss_pred             hHHHHHHHHhhhhHHHhhhcCCCC---CCCCchhhHHHHHHHHHHHHHHHH
Q 036196          147 AHAKAKKEKLGDRITALQQLVSPF---GKTDTASVLHEAMGYIRFLHDQVQ  194 (271)
Q Consensus       147 ~seR~RReKI~ERi~aLQ~LVP~~---~KtDtASVLdEAI~YIKfLQ~QVq  194 (271)
                      ..||.||++|++.|..|+.+||+.   .|+|+++||+.||+||++|+.+++
T Consensus        10 ~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~~   60 (60)
T cd00083          10 LRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ   60 (60)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence            458999999999999999999999   789999999999999999999863

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and

>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt)

Probab=98.99  E-value=5.6e-10  Score=78.67  Aligned_cols=44  Identities=25%  Similarity=0.538  Sum_probs=41.4

Q ss_pred             hHHHHHHHHhhhhHHHhhhcCCCC-----CCCCchhhHHHHHHHHHHHH
Q 036196          147 AHAKAKKEKLGDRITALQQLVSPF-----GKTDTASVLHEAMGYIRFLH  190 (271)
Q Consensus       147 ~seR~RReKI~ERi~aLQ~LVP~~-----~KtDtASVLdEAI~YIKfLQ  190 (271)
                      ..||+||++|++.|..|+.+||..     .|+|+++||..||+||+.||
T Consensus         7 ~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq   55 (55)
T PF00010_consen    7 ERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ   55 (55)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence            458999999999999999999987     67999999999999999997

; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....

>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]

Probab=98.18  E-value=9.9e-07  Score=79.69  Aligned_cols=48  Identities=25%  Similarity=0.463  Sum_probs=42.4

Q ss_pred             HHHHHHHHhhhhHHHhhhcCCCC-------CCCCchhhHHHHHHHHHHHHHHHHH
Q 036196          148 HAKAKKEKLGDRITALQQLVSPF-------GKTDTASVLHEAMGYIRFLHDQVQV  195 (271)
Q Consensus       148 seR~RReKI~ERi~aLQ~LVP~~-------~KtDtASVLdEAI~YIKfLQ~QVq~  195 (271)
                      .||+||+-|+.-..-||.|||.+       .|+.+|-||..+|+||.+|+.++..
T Consensus        69 aEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~k  123 (229)
T KOG1319|consen   69 AEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKK  123 (229)
T ss_pred             HHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            48999999999999999999955       3778999999999999999876643

>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]

Probab=98.02  E-value=5.6e-06  Score=81.10  Aligned_cols=52  Identities=27%  Similarity=0.494  Sum_probs=45.0

Q ss_pred             CCCCchHHHHHHHHhhhhHHHhhhcCCCC----CCCCchhhHHHHHHHHHHHHHHHH
Q 036196          142 NPSSTAHAKAKKEKLGDRITALQQLVSPF----GKTDTASVLHEAMGYIRFLHDQVQ  194 (271)
Q Consensus       142 ~p~s~~seR~RReKI~ERi~aLQ~LVP~~----~KtDtASVLdEAI~YIKfLQ~QVq  194 (271)
                      +-|.. -||+||++||+||..|..|||.+    .|..|..||.-+.+||+.||.--+
T Consensus       235 d~HNe-VERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q  290 (411)
T KOG1318|consen  235 DNHNE-VERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQ  290 (411)
T ss_pred             hhhhH-HHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHH
Confidence            33444 48999999999999999999988    367799999999999999987665

>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]

Probab=97.49  E-value=6.1e-05  Score=69.37  Aligned_cols=49  Identities=18%  Similarity=0.324  Sum_probs=43.4

Q ss_pred             chHHHHHHHHhhhhHHHhhhcCCCC--------CCCCchhhHHHHHHHHHHHHHHHHH
Q 036196          146 TAHAKAKKEKLGDRITALQQLVSPF--------GKTDTASVLHEAMGYIRFLHDQVQV  195 (271)
Q Consensus       146 ~~seR~RReKI~ERi~aLQ~LVP~~--------~KtDtASVLdEAI~YIKfLQ~QVq~  195 (271)
                      +. ||+||.|||+=|..|+.|||-.        .|++||.||+=|++|+|.||.+.+.
T Consensus        38 l~-EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~   94 (250)
T KOG4304|consen   38 LL-EKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQA   94 (250)
T ss_pred             hH-HHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccccc
Confidence            45 8999999999999999999933        6788999999999999999987643

>PLN03217 transcription factor ATBS1; Provisional

Probab=97.17  E-value=0.00087  Score=54.19  Aligned_cols=48  Identities=35%  Similarity=0.548  Sum_probs=42.0

Q ss_pred             HHHhhhhHHHhhhcCCCC------CCCCchhhHHHHHHHHHHHHHHHHHhcCcc
Q 036196          153 KEKLGDRITALQQLVSPF------GKTDTASVLHEAMGYIRFLHDQVQVLCSPY  200 (271)
Q Consensus       153 ReKI~ERi~aLQ~LVP~~------~KtDtASVLdEAI~YIKfLQ~QVq~Ls~~~  200 (271)
                      -+.|+|-+..||+|+|..      .|...+-||.|+..||+.||.+|..|+...
T Consensus        19 ddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerL   72 (93)
T PLN03217         19 EDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERL   72 (93)
T ss_pred             HHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            389999999999999954      456778899999999999999999998643

