Citrus Sinensis ID: 036216

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-----
Protein Sequence
MLPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSSTQLQSFNASCFLGNNLCGAPLPKNCTDENVSIPEDVNGEEDEDENDVDYWL
Secondary Structure (PSIPRED)
ccccccEEEcccccccccccccccccccccEEEccccccccccccHHHcccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEEEcccccccccHHHHHHcccccccccEEEcccccccccccccccccccccEEEccccccccccEEEccccccEEEccHHHccccccccEEEccccEEEEEccccccccccccEEEcccccccccccHHccccccccEEEcccccccccccHHHHHccccccEEEccccccEEccccccccccccEEEccccccEEEcccccccccEEEcccccccccccHHHHHcccccccccEEEcccccccccccccccccccccEEEccccccEEcccccccccccccEEEccccEEEEcccHHHHHcccccEEEcccccccccccHHHHHccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHHHcccccccccccccEEEEccccccccccEEEEEEEEEEccccEEHHHHcccEEEEEcccccccccccHHHHccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEcccccccccccHHHcccccccEEEccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccEEccccccccccccEEEcccccccccccHHHcccccccccccEEEEcccccccccccHHHccccccEEEEEccccccccccHHHccccccccccHHHHcccccccEEEcccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEEccccccccccHHHHHHcccccEEEcccccccccccccccccccEEEEEcccccccccccHccccHHHHHHHHcccccccccccHHHccccccEEEEEccccccccccHHHcccccccEEEccccccEEcccHHHHHcccccEEEccccEEEEEccHHHccccccEEEEcccccccccccHHHHHHcccccEEEccccccEEcccHHHHHcccccEEEccccEEEEEccHHHcccHHcHEEEcccccccccccccccccccEEEEEcccccccccccHHHccccccEEEEccccccEEcccHHHHHcccccEEEccccEEEEEcccHHcccccccEEEcccccccccccHHHHcccccEEEEccccccccccccccccccccEEEcccccccccccccHcccccccccEEEEcccccccccccccc
Coil and Loop (DISEMBL)
MLPSLVEldlsncqlhhfpqlpvanfstlttldlshnqfdnsfvpAWVFGLSRLHFLNlgynnfqgpipeglqnltslkhlglpfnhfsssvpkwfdrlthLEHLSLSYnslegriprSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASssisghltdqlgqfknldsldlsnnsivgPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKltlkvkrdwippfqlielglrscdvgsrfplwlysqkdlqfldlfnsgisgtfpnrLLKSASQLYLLDlghnqihgeltnltkaSQLSYLSLIANnfsgslplissnltvlelsgnslsgpiFHFLCYTINETMKLKFLFLDRnilqgklpdcWMSYQNLMAldlsnnkftgnlptslgsLSSLVSLHLRknrlsgtipillknctslvtldvgenevfgnipswfgERFSRMVLLILRsnnfdgplpteLCDLAFLQILDLadnnlsgtipnciHNLTAmatvnpftgnaieysfplnstigpgtvtEQELVVTKGVAADYNEILNLVRIIDFsknlfsgtlpmgltnlKAVQSLNLSYniftgripetigtmrslesidfsvnkftgeipqsmssltflnhlnlsnnyltgkipsstqlqsfnascflgnnlcgaplpknctdenvsipedvngeededendvdywl
Flexible Loop (DISEMBL)
MLPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYnslegripRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSSTQLQSFNASCFLGNNLCGAPLPKNCTDENVSipedvngeededendvdywl
Low Complexity Region (SEG)
MLPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVsngleslalasssisghlTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTslgslsslvslhlRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSSTQLQSFNASCFLGNNLCGAPLPKNCTDENVSIPedvngeededendvdYWL
Disordered region (IsUnstruct)
*****VELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSSTQLQSFNASCFLGNNLCGAPLPKN***************************
Disordered Region (DISOPRED)
MLPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATV******AIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSSTQLQSFNASCFLGNNLCGAPL************************DVDYWL
Disordered Region (DISEMBL)
MLPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSSTQLQSFNASCFLGNNLCGAPLPKNCTDENVSIPEDV***************
Disordered Region (DISPRO)
*LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSSTQLQSFNASCFLGNNLCGAPLPKNCTDENVSIPEDVNGEEDEDENDVDYWL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSSTQLQSFNASCFLGNNLCGAPLPKNCTDENVSIPEDVNGEEDEDENDVDYWL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	695	2.2.26 [Sep-21-2011]
Q9C9H7	847	Receptor-like protein 12	no	no	0.857	0.703	0.303	2e-64
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.867	0.482	0.330	4e-63
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.871	0.484	0.322	6e-63
Q9FL28	1173	LRR receptor-like serine/	no	no	0.907	0.537	0.296	1e-62
O49318	1124	Probable leucine-rich rep	no	no	0.835	0.516	0.298	3e-55
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.917	0.578	0.3	2e-54
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.864	0.504	0.303	2e-54
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.835	0.527	0.302	3e-53
Q9ZPS9	1143	Serine/threonine-protein	no	no	0.797	0.484	0.315	7e-52
O22476	1196	Protein BRASSINOSTEROID I	no	no	0.817	0.474	0.292	1e-51

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  248 bits (632), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 222/731 (30%), Positives = 325/731 (44%), Gaps = 135/731 (18%)

Query: 48  VFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSL 107
           +F L  L  L+L   N  G IP  L NL+ L  + L FN F   +P     L  L HL L
Sbjct: 106 LFKLQYLRHLDLTNCNLYGEIPSSLGNLSHLTLVNLYFNKFVGEIPASIGNLNQLRHLIL 165

Query: 108 SYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISG 167
           + N L G IP S+  L  L  L L   +L  +I + +          L +L+LAS+++ G
Sbjct: 166 ANNVLTGEIPSSLGNLSRLVNLELFSNRLVGKIPDSIGDLK-----QLRNLSLASNNLIG 220

Query: 168 HLTDQLGQFKNLDSLDLSNNSIVGP-----------RVLQLYLNKLHGTLSEIHFANLTK 216
            +   LG   NL  L L++N +VG            RV+    N L G +  I FANLTK
Sbjct: 221 EIPSSLGNLSNLVHLVLTHNQLVGEVPASIGNLIELRVMSFENNSLSGNI-PISFANLTK 279

Query: 217 LSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGIS 276
           LS+F++ +N  T                        S FP  +    +L++ D+  +  S
Sbjct: 280 LSIFVLSSNNFT------------------------STFPFDMSIFHNLEYFDVSYNSFS 315

Query: 277 GTFPNRLL------------------------KSASQLYLLDLGHNQIHGEL-TNLTKAS 311
           G FP  LL                         S+++L  L LG N++HG +  ++++  
Sbjct: 316 GPFPKSLLLIPSLESIYLQENQFTGPIEFANTSSSTKLQDLILGRNRLHGPIPESISRLL 375

Query: 312 QLSYLSLIANNFSGSLPLISSNLT------------------------------------ 335
            L  L +  NNF+G++P   S L                                     
Sbjct: 376 NLEELDISHNNFTGAIPPTISKLVNLLHLDLSKNNLEGEVPACLWRLNTMVLSHNSFSSF 435

Query: 336 -----------VLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQ 384
                       L+L+ NS  GPI + +C    +   L FL L  N+  G +P C  ++ 
Sbjct: 436 ENTSQEEALIEELDLNSNSFQGPIPYMIC----KLSSLGFLDLSNNLFSGSIPSCIRNFS 491

Query: 385 -NLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENE 443
            ++  L+L +N F+G LP      + LVSL +  N+L G  P  L NC +L  ++V  N+
Sbjct: 492 GSIKELNLGDNNFSGTLPDIFSKATELVSLDVSHNQLEGKFPKSLINCKALELVNVESNK 551

Query: 444 VFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAF--LQILDLADNNLSGTI-PNC 500
           +    PSW  E    + +L LRSN F GPL      + F  L+I+D++ NN SGT+ P  
Sbjct: 552 IKDIFPSWL-ESLPSLHVLNLRSNKFYGPLYHRHASIGFQSLRIIDISHNNFSGTLPPYY 610

Query: 501 IHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDF 560
             N   M T+   T    +Y              E E+ V KGV   +  I    R IDF
Sbjct: 611 FSNWKDMTTL---TEEMDQYMTEF-WRYADSYYHEMEM-VNKGVDMSFERIRRDFRAIDF 665

Query: 561 SKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQS 620
           S N  +G +P  L  LK ++ LNLS N FT  IP  +  +  LE++D S NK +G+IPQ 
Sbjct: 666 SGNKINGNIPESLGYLKELRVLNLSGNAFTSVIPRFLANLTKLETLDISRNKLSGQIPQD 725

Query: 621 MSSLTFLNHLNLSNNYLTGKIPSSTQLQSFNASCFLGN-NLCGAPLPKNCTDENV----- 674
           +++L+FL+++N S+N L G +P  TQ Q    S FL N  L G  L   C D        
Sbjct: 726 LAALSFLSYMNFSHNLLQGPVPRGTQFQRQKCSSFLDNPGLYG--LEDICRDTGALNPTS 783

Query: 675 SIPEDVNGEED 685
            +PED++  E+
Sbjct: 784 QLPEDLSEAEE 794

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Arabidopsis thaliana (taxid: 3702)

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  243 bits (620), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 228/689 (33%), Positives = 330/689 (47%), Gaps = 86/689 (12%)

Query: 23  VANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLG 82
           + N S LT    + N   N  +PA +  L  L  LNL  N+  G IP  L  ++ L++L 
Sbjct: 211 LGNCSDLTVFTAAENML-NGTIPAELGRLENLEILNLANNSLTGEIPSQLGEMSQLQYLS 269

Query: 83  LPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISE 142
           L  N     +PK    L +L+ L LS N+L G IP     +  L  L L    L+  + +
Sbjct: 270 LMANQLQGLIPKSLADLGNLQTLDLSANNLTGEIPEEFWNMSQLLDLVLANNHLSGSLPK 329

Query: 143 ILEIFSGCVSN-GLESLALASSSISGHLTDQLGQFKNLDSLDLSNNSIVG--PRVL---- 195
                S C +N  LE L L+ + +SG +  +L + ++L  LDLSNNS+ G  P  L    
Sbjct: 330 -----SICSNNTNLEQLVLSGTQLSGEIPVELSKCQSLKQLDLSNNSLAGSIPEALFELV 384

Query: 196 ---QLYL--NKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCD 250
               LYL  N L GTLS    +NLT L   ++  N L  K+ ++     +L  L L    
Sbjct: 385 ELTDLYLHNNTLEGTLSP-SISNLTNLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENR 443

Query: 251 VGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGEL-TNLTK 309
                P  + +   L+ +D+F +   G  P  + +   +L LL L  N++ G L  +L  
Sbjct: 444 FSGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSIGR-LKELNLLHLRQNELVGGLPASLGN 502

