Citrus Sinensis ID: 036214

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90
Protein Sequence
MRSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTGSISLSP
Secondary Structure (PSIPRED)
cccccccccccHHHHHcccccccccccccccccccccccHHHHccccccEEEccccccEEcccHHccccccccEEEccccccEEEccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHcHcccccHcccEEEcccccccccccccccccHcccccccEEEcccccccccccHHHHcccccEEEEcccccccccccccc
Coil and Loop (DISEMBL)
MRSALNTSFLQSIGESMSSLKYLslsgstiginssMILDQGLCSLVHLQELYIAsndlrgslpwclaNMTSLRILDVSynqltgsislsp
Flexible Loop (DISEMBL)
MRSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSynqltgsislsp
Low Complexity Region (SEG)
MRSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTGSISLSP
Disordered region (IsUnstruct)
*******************LKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLT*******
Disordered Region (DISOPRED)
MRSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTGSISL**
Disordered Region (DISEMBL)
********FLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTGSISLSP
Disordered Region (DISPRO)
******TSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLT*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTGSISLSP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	90	2.2.26 [Sep-21-2011]
Q42371	976	LRR receptor-like serine/	no	no	0.733	0.067	0.4	1e-05
Q6XAT2	967	LRR receptor-like serine/	no	no	0.7	0.065	0.402	1e-05
C0LGW6	966	LRR receptor-like serine/	no	no	0.7	0.065	0.388	1e-05
Q9SD62	1025	Putative receptor-like pr	no	no	0.777	0.068	0.413	4e-05
Q9LIG2	899	Receptor-like protein kin	no	no	0.555	0.055	0.44	7e-05
Q9FII5	1041	Leucine-rich repeat recep	no	no	0.733	0.063	0.385	0.0001
O65440	992	Leucine-rich repeat recep	no	no	0.5	0.045	0.479	0.0003
Q9FXF2	1021	Probable LRR receptor-lik	no	no	0.688	0.060	0.444	0.0003
C0LGP9	784	Probable leucine-rich rep	no	no	0.455	0.052	0.422	0.0004
Q9SYQ8	980	Receptor protein kinase C	no	no	0.5	0.045	0.411	0.0004

>sp|Q42371|ERECT_ARATH LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 4/70 (5%)

Query: 20  LKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSY 79
           L+YL L G+ +  N S      LC L  L    + +N L GS+P  + N T+ ++LD+SY
Sbjct: 190 LQYLGLRGNNLVGNIS----PDLCQLTGLWYFDVRNNSLTGSIPETIGNCTAFQVLDLSY 245

Query: 80  NQLTGSISLS 89
           NQLTG I   
Sbjct: 246 NQLTGEIPFD 255

Receptor kinase that, together with ERL1 and ERL2, regulates aerial architecture, including inflorescence (e.g. shoot apical meristem-originating organ shape, elongation of the internode and pedicels, and adaxial-abaxial polarity), and stomatal patterning (e.g. density and clustering), probably by tuning cell division and expansion. Modulates plant transpiration efficiency by controlling stomatal density, leaf photosynthetic capacity, epidermal cell expansion, mesophyll cell proliferation and cell-cell contact. Probable major trait regulating canalization (maintenance of phenotype despite varying environment) in many aspect of the plant physiology (e.g. plant morphology, light-dependent leaves number, branch number, flowering time, phytate and mineral concentrations) by transducing microenvironmental variation into phenotypic differentiation (ecological amplifier). May maintain development integrity in heat stress conditions. Regulates cell wall composition and structure. Confers resistance to the pathogenic bacteria Ralstonia solanacearum and to the necrotrophic fungi Plectosphaerella cucumerina and Pythium irregulare, and required for callose deposition upon infection. Resistance to P.cucumerina seems cell wall-mediated.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q6XAT2|ERL2_ARATH LRR receptor-like serine/threonine-protein kinase ERL2 OS=Arabidopsis thaliana GN=ERL2 PE=2 SV=1

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 4/67 (5%)

Query: 20  LKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSY 79
           L+YL L G+ +    +  L   +C L  L    +  N+L G++P  + N TS  ILDVSY
Sbjct: 195 LQYLGLRGNML----TGTLSPDMCQLTGLWYFDVRGNNLTGTIPESIGNCTSFEILDVSY 250

Query: 80  NQLTGSI 86
           NQ+TG I
Sbjct: 251 NQITGVI 257

Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ERL1 and ER.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGW6|ERL1_ARATH LRR receptor-like serine/threonine-protein kinase ERL1 OS=Arabidopsis thaliana GN=ERL1 PE=2 SV=1

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 4/67 (5%)

Query: 20  LKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSY 79
           L+YL L G+ +    +  L   +C L  L    +  N+L G++P  + N TS +ILD+SY
Sbjct: 193 LQYLGLRGNML----TGTLSSDMCQLTGLWYFDVRGNNLTGTIPESIGNCTSFQILDISY 248

Query: 80  NQLTGSI 86
           NQ+TG I
Sbjct: 249 NQITGEI 255

Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ER and ERL2.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SD62|Y3471_ARATH Putative receptor-like protein kinase At3g47110 OS=Arabidopsis thaliana GN=At3g47110 PE=3 SV=1

 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 5/75 (6%)

Query: 16  SMSSLKYLSLSGSTIGINSSMILDQGLCSLV-HLQELYIASNDLRGSLPWCLANMTSLRI 74
           ++SSL +LS++G++     S  L     SL+ +LQ LY+  N   G++P  L+N++SLR 
Sbjct: 247 NLSSLIFLSITGNSF----SGTLRPDFGSLLPNLQILYMGINSFTGTIPETLSNISSLRQ 302

Query: 75  LDVSYNQLTGSISLS 89
           LD+  N LTG I LS
Sbjct: 303 LDIPSNHLTGKIPLS 317

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LIG2|RLK6_ARATH Receptor-like protein kinase At3g21340 OS=Arabidopsis thaliana GN=At3g21340 PE=1 SV=1

 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 36/50 (72%)

Query: 37  ILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTGSI 86
           I+ QG+ +L HLQEL +++N+L G +P  LA++ SL ++++S N   GSI
Sbjct: 429 IIAQGIQNLTHLQELDLSNNNLTGGIPEFLADIKSLLVINLSGNNFNGSI 478

Probable receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FII5|TDR_ARATH Leucine-rich repeat receptor-like protein kinase TDR OS=Arabidopsis thaliana GN=TDR PE=1 SV=1

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 43/70 (61%), Gaps = 4/70 (5%)

Query: 17  MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILD 76
           +S+LKY  +S  ++    S  L Q L +L +L+ L++  N   G +P   +N+ SL++LD
Sbjct: 248 LSNLKYFDVSNCSL----SGSLPQELGNLSNLETLFLFQNGFTGEIPESYSNLKSLKLLD 303

Query: 77  VSYNQLTGSI 86
            S NQL+GSI
Sbjct: 304 FSSNQLSGSI 313

Acts with CLE41p and CLE44p peptides as a ligand-receptor pair in a signal transduction pathway involved in the regulation of procambium maintenance and polarity during vascular-tissue development. Mediates repression of tracheary element differentiation and the promotion of procambial cells formation and polar division adjacent to phloem cells in the veins.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O65440|BAME3_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 OS=Arabidopsis thaliana GN=BAM3 PE=2 SV=3

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 33/48 (68%)

Query: 42  LCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTGSISLS 89
           L +L +L+ L++ +N+L GS+P  L NMTSL+ LD+S N L G I L 
Sbjct: 267 LGNLKNLEVLFLQTNELTGSVPRELGNMTSLKTLDLSNNFLEGEIPLE 314

Necessary for male gametophyte development, as well as ovule specification and function. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FXF2|RKF1_ARATH Probable LRR receptor-like serine/threonine-protein kinase RFK1 OS=Arabidopsis thaliana GN=RKF1 PE=1 SV=1

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 43/72 (59%), Gaps = 10/72 (13%)

Query: 18  SSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLA---NMTSLRI 74
           SSL YL L  +      S  + Q L +LVHL++L ++SN L G+LP  LA   NMT  RI
Sbjct: 169 SSLTYLDLESNAF----SGTIPQELGNLVHLKKLLLSSNKLTGTLPASLARLQNMTDFRI 224

Query: 75  LDVSYNQLTGSI 86
            D+   QL+G+I
Sbjct: 225 NDL---QLSGTI 233

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGP9|IMK3_ARATH Probable leucine-rich repeat receptor-like protein kinase IMK3 OS=Arabidopsis thaliana GN=IMK3 PE=1 SV=1

 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 30/45 (66%)

Query: 42  LCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTGSI 86
           LC+L  LQ+   + N +RG+LP  L+ +T LR +D+S N ++G I
Sbjct: 266 LCNLTQLQDFSFSHNRIRGTLPSELSKLTKLRKMDISGNSVSGHI 310

Can phosphorylate AGL24.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SYQ8|CLV1_ARATH Receptor protein kinase CLAVATA1 OS=Arabidopsis thaliana GN=CLV1 PE=1 SV=3

 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 34/51 (66%)

Query: 38  LDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTGSISL 88
           + +G+ ++ +L  L I+ N L GS+P  + NMTSL  LD+S+N L+G + L
Sbjct: 544 IPKGINNVKNLGTLNISGNQLTGSIPTGIGNMTSLTTLDLSFNDLSGRVPL 594

Involved in the detection of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristem maintenance. Acts with CLV3 as a ligand-receptor pair in a signal transduction pathway coordinating growth between adjacent meristematic regions and controlling the balance between meristem cell proliferation and differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	90
255581263	912	serine-threonine protein kinase, plant-t	0.955	0.094	0.516	8e-15
224120450	935	predicted protein [Populus trichocarpa]	0.933	0.089	0.517	2e-13
255583082	711	serine-threonine protein kinase, plant-t	0.877	0.111	0.536	1e-12
224112233	976	leucine rich repeat family protein with	0.955	0.088	0.516	1e-12
255585991	743	serine-threonine protein kinase, plant-t	0.9	0.109	0.535	3e-12
224124626	1126	predicted protein [Populus trichocarpa]	0.922	0.073	0.494	3e-12
224142721	926	predicted protein [Populus trichocarpa]	0.944	0.091	0.511	4e-12
224144186	973	predicted protein [Populus trichocarpa]	0.944	0.087	0.5	1e-10
224120284	929	predicted protein [Populus trichocarpa]	0.944	0.091	0.477	1e-10
224134597	947	predicted protein [Populus trichocarpa]	0.811	0.077	0.493	3e-10

>gi|255581263|ref|XP_002531443.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223528936|gb|EEF30930.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score = 84.3 bits (207), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 46/89 (51%), Positives = 63/89 (70%), Gaps = 3/89 (3%)

Query: 2   RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGS 61
           +  L  SFLQ++G  M+SLK LSLSG   G+  ++   QGLC L+HL+ L ++SN+  G 
Sbjct: 186 KIELENSFLQTVG-VMTSLKVLSLSGC--GLTGALPNVQGLCELIHLRVLDVSSNEFHGI 242

Query: 62  LPWCLANMTSLRILDVSYNQLTGSISLSP 90
           LPWCL+N+TSL++LD+S NQ  G IS SP
Sbjct: 243 LPWCLSNLTSLQLLDLSSNQFVGDISNSP 271

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120450|ref|XP_002331051.1| predicted protein [Populus trichocarpa] gi|222872981|gb|EEF10112.1| predicted protein [Populus trichocarpa]

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/87 (51%), Positives = 60/87 (68%), Gaps = 3/87 (3%)

Query: 3   SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSL 62
           S ++ SFLQ++G+ +++LK L L G  +  N S+   QGLC L HLQ L I+ NDL G+L
Sbjct: 343 STVDNSFLQTVGK-ITTLKSLRLRGCRL--NGSIPKAQGLCQLKHLQNLDISGNDLSGAL 399

Query: 63  PWCLANMTSLRILDVSYNQLTGSISLS 89
           P CLAN+TSL+ LD+SYN   G IS S
Sbjct: 400 PRCLANLTSLQGLDLSYNNFIGDISFS 426

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255583082|ref|XP_002532308.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223527977|gb|EEF30060.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/82 (53%), Positives = 58/82 (70%), Gaps = 3/82 (3%)

Query: 3   SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSL 62
           S LN SFLQSIG +++SLK LSL+    G+  ++   QGLC L HL++L I+ N L G+L
Sbjct: 294 STLNNSFLQSIG-TLTSLKTLSLT--QCGLTGTIPSTQGLCELKHLKDLDISFNSLSGNL 350

Query: 63  PWCLANMTSLRILDVSYNQLTG 84
           PWCLAN+TSL+ LD+S N   G
Sbjct: 351 PWCLANLTSLQRLDISSNSFNG 372

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112233|ref|XP_002332812.1| leucine rich repeat family protein with ABC domain [Populus trichocarpa] gi|222833206|gb|EEE71683.1| leucine rich repeat family protein with ABC domain [Populus trichocarpa]

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/89 (51%), Positives = 59/89 (66%), Gaps = 3/89 (3%)

Query: 2   RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGS 61
            +ALN S  Q+IG +M+SLK L L G ++  N  +   QGLC L HLQEL ++ NDL G 
Sbjct: 350 NTALNNSIFQAIG-TMTSLKTLILEGCSL--NGQIPTTQGLCDLNHLQELDVSDNDLSGV 406

Query: 62  LPWCLANMTSLRILDVSYNQLTGSISLSP 90
           LP CL N+TSL+ L +SYN L   +SLSP
Sbjct: 407 LPSCLPNLTSLQQLSLSYNHLKIPMSLSP 435

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585991|ref|XP_002533665.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223526433|gb|EEF28711.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/84 (53%), Positives = 59/84 (70%), Gaps = 3/84 (3%)

Query: 3   SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSL 62
           S LN SFLQSIG +++SLK LSLS    G+  ++   QGLC L HL+ L I+ N L G+L
Sbjct: 204 STLNNSFLQSIG-TLTSLKALSLS--KCGLTGTIPSTQGLCELKHLECLDISFNSLSGNL 260

Query: 63  PWCLANMTSLRILDVSYNQLTGSI 86
           PWCLAN+TSL+ L +S+N   G+I
Sbjct: 261 PWCLANLTSLQQLVLSWNHFNGNI 284

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124626|ref|XP_002330070.1| predicted protein [Populus trichocarpa] gi|222871495|gb|EEF08626.1| predicted protein [Populus trichocarpa]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/87 (49%), Positives = 65/87 (74%), Gaps = 4/87 (4%)

Query: 3   SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSL 62
           S+L  SFL++IG  +S+LK LSL+G  +  NS++   QG C L +L+ELY++ N+L+G L
Sbjct: 417 SSLPASFLRNIGP-LSTLKVLSLAG--VDFNSTLPA-QGWCELKNLEELYLSGNNLKGVL 472

Query: 63  PWCLANMTSLRILDVSYNQLTGSISLS 89
           P CL N++ L+ILD+S+NQL G+I+ S
Sbjct: 473 PPCLGNLSFLQILDLSHNQLEGNIAFS 499

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142721|ref|XP_002324703.1| predicted protein [Populus trichocarpa] gi|222866137|gb|EEF03268.1| predicted protein [Populus trichocarpa]

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/88 (51%), Positives = 58/88 (65%), Gaps = 3/88 (3%)

Query: 3   SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSL 62
           + L+ + LQ+IG +M+SLK LSLS   + I   +   QGLC L HLQ LY+  NDL G L
Sbjct: 307 NTLDNNILQTIG-TMTSLKTLSLSSCKLNI--QIPTTQGLCDLNHLQVLYMYDNDLSGFL 363

Query: 63  PWCLANMTSLRILDVSYNQLTGSISLSP 90
           P CLAN+TSL+ LD+SYN     +SL P
Sbjct: 364 PPCLANLTSLQRLDLSYNHFKIPMSLRP 391

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144186|ref|XP_002336117.1| predicted protein [Populus trichocarpa] gi|222873047|gb|EEF10178.1| predicted protein [Populus trichocarpa]

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/88 (50%), Positives = 58/88 (65%), Gaps = 3/88 (3%)

Query: 3   SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSL 62
           + L+ + LQSI  +M+SLK L L   +  +N  +   QGLC L HLQELY++ NDL G L
Sbjct: 356 NTLDNNILQSI-RAMTSLKTLGLQ--SCRLNGRIPTTQGLCDLNHLQELYMSDNDLSGFL 412

Query: 63  PWCLANMTSLRILDVSYNQLTGSISLSP 90
           P CLAN+TSL+ L +S N L   +SLSP
Sbjct: 413 PLCLANLTSLQQLSLSSNHLKIPMSLSP 440

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120284|ref|XP_002331010.1| predicted protein [Populus trichocarpa] gi|222872940|gb|EEF10071.1| predicted protein [Populus trichocarpa]

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/88 (47%), Positives = 58/88 (65%), Gaps = 3/88 (3%)

Query: 3   SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSL 62
           S L+ SFLQ+IG  +++L  L L+G  +    S+ + +GLC L HLQ L I++N L G L
Sbjct: 296 STLDNSFLQTIGR-ITTLTSLKLNGCRLS--GSIPIAEGLCELKHLQSLDISNNSLTGVL 352

Query: 63  PWCLANMTSLRILDVSYNQLTGSISLSP 90
           P CLAN+TSL+ +D+S N   G IS SP
Sbjct: 353 PKCLANLTSLKQIDLSSNHFGGDISSSP 380

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134597|ref|XP_002327443.1| predicted protein [Populus trichocarpa] gi|222835997|gb|EEE74418.1| predicted protein [Populus trichocarpa]

 Score = 68.9 bits (167), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/75 (49%), Positives = 54/75 (72%), Gaps = 2/75 (2%)

Query: 16  SMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRIL 75
           ++ +L++L LS +T+  ++S+    GLC L HLQ+LY+  NDL G LP CLAN+TSL+ L
Sbjct: 344 NLKNLEHLDLSSNTL--DNSIFQTIGLCDLNHLQQLYMYDNDLSGFLPPCLANLTSLQQL 401

Query: 76  DVSYNQLTGSISLSP 90
           D+S+N L   +SLSP
Sbjct: 402 DLSFNHLKIPMSLSP 416

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	90
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.966	0.090	0.363	1.1e-07
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.777	0.064	0.424	2.6e-07
TAIR|locus:2017527	693	AT1G51830 [Arabidopsis thalian	0.722	0.093	0.417	3.1e-07
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.744	0.073	0.457	7.3e-07
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.755	0.076	0.366	1.5e-06
TAIR|locus:2046585	808	RLP27 "receptor like protein 2	0.733	0.081	0.391	1.7e-06
TAIR|locus:2005507	976	ER "ERECTA" [Arabidopsis thali	0.7	0.064	0.417	3.5e-06
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.511	0.046	0.456	3.6e-06
TAIR|locus:2167948	966	ERL1 "ERECTA-like 1" [Arabidop	0.7	0.065	0.388	4.4e-06
TAIR|locus:2075661	1025	AT3G47110 [Arabidopsis thalian	0.788	0.069	0.405	4.7e-06

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 36/99 (36%), Positives = 56/99 (56%)

Query:     2 RSALNTSF-LQSIGESMSSLKYLSLSGS----TIGINSSMILD------QGLCSLVHLQE 50
             R+  N S  +Q +  S+  LK L LSG+    ++ +      D       G+C L ++QE
Sbjct:   190 RNRFNGSIPIQELS-SLRKLKALDLSGNEFSGSMELQGKFCTDLLFSIQSGICELNNMQE 248

Query:    51 LYIASNDLRGSLPWCLANMTSLRILDVSYNQLTGSISLS 89
             L ++ N L G LP CL ++T LR+LD+S N+LTG++  S
Sbjct:   249 LDLSQNKLVGHLPSCLTSLTGLRVLDLSSNKLTGTVPSS 287

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 2.6e-07, P = 2.6e-07
 Identities = 31/73 (42%), Positives = 46/73 (63%)

Query:    15 ESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRI 74
             E  +SL+ L    + + +     L  G+C L+ L+EL ++SN L  SLP+CL N+T LR 
Sbjct:   329 EIPTSLQVLDFKRNQLSLTHEGYL--GICRLMKLRELDLSSNALT-SLPYCLGNLTHLRT 385

Query:    75 LDVSYNQLTGSIS 87
             LD+S NQL G++S
Sbjct:   386 LDLSNNQLNGNLS 398

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2017527 AT1G51830 [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 3.1e-07, P = 3.1e-07
 Identities = 28/67 (41%), Positives = 46/67 (68%)

Query:    23 LSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQL 82
             +SL  S+ G+N   ++ QG+ +L HLQ L ++ N+L G +P  LA++ SL ++++S N L
Sbjct:   216 ISLDLSSSGLNG--VITQGIQNLTHLQYLDLSDNNLTGDIPKFLADIQSLLVINLSGNNL 273

Query:    83 TGSISLS 89
             TGS+ LS
Sbjct:   274 TGSVPLS 280

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 7.3e-07, P = 7.3e-07
 Identities = 32/70 (45%), Positives = 41/70 (58%)

Query:    17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILD 76
             +  LK L LS +  GI SSM   Q  C + +LQEL +   +  G LP C  N+  LR LD
Sbjct:   194 LKKLKALDLSSN--GIYSSMEW-QVFCEMKNLQELDLRGINFVGQLPLCFGNLNKLRFLD 250

Query:    77 VSYNQLTGSI 86
             +S NQLTG+I
Sbjct:   251 LSSNQLTGNI 260

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 1.5e-06, P = 1.5e-06
 Identities = 26/71 (36%), Positives = 41/71 (57%)

Query:    16 SMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRIL 75
             ++ +L+ L LS +     S  +  QG+C L  LQEL ++ N   G +P C +  + LR+L
Sbjct:   151 NLRNLRALDLSNNKF---SGSLQKQGICRLEQLQELRLSRNRFEGEIPLCFSRFSKLRVL 207

Query:    76 DVSYNQLTGSI 86
             D+S N L+G I
Sbjct:   208 DLSSNHLSGKI 218

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2046585 RLP27 "receptor like protein 27" [Arabidopsis thaliana (taxid:3702)]

 Score = 122 (48.0 bits), Expect = 1.7e-06, P = 1.7e-06
 Identities = 27/69 (39%), Positives = 43/69 (62%)

Query:    17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILD 76
             +  L+YL+LS +     +S  L  G  +L  L+ LY++SN   G +P   +N++ L ILD
Sbjct:    96 LQHLRYLNLSNNNF---TSASLPSGFGNLNRLEVLYLSSNGFLGQVPSSFSNLSQLNILD 152

Query:    77 VSYNQLTGS 85
             +S+N+LTGS
Sbjct:   153 LSHNELTGS 161

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2005507 ER "ERECTA" [Arabidopsis thaliana (taxid:3702)]

 Score = 120 (47.3 bits), Expect = 3.5e-06, P = 3.5e-06
 Identities = 28/67 (41%), Positives = 39/67 (58%)

Query:    20 LKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSY 79
             L+YL L G+ +  N S      LC L  L    + +N L GS+P  + N T+ ++LD+SY
Sbjct:   190 LQYLGLRGNNLVGNIS----PDLCQLTGLWYFDVRNNSLTGSIPETIGNCTAFQVLDLSY 245

Query:    80 NQLTGSI 86
             NQLTG I
Sbjct:   246 NQLTGEI 252

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0048281 "inflorescence morphogenesis" evidence=IMP

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IMP

GO:0010103 "stomatal complex morphogenesis" evidence=RCA;IMP

GO:0001558 "regulation of cell growth" evidence=IGI;IMP

GO:0009965 "leaf morphogenesis" evidence=RCA;IMP

GO:0010148 "transpiration" evidence=IMP

GO:0030155 "regulation of cell adhesion" evidence=IMP

GO:0051302 "regulation of cell division" evidence=IGI;IMP

GO:0009664 "plant-type cell wall organization" evidence=IMP

GO:0008356 "asymmetric cell division" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0031540 "regulation of anthocyanin biosynthetic process" evidence=RCA

GO:0019199 "transmembrane receptor protein kinase activity" evidence=ISS

GO:2000027 "regulation of organ morphogenesis" evidence=IMP

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 120 (47.3 bits), Expect = 3.6e-06, P = 3.6e-06
 Identities = 21/46 (45%), Positives = 33/46 (71%)

Query:    41 GLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTGSI 86
             G C   +++EL +++N L G  P CL ++T LR+LD+S NQLTG++
Sbjct:   253 GTCPWKNMEELKLSNNKLAGQFPLCLTSLTGLRVLDLSSNQLTGNV 298

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2167948 ERL1 "ERECTA-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 4.4e-06, P = 4.4e-06
 Identities = 26/67 (38%), Positives = 39/67 (58%)

Query:    20 LKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSY 79
             L+YL L G+ +    +  L   +C L  L    +  N+L G++P  + N TS +ILD+SY
Sbjct:   193 LQYLGLRGNML----TGTLSSDMCQLTGLWYFDVRGNNLTGTIPESIGNCTSFQILDISY 248

Query:    80 NQLTGSI 86
             NQ+TG I
Sbjct:   249 NQITGEI 255

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010103 "stomatal complex morphogenesis" evidence=IGI;RCA

GO:0009553 "embryo sac development" evidence=IGI

GO:0048481 "ovule development" evidence=IGI;RCA

GO:0016020 "membrane" evidence=IDA

GO:0001708 "cell fate specification" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0048441 "petal development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

TAIR|locus:2075661 AT3G47110 [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 4.7e-06, P = 4.7e-06
 Identities = 30/74 (40%), Positives = 48/74 (64%)

Query:    16 SMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRIL 75
             ++SSL +LS++G++   + ++  D G   L +LQ LY+  N   G++P  L+N++SLR L
Sbjct:   247 NLSSLIFLSITGNSF--SGTLRPDFGSL-LPNLQILYMGINSFTGTIPETLSNISSLRQL 303

Query:    76 DVSYNQLTGSISLS 89
             D+  N LTG I LS
Sbjct:   304 DIPSNHLTGKIPLS 317

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00181071 annotation not avaliable (645 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	90
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.002
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.002

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 49.4 bits (118), Expect = 2e-08
 Identities = 21/45 (46%), Positives = 31/45 (68%)

Query: 45  LVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTGSISLS 89
           L HLQ + ++ N +RG++P  L ++TSL +LD+SYN   GSI  S
Sbjct: 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES 485

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 37.1 bits (86), Expect = 4e-04
 Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 11/79 (13%)

Query: 13  IGESMSSLKYL---SLSGSTI--GINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLA 67
           I   +S L++L   +LSG++I   I  S      L S+  L+ L ++ N   GS+P  L 
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPS------LGSITSLEVLDLSYNSFNGSIPESLG 487

Query: 68  NMTSLRILDVSYNQLTGSI 86
            +TSLRIL+++ N L+G +
Sbjct: 488 QLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 36.4 bits (84), Expect = 7e-04
 Identities = 20/46 (43%), Positives = 25/46 (54%)

Query: 41  GLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTGSI 86
            L SL  LQ L + SN   G +P  L    +L +LD+S N LTG I
Sbjct: 327 ALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEI 372

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 35.2 bits (81), Expect = 0.002
 Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 5/76 (6%)

Query: 11  QSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMT 70
             IG S SSLK L L G+ +       +   L +L  L+ L +ASN L G +P  L  M 
Sbjct: 158 NDIG-SFSSLKVLDLGGNVL----VGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMK 212

Query: 71  SLRILDVSYNQLTGSI 86
           SL+ + + YN L+G I
Sbjct: 213 SLKWIYLGYNNLSGEI 228

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 34.8 bits (80), Expect = 0.002
 Identities = 18/42 (42%), Positives = 27/42 (64%)

Query: 48  LQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTGSISLS 89
           L+ +Y+  N+L G +P+ +  +TSL  LD+ YN LTG I  S
Sbjct: 214 LKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS 255

Length = 968

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	90
PLN03150	623	hypothetical protein; Provisional	99.46
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.28
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.25
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.23
PLN03150	623	hypothetical protein; Provisional	98.91
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.73
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.58
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.57
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.56
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.52
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.41
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.39
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.3
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.24
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.18
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.15
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.11
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.1
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.06
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.02
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	97.95
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.89
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	97.85
KOG4237	498	consensus Extracellular matrix protein slit, conta	97.85
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.83
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.79
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	97.77
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.71
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.68
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.6
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.56
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.52
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	97.5
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	97.36
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.26
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.12
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.12
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.02
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	96.96
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	96.93
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.93
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.9
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	96.78
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	96.73
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	96.69
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.66
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	96.6
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	96.52
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	96.48
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	95.98
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.89
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	95.82
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	95.68
KOG2982	418	consensus Uncharacterized conserved protein [Funct	95.61
KOG2982	418	consensus Uncharacterized conserved protein [Funct	95.14
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	94.95
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	94.89
smart00370	26	LRR Leucine-rich repeats, outliers.	93.73
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.73
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	92.64
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	92.33
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	90.45
KOG2123	388	consensus Uncharacterized conserved protein [Funct	89.83
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	89.41
PRK15386	426	type III secretion protein GogB; Provisional	89.17
KOG3864	221	consensus Uncharacterized conserved protein [Funct	88.02
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	87.56
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	87.0
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	85.72
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	84.08
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	83.37

>PLN03150 hypothetical protein; Provisional

Probab=99.46  E-value=2.3e-13  Score=91.81  Aligned_cols=82  Identities=30%  Similarity=0.494  Sum_probs=76.8

Q ss_pred             CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214            2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ   81 (90)
Q Consensus         2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~   81 (90)
                      +|.+.|.+|+.+.. +++|+.|++++|.  +.+.+ |. .+..++.|+.|+++.|.+++.+|..+..+++|+.|++++|.
T Consensus       427 ~n~L~g~ip~~i~~-L~~L~~L~Ls~N~--l~g~i-P~-~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~  501 (623)
T PLN03150        427 NQGLRGFIPNDISK-LRHLQSINLSGNS--IRGNI-PP-SLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS  501 (623)
T ss_pred             CCCccccCCHHHhC-CCCCCEEECCCCc--ccCcC-Ch-HHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCc
Confidence            46778899999998 9999999999999  88887 88 89999999999999999999999999999999999999999


Q ss_pred             CcccCCC
Q 036214           82 LTGSISL   88 (90)
Q Consensus        82 l~~~~p~   88 (90)
                      +.|.+|.
T Consensus       502 l~g~iP~  508 (623)
T PLN03150        502 LSGRVPA  508 (623)
T ss_pred             ccccCCh
Confidence            9999986

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.28  E-value=8.9e-12  Score=87.17  Aligned_cols=82  Identities=24%  Similarity=0.381  Sum_probs=53.8

Q ss_pred             CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214            2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ   81 (90)
Q Consensus         2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~   81 (90)
                      +|.+.+.+|+.+.. +++|++|++++|.  +.+.+ |. .+..++.|+.+++++|++.+.+|..+..+.+|+.+++++|+
T Consensus       508 ~N~l~~~~p~~~~~-l~~L~~L~Ls~N~--l~~~~-p~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~  582 (968)
T PLN00113        508 ENKLSGEIPDELSS-CKKLVSLDLSHNQ--LSGQI-PA-SFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNH  582 (968)
T ss_pred             CCcceeeCChHHcC-ccCCCEEECCCCc--ccccC-Ch-hHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCc
Confidence            35555666666665 6666666666666  66555 55 56666666677777776666666666666667777777777


Q ss_pred             CcccCCC
Q 036214           82 LTGSISL   88 (90)
Q Consensus        82 l~~~~p~   88 (90)
                      +.+.+|.
T Consensus       583 l~~~~p~  589 (968)
T PLN00113        583 LHGSLPS  589 (968)
T ss_pred             ceeeCCC
Confidence            7666664

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.25  E-value=1.6e-11  Score=85.90  Aligned_cols=82  Identities=32%  Similarity=0.477  Sum_probs=74.7

Q ss_pred             CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214            2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ   81 (90)
Q Consensus         2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~   81 (90)
                      +|.+.+.+|..+.. ++.|+.|++++|.  +.+.+ |. .+..+++|+.+++++|.+++.+|..+..+++|+.|++++|+
T Consensus       484 ~n~l~~~~~~~~~~-l~~L~~L~Ls~N~--l~~~~-p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  558 (968)
T PLN00113        484 RNQFSGAVPRKLGS-LSELMQLKLSENK--LSGEI-PD-ELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQ  558 (968)
T ss_pred             CCccCCccChhhhh-hhccCEEECcCCc--ceeeC-Ch-HHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCc
Confidence            57788888888888 9999999999999  88877 87 88899999999999999999999999999999999999999


Q ss_pred             CcccCCC
Q 036214           82 LTGSISL   88 (90)
Q Consensus        82 l~~~~p~   88 (90)
                      +.+.+|.
T Consensus       559 l~~~~p~  565 (968)
T PLN00113        559 LSGEIPK  565 (968)
T ss_pred             ccccCCh
Confidence            9998885

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.23  E-value=2.1e-11  Score=59.56  Aligned_cols=61  Identities=31%  Similarity=0.462  Sum_probs=53.3

Q ss_pred             CCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcC
Q 036214           18 SSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQL   82 (90)
Q Consensus        18 ~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l   82 (90)
                      ++|++|++++|.  +.... +. .|..+++|+++++++|.++...+..|..+++|+.+++++|++
T Consensus         1 p~L~~L~l~~n~--l~~i~-~~-~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNK--LTEIP-PD-SFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSST--ESEEC-TT-TTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCC--CCccC-HH-HHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            478999999999  77653 45 789999999999999999966667899999999999999975

...

>PLN03150 hypothetical protein; Provisional

Probab=98.91  E-value=5.3e-09  Score=71.03  Aligned_cols=77  Identities=25%  Similarity=0.336  Sum_probs=67.6

Q ss_pred             CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcC-CCccEEeccCC
Q 036214            2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANM-TSLRILDVSYN   80 (90)
Q Consensus         2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l-~~L~~l~l~~n   80 (90)
                      .|.+.|.+|+.+.. ++.|+.|++++|.  +.+.+ |. .+..+++|+.|++++|.+++.+|..+..+ .++..+++.+|
T Consensus       451 ~N~l~g~iP~~~~~-l~~L~~LdLs~N~--lsg~i-P~-~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N  525 (623)
T PLN03150        451 GNSIRGNIPPSLGS-ITSLEVLDLSYNS--FNGSI-PE-SLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN  525 (623)
T ss_pred             CCcccCcCChHHhC-CCCCCEEECCCCC--CCCCC-ch-HHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCC
Confidence            57889999999998 9999999999999  89887 88 89999999999999999999999988764 45678888887


Q ss_pred             cCc
Q 036214           81 QLT   83 (90)
Q Consensus        81 ~l~   83 (90)
                      ...
T Consensus       526 ~~l  528 (623)
T PLN03150        526 AGL  528 (623)
T ss_pred             ccc
Confidence            633

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.73  E-value=1.6e-09  Score=63.44  Aligned_cols=75  Identities=29%  Similarity=0.462  Sum_probs=64.0

Q ss_pred             CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214            2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ   81 (90)
Q Consensus         2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~   81 (90)
                      .|+++ .+|+.+.. +.+|+.|.+..|+  +...  |. .+..++.|+.++++.|++. ..|..|+.++.|+.+++.+|+
T Consensus        42 HNKl~-~vppnia~-l~nlevln~~nnq--ie~l--p~-~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynn  113 (264)
T KOG0617|consen   42 HNKLT-VVPPNIAE-LKNLEVLNLSNNQ--IEEL--PT-SISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNN  113 (264)
T ss_pred             cCcee-ecCCcHHH-hhhhhhhhcccch--hhhc--Ch-hhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccc
Confidence            34454 56788888 9999999999999  7653  77 7889999999999999998 889999999999999999988


Q ss_pred             Ccc
Q 036214           82 LTG   84 (90)
Q Consensus        82 l~~   84 (90)
                      +..
T Consensus       114 l~e  116 (264)
T KOG0617|consen  114 LNE  116 (264)
T ss_pred             ccc
Confidence            765

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.58  E-value=6.3e-09  Score=69.99  Aligned_cols=79  Identities=25%  Similarity=0.280  Sum_probs=46.0

Q ss_pred             CcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcC
Q 036214            3 SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQL   82 (90)
Q Consensus         3 n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l   82 (90)
                      |.+....++.|.- .+.|++|+++.|.  ++... +. .|.-+..|+.|.++.|++.......|..+++|+.|+++.|.+
T Consensus       303 NaI~rih~d~Wsf-tqkL~~LdLs~N~--i~~l~-~~-sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~l  377 (873)
T KOG4194|consen  303 NAIQRIHIDSWSF-TQKLKELDLSSNR--ITRLD-EG-SFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNEL  377 (873)
T ss_pred             hhhheeecchhhh-cccceeEeccccc--cccCC-hh-HHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeE
Confidence            4444455555554 5566666666666  55443 44 555555666666666666533334556666777777777776


Q ss_pred             cccC
Q 036214           83 TGSI   86 (90)
Q Consensus        83 ~~~~   86 (90)
                      ++.|
T Consensus       378 s~~I  381 (873)
T KOG4194|consen  378 SWCI  381 (873)
T ss_pred             EEEE
Confidence            6654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.57  E-value=1.7e-07  Score=42.84  Aligned_cols=36  Identities=33%  Similarity=0.566  Sum_probs=20.2

Q ss_pred             cccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCc
Q 036214           47 HLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLT   83 (90)
Q Consensus        47 ~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~   83 (90)
                      +|+.+++++|+++ .+|..+.+|++|+.+++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4555666666666 45555566666666666666655

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.56  E-value=8.1e-08  Score=46.69  Aligned_cols=52  Identities=25%  Similarity=0.335  Sum_probs=41.1

Q ss_pred             CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcC
Q 036214            2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDL   58 (90)
Q Consensus         2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~   58 (90)
                      +|++....+..|.. +++|++|++++|.  +.... +. .|..+++|+.+++++|++
T Consensus        10 ~n~l~~i~~~~f~~-l~~L~~L~l~~N~--l~~i~-~~-~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen   10 NNKLTEIPPDSFSN-LPNLETLDLSNNN--LTSIP-PD-AFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             SSTESEECTTTTTT-GTTESEEEETSSS--ESEEE-TT-TTTTSTTESEEEETSSSB
T ss_pred             CCCCCccCHHHHcC-CCCCCEeEccCCc--cCccC-HH-HHcCCCCCCEEeCcCCcC
Confidence            45566444445556 9999999999999  77654 55 899999999999999975

...

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.52  E-value=1.3e-07  Score=61.41  Aligned_cols=78  Identities=31%  Similarity=0.414  Sum_probs=60.8

Q ss_pred             CCcCCccchhHHHhhCCCCcEEeccCCcc---------------------ccccccchhhhhcCcccccEEEccCCcCCC
Q 036214            2 RSALNTSFLQSIGESMSSLKYLSLSGSTI---------------------GINSSMILDQGLCSLVHLQELYIASNDLRG   60 (90)
Q Consensus         2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~---------------------~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~   60 (90)
                      .|++.-.+|.+++. +..|+.++++.|+-                     ++.... +. .+..+.+|..+|+..|.+. 
T Consensus       443 ~NN~Ln~LP~e~~~-lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd-~~-~l~nm~nL~tLDL~nNdlq-  518 (565)
T KOG0472|consen  443 SNNLLNDLPEEMGS-LVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVD-PS-GLKNMRNLTTLDLQNNDLQ-  518 (565)
T ss_pred             ccchhhhcchhhhh-hhhhheecccccccccchHHHhhHHHHHHHHhccccccccC-hH-HhhhhhhcceeccCCCchh-
Confidence            46676778888887 77788888776640                     022222 33 5777888999999999999 


Q ss_pred             cchhhhhcCCCccEEeccCCcCc
Q 036214           61 SLPWCLANMTSLRILDVSYNQLT   83 (90)
Q Consensus        61 ~~p~~~~~l~~L~~l~l~~n~l~   83 (90)
                      .+|..+++|.+|+++.+.+|+|.
T Consensus       519 ~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  519 QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             hCChhhccccceeEEEecCCccC
Confidence            88999999999999999999987

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.41  E-value=9.5e-08  Score=64.52  Aligned_cols=64  Identities=20%  Similarity=0.225  Sum_probs=40.6

Q ss_pred             CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcc
Q 036214           17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTG   84 (90)
Q Consensus        17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~   84 (90)
                      +..++.|+++.|+  +...- -. ++..++.|+.|++++|.+....+..+...++|++|++++|+++.
T Consensus       268 l~kme~l~L~~N~--l~~vn-~g-~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~  331 (873)
T KOG4194|consen  268 LEKMEHLNLETNR--LQAVN-EG-WLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITR  331 (873)
T ss_pred             ecccceeecccch--hhhhh-cc-cccccchhhhhccchhhhheeecchhhhcccceeEecccccccc
Confidence            6666677777666  44432 33 56666666667777776665556666666667777777666654

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.39  E-value=5.6e-07  Score=52.60  Aligned_cols=61  Identities=30%  Similarity=0.435  Sum_probs=19.2

Q ss_pred             CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhh-hcCCCccEEeccCCcCcc
Q 036214           17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCL-ANMTSLRILDVSYNQLTG   84 (90)
Q Consensus        17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~-~~l~~L~~l~l~~n~l~~   84 (90)
                      +.+++.|++++|.  +...   . .+..++.|+.++++.|+++ .+...+ ..+++|+.|++++|++..
T Consensus        41 l~~L~~L~Ls~N~--I~~l---~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~  102 (175)
T PF14580_consen   41 LDKLEVLDLSNNQ--ITKL---E-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISD  102 (175)
T ss_dssp             -TT--EEE-TTS----S-----T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---S
T ss_pred             hcCCCEEECCCCC--Cccc---c-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCC
Confidence            4556666666666  5442   2 4555666666666666666 333323 345666666666666543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.30  E-value=4.7e-08  Score=57.34  Aligned_cols=70  Identities=26%  Similarity=0.459  Sum_probs=35.8

Q ss_pred             chhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCc
Q 036214            9 FLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLT   83 (90)
Q Consensus         9 ~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~   83 (90)
                      +|..|+. ++.|++||+.+|.  +.....|. .|..+..|+-+++++|.+. .+|.-++++++|+.+.+.+|.+-
T Consensus        94 lprgfgs-~p~levldltynn--l~e~~lpg-nff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll  163 (264)
T KOG0617|consen   94 LPRGFGS-FPALEVLDLTYNN--LNENSLPG-NFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL  163 (264)
T ss_pred             CccccCC-Cchhhhhhccccc--cccccCCc-chhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh
Confidence            4555555 5556666665555  43332133 4444444444555555554 44555555555666555555543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.24  E-value=3.8e-06  Score=38.37  Aligned_cols=40  Identities=25%  Similarity=0.420  Sum_probs=32.2

Q ss_pred             CCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcch
Q 036214           18 SSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLP   63 (90)
Q Consensus        18 ~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p   63 (90)
                      ++|++|++++|.  ++. + +. .+..+++|+.+++++|+++ .++
T Consensus         1 ~~L~~L~l~~N~--i~~-l-~~-~l~~l~~L~~L~l~~N~i~-~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQ--ITD-L-PP-ELSNLPNLETLNLSNNPIS-DIS   40 (44)
T ss_dssp             TT-SEEEETSSS---SS-H-GG-HGTTCTTSSEEEETSSCCS-BEG
T ss_pred             CcceEEEccCCC--Ccc-c-Cc-hHhCCCCCCEEEecCCCCC-CCc
Confidence            468999999999  775 3 55 6999999999999999998 554

...

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.18  E-value=4.4e-06  Score=48.87  Aligned_cols=68  Identities=31%  Similarity=0.420  Sum_probs=32.0

Q ss_pred             HHHhhCCCCcEEeccCCccccccccchhhhh-cCcccccEEEccCCcCCCcc-hhhhhcCCCccEEeccCCcCccc
Q 036214           12 SIGESMSSLKYLSLSGSTIGINSSMILDQGL-CSLVHLQELYIASNDLRGSL-PWCLANMTSLRILDVSYNQLTGS   85 (90)
Q Consensus        12 ~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~-~~l~~l~~l~l~~n~~~~~~-p~~~~~l~~L~~l~l~~n~l~~~   85 (90)
                      .+.. ++.|+.|++++|.  ++..  .. .+ ..+++|+.+++++|++...- -..+..+++|+.|++.+|+++..
T Consensus        59 ~l~~-L~~L~~L~L~~N~--I~~i--~~-~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~  128 (175)
T PF14580_consen   59 GLPG-LPRLKTLDLSNNR--ISSI--SE-GLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK  128 (175)
T ss_dssp             T-----TT--EEE--SS-----S---CH-HHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS
T ss_pred             CccC-hhhhhhcccCCCC--CCcc--cc-chHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch
Confidence            4666 8899999999999  7654  22 33 35789999999999987311 14567889999999999998753

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.15  E-value=1.1e-06  Score=56.94  Aligned_cols=75  Identities=23%  Similarity=0.260  Sum_probs=60.3

Q ss_pred             cchhH-HHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcccC
Q 036214            8 SFLQS-IGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTGSI   86 (90)
Q Consensus         8 ~~p~~-~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~~~   86 (90)
                      ..|.. |.. +++|+++++++|+  +++.. .. +|.....++.+.+..|++.......|.++..|+.|++.+|+++-..
T Consensus       264 ~cP~~cf~~-L~~L~~lnlsnN~--i~~i~-~~-aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~  338 (498)
T KOG4237|consen  264 ICPAKCFKK-LPNLRKLNLSNNK--ITRIE-DG-AFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVA  338 (498)
T ss_pred             cChHHHHhh-cccceEeccCCCc--cchhh-hh-hhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEe
Confidence            34433 555 9999999999999  77754 55 8999999999999999998555567889999999999999987654


Q ss_pred             C
Q 036214           87 S   87 (90)
Q Consensus        87 p   87 (90)
                      |
T Consensus       339 ~  339 (498)
T KOG4237|consen  339 P  339 (498)
T ss_pred             c
Confidence            4

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.11  E-value=2.2e-06  Score=60.60  Aligned_cols=72  Identities=25%  Similarity=0.319  Sum_probs=60.0

Q ss_pred             cchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcc
Q 036214            8 SFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTG   84 (90)
Q Consensus         8 ~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~   84 (90)
                      .++.+|+..++.|++||+++|.  --+.. |. .++.+.+|++|++++..+. .+|..+.++..|.+|++..+.-..
T Consensus       561 ~is~~ff~~m~~LrVLDLs~~~--~l~~L-P~-~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~  632 (889)
T KOG4658|consen  561 EISGEFFRSLPLLRVLDLSGNS--SLSKL-PS-SIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLE  632 (889)
T ss_pred             hcCHHHHhhCcceEEEECCCCC--ccCcC-Ch-HHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccc
Confidence            3445545559999999999988  55566 87 8999999999999999999 999999999999999998765433

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.10  E-value=1.3e-06  Score=56.94  Aligned_cols=66  Identities=27%  Similarity=0.273  Sum_probs=34.1

Q ss_pred             HHHhhCCCCcEEeccCCccccccccchhhh-hcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcc
Q 036214           12 SIGESMSSLKYLSLSGSTIGINSSMILDQG-LCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTG   84 (90)
Q Consensus        12 ~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~-~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~   84 (90)
                      +|.+ +..|.++++..|+  +...  |. + ...+.++..+|+.+|+++ ++|..+..+.+|.++|+++|.+++
T Consensus       223 ef~g-cs~L~Elh~g~N~--i~~l--pa-e~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~  289 (565)
T KOG0472|consen  223 EFPG-CSLLKELHVGENQ--IEML--PA-EHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISS  289 (565)
T ss_pred             CCCc-cHHHHHHHhcccH--HHhh--HH-HHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCcccc
Confidence            4444 5555555555555  3322  33 2 234555555555555555 555555555555555555555554

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.06  E-value=6.7e-07  Score=61.33  Aligned_cols=74  Identities=26%  Similarity=0.336  Sum_probs=59.2

Q ss_pred             CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214            2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ   81 (90)
Q Consensus         2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~   81 (90)
                      .|++. .+|+.+.. +++|+.|.+++|.  ++..- .  ......++.+|+++.|+++ .+|..+.+++.|+.|++.+|+
T Consensus       231 ~N~Lp-~vPecly~-l~~LrrLNLS~N~--iteL~-~--~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~Nk  302 (1255)
T KOG0444|consen  231 ENNLP-IVPECLYK-LRNLRRLNLSGNK--ITELN-M--TEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNK  302 (1255)
T ss_pred             ccCCC-cchHHHhh-hhhhheeccCcCc--eeeee-c--cHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCc
Confidence            34444 67888888 9999999999999  66542 2  3445567899999999999 899999999999999998887


Q ss_pred             Cc
Q 036214           82 LT   83 (90)
Q Consensus        82 l~   83 (90)
                      +.
T Consensus       303 L~  304 (1255)
T KOG0444|consen  303 LT  304 (1255)
T ss_pred             cc
Confidence            43

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.02  E-value=5.5e-06  Score=57.91  Aligned_cols=60  Identities=27%  Similarity=0.270  Sum_probs=44.2

Q ss_pred             CCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcccCC
Q 036214           19 SLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTGSIS   87 (90)
Q Consensus        19 ~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~~~p   87 (90)
                      +|+.|++++|.  ++. + |. .   ...|+.+++++|+++ .+|..+..+++|..+++++|++++.+|
T Consensus       403 ~L~~LdLS~N~--Lss-I-P~-l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~  462 (788)
T PRK15387        403 ELKELMVSGNR--LTS-L-PM-L---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL  462 (788)
T ss_pred             CCCEEEccCCc--CCC-C-Cc-c---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHH
Confidence            45566666666  443 2 33 2   235677888888888 788889999999999999999998754

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=97.95  E-value=1.6e-06  Score=60.93  Aligned_cols=64  Identities=33%  Similarity=0.385  Sum_probs=35.0

Q ss_pred             CcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCc
Q 036214            3 SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSL   72 (90)
Q Consensus         3 n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L   72 (90)
                      |.+....-+-+.+ +.+|+.|++++|+  +...  |.+.+..+..|+.|++++|+++ .+|..+..+..|
T Consensus       369 N~Ltd~c~p~l~~-~~hLKVLhLsyNr--L~~f--pas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L  432 (1081)
T KOG0618|consen  369 NHLTDSCFPVLVN-FKHLKVLHLSYNR--LNSF--PASKLRKLEELEELNLSGNKLT-TLPDTVANLGRL  432 (1081)
T ss_pred             Ccccccchhhhcc-ccceeeeeecccc--cccC--CHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhh
Confidence            4444444444555 6667777777776  4433  4324566666666666666665 444444433333

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.89  E-value=4.1e-06  Score=53.11  Aligned_cols=61  Identities=30%  Similarity=0.391  Sum_probs=46.1

Q ss_pred             CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcc
Q 036214           17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTG   84 (90)
Q Consensus        17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~   84 (90)
                      ++.|+.+|+++|.  ++..  .. ++.-.+.++.+++++|++. .+.. +..+++|+.|++++|.++.
T Consensus       283 Wq~LtelDLS~N~--I~~i--DE-SvKL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls~  343 (490)
T KOG1259|consen  283 WQELTELDLSGNL--ITQI--DE-SVKLAPKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLAE  343 (490)
T ss_pred             Hhhhhhccccccc--hhhh--hh-hhhhccceeEEecccccee-eehh-hhhcccceEeecccchhHh
Confidence            4568888888888  6543  33 5666788888888888887 5544 7888888888888887765

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=97.85  E-value=9.5e-06  Score=55.95  Aligned_cols=71  Identities=24%  Similarity=0.285  Sum_probs=44.6

Q ss_pred             ccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchh-hhhcCCCccEEeccCCcCcc
Q 036214            7 TSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPW-CLANMTSLRILDVSYNQLTG   84 (90)
Q Consensus         7 ~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~-~~~~l~~L~~l~l~~n~l~~   84 (90)
                      ..+|++++. +.-|..||++.|+  +...  |. .+..-.++..|++++|++. .+|. .+-++..|..|++++|.+..
T Consensus        93 sGiP~diF~-l~dLt~lDLShNq--L~Ev--P~-~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~  164 (1255)
T KOG0444|consen   93 SGIPTDIFR-LKDLTILDLSHNQ--LREV--PT-NLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLEM  164 (1255)
T ss_pred             CCCCchhcc-cccceeeecchhh--hhhc--ch-hhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhhh
Confidence            346777777 7777777777777  5543  55 5555566666666766666 4443 34466666666666666553

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=97.85  E-value=5.6e-06  Score=53.83  Aligned_cols=77  Identities=16%  Similarity=0.151  Sum_probs=65.3

Q ss_pred             CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214            2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ   81 (90)
Q Consensus         2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~   81 (90)
                      +|++++.-+.+|.+ ...+++|++..|+  +...- -. .|..+..|+.|++.+|+++-..|..|..+.+|..+.+-.|.
T Consensus       283 nN~i~~i~~~aFe~-~a~l~eL~L~~N~--l~~v~-~~-~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np  357 (498)
T KOG4237|consen  283 NNKITRIEDGAFEG-AAELQELYLTRNK--LEFVS-SG-MFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP  357 (498)
T ss_pred             CCccchhhhhhhcc-hhhhhhhhcCcch--HHHHH-HH-hhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence            67788777777777 9999999999999  66543 34 68899999999999999998888899999999999998887


Q ss_pred             Cc
Q 036214           82 LT   83 (90)
Q Consensus        82 l~   83 (90)
                      +.
T Consensus       358 ~~  359 (498)
T KOG4237|consen  358 FN  359 (498)
T ss_pred             cc
Confidence            63

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.83  E-value=4.2e-05  Score=47.68  Aligned_cols=13  Identities=38%  Similarity=0.634  Sum_probs=6.0

Q ss_pred             CCccEEeccCCcC
Q 036214           70 TSLRILDVSYNQL   82 (90)
Q Consensus        70 ~~L~~l~l~~n~l   82 (90)
                      ++|+.+++++|.+
T Consensus       193 ~~L~~L~L~~n~i  205 (319)
T cd00116         193 CNLEVLDLNNNGL  205 (319)
T ss_pred             CCCCEEeccCCcc
Confidence            3444444444443