>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]

Probab=96.76  E-value=0.0014  Score=69.21  Aligned_cols=45  Identities=24%  Similarity=0.448  Sum_probs=42.6

Q ss_pred             HHHHHHHHhhhhHHHhhhcCCCCC----CCCchhhHHHHHHHHHHHHHH
Q 036196          148 HAKAKKEKLGDRITALQQLVSPFG----KTDTASVLHEAMGYIRFLHDQ  192 (271)
Q Consensus       148 seR~RReKI~ERi~aLQ~LVP~~~----KtDtASVLdEAI~YIKfLQ~Q  192 (271)
                      .||+||+|+|.=|..|-.|||.+.    |+||-.||..||.+||.++++
T Consensus        27 ~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~   75 (803)
T KOG3561|consen   27 IEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ   75 (803)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence            389999999999999999999886    899999999999999999986

>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]

Probab=96.64  E-value=0.0041  Score=57.21  Aligned_cols=55  Identities=22%  Similarity=0.279  Sum_probs=44.8

Q ss_pred             CCCCchHHHHHHHHhhhhHHHhhhcCCCCCC---CCchhhHHHHHHHHHHHHHHHHHh
Q 036196          142 NPSSTAHAKAKKEKLGDRITALQQLVSPFGK---TDTASVLHEAMGYIRFLHDQVQVL  196 (271)
Q Consensus       142 ~p~s~~seR~RReKI~ERi~aLQ~LVP~~~K---tDtASVLdEAI~YIKfLQ~QVq~L  196 (271)
                      ..++.+-||+||..|.+.+..|+.+||...-   -++++||+.|+.||+.|+.+....
T Consensus        60 R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~  117 (232)
T KOG2483|consen   60 RAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQ  117 (232)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHH
Confidence            3455566899999999999999999997732   237999999999999988766443

>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]

Probab=96.33  E-value=0.0061  Score=57.43  Aligned_cols=52  Identities=17%  Similarity=0.249  Sum_probs=44.2

Q ss_pred             hHHHHHHHHhhhhHHHhhh-cCCCCC-CCCchhhHHHHHHHHHHHHHHHHHhcC
Q 036196          147 AHAKAKKEKLGDRITALQQ-LVSPFG-KTDTASVLHEAMGYIRFLHDQVQVLCS  198 (271)
Q Consensus       147 ~seR~RReKI~ERi~aLQ~-LVP~~~-KtDtASVLdEAI~YIKfLQ~QVq~Ls~  198 (271)
                      +-||+|=.|+||-|.+|.+ -+++-+ .+-|..||-.||+||..||+-++.+..
T Consensus       124 MRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~  177 (284)
T KOG3960|consen  124 MRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQ  177 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            4578888999999999965 455554 489999999999999999999888875

>KOG2588 consensus Predicted DNA-binding protein [Transcription]

Probab=95.58  E-value=0.02  Score=61.44  Aligned_cols=55  Identities=27%  Similarity=0.352  Sum_probs=48.4

Q ss_pred             CCCchHHHHHHHHhhhhHHHhhhcCCCC-CCCCchhhHHHHHHHHHHHHHHHHHhcC
Q 036196          143 PSSTAHAKAKKEKLGDRITALQQLVSPF-GKTDTASVLHEAMGYIRFLHDQVQVLCS  198 (271)
Q Consensus       143 p~s~~seR~RReKI~ERi~aLQ~LVP~~-~KtDtASVLdEAI~YIKfLQ~QVq~Ls~  198 (271)
                      .|.+- ||+=|--||+||..|+.+||+- -|+.+..+|.-||+||++|+..-+.+..
T Consensus       279 AHN~I-EKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~  334 (953)
T KOG2588|consen  279 AHNII-EKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKL  334 (953)
T ss_pred             hhhHH-HHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccch
Confidence            45554 8999999999999999999988 6899999999999999999988766654

>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]

Probab=94.54  E-value=0.037  Score=49.42  Aligned_cols=53  Identities=19%  Similarity=0.341  Sum_probs=46.2

Q ss_pred             HHHHHHHHhhhhHHHhhhcCCC----CCCCCchhhHHHHHHHHHHHHHHHHHhcCcc
Q 036196          148 HAKAKKEKLGDRITALQQLVSP----FGKTDTASVLHEAMGYIRFLHDQVQVLCSPY  200 (271)
Q Consensus       148 seR~RReKI~ERi~aLQ~LVP~----~~KtDtASVLdEAI~YIKfLQ~QVq~Ls~~~  200 (271)
                      .||.|=+-+|..+..||.+||.    -.|+-|...|-.||.||++|+.-++.-...+
T Consensus       116 RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~~  172 (228)
T KOG4029|consen  116 RERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAPL  172 (228)
T ss_pred             hhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccCC
Confidence            3788888999999999999994    4578999999999999999999887766654