Query: 310 ASQLSYLSLIANNFSGSLP--------------------------LIS-SNLTVLELSGN 342
             QL+ L L  N  SGS+P                          LIS  NLT + LS N
Sbjct: 503 CHQLNILDLADNQLSGSIPSSFGFLKGLEQLMLYNNSLQGNLPDSLISLRNLTRINLSHN 562

Query: 343 SLSGPIFHFLCYTINETMKLKFLFLD--RNILQGKLPDCWMSYQNLMALDLSNNKFTGNL 400
            L+G I H LC + +      +L  D   N  + ++P    + QNL  L L  N+ TG +
Sbjct: 563 RLNGTI-HPLCGSSS------YLSFDVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTGKI 615

Query: 401 PTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMV 460
           P +LG +  L  L +  N L+GTIP+ L  C  L  +D+  N + G IP W G + S++ 
Sbjct: 616 PWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPPWLG-KLSQLG 674

Query: 461 LLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEY 520
            L L SN F   LPTEL +   L +L L  N+L+G+IP  I NL A+  +N    N    
Sbjct: 675 ELKLSSNQFVESLPTELFNCTKLLVLSLDGNSLNGSIPQEIGNLGALNVLN-LDKNQFSG 733

Query: 521 SFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQ 580
           S P    +G                      L+ +  +  S+N  +G +P+ +  L+ +Q
Sbjct: 734 SLP--QAMGK---------------------LSKLYELRLSRNSLTGEIPVEIGQLQDLQ 770

Query: 581 S-LNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTG 639
           S L+LSYN FTG IP TIGT+  LE++D S N+ TGE+P S+  +  L +LN+S N L G
Sbjct: 771 SALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGG 830

Query: 640 KIPSSTQLQSFNASCFLGN-NLCGAPLPK 667
           K+    Q   + A  FLGN  LCG+PL +
Sbjct: 831 KL--KKQFSRWPADSFLGNTGLCGSPLSR 857

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  242 bits (618), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 220/682 (32%), Positives = 333/682 (48%), Gaps = 76/682 (11%)

Query: 23  VANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLG 82
           + N ++L     + N+ + S +PA +  L  L  LNLG N+F G IP  L +L S+++L 
Sbjct: 212 IGNCTSLALFAAAFNRLNGS-LPAELNRLKNLQTLNLGDNSFSGEIPSQLGDLVSIQYLN 270

Query: 83  LPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISE 142
           L  N     +PK    L +L+ L LS N+L G I     R+  L  L L   +L+  + +
Sbjct: 271 LIGNQLQGLIPKRLTELANLQTLDLSSNNLTGVIHEEFWRMNQLEFLVLAKNRLSGSLPK 330

Query: 143 ILEIFSGCVSN-GLESLALASSSISGHLTDQLGQFKNLDSLDLSNNSIVGP--------- 192
            +     C +N  L+ L L+ + +SG +  ++   ++L  LDLSNN++ G          
Sbjct: 331 TI-----CSNNTSLKQLFLSETQLSGEIPAEISNCQSLKLLDLSNNTLTGQIPDSLFQLV 385

Query: 193 RVLQLYLN--KLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCD 250
            +  LYLN   L GTLS    +NLT L  F +  N L  KV ++     +L  + L    
Sbjct: 386 ELTNLYLNNNSLEGTLSS-SISNLTNLQEFTLYHNNLEGKVPKEIGFLGKLEIMYLYENR 444

Query: 251 VGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRL--LKSASQLYLLDLGHNQIHGEL-TNL 307
                P+ + +   LQ +D + + +SG  P+ +  LK  ++L+L +   N++ G +  +L
Sbjct: 445 FSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGRLKDLTRLHLRE---NELVGNIPASL 501

Query: 308 TKASQLSYLSLIANNFSGSLPLISSNLTVLEL---SGNSLSGPI------------FHFL 352
               Q++ + L  N  SGS+P     LT LEL     NSL G +             +F 
Sbjct: 502 GNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNSLQGNLPDSLINLKNLTRINFS 561

Query: 353 CYTINETMK-----LKFLFLD--RNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLG 405
               N ++        +L  D   N  +G +P       NL  L L  N+FTG +P + G
Sbjct: 562 SNKFNGSISPLCGSSSYLSFDVTENGFEGDIPLELGKSTNLDRLRLGKNQFTGRIPRTFG 621

Query: 406 SLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILR 465
            +S L  L + +N LSG IP+ L  C  L  +D+  N + G IP+W G +   +  L L 
Sbjct: 622 KISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVIPTWLG-KLPLLGELKLS 680

Query: 466 SNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLN 525
           SN F G LPTE+  L  +  L L  N+L+G+IP  I NL A+  +N       + S PL 
Sbjct: 681 SNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNLQALNALNLEEN---QLSGPLP 737

Query: 526 STIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQS-LNL 584
           STIG                      L+ +  +  S+N  +G +P+ +  L+ +QS L+L
Sbjct: 738 STIGK---------------------LSKLFELRLSRNALTGEIPVEIGQLQDLQSALDL 776

Query: 585 SYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSS 644
           SYN FTGRIP TI T+  LES+D S N+  GE+P  +  +  L +LNLS N L GK+   
Sbjct: 777 SYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKL--K 834

Query: 645 TQLQSFNASCFLGN-NLCGAPL 665
            Q   + A  F+GN  LCG+PL
Sbjct: 835 KQFSRWQADAFVGNAGLCGSPL 856

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  241 bits (616), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 224/755 (29%), Positives = 341/755 (45%), Gaps = 124/755 (16%)

Query: 5   LVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNF 64
           +V + L   QL       +AN + L  LDL+ N F    +PA +  L+ L+ L L  N F
Sbjct: 74  VVSVSLLEKQLEGVLSPAIANLTYLQVLDLTSNSFTGK-IPAEIGKLTELNQLILYLNYF 132

Query: 65  QGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLC 124
            G IP G+  L ++ +L L  N  S  VP+   + + L  +   YN+L G+IP  +  L 
Sbjct: 133 SGSIPSGIWELKNIFYLDLRNNLLSGDVPEEICKTSSLVLIGFDYNNLTGKIPECLGDLV 192

Query: 125 NLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLDL 184
           +L+     G  L   I     +  G ++N L  L L+ + ++G +    G   NL SL L
Sbjct: 193 HLQMFVAAGNHLTGSIP----VSIGTLAN-LTDLDLSGNQLTGKIPRDFGNLLNLQSLVL 247

Query: 185 SNNSIVGP-----------RVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKR 233
           + N + G              L+LY N+L G +      NL +L    +  NKLT  +  
Sbjct: 248 TENLLEGDIPAEIGNCSSLVQLELYDNQLTGKIPA-ELGNLVQLQALRIYKNKLTSSIPS 306

Query: 234 DWIPPFQLIELGLR--------SCDVG----------------SRFPLWLYSQKDLQFLD 269
                 QL  LGL         S ++G                  FP  + + ++L  L 
Sbjct: 307 SLFRLTQLTHLGLSENHLVGPISEEIGFLESLEVLTLHSNNFTGEFPQSITNLRNLTVLT 366

Query: 270 LFNSGISGTFPNRL-----------------------LKSASQLYLLDLGHNQIHGELTN 306
           +  + ISG  P  L                       + + + L LLDL HNQ+ GE+  
Sbjct: 367 VGFNNISGELPADLGLLTNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMTGEIPR 426

Query: 307 LTKASQLSYLSLIANNFSGSLP---LISSNLTVLELSGNSLSGPIFHFLCYTINETMKLK 363
                 L+++S+  N+F+G +P      SNL  L ++ N+L+G +       I +  KL+
Sbjct: 427 GFGRMNLTFISIGRNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPL----IGKLQKLR 482

Query: 364 FLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGT 423
            L +  N L G +P    + ++L  L L +N FTG +P  + +L+ L  L +  N L G 
Sbjct: 483 ILQVSYNSLTGPIPREIGNLKDLNILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGP 542

Query: 424 IPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFL 483
           IP  + +   L  LD+  N+  G IP+ F  +   +  L L+ N F+G +P  L  L+ L
Sbjct: 543 IPEEMFDMKLLSVLDLSNNKFSGQIPALF-SKLESLTYLSLQGNKFNGSIPASLKSLSLL 601

Query: 484 QILDLADNNLSGTIP-NCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTK 542
              D++DN L+GTIP   + +L  M     F+ N +  + P            +EL    
Sbjct: 602 NTFDISDNLLTGTIPGELLASLKNMQLYLNFSNNLLTGTIP------------KEL---- 645

Query: 543 GVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAV----------------------- 579
                    L +V+ ID S NLFSG++P  L   K V                       
Sbjct: 646 -------GKLEMVQEIDLSNNLFSGSIPRSLQACKNVFTLDFSQNNLSGHIPDEVFQGMD 698

Query: 580 --QSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYL 637
              SLNLS N F+G IP++ G M  L S+D S N  TGEIP+S+++L+ L HL L++N L
Sbjct: 699 MIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPESLANLSTLKHLKLASNNL 758

Query: 638 TGKIPSSTQLQSFNASCFLGN-NLCGAPLP-KNCT 670
            G +P S   ++ NAS  +GN +LCG+  P K CT
Sbjct: 759 KGHVPESGVFKNINASDLMGNTDLCGSKKPLKPCT 793

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  217 bits (552), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 204/684 (29%), Positives = 320/684 (46%), Gaps = 103/684 (15%)

Query: 23  VANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLG 82
           + N S L  + L++NQF  S +P  +  LS+L   N+  N   GP+PE + +L +L+ L 
Sbjct: 129 IGNCSKLEVMFLNNNQFGGS-IPVEINKLSQLRSFNICNNKLSGPLPEEIGDLYNLEELV 187

Query: 83  LPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLG----GAKLNQ 138
              N+ +  +P+    L  L       N   G IP  + +  NL+ L L       +L +
Sbjct: 188 AYTNNLTGPLPRSLGNLNKLTTFRAGQNDFSGNIPTEIGKCLNLKLLGLAQNFISGELPK 247

Query: 139 EISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLDLSNNSIVGP------ 192
           EI  +++         L+ + L  +  SG +   +G   +L++L L  NS+VGP      
Sbjct: 248 EIGMLVK---------LQEVILWQNKFSGFIPKDIGNLTSLETLALYGNSLVGPIPSEIG 298

Query: 193 -----RVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLR 247
                + L LY N+L+GT+ +     L KLS                     +++E+   
Sbjct: 299 NMKSLKKLYLYQNQLNGTIPK----ELGKLS---------------------KVMEIDFS 333

Query: 248 SCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGEL--- 304
              +    P+ L    +L+ L LF + ++G  PN L K    L  LDL  N + G +   
Sbjct: 334 ENLLSGEIPVELSKISELRLLYLFQNKLTGIIPNELSK-LRNLAKLDLSINSLTGPIPPG 392

Query: 305 -TNLTKASQLSYLSLIANNFSGSLPL---ISSNLTVLELSGNSLSGPIFHFLCYTINETM 360
             NLT   QL    L  N+ SG +P    + S L V++ S N LSG I  F+C   N   
Sbjct: 393 FQNLTSMRQLQ---LFHNSLSGVIPQGLGLYSPLWVVDFSENQLSGKIPPFICQQSN--- 446