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03210 Resistant to P

Probab=97.79  E-value=7.9e-05  Score=54.21  Aligned_cols=74  Identities=18%  Similarity=0.229  Sum_probs=41.9

Q ss_pred             chhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcccCCC
Q 036214            9 FLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTGSISL   88 (90)
Q Consensus         9 ~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~   88 (90)
                      +++.+.. +++|+.++++++.  .-..+ |  .+..+++|+.|++++|.....+|..+..+++|+.|++++|...+.+|.
T Consensus       626 L~~~~~~-l~~Lk~L~Ls~~~--~l~~i-p--~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~  699 (1153)
T PLN03210        626 LWDGVHS-LTGLRNIDLRGSK--NLKEI-P--DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPT  699 (1153)
T ss_pred             ccccccc-CCCCCEEECCCCC--CcCcC-C--ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCC
Confidence            3444444 6666666666554  22322 2  345556666777666544346666666667777777766554444443

syringae 6; Provisional

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=97.77  E-value=4e-06  Score=59.05  Aligned_cols=71  Identities=35%  Similarity=0.497  Sum_probs=48.9

Q ss_pred             ccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcc
Q 036214            7 TSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTG   84 (90)
Q Consensus         7 ~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~   84 (90)
                      +.+|+.....+..|+.|++++|.  ++. + |. ....+..|+++...+|++. .+| .+..++.|+.+|++.|+++.
T Consensus       396 ~~fpas~~~kle~LeeL~LSGNk--L~~-L-p~-tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~  466 (1081)
T KOG0618|consen  396 NSFPASKLRKLEELEELNLSGNK--LTT-L-PD-TVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSE  466 (1081)
T ss_pred             ccCCHHHHhchHHhHHHhcccch--hhh-h-hH-HHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhh
Confidence            35666655557778888888888  654 3 65 6667777777777777776 666 56667777777777776654

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.71  E-value=5.5e-05  Score=47.15  Aligned_cols=38  Identities=26%  Similarity=0.392  Sum_probs=18.9

Q ss_pred             ccccEEEccCCcCCC----cchhhhhcCCCccEEeccCCcCc
Q 036214           46 VHLQELYIASNDLRG----SLPWCLANMTSLRILDVSYNQLT   83 (90)
Q Consensus        46 ~~l~~l~l~~n~~~~----~~p~~~~~l~~L~~l~l~~n~l~   83 (90)
                      ++|+.+++++|.+++    .++..+..+..|+.+++++|.+.
T Consensus       137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  178 (319)
T cd00116         137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG  178 (319)
T ss_pred             CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCc
Confidence            455555555555542    12223344445555555555554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03210 Resistant to P

Probab=97.68  E-value=0.00022  Score=51.97  Aligned_cols=77  Identities=17%  Similarity=0.361  Sum_probs=48.8

Q ss_pred             cCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCc---------------------ccccEEEccCCcCCCcc
Q 036214            4 ALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSL---------------------VHLQELYIASNDLRGSL   62 (90)
Q Consensus         4 ~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l---------------------~~l~~l~l~~n~~~~~~   62 (90)
                      ...+.+|..+.. +++|+.|++++|.  .-+.+ |. .. .+                     .+++.|++++|.+. .+
T Consensus       789 ~~l~~lP~si~~-L~~L~~L~Ls~C~--~L~~L-P~-~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~-~i  861 (1153)
T PLN03210        789 PSLVELPSSIQN-LHKLEHLEIENCI--NLETL-PT-GI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIE-EV  861 (1153)
T ss_pred             CCccccChhhhC-CCCCCEEECCCCC--CcCee-CC-CC-CccccCEEECCCCCccccccccccccCEeECCCCCCc-cC
Confidence            345567777777 8888888888764  22223 32 11 22                     34566666667776 67


Q ss_pred             hhhhhcCCCccEEeccCCcCcccCC
Q 036214           63 PWCLANMTSLRILDVSYNQLTGSIS   87 (90)
Q Consensus        63 p~~~~~l~~L~~l~l~~n~l~~~~p   87 (90)
                      |..+..+++|+.|++++|+--..+|
T Consensus       862 P~si~~l~~L~~L~L~~C~~L~~l~  886 (1153)
T PLN03210        862 PWWIEKFSNLSFLDMNGCNNLQRVS  886 (1153)
T ss_pred             hHHHhcCCCCCEEECCCCCCcCccC
Confidence            7788888888888888754333344

syringae 6; Provisional

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.60  E-value=1.8e-05  Score=53.59  Aligned_cols=67  Identities=27%  Similarity=0.438  Sum_probs=45.3

Q ss_pred             hhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcc
Q 036214           10 LQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTG   84 (90)
Q Consensus        10 p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~   84 (90)
                      |..+.+ +.+|+.|.+..|+  +...  |. ++..++ |..+|++.|++. .+|-.|.+|..|+++-|++|.+++
T Consensus       182 psql~~-l~slr~l~vrRn~--l~~l--p~-El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  182 PSQLGY-LTSLRDLNVRRNH--LEDL--PE-ELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             hHHhhh-HHHHHHHHHhhhh--hhhC--CH-HHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCCC
Confidence            333444 4444555555555  4332  44 444443 678899999998 888889999999999999998875

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.56  E-value=5.5e-05  Score=48.18  Aligned_cols=66  Identities=23%  Similarity=0.258  Sum_probs=43.8

Q ss_pred             cchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214            8 SFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ   81 (90)
Q Consensus         8 ~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~   81 (90)
                      .+.+...- ++.++.|+++.|.  +..   .+ .+..+.+|+.+|+++|.++ ....+-.++-+.+.|.++.|.
T Consensus       298 ~iDESvKL-~Pkir~L~lS~N~--i~~---v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~  363 (490)
T KOG1259|consen  298 QIDESVKL-APKLRRLILSQNR--IRT---VQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNK  363 (490)
T ss_pred             hhhhhhhh-ccceeEEeccccc--eee---eh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhh
Confidence            34445555 6788999999998  554   33 5778888899999998877 444444445555555555543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.52  E-value=1.6e-05  Score=45.18  Aligned_cols=61  Identities=26%  Similarity=0.341  Sum_probs=36.6

Q ss_pred             CCCcEEeccCCccccccccchhhhhcCc-ccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcc
Q 036214           18 SSLKYLSLSGSTIGINSSMILDQGLCSL-VHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTG   84 (90)
Q Consensus        18 ~~l~~L~l~~n~~~~~~~~~~~~~~~~l-~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~   84 (90)
                      ..|..+++++|.  +...  |. .|... +..+.++++.|.++ .+|..+..++.|+.++++.|.+.-
T Consensus        53 ~el~~i~ls~N~--fk~f--p~-kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~  114 (177)
T KOG4579|consen   53 YELTKISLSDNG--FKKF--PK-KFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNA  114 (177)
T ss_pred             ceEEEEecccch--hhhC--CH-HHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCcccc
Confidence            345556666666  5543  44 33332 35666666767666 666666666667777776666543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=97.50  E-value=0.0004  Score=48.79  Aligned_cols=35  Identities=34%  Similarity=0.394  Sum_probs=17.0

Q ss_pred             cccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcc
Q 036214           47 HLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTG   84 (90)
Q Consensus        47 ~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~   84 (90)
                      .|+.|+++.|+++ .+|..+.  .+|+.|++++|++++
T Consensus       263 ~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~  297 (754)
T PRK15370        263 ALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT  297 (754)
T ss_pred             CCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc
Confidence            3455555555554 3443322  245555666555553

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=97.36  E-value=0.00056  Score=48.07  Aligned_cols=68  Identities=24%  Similarity=0.339  Sum_probs=41.2

Q ss_pred             CcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcC
Q 036214            3 SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQL   82 (90)
Q Consensus         3 n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l   82 (90)
                      |++. .+|..+.   .+|+.|++++|.  ++. + |. .+.  .+|+.+++++|.+. .+|..+.  .+|+.|++++|++
T Consensus       209 N~Lt-sLP~~l~---~nL~~L~Ls~N~--Lts-L-P~-~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L  274 (754)
T PRK15370        209 NELK-SLPENLQ---GNIKTLYANSNQ--LTS-I-PA-TLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKI  274 (754)
T ss_pred             CCCC-cCChhhc---cCCCEEECCCCc--ccc-C-Ch-hhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCcc
Confidence            4444 4555443   367777777777  554 3 44 332  35777777777776 5665543  3677777777776


Q ss_pred             cc
Q 036214           83 TG   84 (90)
Q Consensus        83 ~~   84 (90)
                      ..
T Consensus       275 ~~  276 (754)
T PRK15370        275 SC  276 (754)
T ss_pred             Cc
Confidence            63

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.26  E-value=8.3e-05  Score=42.36  Aligned_cols=72  Identities=21%  Similarity=0.288  Sum_probs=59.1

Q ss_pred             CccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCc
Q 036214            6 NTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLT   83 (90)
Q Consensus         6 ~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~   83 (90)
                      ...+|+.|...++.++.+.++.|.  ++..  |. ++..++.|+.++++.|.+. ..|+.+..+.++..|+..+|...
T Consensus        65 fk~fp~kft~kf~t~t~lNl~~ne--isdv--Pe-E~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen   65 FKKFPKKFTIKFPTATTLNLANNE--ISDV--PE-ELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             hhhCCHHHhhccchhhhhhcchhh--hhhc--hH-HHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence            346777877756788999999999  7754  87 8889999999999999998 77888888888888888777654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.12  E-value=0.00028  Score=45.57  Aligned_cols=60  Identities=38%  Similarity=0.484  Sum_probs=35.9

Q ss_pred             CCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcc
Q 036214           19 SLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTG   84 (90)
Q Consensus        19 ~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~   84 (90)
                      +|+.|++++|.  +...  +. ....++.|+.++++.|.+. .+|.....++.|..+++++|++..
T Consensus       141 nL~~L~l~~N~--i~~l--~~-~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~~  200 (394)
T COG4886         141 NLKELDLSDNK--IESL--PS-PLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISD  200 (394)
T ss_pred             hcccccccccc--hhhh--hh-hhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCcccc
Confidence            56666666666  4432  33 4556666666666666666 555544455666666666666554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.12  E-value=8.9e-05  Score=46.68  Aligned_cols=69  Identities=38%  Similarity=0.382  Sum_probs=56.8

Q ss_pred             HHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchh--hhhcCCCccEEeccCCcCcccCCC
Q 036214           13 IGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPW--CLANMTSLRILDVSYNQLTGSISL   88 (90)
Q Consensus        13 ~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~--~~~~l~~L~~l~l~~n~l~~~~p~   88 (90)
                      +..+|+.|++|.|+-|.  ++...    .+..++.|+.++|..|.+. .+.+  .+.++++|+.|.+..|...|.-+.
T Consensus        36 ic~kMp~lEVLsLSvNk--IssL~----pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENPCc~~ag~  106 (388)
T KOG2123|consen   36 ICEKMPLLEVLSLSVNK--ISSLA----PLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENPCCGEAGQ  106 (388)
T ss_pred             HHHhcccceeEEeeccc--cccch----hHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCCcccccch
Confidence            44559999999999999  77643    5778899999999999998 5554  467899999999999998886554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.02  E-value=0.00039  Score=42.91  Aligned_cols=65  Identities=22%  Similarity=0.219  Sum_probs=33.5

Q ss_pred             CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCC-cchhhhhcCCCccEEeccCCcCc
Q 036214           17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRG-SLPWCLANMTSLRILDVSYNQLT   83 (90)
Q Consensus        17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~-~~p~~~~~l~~L~~l~l~~n~l~   83 (90)
                      ++.|++|+++.|..+..+.. .. ....+++|+++.++.|+++. +.-.....+.+|..|++.+|..+
T Consensus        64 Lp~LkkL~lsdn~~~~~~~l-~v-l~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen   64 LPKLKKLELSDNYRRVSGGL-EV-LAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVT  129 (260)
T ss_pred             cchhhhhcccCCcccccccc-ee-hhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCcc
Confidence            55666777776621133333 22 23344667777777776652 00112334455666666666544

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=96.96  E-value=0.00011  Score=51.46  Aligned_cols=59  Identities=29%  Similarity=0.385  Sum_probs=32.0

Q ss_pred             CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcC
Q 036214           17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQL   82 (90)
Q Consensus        17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l   82 (90)
                      +++++.|+|+.|+  +..   .+ .+..++.|+.||+++|++. .+|..-..-..|..|.+++|-+
T Consensus       186 l~ale~LnLshNk--~~~---v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l  244 (1096)
T KOG1859|consen  186 LPALESLNLSHNK--FTK---VD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNAL  244 (1096)
T ss_pred             HHHhhhhccchhh--hhh---hH-HHHhcccccccccccchhc-cccccchhhhhheeeeecccHH
Confidence            4566667777777  553   22 5666667777777777666 4444221111244444444443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=96.93  E-value=8.3e-05  Score=50.53  Aligned_cols=72  Identities=32%  Similarity=0.368  Sum_probs=50.7

Q ss_pred             CCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcc
Q 036214            5 LNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTG   84 (90)
Q Consensus         5 ~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~   84 (90)
                      -.+.+|+++.. ...+..||.+.|.  +...  |. .+..+..|+.+.+..|.+. .+|+.+..++ |..||++.|++..
T Consensus       154 kl~~lp~~ig~-~~tl~~ld~s~ne--i~sl--ps-ql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis~  225 (722)
T KOG0532|consen  154 KLTSLPEEIGL-LPTLAHLDVSKNE--IQSL--PS-QLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKISY  225 (722)
T ss_pred             ccccCCccccc-chhHHHhhhhhhh--hhhc--hH-HhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCceee
Confidence            33466777765 7777777777777  4442  55 6777777777777888777 6677676555 7888888888764

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.93  E-value=0.00065  Score=41.95  Aligned_cols=61  Identities=21%  Similarity=0.344  Sum_probs=47.4

Q ss_pred             CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCC--cCCCcchhhhhcCCCccEEeccCCcCc
Q 036214           17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASN--DLRGSLPWCLANMTSLRILDVSYNQLT   83 (90)
Q Consensus        17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n--~~~~~~p~~~~~l~~L~~l~l~~n~l~   83 (90)
                      +..++.+.+....  ++...    .+..++.|+.|.++.|  ++.+.++-....+++|+++.+++|++.
T Consensus        42 ~~~le~ls~~n~g--ltt~~----~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   42 FVELELLSVINVG--LTTLT----NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             ccchhhhhhhccc--eeecc----cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            4556677666666  65432    6788899999999999  666677666777899999999999876

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.90  E-value=0.00061  Score=26.30  Aligned_cols=17  Identities=35%  Similarity=0.544  Sum_probs=7.8

Q ss_pred             ccEEEccCCcCCCcchhh
Q 036214           48 LQELYIASNDLRGSLPWC   65 (90)
Q Consensus        48 l~~l~l~~n~~~~~~p~~   65 (90)
                      |+++++++|+++ .+|..
T Consensus         2 L~~Ldls~n~l~-~ip~~   18 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSS   18 (22)
T ss_dssp             ESEEEETSSEES-EEGTT
T ss_pred             ccEEECCCCcCE-eCChh
Confidence            344444444444 44433

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=96.78  E-value=0.0035  Score=44.41  Aligned_cols=41  Identities=15%  Similarity=0.259  Sum_probs=18.9

Q ss_pred             cchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCC
Q 036214            8 SFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLR   59 (90)
Q Consensus         8 ~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~   59 (90)
                      .+|+.+..   +++.|++..|.  ++. + |.    .+++|+.|++++|+++
T Consensus       215 sLP~~l~~---~L~~L~L~~N~--Lt~-L-P~----lp~~Lk~LdLs~N~Lt  255 (788)
T PRK15387        215 TLPDCLPA---HITTLVIPDNN--LTS-L-PA----LPPELRTLEVSGNQLT  255 (788)
T ss_pred             cCCcchhc---CCCEEEccCCc--CCC-C-CC----CCCCCcEEEecCCccC
Confidence            45554432   45555555555  433 1 22    1234555555555544

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=96.73  E-value=0.0012  Score=47.22  Aligned_cols=71  Identities=31%  Similarity=0.431  Sum_probs=58.2

Q ss_pred             CcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccC
Q 036214            3 SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSY   79 (90)
Q Consensus         3 n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~   79 (90)
                      |.-.+.+|..++. +-+|++|++++..  +.. . |. .+..+..|.+|++..+.....+|.....|.+|+++.+..
T Consensus       581 ~~~l~~LP~~I~~-Li~LryL~L~~t~--I~~-L-P~-~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~  651 (889)
T KOG4658|consen  581 NSSLSKLPSSIGE-LVHLRYLDLSDTG--ISH-L-PS-GLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR  651 (889)
T ss_pred             CCccCcCChHHhh-hhhhhcccccCCC--ccc-c-ch-HHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence            3345678999999 9999999999999  664 4 88 899999999999998876546667677799999988754

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=96.69  E-value=0.00098  Score=43.68  Aligned_cols=38  Identities=37%  Similarity=0.411  Sum_probs=15.8

Q ss_pred             cCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcC
Q 036214           43 CSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQL   82 (90)
Q Consensus        43 ~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l   82 (90)
                      ..+.+|++++++.|.++ .+ ..+..+..|+.|++++|.+
T Consensus       115 ~~~~~L~~L~ls~N~I~-~i-~~l~~l~~L~~L~l~~N~i  152 (414)
T KOG0531|consen  115 SSLVNLQVLDLSFNKIT-KL-EGLSTLTLLKELNLSGNLI  152 (414)
T ss_pred             hhhhcchheeccccccc-cc-cchhhccchhhheeccCcc
Confidence            33444444444444444 22 1233333344444444443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.66  E-value=0.0032  Score=38.00  Aligned_cols=58  Identities=21%  Similarity=0.294  Sum_probs=31.6

Q ss_pred             CcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCc
Q 036214           20 LKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLT   83 (90)
Q Consensus        20 l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~   83 (90)
                      ...+||+.|.  +..   .. .+..+..|.+|.+..|+++..-|..-..+++|+.|.+.+|++.
T Consensus        44 ~d~iDLtdNd--l~~---l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~  101 (233)
T KOG1644|consen   44 FDAIDLTDND--LRK---LD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ  101 (233)
T ss_pred             cceecccccc--hhh---cc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh
Confidence            3445666666  332   12 4555666666666666666444444444555666666666554

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=96.60  E-value=0.00084  Score=43.99  Aligned_cols=64  Identities=31%  Similarity=0.513  Sum_probs=48.4

Q ss_pred             HHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCccc
Q 036214           13 IGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTGS   85 (90)
Q Consensus        13 ~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~~   85 (90)
                      +.. +++|++|++++|.  ++...    .+..+..|+.|++++|.++ .+. .+..+..|+.+++++|.+...
T Consensus       114 l~~-~~~L~~L~ls~N~--I~~i~----~l~~l~~L~~L~l~~N~i~-~~~-~~~~l~~L~~l~l~~n~i~~i  177 (414)
T KOG0531|consen  114 LSS-LVNLQVLDLSFNK--ITKLE----GLSTLTLLKELNLSGNLIS-DIS-GLESLKSLKLLDLSYNRIVDI  177 (414)
T ss_pred             hhh-hhcchheeccccc--ccccc----chhhccchhhheeccCcch-hcc-CCccchhhhcccCCcchhhhh
Confidence            344 7889999999999  76543    4566777899999999988 443 355578888999998887654

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=96.52  E-value=0.00056  Score=48.09  Aligned_cols=73  Identities=27%  Similarity=0.353  Sum_probs=50.2

Q ss_pred             CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214            2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ   81 (90)
Q Consensus         2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~   81 (90)
                      +|++...  +.+.. ++.|+.||+++|.  +...  |.-....+. |+.|.+++|.++ .+ ..+.++.+|..||+++|-
T Consensus       196 hNk~~~v--~~Lr~-l~~LkhLDlsyN~--L~~v--p~l~~~gc~-L~~L~lrnN~l~-tL-~gie~LksL~~LDlsyNl  265 (1096)
T KOG1859|consen  196 HNKFTKV--DNLRR-LPKLKHLDLSYNC--LRHV--PQLSMVGCK-LQLLNLRNNALT-TL-RGIENLKSLYGLDLSYNL  265 (1096)
T ss_pred             hhhhhhh--HHHHh-cccccccccccch--hccc--cccchhhhh-heeeeecccHHH-hh-hhHHhhhhhhccchhHhh
Confidence            3455433  25666 9999999999999  5543  331233333 888888988887 33 457778888888888887


Q ss_pred             Ccc
Q 036214           82 LTG   84 (90)
Q Consensus        82 l~~   84 (90)
                      +.+
T Consensus       266 l~~  268 (1096)
T KOG1859|consen  266 LSE  268 (1096)
T ss_pred             hhc
Confidence            654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=96.48  E-value=0.0016  Score=42.11  Aligned_cols=67  Identities=27%  Similarity=0.354  Sum_probs=52.3

Q ss_pred             cchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214            8 SFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ   81 (90)
Q Consensus         8 ~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~   81 (90)
                      .+|..+.. ++.|+.|+++.|.  +...  +. .......++.+++++|++. .+|........|+.+.+++|.
T Consensus       154 ~l~~~~~~-l~~L~~L~l~~N~--l~~l--~~-~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~  220 (394)
T COG4886         154 SLPSPLRN-LPNLKNLDLSFND--LSDL--PK-LLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNS  220 (394)
T ss_pred             hhhhhhhc-cccccccccCCch--hhhh--hh-hhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCc
Confidence            44455667 8999999999999  6653  44 3447888999999999999 778776666778888888884

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=95.98  E-value=0.0067  Score=42.57  Aligned_cols=49  Identities=22%  Similarity=0.371  Sum_probs=31.4

Q ss_pred             cchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCC
Q 036214            8 SFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLR   59 (90)
Q Consensus         8 ~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~   59 (90)
                      ..|..++.-+|+|+.|.+++-.  +.....-. .+.++++|..||+++.+++
T Consensus       138 ~W~~kig~~LPsL~sL~i~~~~--~~~~dF~~-lc~sFpNL~sLDIS~TnI~  186 (699)
T KOG3665|consen  138 GWPKKIGTMLPSLRSLVISGRQ--FDNDDFSQ-LCASFPNLRSLDISGTNIS  186 (699)
T ss_pred             cHHHHHhhhCcccceEEecCce--ecchhHHH-HhhccCccceeecCCCCcc
Confidence            4455555557788888777766  44332122 4567777888888887776

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.89  E-value=0.011  Score=35.71  Aligned_cols=63  Identities=24%  Similarity=0.198  Sum_probs=41.4

Q ss_pred             CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchh--hhhcCCCccEEeccCCcCcc
Q 036214           17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPW--CLANMTSLRILDVSYNQLTG   84 (90)
Q Consensus        17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~--~~~~l~~L~~l~l~~n~l~~   84 (90)
                      ++.|.+|.+..|.  ++... |. --..++.+..|.+.+|.+. .+.+  .+..++.|+.|.+-+|+.+.
T Consensus        63 l~rL~tLll~nNr--It~I~-p~-L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Ltll~Npv~~  127 (233)
T KOG1644|consen   63 LPRLHTLLLNNNR--ITRID-PD-LDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLTLLGNPVEH  127 (233)
T ss_pred             ccccceEEecCCc--ceeec-cc-hhhhccccceEEecCcchh-hhhhcchhccCCccceeeecCCchhc
Confidence            6677788888888  66544 54 3445567788888888776 3332  34566777777777776553

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=95.82  E-value=0.012  Score=38.19  Aligned_cols=66  Identities=24%  Similarity=0.238  Sum_probs=30.7

Q ss_pred             CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCC----cchhhhhcCCCccEEeccCCcC
Q 036214           17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRG----SLPWCLANMTSLRILDVSYNQL   82 (90)
Q Consensus        17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~----~~p~~~~~l~~L~~l~l~~n~l   82 (90)
                      .+.|+.+.+..|.|+..|.......+..+++|+.||+.+|.++.    .+...+..+++|+.+++++|.+
T Consensus       184 ~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll  253 (382)
T KOG1909|consen  184 HPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLL  253 (382)
T ss_pred             ccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccc
Confidence            44555555555553333321011134455555666666655542    1222334445555555555544

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=95.68  E-value=0.0035  Score=41.64  Aligned_cols=13  Identities=31%  Similarity=0.514  Sum_probs=6.5

Q ss_pred             CCccEEeccCCcC
Q 036214           70 TSLRILDVSYNQL   82 (90)
Q Consensus        70 ~~L~~l~l~~n~l   82 (90)
                      ++|+.|++..|++
T Consensus       301 ~kL~~L~i~~N~I  313 (505)
T KOG3207|consen  301 PKLEYLNISENNI  313 (505)
T ss_pred             ccceeeecccCcc
Confidence            4455555555544

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.61  E-value=0.014  Score=37.46  Aligned_cols=60  Identities=23%  Similarity=0.325  Sum_probs=29.5

Q ss_pred             CCCCcEEeccCCccccccccchhhhh-cCcccccEEEccCCcCCCcch-hhhhcCCCccEEeccCCc
Q 036214           17 MSSLKYLSLSGSTIGINSSMILDQGL-CSLVHLQELYIASNDLRGSLP-WCLANMTSLRILDVSYNQ   81 (90)
Q Consensus        17 l~~l~~L~l~~n~~~~~~~~~~~~~~-~~l~~l~~l~l~~n~~~~~~p-~~~~~l~~L~~l~l~~n~   81 (90)
                      ++.|+.|.++.|.  +...+  . .. ..+.+++++.+-+..+.+.-- ..+..++.+++++++.|+
T Consensus        96 lP~l~~LNls~N~--L~s~I--~-~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~  157 (418)
T KOG2982|consen   96 LPALTTLNLSCNS--LSSDI--K-SLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNS  157 (418)
T ss_pred             CccceEeeccCCc--CCCcc--c-cCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccch
Confidence            5566666666666  44432  1 22 234455555555555443221 233445555666666653

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.14  E-value=0.018  Score=36.98  Aligned_cols=65  Identities=23%  Similarity=0.277  Sum_probs=33.3

Q ss_pred             CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCc
Q 036214           17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLT   83 (90)
Q Consensus        17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~   83 (90)
                      .+.++++|+.+|.  ++...+..+-+..++.+++++++.|.+...+...-....+|+.+-+.+..+.
T Consensus        70 ~~~v~elDL~~N~--iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~  134 (418)
T KOG2982|consen   70 VTDVKELDLTGNL--ISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLS  134 (418)
T ss_pred             hhhhhhhhcccch--hccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCC
Confidence            4556666666666  4433211112455666666666666665433222223445666655544443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=94.95  E-value=0.012  Score=39.24  Aligned_cols=35  Identities=31%  Similarity=0.428  Sum_probs=14.8

Q ss_pred             ccccEEEccCCcCCCcch-hhhhcCCCccEEeccCC
Q 036214           46 VHLQELYIASNDLRGSLP-WCLANMTSLRILDVSYN   80 (90)
Q Consensus        46 ~~l~~l~l~~n~~~~~~p-~~~~~l~~L~~l~l~~n   80 (90)
                      .+++.|.+++|++++.-- .....+++|+.|+++.|
T Consensus       197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N  232 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEAN  232 (505)
T ss_pred             hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcc
Confidence            444445555554443211 22233444444544444

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=94.89  E-value=0.035  Score=36.06  Aligned_cols=71  Identities=25%  Similarity=0.314  Sum_probs=45.9

Q ss_pred             hHHHhhCCCCcEEeccCCcccccccc--chhhhhcCcccccEEEccCCcCCCcch----hhh-hcCCCccEEeccCCcCc
Q 036214           11 QSIGESMSSLKYLSLSGSTIGINSSM--ILDQGLCSLVHLQELYIASNDLRGSLP----WCL-ANMTSLRILDVSYNQLT   83 (90)
Q Consensus        11 ~~~~~~l~~l~~L~l~~n~~~~~~~~--~~~~~~~~l~~l~~l~l~~n~~~~~~p----~~~-~~l~~L~~l~l~~n~l~   83 (90)
                      ..+.. +++|++||+..|.  ++...  .....+..+++|+.++++++.+...-.    ..+ ...++|+.+.+.+|.++
T Consensus       207 eal~~-~~~LevLdl~DNt--ft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt  283 (382)
T KOG1909|consen  207 EALEH-CPHLEVLDLRDNT--FTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT  283 (382)
T ss_pred             HHHHh-CCcceeeecccch--hhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence            34555 8899999999998  55322  011146667788888888887764222    222 23567888888888765


Q ss_pred             c
Q 036214           84 G   84 (90)
Q Consensus        84 ~   84 (90)
                      .
T Consensus       284 ~  284 (382)
T KOG1909|consen  284 R  284 (382)
T ss_pred             H
Confidence            3

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.73  E-value=0.082  Score=20.77  Aligned_cols=13  Identities=38%  Similarity=0.636  Sum_probs=7.0

Q ss_pred             cccEEEccCCcCC
Q 036214           47 HLQELYIASNDLR   59 (90)
Q Consensus        47 ~l~~l~l~~n~~~   59 (90)
                      +|+.+++++|.+.
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00370        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            4455555555555

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.73  E-value=0.082  Score=20.77  Aligned_cols=13  Identities=38%  Similarity=0.636  Sum_probs=7.0

Q ss_pred             cccEEEccCCcCC
Q 036214           47 HLQELYIASNDLR   59 (90)
Q Consensus        47 ~l~~l~l~~n~~~   59 (90)
                      +|+.+++++|.+.
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00369        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            4455555555555

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=92.64  E-value=0.046  Score=21.15  Aligned_cols=11  Identities=36%  Similarity=0.492  Sum_probs=4.2

Q ss_pred             CCcEEeccCCc
Q 036214           19 SLKYLSLSGST   29 (90)
Q Consensus        19 ~l~~L~l~~n~   29 (90)
                      +|+.|++++|.
T Consensus         3 ~L~~L~l~~n~   13 (24)
T PF13516_consen    3 NLETLDLSNNQ   13 (24)
T ss_dssp             T-SEEE-TSSB
T ss_pred             CCCEEEccCCc
Confidence            34444444444

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=92.33  E-value=0.12  Score=36.57  Aligned_cols=57  Identities=33%  Similarity=0.505  Sum_probs=31.0

Q ss_pred             hCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcch--hhhhcCCCccEEeccC
Q 036214           16 SMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLP--WCLANMTSLRILDVSY   79 (90)
Q Consensus        16 ~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p--~~~~~l~~L~~l~l~~   79 (90)
                      .+++|+.||+++..  ++..   . .+..+++|+.|.+..=.+. ...  ..+.++++|+.||+|.
T Consensus       171 sFpNL~sLDIS~Tn--I~nl---~-GIS~LknLq~L~mrnLe~e-~~~~l~~LF~L~~L~vLDIS~  229 (699)
T KOG3665|consen  171 SFPNLRSLDISGTN--ISNL---S-GISRLKNLQVLSMRNLEFE-SYQDLIDLFNLKKLRVLDISR  229 (699)
T ss_pred             ccCccceeecCCCC--ccCc---H-HHhccccHHHHhccCCCCC-chhhHHHHhcccCCCeeeccc
Confidence            37889999999887  5532   1 4455555555544433333 111  1233455555555554

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=90.45  E-value=0.23  Score=32.20  Aligned_cols=65  Identities=23%  Similarity=0.211  Sum_probs=43.2

Q ss_pred             hHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhh---hhcCCCccEEeccCC
Q 036214           11 QSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWC---LANMTSLRILDVSYN   80 (90)
Q Consensus        11 ~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~---~~~l~~L~~l~l~~n   80 (90)
                      ..+..+++++..||++.|.- ++... .. .+..++.|+++.++.++.  ..|+.   +..+++|.+|++.++
T Consensus       306 ~tL~~rcp~l~~LDLSD~v~-l~~~~-~~-~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  306 STLVRRCPNLVHLDLSDSVM-LKNDC-FQ-EFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             HHHHHhCCceeeeccccccc-cCchH-HH-HHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            34555689999999998761 33322 33 677788888888877763  34554   456678888877554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.83  E-value=0.023  Score=36.19  Aligned_cols=60  Identities=22%  Similarity=0.206  Sum_probs=46.2

Q ss_pred             CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcc
Q 036214           17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTG   84 (90)
Q Consensus        17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~   84 (90)
                      +..+++|++-++.  +...   . -+..++.|+.+.|+.|.++ .+ ..+..|++|++|+|..|.+..
T Consensus        18 l~~vkKLNcwg~~--L~DI---s-ic~kMp~lEVLsLSvNkIs-sL-~pl~rCtrLkElYLRkN~I~s   77 (388)
T KOG2123|consen   18 LENVKKLNCWGCG--LDDI---S-ICEKMPLLEVLSLSVNKIS-SL-APLQRCTRLKELYLRKNCIES   77 (388)
T ss_pred             HHHhhhhcccCCC--ccHH---H-HHHhcccceeEEeeccccc-cc-hhHHHHHHHHHHHHHhccccc
Confidence            4467778887888  6543   2 4567888999999999998 44 347788999999999998754

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=89.41  E-value=0.42  Score=19.14  Aligned_cols=14  Identities=43%  Similarity=0.579  Sum_probs=8.2

Q ss_pred             CCccEEeccCCcCc
Q 036214           70 TSLRILDVSYNQLT   83 (90)
Q Consensus        70 ~~L~~l~l~~n~l~   83 (90)
                      .+|+.|+++.|.++
T Consensus         2 ~~L~~L~L~~NkI~   15 (26)
T smart00365        2 TNLEELDLSQNKIK   15 (26)
T ss_pred             CccCEEECCCCccc
Confidence            34566666666654

>PRK15386 type III secretion protein GogB; Provisional

Probab=89.17  E-value=1.5  Score=29.50  Aligned_cols=53  Identities=23%  Similarity=0.190  Sum_probs=28.8

Q ss_pred             CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCC-cCCCcchhhhhcCCCccEEeccCC
Q 036214           17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASN-DLRGSLPWCLANMTSLRILDVSYN   80 (90)
Q Consensus        17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n-~~~~~~p~~~~~l~~L~~l~l~~n   80 (90)
                      +.++..|++++|.  +...  |.    -..+|+.|.++++ .++ .+|..+.  .+|+.|.+++|
T Consensus        51 ~~~l~~L~Is~c~--L~sL--P~----LP~sLtsL~Lsnc~nLt-sLP~~LP--~nLe~L~Ls~C  104 (426)
T PRK15386         51 ARASGRLYIKDCD--IESL--PV----LPNELTEITIENCNNLT-TLPGSIP--EGLEKLTVCHC  104 (426)
T ss_pred             hcCCCEEEeCCCC--Cccc--CC----CCCCCcEEEccCCCCcc-cCCchhh--hhhhheEccCc
Confidence            6677788888776  5432  21    1234666666653 333 4444332  35666666665

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.02  E-value=0.15  Score=30.92  Aligned_cols=59  Identities=25%  Similarity=0.317  Sum_probs=31.3

Q ss_pred             CCCCcEEeccCCccccccccchhhhhcC-cccccEEEccCC-cCCCcchhhhhcCCCccEEecc
Q 036214           17 MSSLKYLSLSGSTIGINSSMILDQGLCS-LVHLQELYIASN-DLRGSLPWCLANMTSLRILDVS   78 (90)
Q Consensus        17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~-l~~l~~l~l~~n-~~~~~~p~~~~~l~~L~~l~l~   78 (90)
                      ++.++.|.+..+.  -.+..-.. .+.. .++|+.|++++| +++..--..+.++++|+.|.+.
T Consensus       124 l~~i~~l~l~~ck--~~dD~~L~-~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~  184 (221)
T KOG3864|consen  124 LRSIKSLSLANCK--YFDDWCLE-RLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY  184 (221)
T ss_pred             cchhhhheecccc--chhhHHHH-HhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence            5566666666655  33221011 2222 356777777766 4554434556666666666554

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=87.56  E-value=0.59  Score=18.79  Aligned_cols=14  Identities=57%  Similarity=0.662  Sum_probs=9.5

Q ss_pred             CCccEEeccCCcCc
Q 036214           70 TSLRILDVSYNQLT   83 (90)
Q Consensus        70 ~~L~~l~l~~n~l~   83 (90)
                      ++|++|++++|.+.
T Consensus         2 ~~L~~LdL~~N~i~   15 (28)
T smart00368        2 PSLRELDLSNNKLG   15 (28)
T ss_pred             CccCEEECCCCCCC
Confidence            35677777777764

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=87.00  E-value=0.44  Score=19.14  Aligned_cols=17  Identities=47%  Similarity=0.679  Sum_probs=10.3

Q ss_pred             cccEEEccCCcCCCcchh
Q 036214           47 HLQELYIASNDLRGSLPW   64 (90)
Q Consensus        47 ~l~~l~l~~n~~~~~~p~   64 (90)
                      +|+.|+++.|+++ .+|+
T Consensus         3 ~L~~L~vs~N~Lt-~LPe   19 (26)
T smart00364        3 SLKELNVSNNQLT-SLPE   19 (26)
T ss_pred             ccceeecCCCccc-cCcc
Confidence            4566666666666 5554

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=85.72  E-value=1.3  Score=28.56  Aligned_cols=39  Identities=23%  Similarity=0.300  Sum_probs=22.9

Q ss_pred             CcccccEEEccCCcCCCcchhh----hhcCCCccEEeccCCcC
Q 036214           44 SLVHLQELYIASNDLRGSLPWC----LANMTSLRILDVSYNQL   82 (90)
Q Consensus        44 ~l~~l~~l~l~~n~~~~~~p~~----~~~l~~L~~l~l~~n~l   82 (90)
                      .++.++..++++|.+....|+.    +.+-..|.+|.+++|.+
T Consensus        90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl  132 (388)
T COG5238          90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL  132 (388)
T ss_pred             cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence            3456666677777666555543    33445566666666654

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=84.08  E-value=3.1  Score=22.32  Aligned_cols=57  Identities=18%  Similarity=0.239  Sum_probs=25.0

Q ss_pred             CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccC
Q 036214           17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSY   79 (90)
Q Consensus        17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~   79 (90)
                      +..++.+.+..+-   .... .. .|..+..++.+.+.. .+...-...+..+.+++.+.+..
T Consensus        34 ~~~l~~i~~~~~~---~~i~-~~-~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~   90 (129)
T PF13306_consen   34 CTSLKSINFPNNL---TSIG-DN-AFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPS   90 (129)
T ss_dssp             -TT-SEEEESSTT---SCE--TT-TTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETT
T ss_pred             ccccccccccccc---cccc-ee-eeecccccccccccc-cccccccccccccccccccccCc
Confidence            4466666665532   2211 22 455555666666654 33312223455566666666644

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=83.37  E-value=0.24  Score=32.11  Aligned_cols=58  Identities=28%  Similarity=0.269  Sum_probs=29.7

Q ss_pred             CcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCC
Q 036214           20 LKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYN   80 (90)
Q Consensus        20 l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n   80 (90)
                      ++.+|++...  ++..- ...-+..+..|+.+.+.++++.+.+...+.+-.+|+.++++.+
T Consensus       187 lq~lDLS~s~--it~st-l~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~  244 (419)
T KOG2120|consen  187 LQHLDLSNSV--ITVST-LHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMC  244 (419)
T ss_pred             hHHhhcchhh--eeHHH-HHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccc
Confidence            5556666555  22111 1112344455666666666666555555555555666655543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	90
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-08
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-07
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-07
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-04
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	7e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-04
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	1e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 50.3 bits (121), Expect = 6e-09
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 5/83 (6%)

Query: 5   LNTSFLQSIGESMSSLKYLSLSGSTI-GINSSMILDQGLCSLVHLQELYIASNDLRGSLP 63
           L+     S G  ++SL+ L LS ++I G N    +         L+ L I+ N + G + 
Sbjct: 138 LDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSD--GCGELKHLAISGNKISGDVD 195

Query: 64  WCLANMTSLRILDVSYNQLTGSI 86
             ++   +L  LDVS N  +  I
Sbjct: 196 --VSRCVNLEFLDVSSNNFSTGI 216

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 49.9 bits (120), Expect = 7e-09
 Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 6/77 (7%)

Query: 16  SMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLA---NMTSL 72
           S S LK+L++S +T+          G   L  L+ L +++N + G+             L
Sbjct: 124 SCSGLKFLNVSSNTL---DFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGEL 180

Query: 73  RILDVSYNQLTGSISLS 89
           + L +S N+++G + +S
Sbjct: 181 KHLAISGNKISGDVDVS 197

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 49.9 bits (120), Expect = 7e-09
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 9/77 (11%)

Query: 16  SMSSLKYLSLSGSTI--GINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLR 73
              +L++L +S +    GI         L     LQ L I+ N L G     ++  T L+
Sbjct: 198 RCVNLEFLDVSSNNFSTGIPF-------LGDCSALQHLDISGNKLSGDFSRAISTCTELK 250

Query: 74  ILDVSYNQLTGSISLSP 90
           +L++S NQ  G I   P
Sbjct: 251 LLNISSNQFVGPIPPLP 267

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 49.5 bits (119), Expect = 9e-09
 Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 5/79 (6%)

Query: 12  SIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLP-WCLANMT 70
            +  +  +L  L LSG+         +     S   L+ L ++SN+  G LP   L  M 
Sbjct: 288 FLSGACDTLTGLDLSGNHF----YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR 343

Query: 71  SLRILDVSYNQLTGSISLS 89
            L++LD+S+N+ +G +  S
Sbjct: 344 GLKVLDLSFNEFSGELPES 362

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.8 bits (117), Expect = 2e-08
 Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 3/75 (4%)

Query: 15  ESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRI 74
             + SL+YLSL+ +     +  I D    +   L  L ++ N   G++P    + + L  
Sbjct: 266 LPLKSLQYLSLAENKF---TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLES 322

Query: 75  LDVSYNQLTGSISLS 89
           L +S N  +G + + 
Sbjct: 323 LALSSNNFSGELPMD 337

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.0 bits (115), Expect = 3e-08
 Identities = 22/74 (29%), Positives = 43/74 (58%), Gaps = 7/74 (9%)

Query: 16  SMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRIL 75
               LK+L++SG+ I   S  +    +   V+L+ L ++SN+    +P+ L + ++L+ L
Sbjct: 176 GCGELKHLAISGNKI---SGDV---DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHL 228

Query: 76  DVSYNQLTGSISLS 89
           D+S N+L+G  S +
Sbjct: 229 DISGNKLSGDFSRA 242

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.0 bits (115), Expect = 4e-08
 Identities = 15/45 (33%), Positives = 25/45 (55%)

Query: 42  LCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTGSI 86
           L +   L  L+++ N L G++P  L +++ LR L +  N L G I
Sbjct: 414 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 458

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.4 bits (111), Expect = 1e-07
 Identities = 14/45 (31%), Positives = 25/45 (55%)

Query: 42  LCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTGSI 86
           +  L +L  L +++N   G++P  L +  SL  LD++ N   G+I
Sbjct: 510 IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.1 bits (110), Expect = 2e-07
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 16  SMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMT-SLRI 74
           S S L+ L+LS +     S  +    L  +  L+ L ++ N+  G LP  L N++ SL  
Sbjct: 316 SCSLLESLALSSNNF---SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 372

Query: 75  LDVSYNQLTGSI 86
           LD+S N  +G I
Sbjct: 373 LDLSSNNFSGPI 384

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.7 bits (104), Expect = 1e-06
 Identities = 16/47 (34%), Positives = 26/47 (55%)

Query: 40  QGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTGSI 86
             +  L  L  L ++SN L G +P  ++ +T L  +D+S N L+G I
Sbjct: 674 DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 720

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.7 bits (104), Expect = 1e-06
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 7/77 (9%)

Query: 16  SMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPW--CLANMTSLR 73
           S++ L+ L LS S I  + S     G      L  L ++ N L G +     L + + L+
Sbjct: 75  SLTGLESLFLSNSHINGSVS-----GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLK 129

Query: 74  ILDVSYNQLTGSISLSP 90
            L+VS N L     +S 
Sbjct: 130 FLNVSSNTLDFPGKVSG 146

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 42.6 bits (101), Expect = 2e-06
 Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 2/71 (2%)

Query: 16  SMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRIL 75
           +    K    +G+ +      I  + L  L       I S    G       N  S+  L
Sbjct: 580 NDGMKKECHGAGNLL--EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL 637

Query: 76  DVSYNQLTGSI 86
           D+SYN L+G I
Sbjct: 638 DMSYNMLSGYI 648

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 42.6 bits (101), Expect = 2e-06
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 7/69 (10%)

Query: 19  SLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVS 78
            L    L+     ++SS      L SL  L+ L+++++ + GS+        SL  LD+S
Sbjct: 56  DLSSKPLNVGFSAVSSS------LLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLS 108

Query: 79  YNQLTGSIS 87
            N L+G ++
Sbjct: 109 RNSLSGPVT 117

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 39.1 bits (92), Expect = 4e-05
 Identities = 14/71 (19%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 16  SMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRIL 75
            +S+    +++                 +   +  L ++ N L G +P  + +M  L IL
Sbjct: 606 RLSTRNPCNITS----RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFIL 661

Query: 76  DVSYNQLTGSI 86
           ++ +N ++GSI
Sbjct: 662 NLGHNDISGSI 672

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 38.0 bits (89), Expect = 1e-04
 Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 7/77 (9%)

Query: 16  SMSSLKYLSLSGSTIGINSSMILDQGLCSL-VHLQELYIASNDLRGSLP--WCLANMTSL 72
            M  LK L LS +      S  L + L +L   L  L ++SN+  G +    C     +L
Sbjct: 341 KMRGLKVLDLSFNEF----SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 396

Query: 73  RILDVSYNQLTGSISLS 89
           + L +  N  TG I  +
Sbjct: 397 QELYLQNNGFTGKIPPT 413

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 48.3 bits (116), Expect = 3e-08
 Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 5/75 (6%)

Query: 12  SIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTS 71
           +I   ++ L YL ++ + +   S  I D  L  +  L  L  + N L G+LP  ++++ +
Sbjct: 96  AIA-KLTQLHYLYITHTNV---SGAIPDF-LSQIKTLVTLDFSYNALSGTLPPSISSLPN 150

Query: 72  LRILDVSYNQLTGSI 86
           L  +    N+++G+I
Sbjct: 151 LVGITFDGNRISGAI 165

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 46.4 bits (111), Expect = 1e-07
 Identities = 15/43 (34%), Positives = 23/43 (53%)

Query: 44  SLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTGSI 86
              +L  L + +N + G+LP  L  +  L  L+VS+N L G I
Sbjct: 242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 46.0 bits (110), Expect = 1e-07
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 3/72 (4%)

Query: 16  SMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIAS-NDLRGSLPWCLANMTSLRI 74
               +  L LSG    +     +   L +L +L  LYI   N+L G +P  +A +T L  
Sbjct: 48  QTYRVNNLDLSGL--NLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHY 105

Query: 75  LDVSYNQLTGSI 86
           L +++  ++G+I
Sbjct: 106 LYITHTNVSGAI 117

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 37.5 bits (88), Expect = 1e-04
 Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 21/86 (24%)

Query: 12  SIGESMSSLKYLSLSG--------STIGINSSMILDQGLCSLVHLQELYIASNDLRGSLP 63
           SI  S+ +L  ++  G         + G  S +              + I+ N L G +P
Sbjct: 144 SIS-SLPNLVGITFDGNRISGAIPDSYGSFSKL-----------FTSMTISRNRLTGKIP 191

Query: 64  WCLANMTSLRILDVSYNQLTGSISLS 89
              AN+ +L  +D+S N L G  S+ 
Sbjct: 192 PTFANL-NLAFVDLSRNMLEGDASVL 216

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.7 bits (114), Expect = 4e-08
 Identities = 10/72 (13%), Positives = 29/72 (40%), Gaps = 3/72 (4%)

Query: 16  SMSSLKYLSLSG---STIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSL 72
           S+S +  +  S     ++   +   LD      +++  + +++N +        +  + L
Sbjct: 400 SVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPL 459

Query: 73  RILDVSYNQLTG 84
             +++  N LT 
Sbjct: 460 SSINLMGNMLTE 471

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.5 bits (103), Expect = 1e-06
 Identities = 15/76 (19%), Positives = 32/76 (42%), Gaps = 5/76 (6%)

Query: 16  SMSSLKYLSLSG----STIGINSSMILDQGLCSLVHLQELYIASNDLR-GSLPWCLANMT 70
           ++  ++ ++++     S   +               +Q +YI  N+L+   +   L  M 
Sbjct: 271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMK 330

Query: 71  SLRILDVSYNQLTGSI 86
            L +L+  YNQL G +
Sbjct: 331 KLGMLECLYNQLEGKL 346

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 40.8 bits (96), Expect = 1e-05
 Identities = 11/97 (11%), Positives = 33/97 (34%), Gaps = 16/97 (16%)

Query: 7   TSFLQSIGESMSSLKYLSLSG---------------STIGINSSMILDQGLCSLVHLQEL 51
           T   +++   ++ L+   +                 ++         D    +L  L ++
Sbjct: 196 TFVSKAVMR-LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDV 254

Query: 52  YIASNDLRGSLPWCLANMTSLRILDVSYNQLTGSISL 88
            + +      LP  L  +  +++++V+ N+      L
Sbjct: 255 EVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQL 291

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 40.0 bits (94), Expect = 2e-05
 Identities = 9/88 (10%), Positives = 29/88 (32%), Gaps = 10/88 (11%)

Query: 7   TSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRG------ 60
           T    +       ++ LS + + +     +       S+  +  +  + N++        
Sbjct: 366 TEIPANFCGFTEQVENLSFAHNKL---KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNF 422

Query: 61  -SLPWCLANMTSLRILDVSYNQLTGSIS 87
             L        ++  +++S NQ++    
Sbjct: 423 DPLDPTPFKGINVSSINLSNNQISKFPK 450

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 39.6 bits (93), Expect = 3e-05
 Identities = 8/46 (17%), Positives = 17/46 (36%)

Query: 44  SLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTGSISLS 89
           S   +  L +      G +P  +  +T L +L +  +    +  L 
Sbjct: 79  SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLF 124

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 37.3 bits (87), Expect = 2e-04
 Identities = 10/70 (14%), Positives = 21/70 (30%), Gaps = 1/70 (1%)

Query: 16  SMSSLKYLSLSGSTI-GINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRI 74
           ++  L  + LS ++     +  +    L       +     N      P  +    SL  
Sbjct: 511 TLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQ 570

Query: 75  LDVSYNQLTG 84
           L +  N +  
Sbjct: 571 LQIGSNDIRK 580

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 36.2 bits (84), Expect = 5e-04
 Identities = 11/77 (14%), Positives = 26/77 (33%), Gaps = 10/77 (12%)

Query: 16  SMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRIL 75
           +   L  + L  + +   + +  D    +L +L  + ++ N      P    N ++L+  
Sbjct: 486 NTYLLTSIDLRFNKL---TKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGF 541

Query: 76  ------DVSYNQLTGSI 86
                 D   N+     
Sbjct: 542 GIRNQRDAQGNRTLREW 558

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 35.8 bits (83), Expect = 6e-04
 Identities = 7/86 (8%), Positives = 26/86 (30%), Gaps = 2/86 (2%)

Query: 5   LNTSFLQSIGESMSSLKYLSLSGSTIGINSSMI-LDQGLCSLVHLQELYIASNDLRGSLP 63
           +   + ++  +      +  L    I  +     + +     +   ++   SN++   + 
Sbjct: 141 MRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI-TFVS 199

Query: 64  WCLANMTSLRILDVSYNQLTGSISLS 89
             +  +T LR   +  +         
Sbjct: 200 KAVMRLTKLRQFYMGNSPFVAENICE 225

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.9 bits (112), Expect = 8e-08
 Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 5/83 (6%)

Query: 5   LNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPW 64
           L      S+  S+ +L YL +S +       +  +     L  L+ L +A N  + +   
Sbjct: 408 LKQMSEFSVFLSLRNLIYLDISHTHT----RVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463

Query: 65  C-LANMTSLRILDVSYNQLTGSI 86
                + +L  LD+S  QL    
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLS 486

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.6 bits (111), Expect = 1e-07
 Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 3/71 (4%)

Query: 16  SMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRIL 75
            +  L++L    S +     M       SL +L  L I+    R +       ++SL +L
Sbjct: 394 GLEQLEHLDFQHSNL---KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 450

Query: 76  DVSYNQLTGSI 86
            ++ N    + 
Sbjct: 451 KMAGNSFQENF 461

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.0 bits (107), Expect = 4e-07
 Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 4/74 (5%)

Query: 16  SMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRIL 75
           S   L+ L LS   I      I D    SL HL  L +  N ++       + ++SL+ L
Sbjct: 50  SFPELQVLDLSRCEI----QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105

Query: 76  DVSYNQLTGSISLS 89
                 L    +  
Sbjct: 106 VAVETNLASLENFP 119

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 44.6 bits (106), Expect = 5e-07
 Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 4/82 (4%)

Query: 5   LNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPW 64
              +FL  I   + +L +L LS   +      +      SL  LQ L ++ N+      +
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQL----EQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 512

Query: 65  CLANMTSLRILDVSYNQLTGSI 86
               + SL++LD S N +  S 
Sbjct: 513 PYKCLNSLQVLDYSLNHIMTSK 534

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.1 bits (102), Expect = 2e-06
 Identities = 16/75 (21%), Positives = 34/75 (45%), Gaps = 3/75 (4%)

Query: 15  ESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRI 74
             +SSL+ L ++G++        L      L +L  L ++   L    P    +++SL++
Sbjct: 442 NGLSSLEVLKMAGNSF---QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498

Query: 75  LDVSYNQLTGSISLS 89
           L++S+N      +  
Sbjct: 499 LNMSHNNFFSLDTFP 513

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 42.7 bits (101), Expect = 2e-06
 Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 4/69 (5%)

Query: 16  SMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRIL 75
           S+S L  L L+G+ I      +       L  LQ+L     +L     + + ++ +L+ L
Sbjct: 74  SLSHLSTLILTGNPI----QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129