>KOG0561 consensus bHLH transcription factor [Transcription]

Probab=94.54  E-value=0.018  Score=55.78  Aligned_cols=46  Identities=17%  Similarity=0.317  Sum_probs=41.6

Q ss_pred             HHHHHHHhhhhHHHhhhcCCC--CCCCCchhhHHHHHHHHHHHHHHHH
Q 036196          149 AKAKKEKLGDRITALQQLVSP--FGKTDTASVLHEAMGYIRFLHDQVQ  194 (271)
Q Consensus       149 eR~RReKI~ERi~aLQ~LVP~--~~KtDtASVLdEAI~YIKfLQ~QVq  194 (271)
                      ||+|=.-||--|..|+.|+|.  +.|+.||-||+.+.+||..|..+-.
T Consensus        68 ERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt  115 (373)
T KOG0561|consen   68 ERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKT  115 (373)
T ss_pred             HHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhccc
Confidence            899999999999999999995  4789999999999999998876543

>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]

Probab=83.70  E-value=1  Score=47.00  Aligned_cols=43  Identities=28%  Similarity=0.474  Sum_probs=37.5

Q ss_pred             CCchHHHHHHHHhhhhHHHhhhcCC----CCCCCCchhhHHHHHHHHH
Q 036196          144 SSTAHAKAKKEKLGDRITALQQLVS----PFGKTDTASVLHEAMGYIR  187 (271)
Q Consensus       144 ~s~~seR~RReKI~ERi~aLQ~LVP----~~~KtDtASVLdEAI~YIK  187 (271)
                      .|.++ |+-|+|||--+..|-.|+|    .+.|+|+-|||.-++-|++
T Consensus        29 kSNPS-KRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr   75 (712)
T KOG3560|consen   29 KSNPS-KRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLR   75 (712)
T ss_pred             cCCcc-hhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHH
Confidence            34554 7788999999999999999    4589999999999999985

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	271
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	2e-06

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Length = 82

 Score = 43.5 bits (103), Expect = 2e-06
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 4/55 (7%)

Query: 146 TAHAKAKK---EKLGDRITALQQLV-SPFGKTDTASVLHEAMGYIRFLHDQVQVL 196
           TAH   +K     + D+I  L+ LV     K + ++VL +A+ YIRFL    Q L
Sbjct: 8   TAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKL 62

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	271
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	99.43
4ati_A	118	MITF, microphthalmia-associated transcription fact	99.4
4h10_B	71	Circadian locomoter output cycles protein kaput; B	99.3
1a0a_A	63	BHLH, protein (phosphate system positive regulator	99.26
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	99.25
4h10_A	73	ARYL hydrocarbon receptor nuclear translocator-LI	99.19
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	99.14
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	99.14
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	99.11
3u5v_A	76	Protein MAX, transcription factor E2-alpha chimer;	99.0
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	98.81
4f3l_A	361	Mclock, circadian locomoter output cycles protein	98.67
2ql2_B	60	Neurod1, neurogenic differentiation factor 1; basi	98.48
1mdy_A	68	Protein (MYOD BHLH domain); protein-DNA complex, t	98.47
4f3l_B	387	BMAL1B; BHLH, PAS, circadian rhythm proteins, tran	98.44
2lfh_A	68	DNA-binding protein inhibitor ID-3; structural gen	97.93
4ath_A	83	MITF, microphthalmia-associated transcription fact	97.9
4aya_A	97	DNA-binding protein inhibitor ID-2; cell cycle; 2.	97.14

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C

Probab=99.43  E-value=9.5e-14  Score=105.91  Aligned_cols=53  Identities=34%  Similarity=0.484  Sum_probs=49.9

Q ss_pred             hHHHHHHHHhhhhHHHhhhcCCCC-CCCCchhhHHHHHHHHHHHHHHHHHhcCc
Q 036196          147 AHAKAKKEKLGDRITALQQLVSPF-GKTDTASVLHEAMGYIRFLHDQVQVLCSP  199 (271)
Q Consensus       147 ~seR~RReKI~ERi~aLQ~LVP~~-~KtDtASVLdEAI~YIKfLQ~QVq~Ls~~  199 (271)
                      ..||+||++|+++|.+|+.|||++ .|+|+|+||.+||+||++||.+++.|...
T Consensus        12 ~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e   65 (82)
T 1am9_A           12 AIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQE   65 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            458999999999999999999998 89999999999999999999999998863

>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A

Probab=99.40  E-value=2e-13  Score=110.65  Aligned_cols=64  Identities=19%  Similarity=0.320  Sum_probs=49.6

Q ss_pred             cccccCCCCCCCchHHHHHHHHhhhhHHHhhhcCCCCC----CCCchhhHHHHHHHHHHHHHHHHHhcC
Q 036196          134 SKKTKAADNPSSTAHAKAKKEKLGDRITALQQLVSPFG----KTDTASVLHEAMGYIRFLHDQVQVLCS  198 (271)
Q Consensus       134 ~kK~~~a~~p~s~~seR~RReKI~ERi~aLQ~LVP~~~----KtDtASVLdEAI~YIKfLQ~QVq~Ls~  198 (271)
                      ..|.+....+|++. ||+||++|+++|..|+.|||++.    |+|+|+||..||+||++||.+++.|..
T Consensus        21 ~~k~~~kr~~Hn~~-ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~   88 (118)
T 4ati_A           21 LAKERQKKDNHNLI-ERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKD   88 (118)
T ss_dssp             ----------CHHH-HHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhhhhhhhhhHH-HHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444445567665 89999999999999999999874    678999999999999999999999985