Query: 361 KLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRL 420
            L  L L  N + G +P   +  ++L+ L +  N+ TG  PT L  L +L ++ L +NR 
Sbjct: 447 -LILLNLGSNRIFGNIPPGVLRCKSLLQLRVVGNRLTGQFPTELCKLVNLSAIELDQNRF 505

Query: 421 SGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDL 480
           SG +P  +  C  L  L +  N+   N+P+    + S +V   + SN+  GP+P+E+ + 
Sbjct: 506 SGPLPPEIGTCQKLQRLHLAANQFSSNLPNEI-SKLSNLVTFNVSSNSLTGPIPSEIANC 564

Query: 481 AFLQILDLADNNLSGTIP---NCIHNLTAMA-TVNPFTGNAIEYSFPLNSTIGPGT-VTE 535
             LQ LDL+ N+  G++P     +H L  +  + N F+GN      P   TIG  T +TE
Sbjct: 565 KMLQRLDLSRNSFIGSLPPELGSLHQLEILRLSENRFSGN-----IPF--TIGNLTHLTE 617

Query: 536 QELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQ-SLNLSYNIFTGRIP 594
                                 +    NLFSG++P  L  L ++Q ++NLSYN F+G IP
Sbjct: 618 ----------------------LQMGGNLFSGSIPPQLGLLSSLQIAMNLSYNDFSGEIP 655

Query: 595 ETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSSTQLQSFNASC 654
             IG +  L  +  + N  +GEIP +  +L+ L   N S N LTG++P +   Q+   + 
Sbjct: 656 PEIGNLHLLMYLSLNNNHLSGEIPTTFENLSSLLGCNFSYNNLTGQLPHTQIFQNMTLTS 715

Query: 655 FLGNN-LCGAPLPKNCTDENVSIP 677
           FLGN  LCG  L ++C   + S P
Sbjct: 716 FLGNKGLCGGHL-RSCDPSHSSWP 738

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  214 bits (545), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 210/700 (30%), Positives = 320/700 (45%), Gaps = 62/700 (8%)

Query: 3   PSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYN 62
           P ++ L+LS+  L       +     L  LDLS+N      +P  +   S L  L L  N
Sbjct: 73  PEVLSLNLSSMVLSGKLSPSIGGLVHLKQLDLSYNGLSGK-IPKEIGNCSSLEILKLNNN 131

Query: 63  NFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMAR 122
            F G IP  +  L SL++L +  N  S S+P     L  L  L    N++ G++PRS+  
Sbjct: 132 QFDGEIPVEIGKLVSLENLIIYNNRISGSLPVEIGNLLSLSQLVTYSNNISGQLPRSIG- 190

Query: 123 LCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSL 182
             NL+RL    A  N     +     GC S  L  L LA + +SG L  ++G  K L  +
Sbjct: 191 --NLKRLTSFRAGQNMISGSLPSEIGGCES--LVMLGLAQNQLSGELPKEIGMLKKLSQV 246

Query: 183 DLSNNSIVG--PR---------VLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKV 231
            L  N   G  PR          L LY N+L G + +    +L  L    +  N L   +
Sbjct: 247 ILWENEFSGFIPREISNCTSLETLALYKNQLVGPIPK-ELGDLQSLEFLYLYRNGLNGTI 305

Query: 232 KRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLY 291
            R+       IE+      +    PL L + + L+ L LF + ++GT P  L  +   L 
Sbjct: 306 PREIGNLSYAIEIDFSENALTGEIPLELGNIEGLELLYLFENQLTGTIPVEL-STLKNLS 364

Query: 292 LLDLGHNQIHGELT-NLTKASQLSYLSLIANNFSGSLPLI---SSNLTVLELSGNSLSGP 347
            LDL  N + G +         L  L L  N+ SG++P      S+L VL++S N LSG 
Sbjct: 365 KLDLSINALTGPIPLGFQYLRGLFMLQLFQNSLSGTIPPKLGWYSDLWVLDMSDNHLSGR 424

Query: 348 IFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSL 407
           I  +LC   N    +  L L  N L G +P    + + L+ L L+ N   G  P++L   
Sbjct: 425 IPSYLCLHSN----MIILNLGTNNLSGNIPTGITTCKTLVQLRLARNNLVGRFPSNLCKQ 480

Query: 408 SSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSN 467
            ++ ++ L +NR  G+IP  + NC++L  L + +N   G +P   G   S++  L + SN
Sbjct: 481 VNVTAIELGQNRFRGSIPREVGNCSALQRLQLADNGFTGELPREIG-MLSQLGTLNISSN 539

Query: 468 NFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNST 527
              G +P+E+ +   LQ LD+  NN SGT+P+ + +L  +  +   + N +  + P+   
Sbjct: 540 KLTGEVPSEIFNCKMLQRLDMCCNNFSGTLPSEVGSLYQLELLK-LSNNNLSGTIPV--- 595

Query: 528 IGPGTVTEQELVVTKGVAADYNEILNLVRIID--FSKNLFSGTLPMGLTNLKAVQ-SLNL 584
                                  + NL R+ +     NLF+G++P  L +L  +Q +LNL
Sbjct: 596 ----------------------ALGNLSRLTELQMGGNLFNGSIPRELGSLTGLQIALNL 633

Query: 585 SYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSS 644
           SYN  TG IP  +  +  LE +  + N  +GEIP S ++L+ L   N S N LTG IP  
Sbjct: 634 SYNKLTGEIPPELSNLVMLEFLLLNNNNLSGEIPSSFANLSSLLGYNFSYNSLTGPIP-- 691

Query: 645 TQLQSFNASCFLGNN-LCGAPLPKNCTDENVSIPEDVNGE 683
             L++ + S F+GN  LCG PL   C       P    G+
Sbjct: 692 -LLRNISMSSFIGNEGLCGPPL-NQCIQTQPFAPSQSTGK 729

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  214 bits (544), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 204/672 (30%), Positives = 311/672 (46%), Gaps = 71/672 (10%)

Query: 2   LPSLVELDLSNCQLHHFP-QLPVANF---STLTTLDLSHNQFDNSFVPAWVFGLSRLHFL 57
           LP L+ LDLS+   +HF   LP + F     L++LD+S+N      +P  +  LS L  L
Sbjct: 136 LPQLLYLDLSD---NHFSGSLPPSFFISLPALSSLDVSNNSLSGE-IPPEIGKLSNLSNL 191

Query: 58  NLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIP 117
            +G N+F G IP  + N++ LK+   P   F+  +PK   +L HL  L LSYN L+  IP
Sbjct: 192 YMGLNSFSGQIPSEIGNISLLKNFAAPSCFFNGPLPKEISKLKHLAKLDLSYNPLKCSIP 251

Query: 118 RSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFK 177
           +S   L NL                               L L S+ + G +  +LG  K
Sbjct: 252 KSFGELHNL-----------------------------SILNLVSAELIGLIPPELGNCK 282

Query: 178 NLDSLDLSNNSIVGPRVLQL----------YLNKLHGTLSEIHFANLTKLSVFLVGANKL 227
           +L SL LS NS+ GP  L+L            N+L G+L          L   L+  N+ 
Sbjct: 283 SLKSLMLSFNSLSGPLPLELSEIPLLTFSAERNQLSGSLPS-WMGKWKVLDSLLLANNRF 341

Query: 228 TLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSA 287
           + ++  +      L  L L S  +    P  L     L+ +DL  + +SGT    +    
Sbjct: 342 SGEIPHEIEDCPMLKHLSLASNLLSGSIPRELCGSGSLEAIDLSGNLLSGTI-EEVFDGC 400

Query: 288 SQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLP---LISSNLTVLELSGNSL 344
           S L  L L +NQI+G +        L  L L +NNF+G +P     S+NL     S N L
Sbjct: 401 SSLGELLLTNNQINGSIPEDLWKLPLMALDLDSNNFTGEIPKSLWKSTNLMEFTASYNRL 460

Query: 345 SGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSL 404
            G    +L   I     LK L L  N L G++P       +L  L+L+ N F G +P  L
Sbjct: 461 EG----YLPAEIGNAASLKRLVLSDNQLTGEIPREIGKLTSLSVLNLNANMFQGKIPVEL 516

Query: 405 GSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVL--- 461
           G  +SL +L L  N L G IP  +     L  L +  N + G+IPS     F ++ +   
Sbjct: 517 GDCTSLTTLDLGSNNLQGQIPDKITALAQLQCLVLSYNNLSGSIPSKPSAYFHQIEMPDL 576

Query: 462 --------LILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPF 513
                     L  N   GP+P EL +   L  + L++N+LSG IP  +  LT + T+   
Sbjct: 577 SFLQHHGIFDLSYNRLSGPIPEELGECLVLVEISLSNNHLSGEIPASLSRLTNL-TILDL 635

Query: 514 TGNAIEYSFP--LNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPM 571
           +GNA+  S P  + +++    +      +   +   +  + +LV++ + +KN   G +P 
Sbjct: 636 SGNALTGSIPKEMGNSLKLQGLNLANNQLNGHIPESFGLLGSLVKL-NLTKNKLDGPVPA 694

Query: 572 GLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLN 631
            L NLK +  ++LS+N  +G +   + TM  L  +    NKFTGEIP  + +LT L +L+
Sbjct: 695 SLGNLKELTHMDLSFNNLSGELSSELSTMEKLVGLYIEQNKFTGEIPSELGNLTQLEYLD 754

Query: 632 LSNNYLTGKIPS 643
           +S N L+G+IP+
Sbjct: 755 VSENLLSGEIPT 766

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  210 bits (534), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 205/677 (30%), Positives = 302/677 (44%), Gaps = 96/677 (14%)

Query: 23  VANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLG 82
           +     L  L++S N F +  +P  +     L  L+L  N F G IP  L  + +LK L 
Sbjct: 87  ICKLHGLRKLNVSTN-FISGPIPQDLSLCRSLEVLDLCTNRFHGVIPIQLTMIITLKKLY 145

Query: 83  LPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEI-S 141
           L  N+   S+P+    L+ L+ L +  N+L G IP SMA+L  LR +  G    +  I S
Sbjct: 146 LCENYLFGSIPRQIGNLSSLQELVIYSNNLTGVIPPSMAKLRQLRIIRAGRNGFSGVIPS 205

Query: 142 EILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLDLSNNSIVGP--------- 192
           EI    SGC S  L+ L LA + + G L  QL + +NL  L L  N + G          
Sbjct: 206 EI----SGCES--LKVLGLAENLLEGSLPKQLEKLQNLTDLILWQNRLSGEIPPSVGNIS 259

Query: 193 --RVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCD 250
              VL L+ N   G++       LTK+    +  N+LT ++ R+        E+      
Sbjct: 260 RLEVLALHENYFTGSIPR-EIGKLTKMKRLYLYTNQLTGEIPREIGNLIDAAEIDFSENQ 318