Query: 76  DVSYNQLTG 84
           +V++N +  
Sbjct: 130 NVAHNLIQS 138

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 42.3 bits (100), Expect = 3e-06
 Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 6/72 (8%)

Query: 17  MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLP-WCLANMTSLRIL 75
            +SLKYL LS      N  + +      L  L+ L    ++L+         ++ +L  L
Sbjct: 372 TTSLKYLDLSF-----NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426

Query: 76  DVSYNQLTGSIS 87
           D+S+     + +
Sbjct: 427 DISHTHTRVAFN 438

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 41.2 bits (97), Expect = 7e-06
 Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 4/71 (5%)

Query: 17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILD 76
            S K L LS + +      +      S   LQ L ++  +++        +++ L  L 
Sbjct: 27 PFSTKNLDLSFNPL----RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLI 82

Query: 77 VSYNQLTGSIS 87
          ++ N +     
Sbjct: 83 LTGNPIQSLAL 93

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 41.2 bits (97), Expect = 8e-06
 Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 5/75 (6%)

Query: 16  SMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRG-SLPWCLANMTSLRI 74
            +SSL+ L    + +    + + +  +  L  L+EL +A N ++   LP   +N+T+L  
Sbjct: 98  GLSSLQKLVAVETNL----ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 153

Query: 75  LDVSYNQLTGSISLS 89
           LD+S N++       
Sbjct: 154 LDLSSNKIQSIYCTD 168

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 39.2 bits (92), Expect = 4e-05
 Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 3/75 (4%)

Query: 16  SMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRIL 75
            + SL++L LS +  G++      Q       L+ L ++ N +   +      +  L  L
Sbjct: 345 DLPSLEFLDLSRN--GLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHL 401

Query: 76  DVSYNQLTGSISLSP 90
           D  ++ L      S 
Sbjct: 402 DFQHSNLKQMSEFSV 416

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 37.7 bits (88), Expect = 1e-04
 Identities = 16/75 (21%), Positives = 35/75 (46%), Gaps = 7/75 (9%)

Query: 16  SMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRI- 74
            + +LK L+++ + I    S  L +   +L +L+ L ++SN ++      L  +  + + 
Sbjct: 122 HLKTLKELNVAHNLI---QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178

Query: 75  ---LDVSYNQLTGSI 86
              LD+S N +    
Sbjct: 179 NLSLDLSLNPMNFIQ 193

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 35.8 bits (83), Expect = 7e-04
 Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 5/76 (6%)

Query: 16  SMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANM-TSLRI 74
           S+SSL+ L++S +        +       L  LQ L  + N +  S    L +  +SL  
Sbjct: 492 SLSSLQVLNMSHNNF----FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF 547

Query: 75  LDVSYNQLTGSISLSP 90
           L+++ N    +     
Sbjct: 548 LNLTQNDFACTCEHQS 563

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.0 bits (107), Expect = 3e-07
 Identities = 11/76 (14%), Positives = 26/76 (34%), Gaps = 3/76 (3%)

Query: 15  ESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRI 74
           +    L+ L L+ + +             +L  L+ L ++ + L  S       + +L+ 
Sbjct: 397 KECPQLELLDLAFTRL---KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQH 453

Query: 75  LDVSYNQLTGSISLSP 90
           L++  N          
Sbjct: 454 LNLQGNHFPKGNIQKT 469

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.9 bits (104), Expect = 1e-06
 Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 4/73 (5%)

Query: 17  MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILD 76
           + +L +L L+   I      I +    S   L  L + +N L       L+   +L+ L 
Sbjct: 56  LINLTFLDLTRCQI----YWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111

Query: 77  VSYNQLTGSISLS 89
                ++    + 
Sbjct: 112 FIQTGISSIDFIP 124

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 42.3 bits (100), Expect = 3e-06
 Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 2/76 (2%)

Query: 15  ESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRI 74
           E++ +L+ L LS     I +S   +  L +L HLQ L ++ N+              L +
Sbjct: 347 ENLENLRELDLSHD--DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLEL 404

Query: 75  LDVSYNQLTGSISLSP 90
           LD+++ +L    + SP
Sbjct: 405 LDLAFTRLKVKDAQSP 420

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 42.3 bits (100), Expect = 4e-06
 Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 4/69 (5%)

Query: 16  SMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRIL 75
           S   L  L L+ + +      + +  L     L+ L+     +       L N  +L  L
Sbjct: 79  SQHRLDTLVLTANPL----IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESL 134

Query: 76  DVSYNQLTG 84
            +  N ++ 
Sbjct: 135 YLGSNHISS 143

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 40.8 bits (96), Expect = 1e-05
 Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 7/83 (8%)

Query: 5   LNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPW 64
           L     QS  +++  LK L+LS S +     +  +Q    L  LQ L +  N        
Sbjct: 412 LKVKDAQSPFQNLHLLKVLNLSHSLL----DISSEQLFDGLPALQHLNLQGNHFPKGNIQ 467

Query: 65  C---LANMTSLRILDVSYNQLTG 84
               L  +  L IL +S+  L+ 
Sbjct: 468 KTNSLQTLGRLEILVLSFCDLSS 490

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 40.8 bits (96), Expect = 1e-05
 Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 4/69 (5%)

Query: 16  SMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRIL 75
              +LK+L    + I    S I    L +   L+ LY+ SN +             L++L
Sbjct: 103 GPKALKHLFFIQTGI----SSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVL 158

Query: 76  DVSYNQLTG 84
           D   N +  
Sbjct: 159 DFQNNAIHY 167

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 40.4 bits (95), Expect = 1e-05
 Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 5/73 (6%)

Query: 15  ESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRI 74
              S L+ L L+           L  GL  L  L++L +++N          +N  SL  
Sbjct: 275 HCFSGLQELDLTA-----THLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTH 329

Query: 75  LDVSYNQLTGSIS 87
           L +  N     + 
Sbjct: 330 LSIKGNTKRLELG 342

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 39.2 bits (92), Expect = 4e-05
 Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 5/75 (6%)

Query: 15  ESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGS--LPWCLANMTSL 72
            +  SL +LS+ G+T       +    L +L +L+EL ++ +D+  S      L N++ L
Sbjct: 322 SNFPSLTHLSIKGNTK---RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHL 378

Query: 73  RILDVSYNQLTGSIS 87
           + L++SYN+     +
Sbjct: 379 QSLNLSYNEPLSLKT 393

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 38.5 bits (90), Expect = 7e-05
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 5/70 (7%)

Query: 17  MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSL-PWCLANMTSLRIL 75
           +S+LK L LS +        +      +   L  L I  N  R  L   CL N+ +LR L
Sbjct: 300 LSTLKKLVLSANKF----ENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL 355

Query: 76  DVSYNQLTGS 85
           D+S++ +  S
Sbjct: 356 DLSHDDIETS 365

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 38.5 bits (90), Expect = 8e-05
 Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 1/70 (1%)

Query: 15  ESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRI 74
           + + +L++L+L G+     +    +  L +L  L+ L ++  DL         ++  +  
Sbjct: 446 DGLPALQHLNLQGNHFPKGNIQKTN-SLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNH 504

Query: 75  LDVSYNQLTG 84
           +D+S+N+LT 
Sbjct: 505 VDLSHNRLTS 514

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 37.3 bits (87), Expect = 2e-04
 Identities = 9/79 (11%), Positives = 25/79 (31%), Gaps = 2/79 (2%)

Query: 5   LNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPW 64
           L   F      ++ SL   +         S  + +      + ++ + +  +        
Sbjct: 215 LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG--LCEMSVESINLQKHYFFNISSN 272

Query: 65  CLANMTSLRILDVSYNQLT 83
                + L+ LD++   L+
Sbjct: 273 TFHCFSGLQELDLTATHLS 291

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 36.1 bits (84), Expect = 5e-04
 Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 5/76 (6%)

Query: 14  GESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLR 73
           G    S++ ++L           I          LQEL + +  L   LP  L  +++L+
Sbjct: 250 GLCEMSVESINLQKHYF----FNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLK 304

Query: 74  ILDVSYNQLTGSISLS 89
            L +S N+      +S
Sbjct: 305 KLVLSANKFENLCQIS 320

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.0 bits (107), Expect = 4e-07
 Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 4/71 (5%)

Query: 17  MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILD 76
            ++L  L L  ++I      I +       +L  L ++ N L  +       + +L+ L 
Sbjct: 96  CTNLTELHLMSNSI----QKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELL 151

Query: 77  VSYNQLTGSIS 87
           +S N++    S
Sbjct: 152 LSNNKIQALKS 162

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.0 bits (107), Expect = 4e-07
 Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 4/71 (5%)

Query: 16  SMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRIL 75
            +  LK L+L  + +    S + D+      +L EL++ SN ++           +L  L
Sbjct: 71  KLPMLKVLNLQHNEL----SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITL 126

Query: 76  DVSYNQLTGSI 86
           D+S+N L+ + 
Sbjct: 127 DLSHNGLSSTK 137

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 44.6 bits (106), Expect = 5e-07
 Identities = 15/84 (17%), Positives = 32/84 (38%)

Query: 7   TSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCL 66
                ++   + +LKYLSLS S   + +         +   L  L +  N +        
Sbjct: 342 PGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAF 401

Query: 67  ANMTSLRILDVSYNQLTGSISLSP 90
           + +  L +LD+  N++   ++   
Sbjct: 402 SWLGHLEVLDLGLNEIGQELTGQE 425

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.5 bits (103), Expect = 1e-06
 Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 3/69 (4%)

Query: 16  SMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRIL 75
            +  L+ L L  + I      +  Q    L ++ E+Y++ N          A + SL+ L
Sbjct: 403 WLGHLEVLDLGLNEI---GQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRL 459

Query: 76  DVSYNQLTG 84
            +    L  
Sbjct: 460 MLRRVALKN 468

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.5 bits (103), Expect = 1e-06
 Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 4/72 (5%)

Query: 16  SMSSLKYLSLSGSTI-GINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRI 74
            + +L+ L LS + I  + S  +    + +   L++L ++SN ++   P C   +  L  
Sbjct: 143 QLENLQELLLSNNKIQALKSEEL---DIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFG 199

Query: 75  LDVSYNQLTGSI 86
           L ++  QL  S+
Sbjct: 200 LFLNNVQLGPSL 211

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.1 bits (102), Expect = 2e-06
 Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 2/76 (2%)

Query: 14  GESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLR 73
             + +S++ LSLS S +   S+           +L  L ++ N+L        A +  L 
Sbjct: 218 ELANTSIRNLSLSNSQLSTTSNTTF--LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLE 275

Query: 74  ILDVSYNQLTGSISLS 89
              + YN +    S S
Sbjct: 276 YFFLEYNNIQHLFSHS 291

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.1 bits (102), Expect = 2e-06
 Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 4/71 (5%)

Query: 17  MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILD 76
            S L  L +  +TI    S +  +    L  L+ L +  N+L        A  T+L  L 
Sbjct: 48  YSQLTSLDVGFNTI----SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103

Query: 77  VSYNQLTGSIS 87
           +  N +    +
Sbjct: 104 LMSNSIQKIKN 114

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 42.7 bits (101), Expect = 3e-06
 Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 4/85 (4%)

Query: 7   TSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQG----LCSLVHLQELYIASNDLRGSL 62
            +    + E +  L+ L L  + +          G    L  L HL  L + SN      
Sbjct: 493 ANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIP 552

Query: 63  PWCLANMTSLRILDVSYNQLTGSIS 87
                ++  L+I+D+  N L    +
Sbjct: 553 VEVFKDLFELKIIDLGLNNLNTLPA 577

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 41.9 bits (99), Expect = 5e-06
 Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 4/72 (5%)

Query: 15  ESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRI 74
           + +S L  L+L  +        +       L  L+ + +  N+L         N  SL+ 
Sbjct: 533 KGLSHLHILNLESNGFDEIPVEVFKD----LFELKIIDLGLNNLNTLPASVFNNQVSLKS 588

Query: 75  LDVSYNQLTGSI 86
           L++  N +T   
Sbjct: 589 LNLQKNLITSVE 600

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 41.9 bits (99), Expect = 5e-06
 Identities = 14/85 (16%), Positives = 28/85 (32%), Gaps = 6/85 (7%)

Query: 5   LNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRG--SL 62
           +           + ++  + LS +        +       +  LQ L +    L+   S 
Sbjct: 417 IGQELTGQEWRGLENIFEIYLSYNKY----LQLTRNSFALVPSLQRLMLRRVALKNVDSS 472

Query: 63  PWCLANMTSLRILDVSYNQLTGSIS 87
           P     + +L ILD+S N +     
Sbjct: 473 PSPFQPLRNLTILDLSNNNIANIND 497

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 41.5 bits (98), Expect = 6e-06
 Identities = 10/72 (13%), Positives = 29/72 (40%), Gaps = 4/72 (5%)

Query: 18 SSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDV 77
          +++  L+L+ + +      +          L  L +  N +    P     +  L++L++
Sbjct: 25 TNITVLNLTHNQL----RRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNL 80

Query: 78 SYNQLTGSISLS 89
           +N+L+     +
Sbjct: 81 QHNELSQLSDKT 92

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 40.8 bits (96), Expect = 1e-05
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 15  ESMSSLKYLSLSGSTI-GINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLR 73
             + SL+ L L    +  ++SS         L +L  L +++N++       L  +  L 
Sbjct: 451 ALVPSLQRLMLRRVALKNVDSSPSP---FQPLRNLTILDLSNNNIANINDDMLEGLEKLE 507

Query: 74  ILDVSYNQLT 83
           ILD+ +N L 
Sbjct: 508 ILDLQHNNLA 517

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 40.4 bits (95), Expect = 2e-05
 Identities = 15/75 (20%), Positives = 35/75 (46%), Gaps = 4/75 (5%)

Query: 14  GESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLR 73
           G   ++L  L LS + +    +++ +     L  L+  ++  N+++      L  + ++R
Sbjct: 244 GLKWTNLTMLDLSYNNL----NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVR 299

Query: 74  ILDVSYNQLTGSISL 88
            L++  +    SISL
Sbjct: 300 YLNLKRSFTKQSISL 314

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 39.6 bits (93), Expect = 3e-05
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 6/74 (8%)

Query: 16  SMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANM--TSLR 73
              +L  L LS + +    S         L +LQEL +++N ++      L     +SL+
Sbjct: 119 KQKNLITLDLSHNGL----SSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLK 174

Query: 74  ILDVSYNQLTGSIS 87
            L++S NQ+     
Sbjct: 175 KLELSSNQIKEFSP 188

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 38.8 bits (91), Expect = 6e-05
 Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 5/75 (6%)

Query: 16  SMSSLKYLSLSGSTIGINSS-----MILDQGLCSLVHLQELYIASNDLRGSLPWCLANMT 70
            + +++YL+L  S    + S      I D     L  L+ L +  ND+ G        + 
Sbjct: 294 GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLI 353

Query: 71  SLRILDVSYNQLTGS 85
           +L+ L +S +  +  
Sbjct: 354 NLKYLSLSNSFTSLR 368

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 38.4 bits (90), Expect = 8e-05
 Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 7/77 (9%)

Query: 16  SMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLA---NMTSL 72
           + SSLK L LS + I             ++  L  L++ +  L  SL   L      TS+
Sbjct: 169 ANSSLKKLELSSNQI----KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSI 224

Query: 73  RILDVSYNQLTGSISLS 89
           R L +S +QL+ + + +
Sbjct: 225 RNLSLSNSQLSTTSNTT 241

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 44.9 bits (106), Expect = 4e-07
 Identities = 16/77 (20%), Positives = 22/77 (28%), Gaps = 13/77 (16%)

Query: 17  MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRG---------SLPWCLA 67
           +  L  + L        +   L   L  L  LQ L IA N              L     
Sbjct: 490 LKDLTDVELYNC----PNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDED 545

Query: 68  NMTSLRILDVSYNQLTG 84
               ++I  + YN L  
Sbjct: 546 TGPKIQIFYMGYNNLEE 562

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 42.9 bits (101), Expect = 2e-06
 Identities = 13/97 (13%), Positives = 34/97 (35%), Gaps = 16/97 (16%)

Query: 7   TSFLQSIGESMSSLKYLSLSGSTI---------------GINSSMILDQGLCSLVHLQEL 51
           T   ++I   ++ L+ +  + S                         +    +L  L ++
Sbjct: 438 TFISKAIQ-RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDV 496

Query: 52  YIASNDLRGSLPWCLANMTSLRILDVSYNQLTGSISL 88
            + +      LP  L ++  L+ L+++ N+   +  L
Sbjct: 497 ELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQL 533

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 42.2 bits (99), Expect = 4e-06
 Identities = 8/69 (11%), Positives = 27/69 (39%), Gaps = 1/69 (1%)

Query: 16  SMSSLKYLSLSGSTI-GINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRI 74
           S+  +  +  S + I     ++         ++   + ++ N+++       A  + +  
Sbjct: 642 SVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPIST 701

Query: 75  LDVSYNQLT 83
           + +S N +T
Sbjct: 702 IILSNNLMT 710

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 41.4 bits (97), Expect = 6e-06
 Identities = 11/48 (22%), Positives = 21/48 (43%)

Query: 42  LCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTGSISLS 89
           L +   +  L +A    +G +P  +  +T L++L    +  T S  L 
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLF 366

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 39.9 bits (93), Expect = 2e-05
 Identities = 11/74 (14%), Positives = 28/74 (37%), Gaps = 4/74 (5%)

Query: 16  SMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRIL 75
           +   L  + L  + +   +S+  D    +L +L  + ++ N    S P    N + L+  
Sbjct: 726 NTYLLTTIDLRFNKL---TSLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAF 781

Query: 76  DVSYNQLTGSISLS 89
            + + +      + 
Sbjct: 782 GIRHQRDAEGNRIL 795

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 39.5 bits (92), Expect = 3e-05
 Identities = 11/75 (14%), Positives = 21/75 (28%), Gaps = 11/75 (14%)

Query: 16  SMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYI------ASNDLRGSLPWCLANM 69
           ++  L  + +S      N          +   L+   I        N +    P  +   
Sbjct: 751 TLPYLSNMDVSY-----NCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTC 805

Query: 70  TSLRILDVSYNQLTG 84
            SL  L +  N +  
Sbjct: 806 PSLIQLQIGSNDIRK 820

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 38.3 bits (89), Expect = 8e-05
 Identities = 7/86 (8%), Positives = 24/86 (27%), Gaps = 8/86 (9%)

Query: 7   TSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCL 66
               +        ++ L  S + +     +       S+  +  +  + N +        
Sbjct: 608 EEIPEDFCAFTDQVEGLGFSHNKL---KYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNIS 664

Query: 67  A-----NMTSLRILDVSYNQLTGSIS 87
                    +   + +SYN++    +
Sbjct: 665 CSMDDYKGINASTVTLSYNEIQKFPT 690

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 37.5 bits (87), Expect = 2e-04
 Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 6/79 (7%)

Query: 7   TSFLQSIGESMSSLKYLSLSGSTI--GINSSMILDQGLCSLVHLQELYIASNDLRGSLPW 64
           +SF      + S LK   +       G         G+ +   L +L I SND+R  +  
Sbjct: 766 SSFPTQPL-NSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDE 823

Query: 65  CLANMTSLRILDVSYNQLT 83
            L     L ILD++ N   
Sbjct: 824 KL--TPQLYILDIADNPNI 840

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 36.8 bits (85), Expect = 3e-04
 Identities = 15/86 (17%), Positives = 32/86 (37%), Gaps = 8/86 (9%)

Query: 7   TSFLQSIGESMSSLKYLSLSGSTIGINS-SMILDQGLCSLVHLQELYIASNDLR------ 59
            S  ++I  SM   K ++ S  T+  N       +   +   +  + +++N +       
Sbjct: 657 GSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENS 716

Query: 60  -GSLPWCLANMTSLRILDVSYNQLTG 84
                    N   L  +D+ +N+LT 
Sbjct: 717 LKPKDGNYKNTYLLTTIDLRFNKLTS 742

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 35.6 bits (82), Expect = 8e-04
 Identities = 14/100 (14%), Positives = 29/100 (29%), Gaps = 22/100 (22%)

Query: 6   NTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRG----- 60
           N        +S  SLK   +   T  I     + + +  L  LQ +Y A++         
Sbjct: 411 NPEMKPIKKDSRISLKDTQIGNLTNRITF---ISKAIQRLTKLQIIYFANSPFTYDNIAV 467

Query: 61  --------------SLPWCLANMTSLRILDVSYNQLTGSI 86
                         +     +N+  L  +++        +
Sbjct: 468 DWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQL 507

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 44.3 bits (105), Expect = 6e-07
 Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 3/72 (4%)

Query: 15  ESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRI 74
             +  L++L    ST+     +       SL  L  L I+  + +         +TSL  
Sbjct: 396 MGLEELQHLDFQHSTL---KRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNT 452

Query: 75  LDVSYNQLTGSI 86
           L ++ N    + 
Sbjct: 453 LKMAGNSFKDNT 464

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 42.3 bits (100), Expect = 3e-06
 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 5/70 (7%)

Query: 16  SMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWC-LANMTSLRI 74
           S+  L YL +S +       +  D     L  L  L +A N  + +      AN T+L  
Sbjct: 422 SLEKLLYLDISYTNT----KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTF 477

Query: 75  LDVSYNQLTG 84
           LD+S  QL  
Sbjct: 478 LDLSKCQLEQ 487

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 42.3 bits (100), Expect = 3e-06
 Identities = 14/78 (17%), Positives = 30/78 (38%), Gaps = 3/78 (3%)

Query: 7   TSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCL 66
                 I   ++SL  L ++G++        L     +  +L  L ++   L        
Sbjct: 437 KIDFDGIFLGLTSLNTLKMAGNSF---KDNTLSNVFANTTNLTFLDLSKCQLEQISWGVF 493

Query: 67  ANMTSLRILDVSYNQLTG 84
             +  L++L++S+N L  
Sbjct: 494 DTLHRLQLLNMSHNNLLF 511

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.9 bits (99), Expect = 4e-06
 Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 4/69 (5%)

Query: 16  SMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRIL 75
            +  L  L L+G+ I              L  L+ L      L     + +  + +L+ L
Sbjct: 78  GLHHLSNLILTGNPI----QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKL 133

Query: 76  DVSYNQLTG 84
           +V++N +  
Sbjct: 134 NVAHNFIHS 142

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 40.8 bits (96), Expect = 1e-05
 Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 4/80 (5%)

Query: 5   LNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPW 64
              + L ++  + ++L +L LS   +      I      +L  LQ L ++ N+L      
Sbjct: 460 FKDNTLSNVFANTTNLTFLDLSKCQL----EQISWGVFDTLHRLQLLNMSHNNLLFLDSS 515

Query: 65  CLANMTSLRILDVSYNQLTG 84
               + SL  LD S+N++  
Sbjct: 516 HYNQLYSLSTLDCSFNRIET 535

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 40.4 bits (95), Expect = 1e-05
 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 4/74 (5%)

Query: 16  SMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRIL 75
           + S L++L LS   I      I D+    L HL  L +  N ++   P   + +TSL  L
Sbjct: 54  NFSELQWLDLSRCEI----ETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENL 109

Query: 76  DVSYNQLTGSISLS 89
                +L    S  
Sbjct: 110 VAVETKLASLESFP 123

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 40.0 bits (94), Expect = 2e-05
 Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 5/70 (7%)

Query: 16  SMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRG-SLPWCLANMTSLRI 74
            ++SL+ L    + +    + +    +  L+ L++L +A N +    LP   +N+T+L  
Sbjct: 102 GLTSLENLVAVETKL----ASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVH 157

Query: 75  LDVSYNQLTG 84
           +D+SYN +  
Sbjct: 158 VDLSYNYIQT 167

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 40.0 bits (94), Expect = 2e-05
 Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 6/73 (8%)

Query: 16  SMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLP-WCLANMTSLRI 74
             +SL++L LS      N ++I+      L  LQ L    + L+         ++  L  
Sbjct: 374 GTNSLRHLDLSF-----NGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY 428

Query: 75  LDVSYNQLTGSIS 87
           LD+SY        
Sbjct: 429 LDISYTNTKIDFD 441

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 37.7 bits (88), Expect = 1e-04
 Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 3/75 (4%)

Query: 16  SMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRIL 75
           ++ SL YL LS +   ++ S            L+ L ++ N     +      +  L+ L
Sbjct: 348 ALPSLSYLDLSRN--ALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHL 404

Query: 76  DVSYNQLTGSISLSP 90
           D  ++ L      S 
Sbjct: 405 DFQHSTLKRVTEFSA 419

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 36.9 bits (86), Expect = 3e-04
 Identities = 11/77 (14%), Positives = 27/77 (35%), Gaps = 4/77 (5%)

Query: 7   TSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCL 66
                 + +++  L+ L++S + +      +       L  L  L  + N +  S     
Sbjct: 486 EQISWGVFDTLHRLQLLNMSHNNL----LFLDSSHYNQLYSLSTLDCSFNRIETSKGILQ 541

Query: 67  ANMTSLRILDVSYNQLT 83
               SL   +++ N + 
Sbjct: 542 HFPKSLAFFNLTNNSVA 558

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 43.7 bits (103), Expect = 1e-06
 Identities = 18/80 (22%), Positives = 36/80 (45%), Gaps = 4/80 (5%)

Query: 10 LQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANM 69
          +  I ++ +  K   ++ S++       L     S  +++EL ++ N L       LA  
Sbjct: 2  IHEIKQNGNRYKIEKVTDSSL----KQALASLRQSAWNVKELDLSGNPLSQISAADLAPF 57

Query: 70 TSLRILDVSYNQLTGSISLS 89
          T L +L++S N L  ++ L 
Sbjct: 58 TKLELLNLSSNVLYETLDLE 77

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 40.6 bits (95), Expect = 1e-05
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)

Query: 7  TSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCL 66
             L S+ +S  ++K L LSG+ +    S I    L     L+ L ++SN L  +L   L
Sbjct: 23 KQALASLRQSAWNVKELDLSGNPL----SQISAADLAPFTKLELLNLSSNVLYETLD--L 76

Query: 67 ANMTSLRILDVSYNQLT 83
           ++++LR LD++ N + 
Sbjct: 77 ESLSTLRTLDLNNNYVQ 93

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 37.9 bits (88), Expect = 1e-04
 Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 5/70 (7%)

Query: 15  ESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRG-SLPWCLANMTSLR 73
                 K + L+ + I    +M+ D        +Q L +  N++   +     A+  +L 
Sbjct: 117 SRGQGKKNIYLANNKI----TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 74  ILDVSYNQLT 83
            L++ YN + 
Sbjct: 173 HLNLQYNFIY 182

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 36.4 bits (84), Expect = 4e-04
 Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 6/67 (8%)

Query: 17  MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILD 76
            + LK L LS      N    +     S   +  + + +N L   +   L    +L   D
Sbjct: 190 FAKLKTLDLSS-----NKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFD 243

Query: 77  VSYNQLT 83
           +  N   
Sbjct: 244 LRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 43.1 bits (102), Expect = 2e-06
 Identities = 18/80 (22%), Positives = 36/80 (45%), Gaps = 4/80 (5%)

Query: 10 LQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANM 69
          +  I ++ +  K   ++ S++       L     S  +++EL ++ N L       LA  
Sbjct: 2  IHEIKQNGNRYKIEKVTDSSL----KQALASLRQSAWNVKELDLSGNPLSQISAADLAPF 57

Query: 70 TSLRILDVSYNQLTGSISLS 89
          T L +L++S N L  ++ L 
Sbjct: 58 TKLELLNLSSNVLYETLDLE 77

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 41.1 bits (97), Expect = 8e-06
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)

Query: 7  TSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCL 66
             L S+ +S  ++K L LSG+ +    S I    L     L+ L ++SN L  +L   L
Sbjct: 23 KQALASLRQSAWNVKELDLSGNPL----SQISAADLAPFTKLELLNLSSNVLYETLD--L 76

Query: 67 ANMTSLRILDVSYNQLT 83
           ++++LR LD++ N + 
Sbjct: 77 ESLSTLRTLDLNNNYVQ 93

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 38.8 bits (91), Expect = 6e-05
 Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 5/70 (7%)

Query: 15  ESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRG-SLPWCLANMTSLR 73
                 K + L+ + I    +M+ D        +Q L +  N++   +     A+  +L 
Sbjct: 117 SRGQGKKNIYLANNKI----TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 74  ILDVSYNQLT 83
            L++ YN + 
Sbjct: 173 HLNLQYNFIY 182

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 38.8 bits (91), Expect = 6e-05
 Identities = 13/70 (18%), Positives = 22/70 (31%), Gaps = 6/70 (8%)

Query: 14  GESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLR 73
               + LK L LS      N    +     S   +  + + +N L   +   L    +L 
Sbjct: 187 QVVFAKLKTLDLSS-----NKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLE 240

Query: 74  ILDVSYNQLT 83
             D+  N   
Sbjct: 241 HFDLRGNGFH 250

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 43.2 bits (101), Expect = 2e-06
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 7/69 (10%)

Query: 15  ESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRI 74
           E +  + +L LS      N    L   L +L  L+ L  + N L  ++   +AN+  L+ 
Sbjct: 460 EQLLLVTHLDLSH-----NRLRALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQE 512

Query: 75  LDVSYNQLT 83
           L +  N+L 
Sbjct: 513 LLLCNNRLQ 521

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 42.8 bits (100), Expect = 3e-06
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 41  GLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLT 83
            L  L+ +  L ++ N LR +LP  LA +  L +L  S N L 
Sbjct: 458 HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE 499

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 35.9 bits (82), Expect = 6e-04
 Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 7/70 (10%)

Query: 15  ESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRG-SLPWCLANMTSLR 73
            ++  L+ L  S + +    ++    G+ +L  LQEL + +N L+  +    L +   L 
Sbjct: 483 AALRCLEVLQASDNAL---ENV---DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLV 536

Query: 74  ILDVSYNQLT 83
           +L++  N L 
Sbjct: 537 LLNLQGNSLC 546

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 42.4 bits (100), Expect = 3e-06
 Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 3/72 (4%)

Query: 16  SMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRIL 75
            +  L++L    S +     M       SL +L  L I+    R +       ++SL +L
Sbjct: 394 GLEQLEHLDFQHSNL---KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 450

Query: 76  DVSYNQLTGSIS 87
            ++ N    +  
Sbjct: 451 KMAGNSFQENFL 462

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 40.9 bits (96), Expect = 1e-05
 Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 3/77 (3%)

Query: 7   TSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCL 66
                 I   +SSL+ L ++G++        L      L +L  L ++   L    P   
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSF---QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 490

Query: 67  ANMTSLRILDVSYNQLT 83
            +++SL++L+++ NQL 
Sbjct: 491 NSLSSLQVLNMASNQLK 507

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 40.1 bits (94), Expect = 2e-05
 Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 4/69 (5%)

Query: 15  ESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRI 74
           +S+S L  L L+G+ I      +       L  LQ+L     +L     + + ++ +L+ 
Sbjct: 73  QSLSHLSTLILTGNPI----QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128

Query: 75  LDVSYNQLT 83
           L+V++N + 
Sbjct: 129 LNVAHNLIQ 137

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 37.8 bits (88), Expect = 1e-04
 Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 3/70 (4%)

Query: 14  GESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLR 73
              + SL++L LS +  G++      Q       L+ L ++ N +  ++      +  L 
Sbjct: 343 EVDLPSLEFLDLSRN--GLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLE 399

Query: 74  ILDVSYNQLT 83
            LD  ++ L 
Sbjct: 400 HLDFQHSNLK 409

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 37.4 bits (87), Expect = 2e-04
 Identities = 12/66 (18%), Positives = 26/66 (39%), Gaps = 4/66 (6%)

Query: 18 SSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDV 77
           S K L LS + +      +      S   LQ L ++  +++        +++ L  L +
Sbjct: 28 FSTKNLDLSFNPL----RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL 83

Query: 78 SYNQLT 83
          + N + 
Sbjct: 84 TGNPIQ 89

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.5 bits (100), Expect = 3e-06
 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 3/70 (4%)

Query: 15  ESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRG-SLPWCLANMTSLR 73
           + +  L  L L     G++ +++ D    +L  L  L ++ N +R   L      + SL+
Sbjct: 94  QGLFHLFELRLYFC--GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLK 151

Query: 74  ILDVSYNQLT 83
            +D S NQ+ 
Sbjct: 152 SIDFSSNQIF 161

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.1 bits (99), Expect = 4e-06
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 17  MSSLKYLSLSGSTI-GINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRIL 75
             SL+ L L  + +     + +       L HLQ LY+  N L    P   +++T+LR L
Sbjct: 450 NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGL 509

Query: 76  DVSYNQLT 83
            ++ N+LT
Sbjct: 510 SLNSNRLT 517

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 40.6 bits (95), Expect = 1e-05
 Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 4/77 (5%)

Query: 7   TSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCL 66
            S    + E++  LK L+L+ + I    + I D+    L +LQ L ++ N L        
Sbjct: 279 FSLNSRVFETLKDLKVLNLAYNKI----NKIADEAFYGLDNLQVLNLSYNLLGELYSSNF 334

Query: 67  ANMTSLRILDVSYNQLT 83
             +  +  +D+  N + 
Sbjct: 335 YGLPKVAYIDLQKNHIA 351

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 40.2 bits (94), Expect = 2e-05
 Identities = 15/78 (19%), Positives = 31/78 (39%), Gaps = 10/78 (12%)

Query: 12  SIGESMSSLKYLSLSGSTIGINSSMILDQGLCS-LVHLQELYIASNDLRG----SLPWC- 65
                +  L+ L L+ +      S        S    L++L++  N L+      L W  
Sbjct: 420 YFLLRVPHLQILILNQNRF----SSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDV 475

Query: 66  LANMTSLRILDVSYNQLT 83
              ++ L++L +++N L 
Sbjct: 476 FEGLSHLQVLYLNHNYLN 493

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 39.4 bits (92), Expect = 3e-05
 Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 4/69 (5%)

Query: 15  ESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRI 74
             + +L+ L+LS + +      +       L  +  + +  N +          +  L+ 
Sbjct: 311 YGLDNLQVLNLSYNLL----GELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQT 366

Query: 75  LDVSYNQLT 83
           LD+  N LT
Sbjct: 367 LDLRDNALT 375

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 39.0 bits (91), Expect = 5e-05
 Identities = 16/75 (21%), Positives = 33/75 (44%), Gaps = 5/75 (6%)

Query: 10 LQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSL-PWCLAN 68
          L  + + +++ + L LS + I      +       L  LQ L + S     ++      N
Sbjct: 16 LTQVPQVLNTTERLLLSFNYI----RTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRN 71

Query: 69 MTSLRILDVSYNQLT 83
          + +LRILD+  +++ 
Sbjct: 72 LPNLRILDLGSSKIY 86

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 38.6 bits (90), Expect = 7e-05
 Identities = 12/72 (16%), Positives = 27/72 (37%), Gaps = 3/72 (4%)

Query: 15  ESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRI 74
             +  L+ L L           I  +   +L +L+ L + S+ +    P     +  L  
Sbjct: 45  PFLEQLQLLELGSQYT---PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101

Query: 75  LDVSYNQLTGSI 86
           L + +  L+ ++
Sbjct: 102 LRLYFCGLSDAV 113

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.1 bits (99), Expect = 4e-06
 Identities = 14/68 (20%), Positives = 34/68 (50%), Gaps = 6/68 (8%)

Query: 17  MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPW-CLANMTSLRIL 75
           +++L  L LS + +    + I  +    + +L+ L ++SN L  +L     +++ +L +L
Sbjct: 63  LTNLHSLLLSHNHL----NFISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVL 117

Query: 76  DVSYNQLT 83
            +  N + 
Sbjct: 118 LLYNNHIV 125

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 36.4 bits (84), Expect = 4e-04
 Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 6/70 (8%)

Query: 15  ESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPW-CLANMTSLR 73
             + +L+YL LS + +      + +     L  L+ L + +N +   +      +M  L+
Sbjct: 85  VPVPNLRYLDLSSNHL----HTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQ 139

Query: 74  ILDVSYNQLT 83
            L +S NQ++
Sbjct: 140 KLYLSQNQIS 149

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 42.0 bits (98), Expect = 5e-06
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 8/69 (11%)

Query: 15  ESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRI 74
           + +  LK LSL  + I    S I   GL  L  L+ LY+ +N +       L+ +T L  
Sbjct: 106 KDLKKLKSLSLEHNGI----SDI--NGLVHLPQLESLYLGNNKITDITV--LSRLTKLDT 157

Query: 75  LDVSYNQLT 83
           L +  NQ++
Sbjct: 158 LSLEDNQIS 166

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 39.7 bits (92), Expect = 3e-05
 Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 8/69 (11%)

Query: 15  ESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRI 74
             ++S+  +  + S I    S+   QG+  L ++ +L++  N L    P  L N+ +L  
Sbjct: 40  NELNSIDQIIANNSDI---KSV---QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGW 91

Query: 75  LDVSYNQLT 83
           L +  N++ 
Sbjct: 92  LFLDENKIK 100

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 38.9 bits (90), Expect = 6e-05
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 8/69 (11%)

Query: 15  ESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRI 74
             +  L+ L L  + I    + I    L  L  L  L +  N +   +   LA +T L+ 
Sbjct: 128 VHLPQLESLYLGNNKI----TDI--TVLSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQN 179

Query: 75  LDVSYNQLT 83
           L +S N ++
Sbjct: 180 LYLSKNHIS 188

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 38.2 bits (88), Expect = 1e-04
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 8/69 (11%)

Query: 15  ESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRI 74
             ++ L  LSL  + I   S +     L  L  LQ LY++ N +   L   LA + +L +
Sbjct: 150 SRLTKLDTLSLEDNQI---SDI---VPLAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDV 201

Query: 75  LDVSYNQLT 83
           L++   +  
Sbjct: 202 LELFSQECL 210

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 36.6 bits (84), Expect = 3e-04
 Identities = 13/69 (18%), Positives = 36/69 (52%), Gaps = 8/69 (11%)

Query: 15  ESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRI 74
           + + ++  L L+G+ +   + +   + L +L +L  L++  N ++  L   L ++  L+ 
Sbjct: 62  QYLPNVTKLFLNGNKL---TDI---KPLTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKS 113

Query: 75  LDVSYNQLT 83
           L + +N ++
Sbjct: 114 LSLEHNGIS 122

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 36.2 bits (83), Expect = 4e-04
 Identities = 8/69 (11%), Positives = 30/69 (43%), Gaps = 8/69 (11%)

Query: 15 ESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRI 74
          ++ +     +L   ++    +         L  + ++   ++D++ S+   +  + ++  
Sbjct: 18 DAFAETIKDNLKKKSVTDAVT------QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTK 69

Query: 75 LDVSYNQLT 83
          L ++ N+LT
Sbjct: 70 LFLNGNKLT 78

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 41.4 bits (98), Expect = 7e-06
 Identities = 16/75 (21%), Positives = 35/75 (46%), Gaps = 7/75 (9%)

Query: 15  ESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRI 74
            +++ +  L+L       N ++     L ++  L  L +  + ++   P  +AN+T L  
Sbjct: 129 ANLTKMYSLNLGA-----NHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYS 181

Query: 75  LDVSYNQLTGSISLS 89
           L ++YNQ+     L+
Sbjct: 182 LSLNYNQIEDISPLA 196

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 38.7 bits (91), Expect = 6e-05
 Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 6/75 (8%)

Query: 15  ESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRI 74
           + ++ LK L++  + I    S I    L +L  L  L++ +N L       +  +T+L  
Sbjct: 262 KDLTKLKMLNVGSNQI----SDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315

Query: 75  LDVSYNQLTGSISLS 89
           L +S N +T    L+
Sbjct: 316 LFLSQNHITDIRPLA 330

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 37.9 bits (89), Expect = 1e-04
 Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 8/75 (10%)

Query: 15  ESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRI 74
            +++ L  LSL+ + I      I    L SL  L       N +    P  +ANMT L  
Sbjct: 174 ANLTDLYSLSLNYNQI----EDI--SPLASLTSLHYFTAYVNQITDITP--VANMTRLNS 225

Query: 75  LDVSYNQLTGSISLS 89
           L +  N++T    L+
Sbjct: 226 LKIGNNKITDLSPLA 240

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 37.5 bits (88), Expect = 1e-04
 Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 8/73 (10%)

Query: 15  ESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRI 74
            ++  L  L +  + I   S+      L +L +L+ELY+  +++    P  LAN+T +  
Sbjct: 85  SNLVKLTNLYIGTNKITDISA------LQNLTNLRELYLNEDNISDISP--LANLTKMYS 136

Query: 75  LDVSYNQLTGSIS 87
           L++  N     +S
Sbjct: 137 LNLGANHNLSDLS 149

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 36.8 bits (86), Expect = 2e-04
 Identities = 12/69 (17%), Positives = 30/69 (43%), Gaps = 6/69 (8%)

Query: 15  ESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRI 74
            ++S L  L L+ + +         + +  L +L  L+++ N +    P  LA+++ +  
Sbjct: 284 NNLSQLNSLFLNNNQL----GNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDS 337

Query: 75  LDVSYNQLT 83
            D +   + 
Sbjct: 338 ADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 36.4 bits (85), Expect = 4e-04
 Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 7/75 (9%)

Query: 15  ESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRI 74
           +++++L+ L L+   I   S       L +L  +  L + +N     L   L+NMT L  
Sbjct: 107 QNLTNLRELYLNEDNISDISP------LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNY 159

Query: 75  LDVSYNQLTGSISLS 89
           L V+ +++     ++
Sbjct: 160 LTVTESKVKDVTPIA 174

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 36.0 bits (84), Expect = 6e-04
 Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 8/75 (10%)

Query: 15  ESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRI 74
            +M+ L  L +  + I   + +     L +L  L  L I +N +   +   + ++T L++
Sbjct: 218 ANMTRLNSLKIGNNKI---TDLS---PLANLSQLTWLEIGTNQIS-DIN-AVKDLTKLKM 269

Query: 75  LDVSYNQLTGSISLS 89
           L+V  NQ++    L+
Sbjct: 270 LNVGSNQISDISVLN 284

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 35.2 bits (82), Expect = 9e-04
 Identities = 22/75 (29%), Positives = 42/75 (56%), Gaps = 8/75 (10%)

Query: 15  ESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRI 74
           E +++L+YL+L+G+ I   + +     L +LV L  LYI +N +       L N+T+LR 
Sbjct: 63  EYLTNLEYLNLNGNQI---TDIS---PLSNLVKLTNLYIGTNKITDISA--LQNLTNLRE 114

Query: 75  LDVSYNQLTGSISLS 89
           L ++ + ++    L+
Sbjct: 115 LYLNEDNISDISPLA 129

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 41.4 bits (97), Expect = 8e-06
 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 9/74 (12%)

Query: 10  LQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANM 69
           L S+    S LK L +SG     N    L      L     L +  N L   LP  L ++
Sbjct: 233 LTSLPVLPSELKELMVSG-----NRLTSLPMLPSGL---LSLSVYRNQLT-RLPESLIHL 283

Query: 70  TSLRILDVSYNQLT 83
           +S   +++  N L+
Sbjct: 284 SSETTVNLEGNPLS 297

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 36.8 bits (85), Expect = 3e-04
 Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 12/74 (16%)

Query: 10  LQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANM 69
           L S+      L+ LS+S      N    L         L +L+  +N L  SLP      
Sbjct: 133 LTSLPVLPPGLQELSVSD-----NQLASLPALPS---ELCKLWAYNNQLT-SLP---MLP 180

Query: 70  TSLRILDVSYNQLT 83
           + L+ L VS NQL 
Sbjct: 181 SGLQELSVSDNQLA 194

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 36.8 bits (85), Expect = 3e-04
 Identities = 17/79 (21%), Positives = 25/79 (31%), Gaps = 12/79 (15%)

Query: 5   LNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPW 64
           +  + L S+      L+ L +SG     N    L      L+ L         L      
Sbjct: 68  IPDNNLTSLPALPPELRTLEVSG-----NQLTSLPVLPPGLLELSIFSNPLTHLPALP-- 120

Query: 65  CLANMTSLRILDVSYNQLT 83
                + L  L +  NQLT
Sbjct: 121 -----SGLCKLWIFGNQLT 134

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 36.4 bits (84), Expect = 4e-04
 Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 12/74 (16%)

Query: 10  LQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANM 69
           L S+    S L+ LS+S      N    L      L    +L+  +N L  SLP   A  
Sbjct: 173 LTSLPMLPSGLQELSVSD-----NQLASLPTLPSEL---YKLWAYNNRLT-SLP---ALP 220

Query: 70  TSLRILDVSYNQLT 83
           + L+ L VS N+LT
Sbjct: 221 SGLKELIVSGNRLT 234

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 41.2 bits (97), Expect = 8e-06
 Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 16  SMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPW-CLANMTSLRI 74
           S+ +L YL +S +       +  +     L  L+ L +A N  + +        + +L  
Sbjct: 124 SLRNLIYLDISHTHT----RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 179

Query: 75  LDVSYNQLT 83
           LD+S  QL 
Sbjct: 180 LDLSQCQLE 188

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 37.3 bits (87), Expect = 2e-04
 Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 4/69 (5%)

Query: 15  ESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRI 74
             + +L +L LS   +      +      SL  LQ L ++ N+      +    + SL++
Sbjct: 172 TELRNLTFLDLSQCQL----EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 227

Query: 75  LDVSYNQLT 83
           LD S N + 
Sbjct: 228 LDYSLNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 36.5 bits (85), Expect = 4e-04
 Identities = 14/81 (17%), Positives = 31/81 (38%), Gaps = 5/81 (6%)

Query: 8   SFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGL-CSLVHLQELYIASNDLRGSLPWCL 66
             + S    +  L++L    S +      + +  +  SL +L  L I+    R +     
Sbjct: 91  ITMSSNFLGLEQLEHLDFQHSNL----KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 146

Query: 67  ANMTSLRILDVSYNQLTGSIS 87
             ++SL +L ++ N    +  
Sbjct: 147 NGLSSLEVLKMAGNSFQENFL 167

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 40.7 bits (96), Expect = 8e-06
 Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 4/73 (5%)

Query: 15  ESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRI 74
             +S+L+ L + G  +    +      L  L  L  L I+ +    S+   +  +  +  
Sbjct: 85  SGLSNLERLRIMGKDV----TSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNS 140

Query: 75  LDVSYNQLTGSIS 87
           +D+SYN     I 
Sbjct: 141 IDLSYNGAITDIM 153

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 38.0 bits (89), Expect = 9e-05
 Identities = 10/75 (13%), Positives = 29/75 (38%), Gaps = 5/75 (6%)

Query: 15  ESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRI 74
             ++SL  L +S S    +        + +L  +  + ++ N     +   L  +  L+ 
Sbjct: 109 SGLTSLTLLDISHSAHDDSI----LTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKS 163

Query: 75  LDVSYNQLTGSISLS 89
           L++ ++ +     + 
Sbjct: 164 LNIQFDGVHDYRGIE 178

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 37.6 bits (88), Expect = 1e-04
 Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 6/72 (8%)

Query: 15  ESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRI 74
           E   ++K L+++       +       +  L +L+ L I   D+       L+ +TSL +
Sbjct: 63  EYAHNIKDLTINNIHATNYN------PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116

Query: 75  LDVSYNQLTGSI 86
           LD+S++    SI
Sbjct: 117 LDISHSAHDDSI 128

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 35.3 bits (82), Expect = 8e-04
 Identities = 16/84 (19%), Positives = 39/84 (46%), Gaps = 9/84 (10%)

Query: 1   MRSALNTSFLQSIGES-MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLR 59
           +   L  S   +I E+ M+SL Y++L+   +   + +    G+    ++++L I +    
Sbjct: 26  LNGLLGQSSTANITEAQMNSLTYITLANINV---TDL---TGIEYAHNIKDLTINNIHAT 79

Query: 60  GSLPWCLANMTSLRILDVSYNQLT 83
              P  ++ +++L  L +    +T
Sbjct: 80  NYNP--ISGLSNLERLRIMGKDVT 101

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 41.0 bits (96), Expect = 1e-05
 Identities = 17/87 (19%), Positives = 29/87 (33%), Gaps = 3/87 (3%)

Query: 6   NTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLR---GSL 62
           + +F         +L  L LS +       +I          LQ L + +  +    G  
Sbjct: 161 SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVC 220

Query: 63  PWCLANMTSLRILDVSYNQLTGSISLS 89
               A    L+ LD+S+N L  +    
Sbjct: 221 SALAAARVQLQGLDLSHNSLRDAAGAP 247

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 39.9 bits (93), Expect = 2e-05
 Identities = 15/84 (17%), Positives = 27/84 (32%)

Query: 7   TSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCL 66
           T+    +  +   L  L+L   +     + + +        L+ L IA           +
Sbjct: 110 TAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV 169

Query: 67  ANMTSLRILDVSYNQLTGSISLSP 90
               +L  LD+S N   G   L  
Sbjct: 170 RVFPALSTLDLSDNPELGERGLIS 193

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 40.9 bits (95), Expect = 1e-05
 Identities = 16/81 (19%), Positives = 27/81 (33%), Gaps = 4/81 (4%)

Query: 3  SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSL 62
                 L  +     +L  L +       +   +  + L  L  L+ L I  + LR   
Sbjct: 17 RDGALDSLHHL-PGAENLTELYIENQQ---HLQHLELRDLRGLGELRNLTIVKSGLRFVA 72

Query: 63 PWCLANMTSLRILDVSYNQLT 83
          P        L  L++S+N L 
Sbjct: 73 PDAFHFTPRLSRLNLSFNALE 93

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 40.1 bits (94), Expect = 2e-05
 Identities = 12/71 (16%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 17  MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILD 76
           ++SL+ L+L    +    + I  + L  L  L  L +   ++     +    +  L++L+
Sbjct: 151 LNSLEQLTLEKCNL----TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLE 206

Query: 77  VSYNQLTGSIS 87
           +S+     +++
Sbjct: 207 ISHWPYLDTMT 217

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 39.3 bits (92), Expect = 4e-05
 Identities = 11/69 (15%), Positives = 29/69 (42%), Gaps = 4/69 (5%)

Query: 15  ESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRI 74
           + + +LK L +  + +      I  +    L  L++L +   +L       L+++  L +
Sbjct: 125 QDLYNLKSLEVGDNDL----VYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIV 180

Query: 75  LDVSYNQLT 83
           L + +  + 
Sbjct: 181 LRLRHLNIN 189

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 38.9 bits (91), Expect = 6e-05
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 4/69 (5%)

Query: 15  ESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRI 74
             +  L++L+LS + I    S I    L  L+ LQE+ +    L    P+    +  LR+
Sbjct: 245 RHLVYLRFLNLSYNPI----STIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRV 300

Query: 75  LDVSYNQLT 83
           L+VS NQLT
Sbjct: 301 LNVSGNQLT 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 38.2 bits (89), Expect = 8e-05
 Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 4/69 (5%)

Query: 15  ESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRI 74
            ++ +L+ L L  + +     +I       L +L +L I+ N +   L +   ++ +L+ 
Sbjct: 77  NNLFNLRTLGLRSNRL----KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKS 132

Query: 75  LDVSYNQLT 83
           L+V  N L 
Sbjct: 133 LEVGDNDLV 141

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 37.0 bits (86), Expect = 3e-04
 Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 4/66 (6%)

Query: 18 SSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDV 77
          +  + L L  + I      +      S  HL+EL +  N +    P    N+ +LR L +
Sbjct: 32 TETRLLDLGKNRI----KTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGL 87

Query: 78 SYNQLT 83
            N+L 
Sbjct: 88 RSNRLK 93

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 40.0 bits (94), Expect = 2e-05
 Identities = 17/67 (25%), Positives = 38/67 (56%), Gaps = 5/67 (7%)

Query: 17  MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILD 76
           +++L  L LS ++I    S + +  L +  HL+EL++ +N L   +P  LA+   ++++ 
Sbjct: 215 LNNLAKLGLSFNSI----SAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVY 269

Query: 77  VSYNQLT 83
           +  N ++
Sbjct: 270 LHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 37.7 bits (88), Expect = 1e-04
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 4/66 (6%)

Query: 18  SSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDV 77
            SL  L L G+ I    + +    L  L +L +L ++ N +       LAN   LR L +
Sbjct: 192 PSLTELHLDGNKI----TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL 247

Query: 78  SYNQLT 83
           + N+L 
Sbjct: 248 NNNKLV 253

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 35.7 bits (83), Expect = 6e-04
 Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 4/66 (6%)

Query: 18  SSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDV 77
                L L  + I    + I D    +L +L  L + +N +    P   A +  L  L +
Sbjct: 52  PDTALLDLQNNKI----TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107

Query: 78  SYNQLT 83
           S NQL 
Sbjct: 108 SKNQLK 113

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 40.1 bits (94), Expect = 2e-05
 Identities = 16/86 (18%), Positives = 30/86 (34%), Gaps = 5/86 (5%)

Query: 3   SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLR--- 59
            AL    +    ++   L+ +    + +   S     +   S   L  + +  N +R   
Sbjct: 144 RALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEG 203

Query: 60  --GSLPWCLANMTSLRILDVSYNQLT 83
               L   LA    L++LD+  N  T
Sbjct: 204 IEHLLLEGLAYCQELKVLDLQDNTFT 229

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 37.8 bits (88), Expect = 1e-04
 Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 6/75 (8%)

Query: 15  ESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANM----- 69
                LK L L  +T     S  L   L S  +L+EL +    L       + +      
Sbjct: 213 AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLE 272

Query: 70  -TSLRILDVSYNQLT 83
              L+ L + YN++ 
Sbjct: 273 NIGLQTLRLQYNEIE 287

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 40.0 bits (94), Expect = 2e-05
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 5/67 (7%)

Query: 17  MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILD 76
            S L  L L  + I     MI +  L  L  L+EL++ +N L   +P  L ++  L+++ 
Sbjct: 216 YSKLYRLGLGHNQI----RMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVY 270

Query: 77  VSYNQLT 83
           +  N +T
Sbjct: 271 LHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 36.9 bits (86), Expect = 2e-04
 Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 4/66 (6%)

Query: 18  SSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDV 77
            +L  L L  + I      I  + L     L  L +  N +R      L+ + +LR L +
Sbjct: 193 ETLNELHLDHNKI----QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHL 248