>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.30  E-value=3.1e-12  Score=96.73  Aligned_cols=51  Identities=18%  Similarity=0.305  Sum_probs=47.6

Q ss_pred             HHHHHHHHhhhhHHHhhhcCCCC-CCCCchhhHHHHHHHHHHHHHHHHHhcC
Q 036196          148 HAKAKKEKLGDRITALQQLVSPF-GKTDTASVLHEAMGYIRFLHDQVQVLCS  198 (271)
Q Consensus       148 seR~RReKI~ERi~aLQ~LVP~~-~KtDtASVLdEAI~YIKfLQ~QVq~Ls~  198 (271)
                      .||+||++||++|..|+.|||+. .|+|+++||..||+||+.||.++..|+-
T Consensus        15 iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~~   66 (71)
T 4h10_B           15 SEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLEH   66 (71)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHHh
Confidence            48999999999999999999975 5999999999999999999999988864

>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1

Probab=99.26  E-value=5.3e-13  Score=98.00  Aligned_cols=51  Identities=22%  Similarity=0.356  Sum_probs=44.6

Q ss_pred             CCCchHHHHHHHHhhhhHHHhhhcCCCC-------CCCCchhhHHHHHHHHHHHHHHHH
Q 036196          143 PSSTAHAKAKKEKLGDRITALQQLVSPF-------GKTDTASVLHEAMGYIRFLHDQVQ  194 (271)
Q Consensus       143 p~s~~seR~RReKI~ERi~aLQ~LVP~~-------~KtDtASVLdEAI~YIKfLQ~QVq  194 (271)
                      .|.++ ||.||++|++.|..|+.|||++       +|..+|+||+.||+||+.||.+|+
T Consensus         5 ~H~~a-Er~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~   62 (63)
T 1a0a_A            5 SHKHA-EQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS   62 (63)
T ss_dssp             GGGGG-THHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred             chhHH-HHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence            34555 8999999999999999999965       566799999999999999998763

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1

Probab=99.25  E-value=2.1e-12  Score=93.76  Aligned_cols=48  Identities=17%  Similarity=0.355  Sum_probs=44.2

Q ss_pred             chHHHHHHHHhhhhHHHhhhcCCCCC------CCCchhhHHHHHHHHHHHHHHH
Q 036196          146 TAHAKAKKEKLGDRITALQQLVSPFG------KTDTASVLHEAMGYIRFLHDQV  193 (271)
Q Consensus       146 ~~seR~RReKI~ERi~aLQ~LVP~~~------KtDtASVLdEAI~YIKfLQ~QV  193 (271)
                      ...||+||++|++.|..|+.|||++.      |+|+|+||.+||+||+.||.+.
T Consensus        10 ~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~   63 (65)
T 1an4_A           10 NEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN   63 (65)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred             chHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence            44599999999999999999999886      7899999999999999999875

>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.19  E-value=9.6e-13  Score=99.52  Aligned_cols=47  Identities=28%  Similarity=0.364  Sum_probs=42.7

Q ss_pred             CCchHHHHHHHHhhhhHHHhhhcCCCC----CCCCchhhHHHHHHHHHHHHH
Q 036196          144 SSTAHAKAKKEKLGDRITALQQLVSPF----GKTDTASVLHEAMGYIRFLHD  191 (271)
Q Consensus       144 ~s~~seR~RReKI~ERi~aLQ~LVP~~----~KtDtASVLdEAI~YIKfLQ~  191 (271)
                      |+.+ ||+||++||+.|..|+.|||.+    .|+|+|+||+.||+|||.||.
T Consensus        13 H~~~-ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~   63 (73)
T 4h10_A           13 HSQI-EKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG   63 (73)
T ss_dssp             HHHH-HHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred             cchH-HHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence            4444 8999999999999999999976    799999999999999999974

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=99.14  E-value=2.9e-11  Score=91.50  Aligned_cols=53  Identities=19%  Similarity=0.404  Sum_probs=48.8

Q ss_pred             chHHHHHHHHhhhhHHHhhhcCCCC--CCCCchhhHHHHHHHHHHHHHHHHHhcC
Q 036196          146 TAHAKAKKEKLGDRITALQQLVSPF--GKTDTASVLHEAMGYIRFLHDQVQVLCS  198 (271)
Q Consensus       146 ~~seR~RReKI~ERi~aLQ~LVP~~--~KtDtASVLdEAI~YIKfLQ~QVq~Ls~  198 (271)
                      +..||+||++|++.|..|+.+||.+  .|+++++||..||+||+.|+.+++.|..
T Consensus         7 n~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~   61 (83)
T 1nkp_B            7 NALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQ   61 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3459999999999999999999974  7899999999999999999999988875