Query: 251 VGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGEL-TNLTK 309
           +    P       +L+ L LF + + G  P R L   + L  LDL  N+++G +   L  
Sbjct: 319 LTGFIPKEFGHILNLKLLHLFENILLGPIP-RELGELTLLEKLDLSINRLNGTIPQELQF 377

Query: 310 ASQLSYLSLIANNFSGSLP-LIS--SNLTVLELSGNSLSGPIFHFLCY------------ 354
              L  L L  N   G +P LI   SN +VL++S NSLSGPI    C             
Sbjct: 378 LPYLVDLQLFDNQLEGKIPPLIGFYSNFSVLDMSANSLSGPIPAHFCRFQTLILLSLGSN 437

Query: 355 --------TINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGS 406
                    +     L  L L  N L G LP    + QNL AL+L  N  +GN+   LG 
Sbjct: 438 KLSGNIPRDLKTCKSLTKLMLGDNQLTGSLPIELFNLQNLTALELHQNWLSGNISADLGK 497

Query: 407 LSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRS 466
           L +L  L L  N  +G IP  + N T +V  ++  N++ G+IP   G   + +  L L  
Sbjct: 498 LKNLERLRLANNNFTGEIPPEIGNLTKIVGFNISSNQLTGHIPKELGSCVT-IQRLDLSG 556

Query: 467 NNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNS 526
           N F G +  EL  L +L+IL L+DN L+G IP+   +LT +                   
Sbjct: 557 NKFSGYIAQELGQLVYLEILRLSDNRLTGEIPHSFGDLTRLME----------------- 599

Query: 527 TIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQ-SLNLS 585
                                          +    NL S  +P+ L  L ++Q SLN+S
Sbjct: 600 -------------------------------LQLGGNLLSENIPVELGKLTSLQISLNIS 628

Query: 586 YNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSST 645
           +N  +G IP+++G ++ LE +  + NK +GEIP S+ +L  L   N+SNN L G +P + 
Sbjct: 629 HNNLSGTIPDSLGNLQMLEILYLNDNKLSGEIPASIGNLMSLLICNISNNNLVGTVPDTA 688

Query: 646 QLQSFNASCFLGNN-LC 661
             Q  ++S F GN+ LC
Sbjct: 689 VFQRMDSSNFAGNHGLC 705

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZPS9|BRL2_ARATH Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL2 PE=1 SV=1

 Score =  206 bits (523), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 195/618 (31%), Positives = 296/618 (47%), Gaps = 64/618 (10%)

Query: 95  WFDRLTHLEHLSLSYNSLEGRIPRSM-ARLCNLRRLYLGGAKLNQEISEILEIFSGCVSN 153
           +F + ++L  ++LSYN+  G++P  +      L+ L L    +   IS +    S CVS 
Sbjct: 147 FFSKYSNLISITLSYNNFTGKLPNDLFLSSKKLQTLDLSYNNITGPISGLTIPLSSCVS- 205

Query: 154 GLESLALASSSISGHLTDQLGQFKNLDSLDLSNNSIVG--PRVLQLYLNKLHGTLSEIHF 211
            +  L  + +SISG+++D L    NL SL+LS N+  G  P+                 F
Sbjct: 206 -MTYLDFSGNSISGYISDSLINCTNLKSLNLSYNNFDGQIPK----------------SF 248

Query: 212 ANLTKLSVFLVGANKLTLKVKRDWIPP------FQLIELGLRSCDVGSRFPLWLYSQKDL 265
             L  L    +  N+LT      WIPP        L  L L   +     P  L S   L
Sbjct: 249 GELKLLQSLDLSHNRLT-----GWIPPEIGDTCRSLQNLRLSYNNFTGVIPESLSSCSWL 303

Query: 266 QFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGEL-TNLTKASQLSYLSLIANNFS 324
           Q LDL N+ ISG FPN +L+S   L +L L +N I G+  T+++    L      +N FS
Sbjct: 304 QSLDLSNNNISGPFPNTILRSFGSLQILLLSNNLISGDFPTSISACKSLRIADFSSNRFS 363

Query: 325 GSLPLI----SSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCW 380
           G +P      +++L  L L  N ++G I       I++  +L+ + L  N L G +P   
Sbjct: 364 GVIPPDLCPGAASLEELRLPDNLVTGEIPP----AISQCSELRTIDLSLNYLNGTIPPEI 419

Query: 381 MSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVG 440
            + Q L       N   G +P  +G L +L  L L  N+L+G IP    NC+++  +   
Sbjct: 420 GNLQKLEQFIAWYNNIAGEIPPEIGKLQNLKDLILNNNQLTGEIPPEFFNCSNIEWVSFT 479

Query: 441 ENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNC 500
            N + G +P  FG   SR+ +L L +NNF G +P EL     L  LDL  N+L+G IP  
Sbjct: 480 SNRLTGEVPKDFG-ILSRLAVLQLGNNNFTGEIPPELGKCTTLVWLDLNTNHLTGEIPPR 538

Query: 501 I-HNLTAMATVNPFTGNAIEYSFPL-NSTIGPGTVTE-------QELVVTKGVAADYNE- 550
           +     + A     +GN + +   + NS  G G + E       + L +    + D+   
Sbjct: 539 LGRQPGSKALSGLLSGNTMAFVRNVGNSCKGVGGLVEFSGIRPERLLQIPSLKSCDFTRM 598

Query: 551 ----ILNL------VRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTM 600
               IL+L      +  +D S N   G +P  +  + A+Q L LS+N  +G IP TIG +
Sbjct: 599 YSGPILSLFTRYQTIEYLDLSYNQLRGKIPDEIGEMIALQVLELSHNQLSGEIPFTIGQL 658

Query: 601 RSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSSTQLQSFNASCFLGN-N 659
           ++L   D S N+  G+IP+S S+L+FL  ++LSNN LTG IP   QL +  A+ +  N  
Sbjct: 659 KNLGVFDASDNRLQGQIPESFSNLSFLVQIDLSNNELTGPIPQRGQLSTLPATQYANNPG 718

Query: 660 LCGAPLPKNCTDENVSIP 677
           LCG PLP+ C + N  +P
Sbjct: 719 LCGVPLPE-CKNGNNQLP 735

Receptor with a serine/threonine-protein kinase activity, which may transduce extracellular spatial and temporal signals into downstream cell differentiation responses in provascular and procambial cells. In contrast to BRI1, BRL1 and BRL3, it does not bind brassinolide.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O22476|BRI1_ARATH Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidopsis thaliana GN=BRI1 PE=1 SV=1

 Score =  204 bits (520), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 215/734 (29%), Positives = 305/734 (41%), Gaps = 166/734 (22%)

Query: 27  STLTTLDLSHNQFDNSFVPAWVFG-LSRLHFLNLGYN--NFQGPIPEGLQNLTSLKHLGL 83
           ++LT+LDLS N            G  S L FLN+  N  +F G +  GL+ L SL+ L L
Sbjct: 122 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK-LNSLEVLDL 180

Query: 84  PFNHFSSS-VPKWF--DRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEI 140
             N  S + V  W   D    L+HL++S N + G +   ++R  NL  L +     +   
Sbjct: 181 SANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVS----SNNF 234

Query: 141 SEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLN 200
           S  +     C  + L+ L ++ + +SG  +  +     L  L++S+N  VGP        
Sbjct: 235 STGIPFLGDC--SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGP-------- 284

Query: 201 KLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLY 260
                                              IPP  L                   
Sbjct: 285 -----------------------------------IPPLPL------------------- 290

Query: 261 SQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGE----------------- 303
             K LQ+L L  +  +G  P+ L  +   L  LDL  N  +G                  
Sbjct: 291 --KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 348

Query: 304 ---------LTNLTKASQLSYLSLIANNFSGSLPL----ISSNLTVLELSGNSLSGPIFH 350
                    +  L K   L  L L  N FSG LP     +S++L  L+LS N+ SGPI  
Sbjct: 349 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP 408

Query: 351 FLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSL 410
            LC     T  L+ L+L  N   GK+P    +   L++L LS N  +G +P+SLGSLS L
Sbjct: 409 NLCQNPKNT--LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKL 466

Query: 411 VSLHLRKNRLSGTIP------------IL------------LKNCTSLVTLDVGENEVFG 446
             L L  N L G IP            IL            L NCT+L  + +  N + G
Sbjct: 467 RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG 526

Query: 447 NIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTA 506
            IP W G R   + +L L +N+F G +P EL D   L  LDL  N  +GTIP  +   + 
Sbjct: 527 EIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG 585

Query: 507 MATVNPFTGNAIEY-----------------------SFPLN--STIGPGTVTEQELVVT 541
               N   G    Y                       S  LN  ST  P  +T +   V 
Sbjct: 586 KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR---VY 642

Query: 542 KGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMR 601
            G  +   +    +  +D S N+ SG +P  + ++  +  LNL +N  +G IP+ +G +R
Sbjct: 643 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR 702

Query: 602 SLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSSTQLQSFNASCFLGN-NL 660
            L  +D S NK  G IPQ+MS+LT L  ++LSNN L+G IP   Q ++F  + FL N  L
Sbjct: 703 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGL 762

Query: 661 CGAPLPKNCTDENV 674
           CG PLP+ C   N 
Sbjct: 763 CGYPLPR-CDPSNA 775

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. Binds brassinolide, and less effectively castasterone, but not 2,3,22,23-O-tetramethylbrassinolide or ecdysone. May be involved in a feedback regulation of brassinosteroid biosynthesis. Phosphorylates BRI1-associated receptor kinase 1 (BAK1), Transthyretin-Like protein (TTL) and SERK1 on 'Ser-299' and 'Thr-462' in vitro. May have a guanylyl cyclase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	695
224072885	1024	predicted protein [Populus trichocarpa]	0.971	0.659	0.475	1e-158
315436720	1020	verticillium wilt resistance-like protei	0.987	0.672	0.453	1e-158
209970607	1045	M18S-3Ap [Malus floribunda]	0.972	0.646	0.438	1e-157
350284739	978	receptor-like protein [Malus x domestica	0.962	0.684	0.458	1e-155
255543977	1075	serine/threonine-protein kinase bri1, pu	0.962	0.622	0.428	1e-153
209970618	967	M18-S3Bp [Malus floribunda]	0.955	0.686	0.453	1e-152
209970605	974	HB03p [Malus floribunda]	0.965	0.688	0.456	1e-151
209970625	974	HB09p [Malus floribunda]	0.965	0.688	0.453	1e-151
350284759	980	receptor-like protein [Malus micromalus]	0.959	0.680	0.446	1e-151
350284767	965	receptor-like protein [Malus sieversii]	0.946	0.681	0.456	1e-150

>gi|224072885|ref|XP_002303927.1| predicted protein [Populus trichocarpa] gi|222841359|gb|EEE78906.1| predicted protein [Populus trichocarpa]

 Score =  566 bits (1458), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 361/759 (47%), Positives = 456/759 (60%), Gaps = 84/759 (11%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFV-----PAWVFGLSRLHF 56
           LPSLVEL LS CQL   P +   NFS+L+ LDLS N  D S +     P WV  L  L  
Sbjct: 227 LPSLVELHLSYCQLPPVPPILYVNFSSLSILDLSSNYVDESAISMLNFPRWVSHLKTLLS 286