Query: 78  SYNQLT 83
             N+L+
Sbjct: 249 DNNKLS 254

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 35.8 bits (83), Expect = 7e-04
 Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 4/66 (6%)

Query: 18  SSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDV 77
                L L  + I    S +       L HL  L + +N +        + +  L+ L +
Sbjct: 54  PDTTLLDLQNNDI----SELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109

Query: 78  SYNQLT 83
           S N L 
Sbjct: 110 SKNHLV 115

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 39.7 bits (93), Expect = 3e-05
 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 4/68 (5%)

Query: 16  SMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRIL 75
            +  L  L LSG+ +    S I       L+HLQ+L++  + ++        N+ SL  +
Sbjct: 205 PLIKLDELDLSGNHL----SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEI 260

Query: 76  DVSYNQLT 83
           ++++N LT
Sbjct: 261 NLAHNNLT 268

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 37.8 bits (88), Expect = 1e-04
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 6/69 (8%)

Query: 15  ESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRI 74
           E +S+L+YL+L+   +      I    L  L+ L EL ++ N L    P     +  L+ 
Sbjct: 182 EGLSNLRYLNLAMCNL----REI--PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQK 235

Query: 75  LDVSYNQLT 83
           L +  +Q+ 
Sbjct: 236 LWMIQSQIQ 244

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 35.5 bits (82), Expect = 7e-04
 Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 4/66 (6%)

Query: 18  SSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDV 77
           ++ + L+L  + I     +I       L HL+ L ++ N +R         + +L  L++
Sbjct: 64  TNTRLLNLHENQI----QIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119

Query: 78  SYNQLT 83
             N+LT
Sbjct: 120 FDNRLT 125

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 39.5 bits (93), Expect = 3e-05
 Identities = 14/78 (17%), Positives = 24/78 (30%), Gaps = 7/78 (8%)

Query: 7   TSFLQSIGE-SMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWC 65
            +    + + +      L L    +              L HLQ + I +  L   LP  
Sbjct: 69  KATADLLEDATQPGRVALELRSVPLPQ-----FPDQAFRLSHLQHMTIDAAGLM-ELPDT 122

Query: 66  LANMTSLRILDVSYNQLT 83
           +     L  L ++ N L 
Sbjct: 123 MQQFAGLETLTLARNPLR 140

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 38.8 bits (91), Expect = 5e-05
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 13/80 (16%)

Query: 12  SIGESMSSLKYLSLSG--------STIGINSSMILDQGLCSLVHLQELYIASNDLRGSLP 63
           SI  S++ L+ LS+            +    S         LV+LQ L +    +R SLP
Sbjct: 145 SIA-SLNRLRELSIRACPELTELPEPLA---STDASGEHQGLVNLQSLRLEWTGIR-SLP 199

Query: 64  WCLANMTSLRILDVSYNQLT 83
             +AN+ +L+ L +  + L+
Sbjct: 200 ASIANLQNLKSLKIRNSPLS 219

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 37.2 bits (87), Expect = 2e-04
 Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 8/78 (10%)

Query: 7   TSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCL 66
             F       +S L+++++  + +     M L   +     L+ L +A N LR +LP  +
Sbjct: 94  PQFPDQAFR-LSHLQHMTIDAAGL-----MELPDTMQQFAGLETLTLARNPLR-ALPASI 146

Query: 67  ANMTSLRILDVSY-NQLT 83
           A++  LR L +    +LT
Sbjct: 147 ASLNRLRELSIRACPELT 164

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 36.8 bits (86), Expect = 2e-04
 Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 7/73 (9%)

Query: 12  SIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTS 71
           SI   + +LK L +       +    L   +  L  L+EL +       + P        
Sbjct: 201 SIAN-LQNLKSLKIRN-----SPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAP 254

Query: 72  LRILDVS-YNQLT 83
           L+ L +   + L 
Sbjct: 255 LKRLILKDCSNLL 267

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 36.8 bits (86), Expect = 3e-04
 Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 5/72 (6%)

Query: 12  SIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTS 71
             G   + LK L L       ++ + L   +  L  L++L +        LP  +A + +
Sbjct: 248 IFG-GRAPLKRLILKDC----SNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302

Query: 72  LRILDVSYNQLT 83
             I+ V  +   
Sbjct: 303 NCIILVPPHLQA 314

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 39.2 bits (92), Expect = 4e-05
 Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 4/68 (5%)

Query: 16  SMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRIL 75
            + +L +L L G+ I    S + ++    L  L  L +  N +    P    ++  L  L
Sbjct: 151 DLGNLTHLFLHGNRI----SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206

Query: 76  DVSYNQLT 83
            +  N L+
Sbjct: 207 YLFANNLS 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 37.7 bits (88), Expect = 1e-04
 Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 4/67 (5%)

Query: 17  MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILD 76
           +++L+YL L  + +      + D     L +L  L++  N +          + SL  L 
Sbjct: 128 LAALQYLYLQDNAL----QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLL 183

Query: 77  VSYNQLT 83
           +  N++ 
Sbjct: 184 LHQNRVA 190

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 37.3 bits (87), Expect = 2e-04
 Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 5/69 (7%)

Query: 16  SMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPW-CLANMTSLRI 74
           +  +L  L L  + +    + I       L  L++L ++ N    S+       +  L  
Sbjct: 54  ACRNLTILWLHSNVL----ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109

Query: 75  LDVSYNQLT 83
           L +    L 
Sbjct: 110 LHLDRCGLQ 118

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 39.0 bits (91), Expect = 4e-05
 Identities = 13/68 (19%), Positives = 30/68 (44%), Gaps = 4/68 (5%)

Query: 16  SMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRIL 75
            +  L+ L +SG+        I       L  L++L++ ++ +          + SL  L
Sbjct: 216 PLVGLEELEMSGNHF----PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVEL 271

Query: 76  DVSYNQLT 83
           ++++N L+
Sbjct: 272 NLAHNNLS 279

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 37.4 bits (87), Expect = 2e-04
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 6/69 (8%)

Query: 15  ESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRI 74
           E + +LKYL+L    I      +    L  LV L+EL ++ N      P     ++SL+ 
Sbjct: 193 EGLFNLKYLNLGMCNI----KDM--PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKK 246

Query: 75  LDVSYNQLT 83
           L V  +Q++
Sbjct: 247 LWVMNSQVS 255

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 37.0 bits (86), Expect = 2e-04
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 4/66 (6%)

Query: 18  SSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDV 77
           S+ +YL+L  + I     MI       L HL+ L +  N +R         + SL  L++
Sbjct: 75  SNTRYLNLMENNI----QMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL 130

Query: 78  SYNQLT 83
             N LT
Sbjct: 131 FDNWLT 136

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 38.9 bits (91), Expect = 4e-05
 Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 5/69 (7%)

Query: 15  ESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRI 74
            +   L  + LS + +      I+      +  L+ LYI++N L  +L      + +L++
Sbjct: 245 LNYPGLVEVDLSYNEL----EKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKV 299

Query: 75  LDVSYNQLT 83
           LD+S+N L 
Sbjct: 300 LDLSHNHLL 308

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 38.5 bits (90), Expect = 6e-05
 Identities = 9/78 (11%), Positives = 29/78 (37%), Gaps = 4/78 (5%)

Query: 6   NTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWC 65
              +      ++++ K ++   ST+      +    L S   ++ L +    +     + 
Sbjct: 33  QDVYFGFEDITLNNQKIVTFKNSTM----RKLPAALLDSFRQVELLNLNDLQIEEIDTYA 88

Query: 66  LANMTSLRILDVSYNQLT 83
            A   +++ L + +N + 
Sbjct: 89  FAYAHTIQKLYMGFNAIR 106

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 37.7 bits (88), Expect = 2e-04
 Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 4/68 (5%)

Query: 16  SMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRIL 75
           S   ++ L+L+   I      I          +Q+LY+  N +R   P    N+  L +L
Sbjct: 67  SFRQVELLNLNDLQI----EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122

Query: 76  DVSYNQLT 83
            +  N L+
Sbjct: 123 VLERNDLS 130

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 37.3 bits (87), Expect = 2e-04
 Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 6/69 (8%)

Query: 15  ESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRI 74
             M  L+ L +S      N  + L+     +  L+ L ++ N L   +         L  
Sbjct: 269 VKMQRLERLYISN-----NRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLEN 322

Query: 75  LDVSYNQLT 83
           L + +N + 
Sbjct: 323 LYLDHNSIV 331

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 35.8 bits (83), Expect = 7e-04
 Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 4/72 (5%)

Query: 12  SIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTS 71
            + +++  L  L L  + +    S +      +   L  L +++N+L           TS
Sbjct: 111 HVFQNVPLLTVLVLERNDL----SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS 166

Query: 72  LRILDVSYNQLT 83
           L+ L +S N+LT
Sbjct: 167 LQNLQLSSNRLT 178

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 38.0 bits (87), Expect = 7e-05
 Identities = 8/27 (29%), Positives = 15/27 (55%), Gaps = 1/27 (3%)

Query: 11 QSIGESMSSLK-YLSLSGSTIGINSSM 36
          Q++ +  +SLK Y   S   + I ++M
Sbjct: 20 QALKKLQASLKLYADDSAPALAIKATM 46

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 38.4 bits (89), Expect = 7e-05
 Identities = 14/78 (17%), Positives = 26/78 (33%), Gaps = 10/78 (12%)

Query: 10  LQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQE----LYIASNDLRGSLPWC 65
           L  + E   SL+ L +S      N    L        H +E         N +   +P  
Sbjct: 172 LTFLPELPESLEALDVST-----NLLESLPAVPVRNHHSEETEIFFRCRENRIT-HIPEN 225

Query: 66  LANMTSLRILDVSYNQLT 83
           + ++     + +  N L+
Sbjct: 226 ILSLDPTCTIILEDNPLS 243

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 36.5 bits (84), Expect = 4e-04
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 12/74 (16%)

Query: 10  LQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANM 69
           L ++ E  +SLK+L +       N   +L +    L   + +   +N L   LP      
Sbjct: 112 LSTLPELPASLKHLDVDN-----NQLTMLPELPALL---EYINADNNQLT-MLP---ELP 159

Query: 70  TSLRILDVSYNQLT 83
           TSL +L V  NQLT
Sbjct: 160 TSLEVLSVRNNQLT 173

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 38.4 bits (89), Expect = 7e-05
 Identities = 9/68 (13%), Positives = 28/68 (41%), Gaps = 4/68 (5%)

Query: 16  SMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRIL 75
           ++++ K ++   ST+      +    L S   ++ L +    +     +  A   +++ L
Sbjct: 49  TLNNQKIVTFKNSTM----RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKL 104

Query: 76  DVSYNQLT 83
            + +N + 
Sbjct: 105 YMGFNAIR 112

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 38.0 bits (88), Expect = 1e-04
 Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 5/69 (7%)

Query: 15  ESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRI 74
            +   L  + LS + +      I+      +  L+ LYI++N L  +L      + +L++
Sbjct: 251 LNYPGLVEVDLSYNEL----EKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKV 305

Query: 75  LDVSYNQLT 83
           LD+S+N L 
Sbjct: 306 LDLSHNHLL 314

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 37.2 bits (86), Expect = 2e-04
 Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 6/69 (8%)

Query: 15  ESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRI 74
             M  L+ L +S      N  + L+     +  L+ L ++ N L   +         L  
Sbjct: 275 VKMQRLERLYISN-----NRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLEN 328

Query: 75  LDVSYNQLT 83
           L + +N + 
Sbjct: 329 LYLDHNSIV 337

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 36.8 bits (85), Expect = 3e-04
 Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 4/69 (5%)

Query: 15  ESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRI 74
           +S   ++ L+L+   I      I          +Q+LY+  N +R   P    N+  L +
Sbjct: 72  DSFRQVELLNLNDLQI----EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127

Query: 75  LDVSYNQLT 83
           L +  N L+
Sbjct: 128 LVLERNDLS 136

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 38.2 bits (89), Expect = 9e-05
 Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 3/67 (4%)

Query: 17  MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILD 76
           +++L+ L +         S I       L  L EL I +  LR      L ++  +  L 
Sbjct: 122 LTNLQTLRIGNVET---FSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT 178

Query: 77  VSYNQLT 83
           +  ++  
Sbjct: 179 LHLSESA 185

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 38.2 bits (89), Expect = 1e-04
 Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 9/82 (10%)

Query: 7   TSFLQSIGESMSSLKYLSLSG---STIGINSSMILDQGLCSLVHLQELYIASNDLR--GS 61
                S  + + SL++L LS        + +S            LQ L ++ N LR    
Sbjct: 323 FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGA----WPSLQTLVLSQNHLRSMQK 378

Query: 62  LPWCLANMTSLRILDVSYNQLT 83
               L  + +L  LD+S N   
Sbjct: 379 TGEILLTLKNLTSLDISRNTFH 400

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 37.8 bits (88), Expect = 1e-04
 Identities = 9/82 (10%), Positives = 28/82 (34%), Gaps = 4/82 (4%)

Query: 2   RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGS 61
             + +    +       +++ L +    +       L      L  ++ + + ++ +   
Sbjct: 270 NPSESDVVSELGKVETVTIRRLHIPQFYL----FYDLSTVYSLLEKVKRITVENSKVFLV 325

Query: 62  LPWCLANMTSLRILDVSYNQLT 83
                 ++ SL  LD+S N + 
Sbjct: 326 PCSFSQHLKSLEFLDLSENLMV 347

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 37.0 bits (86), Expect = 2e-04
 Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 4/68 (5%)

Query: 16  SMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRIL 75
           + ++L+ L L  S I    + I      SL  L+ L ++ N L          ++SL+ L
Sbjct: 48  ACANLQVLILKSSRI----NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYL 103

Query: 76  DVSYNQLT 83
           ++  N   
Sbjct: 104 NLMGNPYQ 111

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 38.1 bits (89), Expect = 9e-05
 Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 6/69 (8%)

Query: 16  SMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPW-CLANMTSLRI 74
               L+ + LS + I   +          L  L  L +  N +   LP      + SL++
Sbjct: 54  PYKKLRRIDLSNNQISELAPDAFQG----LRSLNSLVLYGNKIT-ELPKSLFEGLFSLQL 108

Query: 75  LDVSYNQLT 83
           L ++ N++ 
Sbjct: 109 LLLNANKIN 117

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 38.0 bits (89), Expect = 1e-04
 Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 8/75 (10%)

Query: 15  ESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRI 74
             +++L  LSL+G+ +    +      L SL +L +L +A+N +    P  L+ +T L  
Sbjct: 218 GILTNLDELSLNGNQLKDIGT------LASLTNLTDLDLANNQISNLAP--LSGLTKLTE 269

Query: 75  LDVSYNQLTGSISLS 89
           L +  NQ++    L+
Sbjct: 270 LKLGANQISNISPLA 284

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 37.6 bits (88), Expect = 1e-04
 Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 8/75 (10%)

Query: 15  ESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRI 74
             +  +  L      I          G+  L +L ++  ++N L    P  L N+T L  
Sbjct: 43  TDLDQVTTLQADRLGIKSID------GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVD 94

Query: 75  LDVSYNQLTGSISLS 89
           + ++ NQ+     L+
Sbjct: 95  ILMNNNQIADITPLA 109

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 36.9 bits (86), Expect = 3e-04
 Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 8/75 (10%)

Query: 15  ESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRI 74
           E +++L  ++ S + +   + +     L +L  L ++ + +N +    P  LAN+T+L  
Sbjct: 65  EYLNNLTQINFSNNQL---TDIT---PLKNLTKLVDILMNNNQIADITP--LANLTNLTG 116

Query: 75  LDVSYNQLTGSISLS 89
           L +  NQ+T    L 
Sbjct: 117 LTLFNNQITDIDPLK 131

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 36.5 bits (85), Expect = 4e-04
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 8/75 (10%)

Query: 15  ESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRI 74
            ++ +L YL+L  + I   S       + SL  LQ L+  +N +       LAN+T++  
Sbjct: 306 SNLKNLTYLTLYFNNISDIS------PVSSLTKLQRLFFYNNKVSD--VSSLANLTNINW 357

Query: 75  LDVSYNQLTGSISLS 89
           L   +NQ++    L+
Sbjct: 358 LSAGHNQISDLTPLA 372

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 36.1 bits (84), Expect = 5e-04
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 8/75 (10%)

Query: 15  ESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRI 74
             ++ L  L L  + I    S I    L  L  L  L +  N L    P  ++N+ +L  
Sbjct: 262 SGLTKLTELKLGANQI----SNI--SPLAGLTALTNLELNENQLEDISP--ISNLKNLTY 313

Query: 75  LDVSYNQLTGSISLS 89
           L + +N ++    +S
Sbjct: 314 LTLYFNNISDISPVS 328

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 37.3 bits (87), Expect = 1e-04
 Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 6/71 (8%)

Query: 13  IGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSL 72
           + +    L++LS     +   +S+     L  L  L++L ++ N + G L        +L
Sbjct: 37  LTDEFEELEFLSTINVGL---TSI---ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL 90

Query: 73  RILDVSYNQLT 83
             L++S N++ 
Sbjct: 91  THLNLSGNKIK 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 37.3 bits (87), Expect = 1e-04
 Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 6/74 (8%)

Query: 10  LQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANM 69
           ++++G ++     +  S      N    LD G   L  L+ L + +N +          +
Sbjct: 34  IENLGATLDQFDAIDFSD-----NEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQAL 87

Query: 70  TSLRILDVSYNQLT 83
             L  L ++ N L 
Sbjct: 88  PDLTELILTNNSLV 101

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197

 Score = 37.5 bits (87), Expect = 1e-04
 Identities = 17/80 (21%), Positives = 36/80 (45%), Gaps = 5/80 (6%)

Query: 10  LQSIGESMSSLKYLSLSGS-TIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLAN 68
           +  + E  + LK ++++    +       L +  C+  H+++  +A+  +  S    L  
Sbjct: 33  INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIE 92

Query: 69  M----TSLRILDVSYNQLTG 84
           +     SLR+L+V  N LT 
Sbjct: 93  LIETSPSLRVLNVESNFLTP 112

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 37.0 bits (86), Expect = 2e-04
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 4/47 (8%)

Query: 44  SLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTGSISLSP 90
           +L  L  L ++ N L+ SLP     + +L +LDVS+N+LT   SL  
Sbjct: 75  TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT---SLPL 117

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 36.6 bits (85), Expect = 3e-04
 Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 6/79 (7%)

Query: 5   LNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPW 64
            N   ++ +     +L++LSL    +     + +   L  L  L++L ++ N + G L  
Sbjct: 36  SNDGKIEGLTAEFVNLEFLSLINVGL-----ISVS-NLPKLPKLKKLELSENRIFGGLDM 89

Query: 65  CLANMTSLRILDVSYNQLT 83
               + +L  L++S N+L 
Sbjct: 90  LAEKLPNLTHLNLSGNKLK 108

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 36.6 bits (85), Expect = 3e-04
 Identities = 11/72 (15%), Positives = 26/72 (36%), Gaps = 5/72 (6%)

Query: 16  SMSSLKYLSLSGSTIGINSSMILDQGLC-SLVHLQELYIASNDLRGSLPWCLANMTSLRI 74
            +  L++L +   T      +++       L  L  L +  N            + +L +
Sbjct: 52  RLQDLQFLKVEQQTP----GLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV 107

Query: 75  LDVSYNQLTGSI 86
           L ++   L G++
Sbjct: 108 LTLTQCNLDGAV 119

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 36.2 bits (84), Expect = 4e-04
 Identities = 12/67 (17%), Positives = 27/67 (40%), Gaps = 6/67 (8%)

Query: 18  SSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPW-CLANMTSLRILD 76
             L+ ++ S + I        +        + E+ + SN L  ++       + SL+ L 
Sbjct: 57  PQLRKINFSNNKITDIEEGAFEG----ASGVNEILLTSNRLE-NVQHKMFKGLESLKTLM 111

Query: 77  VSYNQLT 83
           +  N++T
Sbjct: 112 LRSNRIT 118

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	90
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.61
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.45
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.41
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.4
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.4
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.39
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.38
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.35
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.34
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.34
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.33
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.31
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.3
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.3
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.29
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.29
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.28
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.26
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.24
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.23
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.23
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.22
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.22
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.22
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.22
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.21
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.2
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.2
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.2
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.2
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.19
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.19
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.19
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.19
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.19
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.19
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.16
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.16
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.15
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.1
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.1
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.1
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.1
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.1
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.1
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.09
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.03
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.03
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.03
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.03
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.03
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.03
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.03
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.02
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.02
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.02
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.01
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.01
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.01
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.01
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.01
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.0
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.0
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.97
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.96
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.95
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.94
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.94
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.93
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.9
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.9
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.87
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.87
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.87
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.87
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.86
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.84
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.82
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.82
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.82
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.81
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.72
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.72
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.71
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.71
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.71
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.7
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.69
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.69
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.68
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.68
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.66
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.66
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.64
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.63
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.63
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.61
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.61
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.61
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.6
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.6
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.55
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.54
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.47
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.47
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.46
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.46
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.42
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.38
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.31
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.27
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.26
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.19
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.15
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.97
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	97.83
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.78
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.71
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.68
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.57
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.55
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.54
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.51
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.48
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.37
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.15
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.09
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.01
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.11
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	95.85
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.3
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	95.27
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	94.86
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	94.4
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	93.87
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	93.52
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	90.23
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	86.14
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	86.11

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.61  E-value=1.6e-15  Score=102.67  Aligned_cols=83  Identities=31%  Similarity=0.416  Sum_probs=78.4

Q ss_pred             CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214            2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ   81 (90)
Q Consensus         2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~   81 (90)
                      +|.+.|.+|..+.. ++.|+.|++++|.  +++.+ |. .+..++.|+.+++++|+++|.+|..+..+++|+.+++++|+
T Consensus       641 ~N~l~g~ip~~l~~-l~~L~~L~Ls~N~--l~g~i-p~-~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~  715 (768)
T 3rgz_A          641 YNMLSGYIPKEIGS-MPYLFILNLGHND--ISGSI-PD-EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN  715 (768)
T ss_dssp             SSCCBSCCCGGGGG-CTTCCEEECCSSC--CCSCC-CG-GGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred             CCcccccCCHHHhc-cccCCEEeCcCCc--cCCCC-Ch-HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence            68899999999999 9999999999999  89888 88 89999999999999999999999999999999999999999


Q ss_pred             CcccCCCC
Q 036214           82 LTGSISLS   89 (90)
Q Consensus        82 l~~~~p~~   89 (90)
                      ++|.+|..
T Consensus       716 l~g~iP~~  723 (768)
T 3rgz_A          716 LSGPIPEM  723 (768)
T ss_dssp             EEEECCSS
T ss_pred             ccccCCCc
Confidence            99999974

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.45  E-value=8.1e-14  Score=94.37  Aligned_cols=82  Identities=24%  Similarity=0.356  Sum_probs=75.8

Q ss_pred             CcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcC
Q 036214            3 SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQL   82 (90)
Q Consensus         3 n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l   82 (90)
                      |.+.|.+|..+.. ++.|+.|++++|.  +++.+ |. .+..++.|+.+++++|.+++.+|..+..+++|+.|++++|++
T Consensus       618 ~~~~g~~~~~~~~-l~~L~~LdLs~N~--l~g~i-p~-~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l  692 (768)
T 3rgz_A          618 RVYGGHTSPTFDN-NGSMMFLDMSYNM--LSGYI-PK-EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL  692 (768)
T ss_dssp             CEEEEECCCSCSS-SBCCCEEECCSSC--CBSCC-CG-GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred             ceecccCchhhhc-cccccEEECcCCc--ccccC-CH-HHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcc
Confidence            5667778888887 9999999999999  99988 88 899999999999999999999999999999999999999999


Q ss_pred             cccCCCC
Q 036214           83 TGSISLS   89 (90)
Q Consensus        83 ~~~~p~~   89 (90)
                      +|.+|..
T Consensus       693 ~g~ip~~  699 (768)
T 3rgz_A          693 DGRIPQA  699 (768)
T ss_dssp             EECCCGG
T ss_pred             cCcCChH
Confidence            9999863

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.41  E-value=2.2e-13  Score=84.04  Aligned_cols=80  Identities=23%  Similarity=0.394  Sum_probs=49.3

Q ss_pred             CcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcC
Q 036214            3 SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQL   82 (90)
Q Consensus         3 n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l   82 (90)
                      |.+.+.+|+.+.. +++|++|++++|.  +.+.. |. .+..+++|+++++++|.+++.+|..+..+++|++|++++|.+
T Consensus        87 n~l~~~~p~~l~~-l~~L~~L~Ls~n~--l~~~~-p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l  161 (313)
T 1ogq_A           87 NNLVGPIPPAIAK-LTQLHYLYITHTN--VSGAI-PD-FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI  161 (313)
T ss_dssp             TTEESCCCGGGGG-CTTCSEEEEEEEC--CEEEC-CG-GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCC
T ss_pred             CcccccCChhHhc-CCCCCEEECcCCe--eCCcC-CH-HHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcc
Confidence            4555556666655 6666666666666  55444 55 566666666666666666656666666666666666666666


Q ss_pred             cccCC
Q 036214           83 TGSIS   87 (90)
Q Consensus        83 ~~~~p   87 (90)
                      .+.+|
T Consensus       162 ~~~~p  166 (313)
T 1ogq_A          162 SGAIP  166 (313)
T ss_dssp             EEECC
T ss_pred             cCcCC
Confidence            65555

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.40  E-value=6.1e-13  Score=77.11  Aligned_cols=81  Identities=17%  Similarity=0.253  Sum_probs=52.3

Q ss_pred             CCcCCccchhH-HHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCC
Q 036214            2 RSALNTSFLQS-IGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYN   80 (90)
Q Consensus         2 ~n~~~~~~p~~-~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n   80 (90)
                      +|.+.+..+.. +.. +++|++|++++|.  +++.. +. .+..++.|+.+++++|++++..+..+..+++|+.|++++|
T Consensus        38 ~n~i~~~~~~~~~~~-l~~L~~L~Ls~N~--l~~~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N  112 (192)
T 1w8a_A           38 DNELGRISSDGLFGR-LPHLVKLELKRNQ--LTGIE-PN-AFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDN  112 (192)
T ss_dssp             SCCCCSBCCSCSGGG-CTTCCEEECCSSC--CCCBC-TT-TTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSS
T ss_pred             CCcCCccCCcccccc-CCCCCEEECCCCC--CCCcC-Hh-HcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC
Confidence            34454443332 445 7777777777777  66654 55 6667777777777777777555555666777777777777


Q ss_pred             cCcccCC
Q 036214           81 QLTGSIS   87 (90)
Q Consensus        81 ~l~~~~p   87 (90)
                      ++++..|
T Consensus       113 ~l~~~~~  119 (192)
T 1w8a_A          113 QISCVMP  119 (192)
T ss_dssp             CCCEECT
T ss_pred             cCCeeCH
Confidence            7776555

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.40  E-value=1.1e-12  Score=75.97  Aligned_cols=80  Identities=19%  Similarity=0.232  Sum_probs=66.3

Q ss_pred             CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214            2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ   81 (90)
Q Consensus         2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~   81 (90)
                      +|.+.+..|..|.. +++|++|++++|.  +++.. +. .+..+++|+.+++++|++++..|..+..+++|+.+++++|.
T Consensus        63 ~N~l~~~~~~~~~~-l~~L~~L~Ls~N~--l~~~~-~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  137 (192)
T 1w8a_A           63 RNQLTGIEPNAFEG-ASHIQELQLGENK--IKEIS-NK-MFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             SSCCCCBCTTTTTT-CTTCCEEECCSCC--CCEEC-SS-SSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred             CCCCCCcCHhHcCC-cccCCEEECCCCc--CCccC-HH-HhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence            57777777777877 8999999999999  77764 55 67888899999999999987778888888999999999998


Q ss_pred             CcccC
Q 036214           82 LTGSI   86 (90)
Q Consensus        82 l~~~~   86 (90)
                      +.+..
T Consensus       138 l~c~c  142 (192)
T 1w8a_A          138 FNCNC  142 (192)
T ss_dssp             BCCSG
T ss_pred             ccCcC
Confidence            87654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.39  E-value=1.9e-12  Score=73.82  Aligned_cols=79  Identities=15%  Similarity=0.145  Sum_probs=60.1

Q ss_pred             CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214            2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ   81 (90)
Q Consensus         2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~   81 (90)
                      +|.+.+..|..|.. +++|++|++++|.  +++.. +. .|..+++|+.+++++|++++..+..+..+++|+.+++++|.
T Consensus        39 ~N~i~~~~~~~~~~-l~~L~~L~Ls~N~--l~~l~-~~-~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  113 (170)
T 3g39_A           39 DNQITKLEPGVFDR-LTQLTRLDLDNNQ--LTVLP-AG-VFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNP  113 (170)
T ss_dssp             SSCCCCCCTTTTTT-CTTCSEEECCSSC--CCCCC-TT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCcCCccChhhhcC-cccCCEEECCCCC--cCccC-hh-hccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCC
Confidence            46677666766777 8888888888888  77653 44 56788888888888888885555567888888888888888


Q ss_pred             Cccc
Q 036214           82 LTGS   85 (90)
Q Consensus        82 l~~~   85 (90)
                      +...
T Consensus       114 ~~c~  117 (170)
T 3g39_A          114 WDCA  117 (170)
T ss_dssp             BCTT
T ss_pred             CCCC
Confidence            7653

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.38  E-value=2.5e-12  Score=75.94  Aligned_cols=78  Identities=17%  Similarity=0.165  Sum_probs=38.4

Q ss_pred             CcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcC
Q 036214            3 SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQL   82 (90)
Q Consensus         3 n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l   82 (90)
                      |.+.+..+..|.. +++|++|++++|.  +.+.. +. .+..+++|+.+++++|++++..|..+..+++|+.|++++|.+
T Consensus        67 N~i~~i~~~~~~~-l~~L~~L~Ls~N~--l~~~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l  141 (220)
T 2v70_A           67 NKITDIEEGAFEG-ASGVNEILLTSNR--LENVQ-HK-MFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQI  141 (220)
T ss_dssp             SCCCEECTTTTTT-CTTCCEEECCSSC--CCCCC-GG-GGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCC
T ss_pred             CcCCEECHHHhCC-CCCCCEEECCCCc--cCccC-Hh-HhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcC
Confidence            3333333333444 5555555555555  44432 33 345555555555555555544445555555555555555555


Q ss_pred             ccc
Q 036214           83 TGS   85 (90)
Q Consensus        83 ~~~   85 (90)
                      ++.
T Consensus       142 ~~~  144 (220)
T 2v70_A          142 TTV  144 (220)
T ss_dssp             CCB
T ss_pred             CEE
Confidence            544

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.35  E-value=4.5e-12  Score=72.60  Aligned_cols=78  Identities=14%  Similarity=0.141  Sum_probs=53.9

Q ss_pred             CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214            2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ   81 (90)
Q Consensus         2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~   81 (90)
                      +|.+.+..|..|.. +++|++|++++|.  +++.. +. .+..+++|+.+++++|++++..+..+..+++|+.+++++|.
T Consensus        42 ~N~l~~~~~~~~~~-l~~L~~L~Ls~N~--l~~i~-~~-~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~  116 (174)
T 2r9u_A           42 NNQITKLEPGVFDH-LVNLQQLYFNSNK--LTAIP-TG-VFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNP  116 (174)
T ss_dssp             SSCCCCCCTTTTTT-CTTCCEEECCSSC--CCCCC-TT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred             CCCccccCHHHhcC-CcCCCEEECCCCC--CCccC-hh-HhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCC
Confidence            45666665666666 7778888888887  66542 33 45677778888888888774444457777788888888877


Q ss_pred             Ccc
Q 036214           82 LTG   84 (90)
Q Consensus        82 l~~   84 (90)
                      +..
T Consensus       117 ~~c  119 (174)
T 2r9u_A          117 WDC  119 (174)
T ss_dssp             BCT
T ss_pred             ccc
Confidence            654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.34  E-value=1.4e-12  Score=80.49  Aligned_cols=82  Identities=18%  Similarity=0.340  Sum_probs=68.3

Q ss_pred             CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCC-CccEEeccCC
Q 036214            2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMT-SLRILDVSYN   80 (90)
Q Consensus         2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~-~L~~l~l~~n   80 (90)
                      +|.+.+.+|+.+.. +++|++|++++|.  +.+.. |. .+..+++|+.+++++|.+++.+|..+..+. +|+.+++++|
T Consensus       110 ~n~l~~~~p~~~~~-l~~L~~L~Ls~N~--l~~~~-p~-~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N  184 (313)
T 1ogq_A          110 HTNVSGAIPDFLSQ-IKTLVTLDFSYNA--LSGTL-PP-SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN  184 (313)
T ss_dssp             EECCEEECCGGGGG-CTTCCEEECCSSE--EESCC-CG-GGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS
T ss_pred             CCeeCCcCCHHHhC-CCCCCEEeCCCCc--cCCcC-Ch-HHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCC
Confidence            46677788888888 8999999999998  77666 77 788888899999999998888888888887 8889999988


Q ss_pred             cCcccCCC
Q 036214           81 QLTGSISL   88 (90)
Q Consensus        81 ~l~~~~p~   88 (90)
                      .+.+.+|.
T Consensus       185 ~l~~~~~~  192 (313)
T 1ogq_A          185 RLTGKIPP  192 (313)
T ss_dssp             EEEEECCG
T ss_pred             eeeccCCh
Confidence            88877664

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.34  E-value=4.1e-12  Score=78.88  Aligned_cols=80  Identities=20%  Similarity=0.169  Sum_probs=56.7

Q ss_pred             CcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcC
Q 036214            3 SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQL   82 (90)
Q Consensus         3 n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l   82 (90)
                      |.+. .+|+.+.. +++|++|++++|.  +.+.+ |. .+..+++|+.+++++|.+.+.+|..+..+++|+.|++++|++
T Consensus       216 N~l~-~l~~~l~~-l~~L~~L~Ls~n~--~~~~~-p~-~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~  289 (328)
T 4fcg_A          216 SPLS-ALGPAIHH-LPKLEELDLRGCT--ALRNY-PP-IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN  289 (328)
T ss_dssp             SCCC-CCCGGGGG-CTTCCEEECTTCT--TCCBC-CC-CTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTT
T ss_pred             CCCC-cCchhhcc-CCCCCEEECcCCc--chhhh-HH-HhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCc
Confidence            4444 34555666 7777777777777  66655 66 677777777777777777767777777777777777877777


Q ss_pred             cccCCC
Q 036214           83 TGSISL   88 (90)
Q Consensus        83 ~~~~p~   88 (90)
                      .+.+|.
T Consensus       290 ~~~iP~  295 (328)
T 4fcg_A          290 LSRLPS  295 (328)
T ss_dssp             CCCCCG
T ss_pred             hhhccH
Confidence            777764

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.33  E-value=7.2e-12  Score=73.98  Aligned_cols=78  Identities=19%  Similarity=0.195  Sum_probs=45.4

Q ss_pred             CcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcC
Q 036214            3 SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQL   82 (90)
Q Consensus         3 n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l   82 (90)
                      |.+.+..|..|.. +++|++|++++|.  ++... +. .+..+++|+.+++++|++++..|..+..+++|+.|++++|.+
T Consensus        66 N~i~~~~~~~~~~-l~~L~~L~Ls~N~--l~~l~-~~-~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  140 (220)
T 2v9t_B           66 NQISELAPDAFQG-LRSLNSLVLYGNK--ITELP-KS-LFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKL  140 (220)
T ss_dssp             SCCCEECTTTTTT-CSSCCEEECCSSC--CCCCC-TT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CcCCCcCHHHhhC-CcCCCEEECCCCc--CCccC-Hh-HccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcC
Confidence            4455444555555 6666666666666  44432 22 355566666666666666655555666666666666666666


Q ss_pred             ccc
Q 036214           83 TGS   85 (90)
Q Consensus        83 ~~~   85 (90)
                      ++.
T Consensus       141 ~~~  143 (220)
T 2v9t_B          141 QTI  143 (220)
T ss_dssp             SCC
T ss_pred             CEE
Confidence            654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.31  E-value=1.8e-11  Score=71.11  Aligned_cols=78  Identities=19%  Similarity=0.305  Sum_probs=62.2

Q ss_pred             CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214            2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ   81 (90)
Q Consensus         2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~   81 (90)
                      +|.+. .+|..+.. +++|+.|++++|.  +++.. +. .|..++.|+.+++++|++++..+..+..+++|+.|++++|.
T Consensus        40 ~n~i~-~ip~~~~~-l~~L~~L~Ls~N~--i~~i~-~~-~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~  113 (193)
T 2wfh_A           40 GNQFT-LVPKELSN-YKHLTLIDLSNNR--ISTLS-NQ-SFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGND  113 (193)
T ss_dssp             SSCCC-SCCGGGGG-CTTCCEEECCSSC--CCCCC-TT-TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCcCc-hhHHHhhc-ccCCCEEECCCCc--CCEeC-Hh-HccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCC
Confidence            34454 56777777 8899999999999  77654 55 68888889999999999986666778888899999999998


Q ss_pred             Cccc
Q 036214           82 LTGS   85 (90)
Q Consensus        82 l~~~   85 (90)
                      +++.
T Consensus       114 l~~~  117 (193)
T 2wfh_A          114 ISVV  117 (193)
T ss_dssp             CCBC
T ss_pred             CCee
Confidence            8864

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.30  E-value=1e-11  Score=73.33  Aligned_cols=82  Identities=16%  Similarity=0.159  Sum_probs=66.2

Q ss_pred             CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214            2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ   81 (90)
Q Consensus         2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~   81 (90)
                      +|.+.+..+..|.. +++|++|++++|.  +.+.. +. .+..+++|+.+++++|+++...+..+..+++|+.|++++|.
T Consensus        41 ~n~i~~i~~~~~~~-l~~L~~L~Ls~N~--i~~~~-~~-~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~  115 (220)
T 2v9t_B           41 QNTIKVIPPGAFSP-YKKLRRIDLSNNQ--ISELA-PD-AFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANK  115 (220)
T ss_dssp             SSCCCEECTTSSTT-CTTCCEEECCSSC--CCEEC-TT-TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCcCCCcCHhHhhC-CCCCCEEECCCCc--CCCcC-HH-HhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCC
Confidence            45666555556666 8999999999999  77765 66 78999999999999999995544567889999999999999


Q ss_pred             CcccCCC
Q 036214           82 LTGSISL   88 (90)
Q Consensus        82 l~~~~p~   88 (90)
                      +.+..|.
T Consensus       116 l~~~~~~  122 (220)
T 2v9t_B          116 INCLRVD  122 (220)
T ss_dssp             CCCCCTT
T ss_pred             CCEeCHH
Confidence            9886553

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.30  E-value=1.2e-11  Score=73.09  Aligned_cols=79  Identities=20%  Similarity=0.230  Sum_probs=69.0

Q ss_pred             CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214            2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ   81 (90)
Q Consensus         2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~   81 (90)
                      +|.+.+..+..|.. +++|++|++++|.  +.+.. +. .+..+++|+.+++++|.+++..|..+..+++|+.+++++|.
T Consensus        90 ~N~l~~~~~~~~~~-l~~L~~L~Ls~N~--l~~~~-~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A           90 SNRLENVQHKMFKG-LESLKTLMLRSNR--ITCVG-ND-SFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             SSCCCCCCGGGGTT-CSSCCEEECTTSC--CCCBC-TT-SSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             CCccCccCHhHhcC-CcCCCEEECCCCc--CCeEC-Hh-HcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence            57777766666777 9999999999999  88765 66 78899999999999999997778999999999999999999


Q ss_pred             Cccc
Q 036214           82 LTGS   85 (90)
Q Consensus        82 l~~~   85 (90)
                      +...
T Consensus       165 l~c~  168 (220)
T 2v70_A          165 FNCN  168 (220)
T ss_dssp             EECS
T ss_pred             CcCC
Confidence            8754

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.29  E-value=1.7e-11  Score=72.67  Aligned_cols=76  Identities=20%  Similarity=0.180  Sum_probs=36.7

Q ss_pred             CcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcC
Q 036214            3 SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQL   82 (90)
Q Consensus         3 n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l   82 (90)
                      |.+.+..|..+.. +++|+.|++++|.  +.... +. .+..+++|+.+++++|++++..+..+..+++|+.|++++|.+
T Consensus        50 n~i~~~~~~~~~~-l~~L~~L~L~~N~--l~~i~-~~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l  124 (229)
T 3e6j_A           50 NQITKLEPGVFDS-LINLKELYLGSNQ--LGALP-VG-VFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL  124 (229)
T ss_dssp             SCCCCCCTTTTTT-CTTCCEEECCSSC--CCCCC-TT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CccCccCHHHhhC-ccCCcEEECCCCC--CCCcC-hh-hcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcc
Confidence            4444444444444 5555555555555  43321 22 344555555555555555533333344445555555555544


Q ss_pred             c
Q 036214           83 T   83 (90)
Q Consensus        83 ~   83 (90)
                      .
T Consensus       125 ~  125 (229)
T 3e6j_A          125 T  125 (229)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.29  E-value=9.7e-12  Score=77.29  Aligned_cols=75  Identities=25%  Similarity=0.285  Sum_probs=61.5

Q ss_pred             cCCccchhHHHhhCCCCcEEeccC-CccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcC
Q 036214            4 ALNTSFLQSIGESMSSLKYLSLSG-STIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQL   82 (90)
Q Consensus         4 ~~~~~~p~~~~~~l~~l~~L~l~~-n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l   82 (90)
                      .+. .+|. +.. +.+|+.|+|++ |.  +.+.. +. .|..+.+|+.|++++|++++..|..|..+++|+.|+|++|++
T Consensus        20 ~l~-~ip~-l~~-~~~L~~L~l~~~n~--l~~~~-~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l   92 (347)
T 2ifg_A           20 ALD-SLHH-LPG-AENLTELYIENQQH--LQHLE-LR-DLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL   92 (347)
T ss_dssp             CCT-TTTT-SCS-CSCCSEEECCSCSS--CCEEC-GG-GSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred             CCC-ccCC-CCC-CCCeeEEEccCCCC--CCCcC-hh-HhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc
Confidence            444 4777 777 88899999986 88  77754 55 788899999999999999977777888999999999999998


Q ss_pred             ccc
Q 036214           83 TGS   85 (90)
Q Consensus        83 ~~~   85 (90)
                      .+.
T Consensus        93 ~~~   95 (347)
T 2ifg_A           93 ESL   95 (347)
T ss_dssp             SCC
T ss_pred             cee
Confidence            864

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.28  E-value=3.4e-12  Score=85.08  Aligned_cols=80  Identities=14%  Similarity=0.295  Sum_probs=67.1

Q ss_pred             CCcCCccchhHHHhhCCCCcEEeccCCccccccc-----------------cchhhhhc--CcccccEEEccCCcCCCcc
Q 036214            2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSS-----------------MILDQGLC--SLVHLQELYIASNDLRGSL   62 (90)
Q Consensus         2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~-----------------~~~~~~~~--~l~~l~~l~l~~n~~~~~~   62 (90)
                      .|.+.+ +|+.+.. +++|++|++++|.  +++.                 + |. .+.  .+++|+++++++|.+.+.+
T Consensus       192 ~n~l~~-ip~~l~~-l~~L~~L~Ls~n~--l~~~~~~~~~~~~~~~~~~~~i-p~-~l~~~~l~~L~~L~L~~n~l~~~~  265 (636)
T 4eco_A          192 SNNITF-VSKAVMR-LTKLRQFYMGNSP--FVAENICEAWENENSEYAQQYK-TE-DLKWDNLKDLTDVEVYNCPNLTKL  265 (636)
T ss_dssp             SCEEEE-ECGGGGG-CTTCCEEEEESCC--CCGGGBSSSCSCTTSHHHHHHT-TS-CCCGGGCTTCCEEEEECCTTCSSC
T ss_pred             cCCCcc-CCHHHhc-ccCCCEEECcCCc--cccccccccccccccchhcccC-ch-hhhhcccCCCCEEEecCCcCCccC
Confidence            457777 8888888 9999999999999  7773                 5 77 777  8888999999999988888


Q ss_pred             hhhhhcCCCccEEeccCCc-Ccc-cCC
Q 036214           63 PWCLANMTSLRILDVSYNQ-LTG-SIS   87 (90)
Q Consensus        63 p~~~~~l~~L~~l~l~~n~-l~~-~~p   87 (90)
                      |..+.++++|+.|++++|. ++| .+|
T Consensus       266 p~~l~~l~~L~~L~Ls~n~~l~~~~lp  292 (636)
T 4eco_A          266 PTFLKALPEMQLINVACNRGISGEQLK  292 (636)
T ss_dssp             CTTTTTCSSCCEEECTTCTTSCHHHHH
T ss_pred             hHHHhcCCCCCEEECcCCCCCccccch
Confidence            8888899999999999987 887 555

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.26  E-value=1.6e-11  Score=80.57  Aligned_cols=79  Identities=22%  Similarity=0.163  Sum_probs=56.3

Q ss_pred             CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214            2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ   81 (90)
Q Consensus         2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~   81 (90)
                      +|.+.+..+..|.. +++|++|++++|.  +++.. +. .|..+++|++|++++|++++..+..|..+++|++|++++|+
T Consensus        61 ~N~i~~l~~~~f~~-l~~L~~L~Ls~N~--i~~i~-~~-~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~  135 (635)
T 4g8a_A           61 FNPLRHLGSYSFFS-FPELQVLDLSRCE--IQTIE-DG-AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN  135 (635)
T ss_dssp             TSCCCEECTTTTTT-CTTCCEEECTTCC--CCEEC-TT-TTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSC
T ss_pred             CCCCCCCCHHHHhC-CCCCCEEECCCCc--CCCcC-hh-HhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCc
Confidence            46666555556666 8888888888888  66543 44 67778888888888888874444567777888888888877


Q ss_pred             Cccc
Q 036214           82 LTGS   85 (90)
Q Consensus        82 l~~~   85 (90)
                      +++.
T Consensus       136 l~~l  139 (635)
T 4g8a_A          136 LASL  139 (635)
T ss_dssp             CCCS
T ss_pred             CCCC
Confidence            7664

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.25  E-value=4e-11  Score=68.37  Aligned_cols=77  Identities=26%  Similarity=0.261  Sum_probs=46.2

Q ss_pred             CcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcC
Q 036214            3 SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQL   82 (90)
Q Consensus         3 n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l   82 (90)
                      |.+.+..+..+.. +++|++|++++|.  +++.. +. .+..+++|+.+++++|.+++..+..+..+++|+.+++++|.+
T Consensus        38 n~l~~~~~~~~~~-l~~L~~L~l~~n~--l~~~~-~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  112 (177)
T 2o6r_A           38 NKLQSLPHGVFDK-LTQLTKLSLSQNQ--IQSLP-DG-VFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQL  112 (177)
T ss_dssp             SCCCCCCTTTTTT-CTTCSEEECCSSC--CCCCC-TT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CcccEeCHHHhcC-cccccEEECCCCc--ceEeC-hh-HccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcc
Confidence            4444433333444 6677777777777  55442 33 456666777777777777644444556666677777776666


Q ss_pred             cc
Q 036214           83 TG   84 (90)
Q Consensus        83 ~~   84 (90)
                      ++
T Consensus       113 ~~  114 (177)
T 2o6r_A          113 KS  114 (177)
T ss_dssp             SC
T ss_pred             eE
Confidence            64

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.24  E-value=2.6e-11  Score=75.28  Aligned_cols=79  Identities=19%  Similarity=0.228  Sum_probs=63.0

Q ss_pred             CcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcC
Q 036214            3 SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQL   82 (90)
Q Consensus         3 n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l   82 (90)
                      |.+. .+|+.+.. +++|++|++++|.  +.+ + +. .+..+++|+.+++++|.+.+.+|..+..+++|+.|++++|.+
T Consensus       193 n~l~-~lp~~l~~-l~~L~~L~L~~N~--l~~-l-~~-~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~  265 (328)
T 4fcg_A          193 TGIR-SLPASIAN-LQNLKSLKIRNSP--LSA-L-GP-AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSN  265 (328)
T ss_dssp             ECCC-CCCGGGGG-CTTCCEEEEESSC--CCC-C-CG-GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTT
T ss_pred             CCcC-cchHhhcC-CCCCCEEEccCCC--CCc-C-ch-hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCc
Confidence            4444 66777777 8888888888888  665 3 66 677888888888888888878888888888888888888888


Q ss_pred             cccCCC
Q 036214           83 TGSISL   88 (90)
Q Consensus        83 ~~~~p~   88 (90)
                      .+.+|.
T Consensus       266 ~~~~p~  271 (328)
T 4fcg_A          266 LLTLPL  271 (328)
T ss_dssp             CCBCCT
T ss_pred             hhhcch
Confidence            887775

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.23  E-value=8.8e-12  Score=84.42  Aligned_cols=77  Identities=29%  Similarity=0.452  Sum_probs=51.1

Q ss_pred             CcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcC
Q 036214            3 SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQL   82 (90)
Q Consensus         3 n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l   82 (90)
                      |.+. .+|+.+.. +++|++|+|++|.  ++ .+ |. .+..+.+|+.|++++|.++ .+|..+..+++|+.|++++|.+
T Consensus       257 N~l~-~lp~~~~~-l~~L~~L~Ls~N~--l~-~l-p~-~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l  328 (727)
T 4b8c_D          257 NSLT-ELPAEIKN-LSNLRVLDLSHNR--LT-SL-PA-ELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPL  328 (727)
T ss_dssp             SCCS-CCCGGGGG-GTTCCEEECTTSC--CS-SC-CS-SGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCC
T ss_pred             CcCc-ccChhhhC-CCCCCEEeCcCCc--CC-cc-Ch-hhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCcc
Confidence            4454 56666666 7777777777777  55 34 55 5666677777777777776 6666677777777777777777


Q ss_pred             cccCC
Q 036214           83 TGSIS   87 (90)
Q Consensus        83 ~~~~p   87 (90)
                      .+.+|
T Consensus       329 ~~~~p  333 (727)
T 4b8c_D          329 EKQFL  333 (727)
T ss_dssp             CSHHH
T ss_pred             CCCCh
Confidence            66544

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.23  E-value=2.9e-11  Score=68.99  Aligned_cols=81  Identities=19%  Similarity=0.170  Sum_probs=64.9

Q ss_pred             CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214            2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ   81 (90)
Q Consensus         2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~   81 (90)
                      +|.+.+..+..+.. +++|++|++++|.  +++.. +. .+..+++|+.+++++|.+++..+..+..+++|+.+++++|.
T Consensus        61 ~n~l~~~~~~~~~~-l~~L~~L~l~~N~--l~~~~-~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A           61 QNQIQSLPDGVFDK-LTKLTILYLHENK--LQSLP-NG-VFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             SSCCCCCCTTTTTT-CTTCCEEECCSSC--CCCCC-TT-TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCcceEeChhHccC-CCccCEEECCCCC--ccccC-HH-HhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence            46666554444566 9999999999999  77754 44 57889999999999999995555556889999999999999


Q ss_pred             CcccCC
Q 036214           82 LTGSIS   87 (90)
Q Consensus        82 l~~~~p   87 (90)
                      +.+..|
T Consensus       136 ~~~~~~  141 (177)
T 2o6r_A          136 WDCSCP  141 (177)
T ss_dssp             BCCCHH
T ss_pred             eeccCc
Confidence            887543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.22  E-value=4.3e-11  Score=69.46  Aligned_cols=78  Identities=22%  Similarity=0.178  Sum_probs=66.1

Q ss_pred             CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214            2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ   81 (90)
Q Consensus         2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~   81 (90)
                      +|.+.+..+..|.. +++|+.|++++|.  +++.. +. .+..+++|+.+++++|.++...+..+..+++|+.+++++|.
T Consensus        63 ~N~i~~i~~~~f~~-l~~L~~L~Ls~N~--l~~i~-~~-~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A           63 NNRISTLSNQSFSN-MTQLLTLILSYNR--LRCIP-PR-TFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             SSCCCCCCTTTTTT-CTTCCEEECCSSC--CCBCC-TT-TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCcCCEeCHhHccC-CCCCCEEECCCCc--cCEeC-HH-HhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence            57777666666777 9999999999999  88765 65 79999999999999999995555578899999999999998


Q ss_pred             Ccc
Q 036214           82 LTG   84 (90)
Q Consensus        82 l~~   84 (90)
                      +..
T Consensus       138 ~~C  140 (193)
T 2wfh_A          138 LYC  140 (193)
T ss_dssp             EEC
T ss_pred             eec
Confidence            753

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.22  E-value=6.2e-11  Score=70.92  Aligned_cols=76  Identities=22%  Similarity=0.205  Sum_probs=33.8

Q ss_pred             CcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcC
Q 036214            3 SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQL   82 (90)
Q Consensus         3 n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l   82 (90)
                      |.+.+..+..+.. +++|++|++++|.  +.+.. +. .+..+++|+.+++++|.+++..+..+..+++|+.|++++|.+
T Consensus        45 n~l~~~~~~~~~~-l~~L~~L~L~~n~--l~~~~-~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  119 (251)
T 3m19_A           45 TGLATLSDATFRG-LTKLTWLNLDYNQ--LQTLS-AG-VFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQL  119 (251)
T ss_dssp             SCCCCCCTTTTTT-CTTCCEEECTTSC--CCCCC-TT-TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCcCccCHhHhcC-cccCCEEECCCCc--CCccC-Hh-HhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcC
Confidence            3333333333444 5555555555555  44432 32 344444455555555544433333344444444444444444


Q ss_pred             c
Q 036214           83 T   83 (90)
Q Consensus        83 ~   83 (90)
                      .
T Consensus       120 ~  120 (251)
T 3m19_A          120 K  120 (251)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.22  E-value=7e-11  Score=70.07  Aligned_cols=78  Identities=26%  Similarity=0.351  Sum_probs=58.4