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.14  E-value=3e-11  Score=91.13  Aligned_cols=53  Identities=19%  Similarity=0.404  Sum_probs=49.3

Q ss_pred             chHHHHHHHHhhhhHHHhhhcCCCC--CCCCchhhHHHHHHHHHHHHHHHHHhcC
Q 036196          146 TAHAKAKKEKLGDRITALQQLVSPF--GKTDTASVLHEAMGYIRFLHDQVQVLCS  198 (271)
Q Consensus       146 ~~seR~RReKI~ERi~aLQ~LVP~~--~KtDtASVLdEAI~YIKfLQ~QVq~Ls~  198 (271)
                      ...||+||.+|++.|..|+.+||.+  .|+++++||..||+||+.||.+++.|..
T Consensus        17 n~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~   71 (80)
T 1hlo_A           17 NALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQ   71 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4569999999999999999999976  6899999999999999999999999875

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.11  E-value=5.5e-11  Score=92.04  Aligned_cols=53  Identities=21%  Similarity=0.317  Sum_probs=48.4

Q ss_pred             chHHHHHHHHhhhhHHHhhhcCCCC---CCCCchhhHHHHHHHHHHHHHHHHHhcC
Q 036196          146 TAHAKAKKEKLGDRITALQQLVSPF---GKTDTASVLHEAMGYIRFLHDQVQVLCS  198 (271)
Q Consensus       146 ~~seR~RReKI~ERi~aLQ~LVP~~---~KtDtASVLdEAI~YIKfLQ~QVq~Ls~  198 (271)
                      +..||+||++|++.|..|+.+||..   .|+++++||..||+||++|+.+.+.|..
T Consensus        11 n~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~   66 (88)
T 1nkp_A           11 NVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLIS   66 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4569999999999999999999975   5999999999999999999999987764

>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*

Probab=99.00  E-value=1.5e-10  Score=88.00  Aligned_cols=56  Identities=18%  Similarity=0.209  Sum_probs=48.5

Q ss_pred             chHHHHHHHHhhhhHHHhhhcCCCC---CCC-CchhhHHHHHHHHHHHHHHHHHhcCccc
Q 036196          146 TAHAKAKKEKLGDRITALQQLVSPF---GKT-DTASVLHEAMGYIRFLHDQVQVLCSPYL  201 (271)
Q Consensus       146 ~~seR~RReKI~ERi~aLQ~LVP~~---~Kt-DtASVLdEAI~YIKfLQ~QVq~Ls~~~~  201 (271)
                      .+.||+||++|++.|..|+.+||.+   .|. .|..||..||+||++||.++++++..-+
T Consensus        10 N~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~~~~   69 (76)
T 3u5v_A           10 NALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNLNPL   69 (76)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCTT
T ss_pred             hHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            4569999999999999999999953   444 5778999999999999999999987544

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1

Probab=98.81  E-value=4.8e-09  Score=80.12  Aligned_cols=53  Identities=23%  Similarity=0.188  Sum_probs=48.0

Q ss_pred             chHHHHHHHHhhhhHHHhhhcCCCC---CCCCchhhHHHHHHHHHHHHHHHHHhcC
Q 036196          146 TAHAKAKKEKLGDRITALQQLVSPF---GKTDTASVLHEAMGYIRFLHDQVQVLCS  198 (271)
Q Consensus       146 ~~seR~RReKI~ERi~aLQ~LVP~~---~KtDtASVLdEAI~YIKfLQ~QVq~Ls~  198 (271)
                      ...||.||..|++.|.+|+.+||..   .|+.+++||..||+||+.|+.+.+.|..
T Consensus         6 N~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~   61 (80)
T 1nlw_A            6 NEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVH   61 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3459999999999999999999965   6789999999999999999999988765

>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=98.67  E-value=1.6e-08  Score=91.54  Aligned_cols=49  Identities=16%  Similarity=0.368  Sum_probs=42.7

Q ss_pred             CCchHHHHHHHHhhhhHHHhhhcCC-CCCCCCchhhHHHHHHHHHHHHHHH
Q 036196          144 SSTAHAKAKKEKLGDRITALQQLVS-PFGKTDTASVLHEAMGYIRFLHDQV  193 (271)
Q Consensus       144 ~s~~seR~RReKI~ERi~aLQ~LVP-~~~KtDtASVLdEAI~YIKfLQ~QV  193 (271)
                      |+.. ||+||+|||+.|..|+.||| +..|+||++||..||.|||.|+..-
T Consensus        16 ~~~~-e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~~   65 (361)
T 4f3l_A           16 RNKS-EKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKETT   65 (361)
T ss_dssp             ---C-HHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHH-HHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhhc
Confidence            4444 89999999999999999999 5679999999999999999998764

>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}

Probab=98.48  E-value=1.4e-07  Score=68.62  Aligned_cols=48  Identities=21%  Similarity=0.324  Sum_probs=43.5