Query: 57  LNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSL---- 112
           LNL  NNFQGPIP GLQNLT LK L L  NHFSSS+P+W     HL+ L+L  N+L    
Sbjct: 287 LNLANNNFQGPIPNGLQNLTLLKALDLSINHFSSSIPEWLYGFEHLKLLNLGSNNLQGVL 346

Query: 113 -----------------------EGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSG 149
                                  EG IP S  +LCNLR L L   KLNQ+I+E+LE+  G
Sbjct: 347 SSAIGNMTSLISLDLSLNHELKFEGGIPGSFKKLCNLRTLSLSNVKLNQDIAEVLEVLLG 406

Query: 150 CVSNGLESLALASSSISGHLTDQLGQFKNLDSLDLSNNSIVGP-----------RVLQLY 198
           CVS  +ESL LA   + G LT+ LG+F+NL  L L +NSI GP           R L L 
Sbjct: 407 CVSEEVESLDLAGCLLFGQLTNHLGKFRNLAYLGLRSNSISGPIPMALGELVSLRSLVLS 466

Query: 199 LNKLHGTL------------------------SEIHFANLTKLSVFLVGANKLTLKVKRD 234
            NKL+GTL                        SE+HFANL  L  F    N+L L+V  D
Sbjct: 467 DNKLNGTLPKSFGELTKLEEMDISHNLFQGEVSEVHFANLKNLRNFSAAGNQLNLRVSPD 526

Query: 235 WIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLD 294
           WIPP QL+ + LRS +VG +FP W+   + L +LD+ NS IS T P      + ++  L+
Sbjct: 527 WIPP-QLVFIDLRSWNVGPQFPKWVRPLEHLSYLDISNSSISSTIPIWFWTMSFRMEYLN 585

Query: 295 LGHNQIHGELTNLTK---ASQLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHF 351
           L HNQI G + +  K    +    + L +N F G LP I SN+  L+LS NS SG + +F
Sbjct: 586 LSHNQIQGVIPSKLKLDFTASYPLVDLSSNQFKGPLPSIFSNVGALDLSNNSFSGSMLNF 645

Query: 352 LCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLV 411
           LC+ I+E   ++ L L  N+L G +PDCW S+Q L+A+ LSNNK +GN+P S+G+LS L 
Sbjct: 646 LCHKIDELKNMQVLNLGENLLSGVIPDCWSSWQYLVAIKLSNNKLSGNIPDSIGALSLLE 705

Query: 412 SLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDG 471
           SLH+R + LSG +PI LKNCT L+TLDV ENE+ G++P+W G+RFS MV+L +R+N F G
Sbjct: 706 SLHIRNSSLSGKLPISLKNCTKLITLDVAENELVGSMPAWIGKRFSSMVVLNMRANKFHG 765

Query: 472 PLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPG 531
            +P ELC+LA LQILDLA N LS +IP C + L+AMAT N   G            +  G
Sbjct: 766 RIPRELCNLASLQILDLAHNRLSWSIPTCFNKLSAMATRNDSLGKIY---------LDSG 816

Query: 532 TVT-EQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFT 590
           + T +  L+V KG   +Y+ IL  VR ID S N   G +P  +T L  +QSLNLS N  T
Sbjct: 817 SSTFDNVLLVMKGKVVEYSTILKFVRSIDLSSNALCGEIPEEVTRLSELQSLNLSQNSLT 876

Query: 591 GRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSSTQLQSF 650
           GRIPE IG++R LES+DFSVN+ +GEIPQSMS LTFL+HLNLS+N L G+IPS TQLQSF
Sbjct: 877 GRIPEGIGSLRYLESMDFSVNQLSGEIPQSMSDLTFLSHLNLSDNRLRGRIPSGTQLQSF 936

Query: 651 NASCFLGNNLCGAPLPKNCTDENVSIPEDVNGEEDEDEN 689
             S F GN LCG PL KNC+ +N      V  E +ED N
Sbjct: 937 GPSSFSGNELCGPPLSKNCSVDN---KFHVEHEREEDGN 972

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|315436720|gb|ADU18533.1| verticillium wilt resistance-like protein [Gossypium barbadense]

 Score =  564 bits (1453), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 343/757 (45%), Positives = 460/757 (60%), Gaps = 71/757 (9%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
           LPSLVE+ LS CQLH  P     NFS+L+ LDLS N F N  +P W+F L+ L  L+L +
Sbjct: 222 LPSLVEIHLSGCQLHRLPLQADVNFSSLSILDLSSNSFSNPLIPGWIFKLNSLLSLDLSH 281

Query: 62  NNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKW------------------------FD 97
           NNFQG +P GL++L+SL++L L +N+F S++P W                        F 
Sbjct: 282 NNFQGQLPHGLRSLSSLRYLNLYWNNFKSAIPSWLYGLTSLEFLNLGSNYFHGSISNGFQ 341

Query: 98  RLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFS--GCVSNGL 155
            LT L  L LS N L G +P SM  LC+L+++ L G  L++++SEIL+  S  GC+ NGL
Sbjct: 342 NLTSLTTLDLSDNELTGAVPNSMGSLCSLKKIKLSGLHLSRDLSEILQALSSPGCLLNGL 401

Query: 156 ESLALASSSISGHLTDQLGQFKNLDSLDLSNNSIVGP-----------RVLQLYLNKLHG 204
           ESL L S  I GHLTD++  FKNL  L LS NSI G            R L L  N+++G
Sbjct: 402 ESLYLDSCEIFGHLTDRILLFKNLADLSLSRNSISGSIPASLGLLASLRTLDLSQNRVNG 461

Query: 205 TL------------------------SEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQ 240
           TL                        SE+HFANLT+L +F    N L L+   +W+PPFQ
Sbjct: 462 TLPESIGQLWKMEKLWLSHNMLEGVVSEVHFANLTRLRLFQASGNPLVLEASPEWVPPFQ 521

Query: 241 LIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQI 300
           L  + L S  +G +FP WL SQ+D  +LD+  +GI  TFPN     ++  + L+L HNQI
Sbjct: 522 LGVMALSSWHLGPKFPSWLRSQRDFVYLDISVTGIIDTFPNWFWNLSTIYFSLNLSHNQI 581

Query: 301 HGELTN---LTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTIN 357
           +GEL +    +  + L Y+ L  N+F G LP +SS +  L+LS N  SGPI + LC  + 
Sbjct: 582 YGELPHRIGTSPVADLVYVDLSFNHFDGPLPCLSSKVNTLDLSSNLFSGPISNLLCCKME 641

Query: 358 ETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRK 417
           E   L+ L L  N L G++PDCWM++ N++++DL NN  +G +P+S+GSL+ L SLHLRK
Sbjct: 642 EPYWLETLHLADNHLSGEIPDCWMNWPNMVSVDLENNSLSGVIPSSMGSLNLLQSLHLRK 701

Query: 418 NRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTEL 477
           N LSG +P  L+NCTSL+ +D+GEN   GNIP W GE+ S  +++ L SN F G +P  L
Sbjct: 702 NNLSGVLPSSLQNCTSLLAIDLGENHFVGNIPGWIGEKLSDSIIISLGSNRFQGQIPDNL 761

Query: 478 CDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQE 537
           C L++L ILDLA NNLSGTIP C  NL+AMA  N  + N I Y+F        GT  E  
Sbjct: 762 CSLSYLTILDLAHNNLSGTIPKCFMNLSAMA-ANQNSSNPISYAFG-----HFGTSLETL 815

Query: 538 LVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETI 597
           L++ KG+  +Y+  L LV  +D S N  +G +P G+T+L  ++ LNLS N   GRIP+ I
Sbjct: 816 LLMIKGILLEYSSTLQLVTSMDLSDNNLAGEIPAGMTDLLGLRFLNLSNNQLKGRIPKNI 875

Query: 598 GTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSSTQLQSFNASCFLG 657
           G +R LESID S N+  GEIP SMS+LTFL++LNLS N LTGKIPSSTQLQSF+ S + G
Sbjct: 876 GNLRLLESIDLSRNQLRGEIPPSMSALTFLSYLNLSENNLTGKIPSSTQLQSFDISSYDG 935

Query: 658 NNLCGAPLPKNC-TDENVSIPEDVNGEEDEDENDVDY 693
           N+LCG PL + C TD   S   + N   + D  +VD+
Sbjct: 936 NHLCGPPLLEICSTDATTSSDHNNNENNEGDGLEVDW 972

Source: Gossypium barbadense

Species: Gossypium barbadense

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209970607|gb|ACJ03066.1| M18S-3Ap [Malus floribunda]

 Score =  560 bits (1443), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 335/764 (43%), Positives = 440/764 (57%), Gaps = 88/764 (11%)

Query: 1   MLPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLG 60
           MLPSLVELD+SNCQLH    LP  NF++L  LDLS N+F NS +P WVF +  L  L L 
Sbjct: 222 MLPSLVELDMSNCQLHQITPLPTTNFTSLVVLDLSGNRF-NSLMPMWVFSIKNLVSLRLI 280

Query: 61  YNNFQGPIPE------------------------------------------------GL 72
           Y  FQGPIP                                                  +
Sbjct: 281 YCWFQGPIPSISQNITSLREIDLSLNSISLDPIPKWLFNQKDLALSLESNQLTGQLPSSI 340

Query: 73  QNLTSLKHLGLPFNHFSSSVPKWF------------------------DRLTHLEHLSLS 108
           QN+T LK L L  N F+S++P+W                           +T L +L L 
Sbjct: 341 QNMTGLKVLNLGSNDFNSTIPEWLYSLNNLESLLLSSNALRGEISSSIGNMTSLVNLHLD 400

Query: 109 YNSLEGRIPRSMARLCNLRRLYLGGAKLN-QEISEILEIFSGCVSNGLESLALASSSISG 167
            N LEG+IP S+  LC L+ L L       Q  S I E  S C  NG++SL+L  ++ISG
Sbjct: 401 NNLLEGKIPNSLGHLCKLKDLDLSKNHFTVQRPSVIFESLSRCGPNGIKSLSLRYTNISG 460

Query: 168 HLTDQLGQFKNLDSLDLSNNSIVG---PRVLQLYL--------NKLHGTLSEIHFANLTK 216
            +   LG   +L+ LD+S N   G     + QL +        N L   +SE+ F+NLTK
Sbjct: 461 PIPMSLGNLSSLEKLDISGNQFNGTFTEVIGQLKMLTDLDISNNSLEDAVSEVSFSNLTK 520

Query: 217 LSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGIS 276
           L  F+   N  TLK  RDW+PPFQL  L L S  +G  +P+WL +Q  L  L L  +GIS
Sbjct: 521 LKHFIANGNSFTLKTSRDWVPPFQLEILQLDSWHLGPEWPMWLRTQTQLTRLSLSCTGIS 580