Q ss_pred             CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214            2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ   81 (90)
Q Consensus         2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~   81 (90)
                      +|.+....+..|.. +++|+.|++++|.  +++.. +. .+..+++|+.+++++|+++ .+|..+..+++|+.|++++|.
T Consensus        73 ~N~l~~i~~~~~~~-l~~L~~L~Ls~N~--l~~l~-~~-~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~  146 (229)
T 3e6j_A           73 SNQLGALPVGVFDS-LTQLTVLDLGTNQ--LTVLP-SA-VFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQ  146 (229)
T ss_dssp             SSCCCCCCTTTTTT-CTTCCEEECCSSC--CCCCC-TT-TTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSC
T ss_pred             CCCCCCcChhhccc-CCCcCEEECCCCc--CCccC-hh-HhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCc
Confidence            45554333333455 8889999999988  76653 44 5778888888888888888 778888888888888888888


Q ss_pred             Cccc
Q 036214           82 LTGS   85 (90)
Q Consensus        82 l~~~   85 (90)
                      +.+.
T Consensus       147 l~~~  150 (229)
T 3e6j_A          147 LKSI  150 (229)
T ss_dssp             CCCC
T ss_pred             CCcc
Confidence            8754

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.22  E-value=7.2e-11  Score=70.66  Aligned_cols=64  Identities=28%  Similarity=0.365  Sum_probs=28.2

Q ss_pred             CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcc
Q 036214           17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTG   84 (90)
Q Consensus        17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~   84 (90)
                      +++|++|++++|.  +++.. +. .+..+++|+.+++++|.+++..+..+..+++|+.|++++|.+.+
T Consensus       106 l~~L~~L~L~~N~--l~~~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  169 (251)
T 3m19_A          106 LTQLDKLYLGGNQ--LKSLP-SG-VFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS  169 (251)
T ss_dssp             CTTCCEEECCSSC--CCCCC-TT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             cCCCCEEEcCCCc--CCCcC-hh-HhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence            4444444444444  33321 22 23444444444554444443333344444455555555554443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.21  E-value=5.5e-11  Score=75.93  Aligned_cols=80  Identities=21%  Similarity=0.184  Sum_probs=43.5

Q ss_pred             CcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcC
Q 036214            3 SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQL   82 (90)
Q Consensus         3 n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l   82 (90)
                      |.+.+..|..+.. +++|++|++++|.  +.+.. +. .+..+++|+.+++++|++++..+..+..+++|+.+++++|++
T Consensus       333 N~l~~~~~~~~~~-l~~L~~L~Ls~N~--l~~~~-~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  407 (455)
T 3v47_A          333 NFLGSIDSRMFEN-LDKLEVLDLSYNH--IRALG-DQ-SFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW  407 (455)
T ss_dssp             SCCCEECGGGGTT-CTTCCEEECCSSC--CCEEC-TT-TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CccCCcChhHhcC-cccCCEEECCCCc--ccccC-hh-hccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCc
Confidence            4444444444444 5566666666665  44443 44 455556666666666666543334445566666666666666


Q ss_pred             cccCC
Q 036214           83 TGSIS   87 (90)
Q Consensus        83 ~~~~p   87 (90)
                      .+..|
T Consensus       408 ~~~~~  412 (455)
T 3v47_A          408 DCSCP  412 (455)
T ss_dssp             CCCTT
T ss_pred             ccCCC
Confidence            65554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.20  E-value=5.6e-11  Score=68.02  Aligned_cols=75  Identities=27%  Similarity=0.251  Sum_probs=62.1

Q ss_pred             CccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCccc
Q 036214            6 NTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTGS   85 (90)
Q Consensus         6 ~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~~   85 (90)
                      .+.+|..+.   +.+++|++++|.  +.+.. +. .+..+++|+.|++++|++++..+..+..+++|+.|++++|++.+.
T Consensus        24 l~~iP~~~~---~~L~~L~Ls~N~--l~~~~-~~-~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l   96 (174)
T 2r9u_A           24 LASVPAGIP---TDKQRLWLNNNQ--ITKLE-PG-VFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSI   96 (174)
T ss_dssp             CSSCCSCCC---TTCSEEECCSSC--CCCCC-TT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             CCccCCCcC---CCCcEEEeCCCC--ccccC-HH-HhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcccee
Confidence            356776553   589999999999  88775 66 789999999999999999955555678999999999999999874


Q ss_pred             CC
Q 036214           86 IS   87 (90)
Q Consensus        86 ~p   87 (90)
                      .+
T Consensus        97 ~~   98 (174)
T 2r9u_A           97 PR   98 (174)
T ss_dssp             CT
T ss_pred             CH
Confidence            33

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.20  E-value=1.5e-11  Score=84.84  Aligned_cols=80  Identities=15%  Similarity=0.264  Sum_probs=65.7

Q ss_pred             CCcCCccchhHHHhhCCCCcEEeccCCcccccc-----------------ccchhhhhc--CcccccEEEccCCcCCCcc
Q 036214            2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINS-----------------SMILDQGLC--SLVHLQELYIASNDLRGSL   62 (90)
Q Consensus         2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~-----------------~~~~~~~~~--~l~~l~~l~l~~n~~~~~~   62 (90)
                      .|.+.+ +|+.+.. +++|+.|++++|.  +++                 .+ |. .+.  .+++|+.+++++|.+.+.+
T Consensus       434 ~N~L~~-IP~~l~~-L~~L~~L~Ls~N~--Lsg~~i~~~~~~~s~n~~~g~i-P~-~l~f~~L~~L~~L~Ls~N~l~~~i  507 (876)
T 4ecn_A          434 TNRITF-ISKAIQR-LTKLQIIYFANSP--FTYDNIAVDWEDANSDYAKQYE-NE-ELSWSNLKDLTDVELYNCPNMTQL  507 (876)
T ss_dssp             SCEEEE-ECGGGGG-CTTCCEEEEESCC--CCGGGBSSSCSCTTSHHHHHHT-TS-CCCGGGCTTCCEEEEESCTTCCSC
T ss_pred             cCcccc-hhHHHhc-CCCCCEEECcCCc--CCCCcccccccccccccccccC-Ch-hhhhccCCCCCEEECcCCCCCccC
Confidence            366666 8888888 9999999999998  777                 25 76 665  8888999999999888888


Q ss_pred             hhhhhcCCCccEEeccCCc-Ccc-cCC
Q 036214           63 PWCLANMTSLRILDVSYNQ-LTG-SIS   87 (90)
Q Consensus        63 p~~~~~l~~L~~l~l~~n~-l~~-~~p   87 (90)
                      |..+..+++|+.|++++|+ ++| .+|
T Consensus       508 P~~l~~L~~L~~L~Ls~N~~lsg~~iP  534 (876)
T 4ecn_A          508 PDFLYDLPELQSLNIACNRGISAAQLK  534 (876)
T ss_dssp             CGGGGGCSSCCEEECTTCTTSCHHHHH
T ss_pred             hHHHhCCCCCCEEECcCCCCcccccch
Confidence            8888899999999999887 887 555

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.20  E-value=9.9e-11  Score=68.19  Aligned_cols=64  Identities=30%  Similarity=0.359  Sum_probs=35.6

Q ss_pred             CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcc
Q 036214           17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTG   84 (90)
Q Consensus        17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~   84 (90)
                      +++|++|++++|.  +++.. +. .+..+++|+.+++++|.+++..+..+..+++|+.|++++|.+.+
T Consensus        75 l~~L~~L~Ls~n~--l~~~~-~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  138 (208)
T 2o6s_A           75 LTSLTYLNLSTNQ--LQSLP-NG-VFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS  138 (208)
T ss_dssp             CTTCCEEECCSSC--CCCCC-TT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCcCEEECCCCc--CCccC-Hh-HhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccce
Confidence            5666666666666  44432 22 34555666666666666654333445555666666666665554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.20  E-value=5.7e-11  Score=65.96  Aligned_cols=69  Identities=23%  Similarity=0.290  Sum_probs=30.6

Q ss_pred             cchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCc
Q 036214            8 SFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLT   83 (90)
Q Consensus         8 ~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~   83 (90)
                      .+|..+.. +++|++|++++|.  +.+.   . .+..+++|+.+++++|.+++.+|..+..+++|+.+++++|.+.
T Consensus        33 ~~~~~~~~-l~~L~~L~l~~n~--l~~~---~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~  101 (149)
T 2je0_A           33 KLEGLTDE-FEELEFLSTINVG--LTSI---A-NLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK  101 (149)
T ss_dssp             BCCSCCTT-CTTCCEEECTTSC--CCCC---T-TCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCC
T ss_pred             HHHHHHhh-cCCCcEEECcCCC--CCCc---h-hhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCC
Confidence            44443333 4455555555554  3321   1 3344444444444444444334444444444444444444443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.19  E-value=6.4e-11  Score=75.63  Aligned_cols=77  Identities=21%  Similarity=0.166  Sum_probs=37.0

Q ss_pred             CcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcC
Q 036214            3 SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQL   82 (90)
Q Consensus         3 n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l   82 (90)
                      |.+.+..|..+.. +++|++|++++|.  +.+.. +. .+..++.|+.+++++|++++..|..+..+++|+.|++++|++
T Consensus       309 n~l~~~~~~~~~~-l~~L~~L~Ls~N~--l~~~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l  383 (455)
T 3v47_A          309 NEINKIDDNAFWG-LTHLLKLNLSQNF--LGSID-SR-MFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL  383 (455)
T ss_dssp             SCCCEECTTTTTT-CTTCCEEECCSSC--CCEEC-GG-GGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             CcccccChhHhcC-cccCCEEECCCCc--cCCcC-hh-HhcCcccCCEEECCCCcccccChhhccccccccEEECCCCcc
Confidence            3333333434444 4555555555555  43332 33 444455555555555555544444555555555555555555


Q ss_pred             cc
Q 036214           83 TG   84 (90)
Q Consensus        83 ~~   84 (90)
                      ++
T Consensus       384 ~~  385 (455)
T 3v47_A          384 KS  385 (455)
T ss_dssp             SC
T ss_pred             cc
Confidence            44

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.19  E-value=7.7e-11  Score=67.14  Aligned_cols=77  Identities=22%  Similarity=0.178  Sum_probs=63.3

Q ss_pred             CcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcC
Q 036214            3 SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQL   82 (90)
Q Consensus         3 n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l   82 (90)
                      |.+. .+|..+.   +.++.|++++|.  +.+.. +. .+..+++|+.+++++|++++..+..+..+++|+.|++++|++
T Consensus        19 n~l~-~ip~~~~---~~l~~L~L~~N~--i~~~~-~~-~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l   90 (170)
T 3g39_A           19 KSLA-SVPTGIP---TTTQVLYLYDNQ--ITKLE-PG-VFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL   90 (170)
T ss_dssp             SCCS-SCCSCCC---TTCSEEECCSSC--CCCCC-TT-TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCcC-ccCccCC---CCCcEEEcCCCc--CCccC-hh-hhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCcc
Confidence            4444 4666543   589999999999  88875 66 789999999999999999966666778999999999999999


Q ss_pred             cccCC
Q 036214           83 TGSIS   87 (90)
Q Consensus        83 ~~~~p   87 (90)
                      ++..+
T Consensus        91 ~~~~~   95 (170)
T 3g39_A           91 KSIPR   95 (170)
T ss_dssp             CCCCT
T ss_pred             CEeCH
Confidence            87544

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.19  E-value=1.1e-10  Score=70.69  Aligned_cols=78  Identities=23%  Similarity=0.255  Sum_probs=38.4

Q ss_pred             CcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcC
Q 036214            3 SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQL   82 (90)
Q Consensus         3 n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l   82 (90)
                      |.+.+..+..+.. +++|++|++++|.  +.+.. +. .+..+++|+.+++++|.+++..+..+..+++|+.|++++|.+
T Consensus       119 n~l~~~~~~~~~~-l~~L~~L~L~~n~--l~~~~-~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  193 (272)
T 3rfs_A          119 NQLQSLPDGVFDK-LTNLTYLNLAHNQ--LQSLP-KG-VFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL  193 (272)
T ss_dssp             SCCCCCCTTTTTT-CTTCCEEECCSSC--CCCCC-TT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CcCCccCHHHhcc-CCCCCEEECCCCc--cCccC-HH-HhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence            3444333333444 5555555555555  44432 22 344555555555555555543334445555555555555555


Q ss_pred             ccc
Q 036214           83 TGS   85 (90)
Q Consensus        83 ~~~   85 (90)
                      .+.
T Consensus       194 ~~~  196 (272)
T 3rfs_A          194 KSV  196 (272)
T ss_dssp             SCC
T ss_pred             Ccc
Confidence            543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.19  E-value=1.3e-10  Score=67.75  Aligned_cols=81  Identities=23%  Similarity=0.240  Sum_probs=62.9

Q ss_pred             CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214            2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ   81 (90)
Q Consensus         2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~   81 (90)
                      +|.+.+..+..+.. +++|++|++++|.  +.+.. +. .+..+++|+++++++|.+++..+..+..+++|+.|++++|.
T Consensus        37 ~n~l~~~~~~~~~~-l~~L~~L~l~~n~--l~~~~-~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~  111 (208)
T 2o6s_A           37 TNSLKSLPNGVFDE-LTSLTQLYLGGNK--LQSLP-NG-VFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQ  111 (208)
T ss_dssp             SSCCCCCCTTTTTT-CTTCSEEECCSSC--CCCCC-TT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCccCcCChhhhcc-cccCcEEECCCCc--cCccC-hh-hcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCc
Confidence            45666544444556 8999999999999  77653 44 57888999999999999985555667889999999999999


Q ss_pred             CcccCC
Q 036214           82 LTGSIS   87 (90)
Q Consensus        82 l~~~~p   87 (90)
                      +.+..+
T Consensus       112 l~~~~~  117 (208)
T 2o6s_A          112 LQSLPD  117 (208)
T ss_dssp             CCCCCT
T ss_pred             CcccCH
Confidence            886543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.19  E-value=3.4e-11  Score=79.05  Aligned_cols=76  Identities=24%  Similarity=0.277  Sum_probs=57.2

Q ss_pred             cchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcccCC
Q 036214            8 SFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTGSIS   87 (90)
Q Consensus         8 ~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~~~p   87 (90)
                      ..|..+.. +++|++|++++|.  +.+.. |. .|..+++|+.+++++|++++..+..+..+++|+.|++++|++++..|
T Consensus       485 ~~~~~~~~-l~~L~~L~Ls~N~--L~~l~-~~-~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~  559 (635)
T 4g8a_A          485 FLPDIFTE-LRNLTFLDLSQCQ--LEQLS-PT-AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK  559 (635)
T ss_dssp             EECSCCTT-CTTCCEEECTTSC--CCEEC-TT-TTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCS
T ss_pred             cCchhhhh-ccccCEEECCCCc--cCCcC-hH-HHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCH
Confidence            34455555 7888888888888  77655 55 67788888888888888886666777888888888888888887655


Q ss_pred             C
Q 036214           88 L   88 (90)
Q Consensus        88 ~   88 (90)
                      .
T Consensus       560 ~  560 (635)
T 4g8a_A          560 Q  560 (635)
T ss_dssp             S
T ss_pred             H
Confidence            4

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.19  E-value=1.2e-10  Score=70.48  Aligned_cols=64  Identities=31%  Similarity=0.343  Sum_probs=30.7

Q ss_pred             CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcc
Q 036214           17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTG   84 (90)
Q Consensus        17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~   84 (90)
                      +++|++|++++|.  +.+.. +. .+..+++|+.+++++|.+++..+..+..+++|+.|++++|.+.+
T Consensus       108 l~~L~~L~L~~n~--l~~~~-~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  171 (272)
T 3rfs_A          108 LTNLKELVLVENQ--LQSLP-DG-VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS  171 (272)
T ss_dssp             CTTCCEEECTTSC--CCCCC-TT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             CcCCCEEECCCCc--CCccC-HH-HhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc
Confidence            5555555555555  44332 22 34445555555555555553333334445555555555555543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.16  E-value=8.7e-11  Score=72.98  Aligned_cols=76  Identities=20%  Similarity=0.163  Sum_probs=63.4

Q ss_pred             CcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcC
Q 036214            3 SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQL   82 (90)
Q Consensus         3 n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l   82 (90)
                      |.+.+..+..|.. +++|+.|+|++|.  +++.. +. .|..+++|+.|+|++|++++..+..+..+. |+.|++.+|.+
T Consensus        42 n~l~~~~~~~~~~-l~~L~~L~l~~N~--l~~~~-~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~  115 (347)
T 2ifg_A           42 QHLQHLELRDLRG-LGELRNLTIVKSG--LRFVA-PD-AFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPL  115 (347)
T ss_dssp             SSCCEECGGGSCS-CCCCSEEECCSSC--CCEEC-TT-GGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCC
T ss_pred             CCCCCcChhHhcc-ccCCCEEECCCCc--cceeC-HH-HhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCc
Confidence            7777776677777 9999999999999  88875 66 789999999999999999955445555555 99999999988


Q ss_pred             cc
Q 036214           83 TG   84 (90)
Q Consensus        83 ~~   84 (90)
                      ..
T Consensus       116 ~c  117 (347)
T 2ifg_A          116 HC  117 (347)
T ss_dssp             CC
T ss_pred             cC
Confidence            63

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.16  E-value=2e-10  Score=76.06  Aligned_cols=78  Identities=23%  Similarity=0.322  Sum_probs=53.6

Q ss_pred             CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcc-hhhhhcCCCccEEeccCC
Q 036214            2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSL-PWCLANMTSLRILDVSYN   80 (90)
Q Consensus         2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~-p~~~~~l~~L~~l~l~~n   80 (90)
                      +|.+. .+|..+.. +++|+.|++++|.  +++ + |  .+..+++|+.|++++|++++.. |..+..+++|+.|++++|
T Consensus       472 ~N~l~-~lp~~~~~-l~~L~~L~Ls~N~--l~~-l-p--~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N  543 (567)
T 1dce_A          472 HNRLR-ALPPALAA-LRCLEVLQASDNA--LEN-V-D--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN  543 (567)
T ss_dssp             SSCCC-CCCGGGGG-CTTCCEEECCSSC--CCC-C-G--GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTS
T ss_pred             ccccc-ccchhhhc-CCCCCEEECCCCC--CCC-C-c--ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCC
Confidence            34555 56666666 7777777777777  655 2 3  4667777777777777777544 777777777777777777


Q ss_pred             cCcccCC
Q 036214           81 QLTGSIS   87 (90)
Q Consensus        81 ~l~~~~p   87 (90)
                      .+++..|
T Consensus       544 ~l~~~~~  550 (567)
T 1dce_A          544 SLCQEEG  550 (567)
T ss_dssp             GGGGSSS
T ss_pred             cCCCCcc
Confidence            7776544

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.15  E-value=7.8e-11  Score=66.59  Aligned_cols=71  Identities=25%  Similarity=0.310  Sum_probs=36.5

Q ss_pred             ccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcc
Q 036214            7 TSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTG   84 (90)
Q Consensus         7 ~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~   84 (90)
                      +.+|..+.. +++|++|++++|.  +.+.   . .+..+++|+.+++++|++++.+|..+..+++|+.|++++|.+.+
T Consensus        39 ~~i~~~~~~-l~~L~~L~l~~n~--l~~~---~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  109 (168)
T 2ell_A           39 GKIEGLTAE-FVNLEFLSLINVG--LISV---S-NLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD  109 (168)
T ss_dssp             TBCSSCCGG-GGGCCEEEEESSC--CCCC---S-SCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCS
T ss_pred             hhHHHHHHh-CCCCCEEeCcCCC--CCCh---h-hhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCc
Confidence            345544444 5555555555555  4432   1 34455555555555555554344444445555555555555543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.15  E-value=1.2e-10  Score=64.67  Aligned_cols=78  Identities=18%  Similarity=0.195  Sum_probs=61.9

Q ss_pred             CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCc-chhhhhcCCCccEEeccCC
Q 036214            2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGS-LPWCLANMTSLRILDVSYN   80 (90)
Q Consensus         2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~-~p~~~~~l~~L~~l~l~~n   80 (90)
                      +|.+.+.  +.+.. +++|++|++++|.  +.+.. +. .+..+++|+.+++++|.+++. .+..+..+++|+.+++++|
T Consensus        51 ~n~l~~~--~~~~~-l~~L~~L~Ls~n~--i~~~~-~~-~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N  123 (149)
T 2je0_A           51 NVGLTSI--ANLPK-LNKLKKLELSDNR--VSGGL-EV-LAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC  123 (149)
T ss_dssp             TSCCCCC--TTCCC-CTTCCEEECCSSC--CCSCT-HH-HHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTC
T ss_pred             CCCCCCc--hhhhc-CCCCCEEECCCCc--ccchH-HH-HhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCC
Confidence            3555544  55666 8899999999999  77755 66 677789999999999999842 3377889999999999999


Q ss_pred             cCcccC
Q 036214           81 QLTGSI   86 (90)
Q Consensus        81 ~l~~~~   86 (90)
                      .+++..
T Consensus       124 ~l~~~~  129 (149)
T 2je0_A          124 EVTNLN  129 (149)
T ss_dssp             GGGGST
T ss_pred             cccchH
Confidence            988753

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.14  E-value=1.3e-10  Score=75.63  Aligned_cols=78  Identities=22%  Similarity=0.203  Sum_probs=58.7

Q ss_pred             CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214            2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ   81 (90)
Q Consensus         2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~   81 (90)
                      +|.+.+..|..+.. +++|++|++++|.  +.+.. +. .+..+++|+++++++|.+++..+..+..+++|++|++++|.
T Consensus        35 ~n~l~~~~~~~~~~-l~~L~~L~Ls~n~--i~~~~-~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~  109 (549)
T 2z81_A           35 FNKITYIGHGDLRA-CANLQVLILKSSR--INTIE-GD-AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP  109 (549)
T ss_dssp             SSCCCEECSSTTSS-CTTCCEEECTTSC--CCEEC-TT-TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCC
T ss_pred             CCccCccChhhhhc-CCcccEEECCCCC--cCccC-hh-hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCc
Confidence            45666666666766 8888888888888  66654 55 67788888888888888886666668888888888888887


Q ss_pred             Ccc
Q 036214           82 LTG   84 (90)
Q Consensus        82 l~~   84 (90)
                      +.+
T Consensus       110 l~~  112 (549)
T 2z81_A          110 YQT  112 (549)
T ss_dssp             CSS
T ss_pred             ccc
Confidence            765

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.14  E-value=1e-10  Score=71.53  Aligned_cols=74  Identities=24%  Similarity=0.304  Sum_probs=38.5

Q ss_pred             chhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcccCC
Q 036214            9 FLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTGSIS   87 (90)
Q Consensus         9 ~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~~~p   87 (90)
                      +|..+.. +++|+.|++++|.  +.+.. +. .+..+++|+.+++++|.+++..+..+..+++|+.+++++|.+.+..|
T Consensus       167 ~~~~~~~-l~~L~~L~Ls~n~--l~~~~-~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  240 (306)
T 2z66_A          167 LPDIFTE-LRNLTFLDLSQCQ--LEQLS-PT-AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK  240 (306)
T ss_dssp             ECSCCTT-CTTCCEEECTTSC--CCEEC-TT-TTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSS
T ss_pred             chhHHhh-CcCCCEEECCCCC--cCCcC-HH-HhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCH
Confidence            3344444 5555555555555  44433 33 45555555555555555554333445555556666666665555443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.12  E-value=1.4e-10  Score=72.68  Aligned_cols=77  Identities=22%  Similarity=0.214  Sum_probs=35.8

Q ss_pred             CcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcC
Q 036214            3 SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQL   82 (90)
Q Consensus         3 n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l   82 (90)
                      |.+.+..+..|.. +++|++|++++|.  +.... +. .+..+.+|+.|++++|.++...+..+..+++|+.|++++|.+
T Consensus        74 N~i~~i~~~~~~~-l~~L~~L~Ls~N~--l~~~~-~~-~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l  148 (361)
T 2xot_A           74 NHLNFISSEAFVP-VPNLRYLDLSSNH--LHTLD-EF-LFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI  148 (361)
T ss_dssp             SCCCEECTTTTTT-CTTCCEEECCSSC--CCEEC-TT-TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             CcCCccChhhccC-CCCCCEEECCCCc--CCcCC-HH-HhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcC
Confidence            3333333333444 5555555555555  44332 22 344455555555555555433344445555555555555544


Q ss_pred             cc
Q 036214           83 TG   84 (90)
Q Consensus        83 ~~   84 (90)
                      .+
T Consensus       149 ~~  150 (361)
T 2xot_A          149 SR  150 (361)
T ss_dssp             CS
T ss_pred             Ce
Confidence            43

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.12  E-value=2.7e-10  Score=69.11  Aligned_cols=43  Identities=19%  Similarity=0.263  Sum_probs=17.0

Q ss_pred             hcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcc
Q 036214           42 LCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTG   84 (90)
Q Consensus        42 ~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~   84 (90)
                      +..+++|+.+++++|++++..+..+..+++|+.+++++|.+.+
T Consensus       149 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  191 (285)
T 1ozn_A          149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH  191 (285)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             hccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence            3334444444444444442222233334444444444444433

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.12  E-value=1.7e-10  Score=75.94  Aligned_cols=77  Identities=25%  Similarity=0.287  Sum_probs=43.0

Q ss_pred             CcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcC
Q 036214            3 SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQL   82 (90)
Q Consensus         3 n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l   82 (90)
                      |.+.+..+..|.. +++|++|++++|.  +.+.. +. .+..+++|+.+++++|.+++..|..+..+++|++|++++|.+
T Consensus        42 n~l~~~~~~~~~~-l~~L~~L~Ls~n~--l~~i~-~~-~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l  116 (606)
T 3vq2_A           42 NPLKILKSYSFSN-FSELQWLDLSRCE--IETIE-DK-AWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL  116 (606)
T ss_dssp             SCCCEECTTTTTT-CTTCCEEECTTCC--CCEEC-TT-TTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCC
T ss_pred             CCcCEeChhhccC-CccCcEEeCCCCc--ccccC-HH-HhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCcc
Confidence            4444444444555 6666666666666  55443 44 455566666666666666544455555566666666665555


Q ss_pred             cc
Q 036214           83 TG   84 (90)
Q Consensus        83 ~~   84 (90)
                      .+
T Consensus       117 ~~  118 (606)
T 3vq2_A          117 AS  118 (606)
T ss_dssp             CC
T ss_pred             cc
Confidence            44

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.12  E-value=2.2e-10  Score=75.89  Aligned_cols=77  Identities=22%  Similarity=0.281  Sum_probs=66.2

Q ss_pred             CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214            2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ   81 (90)
Q Consensus         2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~   81 (90)
                      +|.+.+ +|. +.. +++|+.|++++|.  ++ .+ |. .+..+++|+.|++++|.++ .+| .+..+++|+.|++++|.
T Consensus       450 ~n~l~~-lp~-~~~-l~~L~~L~Ls~N~--l~-~l-p~-~~~~l~~L~~L~Ls~N~l~-~lp-~l~~l~~L~~L~Ls~N~  519 (567)
T 1dce_A          450 HKDLTV-LCH-LEQ-LLLVTHLDLSHNR--LR-AL-PP-ALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNR  519 (567)
T ss_dssp             TSCCSS-CCC-GGG-GTTCCEEECCSSC--CC-CC-CG-GGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSSC
T ss_pred             CCCCCC-CcC-ccc-cccCcEeecCccc--cc-cc-ch-hhhcCCCCCEEECCCCCCC-CCc-ccCCCCCCcEEECCCCC
Confidence            466665 665 777 9999999999999  76 45 77 8999999999999999999 477 79999999999999999


Q ss_pred             CcccC-CC
Q 036214           82 LTGSI-SL   88 (90)
Q Consensus        82 l~~~~-p~   88 (90)
                      +++.. |.
T Consensus       520 l~~~~~p~  527 (567)
T 1dce_A          520 LQQSAAIQ  527 (567)
T ss_dssp             CCSSSTTG
T ss_pred             CCCCCCcH
Confidence            99875 53

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.12  E-value=3.1e-10  Score=69.43  Aligned_cols=76  Identities=22%  Similarity=0.227  Sum_probs=37.3

Q ss_pred             CcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcC
Q 036214            3 SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQL   82 (90)
Q Consensus         3 n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l   82 (90)
                      |.+.+..+..|.. +++|++|++++|.  +.+.. +. .+..+++|+.+++++|+++...+..+..+++|+.|++++|.+
T Consensus       110 N~l~~l~~~~~~~-l~~L~~L~L~~N~--l~~~~-~~-~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l  184 (290)
T 1p9a_G          110 NRLTSLPLGALRG-LGELQELYLKGNE--LKTLP-PG-LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL  184 (290)
T ss_dssp             SCCCCCCSSTTTT-CTTCCEEECTTSC--CCCCC-TT-TTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CcCcccCHHHHcC-CCCCCEEECCCCC--CCccC-hh-hcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcC
Confidence            3344333333444 5555555555555  44332 22 344555555555555555533223344555555555555555


Q ss_pred             c
Q 036214           83 T   83 (90)
Q Consensus        83 ~   83 (90)
                      +
T Consensus       185 ~  185 (290)
T 1p9a_G          185 Y  185 (290)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.11  E-value=1.6e-10  Score=72.45  Aligned_cols=81  Identities=17%  Similarity=0.185  Sum_probs=62.9

Q ss_pred             CCcCCccchhHHH-hhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCC
Q 036214            2 RSALNTSFLQSIG-ESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYN   80 (90)
Q Consensus         2 ~n~~~~~~p~~~~-~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n   80 (90)
                      +|.+.+..+..+. . +++|+.|++++|.  +.+.. +. .+..+++|+.|++++|+++...+..+..+++|+.|++++|
T Consensus        48 ~N~l~~l~~~~~~~~-l~~L~~L~L~~N~--i~~i~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N  122 (361)
T 2xot_A           48 HNNLSRLRAEWTPTR-LTNLHSLLLSHNH--LNFIS-SE-AFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNN  122 (361)
T ss_dssp             SSCCCEECTTSSSSC-CTTCCEEECCSSC--CCEEC-TT-TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CCCCCccChhhhhhc-ccccCEEECCCCc--CCccC-hh-hccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCC
Confidence            4566655554454 5 8899999999999  77654 45 6888899999999999998555567888999999999999


Q ss_pred             cCcccCC
Q 036214           81 QLTGSIS   87 (90)
Q Consensus        81 ~l~~~~p   87 (90)
                      .+.+..|
T Consensus       123 ~i~~~~~  129 (361)
T 2xot_A          123 HIVVVDR  129 (361)
T ss_dssp             CCCEECT
T ss_pred             cccEECH
Confidence            9887544

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.11  E-value=7.5e-11  Score=78.67  Aligned_cols=73  Identities=16%  Similarity=0.247  Sum_probs=46.1

Q ss_pred             chhHHH--hhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCc-CCC-cchhhhhcC------CCccEEecc
Q 036214            9 FLQSIG--ESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASND-LRG-SLPWCLANM------TSLRILDVS   78 (90)
Q Consensus         9 ~p~~~~--~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~-~~~-~~p~~~~~l------~~L~~l~l~   78 (90)
                      +|+.+.  . +++|++|++++|.  +.+.+ |. .+..+++|+.+++++|+ +++ .+|..+..+      ++|+.|+++
T Consensus       239 ip~~l~~~~-l~~L~~L~L~~n~--l~~~~-p~-~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~  313 (636)
T 4eco_A          239 KTEDLKWDN-LKDLTDVEVYNCP--NLTKL-PT-FLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIG  313 (636)
T ss_dssp             TTSCCCGGG-CTTCCEEEEECCT--TCSSC-CT-TTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECC
T ss_pred             Cchhhhhcc-cCCCCEEEecCCc--CCccC-hH-HHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECC
Confidence            666665  6 7777777777776  66665 65 66666677777777776 665 566555544      555666666


Q ss_pred             CCcCcccCC
Q 036214           79 YNQLTGSIS   87 (90)
Q Consensus        79 ~n~l~~~~p   87 (90)
                      +|.+. .+|
T Consensus       314 ~n~l~-~ip  321 (636)
T 4eco_A          314 YNNLK-TFP  321 (636)
T ss_dssp             SSCCS-SCC
T ss_pred             CCcCC-ccC
Confidence            55555 444

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.10  E-value=2.5e-10  Score=73.44  Aligned_cols=80  Identities=19%  Similarity=0.233  Sum_probs=47.0

Q ss_pred             CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214            2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ   81 (90)
Q Consensus         2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~   81 (90)
                      +|.+.+..+..|.. +++|++|++++|.  +.+.. +. .+..+++|+.+++++|.++...+..+..+++|+.|++++|.
T Consensus        41 ~n~l~~~~~~~~~~-l~~L~~L~L~~n~--i~~~~-~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  115 (477)
T 2id5_A           41 KNRIKTLNQDEFAS-FPHLEELELNENI--VSAVE-PG-AFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENK  115 (477)
T ss_dssp             SSCCCEECTTTTTT-CTTCCEEECTTSC--CCEEC-TT-TTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSC
T ss_pred             CCccceECHhHccC-CCCCCEEECCCCc--cCEeC-hh-hhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCc
Confidence            34555544555555 6666666666666  55544 44 56666666666666666663333345566666666666666


Q ss_pred             CcccC
Q 036214           82 LTGSI   86 (90)
Q Consensus        82 l~~~~   86 (90)
                      +.+..
T Consensus       116 i~~~~  120 (477)
T 2id5_A          116 IVILL  120 (477)
T ss_dssp             CCEEC
T ss_pred             cccCC
Confidence            65543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.10  E-value=3e-10  Score=74.82  Aligned_cols=80  Identities=24%  Similarity=0.289  Sum_probs=41.1

Q ss_pred             CcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCC-cchhhhhcCCCccEEeccCCc
Q 036214            3 SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRG-SLPWCLANMTSLRILDVSYNQ   81 (90)
Q Consensus         3 n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~-~~p~~~~~l~~L~~l~l~~n~   81 (90)
                      |.+.+..|..|.. +++|++|++++|.  +.+.. +. .+..+.+|+.+++++|.+.+ .+|..+.++++|++|++++|.
T Consensus        90 n~l~~~~p~~~~~-l~~L~~L~L~~n~--l~~~~-~~-~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~  164 (606)
T 3vq2_A           90 NPIQSFSPGSFSG-LTSLENLVAVETK--LASLE-SF-PIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY  164 (606)
T ss_dssp             CCCCCCCTTSSTT-CTTCCEEECTTSC--CCCSS-SS-CCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred             CcccccChhhcCC-cccCCEEEccCCc--ccccc-cc-ccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc
Confidence            3344444444444 5555555555555  43332 23 44555555555555555543 345566666666666666666


Q ss_pred             CcccCC
Q 036214           82 LTGSIS   87 (90)
Q Consensus        82 l~~~~p   87 (90)
                      +.+..|
T Consensus       165 l~~~~~  170 (606)
T 3vq2_A          165 IQTITV  170 (606)
T ss_dssp             CCEECT
T ss_pred             ceecCh
Confidence            655433

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.10  E-value=2.6e-10  Score=66.05  Aligned_cols=73  Identities=16%  Similarity=0.366  Sum_probs=32.5

Q ss_pred             cCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCc-CCCcchhhhhcCCCccEEeccCCcC
Q 036214            4 ALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASND-LRGSLPWCLANMTSLRILDVSYNQL   82 (90)
Q Consensus         4 ~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~-~~~~~p~~~~~l~~L~~l~l~~n~l   82 (90)
                      .+.+..+..+.. +++|++|++++|.  +.+.. +. .+..+++|+.+++++|. ++ .++ .+..+++|+.|++++|.+
T Consensus        99 ~l~~~~~~~l~~-l~~L~~L~Ls~n~--i~~~~-~~-~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i  171 (197)
T 4ezg_A           99 DVTSDKIPNLSG-LTSLTLLDISHSA--HDDSI-LT-KINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGV  171 (197)
T ss_dssp             TCBGGGSCCCTT-CTTCCEEECCSSB--CBGGG-HH-HHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCC
T ss_pred             ccCcccChhhcC-CCCCCEEEecCCc--cCcHh-HH-HHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCC
Confidence            333333334444 4445555555544  44332 33 34444445555555544 33 333 344444455555554444


Q ss_pred             c
Q 036214           83 T   83 (90)
Q Consensus        83 ~   83 (90)
                      .
T Consensus       172 ~  172 (197)
T 4ezg_A          172 H  172 (197)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.10  E-value=1.7e-10  Score=75.99  Aligned_cols=78  Identities=19%  Similarity=0.130  Sum_probs=46.1

Q ss_pred             CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214            2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ   81 (90)
Q Consensus         2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~   81 (90)
                      +|.+.+..|..|.. +++|++|++++|.  +.+.. +. .+..+++|+.+++++|++++..|..+..+++|++|++++|.
T Consensus        42 ~n~i~~~~~~~~~~-l~~L~~L~Ls~n~--i~~~~-~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  116 (606)
T 3t6q_A           42 FNVLPTIQNTTFSR-LINLTFLDLTRCQ--IYWIH-ED-TFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTG  116 (606)
T ss_dssp             TCCCSEECTTTSTT-CTTCSEEECTTCC--CCEEC-TT-TTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSC
T ss_pred             CCccCcCChhHhcc-CccceEEECCCCc--cceeC-hh-hccCccccCeeeCCCCcccccChhhhcccccccEeeccccC
Confidence            34555544555555 6666666666666  55443 44 56666666666666666665555556666666666666665


Q ss_pred             Ccc
Q 036214           82 LTG   84 (90)
Q Consensus        82 l~~   84 (90)
                      +.+
T Consensus       117 i~~  119 (606)
T 3t6q_A          117 ISS  119 (606)
T ss_dssp             CSC
T ss_pred             ccc
Confidence            554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.10  E-value=3.7e-10  Score=69.73  Aligned_cols=78  Identities=22%  Similarity=0.277  Sum_probs=64.6

Q ss_pred             CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214            2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ   81 (90)
Q Consensus         2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~   81 (90)
                      +|.+.+..|..+.. +++|+.|++++|.  +.+.. +. .+..+++|+.+++++|.++ .+|..+..+++|+.+++++|.
T Consensus       201 ~n~l~~~~~~~~~~-l~~L~~L~Ls~n~--l~~~~-~~-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~  274 (330)
T 1xku_A          201 GNKITKVDAASLKG-LNNLAKLGLSFNS--ISAVD-NG-SLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNN  274 (330)
T ss_dssp             TSCCCEECTGGGTT-CTTCCEEECCSSC--CCEEC-TT-TGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSC
T ss_pred             CCcCCccCHHHhcC-CCCCCEEECCCCc--CceeC-hh-hccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCc
Confidence            46666666777777 8999999999999  77654 55 6788889999999999998 888888889999999999998


Q ss_pred             Cccc
Q 036214           82 LTGS   85 (90)
Q Consensus        82 l~~~   85 (90)
                      +++.
T Consensus       275 i~~~  278 (330)
T 1xku_A          275 ISAI  278 (330)
T ss_dssp             CCCC
T ss_pred             CCcc
Confidence            8764

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.10  E-value=2.6e-10  Score=73.98  Aligned_cols=75  Identities=20%  Similarity=0.247  Sum_probs=46.1

Q ss_pred             CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214            2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ   81 (90)
Q Consensus         2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~   81 (90)
                      +|.+.+..|..+.. +++|++|++++|.  +.+.. |. .+..+++|+++++++|+++ .+|..  .+++|++|++++|.
T Consensus        30 ~n~i~~~~~~~~~~-l~~L~~L~Ls~n~--l~~~~-~~-~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~  101 (520)
T 2z7x_B           30 QNYISELWTSDILS-LSKLRILIISHNR--IQYLD-IS-VFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNA  101 (520)
T ss_dssp             SSCCCCCCHHHHTT-CTTCCEEECCSSC--CCEEE-GG-GGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSC
T ss_pred             CCcccccChhhccc-cccccEEecCCCc--cCCcC-hH-HhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCc
Confidence            35555555555655 6667777777776  55544 44 5666666666666666666 45544  56666666666666


Q ss_pred             Ccc
Q 036214           82 LTG   84 (90)
Q Consensus        82 l~~   84 (90)
                      +.+
T Consensus       102 l~~  104 (520)
T 2z7x_B          102 FDA  104 (520)
T ss_dssp             CSS
T ss_pred             ccc
Confidence            654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.09  E-value=3.2e-10  Score=72.76  Aligned_cols=79  Identities=16%  Similarity=0.166  Sum_probs=59.5

Q ss_pred             CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214            2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ   81 (90)
Q Consensus         2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~   81 (90)
                      +|++.+..+..|.. +++|+.|++++|.  +.+.. +. .+..+++|+.+++++|.++...+..+..+++|+.|++++|.
T Consensus        84 ~n~i~~~~~~~~~~-l~~L~~L~Ls~n~--i~~~~-~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  158 (452)
T 3zyi_A           84 ENNIQMIQADTFRH-LHHLEVLQLGRNS--IRQIE-VG-AFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNP  158 (452)
T ss_dssp             SSCCCEECTTTTTT-CTTCCEEECCSSC--CCEEC-TT-TTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCC
T ss_pred             CCcCceECHHHcCC-CCCCCEEECCCCc--cCCcC-hh-hccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCC
Confidence            46666666666777 8888888888888  66654 55 67788888888888888885555567778888888888888


Q ss_pred             Cccc
Q 036214           82 LTGS   85 (90)
Q Consensus        82 l~~~   85 (90)
                      +.+.
T Consensus       159 l~~~  162 (452)
T 3zyi_A          159 IESI  162 (452)
T ss_dssp             CCEE
T ss_pred             ccee
Confidence            7753

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.09  E-value=1.7e-10  Score=75.35  Aligned_cols=75  Identities=25%  Similarity=0.249  Sum_probs=41.3

Q ss_pred             cchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcccCC
Q 036214            8 SFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTGSIS   87 (90)
Q Consensus         8 ~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~~~p   87 (90)
                      .+|..+.. +++|++|++++|.  +.+.. +. .+..+++|+.+++++|++++..+..+..+++|+.+++++|.+.+..|
T Consensus       461 ~~p~~~~~-l~~L~~L~l~~n~--l~~~~-~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  535 (570)
T 2z63_A          461 FLPDIFTE-LRNLTFLDLSQCQ--LEQLS-PT-AFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  535 (570)
T ss_dssp             EECSCCTT-CTTCCEEECTTSC--CCEEC-TT-TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             cchhhhhc-ccCCCEEECCCCc--cccCC-hh-hhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence            34444444 5555555555555  44443 44 45555556666666666654444455555666666666666655544

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.09  E-value=2e-10  Score=77.83  Aligned_cols=77  Identities=22%  Similarity=0.253  Sum_probs=63.7

Q ss_pred             CcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcC
Q 036214            3 SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQL   82 (90)
Q Consensus         3 n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l   82 (90)
                      |.+. .+|..++. +++|+.|+|++|.  ++ .+ |. .+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+
T Consensus       234 n~l~-~l~~~~~~-l~~L~~L~Ls~N~--l~-~l-p~-~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l  305 (727)
T 4b8c_D          234 LQIF-NISANIFK-YDFLTRLYLNGNS--LT-EL-PA-EIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMV  305 (727)
T ss_dssp             SCCS-CCCGGGGG-CCSCSCCBCTTSC--CS-CC-CG-GGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCC
T ss_pred             CCCC-CCChhhcC-CCCCCEEEeeCCc--Cc-cc-Ch-hhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCC
Confidence            4444 67777777 8999999999999  66 45 77 7888999999999999998 7888899999999999999988


Q ss_pred             cccCCC
Q 036214           83 TGSISL   88 (90)
Q Consensus        83 ~~~~p~   88 (90)
                      . .+|.
T Consensus       306 ~-~lp~  310 (727)
T 4b8c_D          306 T-TLPW  310 (727)
T ss_dssp             C-CCCS
T ss_pred             C-ccCh
Confidence            6 5564

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.08  E-value=4.7e-10  Score=74.26  Aligned_cols=65  Identities=20%  Similarity=0.135  Sum_probs=28.3

Q ss_pred             CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCccc
Q 036214           17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTGS   85 (90)
Q Consensus        17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~~   85 (90)
                      +++|+.|++++|.  +.+.. +. .+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+.
T Consensus        98 l~~L~~L~L~~n~--l~~~~-~~-~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~  162 (597)
T 3oja_B           98 AHTIQKLYMGFNA--IRYLP-PH-VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI  162 (597)
T ss_dssp             CTTCCEEECCSSC--CCCCC-TT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC
T ss_pred             CCCCCEEECCCCc--CCCCC-HH-HHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCC
Confidence            4444444444444  33332 22 344444444444444444422222234444444444444444443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.08  E-value=6.7e-10  Score=67.04  Aligned_cols=64  Identities=28%  Similarity=0.352  Sum_probs=31.3

Q ss_pred             CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcc
Q 036214           17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTG   84 (90)
Q Consensus        17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~   84 (90)
                      +++|+.|++++|.  +.+.. +. .+..+++|+.+++++|.+++..+..+..+++|+.|++++|.+.+
T Consensus       132 l~~L~~L~Ls~n~--l~~~~-~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  195 (270)
T 2o6q_A          132 LTKLTYLSLGYNE--LQSLP-KG-VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR  195 (270)
T ss_dssp             CTTCCEEECCSSC--CCCCC-TT-TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CcCCCEEECCCCc--CCccC-Hh-HccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCc
Confidence            4555555555555  43322 22 34445555555555555553333344555555555555555543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.08  E-value=7.4e-10  Score=73.86  Aligned_cols=80  Identities=19%  Similarity=0.158  Sum_probs=47.2

Q ss_pred             CcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcC
Q 036214            3 SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQL   82 (90)
Q Consensus         3 n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l   82 (90)
                      |.+.+..|..+.. +++|++|++++|.  +.... +. .+..+++|+++++++|++++..|..+..+++|++|++++|.+
T Consensus        59 n~l~~~~~~~~~~-l~~L~~L~L~~n~--l~~l~-~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  133 (680)
T 1ziw_A           59 NTISKLEPELCQK-LPMLKVLNLQHNE--LSQLS-DK-TFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL  133 (680)
T ss_dssp             SCCCCCCTTHHHH-CTTCCEEECCSSC--CCCCC-TT-TTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCC
T ss_pred             CccCccCHHHHhc-ccCcCEEECCCCc--cCccC-hh-hhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcc
Confidence            4455555555555 6666666666666  55432 22 466666666666666666644445566666666666666666


Q ss_pred             cccCC
Q 036214           83 TGSIS   87 (90)
Q Consensus        83 ~~~~p   87 (90)
                      .+..|
T Consensus       134 ~~~~~  138 (680)
T 1ziw_A          134 SSTKL  138 (680)
T ss_dssp             SCCCC
T ss_pred             cccCc
Confidence            55433

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.06  E-value=6.5e-10  Score=67.41  Aligned_cols=68  Identities=21%  Similarity=0.238  Sum_probs=33.0

Q ss_pred             HHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCc-CCCcchhhhhcCCCccEEeccCCcCcc
Q 036214           12 SIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASND-LRGSLPWCLANMTSLRILDVSYNQLTG   84 (90)
Q Consensus        12 ~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~-~~~~~p~~~~~l~~L~~l~l~~n~l~~   84 (90)
                      .+.. +++|++|++++|.  +.+.. +. .+..+++|+.+++++|. ++...+..+..+++|+.|++++|.+.+
T Consensus        51 ~~~~-~~~L~~L~l~~n~--l~~~~-~~-~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~  119 (285)
T 1ozn_A           51 SFRA-CRNLTILWLHSNV--LARID-AA-AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE  119 (285)
T ss_dssp             TTTT-CTTCCEEECCSSC--CCEEC-TT-TTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCC
T ss_pred             Hccc-CCCCCEEECCCCc--cceeC-Hh-hcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCE
Confidence            3444 5555555555555  44433 33 44455555555555554 443334444445555555555554444

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.06  E-value=5.4e-10  Score=67.50  Aligned_cols=77  Identities=22%  Similarity=0.190  Sum_probs=41.1

Q ss_pred             CcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcC
Q 036214            3 SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQL   82 (90)
Q Consensus         3 n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l   82 (90)
                      |.+.+..+..+.. +++|++|++++|.  +.+.. +. .+..+++|+.+++++|.+++..+..+..+++|+.|++++|.+
T Consensus        38 n~l~~~~~~~~~~-l~~L~~L~l~~n~--l~~~~-~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  112 (276)
T 2z62_A           38 NPLRHLGSYSFFS-FPELQVLDLSRCE--IQTIE-DG-AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL  112 (276)
T ss_dssp             CCCCEECTTTTTT-CTTCSEEECTTCC--CCEEC-TT-TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred             CcccccCHhHhcc-ccCCcEEECCCCc--CCccC-HH-HccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCc
Confidence            3444333334444 6666666666666  44432 33 455556666666666666544444555555555555555555


Q ss_pred             cc
Q 036214           83 TG   84 (90)
Q Consensus        83 ~~   84 (90)
                      .+
T Consensus       113 ~~  114 (276)
T 2z62_A          113 AS  114 (276)
T ss_dssp             CC
T ss_pred             cc
Confidence            44

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.06  E-value=4.2e-10  Score=69.59  Aligned_cols=78  Identities=23%  Similarity=0.271  Sum_probs=61.5

Q ss_pred             CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214            2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ   81 (90)
Q Consensus         2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~   81 (90)
                      +|.+.+..+..+.. +++|+.|++++|.  +.+.. +. .+..+++|+.+++++|+++ .+|..+..+++|+.+++++|.
T Consensus       202 ~n~i~~~~~~~l~~-l~~L~~L~L~~N~--l~~~~-~~-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~  275 (332)
T 2ft3_A          202 HNKIQAIELEDLLR-YSKLYRLGLGHNQ--IRMIE-NG-SLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNN  275 (332)
T ss_dssp             SSCCCCCCTTSSTT-CTTCSCCBCCSSC--CCCCC-TT-GGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSC
T ss_pred             CCcCCccCHHHhcC-CCCCCEEECCCCc--CCcCC-hh-HhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCC
Confidence            45566665566777 8888888888888  77654 55 6778888889999988888 778888888888899998888


Q ss_pred             Cccc
Q 036214           82 LTGS   85 (90)
Q Consensus        82 l~~~   85 (90)
                      +++.
T Consensus       276 l~~~  279 (332)
T 2ft3_A          276 ITKV  279 (332)
T ss_dssp             CCBC
T ss_pred             CCcc
Confidence            8764

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.05  E-value=1.1e-09  Score=66.05  Aligned_cols=64  Identities=27%  Similarity=0.245  Sum_probs=32.8

Q ss_pred             CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcc
Q 036214           17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTG   84 (90)
Q Consensus        17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~   84 (90)
                      +++|++|++++|.  +.+.. +. .+..+++|+.+++++|.+++..+..+..+++|+.|++++|.+.+
T Consensus       108 l~~L~~L~l~~n~--l~~~~-~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  171 (270)
T 2o6q_A          108 LVNLAELRLDRNQ--LKSLP-PR-VFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR  171 (270)
T ss_dssp             CSSCCEEECCSSC--CCCCC-TT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             ccCCCEEECCCCc--cCeeC-HH-HhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE
Confidence            4555555555555  44332 22 34455555555555555553333335555566666666655554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.05  E-value=1.7e-09  Score=61.07  Aligned_cols=79  Identities=16%  Similarity=0.134  Sum_probs=46.4

Q ss_pred             CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcch---hhhhcCCCccEEecc
Q 036214            2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLP---WCLANMTSLRILDVS   78 (90)
Q Consensus         2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p---~~~~~l~~L~~l~l~   78 (90)
                      +|.+.+.+|..+.. +++|++|++++|.  +++...+. .+..+++|+.+++++|.+++..+   ..+..+++|+.++++
T Consensus        80 ~N~l~~~~~~~~~~-l~~L~~L~Ls~N~--l~~~~~~~-~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  155 (168)
T 2ell_A           80 ENRIFGGLDMLAEK-LPNLTHLNLSGNK--LKDISTLE-PLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGY  155 (168)
T ss_dssp             SCCCCSCCCHHHHH-CTTCCEEECBSSS--CCSSGGGG-GGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTE
T ss_pred             CCcCchHHHHHHhh-CCCCCEEeccCCc--cCcchhHH-HHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCC
Confidence            34555545555555 6667777777766  55431013 56666667777777776663322   256666667777776


Q ss_pred             CCcCcc
Q 036214           79 YNQLTG   84 (90)
Q Consensus        79 ~n~l~~   84 (90)
                      +|.+..
T Consensus       156 ~n~~~~  161 (168)
T 2ell_A          156 DREDQE  161 (168)
T ss_dssp             ETTSCB
T ss_pred             CCChhh
Confidence            666554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.04  E-value=7.5e-10  Score=70.85  Aligned_cols=79  Identities=18%  Similarity=0.212  Sum_probs=53.2

Q ss_pred             CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214            2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ   81 (90)
Q Consensus         2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~   81 (90)
                      +|.+.+..+..|.. +++|++|++++|.  +.... +. .+..+++|+.|++++|+++...+..+..+++|+.|++++|.
T Consensus        73 ~n~i~~~~~~~~~~-l~~L~~L~Ls~n~--i~~i~-~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  147 (440)
T 3zyj_A           73 ENQIQIIKVNSFKH-LRHLEILQLSRNH--IRTIE-IG-AFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP  147 (440)
T ss_dssp             SCCCCEECTTTTSS-CSSCCEEECCSSC--CCEEC-GG-GGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCC
T ss_pred             CCcCCeeCHHHhhC-CCCCCEEECCCCc--CCccC-hh-hccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCc
Confidence            35555555555666 7777777777777  66543 44 67777777777777777774444467777777777777777


Q ss_pred             Cccc
Q 036214           82 LTGS   85 (90)
Q Consensus        82 l~~~   85 (90)
                      +.+.
T Consensus       148 i~~~  151 (440)
T 3zyj_A          148 IESI  151 (440)
T ss_dssp             CCEE
T ss_pred             cccc
Confidence            6653

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.04  E-value=8.7e-10  Score=66.58  Aligned_cols=78  Identities=27%  Similarity=0.319  Sum_probs=44.2