Q ss_pred             hHHHHHHHHhhhhHHHhhhcCCCC---CCCCchhhHHHHHHHHHHHHHHHH
Q 036196          147 AHAKAKKEKLGDRITALQQLVSPF---GKTDTASVLHEAMGYIRFLHDQVQ  194 (271)
Q Consensus       147 ~seR~RReKI~ERi~aLQ~LVP~~---~KtDtASVLdEAI~YIKfLQ~QVq  194 (271)
                      +-||.|+..|++-|..|+.+||..   .|+.|..+|..||+||++||+.++
T Consensus         8 ~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~   58 (60)
T 2ql2_B            8 ARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR   58 (60)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence            458999999999999999999965   479999999999999999998763

>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*

Probab=98.47  E-value=1.1e-07  Score=71.03  Aligned_cols=48  Identities=19%  Similarity=0.303  Sum_probs=43.4

Q ss_pred             chHHHHHHHHhhhhHHHhhhcCCCC--CCCCchhhHHHHHHHHHHHHHHH
Q 036196          146 TAHAKAKKEKLGDRITALQQLVSPF--GKTDTASVLHEAMGYIRFLHDQV  193 (271)
Q Consensus       146 ~~seR~RReKI~ERi~aLQ~LVP~~--~KtDtASVLdEAI~YIKfLQ~QV  193 (271)
                      .+-||.|+..||+.|..|+.+||..  .|+.++.+|..||+||++||..+
T Consensus        17 N~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L   66 (68)
T 1mdy_A           17 TMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL   66 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            3458999999999999999999964  67999999999999999999865

>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=98.44  E-value=3.1e-08  Score=90.94  Aligned_cols=49  Identities=27%  Similarity=0.320  Sum_probs=43.9

Q ss_pred             CCCchHHHHHHHHhhhhHHHhhhcCC----CCCCCCchhhHHHHHHHHHHHHHH
Q 036196          143 PSSTAHAKAKKEKLGDRITALQQLVS----PFGKTDTASVLHEAMGYIRFLHDQ  192 (271)
Q Consensus       143 p~s~~seR~RReKI~ERi~aLQ~LVP----~~~KtDtASVLdEAI~YIKfLQ~Q  192 (271)
                      +|+.+ ||+||+|||+.|..|..|||    ...|+||++||..||.|||.|+.+
T Consensus        16 ~~~~~-ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~   68 (387)
T 4f3l_B           16 AHSQI-EKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA   68 (387)
T ss_dssp             HHHHH-HHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred             cccch-hhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcc
Confidence            34444 89999999999999999999    678999999999999999999853

>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=97.93  E-value=2.4e-06  Score=64.43  Aligned_cols=43  Identities=16%  Similarity=0.250  Sum_probs=39.6

Q ss_pred             HHHHHHHhhhhHHHhhhcCCCC---CCCCchhhHHHHHHHHHHHHH
Q 036196          149 AKAKKEKLGDRITALQQLVSPF---GKTDTASVLHEAMGYIRFLHD  191 (271)
Q Consensus       149 eR~RReKI~ERi~aLQ~LVP~~---~KtDtASVLdEAI~YIKfLQ~  191 (271)
                      ||.|...||+-|..||++||..   .|+.|..+|.-||+||..||.
T Consensus        22 ER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~   67 (68)
T 2lfh_A           22 PLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV   67 (68)
T ss_dssp             CSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence            6888999999999999999965   579999999999999999984

>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}

Probab=97.90  E-value=1.2e-05  Score=62.63  Aligned_cols=46  Identities=24%  Similarity=0.359  Sum_probs=40.8

Q ss_pred             HHHhhhhHHHhhhcCCCC----CCCCchhhHHHHHHHHHHHHHHHHHhcC
Q 036196          153 KEKLGDRITALQQLVSPF----GKTDTASVLHEAMGYIRFLHDQVQVLCS  198 (271)
Q Consensus       153 ReKI~ERi~aLQ~LVP~~----~KtDtASVLdEAI~YIKfLQ~QVq~Ls~  198 (271)
                      |..|+++|..|..|||..    .|.++++||..|++||+.||..++.+..
T Consensus         4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e   53 (83)
T 4ath_A            4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKD   53 (83)
T ss_dssp             HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            688999999999999965    4689999999999999999988776654

>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}

Probab=97.14  E-value=0.00066  Score=54.14  Aligned_cols=49  Identities=18%  Similarity=0.237  Sum_probs=42.8

Q ss_pred             HHHHHHHhhhhHHHhhhcCCCC---CCCCchhhHHHHHHHHHHHHHHHHHhc
Q 036196          149 AKAKKEKLGDRITALQQLVSPF---GKTDTASVLHEAMGYIRFLHDQVQVLC  197 (271)
Q Consensus       149 eR~RReKI~ERi~aLQ~LVP~~---~KtDtASVLdEAI~YIKfLQ~QVq~Ls  197 (271)
                      +|.|=..||+-|..||++||..   .|+.|..+|.-||+||+.||.-++.-.
T Consensus        33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~~   84 (97)
T 4aya_A           33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSHL   84 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence            5777788999999999999964   579999999999999999999886544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	271
d1uklc_	61	a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId	1e-11
d1nkpb_	83	a.38.1.1 (B:) Max protein {Human (Homo sapiens) [T	6e-07
d1am9a_	80	a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxI	4e-06
d1a0aa_	63	a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Sa	2e-05
d1an4a_	65	a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapien	2e-04