Query: 277 GTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLISSNLTV 336
            T P       S++  L+L HNQ++G++ N+  A  +S + L +N+F+G+LP++ ++L  
Sbjct: 581 STVPTWFWNLTSKVRYLNLSHNQLYGQIQNIV-AGPMSVVDLSSNHFTGALPIVPTSLFW 639

Query: 337 LELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKF 396
           L+LS +S SG +FHF C   +E  +L FL L  N+L GK+PDCWMS+Q L  L+L NN  
Sbjct: 640 LDLSNSSFSGSVFHFFCDRPDEPRQLHFLHLGNNLLSGKVPDCWMSWQYLSFLNLENNNL 699

Query: 397 TGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERF 456
           TGN+P S+G L  L SLHLR N L G +P  L+NCT L  +D+GEN   G+IP W G+  
Sbjct: 700 TGNVPMSMGYLDWLESLHLRNNHLYGELPHSLQNCTRLSVVDLGENGFSGSIPIWIGKSL 759

Query: 457 SRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGN 516
           S + +L LRSN F+G +P E+C L  LQILDLA N LSG IP C HNL+AMA  +  + +
Sbjct: 760 SELQILNLRSNKFEGDIPNEVCYLTSLQILDLAHNKLSGMIPRCFHNLSAMADFSE-SRD 818

Query: 517 AIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNL 576
           A  Y   LN    P +VT + ++VTKG   +Y +IL  V+ +D S N   G +P  LT+L
Sbjct: 819 ASVYVI-LNGISVPLSVTAKAILVTKGREMEYGKILKFVKFMDLSCNFMYGEIPEELTDL 877

Query: 577 KAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNY 636
            A++SLNLS N FTGRIP  IG M  LES+DFS+N+  GEIPQSM++LTFL+HLNLSNN 
Sbjct: 878 LALKSLNLSNNHFTGRIPSKIGNMAQLESLDFSMNQLDGEIPQSMTNLTFLSHLNLSNNN 937

Query: 637 LTGKIPSSTQLQSFNASCFLGNNLCGAPLPKNCTDENVSIPEDV 680
           LTG+IP STQLQS + S F+GN LCGAPL KNC++  V  P  V
Sbjct: 938 LTGRIPKSTQLQSLDQSSFVGNELCGAPLNKNCSENGVIPPPTV 981

Source: Malus floribunda

Species: Malus floribunda

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350284739|gb|AEQ27741.1| receptor-like protein [Malus x domestica]

 Score =  555 bits (1429), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 327/713 (45%), Positives = 429/713 (60%), Gaps = 44/713 (6%)

Query: 1   MLPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLG 60
           MLPSLVEL +S CQL   P LP  NF++L  LDLS N F NS +P WVF L  L  L+L 
Sbjct: 213 MLPSLVELIMSRCQLDQIPPLPTPNFTSLVVLDLSRNSF-NSLMPRWVFSLKNLVSLHLS 271

Query: 61  YNNFQGPIPEGLQNLTSLKHLGLPFNHFS-SSVPKWFDRLTHLEHLSLSYNSLEGRIPRS 119
           +  FQGPIP   QN+TSL+ + L FN  S   +PKW      LE LSL  N L G++P S
Sbjct: 272 FCGFQGPIPSISQNITSLREIDLSFNSISLDPIPKWLFNQKILE-LSLESNQLTGQLPSS 330

Query: 120 MARLCNLRRLYLGGAKLNQEISEIL-------------EIFSGCVSNGLESLA------L 160
           +  +  L+ L L G   N  I E L               F G +S+ + +L       L
Sbjct: 331 IQNMTGLKVLNLEGNDFNSTIPEWLYSLNNLESLLLSYNYFCGEISSSIGNLKSLRHFDL 390

Query: 161 ASSSISGHLTDQLGQFKNLDSLDLSNNSIVGPRV-----------LQLYLNKLHGTLSEI 209
           +S+SISG +   LG   +L+ LD+S N + G  +           L +  N L G +SE+
Sbjct: 391 SSNSISGPIPMSLGNLSSLEKLDISGNQLNGTFIEVIGQLKMLMDLDISYNSLEGAMSEV 450

Query: 210 HFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLD 269
            F+NLTKL  F+   N  TLK  RDW+PPFQL  L L S  +G ++P+WL +Q  L+ L 
Sbjct: 451 SFSNLTKLKHFIANGNSFTLKTSRDWVPPFQLEILQLDSWHLGPKWPMWLRTQTQLKELS 510

Query: 270 LFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPL 329
           L  +GIS T P       SQ+  L+L  NQ++G++ N+  A   S + L +N F+G+LP+
Sbjct: 511 LSGTGISSTIPTWFWNLTSQVEYLNLSRNQLYGQIQNIV-AVPFSTVDLSSNQFTGALPI 569

Query: 330 ISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMAL 389
           + ++L  L+LS +S SG +FHF C   +E  KL  L L  N L GK+PDCWMS+Q+L  L
Sbjct: 570 VPTSLMWLDLSNSSFSGSVFHFFCDRPDEPRKLGILHLGNNSLTGKVPDCWMSWQSLSFL 629

Query: 390 DLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIP 449
           +L NN  TGN+P S+G L  + SL+LR N L G +P  L+NCTSL  +D+ EN   G+IP
Sbjct: 630 NLENNNLTGNVPMSMGYLLYIQSLYLRNNHLYGELPHSLQNCTSLSVVDLSENGFSGSIP 689

Query: 450 SWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMAT 509
           +W G+  S + +LILRSN F+G +P E+C L  LQILDLA N LSG IP C HNL+A+A 
Sbjct: 690 TWIGKSLSLLNVLILRSNKFEGDIPNEVCYLTSLQILDLAHNKLSGMIPRCFHNLSALAN 749

Query: 510 VNPFTGNAIEYSFPLNSTIG--PGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSG 567
            +         SF   S  G     +TE  ++VTKG+  +Y+ IL  V+ +D S N   G
Sbjct: 750 FSE--------SFSPTSYWGEVASGLTENAILVTKGIEMEYSTILGFVKGMDLSCNFMYG 801

Query: 568 TLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFL 627
            +P  LT L A+QSLNLS N FTGRIP  IG M  LES+DFS+N+  GEIP SM+ LTFL
Sbjct: 802 EIPEELTGLLALQSLNLSNNRFTGRIPSKIGNMAQLESLDFSMNQLDGEIPPSMTILTFL 861

Query: 628 NHLNLSNNYLTGKIPSSTQLQSFNASCFLGNNLCGAPLPKNCTDENVSIPEDV 680
           +HLNLS N LTG+IP STQLQS + S F+GN LCGAPL KNC++  V  P  V
Sbjct: 862 SHLNLSYNNLTGRIPESTQLQSLDQSSFVGNELCGAPLNKNCSENGVIPPPTV 914

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543977|ref|XP_002513051.1| serine/threonine-protein kinase bri1, putative [Ricinus communis] gi|223548062|gb|EEF49554.1| serine/threonine-protein kinase bri1, putative [Ricinus communis]

 Score =  547 bits (1410), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 330/770 (42%), Positives = 446/770 (57%), Gaps = 101/770 (13%)

Query: 2    LPSLVELDLSNCQL--HHFPQLPVANFSTLTTLDLSHNQFD------------------- 40
            LPSL++L LS CQL    FP     NFS+L  LDLS N F                    
Sbjct: 241  LPSLLQLHLSRCQLGGASFPSTVNLNFSSLAILDLSVNDFQGPIPNSLQNLTSSLKELDL 300

Query: 41   -----NSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFN-HFSSSVPK 94
                 NS +P W++G + L FL+L  N  QG I   + N+TSL  L L  N   S  +P 
Sbjct: 301  GYNSFNSSLPNWLYGFTNLEFLSLNSNRLQGNISSLIGNMTSLITLDLSSNLAISGGIPT 360

Query: 95   WF--------------------------------------------------DRLTHLEH 104
             F                                                  D L H ++
Sbjct: 361  SFKHLCNLRSLVLDTVTLSQKINDVLEILSGCISDELESFSMYSCQLSGYLTDDLGHFKN 420

Query: 105  LS---LSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALA 161
            L+   LSYNS+ G IP+S+  LCNLR L L G + +QEI+++LEI S C +N LESL+L+
Sbjct: 421  LASLDLSYNSISGPIPKSLRHLCNLRSLDLSGNRWSQEINDVLEILSDCPTNVLESLSLS 480

Query: 162  SSSISGHLTDQLGQFKNLDSLDLSNNSIVGP------RVLQLYL-----NKLHGTLSEIH 210
               +SG +   LG+  +L  L LS+N + G       ++ +L +     N L G ++E+H
Sbjct: 481  DCELSGPIPSSLGEMASLIRLSLSSNKLNGTLPESFGQLTRLEIAFFDGNLLEGEVTEVH 540

Query: 211  FANLTKLSVF--LVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQFL 268
            FANLTKL +F   + AN   L+V  +W PPFQL  L LRS  +G +FP WL+S + L+ L
Sbjct: 541  FANLTKLFIFDGSMMANGPVLRVGSNWTPPFQLHYLSLRSWKIGPQFPAWLHSLRYLEIL 600

Query: 269  DLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKAS---QLSYLSLIANNFSG 325
            DL NSGIS T P      +S     +L HNQIHG + N+   S   +++   + +NNF G
Sbjct: 601  DLSNSGISSTIPVWFWDMSSNFAYANLSHNQIHGVIPNVPVVSNDYRITMFDMSSNNFRG 660

Query: 326  SLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQN 385
             +P  SSNL+ L+LS NS +G I +FLCY + E  K++ L L  N+L G++PDCW+S+Q+
Sbjct: 661  PVPYFSSNLSALDLSSNSFTGSIINFLCYKMQEVKKMEVLNLGGNLLSGEIPDCWLSWQS 720

Query: 386  LMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVF 445
            L A++LSNNKFTGN+P S+G+LS L S+H   N LSG IP+ ++NC  L TLD   N++ 
Sbjct: 721  LTAINLSNNKFTGNIPKSIGTLSFLESVHFANNDLSGDIPLSIQNCRKLFTLDFSGNKLV 780

Query: 446  GNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLT 505
            G IPSW G+    M++LILR N   G +P E+C +A LQILDLADNN S  IP+C  N +
Sbjct: 781  GKIPSWIGKSIPDMIILILRGNKLHGQIPEEICRMASLQILDLADNNFSSMIPSCFSNFS 840

Query: 506  AMATVNPFTGNAIEYSFPLNSTIGPGTV-TEQELVVTKGVAADYNEILNLVRIIDFSKNL 564
             M  VN   G ++ +     S +GP  +  +  ++V KG  A+Y+ IL  V+ ID S N 
Sbjct: 841  GMVKVNDSFG-SLTFD---QSNVGPSPILIDSAILVIKGRVAEYSTILGFVKAIDLSNNN 896

Query: 565  FSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSL 624
             SG +PM +T+L  +QSL+ S N  TGRIP+ IG M+SLESIDFS N   GEIP+S+SSL
Sbjct: 897  LSGEIPMNITSLVGLQSLSFSQNSLTGRIPKDIGAMQSLESIDFSQNHLFGEIPESISSL 956