Q ss_pred             CcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCC-cchhhhhcCCCccEEeccCCc
Q 036214            3 SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRG-SLPWCLANMTSLRILDVSYNQ   81 (90)
Q Consensus         3 n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~-~~p~~~~~l~~L~~l~l~~n~   81 (90)
                      |.+.+..+..+.. +++|++|++++|.  +.+.. +. .+..+++|+.+++++|.+++ .+|..+..+++|+.|++++|.
T Consensus        86 n~l~~~~~~~~~~-l~~L~~L~l~~n~--l~~~~-~~-~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~  160 (276)
T 2z62_A           86 NPIQSLALGAFSG-LSSLQKLVAVETN--LASLE-NF-PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK  160 (276)
T ss_dssp             CCCCEECTTTTTT-CTTCCEEECTTSC--CCCST-TC-CCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred             CccCccChhhhcC-CccccEEECCCCC--ccccC-ch-hcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC
Confidence            3444443344444 5555556555555  44432 32 35556666666666666653 246666666777777777776


Q ss_pred             Cccc
Q 036214           82 LTGS   85 (90)
Q Consensus        82 l~~~   85 (90)
                      +.+.
T Consensus       161 l~~~  164 (276)
T 2z62_A          161 IQSI  164 (276)
T ss_dssp             CCEE
T ss_pred             CCcC
Confidence            6653

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.03  E-value=4.5e-10  Score=68.68  Aligned_cols=78  Identities=22%  Similarity=0.309  Sum_probs=54.2

Q ss_pred             CcCCccchhHHHhhCCCCcEEeccCCcccccc-ccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214            3 SALNTSFLQSIGESMSSLKYLSLSGSTIGINS-SMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ   81 (90)
Q Consensus         3 n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~-~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~   81 (90)
                      |.+.+..+..+.. +++|++|++++|.  +.+ .. +. .+..+++|+.+++++|.+++..|..+..+++|+.|++++|.
T Consensus       136 n~l~~~~~~~~~~-l~~L~~L~l~~n~--l~~~~~-~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~  210 (306)
T 2z66_A          136 THTRVAFNGIFNG-LSSLEVLKMAGNS--FQENFL-PD-IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN  210 (306)
T ss_dssp             SCCEECSTTTTTT-CTTCCEEECTTCE--EGGGEE-CS-CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred             CcCCccchhhccc-CcCCCEEECCCCc--cccccc-hh-HHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCc
Confidence            4455555555555 7777777777777  554 23 44 66777778888888888775556777777788888888887


Q ss_pred             Cccc
Q 036214           82 LTGS   85 (90)
Q Consensus        82 l~~~   85 (90)
                      +.+.
T Consensus       211 l~~~  214 (306)
T 2z66_A          211 FFSL  214 (306)
T ss_dssp             CSBC
T ss_pred             cCcc
Confidence            7664

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.03  E-value=9.5e-10  Score=68.52  Aligned_cols=78  Identities=21%  Similarity=0.189  Sum_probs=52.7

Q ss_pred             CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214            2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ   81 (90)
Q Consensus         2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~   81 (90)
                      +|.+.+..+..+.. +++|+.|++++|.  +.+.. +. .+..+++|+.+++++|++++..+..+..+++|++|++++|.
T Consensus        61 ~n~i~~~~~~~~~~-l~~L~~L~L~~n~--l~~~~-~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  135 (353)
T 2z80_A           61 NNRITYISNSDLQR-CVNLQALVLTSNG--INTIE-ED-SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP  135 (353)
T ss_dssp             TSCCCEECTTTTTT-CTTCCEEECTTSC--CCEEC-TT-TTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCC
T ss_pred             CCcCcccCHHHhcc-CCCCCEEECCCCc--cCccC-Hh-hcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCC
Confidence            34555444445656 7778888888777  66554 44 57777778888888887774444447777778888887777


Q ss_pred             Ccc
Q 036214           82 LTG   84 (90)
Q Consensus        82 l~~   84 (90)
                      +.+
T Consensus       136 l~~  138 (353)
T 2z80_A          136 YKT  138 (353)
T ss_dssp             CSS
T ss_pred             Ccc
Confidence            764

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.03  E-value=1.2e-09  Score=68.72  Aligned_cols=17  Identities=35%  Similarity=0.415  Sum_probs=6.9

Q ss_pred             hcCCCccEEeccCCcCc
Q 036214           67 ANMTSLRILDVSYNQLT   83 (90)
Q Consensus        67 ~~l~~L~~l~l~~n~l~   83 (90)
                      ..+++|+.|++++|.+.
T Consensus       138 ~~l~~L~~L~L~~n~l~  154 (390)
T 3o6n_A          138 HNTPKLTTLSMSNNNLE  154 (390)
T ss_dssp             TTCTTCCEEECCSSCCC
T ss_pred             cCCCCCcEEECCCCccC
Confidence            33444444444444433

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.03  E-value=5e-10  Score=72.94  Aligned_cols=81  Identities=22%  Similarity=0.215  Sum_probs=50.6

Q ss_pred             CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCC-cchhhhhcCCCccEEeccCC
Q 036214            2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRG-SLPWCLANMTSLRILDVSYN   80 (90)
Q Consensus         2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~-~~p~~~~~l~~L~~l~l~~n   80 (90)
                      +|.+.+..|..|.. +++|++|++++|.  +.+.. +. .+..+++|+++++++|.+++ ..|..+..+++|+.|++++|
T Consensus        59 ~n~i~~~~~~~~~~-l~~L~~L~Ls~n~--l~~~~-~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n  133 (549)
T 2z81_A           59 SSRINTIEGDAFYS-LGSLEHLDLSDNH--LSSLS-SS-WFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNV  133 (549)
T ss_dssp             TSCCCEECTTTTTT-CTTCCEEECTTSC--CCSCC-HH-HHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEES
T ss_pred             CCCcCccChhhccc-cccCCEEECCCCc--cCccC-HH-HhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCC
Confidence            35555555555666 7777777777777  66553 44 56677777777777777664 23455666666666666666


Q ss_pred             cCcccCC
Q 036214           81 QLTGSIS   87 (90)
Q Consensus        81 ~l~~~~p   87 (90)
                      .+.+.+|
T Consensus       134 ~~~~~~~  140 (549)
T 2z81_A          134 ETFSEIR  140 (549)
T ss_dssp             SSCCEEC
T ss_pred             ccccccC
Confidence            6444443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.03  E-value=7.9e-10  Score=71.15  Aligned_cols=81  Identities=19%  Similarity=0.225  Sum_probs=60.1

Q ss_pred             CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214            2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ   81 (90)
Q Consensus         2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~   81 (90)
                      +|.+.+..|..|.. +++|++|++++|.  +.... +. .+..+++|+.+++++|.+.+..+..+..+++|+.|++++|.
T Consensus        65 ~n~i~~~~~~~~~~-l~~L~~L~L~~n~--l~~~~-~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~  139 (477)
T 2id5_A           65 ENIVSAVEPGAFNN-LFNLRTLGLRSNR--LKLIP-LG-VFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND  139 (477)
T ss_dssp             TSCCCEECTTTTTT-CTTCCEEECCSSC--CCSCC-TT-SSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT
T ss_pred             CCccCEeChhhhhC-CccCCEEECCCCc--CCccC-cc-cccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCc
Confidence            45666666777777 8888888888888  66543 33 56778888888888888876667777788888888888887


Q ss_pred             CcccCC
Q 036214           82 LTGSIS   87 (90)
Q Consensus        82 l~~~~p   87 (90)
                      +.+..|
T Consensus       140 l~~~~~  145 (477)
T 2id5_A          140 LVYISH  145 (477)
T ss_dssp             CCEECT
T ss_pred             cceeCh
Confidence            766543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.03  E-value=5e-10  Score=72.69  Aligned_cols=81  Identities=22%  Similarity=0.238  Sum_probs=46.4

Q ss_pred             CCcCCccchhHHHhhCCCCcEEeccCCcccccc--ccchhhhhcCcccccEEEccCCcCCCcchhh-hhcCCCccEEecc
Q 036214            2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINS--SMILDQGLCSLVHLQELYIASNDLRGSLPWC-LANMTSLRILDVS   78 (90)
Q Consensus         2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~--~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~-~~~l~~L~~l~l~   78 (90)
                      +|.+.+.+|..+.. +++|++|++++|.  +.+  .. |. .+..+++|+.+++++|.+++.+|.. +..+++|+.++++
T Consensus       333 ~n~l~~~~~~~~~~-l~~L~~L~L~~N~--l~~l~~~-~~-~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls  407 (520)
T 2z7x_B          333 NNLLTDTVFENCGH-LTELETLILQMNQ--LKELSKI-AE-MTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMS  407 (520)
T ss_dssp             SSCCCTTTTTTCCC-CSSCCEEECCSSC--CCBHHHH-HH-HHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECC
T ss_pred             CCccChhhhhhhcc-CCCCCEEEccCCc--cCccccc-hH-HHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECc
Confidence            35555555555555 6666666666666  443  22 33 4556666666666666666434442 4555666666666


Q ss_pred             CCcCcccCC
Q 036214           79 YNQLTGSIS   87 (90)
Q Consensus        79 ~n~l~~~~p   87 (90)
                      +|.+++.+|
T Consensus       408 ~N~l~~~~~  416 (520)
T 2z7x_B          408 SNILTDTIF  416 (520)
T ss_dssp             SSCCCGGGG
T ss_pred             CCCCCcchh
Confidence            666655443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.03  E-value=5e-10  Score=73.12  Aligned_cols=81  Identities=22%  Similarity=0.322  Sum_probs=61.4

Q ss_pred             CCcCCccchhHHHhhCCCCcEEeccCCccccc-cccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCC
Q 036214            2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGIN-SSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYN   80 (90)
Q Consensus         2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~-~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n   80 (90)
                      +|.+.+..|..+.. +++|++|++++|.  +. +.. |. .+..+++|+.+++++|++++..|..+..+++|+.+++++|
T Consensus       430 ~n~l~~~~~~~~~~-l~~L~~L~l~~n~--l~~~~~-p~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  504 (570)
T 2z63_A          430 HTHTRVAFNGIFNG-LSSLEVLKMAGNS--FQENFL-PD-IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN  504 (570)
T ss_dssp             TSCCEECCTTTTTT-CTTCCEEECTTCE--EGGGEE-CS-CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CCcccccchhhhhc-CCcCcEEECcCCc--Cccccc-hh-hhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC
Confidence            34555556666666 8888888888888  65 344 65 6778888888888888888666788888888888888888


Q ss_pred             cCcccCC
Q 036214           81 QLTGSIS   87 (90)
Q Consensus        81 ~l~~~~p   87 (90)
                      .+++..|
T Consensus       505 ~l~~~~~  511 (570)
T 2z63_A          505 QLKSVPD  511 (570)
T ss_dssp             CCSCCCT
T ss_pred             cCCCCCH
Confidence            8887644

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.02  E-value=1.1e-09  Score=66.92  Aligned_cols=77  Identities=30%  Similarity=0.316  Sum_probs=57.4

Q ss_pred             CcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcC
Q 036214            3 SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQL   82 (90)
Q Consensus         3 n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l   82 (90)
                      |.+. .+|..+.. +++|++|++++|.  +++.. +. .+..+++|+.+++++|++++..+..+..+++|+.|++++|++
T Consensus        87 N~l~-~l~~~~~~-l~~L~~L~l~~N~--l~~l~-~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  160 (290)
T 1p9a_G           87 NQLQ-SLPLLGQT-LPALTVLDVSFNR--LTSLP-LG-ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL  160 (290)
T ss_dssp             SCCS-SCCCCTTT-CTTCCEEECCSSC--CCCCC-SS-TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             CcCC-cCchhhcc-CCCCCEEECCCCc--CcccC-HH-HHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence            3443 55666666 8888888888888  66653 44 678888888888888888855556677888888888888888


Q ss_pred             ccc
Q 036214           83 TGS   85 (90)
Q Consensus        83 ~~~   85 (90)
                      ++.
T Consensus       161 ~~l  163 (290)
T 1p9a_G          161 TEL  163 (290)
T ss_dssp             SCC
T ss_pred             Ccc
Confidence            753

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.02  E-value=7.9e-10  Score=72.81  Aligned_cols=78  Identities=15%  Similarity=0.130  Sum_probs=63.2

Q ss_pred             CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214            2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ   81 (90)
Q Consensus         2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~   81 (90)
                      +|.+.+..|..|.. +++|++|++++|.  +.+.. +. .+..+++|+.+++++|.+++..+..+..+++|++|++++|.
T Consensus        66 ~n~i~~~~~~~~~~-l~~L~~L~Ls~n~--l~~~~-~~-~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~  140 (606)
T 3t6q_A           66 RCQIYWIHEDTFQS-QHRLDTLVLTANP--LIFMA-ET-ALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH  140 (606)
T ss_dssp             TCCCCEECTTTTTT-CTTCCEEECTTCC--CSEEC-TT-TTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC
T ss_pred             CCccceeChhhccC-ccccCeeeCCCCc--ccccC-hh-hhcccccccEeeccccCcccCCcchhccCCcccEEECCCCc
Confidence            46677777777877 8999999999998  77665 66 78888889999999998885556778888888888888888


Q ss_pred             Ccc
Q 036214           82 LTG   84 (90)
Q Consensus        82 l~~   84 (90)
                      +.+
T Consensus       141 l~~  143 (606)
T 3t6q_A          141 ISS  143 (606)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            876

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.02  E-value=7e-10  Score=72.81  Aligned_cols=75  Identities=28%  Similarity=0.380  Sum_probs=42.4

Q ss_pred             CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214            2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ   81 (90)
Q Consensus         2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~   81 (90)
                      +|.+.+..+..+.. +++|++|++++|.  +++.. +. .+..+++|+++++++|+++ .+|..  .+++|+.|++++|.
T Consensus        61 ~N~i~~~~~~~~~~-l~~L~~L~Ls~N~--l~~~~-~~-~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~  132 (562)
T 3a79_B           61 QNSISELRMPDISF-LSELRVLRLSHNR--IRSLD-FH-VFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFND  132 (562)
T ss_dssp             SSCCCCCCGGGTTT-CTTCCEEECCSCC--CCEEC-TT-TTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSC
T ss_pred             CCCccccChhhhcc-CCCccEEECCCCC--CCcCC-HH-HhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCC
Confidence            34455444455555 6666666666666  55543 44 5566666666666666665 44443  45555666666555


Q ss_pred             Ccc
Q 036214           82 LTG   84 (90)
Q Consensus        82 l~~   84 (90)
                      +.+
T Consensus       133 l~~  135 (562)
T 3a79_B          133 FDV  135 (562)
T ss_dssp             CSB
T ss_pred             ccc
Confidence            554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.01  E-value=1.1e-09  Score=63.48  Aligned_cols=66  Identities=24%  Similarity=0.366  Sum_probs=48.7

Q ss_pred             hHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214           11 QSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ   81 (90)
Q Consensus        11 ~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~   81 (90)
                      +.+.. +++|++|++++|.  +.+.. +. .+..+++|+.+++++|.+++..+..+..+++|+.|++++|.
T Consensus        82 ~~l~~-l~~L~~L~l~~n~--l~~~~-~~-~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~  147 (197)
T 4ezg_A           82 NPISG-LSNLERLRIMGKD--VTSDK-IP-NLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG  147 (197)
T ss_dssp             GGGTT-CTTCCEEEEECTT--CBGGG-SC-CCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCT
T ss_pred             hhhhc-CCCCCEEEeECCc--cCccc-Ch-hhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCC
Confidence            35555 7777888888777  66544 55 67777788888888888876667777788888888888876

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.01  E-value=2.7e-10  Score=78.64  Aligned_cols=75  Identities=21%  Similarity=0.264  Sum_probs=53.8

Q ss_pred             cchhHHH--hhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCc-CCC-cchhhhhcCC-------CccEEe
Q 036214            8 SFLQSIG--ESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASND-LRG-SLPWCLANMT-------SLRILD   76 (90)
Q Consensus         8 ~~p~~~~--~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~-~~~-~~p~~~~~l~-------~L~~l~   76 (90)
                      .+|+.+.  . +++|+.|++++|.  +.+.+ |. .+..+++|+.+++++|+ +++ .+|..+..+.       +|+.|+
T Consensus       480 ~iP~~l~f~~-L~~L~~L~Ls~N~--l~~~i-P~-~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~  554 (876)
T 4ecn_A          480 YENEELSWSN-LKDLTDVELYNCP--NMTQL-PD-FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFY  554 (876)
T ss_dssp             HTTSCCCGGG-CTTCCEEEEESCT--TCCSC-CG-GGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEE
T ss_pred             cCChhhhhcc-CCCCCEEECcCCC--CCccC-hH-HHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEE
Confidence            3777765  6 7788888888887  67766 76 77777788888888887 776 6776665554       777777


Q ss_pred             ccCCcCcccCCC
Q 036214           77 VSYNQLTGSISL   88 (90)
Q Consensus        77 l~~n~l~~~~p~   88 (90)
                      +++|.+. .+|.
T Consensus       555 Ls~N~L~-~ip~  565 (876)
T 4ecn_A          555 MGYNNLE-EFPA  565 (876)
T ss_dssp             CCSSCCC-BCCC
T ss_pred             eeCCcCC-ccCC
Confidence            7777777 5554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.01  E-value=1.2e-10  Score=71.64  Aligned_cols=35  Identities=26%  Similarity=0.106  Sum_probs=13.8

Q ss_pred             cccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214           47 HLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ   81 (90)
Q Consensus        47 ~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~   81 (90)
                      +|+++++++|++++..+..+..+++|+.|++++|.
T Consensus       150 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~  184 (312)
T 1wwl_A          150 GLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNP  184 (312)
T ss_dssp             TCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCT
T ss_pred             CCcEEEeeCCCCccchHHHhccCCCCCEEECCCCC
Confidence            33444444444333332333344444444444443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.01  E-value=3.5e-10  Score=77.44  Aligned_cols=64  Identities=30%  Similarity=0.329  Sum_probs=29.8

Q ss_pred             CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhh--hhcCCCccEEeccCCcCcc
Q 036214           17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWC--LANMTSLRILDVSYNQLTG   84 (90)
Q Consensus        17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~--~~~l~~L~~l~l~~n~l~~   84 (90)
                      +++|++|++++|.  +.+.. |. .+..+++|+.|++++|.+++..+..  +..+++|++|++++|.+.+
T Consensus        72 L~~L~~L~Ls~N~--l~~~~-p~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~  137 (844)
T 3j0a_A           72 LPNLRILDLGSSK--IYFLH-PD-AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS  137 (844)
T ss_dssp             CTTCCEEECTTCC--CCEEC-TT-SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCC
T ss_pred             CCCCCEEECCCCc--CcccC-Hh-HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccc
Confidence            4445555555444  44333 33 4444445555555555444333332  4444555555555554444

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.01  E-value=5.9e-10  Score=63.52  Aligned_cols=62  Identities=29%  Similarity=0.214  Sum_probs=33.5

Q ss_pred             CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchh--hhhcCCCccEEeccCCcCc
Q 036214           17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPW--CLANMTSLRILDVSYNQLT   83 (90)
Q Consensus        17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~--~~~~l~~L~~l~l~~n~l~   83 (90)
                      +++|++|++++|.  +++.. +. .+..+++|+.+++++|.++ .+|.  .+..+++|+.+++++|.+.
T Consensus        63 l~~L~~L~Ls~N~--l~~~~-~~-~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~  126 (176)
T 1a9n_A           63 LRRLKTLLVNNNR--ICRIG-EG-LDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT  126 (176)
T ss_dssp             CSSCCEEECCSSC--CCEEC-SC-HHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             CCCCCEEECCCCc--ccccC-cc-hhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC
Confidence            5555566666555  44321 22 2355555666666666654 4444  4555566666666666554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.00  E-value=1.6e-09  Score=72.21  Aligned_cols=81  Identities=20%  Similarity=0.093  Sum_probs=65.1

Q ss_pred             CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214            2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ   81 (90)
Q Consensus         2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~   81 (90)
                      +|.+.+..+..|.. +++|++|++++|.  +.+.. +. .+..+++|+.+++++|.++...+..+..+++|++|++++|.
T Consensus        34 ~n~l~~~~~~~~~~-l~~L~~L~Ls~n~--l~~~~-~~-~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~  108 (680)
T 1ziw_A           34 HNQLRRLPAANFTR-YSQLTSLDVGFNT--ISKLE-PE-LCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS  108 (680)
T ss_dssp             SSCCCCCCGGGGGG-GTTCSEEECCSSC--CCCCC-TT-HHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred             CCCCCCcCHHHHhC-CCcCcEEECCCCc--cCccC-HH-HHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCc
Confidence            46666666666777 9999999999999  77765 66 78889999999999999984444468899999999999998


Q ss_pred             CcccCC
Q 036214           82 LTGSIS   87 (90)
Q Consensus        82 l~~~~p   87 (90)
                      +.+..|
T Consensus       109 l~~~~~  114 (680)
T 1ziw_A          109 IQKIKN  114 (680)
T ss_dssp             CCCCCS
T ss_pred             cCccCh
Confidence            876543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.00  E-value=1.4e-09  Score=71.98  Aligned_cols=79  Identities=22%  Similarity=0.140  Sum_probs=66.0

Q ss_pred             CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214            2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ   81 (90)
Q Consensus         2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~   81 (90)
                      +|.+.+..|..|.. +++|+.|++++|.  +.+.  |...+..+++|+.+++++|.+++..|..+..+++|+.|++++|.
T Consensus       108 ~n~l~~~~~~~~~~-l~~L~~L~L~~n~--l~~l--~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~  182 (597)
T 3oja_B          108 FNAIRYLPPHVFQN-VPLLTVLVLERND--LSSL--PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR  182 (597)
T ss_dssp             SSCCCCCCTTTTTT-CTTCCEEECCSSC--CCCC--CTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC
T ss_pred             CCcCCCCCHHHHcC-CCCCCEEEeeCCC--CCCC--CHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC
Confidence            46777766666777 9999999999999  7764  44157889999999999999997778889999999999999999


Q ss_pred             Cccc
Q 036214           82 LTGS   85 (90)
Q Consensus        82 l~~~   85 (90)
                      +.+.
T Consensus       183 l~~~  186 (597)
T 3oja_B          183 LTHV  186 (597)
T ss_dssp             CSBC
T ss_pred             CCCc
Confidence            8763

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.00  E-value=1.2e-09  Score=70.19  Aligned_cols=63  Identities=19%  Similarity=0.279  Sum_probs=30.6

Q ss_pred             CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCc
Q 036214           17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLT   83 (90)
Q Consensus        17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~   83 (90)
                      +++|+.|++++|.  +.+.. +. .+..+++|+.+++++|++++..+..+..+++|+.|++++|+++
T Consensus       217 l~~L~~L~Ls~N~--l~~~~-~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  279 (452)
T 3zyi_A          217 LVGLEELEMSGNH--FPEIR-PG-SFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS  279 (452)
T ss_dssp             CTTCCEEECTTSC--CSEEC-GG-GGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             cccccEEECcCCc--CcccC-cc-cccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC
Confidence            4455555555555  44433 33 4444555555555555554444444444555555555555444

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.97  E-value=1.2e-09  Score=69.86  Aligned_cols=64  Identities=25%  Similarity=0.346  Sum_probs=32.0

Q ss_pred             CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcc
Q 036214           17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTG   84 (90)
Q Consensus        17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~   84 (90)
                      +++|+.|++++|.  +.+.. +. .+..+++|+.+++++|++++..+..+..+++|+.|++++|++++
T Consensus       206 l~~L~~L~Ls~N~--l~~~~-~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  269 (440)
T 3zyj_A          206 LIKLDELDLSGNH--LSAIR-PG-SFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTL  269 (440)
T ss_dssp             CSSCCEEECTTSC--CCEEC-TT-TTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCC
T ss_pred             CcccCEEECCCCc--cCccC-hh-hhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCc
Confidence            4555555555555  44433 33 44555555555555555554444444455555555555555443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.96  E-value=2.7e-09  Score=67.16  Aligned_cols=78  Identities=22%  Similarity=0.146  Sum_probs=62.7

Q ss_pred             CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214            2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ   81 (90)
Q Consensus         2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~   81 (90)
                      +|.+.+..|..+.. +++|++|++++|.  +...  +...+..+++|+.+++++|.+++..+..+..+++|+.|++++|.
T Consensus       102 ~n~l~~~~~~~~~~-l~~L~~L~L~~n~--l~~l--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~  176 (390)
T 3o6n_A          102 FNAIRYLPPHVFQN-VPLLTVLVLERND--LSSL--PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR  176 (390)
T ss_dssp             SSCCCCCCTTTTTT-CTTCCEEECCSSC--CCCC--CTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC
T ss_pred             CCCCCcCCHHHhcC-CCCCCEEECCCCc--cCcC--CHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc
Confidence            45666666666677 8999999999999  6654  44146788999999999999987767788999999999999998


Q ss_pred             Ccc
Q 036214           82 LTG   84 (90)
Q Consensus        82 l~~   84 (90)
                      +.+
T Consensus       177 l~~  179 (390)
T 3o6n_A          177 LTH  179 (390)
T ss_dssp             CSB
T ss_pred             CCc
Confidence            875

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.95  E-value=2.1e-09  Score=66.11  Aligned_cols=44  Identities=23%  Similarity=0.178  Sum_probs=20.4

Q ss_pred             cCcccccEEEccCCcCCC--cch-hhhhcCCCccEEeccCCcCcccC
Q 036214           43 CSLVHLQELYIASNDLRG--SLP-WCLANMTSLRILDVSYNQLTGSI   86 (90)
Q Consensus        43 ~~l~~l~~l~l~~n~~~~--~~p-~~~~~l~~L~~l~l~~n~l~~~~   86 (90)
                      ..+++|+.+++++|++++  ..+ ..+..+++|+.|++++|.+.+..
T Consensus       198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  244 (312)
T 1wwl_A          198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA  244 (312)
T ss_dssp             TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC
T ss_pred             ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCccc
Confidence            344445555555555541  111 22234455555555555555543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.94  E-value=2.5e-09  Score=69.53  Aligned_cols=76  Identities=18%  Similarity=0.202  Sum_probs=44.0

Q ss_pred             CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214            2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ   81 (90)
Q Consensus         2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~   81 (90)
                      +|.+.+..|..+...+++|+.|++++|.  +++.  +  ....++.|+.+++++|.++ .+|..+..+++|+.|++++|.
T Consensus       153 ~N~l~~~~~~~l~~~l~~L~~L~Ls~N~--l~~~--~--~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~Ls~N~  225 (487)
T 3oja_A          153 LNEIDTVNFAELAASSDTLEHLNLQYNF--IYDV--K--GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNK  225 (487)
T ss_dssp             TSCCCEEEGGGGGGGTTTCCEEECTTSC--CCEE--E--CCCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSC
T ss_pred             CCCCCCcChHHHhhhCCcccEEecCCCc--cccc--c--ccccCCCCCEEECCCCCCC-CCCHhHcCCCCccEEEecCCc
Confidence            3455555555554225556666666665  4442  1  2234566677777777776 344446667777777777777


Q ss_pred             Ccc
Q 036214           82 LTG   84 (90)
Q Consensus        82 l~~   84 (90)
                      +.+
T Consensus       226 l~~  228 (487)
T 3oja_A          226 LVL  228 (487)
T ss_dssp             CCE
T ss_pred             Ccc
Confidence            765

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.94  E-value=7.3e-10  Score=65.72  Aligned_cols=78  Identities=14%  Similarity=0.157  Sum_probs=44.9

Q ss_pred             CcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccC-CcCCCcchhhhhcCCCccEEeccCCc
Q 036214            3 SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIAS-NDLRGSLPWCLANMTSLRILDVSYNQ   81 (90)
Q Consensus         3 n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~-n~~~~~~p~~~~~l~~L~~l~l~~n~   81 (90)
                      |++.+..+..+.. +++|++|++++|.. ++... +. .+..+++|+.+++++ |.++...+..+..+++|+.+++++|.
T Consensus        41 n~l~~i~~~~~~~-l~~L~~L~l~~n~~-l~~i~-~~-~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~  116 (239)
T 2xwt_C           41 THLRTIPSHAFSN-LPNISRIYVSIDVT-LQQLE-SH-SFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG  116 (239)
T ss_dssp             CCCSEECTTTTTT-CTTCCEEEEECCSS-CCEEC-TT-TEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEEC
T ss_pred             CcceEECHHHccC-CCCCcEEeCCCCCC-cceeC-Hh-HcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCC
Confidence            4444443434555 66777777776630 22222 33 466666777777776 66663333456666667777776666


Q ss_pred             Ccc
Q 036214           82 LTG   84 (90)
Q Consensus        82 l~~   84 (90)
                      +.+
T Consensus       117 l~~  119 (239)
T 2xwt_C          117 LKM  119 (239)
T ss_dssp             CCS
T ss_pred             Ccc
Confidence            654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.93  E-value=1.5e-09  Score=74.34  Aligned_cols=79  Identities=16%  Similarity=0.148  Sum_probs=34.9

Q ss_pred             CcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcC
Q 036214            3 SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQL   82 (90)
Q Consensus         3 n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l   82 (90)
                      |.+.+..|..|.. +++|++|++++|.  ..+.+.+. .+..+++|++|++++|.+++..|..+..+++|++|++++|.+
T Consensus        34 N~i~~i~~~~~~~-l~~L~~LdLs~n~--~~~~i~~~-~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l  109 (844)
T 3j0a_A           34 NYIRTVTASSFPF-LEQLQLLELGSQY--TPLTIDKE-AFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGL  109 (844)
T ss_dssp             CCCCEECSSSCSS-CCSCSEEEECTTC--CCCEECTT-TTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCC
T ss_pred             CcCCccChhHCcc-cccCeEEeCCCCC--CccccCHH-HhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCC
Confidence            3344333444444 4445555554443  22222022 344444455555555544433344444444555555554444


Q ss_pred             ccc
Q 036214           83 TGS   85 (90)
Q Consensus        83 ~~~   85 (90)
                      .+.
T Consensus       110 ~~~  112 (844)
T 3j0a_A          110 SDA  112 (844)
T ss_dssp             SSC
T ss_pred             Ccc
Confidence            443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.90  E-value=2.9e-09  Score=66.34  Aligned_cols=74  Identities=24%  Similarity=0.232  Sum_probs=48.2

Q ss_pred             CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchh--hhhcCCCccEEeccC
Q 036214            2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPW--CLANMTSLRILDVSY   79 (90)
Q Consensus         2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~--~~~~l~~L~~l~l~~   79 (90)
                      +|.+.+..+..+.. +++|++|++++|.  +++.. +. .+..+++|+.+++++|.++ .+|.  .+..+++|+.+++++
T Consensus        85 ~n~l~~~~~~~~~~-l~~L~~L~Ls~n~--l~~~~-~~-~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~  158 (353)
T 2z80_A           85 SNGINTIEEDSFSS-LGSLEHLDLSYNY--LSNLS-SS-WFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGN  158 (353)
T ss_dssp             TSCCCEECTTTTTT-CTTCCEEECCSSC--CSSCC-HH-HHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEE
T ss_pred             CCccCccCHhhcCC-CCCCCEEECCCCc--CCcCC-Hh-HhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCC
Confidence            35555555555666 7777777777777  65542 33 4667777777777777777 4443  566677777777776


Q ss_pred             Cc
Q 036214           80 NQ   81 (90)
Q Consensus        80 n~   81 (90)
                      |.
T Consensus       159 n~  160 (353)
T 2z80_A          159 MD  160 (353)
T ss_dssp             SS
T ss_pred             Cc
Confidence            63

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.90  E-value=2.4e-09  Score=70.25  Aligned_cols=81  Identities=22%  Similarity=0.220  Sum_probs=45.8

Q ss_pred             CCcCCccchhHHHhhCCCCcEEeccCCccccccc--cchhhhhcCcccccEEEccCCcCCCcchh-hhhcCCCccEEecc
Q 036214            2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSS--MILDQGLCSLVHLQELYIASNDLRGSLPW-CLANMTSLRILDVS   78 (90)
Q Consensus         2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~--~~~~~~~~~l~~l~~l~l~~n~~~~~~p~-~~~~l~~L~~l~l~   78 (90)
                      +|.+.+..|..+.. +++|++|++++|.  +++.  . +. .+..+++|+.+++++|.+++.+|. .+..+++|+.++++
T Consensus       362 ~n~l~~~~~~~~~~-l~~L~~L~L~~N~--l~~~~~~-~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~  436 (562)
T 3a79_B          362 QNVFTDSVFQGCST-LKRLQTLILQRNG--LKNFFKV-AL-MTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLS  436 (562)
T ss_dssp             SSCCCTTTTTTCCS-CSSCCEEECCSSC--CCBTTHH-HH-TTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECC
T ss_pred             CCccccchhhhhcc-cCCCCEEECCCCC--cCCcccc-hh-hhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECC
Confidence            35555555655555 6666666666666  5442  1 22 455666666666666666643443 34555556666666


Q ss_pred             CCcCcccCC
Q 036214           79 YNQLTGSIS   87 (90)
Q Consensus        79 ~n~l~~~~p   87 (90)
                      +|.+++.+|
T Consensus       437 ~n~l~~~~~  445 (562)
T 3a79_B          437 SNMLTGSVF  445 (562)
T ss_dssp             SSCCCGGGG
T ss_pred             CCCCCcchh
Confidence            666555443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.87  E-value=1.9e-09  Score=66.21  Aligned_cols=79  Identities=16%  Similarity=-0.017  Sum_probs=49.9

Q ss_pred             CCcCCccchhHH--HhhCCCCcEEeccCCccccccccchh---hhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEe
Q 036214            2 RSALNTSFLQSI--GESMSSLKYLSLSGSTIGINSSMILD---QGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILD   76 (90)
Q Consensus         2 ~n~~~~~~p~~~--~~~l~~l~~L~l~~n~~~~~~~~~~~---~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~   76 (90)
                      +|.+.+..|..+  .. +++|+.|++++|.  +.+.. +.   ..+..+++|+.+++++|.+.+..+..+..+++|+.|+
T Consensus       100 ~n~l~~~~~~~~~~~~-~~~L~~L~Ls~n~--i~~~~-~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  175 (310)
T 4glp_A          100 DLKITGTMPPLPLEAT-GLALSSLRLRNVS--WATGR-SWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLD  175 (310)
T ss_dssp             SCCCBSCCCCCSSSCC-CBCCSSCEEESCC--CSSTT-SSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEE
T ss_pred             CCEeccchhhhhhhcc-CCCCCEEEeeccc--ccchh-hhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEE
Confidence            355666666555  44 6677777777777  55432 20   0334566777777777777655556677777777777


Q ss_pred             ccCCcCcc
Q 036214           77 VSYNQLTG   84 (90)
Q Consensus        77 l~~n~l~~   84 (90)
                      +++|++.+
T Consensus       176 Ls~N~l~~  183 (310)
T 4glp_A          176 LSDNPGLG  183 (310)
T ss_dssp             CCSCTTCH
T ss_pred             CCCCCCcc
Confidence            77776543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.87  E-value=5.9e-09  Score=64.44  Aligned_cols=17  Identities=12%  Similarity=0.395  Sum_probs=8.6

Q ss_pred             hhcCCCccEEeccCCcC
Q 036214           66 LANMTSLRILDVSYNQL   82 (90)
Q Consensus        66 ~~~l~~L~~l~l~~n~l   82 (90)
                      +..+++|+.+++++|.+
T Consensus       143 ~~~l~~L~~L~l~~n~l  159 (332)
T 2ft3_A          143 FSGLRNMNCIEMGGNPL  159 (332)
T ss_dssp             GSSCSSCCEEECCSCCC
T ss_pred             hCCCccCCEEECCCCcc
Confidence            44445555555555544

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.87  E-value=6.1e-09  Score=64.27  Aligned_cols=39  Identities=28%  Similarity=0.485  Sum_probs=17.3

Q ss_pred             CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCC
Q 036214           17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLR   59 (90)
Q Consensus        17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~   59 (90)
                      +++|++|++++|.  +.+.. +. .+..+++|+.+++++|.++
T Consensus        75 l~~L~~L~L~~n~--l~~~~-~~-~~~~l~~L~~L~Ls~n~l~  113 (330)
T 1xku_A           75 LKNLHTLILINNK--ISKIS-PG-AFAPLVKLERLYLSKNQLK  113 (330)
T ss_dssp             CTTCCEEECCSSC--CCCBC-TT-TTTTCTTCCEEECCSSCCS
T ss_pred             CCCCCEEECCCCc--CCeeC-HH-HhcCCCCCCEEECCCCcCC
Confidence            4444444444444  33332 33 3444444444444444433

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.87  E-value=8.3e-09  Score=63.57  Aligned_cols=75  Identities=19%  Similarity=0.215  Sum_probs=43.1

Q ss_pred             CcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcC
Q 036214            3 SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQL   82 (90)
Q Consensus         3 n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l   82 (90)
                      |.+.+..+..+...+++|++|++++|.  +++.  +  ....+++|+.+++++|.++ .+|..+..+++|+.+++++|.+
T Consensus       154 N~l~~~~~~~~~~~l~~L~~L~L~~N~--l~~~--~--~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l  226 (317)
T 3o53_A          154 NEIDTVNFAELAASSDTLEHLNLQYNF--IYDV--K--GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKL  226 (317)
T ss_dssp             SCCCEEEGGGGGGGTTTCCEEECTTSC--CCEE--E--CCCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCC
T ss_pred             CCCCcccHHHHhhccCcCCEEECCCCc--Cccc--c--cccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCcc
Confidence            445544444443225666666666666  4432  2  2234566667777777666 4444466667777777777766


Q ss_pred             cc
Q 036214           83 TG   84 (90)
Q Consensus        83 ~~   84 (90)
                      .+
T Consensus       227 ~~  228 (317)
T 3o53_A          227 VL  228 (317)
T ss_dssp             CE
T ss_pred             cc
Confidence            64

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.86  E-value=3.9e-09  Score=68.65  Aligned_cols=78  Identities=22%  Similarity=0.155  Sum_probs=52.0

Q ss_pred             CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhc-CcccccEEEccCCcCCCcchhhhhcCCCccEEeccCC
Q 036214            2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLC-SLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYN   80 (90)
Q Consensus         2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~-~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n   80 (90)
                      +|.+.+..|..+.. +++|+.|++++|.  +.+.. +. .+. .++.|+.+++++|.+++. +. ...+++|+.|++++|
T Consensus       129 ~N~l~~~~~~~~~~-l~~L~~L~Ls~N~--l~~~~-~~-~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N  201 (487)
T 3oja_A          129 NNKITMLRDLDEGC-RSRVQYLDLKLNE--IDTVN-FA-ELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSN  201 (487)
T ss_dssp             SSCCCSGGGBCGGG-GSSEEEEECTTSC--CCEEE-GG-GGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSS
T ss_pred             CCCCCCCCchhhcC-CCCCCEEECCCCC--CCCcC-hH-HHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCC
Confidence            45566666666666 7777777777777  66654 55 444 567777777777777733 32 334777888888888


Q ss_pred             cCcccC
Q 036214           81 QLTGSI   86 (90)
Q Consensus        81 ~l~~~~   86 (90)
                      .+++..
T Consensus       202 ~l~~~~  207 (487)
T 3oja_A          202 KLAFMG  207 (487)
T ss_dssp             CCCEEC
T ss_pred             CCCCCC
Confidence            777643

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.84  E-value=1.4e-08  Score=62.82  Aligned_cols=69  Identities=23%  Similarity=0.341  Sum_probs=48.3

Q ss_pred             HHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcccCC
Q 036214           12 SIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTGSIS   87 (90)
Q Consensus        12 ~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~~~p   87 (90)
                      .+.. +++|+.|++++|.  +.+.   . .+..+++|+.+++++|.+++..+..+..+++|+.+++++|.+++..|
T Consensus       260 ~~~~-l~~L~~L~l~~n~--l~~~---~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  328 (347)
T 4fmz_A          260 AVKD-LTKLKMLNVGSNQ--ISDI---S-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP  328 (347)
T ss_dssp             GGTT-CTTCCEEECCSSC--CCCC---G-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred             hHhc-CCCcCEEEccCCc--cCCC---h-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence            4555 7777777777777  5543   2 45667777777777777776666777777777777777777766543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.82  E-value=6.9e-09  Score=64.96  Aligned_cols=79  Identities=15%  Similarity=0.056  Sum_probs=47.4

Q ss_pred             CCcCCccchhHHHhhCCCCcEEeccCCccccccccch----hhhhcCcc-cccEEEccCCcCCCcchhhhhcC-----CC
Q 036214            2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMIL----DQGLCSLV-HLQELYIASNDLRGSLPWCLANM-----TS   71 (90)
Q Consensus         2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~----~~~~~~l~-~l~~l~l~~n~~~~~~p~~~~~l-----~~   71 (90)
                      .|.+.+.+|..+.. ..+|++|++++|.  +.+.. +    . .+..++ +|+.+++++|.+++..+..+..+     ++
T Consensus         7 ~n~~~~~~~~~~~~-~~~L~~L~Ls~n~--l~~~~-~~~l~~-~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            7 LHPGSNPVEEFTSI-PHGVTSLDLSLNN--LYSIS-TVELIQ-AFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             CCTTCCHHHHHHTS-CTTCCEEECTTSC--GGGSC-HHHHHH-HHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             cccchHHHHHHHhC-CCCceEEEccCCC--CChHH-HHHHHH-HHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            45666666654443 4457777777777  55443 3    3 455555 67777777777765545555443     66


Q ss_pred             ccEEeccCCcCccc
Q 036214           72 LRILDVSYNQLTGS   85 (90)
Q Consensus        72 L~~l~l~~n~l~~~   85 (90)
                      |+.|++++|.+.+.
T Consensus        82 L~~L~Ls~n~l~~~   95 (362)
T 3goz_A           82 VTSLNLSGNFLSYK   95 (362)
T ss_dssp             CCEEECCSSCGGGS
T ss_pred             ccEEECcCCcCChH
Confidence            77777777766543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.82  E-value=2.2e-08  Score=62.00  Aligned_cols=64  Identities=19%  Similarity=0.391  Sum_probs=34.0

Q ss_pred             HHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCc
Q 036214           13 IGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLT   83 (90)
Q Consensus        13 ~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~   83 (90)
                      +.. +++|+.|++++|.  +.+.. +. .+..++.|+.+++++|.+++..|  +..+++|+.+++++|.++
T Consensus       283 ~~~-l~~L~~L~L~~n~--l~~~~-~~-~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          283 LNN-LSQLNSLFLNNNQ--LGNED-ME-VIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             GGG-CTTCSEEECCSSC--CCGGG-HH-HHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             hcC-CCCCCEEECcCCc--CCCcC-hh-HhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            444 5566666666666  44443 44 45555666666666666653333  555556666666666543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.82  E-value=2.2e-09  Score=65.89  Aligned_cols=80  Identities=15%  Similarity=0.127  Sum_probs=39.9

Q ss_pred             CcCCccchhHHHhhCCCCcEEeccCCccccccc--cchh-hhhcCcccccEEEccCCcCCCcchh----hhhcCCCccEE
Q 036214            3 SALNTSFLQSIGESMSSLKYLSLSGSTIGINSS--MILD-QGLCSLVHLQELYIASNDLRGSLPW----CLANMTSLRIL   75 (90)
Q Consensus         3 n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~--~~~~-~~~~~l~~l~~l~l~~n~~~~~~p~----~~~~l~~L~~l   75 (90)
                      |.+.+..+..+.. +++|++|++++|.  +.+.  . +. ..+..+++|+.+++++|+++ .++.    .+..+++|++|
T Consensus       155 n~l~~~~~~~~~~-l~~L~~L~Ls~N~--l~~~~~~-~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L  229 (310)
T 4glp_A          155 AHSPAFSCEQVRA-FPALTSLDLSDNP--GLGERGL-MAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSL  229 (310)
T ss_dssp             CSSCCCCTTSCCC-CTTCCEEECCSCT--TCHHHHH-HTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSE
T ss_pred             CCcchhhHHHhcc-CCCCCEEECCCCC--Cccchhh-hHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEE
Confidence            4444444444444 5666666666665  3321  1 11 01234455555555555554 2232    23455666666


Q ss_pred             eccCCcCcccCC
Q 036214           76 DVSYNQLTGSIS   87 (90)
Q Consensus        76 ~l~~n~l~~~~p   87 (90)
                      ++++|.+.+..|
T Consensus       230 ~Ls~N~l~~~~p  241 (310)
T 4glp_A          230 DLSHNSLRATVN  241 (310)
T ss_dssp             ECTTSCCCCCCC
T ss_pred             ECCCCCCCccch
Confidence            666666666544

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.81  E-value=9.4e-09  Score=58.50  Aligned_cols=75  Identities=17%  Similarity=0.207  Sum_probs=56.6

Q ss_pred             CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214            2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ   81 (90)
Q Consensus         2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~   81 (90)
                      +|.+. .++ .+....++|++|++++|.  +++.   . .+..+++|+++++++|.+++..+..+..+++|+.|++++|.
T Consensus        28 ~n~l~-~i~-~~~~~~~~L~~L~Ls~N~--l~~~---~-~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~   99 (176)
T 1a9n_A           28 GYKIP-VIE-NLGATLDQFDAIDFSDNE--IRKL---D-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNS   99 (176)
T ss_dssp             TSCCC-SCC-CGGGGTTCCSEEECCSSC--CCEE---C-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCC
T ss_pred             CCCCc-hhH-HhhhcCCCCCEEECCCCC--CCcc---c-ccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCc
Confidence            35555 344 345513489999999999  7653   3 67888999999999999994433555889999999999999


Q ss_pred             Ccc
Q 036214           82 LTG   84 (90)
Q Consensus        82 l~~   84 (90)
                      +..
T Consensus       100 i~~  102 (176)
T 1a9n_A          100 LVE  102 (176)
T ss_dssp             CCC
T ss_pred             CCc
Confidence            854

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.72  E-value=7.7e-08  Score=59.17  Aligned_cols=39  Identities=23%  Similarity=0.440  Sum_probs=15.8

Q ss_pred             hcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcC
Q 036214           42 LCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQL   82 (90)
Q Consensus        42 ~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l   82 (90)
                      +..+++|+.+++++|++++ ++. +..+++|+.|++++|.+
T Consensus       103 ~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l  141 (308)
T 1h6u_A          103 IAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQI  141 (308)
T ss_dssp             GTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCC
T ss_pred             hcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCcc
Confidence            3334444444444444442 221 33444444444444443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.72  E-value=1.1e-08  Score=60.66  Aligned_cols=62  Identities=24%  Similarity=0.265  Sum_probs=31.2

Q ss_pred             HHHhhCCCCcEEeccC-CccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCcc---EEeccCC
Q 036214           12 SIGESMSSLKYLSLSG-STIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLR---ILDVSYN   80 (90)
Q Consensus        12 ~~~~~l~~l~~L~l~~-n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~---~l~l~~n   80 (90)
                      .|.. +++|++|++++ |.  ++... +. .+..+++|+.+++++|.++ .+|. +..+.+|+   .+++++|
T Consensus        75 ~f~~-l~~L~~L~l~~~n~--l~~i~-~~-~f~~l~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~~L~l~~N  140 (239)
T 2xwt_C           75 SFYN-LSKVTHIEIRNTRN--LTYID-PD-ALKELPLLKFLGIFNTGLK-MFPD-LTKVYSTDIFFILEITDN  140 (239)
T ss_dssp             TEES-CTTCCEEEEEEETT--CCEEC-TT-SEECCTTCCEEEEEEECCC-SCCC-CTTCCBCCSEEEEEEESC
T ss_pred             HcCC-CcCCcEEECCCCCC--eeEcC-HH-HhCCCCCCCEEeCCCCCCc-cccc-cccccccccccEEECCCC
Confidence            3444 66666666665 55  44432 33 4555556666666655555 2333 33344443   4444444

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.71  E-value=1e-07  Score=58.20  Aligned_cols=40  Identities=33%  Similarity=0.509  Sum_probs=16.9

Q ss_pred             hcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCc
Q 036214           42 LCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLT   83 (90)
Q Consensus        42 ~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~   83 (90)
                      +..+++|+.+++++|.+++..+  +..+++|+.|++++|.++
T Consensus       152 l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~  191 (291)
T 1h6t_A          152 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS  191 (291)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             hccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence            3334444444444444442221  444444444444444443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.71  E-value=9.2e-08  Score=58.43  Aligned_cols=60  Identities=32%  Similarity=0.520  Sum_probs=29.5

Q ss_pred             CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcc
Q 036214           17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTG   84 (90)
Q Consensus        17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~   84 (90)
                      +++|+.|++++|.  +.+.   . .+..+++|+.+++++|.+++ + ..+..+++|+.|++++|.+.+
T Consensus       111 l~~L~~L~L~~n~--i~~~---~-~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~N~l~~  170 (291)
T 1h6t_A          111 LKKLKSLSLEHNG--ISDI---N-GLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISD  170 (291)
T ss_dssp             CTTCCEEECTTSC--CCCC---G-GGGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCC
T ss_pred             CCCCCEEECCCCc--CCCC---h-hhcCCCCCCEEEccCCcCCc-c-hhhccCCCCCEEEccCCcccc
Confidence            4445555555544  3331   1 34444555555555555552 2 334555555555555555554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.71  E-value=1.1e-09  Score=63.39  Aligned_cols=65  Identities=25%  Similarity=0.328  Sum_probs=43.1

Q ss_pred             HHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcc
Q 036214           12 SIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTG   84 (90)
Q Consensus        12 ~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~   84 (90)
                      .+.. +++|++|++++|.  +.+ + +  .+..+++|+.+++++|.++ .+|..+..+++|+.|++++|.+.+
T Consensus        43 ~~~~-l~~L~~L~ls~n~--l~~-l-~--~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~  107 (198)
T 1ds9_A           43 TLST-LKACKHLALSTNN--IEK-I-S--SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS  107 (198)
T ss_dssp             HHHH-TTTCSEEECSEEE--ESC-C-C--CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC
T ss_pred             HHhc-CCCCCEEECCCCC--Ccc-c-c--ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc
Confidence            6666 7777777777777  555 2 3  4556667777777777776 556655555666667666666654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.70  E-value=1.2e-08  Score=62.80  Aligned_cols=62  Identities=29%  Similarity=0.404  Sum_probs=40.8

Q ss_pred             CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcc
Q 036214           17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTG   84 (90)
Q Consensus        17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~   84 (90)
                      +++|++|++++|.  +.+.. +. .+..+++|+.+++++|.+++..+  +..+++|+.|++++|.+.+
T Consensus        33 ~~~L~~L~L~~n~--l~~~~-~~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~   94 (317)
T 3o53_A           33 AWNVKELDLSGNP--LSQIS-AA-DLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE   94 (317)
T ss_dssp             GGGCSEEECTTSC--CCCCC-HH-HHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE
T ss_pred             CCCCCEEECcCCc--cCcCC-HH-HhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc
Confidence            4567777777777  66544 44 56677777777777777764333  6666777777777776654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.69  E-value=1.8e-08  Score=63.44  Aligned_cols=74  Identities=18%  Similarity=0.320  Sum_probs=44.6

Q ss_pred             ccchhHHHhhCCCCcEEeccCCccccccc----cchhhhh--cCcccccEEEccCCcCCC----cchhhh-hcCCCccEE
Q 036214            7 TSFLQSIGESMSSLKYLSLSGSTIGINSS----MILDQGL--CSLVHLQELYIASNDLRG----SLPWCL-ANMTSLRIL   75 (90)
Q Consensus         7 ~~~p~~~~~~l~~l~~L~l~~n~~~~~~~----~~~~~~~--~~l~~l~~l~l~~n~~~~----~~p~~~-~~l~~L~~l   75 (90)
                      +.+|..+.. +++|+.|++++|.  +.+.    + +. .+  ..+++|+.+++++|.+++    .+|..+ .++++|+.|
T Consensus       234 ~~l~~~l~~-~~~L~~L~L~~n~--i~~~~~~~l-~~-~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L  308 (386)
T 2ca6_A          234 SALAIALKS-WPNLRELGLNDCL--LSARGAAAV-VD-AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFL  308 (386)
T ss_dssp             HHHHHHGGG-CTTCCEEECTTCC--CCHHHHHHH-HH-HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEE
T ss_pred             HHHHHHHcc-CCCcCEEECCCCC--CchhhHHHH-HH-HHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEE
Confidence            445555555 6677777777776  5443    1 22 33  226667777777777764    256555 456777777


Q ss_pred             eccCCcCccc
Q 036214           76 DVSYNQLTGS   85 (90)
Q Consensus        76 ~l~~n~l~~~   85 (90)
                      ++++|.+++.
T Consensus       309 ~l~~N~l~~~  318 (386)
T 2ca6_A          309 ELNGNRFSEE  318 (386)
T ss_dssp             ECTTSBSCTT
T ss_pred             EccCCcCCcc
Confidence            7777776654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.69  E-value=2.2e-08  Score=61.71  Aligned_cols=70  Identities=21%  Similarity=0.328  Sum_probs=35.3

Q ss_pred             chhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCC-cCCC-cchhhhhcCCCccEEeccCC-cCc
Q 036214            9 FLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASN-DLRG-SLPWCLANMTSLRILDVSYN-QLT   83 (90)
Q Consensus         9 ~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n-~~~~-~~p~~~~~l~~L~~l~l~~n-~l~   83 (90)
                      ++..+.. +++|+.|++++|.  +.+.. +. .+..+++|+.+++++| .+++ .++..+..+++|+.|++++| .++
T Consensus       110 ~~~~~~~-~~~L~~L~L~~~~--l~~~~-~~-~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~  182 (336)
T 2ast_B          110 LHGILSQ-CSKLQNLSLEGLR--LSDPI-VN-TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFT  182 (336)
T ss_dssp             HHHHHTT-BCCCSEEECTTCB--CCHHH-HH-HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCC
T ss_pred             HHHHHhh-CCCCCEEeCcCcc--cCHHH-HH-HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcC
Confidence            3333444 5555555555555  44433 43 4555555555555555 3443 24444555555555555555 444