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 61

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.7 bits (137), Expect = 1e-11
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 154 EKLGDRITALQQLV-SPFGKTDTASVLHEAMGYIRFLHDQVQVL 196
             + D+I  L+ LV     K   + VL +A+ YI++L      L
Sbjct: 2   SSINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKL 45

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (104), Expect = 6e-07
 Identities = 10/56 (17%), Positives = 22/56 (39%), Gaps = 5/56 (8%)

Query: 146 TAHAKAKK---EKLGDRITALQQLVSPF--GKTDTASVLHEAMGYIRFLHDQVQVL 196
             H   ++   + + D   +L+  V      K   A +L +A  YI+++  +    
Sbjct: 4   AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTH 59

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (98), Expect = 4e-06
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 4/55 (7%)

Query: 146 TAHAKAKK---EKLGDRITALQQLV-SPFGKTDTASVLHEAMGYIRFLHDQVQVL 196
           TAH   +K     + D+I  L+ LV     K + ++VL +A+ YIRFL    Q L
Sbjct: 8   TAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKL 62

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 63

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.5 bits (92), Expect = 2e-05
 Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 10/59 (16%)

Query: 146 TAHAKAKK---EKLGDRITALQQLV-------SPFGKTDTASVLHEAMGYIRFLHDQVQ 194
            +H  A++    +L   +  L  L+       +       A+ +  A  YIR L     
Sbjct: 4   ESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (84), Expect = 2e-04
 Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 9/58 (15%)

Query: 146 TAHAKAKK---EKLGDRITALQQLV------SPFGKTDTASVLHEAMGYIRFLHDQVQ 194
             H + ++   +K+ + I  L +++      S         +L +A  YI+ L     
Sbjct: 7   AQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	271
d1uklc_	61	SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}	99.32
d1a0aa_	63	Pho4 B/HLH domain {Baker's yeast (Saccharomyces ce	99.23
d1mdya_	68	Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10	99.22
d1am9a_	80	SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}	99.21
d1nlwa_	79	Mad protein {Human (Homo sapiens) [TaxId: 9606]}	99.14
d1nkpb_	83	Max protein {Human (Homo sapiens) [TaxId: 9606]}	99.1
d1nkpa_	88	Myc proto-oncogene protein {Human (Homo sapiens) [	99.07
d1an4a_	65	Usf B/HLH domain {Human (Homo sapiens) [TaxId: 960	99.01

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.9e-13  Score=97.42  Aligned_cols=48  Identities=27%  Similarity=0.463  Sum_probs=44.5

Q ss_pred             HHHhhhhHHHhhhcCCCC-CCCCchhhHHHHHHHHHHHHHHHHHhcCcc
Q 036196          153 KEKLGDRITALQQLVSPF-GKTDTASVLHEAMGYIRFLHDQVQVLCSPY  200 (271)
Q Consensus       153 ReKI~ERi~aLQ~LVP~~-~KtDtASVLdEAI~YIKfLQ~QVq~Ls~~~  200 (271)
                      |++|+++|.+|+.|||++ .|+|+|+||.+||+||++||.|++.|...+
T Consensus         1 R~~in~~f~~L~~lvP~~~~K~~Ka~iL~~Ai~YI~~Lq~~~~~L~~e~   49 (61)
T d1uklc_           1 RSSINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKLRQEN   49 (61)
T ss_dssp             CCCHHHHHHHHHHHHSCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            678999999999999987 589999999999999999999999998644

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.23  E-value=1.9e-12  Score=92.36  Aligned_cols=47  Identities=21%  Similarity=0.364  Sum_probs=43.3

Q ss_pred             hHHHHHHHHhhhhHHHhhhcCCC-------CCCCCchhhHHHHHHHHHHHHHHH
Q 036196          147 AHAKAKKEKLGDRITALQQLVSP-------FGKTDTASVLHEAMGYIRFLHDQV  193 (271)
Q Consensus       147 ~seR~RReKI~ERi~aLQ~LVP~-------~~KtDtASVLdEAI~YIKfLQ~QV  193 (271)
                      ..||+||++|++.|..|+.|||+       ..|+|+|+||+.||+||+.||.+|
T Consensus         8 ~~Er~RR~~in~~~~~L~~llP~~~~~~~~~~k~sKa~iL~~Av~yI~~Lq~~v   61 (63)
T d1a0aa_           8 HAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG   61 (63)
T ss_dssp             GGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCcccccCCcccccHHHHHHHHHHHHHHHHHhh
Confidence            34899999999999999999994       578999999999999999999876

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.22  E-value=2.8e-12  Score=93.09  Aligned_cols=49  Identities=18%  Similarity=0.307  Sum_probs=44.5

Q ss_pred             chHHHHHHHHhhhhHHHhhhcCCCC--CCCCchhhHHHHHHHHHHHHHHHH
Q 036196          146 TAHAKAKKEKLGDRITALQQLVSPF--GKTDTASVLHEAMGYIRFLHDQVQ  194 (271)
Q Consensus       146 ~~seR~RReKI~ERi~aLQ~LVP~~--~KtDtASVLdEAI~YIKfLQ~QVq  194 (271)
                      ...||.||++|++.|..|+.|||+.  .|+|+++||..||+||++||.+|+
T Consensus        17 n~~Er~Rr~~in~~~~~L~~llP~~~~~k~sK~~iL~~Ai~YI~~Lq~~l~   67 (68)
T d1mdya_          17 TMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR   67 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence            3459999999999999999999985  579999999999999999998774