Query: 625  TFLNHLNLSNNYLTGKIPSSTQLQSFNASCFLGNNLCGAPLPKNCTDENV 674
            TFL+HLNLSNN LTGKIPS TQL+ F+ S F+ N+LCG PLP NC+ E +
Sbjct: 957  TFLSHLNLSNNKLTGKIPSGTQLRGFDPSSFMDNDLCGPPLPLNCSKEGI 1006

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209970618|gb|ACJ03070.1| M18-S3Bp [Malus floribunda]

 Score =  543 bits (1400), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 325/717 (45%), Positives = 423/717 (58%), Gaps = 53/717 (7%)

Query: 1   MLPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLG 60
           MLPSLVEL +S C LH  P LP  NF++L  LDLS N F NS +  WVF L  L  + LG
Sbjct: 203 MLPSLVELHMSFCHLHQIPPLPTPNFTSLVVLDLSGNSF-NSLMLRWVFSLKNLVSILLG 261

Query: 61  YNNFQGPIPEGLQNLTSLKHLGLPFNHFS-SSVPKWFDRLTHLEHLSLSYNSLEGRIPRS 119
              FQGPIP   QN+TSLK + L FN  S   +PKW      L  L L  N L G +P S
Sbjct: 262 DCGFQGPIPSISQNITSLKVIDLAFNSISLDPIPKWLFNQKDLA-LDLEGNDLTG-LPSS 319

Query: 120 MARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNL 179
           +  +  L  LYLG  + N  I E L        N LESL L+ +++ G ++  +G  K+L
Sbjct: 320 IQNMTGLIALYLGSNEFNSTILEWLYSL-----NNLESLDLSHNALRGEISSSIGNLKSL 374

Query: 180 DSLDLSNNSIVGPRV------------------------------------LQLYLNKLH 203
              DLS+NSI G R+                                    L +  N L 
Sbjct: 375 RHFDLSSNSISG-RIPMSLGNISSLEQLDISVNQFNGTFTEVIGQLKMLTDLDISYNSLE 433

Query: 204 GTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQK 263
           G +SEI F+NL KL  F+   N  TLK  RDW+PPFQL  L L S  +G  +P+WL +Q 
Sbjct: 434 GVVSEISFSNLIKLKNFVARGNSFTLKTSRDWVPPFQLEILQLDSWHLGPEWPMWLRTQT 493

Query: 264 DLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNF 323
            L+ L L  +GIS T P       SQ+  L+L HNQ++G++ N+   +  S + L +N F
Sbjct: 494 QLKELSLSGTGISSTIPTWFWNLTSQVDYLNLSHNQLYGQIQNIFVGAFPSVVDLGSNQF 553

Query: 324 SGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSY 383
           +G+LP+++++L  L+LS +S SG +FHF C   +E  +L+ L L  N L GK+PDCWMS+
Sbjct: 554 TGALPIVATSLFWLDLSNSSFSGSVFHFFCDRPDEPKQLEILHLGNNFLTGKVPDCWMSW 613

Query: 384 QNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENE 443
           Q L  L+L NN  TGN+P S+G L  L SLHLR N L G +P  L+NCTSL  +D+ EN 
Sbjct: 614 QYLGFLNLENNNLTGNVPMSMGYLQDLESLHLRNNHLYGELPHSLQNCTSLSVVDLSENG 673

Query: 444 VFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHN 503
             G+IP W G+  S + +LILRSN F+G +P E+C L  LQILDLA N LSG IP C HN
Sbjct: 674 FSGSIPIWIGKSLSGLHVLILRSNKFEGDIPNEVCYLKSLQILDLAHNKLSGMIPRCFHN 733

Query: 504 LTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKN 563
           L+A+A  +        +S  +  ++  G V E  ++VTKG   +Y++IL   + +D S N
Sbjct: 734 LSALANFSE------SFSPRIFGSVN-GEVWENAILVTKGTEMEYSKILGFAKGMDLSCN 786

Query: 564 LFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSS 623
              G +P  LT L A+QSLNLS N FTGRIP  IG M  LES+DFS+N+  GEIP SM++
Sbjct: 787 FMYGEIPKELTGLLALQSLNLSNNRFTGRIPSKIGDMAKLESVDFSMNQLDGEIPPSMTN 846

Query: 624 LTFLNHLNLSNNYLTGKIPSSTQLQSFNASCFLGNNLCGAPLPKNCTDENVSIPEDV 680
           LTFL+HLNLS N LTG+IP STQLQS + S FLGN LCGAPL KNC++  V  P  V
Sbjct: 847 LTFLSHLNLSYNNLTGRIPKSTQLQSLDQSSFLGNELCGAPLNKNCSENGVIPPPTV 903

Source: Malus floribunda

Species: Malus floribunda

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209970605|gb|ACJ03065.1| HB03p [Malus floribunda]

 Score =  542 bits (1397), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 327/716 (45%), Positives = 428/716 (59%), Gaps = 45/716 (6%)

Query: 1   MLPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLG 60
           MLP LV+L +S+C LHH P LP  NF++L  LDLS+N F NS +P WVF +  L  L L 
Sbjct: 212 MLPCLVQLIMSDCVLHHPPPLPTINFTSLVVLDLSYNSF-NSLMPRWVFNIKNLVSLRLT 270

Query: 61  YNNFQGPIPEGLQNLTSLKHLGLPFNHFS-SSVPKWFDRLTHLEHLSLSYNSLEGRIPRS 119
             +FQGPIP   QN+TSL+ + L FN  +    PKW      LE L+L  N L G++P S
Sbjct: 271 GCDFQGPIPGISQNITSLREIDLSFNSINLDPDPKWLFNQKILE-LNLEANQLSGQLPSS 329

Query: 120 MARLCNLRRLYLGGAKLNQEISEIL-------------EIFSGCVSNGLESLA------L 160
           +  +  L+ L L     N  ISE L                 G +S+ + +L       L
Sbjct: 330 IQNMTCLKVLNLRENDFNSTISEWLYSLNNLESLLLSHNALRGEISSSIGNLKSLRHFDL 389

Query: 161 ASSSISGHLTDQLGQFKNLDSLDLSNN-------SIVGPRVLQLYL----NKLHGTLSEI 209
           +S+SISG +   LG   +L  LD+S N        ++G   L  YL    N   G +SE+
Sbjct: 390 SSNSISGSIPMSLGNLSSLVELDISGNQFKGTFIEVIGKLKLLAYLDISYNSFEGMVSEV 449

Query: 210 HFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLD 269
            F+NLTKL  F+   N  TL   RDW+ PFQL  L L S  +G  +P+WL +Q  L  L 
Sbjct: 450 SFSNLTKLKHFIAKGNSFTLNTSRDWLHPFQLESLRLDSWHLGPEWPMWLRTQTQLTDLS 509

Query: 270 LFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPL 329
           L  +GIS T P        QL  L+L HNQ++GE+ N+  A   S + L +N F+G+LP+
Sbjct: 510 LSGTGISSTIPTWFWNLTFQLGYLNLSHNQLYGEIQNIVVAP-YSVVDLGSNQFTGALPI 568

Query: 330 ISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMAL 389
           + ++L  L+LS +S SG +FHF C    E  +L  L L  N+L GK+PDCW S+Q L AL
Sbjct: 569 VPTSLAWLDLSNSSFSGSVFHFFCDRPEEAKQLSILHLGNNLLTGKVPDCWRSWQYLAAL 628

Query: 390 DLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIP 449
           +L NN  TGN+P S+  L  L SLHLR N L G +P  L+NC+SL  +D+G N   G+IP
Sbjct: 629 NLENNLLTGNVPMSMRYLQQLESLHLRNNHLYGELPHSLQNCSSLSVVDLGGNGFVGSIP 688

Query: 450 SWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMAT 509
            W G+  SR+ +L LRSN F+G +P+E+C L  LQILDLA N LSGTIP C HNL+AMAT
Sbjct: 689 IWMGKSLSRLNVLNLRSNEFEGDIPSEICHLKNLQILDLARNKLSGTIPRCFHNLSAMAT 748

Query: 510 VNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTL 569
           ++         SF  + T    T  E  +VVTKG+  +Y EIL  V+ +D S N   G +
Sbjct: 749 LSE--------SFS-SITFMISTSVEASVVVTKGIEVEYTEILGFVKGMDLSCNFMYGEI 799

Query: 570 PMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNH 629
           P  LT+L A+QSLNLS+N FTGR+P  IG M  LES+DFS+N+  GEIP SM++LTFL+H
Sbjct: 800 PEELTDLLALQSLNLSHNRFTGRVPSKIGNMAMLESLDFSMNQLDGEIPPSMTNLTFLSH 859

Query: 630 LNLSNNYLTGKIPSSTQLQSFNASCFLGNNLCGAPLPKNCTDENVSIPEDVNGEED 685
           LNLS N LTG+IP STQLQS + S F+GN LCGAPL KNC+   V  P  V  E+D
Sbjct: 860 LNLSYNNLTGRIPKSTQLQSLDQSSFVGNELCGAPLNKNCSANGVIPPPTV--EQD 913

Source: Malus floribunda

Species: Malus floribunda

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209970625|gb|ACJ03073.1| HB09p [Malus floribunda]

 Score =  541 bits (1395), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 325/716 (45%), Positives = 426/716 (59%), Gaps = 45/716 (6%)

Query: 1   MLPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLG 60
           MLP LVEL +S+C LH  P LP  NF++L  LDLS+N F NS  P WVF +  L  L+L 
Sbjct: 212 MLPCLVELIMSDCVLHQTPPLPTINFTSLVVLDLSYNSF-NSLTPRWVFSIKNLVSLHLT 270

Query: 61  YNNFQGPIPEGLQNLTSLKHLGLPFNHFS-SSVPKWFDRLTHLEHLSLSYNSLEGRIPRS 119
              FQGPIP   QN+TSL+ + L FN  S   +PKW      LE L+L  N + G++P S
Sbjct: 271 GCGFQGPIPGISQNITSLREIDLSFNSISLDPIPKWLFNKKILE-LNLEANQITGQLPSS 329

Query: 120 MARLCNLRRLYLGGAKLNQEISEIL-------------EIFSGCVSNGLESLA------L 160
           +  +  L+ L L     N  I + L                 G +S+ + +L       L
Sbjct: 330 IQNMTCLKVLNLRENDFNSTIPKWLYSLNNLESLLLSHNALRGEISSSIGNLKSLRHFDL 389

Query: 161 ASSSISGHLTDQLGQFKNLDSLDLSNN-------SIVGPRVLQLYL----NKLHGTLSEI 209
           + +SISG +   LG   +L  LD+S N        ++G   L  YL    N   G +SE+
Sbjct: 390 SGNSISGPIPMSLGNLSSLVELDISGNQFNGTFIEVIGKLKLLAYLDISYNSFEGMVSEV 449