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.68  E-value=2.8e-08  Score=60.59  Aligned_cols=65  Identities=22%  Similarity=0.233  Sum_probs=52.0

Q ss_pred             CCCCcEEeccCCccccccc--cchhhhhcCcccccEEEccCCcCCCcchhhhhcCC--CccEEeccCCcCcccCC
Q 036214           17 MSSLKYLSLSGSTIGINSS--MILDQGLCSLVHLQELYIASNDLRGSLPWCLANMT--SLRILDVSYNQLTGSIS   87 (90)
Q Consensus        17 l~~l~~L~l~~n~~~~~~~--~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~--~L~~l~l~~n~l~~~~p   87 (90)
                      ++.|+.|++++|.  +++.  + +. .+..+++|+.|++++|.+++.  ..+..+.  +|+.|++++|.+++.+|
T Consensus       169 l~~L~~L~Ls~N~--l~~l~~l-~~-~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          169 IPELLSLNLSNNR--LYRLDDM-SS-IVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             CTTCCEEECTTSC--CCCCGGG-TT-HHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             CCCCCEEECCCCC--CCCCccc-hh-HHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence            8899999999999  7763  2 34 566889999999999999843  2234444  89999999999998665

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.68  E-value=1.6e-07  Score=57.72  Aligned_cols=40  Identities=23%  Similarity=0.326  Sum_probs=17.3

Q ss_pred             cCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcc
Q 036214           43 CSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTG   84 (90)
Q Consensus        43 ~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~   84 (90)
                      ..+++|+.+++++|.+++ ++. +..+++|+.|++++|.+.+
T Consensus       170 ~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~L~~N~l~~  209 (308)
T 1h6u_A          170 ANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISD  209 (308)
T ss_dssp             TTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCCB
T ss_pred             cCCCCCCEEECCCCccCc-Chh-hcCCCCCCEEEccCCccCc
Confidence            344444444444444442 221 3444444444444444443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.66  E-value=1.6e-07  Score=56.70  Aligned_cols=62  Identities=24%  Similarity=0.449  Sum_probs=29.1

Q ss_pred             HHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcc
Q 036214           13 IGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTG   84 (90)
Q Consensus        13 ~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~   84 (90)
                      +.. +++|+.|++++|.  +++.  +.  +.. ..|+.+++++|+++ .++ .+..+++|+.|++++|.+++
T Consensus        81 l~~-l~~L~~L~L~~N~--l~~l--~~--~~~-~~L~~L~L~~N~l~-~~~-~l~~l~~L~~L~Ls~N~i~~  142 (263)
T 1xeu_A           81 LKD-LTKLEELSVNRNR--LKNL--NG--IPS-ACLSRLFLDNNELR-DTD-SLIHLKNLEILSIRNNKLKS  142 (263)
T ss_dssp             GTT-CSSCCEEECCSSC--CSCC--TT--CCC-SSCCEEECCSSCCS-BSG-GGTTCTTCCEEECTTSCCCB
T ss_pred             hcc-CCCCCEEECCCCc--cCCc--Cc--ccc-CcccEEEccCCccC-CCh-hhcCcccccEEECCCCcCCC
Confidence            444 6666666666666  4432  21  111 34444444444444 222 24445555555555555443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.66  E-value=2.3e-08  Score=62.41  Aligned_cols=78  Identities=17%  Similarity=0.200  Sum_probs=47.4

Q ss_pred             CcCCccchh-HHHhhCCCCcEEeccCCccccccccchhhhhcCcccccE-EEccCCcCCCcchhhhhcCCCccEEeccCC
Q 036214            3 SALNTSFLQ-SIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQE-LYIASNDLRGSLPWCLANMTSLRILDVSYN   80 (90)
Q Consensus         3 n~~~~~~p~-~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~-l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n   80 (90)
                      |++. .+|+ .|.+ +++|++|++++|.  +.+.+ +...|..++.+.. +.+..|+++...|..+..+++|+.+++++|
T Consensus        40 N~i~-~i~~~~f~~-l~~L~~L~Ls~N~--i~~~i-~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n  114 (350)
T 4ay9_X           40 TKLR-VIQKGAFSG-FGDLEKIEISQND--VLEVI-EADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT  114 (350)
T ss_dssp             CCCS-EECTTSSTT-CTTCCEEEEECCT--TCCEE-CTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEE
T ss_pred             CcCC-CcCHHHHcC-CCCCCEEECcCCC--CCCcc-ChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccccccc
Confidence            4444 3343 3455 7777777777777  54444 3324566666554 445566676444566777777888888777


Q ss_pred             cCccc
Q 036214           81 QLTGS   85 (90)
Q Consensus        81 ~l~~~   85 (90)
                      .+.+.
T Consensus       115 ~l~~~  119 (350)
T 4ay9_X          115 GIKHL  119 (350)
T ss_dssp             CCSSC
T ss_pred             ccccC
Confidence            77653

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.64  E-value=1.9e-07  Score=62.36  Aligned_cols=60  Identities=28%  Similarity=0.421  Sum_probs=29.6

Q ss_pred             CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcc
Q 036214           17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTG   84 (90)
Q Consensus        17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~   84 (90)
                      +++|+.|++++|.  +.+.   . .+..+++|+.|+++.|.+.+..|  +..+++|+.|++++|.+.+
T Consensus       130 l~~L~~L~Ls~N~--l~~l---~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~  189 (605)
T 1m9s_A          130 LPQLESLYLGNNK--ITDI---T-VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD  189 (605)
T ss_dssp             CTTCSEEECCSSC--CCCC---G-GGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred             CCccCEEECCCCc--cCCc---h-hhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC
Confidence            5555555555555  4332   1 34455555555555555553333  4455555555555555443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.63  E-value=2.2e-07  Score=59.86  Aligned_cols=39  Identities=33%  Similarity=0.479  Sum_probs=16.2

Q ss_pred             CcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcc
Q 036214           44 SLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTG   84 (90)
Q Consensus        44 ~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~   84 (90)
                      .++.|+.+++++|.+++.  ..+..+++|+.+++++|++.+
T Consensus       329 ~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~  367 (466)
T 1o6v_A          329 SLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISD  367 (466)
T ss_dssp             GCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCB
T ss_pred             cCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCc
Confidence            334444444444444321  123344444444444444443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.63  E-value=6.2e-08  Score=60.64  Aligned_cols=69  Identities=22%  Similarity=0.339  Sum_probs=35.6

Q ss_pred             hHHHhhCC-CCcEEeccCCccccccccchhhhhcCc-----ccccEEEccCCcCCCcchhhhh----cC-CCccEEeccC
Q 036214           11 QSIGESMS-SLKYLSLSGSTIGINSSMILDQGLCSL-----VHLQELYIASNDLRGSLPWCLA----NM-TSLRILDVSY   79 (90)
Q Consensus        11 ~~~~~~l~-~l~~L~l~~n~~~~~~~~~~~~~~~~l-----~~l~~l~l~~n~~~~~~p~~~~----~l-~~L~~l~l~~   79 (90)
                      +.+.. ++ +|++|++++|.  +.+.. +. .+..+     +.|+.+++++|.+++..+..+.    .+ ++|+.|++++
T Consensus        44 ~~l~~-~~~~L~~L~Ls~N~--l~~~~-~~-~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~  118 (362)
T 3goz_A           44 QAFAN-TPASVTSLNLSGNS--LGFKN-SD-ELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGW  118 (362)
T ss_dssp             HHHHT-CCTTCCEEECCSSC--GGGSC-HH-HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCS
T ss_pred             HHHHh-CCCceeEEECcCCC--CCHHH-HH-HHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcC
Confidence            33444 55 56666666666  44433 33 33332     5566666666666544443222    22 5566666666


Q ss_pred             CcCcc
Q 036214           80 NQLTG   84 (90)
Q Consensus        80 n~l~~   84 (90)
                      |.+.+
T Consensus       119 N~l~~  123 (362)
T 3goz_A          119 NDFSS  123 (362)
T ss_dssp             SCGGG
T ss_pred             CcCCc
Confidence            65544

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.61  E-value=8.4e-08  Score=57.90  Aligned_cols=63  Identities=17%  Similarity=0.246  Sum_probs=33.8

Q ss_pred             HHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcc
Q 036214           13 IGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTG   84 (90)
Q Consensus        13 ~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~   84 (90)
                      +.. +++|+.|++++|.  +++.   . .+..+++|+.+++++|.+++.  ..+..+++|+.+++++|.+.+
T Consensus       124 l~~-l~~L~~L~Ls~N~--i~~~---~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~  186 (263)
T 1xeu_A          124 LIH-LKNLEILSIRNNK--LKSI---V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN  186 (263)
T ss_dssp             GTT-CTTCCEEECTTSC--CCBC---G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred             hcC-cccccEEECCCCc--CCCC---h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence            444 5556666666665  4432   1 344555566666666665533  345555556666666555543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.61  E-value=1.5e-07  Score=62.97  Aligned_cols=42  Identities=29%  Similarity=0.494  Sum_probs=21.8

Q ss_pred             hcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCccc
Q 036214           42 LCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTGS   85 (90)
Q Consensus        42 ~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~~   85 (90)
                      +..+++|+.|+++.|.+++ + ..+..+++|+.|++++|.+.+.
T Consensus       127 l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~~  168 (605)
T 1m9s_A          127 LVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDI  168 (605)
T ss_dssp             GGGCTTCSEEECCSSCCCC-C-GGGGSCTTCSEEECCSSCCCCC
T ss_pred             ccCCCccCEEECCCCccCC-c-hhhcccCCCCEEECcCCcCCCc
Confidence            4444555555555555552 2 3455555566666666555543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.61  E-value=3.5e-08  Score=60.75  Aligned_cols=76  Identities=21%  Similarity=0.166  Sum_probs=57.6

Q ss_pred             CcCCccchhHHHhhCCCCcEEeccCCccccccc-cchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCC-
Q 036214            3 SALNTSFLQSIGESMSSLKYLSLSGSTIGINSS-MILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYN-   80 (90)
Q Consensus         3 n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~-~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n-   80 (90)
                      |.+.+..+. +.. +++|+.|++++|.  +.+. . +. .+..+++|+.+++++|.+++..+..+..+++|+.|++++| 
T Consensus        80 n~l~~~~~~-~~~-~~~L~~L~L~~~~--l~~~~~-~~-~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~  153 (336)
T 2ast_B           80 SFMDQPLAE-HFS-PFRVQHMDLSNSV--IEVSTL-HG-ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS  153 (336)
T ss_dssp             CEECSCCCS-CCC-CBCCCEEECTTCE--ECHHHH-HH-HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCB
T ss_pred             ccccccchh-hcc-CCCCCEEEccCCC--cCHHHH-HH-HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCC
Confidence            344444333 445 7889999999988  6654 3 55 6778889999999999888778888888999999999988 


Q ss_pred             cCcc
Q 036214           81 QLTG   84 (90)
Q Consensus        81 ~l~~   84 (90)
                      .+++
T Consensus       154 ~l~~  157 (336)
T 2ast_B          154 GFSE  157 (336)
T ss_dssp             SCCH
T ss_pred             CCCH
Confidence            5654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.60  E-value=2.1e-09  Score=62.30  Aligned_cols=71  Identities=25%  Similarity=0.221  Sum_probs=41.6

Q ss_pred             chhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcch--hhhhcCCCccEEeccCCcCcccC
Q 036214            9 FLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLP--WCLANMTSLRILDVSYNQLTGSI   86 (90)
Q Consensus         9 ~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p--~~~~~l~~L~~l~l~~n~l~~~~   86 (90)
                      +|..+.. +++|++|++++|.  +++.  +  .+..+++|+.+++++|.++ .++  ..+..+++|+.+++++|.+.+..
T Consensus        85 l~~~~~~-~~~L~~L~L~~N~--l~~l--~--~~~~l~~L~~L~l~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~  156 (198)
T 1ds9_A           85 IENLDAV-ADTLEELWISYNQ--IASL--S--GIEKLVNLRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYNDY  156 (198)
T ss_dssp             CSSHHHH-HHHCSEEEEEEEE--CCCH--H--HHHHHHHSSEEEESEEECC-CHHHHHHHTTTTTCSEEEECSCHHHHHH
T ss_pred             ccchhhc-CCcCCEEECcCCc--CCcC--C--ccccCCCCCEEECCCCcCC-chhHHHHHhcCCCCCEEEecCCcccccc
Confidence            4444443 4556666666666  4431  2  3455566667777777666 333  35667777777777777776554


Q ss_pred             C
Q 036214           87 S   87 (90)
Q Consensus        87 p   87 (90)
                      |
T Consensus       157 ~  157 (198)
T 1ds9_A          157 K  157 (198)
T ss_dssp             H
T ss_pred             c
Confidence            3

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.60  E-value=1.8e-07  Score=60.19  Aligned_cols=72  Identities=18%  Similarity=0.274  Sum_probs=58.4

Q ss_pred             CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214            2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ   81 (90)
Q Consensus         2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~   81 (90)
                      +|.+.+..|  +.. +++|+.|++++|.  +.+.   . .+..+++|+.+++++|.+++..|  +..+++|+.+++++|.
T Consensus       318 ~n~l~~~~~--~~~-l~~L~~L~l~~n~--l~~~---~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~  386 (466)
T 1o6v_A          318 FNNISDISP--VSS-LTKLQRLFFYNNK--VSDV---S-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA  386 (466)
T ss_dssp             SSCCSCCGG--GGG-CTTCCEEECCSSC--CCCC---G-GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEE
T ss_pred             CCcCCCchh--hcc-CccCCEeECCCCc--cCCc---h-hhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCc
Confidence            455555544  555 8888888888888  6653   3 67889999999999999997766  8899999999999999


Q ss_pred             Ccc
Q 036214           82 LTG   84 (90)
Q Consensus        82 l~~   84 (90)
                      +++
T Consensus       387 ~~~  389 (466)
T 1o6v_A          387 WTN  389 (466)
T ss_dssp             EEC
T ss_pred             ccC
Confidence            887

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.55  E-value=8.6e-08  Score=61.21  Aligned_cols=72  Identities=29%  Similarity=0.342  Sum_probs=54.6

Q ss_pred             chhHHHhhCCCCcEEeccCCccccccccchhhhhcC-----cccccEEEccCCcCCC----cchhhhhcCCCccEEeccC
Q 036214            9 FLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCS-----LVHLQELYIASNDLRG----SLPWCLANMTSLRILDVSY   79 (90)
Q Consensus         9 ~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~-----l~~l~~l~l~~n~~~~----~~p~~~~~l~~L~~l~l~~   79 (90)
                      ++..+.. +++|++|++++|.  +.+.. +. .+..     .+.|+.+++++|.+++    .++..+..+++|+.+++++
T Consensus       333 l~~~l~~-~~~L~~L~Ls~n~--i~~~~-~~-~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~  407 (461)
T 1z7x_W          333 FSSVLAQ-NRFLLELQISNNR--LEDAG-VR-ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSN  407 (461)
T ss_dssp             HHHHHHH-CSSCCEEECCSSB--CHHHH-HH-HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCS
T ss_pred             HHHHHhh-CCCccEEEccCCc--ccccc-HH-HHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCC
Confidence            4555666 7899999999998  66543 33 3322     5689999999999886    6778888889999999999


Q ss_pred             CcCccc
Q 036214           80 NQLTGS   85 (90)
Q Consensus        80 n~l~~~   85 (90)
                      |.+.+.
T Consensus       408 N~i~~~  413 (461)
T 1z7x_W          408 NCLGDA  413 (461)
T ss_dssp             SSCCHH
T ss_pred             CCCCHH
Confidence            988753

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.54  E-value=2e-07  Score=58.66  Aligned_cols=64  Identities=22%  Similarity=0.290  Sum_probs=32.8

Q ss_pred             CCCCcEEeccCCccccc--c---ccchhhhhcCcccccEEEccCCcCC----CcchhhhhcCCCccEEeccCCcCcc
Q 036214           17 MSSLKYLSLSGSTIGIN--S---SMILDQGLCSLVHLQELYIASNDLR----GSLPWCLANMTSLRILDVSYNQLTG   84 (90)
Q Consensus        17 l~~l~~L~l~~n~~~~~--~---~~~~~~~~~~l~~l~~l~l~~n~~~----~~~p~~~~~l~~L~~l~l~~n~l~~   84 (90)
                      +++|+.|++++|.  +.  +   .. +. .+..+++|+.+++++|.++    ..+|..+..+++|+.|++++|.+.+
T Consensus       186 ~~~L~~L~L~~n~--l~~~g~~~l~-~~-~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~  258 (386)
T 2ca6_A          186 HRLLHTVKMVQNG--IRPEGIEHLL-LE-GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA  258 (386)
T ss_dssp             CTTCCEEECCSSC--CCHHHHHHHH-HT-TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred             CCCcCEEECcCCC--CCHhHHHHHH-HH-HhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCch
Confidence            5556666666655  33  1   11 21 3344555556666655553    2445555555555555555555543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.47  E-value=3.1e-07  Score=61.62  Aligned_cols=62  Identities=27%  Similarity=0.246  Sum_probs=50.0

Q ss_pred             CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcccCC
Q 036214           17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTGSIS   87 (90)
Q Consensus        17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~~~p   87 (90)
                      +++|+.|++++|.  ++..  |.    .+++|+.+++++|.++ .+|..+..+++|+.+++++|.+.+..|
T Consensus       240 l~~L~~L~Ls~N~--L~~l--p~----~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~  301 (622)
T 3g06_A          240 PSELKELMVSGNR--LTSL--PM----LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL  301 (622)
T ss_dssp             CTTCCEEECCSSC--CSCC--CC----CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHH
T ss_pred             CCcCcEEECCCCC--CCcC--Cc----ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCH
Confidence            5678888888887  6542  32    4577899999999999 788889999999999999999987654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.47  E-value=6.4e-07  Score=57.91  Aligned_cols=62  Identities=27%  Similarity=0.341  Sum_probs=33.7

Q ss_pred             HHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcc
Q 036214           12 SIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTG   84 (90)
Q Consensus        12 ~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~   84 (90)
                      .+.. +++|++|++++|.  +++.     .+..+++|+.+++++|.+++ ++  +..+++|++|++++|.+.+
T Consensus        59 ~l~~-l~~L~~L~Ls~n~--l~~~-----~~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~N~l~~  120 (457)
T 3bz5_A           59 GIEK-LTGLTKLICTSNN--ITTL-----DLSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLTK  120 (457)
T ss_dssp             TGGG-CTTCSEEECCSSC--CSCC-----CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECCSSCCSC
T ss_pred             hhcc-cCCCCEEEccCCc--CCeE-----ccccCCCCCEEECcCCCCce-ee--cCCCCcCCEEECCCCcCCe
Confidence            3445 6666666666666  5442     23445555666666665553 22  4555555555555555544

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.46  E-value=4.4e-07  Score=58.63  Aligned_cols=70  Identities=21%  Similarity=0.280  Sum_probs=50.9

Q ss_pred             CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214            2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ   81 (90)
Q Consensus         2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~   81 (90)
                      +|.+.+ +| .+.. +++|++|++++|.  +++ + |. .   ..+|+.+++++|.+++ +| .+..+++|+.+++++|.
T Consensus       140 ~n~l~~-lp-~~~~-l~~L~~L~l~~N~--l~~-l-p~-~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~  206 (454)
T 1jl5_A          140 NNQLEK-LP-ELQN-SSFLKIIDVDNNS--LKK-L-PD-L---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNS  206 (454)
T ss_dssp             SSCCSS-CC-CCTT-CTTCCEEECCSSC--CSC-C-CC-C---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSC
T ss_pred             CCCCCC-Cc-ccCC-CCCCCEEECCCCc--Ccc-c-CC-C---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCc
Confidence            355554 56 4666 8888888888888  665 3 44 2   2478888888888884 56 47788888888888888


Q ss_pred             Ccc
Q 036214           82 LTG   84 (90)
Q Consensus        82 l~~   84 (90)
                      +.+
T Consensus       207 l~~  209 (454)
T 1jl5_A          207 LKK  209 (454)
T ss_dssp             CSS
T ss_pred             CCc
Confidence            876

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.46  E-value=1.5e-07  Score=60.84  Aligned_cols=64  Identities=23%  Similarity=0.288  Sum_probs=24.5

Q ss_pred             CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCC--cchhhhhcC-------------CCccEEeccCCc
Q 036214           17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRG--SLPWCLANM-------------TSLRILDVSYNQ   81 (90)
Q Consensus        17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~--~~p~~~~~l-------------~~L~~l~l~~n~   81 (90)
                      +++|+.|++++|.  ++. + |.    .+.+|+.+++++|.+++  .+|..+..+             ++|+.+++++|+
T Consensus       336 ~~~L~~L~L~~N~--l~~-l-p~----~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~  407 (454)
T 1jl5_A          336 PPRLERLIASFNH--LAE-V-PE----LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP  407 (454)
T ss_dssp             CTTCCEEECCSSC--CSC-C-CC----CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---------------------
T ss_pred             CCcCCEEECCCCc--ccc-c-cc----hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc
Confidence            3455566666665  443 2 22    34556666666666665  455555555             556666666666


Q ss_pred             Ccc--cCCC
Q 036214           82 LTG--SISL   88 (90)
Q Consensus        82 l~~--~~p~   88 (90)
                      +++  .+|.
T Consensus       408 l~~~~~iP~  416 (454)
T 1jl5_A          408 LREFPDIPE  416 (454)
T ss_dssp             ---------
T ss_pred             CCccccchh
Confidence            665  4543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.42  E-value=2.5e-07  Score=61.51  Aligned_cols=61  Identities=16%  Similarity=0.165  Sum_probs=42.2

Q ss_pred             CCCcEEeccCCccccccccchhhhhcCcccc-------cEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcccCC
Q 036214           18 SSLKYLSLSGSTIGINSSMILDQGLCSLVHL-------QELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTGSIS   87 (90)
Q Consensus        18 ~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l-------~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~~~p   87 (90)
                      ++|+.|++++|.  ++. + |.  +..  +|       +.+++++|.++ .+|..+..+++|+.|++++|.+++.+|
T Consensus       180 ~~L~~L~Ls~N~--L~~-l-p~--~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p  247 (571)
T 3cvr_A          180 ESLEALDVSTNL--LES-L-PA--VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIR  247 (571)
T ss_dssp             TTCCEEECCSSC--CSS-C-CC--CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred             CCCCEEECcCCC--CCc-h-hh--HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence            466677777776  543 2 32  221  55       88888888888 678777778889999999998887655

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.38  E-value=8e-07  Score=57.47  Aligned_cols=68  Identities=28%  Similarity=0.313  Sum_probs=57.1

Q ss_pred             cchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCccc
Q 036214            8 SFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTGS   85 (90)
Q Consensus         8 ~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~~   85 (90)
                      ..+..+.. +++|++|++++|.  +.+.  |  .+..+++|+.+++++|.+++ +|  +..+++|++|++++|.+.+.
T Consensus        33 ~~~~~~~~-l~~L~~L~Ls~n~--l~~~--~--~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~  100 (457)
T 3bz5_A           33 TDTISEEQ-LATLTSLDCHNSS--ITDM--T--GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL  100 (457)
T ss_dssp             TSEEEHHH-HTTCCEEECCSSC--CCCC--T--TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC
T ss_pred             ccccChhH-cCCCCEEEccCCC--cccC--h--hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee
Confidence            33445667 8999999999999  7763  3  57889999999999999995 44  88899999999999998873

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.31  E-value=6.9e-07  Score=57.03  Aligned_cols=71  Identities=27%  Similarity=0.345  Sum_probs=35.5

Q ss_pred             chhHHHhhCCCCcEEeccCCccccccccchhhhhcC-----cccccEEEccCCcCCCc----chhhhhcCCCccEEeccC
Q 036214            9 FLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCS-----LVHLQELYIASNDLRGS----LPWCLANMTSLRILDVSY   79 (90)
Q Consensus         9 ~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~-----l~~l~~l~l~~n~~~~~----~p~~~~~l~~L~~l~l~~   79 (90)
                      ++..+.. +++|+.|++++|.  +.... +. .+..     .+.|+.+++++|.+++.    ++..+..+++|+.+++++
T Consensus       276 l~~~l~~-~~~L~~L~Ls~n~--i~~~~-~~-~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~  350 (461)
T 1z7x_W          276 LCRVLRA-KESLKELSLAGNE--LGDEG-AR-LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISN  350 (461)
T ss_dssp             HHHHHHH-CTTCCEEECTTCC--CHHHH-HH-HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCS
T ss_pred             HHHHHhh-CCCcceEECCCCC--CchHH-HH-HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccC
Confidence            4444555 6666666666666  43321 21 1111     13555555555555532    334444555566666665


Q ss_pred             CcCcc
Q 036214           80 NQLTG   84 (90)
Q Consensus        80 n~l~~   84 (90)
                      |.+.+
T Consensus       351 n~i~~  355 (461)
T 1z7x_W          351 NRLED  355 (461)
T ss_dssp             SBCHH
T ss_pred             Ccccc
Confidence            55543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.27  E-value=1.1e-06  Score=54.71  Aligned_cols=73  Identities=12%  Similarity=0.064  Sum_probs=55.4

Q ss_pred             cchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcch-hhhhcCCCccE-EeccCCcCccc
Q 036214            8 SFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLP-WCLANMTSLRI-LDVSYNQLTGS   85 (90)
Q Consensus         8 ~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p-~~~~~l~~L~~-l~l~~n~l~~~   85 (90)
                      .+|..+.   +++++|++++|.  ++... +. .|..+++|+.+++++|.+.+.+| ..|.+++++.. +.+..|++.+.
T Consensus        23 ~iP~~l~---~~l~~L~Ls~N~--i~~i~-~~-~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l   95 (350)
T 4ay9_X           23 EIPSDLP---RNAIELRFVLTK--LRVIQ-KG-AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI   95 (350)
T ss_dssp             SCCTTCC---TTCSEEEEESCC--CSEEC-TT-SSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEE
T ss_pred             ccCcCcC---CCCCEEEccCCc--CCCcC-HH-HHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccccc
Confidence            5676543   479999999999  77643 34 68999999999999999875666 45788888765 56667888775


Q ss_pred             CC
Q 036214           86 IS   87 (90)
Q Consensus        86 ~p   87 (90)
                      .|
T Consensus        96 ~~   97 (350)
T 4ay9_X           96 NP   97 (350)
T ss_dssp             CT
T ss_pred             Cc
Confidence            44

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.26  E-value=2.6e-06  Score=56.73  Aligned_cols=55  Identities=31%  Similarity=0.382  Sum_probs=24.4

Q ss_pred             CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCc
Q 036214           17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLT   83 (90)
Q Consensus        17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~   83 (90)
                      +++|+.|++++|.  +++ + |.    .+++|+.+++++|.+++ +|. +.  ++|+.|++++|.++
T Consensus       139 l~~L~~L~Ls~N~--l~~-l-p~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~  193 (571)
T 3cvr_A          139 PALLEYINADNNQ--LTM-L-PE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE  193 (571)
T ss_dssp             CTTCCEEECCSSC--CSC-C-CC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS
T ss_pred             CccccEEeCCCCc--cCc-C-CC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC
Confidence            4445555555555  333 1 21    23344555555555442 333 22  44455555555444

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.19  E-value=7.7e-06  Score=49.86  Aligned_cols=71  Identities=27%  Similarity=0.347  Sum_probs=52.5

Q ss_pred             CCcCCc--cchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcch-------hhhhcCCCc
Q 036214            2 RSALNT--SFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLP-------WCLANMTSL   72 (90)
Q Consensus         2 ~n~~~~--~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p-------~~~~~l~~L   72 (90)
                      +|.+.+  .+|..+.. +++|+.|+|++|.  +.+..... .+..+ .|+.|++++|.+.+.+|       ..+..+++|
T Consensus       179 ~N~l~~l~~l~~~~~~-l~~L~~L~Ls~N~--i~~~~~l~-~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L  253 (267)
T 3rw6_A          179 NNRLYRLDDMSSIVQK-APNLKILNLSGNE--LKSERELD-KIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKL  253 (267)
T ss_dssp             TSCCCCCGGGTTHHHH-STTCCEEECTTSC--CCSGGGGG-GGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTC
T ss_pred             CCCCCCCccchhHHhh-CCCCCEEECCCCc--cCCchhhh-hcccC-CcceEEccCCcCccccCcchhHHHHHHHHCccc
Confidence            577777  55666677 9999999999999  77642122 34444 89999999999986554       246778889


Q ss_pred             cEEec
Q 036214           73 RILDV   77 (90)
Q Consensus        73 ~~l~l   77 (90)
                      +.|+-
T Consensus       254 ~~LDg  258 (267)
T 3rw6_A          254 LRLDG  258 (267)
T ss_dssp             CEESS
T ss_pred             CeECC
Confidence            88753

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.15  E-value=2.7e-06  Score=55.86  Aligned_cols=75  Identities=17%  Similarity=0.092  Sum_probs=47.3

Q ss_pred             cchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCc-chhhhhcCCCccEEeccCCcCccc
Q 036214            8 SFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGS-LPWCLANMTSLRILDVSYNQLTGS   85 (90)
Q Consensus         8 ~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~-~p~~~~~l~~L~~l~l~~n~l~~~   85 (90)
                      ..+..+...+++|++|++++|.  +++.. ....+..+++|+.+++++|.+++. .+.....+++|+.|++++|+++..
T Consensus       453 ~~~~~~~~~~~~L~~L~L~~n~--l~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          453 LGLSYIGQYSPNVRWMLLGYVG--ESDEG-LMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             HHHHHHHHSCTTCCEEEECSCC--SSHHH-HHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             HHHHHHHHhCccceEeeccCCC--CCHHH-HHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            3334444336677777777777  55422 221346677788888888887643 344455678888888888877653

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.97  E-value=1.1e-05  Score=51.10  Aligned_cols=64  Identities=28%  Similarity=0.307  Sum_probs=32.1

Q ss_pred             CCCCcEEeccCCccccccccch---hhhhcCcccccEEEccCCcCCCc----chhhhhcCCCccEEeccCCcCc
Q 036214           17 MSSLKYLSLSGSTIGINSSMIL---DQGLCSLVHLQELYIASNDLRGS----LPWCLANMTSLRILDVSYNQLT   83 (90)
Q Consensus        17 l~~l~~L~l~~n~~~~~~~~~~---~~~~~~l~~l~~l~l~~n~~~~~----~p~~~~~l~~L~~l~l~~n~l~   83 (90)
                      .++|++|++++|.  +.... .   ...+...+.|+.+++++|.+++.    +...+...++|+.|++++|.+.
T Consensus       182 ~~~L~~L~Ls~N~--l~~~g-~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          182 NTSVTHLSLLHTG--LGDEG-LELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             CSSCCEEECTTSS--CHHHH-HHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             CCCcCEEeCCCCC--CCcHH-HHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence            5556666666666  33211 1   00233445566666666666532    2223334456666666666654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.93  E-value=7e-06  Score=51.94  Aligned_cols=65  Identities=22%  Similarity=0.293  Sum_probs=36.1

Q ss_pred             CCCCcEEeccCCccccccccchh---hhhcCcccccEEEccCCcCCCc----chhhhhcCCCccEEeccCCcCcc
Q 036214           17 MSSLKYLSLSGSTIGINSSMILD---QGLCSLVHLQELYIASNDLRGS----LPWCLANMTSLRILDVSYNQLTG   84 (90)
Q Consensus        17 l~~l~~L~l~~n~~~~~~~~~~~---~~~~~l~~l~~l~l~~n~~~~~----~p~~~~~l~~L~~l~l~~n~l~~   84 (90)
                      .+.|+.|++++|.  ++... ..   ..+...+.|+.+++++|.+++.    ++..+...++|+.|++++|.++.
T Consensus       154 ~~~L~~L~Ls~n~--l~~~~-~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~  225 (372)
T 3un9_A          154 QCQITTLRLSNNP--LTAAG-VAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD  225 (372)
T ss_dssp             TCCCCEEECCSSC--CHHHH-HHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred             CCccceeeCCCCC--CChHH-HHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence            3556667776666  43211 11   0234456677777777766532    23445555667777777776653

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=97.83  E-value=4.7e-05  Score=51.22  Aligned_cols=57  Identities=39%  Similarity=0.428  Sum_probs=35.6

Q ss_pred             CCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcccCC
Q 036214           18 SSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTGSIS   87 (90)
Q Consensus        18 ~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~~~p   87 (90)
                      ++|+.|++++|.  +++ + |.    .+++|+.+++++|.++ .+|.   .+++|+.|++++|.++ .+|
T Consensus       221 ~~L~~L~Ls~N~--L~~-l-p~----~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp  277 (622)
T 3g06_A          221 SGLKELIVSGNR--LTS-L-PV----LPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLP  277 (622)
T ss_dssp             TTCCEEECCSSC--CSC-C-CC----CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCC
T ss_pred             CCCCEEEccCCc--cCc-C-CC----CCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCC
Confidence            456666666666  544 2 32    3356777777777776 4554   4566777777777776 444

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.78  E-value=2e-05  Score=51.67  Aligned_cols=38  Identities=16%  Similarity=0.103  Sum_probs=17.2

Q ss_pred             cccccEEEccCCcCCCcchh-hhhcCCCccEEeccCCcC
Q 036214           45 LVHLQELYIASNDLRGSLPW-CLANMTSLRILDVSYNQL   82 (90)
Q Consensus        45 l~~l~~l~l~~n~~~~~~p~-~~~~l~~L~~l~l~~n~l   82 (90)
                      +++|+.+++++|.+++.... ....+++|+.|++++|.+
T Consensus       480 ~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          480 CDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             CTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             CCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            44555555555555322221 222344555555555544

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.71  E-value=5.2e-05  Score=49.79  Aligned_cols=65  Identities=15%  Similarity=0.079  Sum_probs=37.9

Q ss_pred             CCCCcEEeccCCcccccccc---chhhhhcCcccccEEEccCCcCC----CcchhhhhcCCCccEEeccCCcCcc
Q 036214           17 MSSLKYLSLSGSTIGINSSM---ILDQGLCSLVHLQELYIASNDLR----GSLPWCLANMTSLRILDVSYNQLTG   84 (90)
Q Consensus        17 l~~l~~L~l~~n~~~~~~~~---~~~~~~~~l~~l~~l~l~~n~~~----~~~p~~~~~l~~L~~l~l~~n~l~~   84 (90)
                      +++|++|++++|.  +.+..   .+. ....++.|+.++++.|.++    ..++..+..+++|+.|++++|.+.+
T Consensus       163 ~~~L~~L~L~~~~--~~~~~~~~l~~-~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~  234 (592)
T 3ogk_B          163 CRKIKTLLMEESS--FSEKDGKWLHE-LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE  234 (592)
T ss_dssp             CTTCSEEECTTCE--EECCCSHHHHH-HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG
T ss_pred             CCCCCEEECcccc--ccCcchhHHHH-HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH
Confidence            6777777777776  54331   011 2344566777777776665    2344445566777777777666543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.68  E-value=5.3e-05  Score=43.43  Aligned_cols=14  Identities=29%  Similarity=0.311  Sum_probs=6.5

Q ss_pred             ccccEEEccCCcCC
Q 036214           46 VHLQELYIASNDLR   59 (90)
Q Consensus        46 ~~l~~l~l~~n~~~   59 (90)
                      +.|+.|++++|.++
T Consensus        93 ~~L~~L~L~~N~i~  106 (185)
T 1io0_A           93 NTLKSLNVESNFIS  106 (185)
T ss_dssp             SSCCEEECCSSCCC
T ss_pred             CCcCEEECcCCcCC
Confidence            34444444444444

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.57  E-value=7.1e-05  Score=49.10  Aligned_cols=66  Identities=18%  Similarity=0.205  Sum_probs=45.6

Q ss_pred             HHhhCCCCcEEeccCCccccccccchhhhhcC-cccccEEEccCCcCCCcchhhh-hcCCCccEEeccCCcCcc
Q 036214           13 IGESMSSLKYLSLSGSTIGINSSMILDQGLCS-LVHLQELYIASNDLRGSLPWCL-ANMTSLRILDVSYNQLTG   84 (90)
Q Consensus        13 ~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~-l~~l~~l~l~~n~~~~~~p~~~-~~l~~L~~l~l~~n~l~~   84 (90)
                      +.. +++|+.|++++ .  ++... +. .+.. +++|+.++++.|.+++.....+ ..+++|+.|++++|.+++
T Consensus       428 ~~~-~~~L~~L~L~~-~--l~~~~-~~-~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~  495 (594)
T 2p1m_B          428 VEH-CKDLRRLSLSG-L--LTDKV-FE-YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGD  495 (594)
T ss_dssp             HHH-CTTCCEEECCS-S--CCHHH-HH-HHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCH
T ss_pred             Hhh-CCCccEEeecC-c--ccHHH-HH-HHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcH
Confidence            444 77788888866 4  44433 33 3333 6778999999998875544444 668899999999998754

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.55  E-value=0.00016  Score=41.46  Aligned_cols=70  Identities=24%  Similarity=0.218  Sum_probs=50.7

Q ss_pred             hhHHHhhCCCCcEEeccCCccccccccchh---hhhcCcccccEEEc--cCCcCCCc----chhhhhcCCCccEEeccCC
Q 036214           10 LQSIGESMSSLKYLSLSGSTIGINSSMILD---QGLCSLVHLQELYI--ASNDLRGS----LPWCLANMTSLRILDVSYN   80 (90)
Q Consensus        10 p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~---~~~~~l~~l~~l~l--~~n~~~~~----~p~~~~~l~~L~~l~l~~n   80 (90)
                      .+.+.. .++|++|++++|.  +.... ..   ..+.....|+.+++  ++|.++..    +...+...+.|+.|++++|
T Consensus        86 ~~~L~~-n~~L~~L~L~~N~--i~~~g-~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n  161 (185)
T 1io0_A           86 AEMLKV-NNTLKSLNVESNF--ISGSG-ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  161 (185)
T ss_dssp             HHHHHH-CSSCCEEECCSSC--CCHHH-HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHh-CCCcCEEECcCCc--CCHHH-HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence            344444 6789999999999  55421 11   14556678999999  88999853    3455666789999999999


Q ss_pred             cCc
Q 036214           81 QLT   83 (90)
Q Consensus        81 ~l~   83 (90)
                      .+.
T Consensus       162 ~i~  164 (185)
T 1io0_A          162 QQG  164 (185)
T ss_dssp             SHH
T ss_pred             CCC
Confidence            875

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.54  E-value=0.00016  Score=41.58  Aligned_cols=65  Identities=18%  Similarity=0.191  Sum_probs=36.2

Q ss_pred             HHhhCCCCcEEeccCCccccccccchhhhhcCc----ccccEEEccCCc-CCCcchhhhhcCCCccEEeccCCc
Q 036214           13 IGESMSSLKYLSLSGSTIGINSSMILDQGLCSL----VHLQELYIASND-LRGSLPWCLANMTSLRILDVSYNQ   81 (90)
Q Consensus        13 ~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l----~~l~~l~l~~n~-~~~~~p~~~~~l~~L~~l~l~~n~   81 (90)
                      +.. +++|+.|++++|.- ++... .. .+..+    ++|+.|+++++. +++.--..+..+++|+.|+++++.
T Consensus        81 L~~-~~~L~~L~L~~C~~-ItD~g-L~-~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A           81 MEG-LQYVEKIRLCKCHY-IEDGC-LE-RLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             GTT-CSCCCEEEEESCTT-CCHHH-HH-HHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCT
T ss_pred             hcC-CCCCCEEEeCCCCc-cCHHH-HH-HHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCC
Confidence            444 66777777777640 22211 22 33332    257777777763 664333445667777777777764

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.51  E-value=0.00021  Score=44.10  Aligned_cols=62  Identities=11%  Similarity=0.032  Sum_probs=38.6

Q ss_pred             CCCCcEEeccCCccccccccchhhhhcCccccc-EEEccCCcCCCcchhhhhcCCCccEEeccCCcCcc
Q 036214           17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQ-ELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTG   84 (90)
Q Consensus        17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~-~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~   84 (90)
                      +.+|+.+++..|-   .... .. .|..+..|+ .+++.. .++..-+..|..+.+|+.+++.+|.+..
T Consensus       249 ~~~L~~l~l~~ni---~~I~-~~-aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~  311 (329)
T 3sb4_A          249 KKYLLKIKLPHNL---KTIG-QR-VFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITT  311 (329)
T ss_dssp             CTTCCEEECCTTC---CEEC-TT-TTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCE
T ss_pred             CCCCCEEECCccc---ceeh-HH-HhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCc
Confidence            6677777776653   2221 33 566777777 777766 5553444667777777777777666654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.48  E-value=0.00052  Score=37.37  Aligned_cols=34  Identities=26%  Similarity=0.347  Sum_probs=15.1

Q ss_pred             ccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214           48 LQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ   81 (90)
Q Consensus        48 l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~   81 (90)
                      ++.|+|++|+++..-+..|..+++|+.+++.+|.
T Consensus        33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             CCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence            4444444444442222334444444444444444

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.37  E-value=0.0001  Score=46.58  Aligned_cols=64  Identities=19%  Similarity=0.330  Sum_probs=34.8

Q ss_pred             CCCCcEEeccCCccccccccchhh--hhcCcccccEEEccCCcCCCc----chhhhhcCCCccEEeccCCcCc
Q 036214           17 MSSLKYLSLSGSTIGINSSMILDQ--GLCSLVHLQELYIASNDLRGS----LPWCLANMTSLRILDVSYNQLT   83 (90)
Q Consensus        17 l~~l~~L~l~~n~~~~~~~~~~~~--~~~~l~~l~~l~l~~n~~~~~----~p~~~~~l~~L~~l~l~~n~l~   83 (90)
                      +++|+.|++.+|.  +.... +..  ....+++|+.|+++.|.+++.    ++..+..+++|+.|+++.|.++
T Consensus       251 ~p~Lr~L~L~~~~--i~~~~-~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          251 FPNLKWLGIVDAE--EQNVV-VEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             CTTCCEEEEESCT--THHHH-HHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             CCCcCEEeCCCCC--CchHH-HHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            4566666666666  43221 110  112456677777777766642    2222344566777777766654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.15  E-value=0.0008  Score=41.47  Aligned_cols=63  Identities=10%  Similarity=0.085  Sum_probs=49.3

Q ss_pred             chhH-HHhhCCCCc-EEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEec
Q 036214            9 FLQS-IGESMSSLK-YLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDV   77 (90)
Q Consensus         9 ~p~~-~~~~l~~l~-~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l   77 (90)
                      +++. |.+ +.+|+ .+++.. .  +.... .. .|..+..|+.+++..|.++..-+..|.++++|+.++.
T Consensus       264 I~~~aF~~-~~~L~~~l~l~~-~--l~~I~-~~-aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          264 IGQRVFSN-CGRLAGTLELPA-S--VTAIE-FG-AFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             ECTTTTTT-CTTCCEEEEECT-T--CCEEC-TT-TTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             ehHHHhhC-ChhccEEEEEcc-c--ceEEc-hh-hhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            4444 455 99999 999988 5  44433 45 8999999999999999998555568999999998864

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.09  E-value=0.00058  Score=39.24  Aligned_cols=61  Identities=13%  Similarity=0.157  Sum_probs=46.0

Q ss_pred             CCcEEeccCCccccccccchhhhhcCcccccEEEccCCc-CCCcchhhhhcC----CCccEEeccCCc-Cc
Q 036214           19 SLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASND-LRGSLPWCLANM----TSLRILDVSYNQ-LT   83 (90)
Q Consensus        19 ~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~-~~~~~p~~~~~l----~~L~~l~l~~n~-l~   83 (90)
                      .|+.||++++.  ++... .. .+..+++|+.|+++++. +++.--..+..+    ++|+.|++++|. ++
T Consensus        62 ~L~~LDLs~~~--Itd~G-L~-~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT  128 (176)
T 3e4g_A           62 KIQAIDATDSC--IMSIG-FD-HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT  128 (176)
T ss_dssp             CEEEEEEESCC--CCGGG-GG-GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred             eEeEEeCcCCC--ccHHH-HH-HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence            58999999999  65443 44 67889999999999985 775443455554    369999999985 54

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.01  E-value=0.00092  Score=36.36  Aligned_cols=45  Identities=20%  Similarity=0.184  Sum_probs=35.0

Q ss_pred             cchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCC
Q 036214            8 SFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLR   59 (90)
Q Consensus         8 ~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~   59 (90)
                      .+|..+.   ..++.|+|++|.  ++... +. .|..++.|+.+++.+|.+.
T Consensus        24 ~vP~~lp---~~l~~L~Ls~N~--l~~l~-~~-~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           24 SLPTAFP---VDTTELVLTGNN--LTALP-PG-LLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TSCSCCC---TTCSEEECTTSC--CSSCC-TT-TGGGCTTCCEEECCSSCCB
T ss_pred             cCCCCCC---cCCCEEECCCCc--CCccC-hh-hhhhccccCEEEecCCCee
Confidence            5565533   379999999999  77653 44 7888999999999999765

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.11  E-value=0.0087  Score=34.93  Aligned_cols=60  Identities=18%  Similarity=0.130  Sum_probs=26.9

Q ss_pred             CCCcEEeccCCccccccccchh---hhhcCcccccEEEccCCcCCCcch----hhhhcCCCccEEeccCC
Q 036214           18 SSLKYLSLSGSTIGINSSMILD---QGLCSLVHLQELYIASNDLRGSLP----WCLANMTSLRILDVSYN   80 (90)
Q Consensus        18 ~~l~~L~l~~n~~~~~~~~~~~---~~~~~l~~l~~l~l~~n~~~~~~p----~~~~~l~~L~~l~l~~n   80 (90)
                      .+|+.|+|++|.  +.... ..   ..+..-..|+.|+++.|.+++.-.    +.+..-..|+.|++++|
T Consensus        70 ~~L~~L~L~~n~--igd~g-a~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A           70 KHIEKFSLANTA--ISDSE-ARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             SCCCEEECTTSC--CBHHH-HTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             CCcCEEEccCCC--CChHH-HHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence            455666666665  33211 11   012223446666666666653222    22223344666666543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=95.85  E-value=0.018  Score=36.80  Aligned_cols=40  Identities=15%  Similarity=0.051  Sum_probs=17.7

Q ss_pred             hhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcC
Q 036214           41 GLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQL   82 (90)
Q Consensus        41 ~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l   82 (90)
                      .|..+..|+.+.+..+ ++..-...|..+ +|+.+.+.+|.+
T Consensus       318 aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~  357 (401)
T 4fdw_A          318 LLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTP  357 (401)
T ss_dssp             TTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSC
T ss_pred             hhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCC
Confidence            3444444444444332 331223344444 555555555443

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.30  E-value=0.027  Score=32.87  Aligned_cols=65  Identities=23%  Similarity=0.368  Sum_probs=40.6

Q ss_pred             CCCCcEEeccCC-cccccccc--c-hhhhhcCcccccEEEccCCcCCCc----chhhhhcCCCccEEeccCCcCcc
Q 036214           17 MSSLKYLSLSGS-TIGINSSM--I-LDQGLCSLVHLQELYIASNDLRGS----LPWCLANMTSLRILDVSYNQLTG   84 (90)
Q Consensus        17 l~~l~~L~l~~n-~~~~~~~~--~-~~~~~~~l~~l~~l~l~~n~~~~~----~p~~~~~l~~L~~l~l~~n~l~~   84 (90)
                      -+.|+.|+++++ .  +....  . .. .+..-..|+.|+++.|++.+.    +.+.+..-..|+.|+++.|.+..
T Consensus        40 n~~L~~L~L~~nn~--igd~ga~~la~-aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~  112 (197)
T 1pgv_A           40 DTDLKEVNINNMKR--VSKERIRSLIE-AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP  112 (197)
T ss_dssp             CSSCCEEECTTCCS--SCHHHHHHHHH-HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred             CCCccEEECCCCCC--CCHHHHHHHHH-HHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence            356888888875 6  33211  0 11 345556788888888888743    33344455678888888887754

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=95.27  E-value=0.049  Score=34.74  Aligned_cols=64  Identities=19%  Similarity=0.081  Sum_probs=45.5

Q ss_pred             HHHhhCCCCcEEeccCCccccc----cccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCC
Q 036214           12 SIGESMSSLKYLSLSGSTIGIN----SSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYN   80 (90)
Q Consensus        12 ~~~~~l~~l~~L~l~~n~~~~~----~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n   80 (90)
                      .|.+ +.+|+.+.+.++.  ..    ..+... .|..+.+|+.+.+. +.++..-...|..+.+|+.+.+..|
T Consensus       266 aF~~-c~~L~~l~l~~~~--~~~~~~~~I~~~-aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~  333 (401)
T 4fdw_A          266 AFYY-CPELAEVTTYGST--FNDDPEAMIHPY-CLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN  333 (401)
T ss_dssp             TTTT-CTTCCEEEEESSC--CCCCTTCEECTT-TTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT
T ss_pred             HhhC-CCCCCEEEeCCcc--ccCCcccEECHH-HhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc
Confidence            3455 8899999998877  43    012033 78888899999988 4566344567888899999988544

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=94.86  E-value=0.13  Score=32.44  Aligned_cols=67  Identities=18%  Similarity=0.196  Sum_probs=42.1

Q ss_pred             chhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214            9 FLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ   81 (90)
Q Consensus         9 ~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~   81 (90)
                      +++..+..+.+|+.+.+..+-   +... .. .|..+.+|+.+.+..+ ++..-...|.++.+|+.+++.++.
T Consensus       302 I~~~aF~~c~~L~~i~lp~~v---~~I~-~~-aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          302 LPESVFAGCISLKSIDIPEGI---TQIL-DD-AFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             ECTTTTTTCTTCCEEECCTTC---CEEC-TT-TTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred             cCceeecCCCCcCEEEeCCcc---cEeh-Hh-HhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence            333333337778888876543   2221 33 6777888888888654 553335678888888888887653

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=94.40  E-value=0.12  Score=32.60  Aligned_cols=17  Identities=24%  Similarity=0.448  Sum_probs=10.2

Q ss_pred             hHHHhhCCCCcEEeccCC
Q 036214           11 QSIGESMSSLKYLSLSGS   28 (90)
Q Consensus        11 ~~~~~~l~~l~~L~l~~n   28 (90)
                      ..+.. ++.|+.|.+.++
T Consensus       166 ~ll~~-~P~L~~L~L~g~  182 (362)
T 2ra8_A          166 PVLDA-MPLLNNLKIKGT  182 (362)
T ss_dssp             HHHHT-CTTCCEEEEECC
T ss_pred             HHHhc-CCCCcEEEEeCC
Confidence            33344 667777777665

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=93.87  E-value=0.087  Score=32.85  Aligned_cols=56  Identities=16%  Similarity=0.220  Sum_probs=30.9

Q ss_pred             CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEec
Q 036214           17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDV   77 (90)
Q Consensus        17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l   77 (90)
                      +.+|+.+.+..+.  +.... .. .|..+..|+.+.+..+ ++..-...|.++.+|+.+.+
T Consensus       285 c~~L~~i~l~~~~--i~~I~-~~-aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~i  340 (379)
T 4h09_A          285 CSNLTKVVMDNSA--IETLE-PR-VFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISY  340 (379)
T ss_dssp             CTTCCEEEECCTT--CCEEC-TT-TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred             ccccccccccccc--cceeh-hh-hhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence            5666666666655  33322 33 5666666777766543 43222345666666666555

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=93.52  E-value=0.083  Score=33.26  Aligned_cols=57  Identities=12%  Similarity=0.079  Sum_probs=31.5

Q ss_pred             CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccC
Q 036214           17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSY   79 (90)
Q Consensus        17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~   79 (90)
                      +.+|+.+++..+-   .... .. .|..+.+|+.+.+..+ ++..-...|..+.+|+.+.+..
T Consensus       319 c~~L~~i~lp~~v---~~I~-~~-aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          319 CTSLVSIDLPYLV---EEIG-KR-SFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK  375 (394)
T ss_dssp             CTTCCEECCCTTC---CEEC-TT-TTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred             CCCCCEEEeCCcc---cEEh-HH-hccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence            5666666665332   2211 22 5666666777766554 4423334566677777666643

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=90.23  E-value=0.9  Score=28.23  Aligned_cols=58  Identities=10%  Similarity=0.119  Sum_probs=36.7

Q ss_pred             CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccC
Q 036214           17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSY   79 (90)
Q Consensus        17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~   79 (90)
                      +..++.+.+..+-   .... .. .|..+.+|+.+.+..+.++..-...|.++.+|+.+.+..
T Consensus       262 ~~~l~~i~l~~~i---~~i~-~~-aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~  319 (379)
T 4h09_A          262 CTALKTLNFYAKV---KTVP-YL-LCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT  319 (379)
T ss_dssp             CTTCCEEEECCCC---SEEC-TT-TTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT
T ss_pred             eehhccccccccc---eecc-cc-ccccccccccccccccccceehhhhhcCCCCCCEEEcCc
Confidence            4556666554332   2211 22 577778888888887777633446778888888888754

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=86.14  E-value=1.3  Score=27.87  Aligned_cols=61  Identities=10%  Similarity=0.117  Sum_probs=36.5

Q ss_pred             HHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcC
Q 036214           13 IGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQL   82 (90)
Q Consensus        13 ~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l   82 (90)
                      |.+ +.+|+.+.+..+-   .... .. .|..+.+|+.+++.++...   -..+..+..|+.+.+..+.+
T Consensus       330 F~~-C~~L~~i~ip~sv---~~I~-~~-aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          330 FAG-CEQLERIAIPSSV---TKIP-ES-AFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             TTT-CTTCCEEEECTTC---CBCC-GG-GGTTCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred             hhC-CCCCCEEEECccc---CEEh-Hh-HhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence            445 8999999997543   3322 34 7999999999999887543   24566677888887766543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=86.11  E-value=1.3  Score=27.77  Aligned_cols=58  Identities=17%  Similarity=0.063  Sum_probs=40.6