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=4.7e-12  Score=93.76  Aligned_cols=53  Identities=34%  Similarity=0.490  Sum_probs=49.1

Q ss_pred             chHHHHHHHHhhhhHHHhhhcCCCC-CCCCchhhHHHHHHHHHHHHHHHHHhcC
Q 036196          146 TAHAKAKKEKLGDRITALQQLVSPF-GKTDTASVLHEAMGYIRFLHDQVQVLCS  198 (271)
Q Consensus       146 ~~seR~RReKI~ERi~aLQ~LVP~~-~KtDtASVLdEAI~YIKfLQ~QVq~Ls~  198 (271)
                      ...||+||++|++.|..|+.|||+. .|+|+++||..||+||++|+.+++.|..
T Consensus        11 ~~~Er~RR~~in~~~~~L~~llP~~~~k~~K~~iL~~a~~yI~~L~~~~~~L~~   64 (80)
T d1am9a_          11 NAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQ   64 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4569999999999999999999986 6899999999999999999999998875

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=2.7e-11  Score=88.99  Aligned_cols=53  Identities=23%  Similarity=0.188  Sum_probs=48.2

Q ss_pred             chHHHHHHHHhhhhHHHhhhcCCCC---CCCCchhhHHHHHHHHHHHHHHHHHhcC
Q 036196          146 TAHAKAKKEKLGDRITALQQLVSPF---GKTDTASVLHEAMGYIRFLHDQVQVLCS  198 (271)
Q Consensus       146 ~~seR~RReKI~ERi~aLQ~LVP~~---~KtDtASVLdEAI~YIKfLQ~QVq~Ls~  198 (271)
                      ...||+||++|++.|..|+.+||+.   .|+++++||.+||+||+.|+.+++.|..
T Consensus         6 n~~Er~RR~~in~~f~~L~~llP~~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~   61 (79)
T d1nlwa_           6 NEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVH   61 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3459999999999999999999975   4799999999999999999999988865

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=3.8e-11  Score=88.84  Aligned_cols=53  Identities=19%  Similarity=0.404  Sum_probs=48.4

Q ss_pred             chHHHHHHHHhhhhHHHhhhcCCCC--CCCCchhhHHHHHHHHHHHHHHHHHhcC
Q 036196          146 TAHAKAKKEKLGDRITALQQLVSPF--GKTDTASVLHEAMGYIRFLHDQVQVLCS  198 (271)
Q Consensus       146 ~~seR~RReKI~ERi~aLQ~LVP~~--~KtDtASVLdEAI~YIKfLQ~QVq~Ls~  198 (271)
                      +..||.||++|++.|..|+.|||+.  .|+++++||..||+||++|+.+++.|..
T Consensus         7 n~~Er~RR~~in~~f~~L~~llP~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~   61 (83)
T d1nkpb_           7 NALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQ   61 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3459999999999999999999964  6899999999999999999999988875

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=4.6e-11  Score=89.28  Aligned_cols=53  Identities=21%  Similarity=0.317  Sum_probs=48.4

Q ss_pred             chHHHHHHHHhhhhHHHhhhcCCCC---CCCCchhhHHHHHHHHHHHHHHHHHhcC
Q 036196          146 TAHAKAKKEKLGDRITALQQLVSPF---GKTDTASVLHEAMGYIRFLHDQVQVLCS  198 (271)
Q Consensus       146 ~~seR~RReKI~ERi~aLQ~LVP~~---~KtDtASVLdEAI~YIKfLQ~QVq~Ls~  198 (271)
                      +..||+||++|++.|..|+.+||+.   .|+++++||..||+||+.|+.+++.|..
T Consensus        11 n~~Er~RR~~in~~f~~Lr~llP~~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~   66 (88)
T d1nkpa_          11 NVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLIS   66 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4569999999999999999999965   5799999999999999999999998865

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=5.2e-11  Score=85.24  Aligned_cols=49  Identities=16%  Similarity=0.346  Sum_probs=43.5

Q ss_pred             CchHHHHHHHHhhhhHHHhhhcCCCC------CCCCchhhHHHHHHHHHHHHHHH
Q 036196          145 STAHAKAKKEKLGDRITALQQLVSPF------GKTDTASVLHEAMGYIRFLHDQV  193 (271)
Q Consensus       145 s~~seR~RReKI~ERi~aLQ~LVP~~------~KtDtASVLdEAI~YIKfLQ~QV  193 (271)
                      ++..||+||++|++.|..|+.|||..      .|++++.||..||+||+.||++.
T Consensus         9 H~~~Er~RR~~in~~f~~L~~lvP~~~~~~~~~k~sK~~iL~~av~yI~~Lq~~~   63 (65)
T d1an4a_           9 HNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN   63 (65)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence            34559999999999999999999964      38999999999999999999753