Q ss_pred             CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCC
Q 036214           17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYN   80 (90)
Q Consensus        17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n   80 (90)
                      +..|+.+.+..+-   .... .. .|..+..|+.+++..+ ++..-...|.++.+|+.+.+..+
T Consensus       296 ~~~L~~i~l~~~i---~~I~-~~-aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~  353 (394)
T 4fs7_A          296 CSSLTEVKLLDSV---KFIG-EE-AFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS  353 (394)
T ss_dssp             CTTCCEEEECTTC---CEEC-TT-TTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred             ccccccccccccc---ceec-hh-hhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence            7788888886543   2222 33 6888889999988754 55333567888999999888654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	90
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.003

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 40.9 bits (94), Expect = 4e-06
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 52  YIASNDLRGSLPWCLANMTSLRILDVSYNQLTGSI 86
            + +N + G+LP  L  +  L  L+VS+N L G I
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 37.0 bits (84), Expect = 8e-05
 Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 1/58 (1%)

Query: 33  NSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTGSISLSP 90
                L QGL  L  L  L ++ N+L G +P    N+    +   + N+      L  
Sbjct: 255 RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPLPA 311

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 7e-06
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)

Query: 42  LCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTGSISLS 89
           + SL  LQ L+ A+N +       LAN+T++  L   +NQ++    L+
Sbjct: 325 VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTPLA 370

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.9 bits (84), Expect = 1e-04
 Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 8/66 (12%)

Query: 15  ESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRI 74
            S++ L+ L  + + +   SS      L +L ++  L    N +    P  LAN+T +  
Sbjct: 326 SSLTKLQRLFFANNKVSDVSS------LANLTNINWLSAGHNQISDLTP--LANLTRITQ 377

Query: 75  LDVSYN 80
           L ++  
Sbjct: 378 LGLNDQ 383

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 3e-05
 Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 5/86 (5%)

Query: 6   NTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWC 65
                Q +G+  S L+ L L+   +  +S   L   L +   L+EL +++N L  +    
Sbjct: 357 VRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQ 416

Query: 66  LA-----NMTSLRILDVSYNQLTGSI 86
           L          L  L +     +  +
Sbjct: 417 LVESVRQPGCLLEQLVLYDIYWSEEM 442

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (79), Expect = 4e-04
 Identities = 11/82 (13%), Positives = 25/82 (30%), Gaps = 5/82 (6%)

Query: 5  LNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPW 64
          L+ +    +   +   + + L    +       +   L     L EL + SN+L      
Sbjct: 14 LSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVH 73

Query: 65 CLA-----NMTSLRILDVSYNQ 81
          C+          ++ L +    
Sbjct: 74 CVLQGLQTPSCKIQKLSLQNCC 95

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.2 bits (76), Expect = 0.001
 Identities = 11/71 (15%), Positives = 23/71 (32%), Gaps = 7/71 (9%)

Query: 19 SLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRG----SLPWCLANMTSLRI 74
           ++ L +    +   S     + L  L   Q + +    L       +   L    +L  
Sbjct: 3  DIQSLDIQCEEL---SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 59

Query: 75 LDVSYNQLTGS 85
          L++  N+L   
Sbjct: 60 LNLRSNELGDV 70

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 33.1 bits (74), Expect = 0.002
 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 4/67 (5%)

Query: 18 SSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDV 77
               L L  + I    + I D    +L +L  L + +N +    P   A +  L  L +
Sbjct: 31 PDTALLDLQNNKI----TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 86

Query: 78 SYNQLTG 84
          S NQL  
Sbjct: 87 SKNQLKE 93

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 32.3 bits (72), Expect = 0.003
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 3/42 (7%)

Query: 40  QGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ 81
             L SL +L E+++ +N +    P  LAN ++L I+ ++ NQ
Sbjct: 189 SPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT-NQ 227

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	90
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.35
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.33
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.28
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.25
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.15
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.11
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.09
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.05
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.04
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.02
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.01
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.99
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.91
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.88
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.83
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.77
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.74
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.69
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.57
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.49
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.49
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.44
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.42
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.42
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.34
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.33
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.31
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.28
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.17
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.84
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.75
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.74
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	97.66
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.64
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.63
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	97.55
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.42
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.15
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.87
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.6
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.39
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	93.2

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.35  E-value=1.3e-12  Score=74.44  Aligned_cols=81  Identities=17%  Similarity=0.253  Sum_probs=56.7

Q ss_pred             CCcCCccchhH-HHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCC
Q 036214            2 RSALNTSFLQS-IGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYN   80 (90)
Q Consensus         2 ~n~~~~~~p~~-~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n   80 (90)
                      +|.+.+.++.. |.. +++|+.|++++|.  +.... +. .+..++.|+.+++++|+++...+..|.++++|++|++++|
T Consensus        38 ~N~i~~~~~~~~f~~-l~~L~~L~L~~N~--i~~~~-~~-~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N  112 (192)
T d1w8aa_          38 DNELGRISSDGLFGR-LPHLVKLELKRNQ--LTGIE-PN-AFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDN  112 (192)
T ss_dssp             SCCCCSBCCSCSGGG-CTTCCEEECCSSC--CCCBC-TT-TTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSS
T ss_pred             CCCCcccccccccCC-CceEeeeeccccc--ccccc-cc-ccccccccceeeeccccccccCHHHHhCCCcccccccCCc
Confidence            46666545444 444 7888888888887  66554 45 6777777888888888887555566777888888888888


Q ss_pred             cCcccCC
Q 036214           81 QLTGSIS   87 (90)
Q Consensus        81 ~l~~~~p   87 (90)
                      .+++..|
T Consensus       113 ~l~~i~~  119 (192)
T d1w8aa_         113 QISCVMP  119 (192)
T ss_dssp             CCCEECT
T ss_pred             cccccCH
Confidence            8776543

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.33  E-value=1.1e-12  Score=79.24  Aligned_cols=80  Identities=24%  Similarity=0.327  Sum_probs=65.5

Q ss_pred             CcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcC
Q 036214            3 SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQL   82 (90)
Q Consensus         3 n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l   82 (90)
                      +...+.+|..+.. ++.++.++++.+.  +.+.  +. .+..++.++.++++.|++++.+|..+.++++|+.|++++|++
T Consensus       207 ~~~~~~~~~~~~~-~~~l~~l~~~~~~--l~~~--~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l  280 (313)
T d1ogqa_         207 NMLEGDASVLFGS-DKNTQKIHLAKNS--LAFD--LG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL  280 (313)
T ss_dssp             SEEEECCGGGCCT-TSCCSEEECCSSE--ECCB--GG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEE
T ss_pred             ccccccccccccc-ccccccccccccc--cccc--cc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcc
Confidence            4455666766666 7888889998888  7665  44 577788899999999999888999899999999999999999


Q ss_pred             cccCCC
Q 036214           83 TGSISL   88 (90)
Q Consensus        83 ~~~~p~   88 (90)
                      +|.+|+
T Consensus       281 ~g~iP~  286 (313)
T d1ogqa_         281 CGEIPQ  286 (313)
T ss_dssp             EEECCC
T ss_pred             cccCCC
Confidence            988886

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.28  E-value=2.1e-12  Score=77.90  Aligned_cols=79  Identities=23%  Similarity=0.395  Sum_probs=37.7

Q ss_pred             cCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCc
Q 036214            4 ALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLT   83 (90)
Q Consensus         4 ~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~   83 (90)
                      .+.|.+|+.+.. +++|++|++++|.  +.+.. +. .+..+..|+.++++.|.+.+.+|..+..++.++.+++++|.+.
T Consensus        88 ~l~g~iP~~i~~-L~~L~~L~Ls~N~--l~~~~-~~-~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~  162 (313)
T d1ogqa_          88 NLVGPIPPAIAK-LTQLHYLYITHTN--VSGAI-PD-FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS  162 (313)
T ss_dssp             TEESCCCGGGGG-CTTCSEEEEEEEC--CEEEC-CG-GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCE
T ss_pred             cccccccccccc-ccccchhhhcccc--ccccc-cc-cccchhhhcccccccccccccCchhhccCcccceeeccccccc
Confidence            344444444444 4444444444444  33332 22 3334444444444444444445555555555666666666665


Q ss_pred             ccCC
Q 036214           84 GSIS   87 (90)
Q Consensus        84 ~~~p   87 (90)
                      +.+|
T Consensus       163 ~~ip  166 (313)
T d1ogqa_         163 GAIP  166 (313)
T ss_dssp             EECC
T ss_pred             cccc
Confidence            5555

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.25  E-value=7.3e-12  Score=71.21  Aligned_cols=79  Identities=19%  Similarity=0.240  Sum_probs=68.1

Q ss_pred             CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214            2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ   81 (90)
Q Consensus         2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~   81 (90)
                      +|.+....+..+.. ++.|++|++++|+  +.... +. .|..+++|+.+++++|+++...+..|..+++|+++++++|.
T Consensus        63 ~N~i~~~~~~~~~~-~~~L~~L~Ls~N~--l~~l~-~~-~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~  137 (192)
T d1w8aa_          63 RNQLTGIEPNAFEG-ASHIQELQLGENK--IKEIS-NK-MFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             SSCCCCBCTTTTTT-CTTCCEEECCSCC--CCEEC-SS-SSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred             cccccccccccccc-ccccceeeecccc--ccccC-HH-HHhCCCcccccccCCccccccCHHHhcCCcccccccccccc
Confidence            56777777777777 9999999999999  77754 55 79999999999999999996667788999999999999998


Q ss_pred             Cccc
Q 036214           82 LTGS   85 (90)
Q Consensus        82 l~~~   85 (90)
                      +...
T Consensus       138 ~~~~  141 (192)
T d1w8aa_         138 FNCN  141 (192)
T ss_dssp             BCCS
T ss_pred             cccc
Confidence            8653

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.15  E-value=1.9e-10  Score=61.37  Aligned_cols=73  Identities=25%  Similarity=0.383  Sum_probs=44.5

Q ss_pred             CcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcch--hhhhcCCCccEEeccCC
Q 036214            3 SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLP--WCLANMTSLRILDVSYN   80 (90)
Q Consensus         3 n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p--~~~~~l~~L~~l~l~~n   80 (90)
                      |.+. .+|+.+.. +++|+.|++++|.  ++..   + .+..+++|+.+++++|+++ .++  ..+..+++|+.+++++|
T Consensus        30 N~l~-~lp~~~~~-l~~L~~L~l~~N~--i~~l---~-~~~~l~~L~~L~l~~N~i~-~~~~~~~l~~~~~L~~L~l~~N  100 (124)
T d1dcea3          30 NRLR-ALPPALAA-LRCLEVLQASDNA--LENV---D-GVANLPRLQELLLCNNRLQ-QSAAIQPLVSCPRLVLLNLQGN  100 (124)
T ss_dssp             SCCC-CCCGGGGG-CTTCCEEECCSSC--CCCC---G-GGTTCSSCCEEECCSSCCC-SSSTTGGGGGCTTCCEEECTTS
T ss_pred             CccC-cchhhhhh-hhccccccccccc--cccc---C-ccccccccCeEECCCCccC-CCCCchhhcCCCCCCEEECCCC
Confidence            4443 45555665 6677777777776  5542   2 4566666777777777666 222  34566667777777777


Q ss_pred             cCcc
Q 036214           81 QLTG   84 (90)
Q Consensus        81 ~l~~   84 (90)
                      +++.
T Consensus       101 ~i~~  104 (124)
T d1dcea3         101 SLCQ  104 (124)
T ss_dssp             GGGG
T ss_pred             cCCc
Confidence            6654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=1.2e-10  Score=64.45  Aligned_cols=69  Identities=25%  Similarity=0.284  Sum_probs=32.1

Q ss_pred             hhHHHhhCCCCcEEeccCC-ccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCc
Q 036214           10 LQSIGESMSSLKYLSLSGS-TIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLT   83 (90)
Q Consensus        10 p~~~~~~l~~l~~L~l~~n-~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~   83 (90)
                      |..+.. ++++++|+++++ .  ++... +. .|..+++|+.+++++|+++...+..|..+++|+.|++++|+++
T Consensus        24 p~~l~~-l~~l~~L~l~~n~~--l~~i~-~~-~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~   93 (156)
T d2ifga3          24 LHHLPG-AENLTELYIENQQH--LQHLE-LR-DLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE   93 (156)
T ss_dssp             TTTSCS-CSCCSEEECCSCSS--CCEEC-GG-GSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS
T ss_pred             cccccC-ccccCeeecCCCcc--ccccC-ch-hhccccccCcceeeccccCCcccccccccccccceeccCCCCc
Confidence            333333 445555555433 3  22221 22 4455555555555555555333444555555555555555554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.09  E-value=4.1e-10  Score=60.06  Aligned_cols=73  Identities=22%  Similarity=0.294  Sum_probs=61.2

Q ss_pred             CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214            2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ   81 (90)
Q Consensus         2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~   81 (90)
                      +|+++ .++ .+.. ++.|++|++++|.  ++. + |. .+..+++|+.+++++|.++ .+| .+..+++|+.+++++|+
T Consensus         7 ~n~l~-~l~-~l~~-l~~L~~L~ls~N~--l~~-l-p~-~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           7 HKDLT-VLC-HLEQ-LLLVTHLDLSHNR--LRA-L-PP-ALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             TSCCS-SCC-CGGG-GTTCCEEECCSSC--CCC-C-CG-GGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSSC
T ss_pred             CCCCC-CCc-cccc-CCCCCEEECCCCc--cCc-c-hh-hhhhhhccccccccccccc-ccC-ccccccccCeEECCCCc
Confidence            46665 334 4667 9999999999999  765 4 66 7889999999999999999 565 48899999999999999


Q ss_pred             Ccc
Q 036214           82 LTG   84 (90)
Q Consensus        82 l~~   84 (90)
                      +..
T Consensus        77 i~~   79 (124)
T d1dcea3          77 LQQ   79 (124)
T ss_dssp             CCS
T ss_pred             cCC
Confidence            875

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=4.8e-10  Score=61.94  Aligned_cols=73  Identities=26%  Similarity=0.278  Sum_probs=58.8

Q ss_pred             CCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCc
Q 036214            5 LNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLT   83 (90)
Q Consensus         5 ~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~   83 (90)
                      +....++.|.+ +++|+.|++++|.  ++... +. .|..+++|+.+++++|+++ .+|........|+.+++++|.+.
T Consensus        44 l~~i~~~~f~~-l~~L~~L~Ls~N~--l~~i~-~~-~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          44 LQHLELRDLRG-LGELRNLTIVKSG--LRFVA-PD-AFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             CCEECGGGSCS-CCCCSEEECCSSC--CCEEC-TT-GGGSCSCCCEEECCSSCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             ccccCchhhcc-ccccCcceeeccc--cCCcc-cc-cccccccccceeccCCCCc-ccChhhhccccccccccCCCccc
Confidence            55444455677 9999999999999  77764 56 7999999999999999999 66655444457999999999874

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=3.1e-10  Score=67.49  Aligned_cols=64  Identities=23%  Similarity=0.293  Sum_probs=31.0

Q ss_pred             CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcc
Q 036214           17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTG   84 (90)
Q Consensus        17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~   84 (90)
                      ++.++.|++++|.  +.... +. .+..++.|+.++++.|++++..|..+..+++|+.+++++|.+.+
T Consensus       152 ~~~L~~L~l~~N~--l~~l~-~~-~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~  215 (284)
T d1ozna_         152 LGNLTHLFLHGNR--ISSVP-ER-AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA  215 (284)
T ss_dssp             CTTCCEEECCSSC--CCEEC-TT-TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred             ccchhhcccccCc--ccccc-hh-hhccccccchhhhhhccccccChhHhhhhhhccccccccccccc
Confidence            4455555555555  44332 22 44444555555555555544444445555555555555555443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=3.4e-10  Score=67.32  Aligned_cols=78  Identities=19%  Similarity=0.212  Sum_probs=59.9

Q ss_pred             CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCc
Q 036214            2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQ   81 (90)
Q Consensus         2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~   81 (90)
                      +|.+.+..+..|.+ ++.|+++++++|.  +.+.. +. .|..+++++.++++.|++.+..+..+..+.+|+.+++++|.
T Consensus       162 ~N~l~~l~~~~f~~-l~~L~~l~l~~N~--l~~i~-~~-~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~  236 (284)
T d1ozna_         162 GNRISSVPERAFRG-LHSLDRLLLHQNR--VAHVH-PH-AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP  236 (284)
T ss_dssp             SSCCCEECTTTTTT-CTTCCEEECCSSC--CCEEC-TT-TTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             cCcccccchhhhcc-ccccchhhhhhcc--ccccC-hh-HhhhhhhcccccccccccccccccccccccccCEEEecCCC
Confidence            45666555556666 8888888888888  66655 66 78888888888888888887777778888888888888887


Q ss_pred             Ccc
Q 036214           82 LTG   84 (90)
Q Consensus        82 l~~   84 (90)
                      +..
T Consensus       237 l~C  239 (284)
T d1ozna_         237 WVC  239 (284)
T ss_dssp             EEC
T ss_pred             CCC
Confidence            764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=5.7e-10  Score=65.95  Aligned_cols=75  Identities=20%  Similarity=0.144  Sum_probs=49.9

Q ss_pred             CcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcC
Q 036214            3 SALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQL   82 (90)
Q Consensus         3 n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l   82 (90)
                      |.+....+..+.. ++.++.+++++|.  +++.. +. .+..+++|+.|++++|+++ .+|..+..+++|+.+++++|.+
T Consensus       134 n~l~~l~~~~~~~-l~~l~~l~l~~N~--l~~~~-~~-~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         134 NELKTLPPGLLTP-TPKLEKLSLANNN--LTELP-AG-LLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             SCCCCCCTTTTTT-CTTCCEEECTTSC--CSCCC-TT-TTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred             cccceeccccccc-cccchhccccccc--ccccC-cc-ccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCC
Confidence            3444333333344 6777777777777  66553 44 5677777777788777777 6777777777777777777765


Q ss_pred             c
Q 036214           83 T   83 (90)
Q Consensus        83 ~   83 (90)
                      .
T Consensus       208 ~  208 (266)
T d1p9ag_         208 L  208 (266)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.99  E-value=6.7e-10  Score=66.45  Aligned_cols=74  Identities=23%  Similarity=0.298  Sum_probs=42.7

Q ss_pred             cCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCc
Q 036214            4 ALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLT   83 (90)
Q Consensus         4 ~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~   83 (90)
                      ...+..+..+.. ++.+++|++++|.  +.+.. +. .+..+++|+.+++++|.++ .+|..+..+++|++|++++|+++
T Consensus       182 ~~~~~~~~~~~~-~~~l~~L~~s~n~--l~~~~-~~-~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~  255 (305)
T d1xkua_         182 KITKVDAASLKG-LNNLAKLGLSFNS--ISAVD-NG-SLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS  255 (305)
T ss_dssp             CCCEECTGGGTT-CTTCCEEECCSSC--CCEEC-TT-TGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred             cCCCCChhHhhc-ccccccccccccc--ccccc-cc-cccccccceeeeccccccc-ccccccccccCCCEEECCCCccC
Confidence            334444444444 5666666666666  55443 33 5555666666666666666 45555666666666666666655

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=3e-09  Score=62.78  Aligned_cols=68  Identities=24%  Similarity=0.247  Sum_probs=52.4

Q ss_pred             CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcccCCCC
Q 036214           17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTGSISLS   89 (90)
Q Consensus        17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~   89 (90)
                      +.+++.+++++|.  +.... +. .+..+..++.+++++|++++..+..+..+++|+.|++++|+++ .+|++
T Consensus       123 l~~l~~L~l~~n~--l~~l~-~~-~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~  190 (266)
T d1p9ag_         123 LGELQELYLKGNE--LKTLP-PG-LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKG  190 (266)
T ss_dssp             CTTCCEEECTTSC--CCCCC-TT-TTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTT
T ss_pred             ccccccccccccc--cceec-cc-cccccccchhcccccccccccCccccccccccceeecccCCCc-ccChh
Confidence            5666677777776  55443 33 5667888999999999999666677888999999999999988 57753

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=2.7e-09  Score=59.15  Aligned_cols=61  Identities=20%  Similarity=0.216  Sum_probs=32.7

Q ss_pred             CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCc
Q 036214           17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLT   83 (90)
Q Consensus        17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~   83 (90)
                      +++|+.|++++|.  +...   . .+..++.|+.+++++|+++...+..+..+++|+.+++++|++.
T Consensus        40 l~~L~~L~Ls~N~--i~~l---~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~  100 (162)
T d1a9na_          40 LDQFDAIDFSDNE--IRKL---D-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV  100 (162)
T ss_dssp             TTCCSEEECCSSC--CCEE---C-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC
T ss_pred             cccCCEEECCCCC--CCcc---C-CcccCcchhhhhcccccccCCCccccccccccccceecccccc
Confidence            5566666666666  4432   1 3455556666666666665222233345555666666655544

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=3e-09  Score=58.98  Aligned_cols=75  Identities=24%  Similarity=0.196  Sum_probs=58.1

Q ss_pred             CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcch--hhhhcCCCccEEeccC
Q 036214            2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLP--WCLANMTSLRILDVSY   79 (90)
Q Consensus         2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p--~~~~~l~~L~~l~l~~   79 (90)
                      +|.+.. + +.+.. +++|+.|++++|.  ++... +. .+..+++++.+++++|+++ .++  ..+..+++|+.+++++
T Consensus        50 ~N~i~~-l-~~~~~-l~~L~~L~ls~N~--i~~l~-~~-~~~~l~~L~~L~L~~N~i~-~~~~l~~l~~l~~L~~L~l~~  121 (162)
T d1a9na_          50 DNEIRK-L-DGFPL-LRRLKTLLVNNNR--ICRIG-EG-LDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILR  121 (162)
T ss_dssp             SSCCCE-E-CCCCC-CSSCCEEECCSSC--CCEEC-SC-HHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCS
T ss_pred             CCCCCc-c-CCccc-Ccchhhhhccccc--ccCCC-cc-ccccccccccceecccccc-ccccccccccccccchhhcCC
Confidence            455553 3 34666 8999999999999  77643 33 4667899999999999998 444  3678899999999999


Q ss_pred             CcCcc
Q 036214           80 NQLTG   84 (90)
Q Consensus        80 n~l~~   84 (90)
                      |.++.
T Consensus       122 N~i~~  126 (162)
T d1a9na_         122 NPVTN  126 (162)
T ss_dssp             SGGGG
T ss_pred             Ccccc
Confidence            98865

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.77  E-value=1.6e-08  Score=60.35  Aligned_cols=80  Identities=15%  Similarity=0.161  Sum_probs=62.9

Q ss_pred             CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchh-h------hhcCCCccE
Q 036214            2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPW-C------LANMTSLRI   74 (90)
Q Consensus         2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~-~------~~~l~~L~~   74 (90)
                      +|.+.+..+..+.. +++|++|++++|.  ++. + |. ++..+++|+.+++++|+++ .++. .      ...+.+|+.
T Consensus       204 ~n~l~~~~~~~~~~-l~~L~~L~L~~N~--L~~-l-p~-~l~~l~~L~~L~Ls~N~i~-~i~~~~f~~~~~~~~~~~L~~  276 (305)
T d1xkua_         204 FNSISAVDNGSLAN-TPHLRELHLNNNK--LVK-V-PG-GLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSG  276 (305)
T ss_dssp             SSCCCEECTTTGGG-STTCCEEECCSSC--CSS-C-CT-TTTTCSSCCEEECCSSCCC-CCCTTSSSCSSCCTTSCCCSE
T ss_pred             cccccccccccccc-cccceeeeccccc--ccc-c-cc-ccccccCCCEEECCCCccC-ccChhhccCcchhcccCCCCE
Confidence            46677666777777 9999999999999  765 4 77 7889999999999999998 4432 2      235678999


Q ss_pred             EeccCCcCc-ccCCC
Q 036214           75 LDVSYNQLT-GSISL   88 (90)
Q Consensus        75 l~l~~n~l~-~~~p~   88 (90)
                      +++++|.+. +.+++
T Consensus       277 L~L~~N~~~~~~~~~  291 (305)
T d1xkua_         277 VSLFSNPVQYWEIQP  291 (305)
T ss_dssp             EECCSSSSCGGGSCG
T ss_pred             EECCCCcCccCcCCH
Confidence            999999985 45554

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.74  E-value=2.2e-08  Score=60.88  Aligned_cols=66  Identities=30%  Similarity=0.468  Sum_probs=46.5

Q ss_pred             HHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcccC
Q 036214           12 SIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTGSI   86 (90)
Q Consensus        12 ~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~~~   86 (90)
                      .+.. ++.++.+++++|.  +.+..    .+..+++|+.+++++|+++ .++ .+..+++|+++++++|++++..
T Consensus       302 ~~~~-~~~l~~L~ls~n~--l~~l~----~l~~l~~L~~L~L~~n~l~-~l~-~l~~l~~L~~L~l~~N~l~~l~  367 (384)
T d2omza2         302 PISN-LKNLTYLTLYFNN--ISDIS----PVSSLTKLQRLFFANNKVS-DVS-SLANLTNINWLSAGHNQISDLT  367 (384)
T ss_dssp             GGGG-CTTCSEEECCSSC--CSCCG----GGGGCTTCCEEECCSSCCC-CCG-GGGGCTTCCEEECCSSCCCBCG
T ss_pred             ccch-hcccCeEECCCCC--CCCCc----ccccCCCCCEEECCCCCCC-CCh-hHcCCCCCCEEECCCCcCCCCh
Confidence            3455 7778888888887  66532    3566777888888888777 444 4777788888888888777643

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.69  E-value=5.1e-08  Score=59.22  Aligned_cols=68  Identities=18%  Similarity=0.325  Sum_probs=53.6

Q ss_pred             CCcCCccchhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCC
Q 036214            2 RSALNTSFLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYN   80 (90)
Q Consensus         2 ~n~~~~~~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n   80 (90)
                      .|++.+. + .+.. +++|++|++++|.  ++.   .. .+..+++|+.+++++|++++..|  +.++++|+.|++++|
T Consensus       316 ~n~l~~l-~-~l~~-l~~L~~L~L~~n~--l~~---l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         316 FNNISDI-S-PVSS-LTKLQRLFFANNK--VSD---VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             SSCCSCC-G-GGGG-CTTCCEEECCSSC--CCC---CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCCCCC-c-cccc-CCCCCEEECCCCC--CCC---Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            3555544 2 2666 9999999999999  765   33 57889999999999999995443  788999999999887

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.57  E-value=1.6e-07  Score=53.87  Aligned_cols=64  Identities=22%  Similarity=0.392  Sum_probs=51.0

Q ss_pred             HHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCccc
Q 036214           13 IGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTGS   85 (90)
Q Consensus        13 ~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~~   85 (90)
                      +.. ++.++.|++++|.  +...   . .+..+++|+.+++++|+++ .++. +..+++|++|++++|++++.
T Consensus       147 ~~~-~~~L~~L~l~~n~--~~~~---~-~l~~l~~L~~L~Ls~n~l~-~l~~-l~~l~~L~~L~Ls~N~lt~i  210 (227)
T d1h6ua2         147 LAG-LTNLQYLSIGNAQ--VSDL---T-PLANLSKLTTLKADDNKIS-DISP-LASLPNLIEVHLKNNQISDV  210 (227)
T ss_dssp             GGG-CTTCCEEECCSSC--CCCC---G-GGTTCTTCCEEECCSSCCC-CCGG-GGGCTTCCEEECTTSCCCBC
T ss_pred             hcc-ccccccccccccc--cccc---h-hhcccccceecccCCCccC-CChh-hcCCCCCCEEECcCCcCCCC
Confidence            555 7889999999988  6543   2 5778889999999999988 4543 78889999999999988764

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.49  E-value=8.2e-09  Score=58.83  Aligned_cols=68  Identities=24%  Similarity=0.292  Sum_probs=43.6

Q ss_pred             chhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcc
Q 036214            9 FLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTG   84 (90)
Q Consensus         9 ~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~   84 (90)
                      ++..+.. +++|++|++++|.  ++..   . .+..+++|+.+++++|+++ .++.....+++|+.|++++|.++.
T Consensus        40 l~~sl~~-L~~L~~L~Ls~n~--I~~i---~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~  107 (198)
T d1m9la_          40 MDATLST-LKACKHLALSTNN--IEKI---S-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS  107 (198)
T ss_dssp             CHHHHHH-TTTCCEEECSEEE--ESCC---C-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC
T ss_pred             hhhHHhc-ccccceeECcccC--CCCc---c-cccCCccccChhhcccccc-cccccccccccccccccccccccc
Confidence            3455666 7777777777777  5532   2 4566677777777777776 455444444556667776666553

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.49  E-value=2.7e-07  Score=52.94  Aligned_cols=58  Identities=26%  Similarity=0.347  Sum_probs=49.0

Q ss_pred             HHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccC
Q 036214           13 IGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSY   79 (90)
Q Consensus        13 ~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~   79 (90)
                      +.. +++|+.|++++|.  +++.  +  .+..+++|+.+++++|+++ .++. +.++++|+.+++++
T Consensus       169 l~~-l~~L~~L~Ls~n~--l~~l--~--~l~~l~~L~~L~Ls~N~lt-~i~~-l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         169 LAN-LSKLTTLKADDNK--ISDI--S--PLASLPNLIEVHLKNNQIS-DVSP-LANTSNLFIVTLTN  226 (227)
T ss_dssp             GTT-CTTCCEEECCSSC--CCCC--G--GGGGCTTCCEEECTTSCCC-BCGG-GTTCTTCCEEEEEE
T ss_pred             hcc-cccceecccCCCc--cCCC--h--hhcCCCCCCEEECcCCcCC-CCcc-cccCCCCCEEEeeC
Confidence            666 9999999999999  7753  2  5778899999999999999 5553 78999999999874

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.44  E-value=9.3e-07  Score=50.27  Aligned_cols=62  Identities=23%  Similarity=0.405  Sum_probs=42.1

Q ss_pred             HHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCc
Q 036214           13 IGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLT   83 (90)
Q Consensus        13 ~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~   83 (90)
                      +.. +++|++|++++|.  +++..    .+..+++|+.+++++|+++ .++ .+..+++|+.+++++|.+.
T Consensus        64 l~~-l~~L~~L~L~~n~--i~~l~----~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~~~~~  125 (210)
T d1h6ta2          64 IQY-LPNVTKLFLNGNK--LTDIK----PLANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEHNGIS  125 (210)
T ss_dssp             GGG-CTTCCEEECCSSC--CCCCG----GGTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEECTTSCCC
T ss_pred             Hhh-CCCCCEEeCCCcc--ccCcc----ccccCcccccccccccccc-ccc-ccccccccccccccccccc
Confidence            445 7777777777777  66532    3556777777777777777 454 3666777777777776654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.42  E-value=6.5e-07  Score=50.50  Aligned_cols=64  Identities=36%  Similarity=0.548  Sum_probs=47.8

Q ss_pred             HHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcc
Q 036214           12 SIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTG   84 (90)
Q Consensus        12 ~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~   84 (90)
                      .+.. +++|+.+++++|.  +..   .+ .+..++.++.+++.+|+++ .++ .+.++++|+.|++++|+++.
T Consensus       123 ~~~~-l~~L~~L~l~~n~--l~~---~~-~l~~~~~L~~L~l~~n~l~-~l~-~l~~l~~L~~L~ls~N~i~~  186 (199)
T d2omxa2         123 PLKN-LTNLNRLELSSNT--ISD---IS-ALSGLTSLQQLNFSSNQVT-DLK-PLANLTTLERLDISSNKVSD  186 (199)
T ss_dssp             GGTT-CTTCSEEECCSSC--CCC---CG-GGTTCTTCSEEECCSSCCC-CCG-GGTTCTTCCEEECCSSCCCC
T ss_pred             ccch-hhhhHHhhhhhhh--hcc---cc-ccccccccccccccccccc-CCc-cccCCCCCCEEECCCCCCCC
Confidence            3555 7788888888888  554   22 4677788888888888887 443 37788899999999988765

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=2.8e-08  Score=54.90  Aligned_cols=65  Identities=20%  Similarity=0.085  Sum_probs=49.6

Q ss_pred             CCCCcEEeccCCccccccccc-hhhhhcCcccccEEEccCCcCCCcchh-hhhcCCCccEEeccCCcCccc
Q 036214           17 MSSLKYLSLSGSTIGINSSMI-LDQGLCSLVHLQELYIASNDLRGSLPW-CLANMTSLRILDVSYNQLTGS   85 (90)
Q Consensus        17 l~~l~~L~l~~n~~~~~~~~~-~~~~~~~l~~l~~l~l~~n~~~~~~p~-~~~~l~~L~~l~l~~n~l~~~   85 (90)
                      ++.|++|++++|+  ++.... +. .+..+++|+.+++++|.++ .++. ..-....|+.+++++|++...
T Consensus        64 ~~~L~~L~Ls~N~--i~~l~~~~~-~~~~l~~L~~L~Ls~N~i~-~l~~l~~l~~~~L~~L~L~~Npl~~~  130 (162)
T d1koha1          64 IPELLSLNLSNNR--LYRLDDMSS-IVQKAPNLKILNLSGNELK-SERELDKIKGLKLEELWLDGNSLSDT  130 (162)
T ss_dssp             CTTCCCCCCCSSC--CCCCSGGGT-HHHHSTTCCCCCCTTSCCC-CGGGHHHHTTCCCSSCCCTTSTTSSS
T ss_pred             CCCCCEeeCCCcc--ccCCchhHH-HHhhCCcccccccccCccc-cchhhhhhhccccceeecCCCCcCcC
Confidence            8999999999999  665320 23 4667899999999999999 4443 333455789999999998764

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=4.3e-07  Score=52.26  Aligned_cols=68  Identities=19%  Similarity=0.261  Sum_probs=39.0

Q ss_pred             HHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEcc-CCcCCCcchhhhhcCCCccEEeccCCcCcc
Q 036214           13 IGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIA-SNDLRGSLPWCLANMTSLRILDVSYNQLTG   84 (90)
Q Consensus        13 ~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~-~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~   84 (90)
                      |.+ +++|++|++++|.  +...+ +...|..++.++.+.+. .+.+....+..+..+++|+.+++++|.+..
T Consensus        49 f~~-l~~L~~L~ls~n~--~~~~i-~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~  117 (242)
T d1xwdc1          49 FSG-FGDLEKIEISQND--VLEVI-EADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH  117 (242)
T ss_dssp             TTT-CTTCCEEEEESCT--TCCEE-CSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCS
T ss_pred             hhc-cchhhhhhhcccc--cccee-eccccccccccccccccccccccccccccccccccccccccchhhhcc
Confidence            444 6666666666666  44332 22145556666666543 344554444556667777777777776654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.33  E-value=2.3e-08  Score=56.93  Aligned_cols=61  Identities=31%  Similarity=0.357  Sum_probs=37.1

Q ss_pred             CCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcch--hhhhcCCCccEEeccCCcCccc
Q 036214           18 SSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLP--WCLANMTSLRILDVSYNQLTGS   85 (90)
Q Consensus        18 ~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p--~~~~~l~~L~~l~l~~n~l~~~   85 (90)
                      +.|++|++++|.  ++.   .. .+..+++|+.+++++|+++ .++  ..+..+++|+.+++++|++...
T Consensus        93 ~~L~~L~l~~N~--i~~---l~-~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~L~~N~l~~~  155 (198)
T d1m9la_          93 DTLEELWISYNQ--IAS---LS-GIEKLVNLRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             HHCCEEECSEEE--CCC---HH-HHHHHHHSSEEEESEEECC-CHHHHHHHTTTTTCSEEEECSSHHHHH
T ss_pred             cccccccccccc--ccc---cc-cccccccccccccccchhc-cccccccccCCCccceeecCCCccccC
Confidence            345555555555  443   22 3455566777777777776 433  3566777777777777776543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.31  E-value=9.9e-07  Score=50.16  Aligned_cols=64  Identities=25%  Similarity=0.338  Sum_probs=45.3

Q ss_pred             HHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcc
Q 036214           12 SIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTG   84 (90)
Q Consensus        12 ~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~   84 (90)
                      .+.. ++.++.+++++|.  +...   . .+..+++|+.+++++|+++ .++. +.++++|+.|++++|.++.
T Consensus       129 ~l~~-l~~l~~l~~~~n~--l~~~---~-~~~~l~~L~~l~l~~n~l~-~i~~-l~~l~~L~~L~Ls~N~i~~  192 (210)
T d1h6ta2         129 GLVH-LPQLESLYLGNNK--ITDI---T-VLSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSKNHISD  192 (210)
T ss_dssp             GGGG-CTTCCEEECCSSC--CCCC---G-GGGGCTTCSEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCB
T ss_pred             cccc-ccccccccccccc--cccc---c-ccccccccccccccccccc-cccc-ccCCCCCCEEECCCCCCCC
Confidence            4555 7778888888887  6543   2 4556777888888888887 3433 6777888888888887764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.28  E-value=2e-06  Score=48.42  Aligned_cols=37  Identities=16%  Similarity=0.368  Sum_probs=15.8

Q ss_pred             CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCC
Q 036214           17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLR   59 (90)
Q Consensus        17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~   59 (90)
                      +++|++|++++|.  +++..    .+..+++|+.++++.|.+.
T Consensus        61 l~nL~~L~Ls~N~--l~~~~----~l~~l~~L~~L~l~~n~~~   97 (199)
T d2omxa2          61 LNNLTQINFSNNQ--LTDIT----PLKNLTKLVDILMNNNQIA   97 (199)
T ss_dssp             CTTCCEEECCSSC--CCCCG----GGTTCTTCCEEECCSSCCC
T ss_pred             CCCcCcCcccccc--ccCcc----cccCCcccccccccccccc
Confidence            4444444444444  33321    2334444444444444443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.17  E-value=2.8e-06  Score=50.57  Aligned_cols=60  Identities=25%  Similarity=0.270  Sum_probs=47.5

Q ss_pred             CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcchhhhhcCCCccEEeccCCcCcccCCCC
Q 036214           17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLPWCLANMTSLRILDVSYNQLTGSISLS   89 (90)
Q Consensus        17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~   89 (90)
                      +++|++|++++|.  +.. + |.    .+++|+.|++++|+++ .+|..   +.+|+.|++++|+++ .+|..
T Consensus       283 ~~~L~~L~Ls~N~--l~~-l-p~----~~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~~  342 (353)
T d1jl5a_         283 PPSLEELNVSNNK--LIE-L-PA----LPPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPDI  342 (353)
T ss_dssp             CTTCCEEECCSSC--CSC-C-CC----CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCCC
T ss_pred             CCCCCEEECCCCc--cCc-c-cc----ccCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCcc
Confidence            5789999999999  764 3 54    3578999999999998 67653   467999999999987 46643

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=4.5e-05  Score=44.95  Aligned_cols=61  Identities=23%  Similarity=0.247  Sum_probs=42.7

Q ss_pred             CCCCcEEeccCCccccccccchhhhhcCcccccEEEccCC-cCCCcchhhhhcCCCccEEeccCC
Q 036214           17 MSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASN-DLRGSLPWCLANMTSLRILDVSYN   80 (90)
Q Consensus        17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n-~~~~~~p~~~~~l~~L~~l~l~~n   80 (90)
                      +++|+.|++++|.. +++.. .. .+..+++|++++++++ .+++.....+.++++|+.+++.++
T Consensus       174 ~~~L~~L~L~~~~~-itd~~-~~-~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         174 CPNLVHLDLSDSVM-LKNDC-FQ-EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             CTTCSEEECTTCTT-CCGGG-GG-GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccccccccccccC-CCchh-hh-hhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            78888888887541 44333 44 5667788888888874 566555556777888888888765

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=2.1e-05  Score=48.10  Aligned_cols=65  Identities=32%  Similarity=0.310  Sum_probs=44.3

Q ss_pred             CCCCcEEeccCCccccccccchh---hhhc-CcccccEEEccCCcCCCc----chhhhhcCCCccEEeccCCcCcc
Q 036214           17 MSSLKYLSLSGSTIGINSSMILD---QGLC-SLVHLQELYIASNDLRGS----LPWCLANMTSLRILDVSYNQLTG   84 (90)
Q Consensus        17 l~~l~~L~l~~n~~~~~~~~~~~---~~~~-~l~~l~~l~l~~n~~~~~----~p~~~~~l~~L~~l~l~~n~l~~   84 (90)
                      ..+|++|++++|.  +.... ..   ..+. ....|+.|++++|.++..    +...+..+++|++|++++|.++.
T Consensus       339 ~~~L~~L~Ls~N~--i~~~g-~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~  411 (460)
T d1z7xw1         339 NRFLLELQISNNR--LEDAG-VRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  411 (460)
T ss_dssp             CSSCCEEECCSSB--CHHHH-HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             ccchhhhheeeec--ccCcc-cchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCH
Confidence            5678899998888  54321 11   0222 345688899999888742    44556677889999999888764

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=2.3e-05  Score=46.23  Aligned_cols=64  Identities=23%  Similarity=0.298  Sum_probs=38.0

Q ss_pred             HHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCC-cCCCc-chhhhhcCCCccEEeccCC
Q 036214           13 IGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASN-DLRGS-LPWCLANMTSLRILDVSYN   80 (90)
Q Consensus        13 ~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n-~~~~~-~p~~~~~l~~L~~l~l~~n   80 (90)
                      +..++++|++|++.++.  +.... +. .+..+++|+.++++++ .+++. +......+++|++|+++++
T Consensus        66 l~~~c~~L~~L~L~~~~--l~~~~-~~-~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c  131 (284)
T d2astb2          66 ILSQCSKLQNLSLEGLR--LSDPI-VN-TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC  131 (284)
T ss_dssp             HHTTBCCCSEEECTTCB--CCHHH-HH-HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred             HHHhCCCcccccccccC--CCcHH-HH-HHhcCCCCcCccccccccccccccchhhHHHHhccccccccc
Confidence            33336777777777776  55544 44 5666677777777764 45421 2223345667777777764

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=5.1e-05  Score=43.27  Aligned_cols=59  Identities=24%  Similarity=0.254  Sum_probs=30.7

Q ss_pred             CCcEEeccCCccccccccchhhhhcCcccccEE-EccCCcCCCcch-hhhhcCCCccEEeccCCcCc
Q 036214           19 SLKYLSLSGSTIGINSSMILDQGLCSLVHLQEL-YIASNDLRGSLP-WCLANMTSLRILDVSYNQLT   83 (90)
Q Consensus        19 ~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l-~l~~n~~~~~~p-~~~~~l~~L~~l~l~~n~l~   83 (90)
                      .++.+++.+|.  ++..  +. .......++.+ ++..|.++ .+| ..+.++++|++|++++|+++
T Consensus       154 ~l~~L~l~~n~--l~~i--~~-~~~~~~~l~~~~~l~~n~l~-~l~~~~f~~l~~L~~L~Ls~N~l~  214 (242)
T d1xwdc1         154 ESVILWLNKNG--IQEI--HN-CAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH  214 (242)
T ss_dssp             SCEEEECCSSC--CCEE--CT-TTTTTCCEEEEECTTCTTCC-CCCTTTTTTSCCCSEEECTTSCCC
T ss_pred             cceeeeccccc--cccc--cc-ccccchhhhccccccccccc-cccHHHhcCCCCCCEEECCCCcCC
Confidence            45556666666  4432  22 22223333333 34555565 333 34566667777777766665

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=2.7e-05  Score=42.49  Aligned_cols=70  Identities=23%  Similarity=0.262  Sum_probs=48.0

Q ss_pred             CCcCCcc--chhHHHhhCCCCcEEeccCCccccccccchhhhhcCcccccEEEccCCcCCCcch-------hhhhcCCCc
Q 036214            2 RSALNTS--FLQSIGESMSSLKYLSLSGSTIGINSSMILDQGLCSLVHLQELYIASNDLRGSLP-------WCLANMTSL   72 (90)
Q Consensus         2 ~n~~~~~--~p~~~~~~l~~l~~L~l~~n~~~~~~~~~~~~~~~~l~~l~~l~l~~n~~~~~~p-------~~~~~l~~L   72 (90)
                      +|++...  ++..+.. +++|+.|++++|.  ++... .- .+.....++.+++++|.+.....       ..+..+++|
T Consensus        74 ~N~i~~l~~~~~~~~~-l~~L~~L~Ls~N~--i~~l~-~l-~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L  148 (162)
T d1koha1          74 NNRLYRLDDMSSIVQK-APNLKILNLSGNE--LKSER-EL-DKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKL  148 (162)
T ss_dssp             SSCCCCCSGGGTHHHH-STTCCCCCCTTSC--CCCGG-GH-HHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTC
T ss_pred             CccccCCchhHHHHhh-CCcccccccccCc--cccch-hh-hhhhccccceeecCCCCcCcCcccchhHHHHHHHHCCCC
Confidence            5666543  3444666 9999999999999  76643 32 23344568999999999875433       225578888


Q ss_pred             cEEe
Q 036214           73 RILD   76 (90)
Q Consensus        73 ~~l~   76 (90)
                      +.||
T Consensus       149 ~~LD  152 (162)
T d1koha1         149 LRLD  152 (162)
T ss_dssp             CEET
T ss_pred             CEEC
Confidence            8875

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=3.2e-05  Score=47.19  Aligned_cols=67  Identities=25%  Similarity=0.312  Sum_probs=36.6

Q ss_pred             HHhhCCCCcEEeccCCccccccccchh---hhhc-CcccccEEEccCCcCCCc----chhhhhcCCCccEEeccCCcCc
Q 036214           13 IGESMSSLKYLSLSGSTIGINSSMILD---QGLC-SLVHLQELYIASNDLRGS----LPWCLANMTSLRILDVSYNQLT   83 (90)
Q Consensus        13 ~~~~l~~l~~L~l~~n~~~~~~~~~~~---~~~~-~l~~l~~l~l~~n~~~~~----~p~~~~~l~~L~~l~l~~n~l~   83 (90)
                      +.. +++|+.|++++|.  ++... ..   ..+. ....|+.+++++|.+++.    ++..+..+++|+++++++|.+.
T Consensus        51 L~~-~~~L~~LdLs~N~--i~~~~-~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          51 LRV-NPALAELNLRSNE--LGDVG-VHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             HHT-CTTCCEEECTTCC--CHHHH-HHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             Hhc-CCCCCEEECcCCc--CChHH-HHHHHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence            344 6667777777776  43211 11   0111 123577777777776532    3344556667777777777654

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=97.55  E-value=0.00017  Score=42.58  Aligned_cols=60  Identities=32%  Similarity=0.356  Sum_probs=30.0

Q ss_pred             CCCCcEEeccCCccccccccchhhhhcC----------------c-ccccEEEccCCcCCCcchhhhhcCCCccEEeccC
Q 036214           17 MSSLKYLSLSGSTIGINSSMILDQGLCS----------------L-VHLQELYIASNDLRGSLPWCLANMTSLRILDVSY   79 (90)
Q Consensus        17 l~~l~~L~l~~n~~~~~~~~~~~~~~~~----------------l-~~l~~l~l~~n~~~~~~p~~~~~l~~L~~l~l~~   79 (90)
                      .++|++|++++|.  ++. + |. .+..                + +.|+++++++|.+. .+|. +..+++|+.+++++
T Consensus        57 ~~~L~~L~Ls~N~--l~~-l-p~-~~~~L~~L~l~~n~l~~l~~lp~~L~~L~L~~n~l~-~lp~-~~~l~~L~~L~l~~  129 (353)
T d1jl5a_          57 PPHLESLVASCNS--LTE-L-PE-LPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDN  129 (353)
T ss_dssp             CTTCSEEECCSSC--CSS-C-CC-CCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCS
T ss_pred             CCCCCEEECCCCC--Ccc-c-cc-chhhhhhhhhhhcccchhhhhccccccccccccccc-cccc-hhhhccceeecccc
Confidence            4567777777777  543 2 43 2211                1 12445555555554 3332 34455555555555


Q ss_pred             CcCc
Q 036214           80 NQLT   83 (90)
Q Consensus        80 n~l~   83 (90)
                      |.+.
T Consensus       130 ~~~~  133 (353)
T d1jl5a_         130 NSLK  133 (353)
T ss_dssp             SCCS
T ss_pred             cccc
Confidence            5544

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.42  E-value=0.00014  Score=43.55  Aligned_cols=40  Identities=23%  Similarity=0.211  Sum_probs=18.8

Q ss_pred             CcccccEEEccCCcCCCc----chhhhhcCCCccEEeccCCcCc
Q 036214           44 SLVHLQELYIASNDLRGS----LPWCLANMTSLRILDVSYNQLT   83 (90)
Q Consensus        44 ~l~~l~~l~l~~n~~~~~----~p~~~~~l~~L~~l~l~~n~l~   83 (90)
                      ..++|+.++++.|.++..    +...+..+++|++|++++|.+.
T Consensus       213 ~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~  256 (344)
T d2ca6a1         213 YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS  256 (344)
T ss_dssp             GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred             chhhhcccccccccccccccccccccccccccchhhhhhcCccC
Confidence            344455555555554321    2233344455555555555543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.15  E-value=0.00032  Score=41.97  Aligned_cols=17  Identities=29%  Similarity=0.163  Sum_probs=8.3

Q ss_pred             cCcccccEEEccCCcCC
Q 036214           43 CSLVHLQELYIASNDLR   59 (90)
Q Consensus        43 ~~l~~l~~l~l~~n~~~   59 (90)
                      ..++.|+.+++++|.++
T Consensus       240 ~~~~~L~~L~Ls~n~i~  256 (344)
T d2ca6a1         240 KSWPNLRELGLNDCLLS  256 (344)
T ss_dssp             GGCTTCCEEECTTCCCC
T ss_pred             cccccchhhhhhcCccC
Confidence            34444555555555544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.87  E-value=0.0014  Score=35.52  Aligned_cols=63  Identities=17%  Similarity=0.116  Sum_probs=37.4

Q ss_pred             CCCCcEEeccCCccccccccchh---hhhcCcccccEEEccCCcCCCc----chhhhhcCCCccEEeccCCcC
Q 036214           17 MSSLKYLSLSGSTIGINSSMILD---QGLCSLVHLQELYIASNDLRGS----LPWCLANMTSLRILDVSYNQL   82 (90)
Q Consensus        17 l~~l~~L~l~~n~~~~~~~~~~~---~~~~~l~~l~~l~l~~n~~~~~----~p~~~~~l~~L~~l~l~~n~l   82 (90)
                      .+.|+.|++++|.  +.... ..   ..+...+.++.+++++|.+++.    +...+...+.|++|++++|..
T Consensus        43 n~~L~~L~Ls~n~--l~~~~-~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~  112 (167)
T d1pgva_          43 SKHIEKFSLANTA--ISDSE-ARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQ  112 (167)
T ss_dssp             CSCCCEEECTTSC--CBHHH-HTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSS
T ss_pred             CCccceeeccccc--cchhH-HHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcC
Confidence            4567788888777  44221 11   0233456677888888877642    222344556678888877653

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.60  E-value=0.002  Score=34.92  Aligned_cols=65  Identities=22%  Similarity=0.361  Sum_probs=46.7

Q ss_pred             CCCCcEEeccCC-ccccccccchh---hhhcCcccccEEEccCCcCCC----cchhhhhcCCCccEEeccCCcCcc
Q 036214           17 MSSLKYLSLSGS-TIGINSSMILD---QGLCSLVHLQELYIASNDLRG----SLPWCLANMTSLRILDVSYNQLTG   84 (90)
Q Consensus        17 l~~l~~L~l~~n-~~~~~~~~~~~---~~~~~l~~l~~l~l~~n~~~~----~~p~~~~~l~~L~~l~l~~n~l~~   84 (90)
                      .+.|+.|+++++ .  +.... ..   ..+.....++.+++++|.+..    .+...+...+.|+.|++++|.+..
T Consensus        14 ~~~L~~L~L~~~~~--i~~~~-~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~   86 (167)
T d1pgva_          14 DTDLKEVNINNMKR--VSKER-IRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP   86 (167)
T ss_dssp             CSSCCEEECTTCCS--SCHHH-HHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred             CCCCcEEEeCCCCC--CCHHH-HHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcch
Confidence            588999999974 4  33211 11   135566789999999999874    333455667889999999998875

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.39  E-value=0.0078  Score=32.25  Aligned_cols=13  Identities=23%  Similarity=0.365  Sum_probs=6.5

Q ss_pred             CCCCcEEeccCCc
Q 036214           17 MSSLKYLSLSGST   29 (90)
Q Consensus        17 l~~l~~L~l~~n~   29 (90)
                      .++|++|++++|.
T Consensus        45 n~~L~~L~Ls~n~   57 (166)
T d1io0a_          45 NTYVKKFSIVGTR   57 (166)
T ss_dssp             CCSCCEEECTTSC
T ss_pred             CCccCeeeccCCc
Confidence            3445555555554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=93.20  E-value=0.099  Score=27.67  Aligned_cols=65  Identities=20%  Similarity=0.242  Sum_probs=40.7

Q ss_pred             CCCCcEEeccC-Cccccccccchh---hhhcCcccccEEEccCCcCCCc----chhhhhcCCCccEEeccCCcCcc
Q 036214           17 MSSLKYLSLSG-STIGINSSMILD---QGLCSLVHLQELYIASNDLRGS----LPWCLANMTSLRILDVSYNQLTG   84 (90)
Q Consensus        17 l~~l~~L~l~~-n~~~~~~~~~~~---~~~~~l~~l~~l~l~~n~~~~~----~p~~~~~l~~L~~l~l~~n~l~~   84 (90)
                      .+.|++|++++ +.  ++... ..   ..+...++|+.|++++|.++..    +...+.....++.+++++|.+..
T Consensus        16 ~~~L~~L~L~~~~~--i~~~~-~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~   88 (166)
T d1io0a_          16 DPDLEEVNLNNIMN--IPVPT-LKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG   88 (166)
T ss_dssp             CTTCCEEECTTCTT--CCHHH-HHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             CCCCcEEEcCCCCC--CCHHH-HHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccc
Confidence            57888888876 44  32211 11   1345667788888888887643    22344556778888888777643