Query: 210 HFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLD 269
            F++LTKL  F+   N  TLK  R+W+PPFQL  L L S  +G  +P+WL +Q  L  L 
Sbjct: 450 SFSHLTKLKHFIAKGNSFTLKTSRNWLPPFQLESLQLDSWHLGPEWPMWLRTQTQLTDLS 509

Query: 270 LFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPL 329
           L  +GIS T P        QL  L+L HNQ++GE+ N+  A+  S + L +N F+G+LP+
Sbjct: 510 LSGTGISSTIPTWFWNLTFQLGYLNLSHNQLYGEIQNIV-AAPYSVVDLGSNKFTGALPI 568

Query: 330 ISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMAL 389
           + ++L  L+LS +S SG +FHF C    E  +L  L L  N+L GK+PDCW S+Q L AL
Sbjct: 569 VPTSLAWLDLSNSSFSGSVFHFFCDRPEEAKQLSILHLGNNLLTGKVPDCWRSWQGLAAL 628

Query: 390 DLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIP 449
           +L NN  TGN+P S+  L  L SLHLR N L G +P  L+NC+SL  +D+G N   G+IP
Sbjct: 629 NLENNLLTGNVPMSMRYLQQLESLHLRNNHLYGELPHSLQNCSSLSVVDLGGNGFVGSIP 688

Query: 450 SWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMAT 509
            W G+  SR+ +L LRSN F+G +P+E+C L  LQILDLA N LSGTIP C HNL+AMAT
Sbjct: 689 IWIGKSLSRLNVLNLRSNEFEGDIPSEICYLKNLQILDLARNKLSGTIPRCFHNLSAMAT 748

Query: 510 VNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTL 569
            +         SF  + T   GT  E  +VVTKG   +Y EIL  V+ +D S N   G +
Sbjct: 749 FSE--------SFS-SITFRTGTSVEASIVVTKGREVEYTEILGFVKGMDLSCNFMYGEI 799

Query: 570 PMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNH 629
           P  LT+L A+QSLNLS+N FTGR+P  IG M  LES+DFS+N+  GEIP SM++LTFL+H
Sbjct: 800 PEELTDLLALQSLNLSHNRFTGRVPSKIGNMAMLESLDFSMNQLDGEIPPSMTNLTFLSH 859

Query: 630 LNLSNNYLTGKIPSSTQLQSFNASCFLGNNLCGAPLPKNCTDENVSIPEDVNGEED 685
           LNLS N LTG+IP STQLQS + S F+GN LCGAPL KNC    V  P  V  E+D
Sbjct: 860 LNLSYNNLTGRIPKSTQLQSLDQSSFVGNELCGAPLNKNCRANGVIPPPTV--EQD 913

Source: Malus floribunda

Species: Malus floribunda

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350284759|gb|AEQ27751.1| receptor-like protein [Malus micromalus]

 Score =  540 bits (1392), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 323/723 (44%), Positives = 425/723 (58%), Gaps = 56/723 (7%)

Query: 1   MLPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLG 60
           MLPSLVEL +S C LH  P LP  NF++L  LDLS N F NS +  WVF L  L  ++L 
Sbjct: 215 MLPSLVELHMSYCHLHQIPPLPTPNFTSLVVLDLSGNSF-NSLMSRWVFSLKNLISIHLS 273

Query: 61  YNNFQGPIPEGLQNLTSLKHLGLPFNHFS-SSVPKWFDRLTHLEHLSLSYNSLEGRIPRS 119
              FQGPIP   QN+TSL+ + L  N+ S   +PKW      LE LSL  N L G++P S
Sbjct: 274 DCGFQGPIPSISQNITSLREIDLSSNYISLDLIPKWLFNQKFLE-LSLEANQLTGQLPSS 332

Query: 120 MARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNL 179
           +  +  L  L LG  + N  I E L        N LESL L+ +++ G ++  +G  K+L
Sbjct: 333 IQNMTGLIALNLGWNEFNSTIPEWLYSL-----NNLESLHLSHNALRGEISSSIGNLKSL 387

Query: 180 DSLDLSNNSIVGP-----------------------------------RVLQLYLNKLHG 204
             LDLSNNSI GP                                     L +  N L G
Sbjct: 388 RHLDLSNNSISGPIPMSLGNLSSLEKLDISVNQFNGTFTEVIDQLKMLTDLDISYNSLEG 447

Query: 205 TLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKD 264
            +SE+ F+NL KL  F+   N  TLK  RDW+PPFQL  L L S  +G ++P+WL +Q  
Sbjct: 448 VVSEVSFSNLIKLKHFVAKGNSFTLKTSRDWVPPFQLEILQLDSWHLGPKWPMWLRTQTQ 507

Query: 265 LQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFS 324
           L+ L L  +GIS T P       SQ+  L+L  NQ++G++ N+  A   S + L +N F+
Sbjct: 508 LKELSLSGTGISSTIPTWFWNLTSQVEYLNLSRNQLYGQIQNIV-AGPSSVVDLSSNQFT 566

Query: 325 GSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQ 384
           G+LP++ ++L  L+LS +S S  +FHF C   +E  +L  L L  N+L GK+PDCWMS+Q
Sbjct: 567 GALPIVPTSLFFLDLSRSSFSESVFHFFCDRPDEPKQLSVLNLGNNLLTGKVPDCWMSWQ 626

Query: 385 NLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEV 444
           +L  L+L NN  TGN+P S+G L  L SLHLR N L G +P  L+NCT L  +D+ EN  
Sbjct: 627 HLRFLNLENNNLTGNVPMSMGYLQYLGSLHLRNNHLYGELPHSLQNCTWLSVVDLSENGF 686

Query: 445 FGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNL 504
            G+IP W G+  S + +L LRSN F+G +P E+C L  LQILDLA N LSG IP C HNL
Sbjct: 687 SGSIPIWIGKSLSGLNVLNLRSNKFEGDIPNEVCYLKSLQILDLAHNKLSGMIPRCFHNL 746

Query: 505 TAMATVNPFTGNAIEYSFPLNSTIGP--GTVTEQELVVTKGVAADYNEILNLVRIIDFSK 562
           +A+A  +         SF   S  G     ++E  ++VTKG+  +Y+ IL  V+++D S 
Sbjct: 747 SALADFSE--------SFYPTSYWGTNWSELSENAILVTKGIEMEYSRILGFVKVMDLSC 798

Query: 563 NLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMS 622
           N   G +P  LT L A+QSLNLS N FTGRIP  IG M  LE++DFS+N+  GEIP SM+
Sbjct: 799 NFMYGEIPEELTGLLALQSLNLSNNRFTGRIPSNIGNMAWLETLDFSMNQLDGEIPPSMT 858

Query: 623 SLTFLNHLNLSNNYLTGKIPSSTQLQSFNASCFLGNNLCGAPLPKNCTDENVSIPEDVNG 682
           +LTFL+HLNLS N LTG+IP STQLQS + S F+GN LCGAPL KNC+   V  P  V  
Sbjct: 859 NLTFLSHLNLSYNNLTGRIPESTQLQSLDQSSFVGNKLCGAPLNKNCSTNGVIPPPTV-- 916

Query: 683 EED 685
           E+D
Sbjct: 917 EQD 919

Source: Malus micromalus

Species: Malus micromalus

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350284767|gb|AEQ27755.1| receptor-like protein [Malus sieversii]

 Score =  539 bits (1388), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 323/708 (45%), Positives = 425/708 (60%), Gaps = 50/708 (7%)

Query: 1   MLPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLG 60
           MLPSLVEL +S+CQL   P LP  NF++L  LDLS N F NS +  WVF L  L  L+L 
Sbjct: 216 MLPSLVELIMSDCQLVQIPHLPTPNFTSLVVLDLSVNNF-NSLMLKWVFSLKNLVSLHLN 274

Query: 61  YNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWF------------------------ 96
              FQGPIP   QN+T LK L L  N F+S++P+W                         
Sbjct: 275 DCGFQGPIPSISQNMTCLKVLSLLENDFNSTIPEWLYSLNNLESLLLSYNGLHGEISSSI 334

Query: 97  DRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLN-QEISEILEIFSGCVSNGL 155
             +T L +L L+YN LEG+IP S+  LC L+ L L       Q  SEI E  S C  +G+
Sbjct: 335 GNMTSLVNLDLNYNQLEGKIPNSLGHLCKLKVLDLSKNHFTVQRPSEIFESLSRCGPDGI 394

Query: 156 ESLALASSSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLT 215
           +SL+L +++ISG +   LG   NL+ LD+S NS             L G +SE+ F+ LT
Sbjct: 395 KSLSLRNTNISGPIPMSLGNVSNLEKLDISYNS-------------LEGAVSEVSFSKLT 441

Query: 216 KLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGI 275
           KL  F+   N LTLK  +DW+PPFQL  L L S  +G ++P+WL +Q  L+ L LF +GI
Sbjct: 442 KLKHFIAKGNSLTLKTSQDWVPPFQLEILQLDSWHLGPKWPMWLRTQTQLKELSLFGTGI 501

Query: 276 SGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLISSNLT 335
           S T P       S++  L+L HNQ++GE+ N+  A   S++ L +N F G+LP++ ++L 
Sbjct: 502 SSTIPTWFWNLTSKVQYLNLSHNQLYGEIQNIVVAPY-SFVDLGSNQFIGALPIVPTSLL 560

Query: 336 VLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNK 395
            L+LS +S SG +FHF C   +E   L FL L  N+L GK+PDCW ++     L+L NN 
Sbjct: 561 WLDLSNSSFSGSVFHFFCDRPDEPRLLHFLLLGNNLLTGKVPDCWANWSFFEFLNLENNH 620

Query: 396 FTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGER 455
            TGN+P S+G L  L SLHL  N L G +P  L+NCTSL  +D+  N   G+I  W G+ 
Sbjct: 621 LTGNVPMSMGYLPMLESLHLHNNHLYGELPHSLQNCTSLEVVDLSGNGFVGSIQIWMGKS 680

Query: 456 FSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTG 515
              + LL LRSN F+G +P+E+C L  LQILDLA N LSGTIP C HNL+AMA V+    
Sbjct: 681 LPWLSLLNLRSNEFEGDIPSEICYLKSLQILDLAHNKLSGTIPRCFHNLSAMADVS---- 736

Query: 516 NAIEYSFPLNSTI---GPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMG 572
              E+  P +  I      TV E  ++VTKG   +Y++IL  V+ +D S N   G +P  
Sbjct: 737 ---EFFLPTSRFIISDMAHTVLENAILVTKGKEMEYSKILKFVKNLDLSCNFMYGEIPEE 793

Query: 573 LTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNL 632
           LT L A+QSLNLS N FTG+ P  IG M  LES+DFS+N+  GEIP S+++LTFLNHLNL
Sbjct: 794 LTGLLALQSLNLSNNRFTGKFPSKIGNMAQLESLDFSMNQLDGEIPPSITNLTFLNHLNL 853

Query: 633 SNNYLTGKIPSSTQLQSFNASCFLGNNLCGAPLPKNCTDENVSIPEDV 680
           S N LTG+IP  TQLQS + S F+GN LCGAPL KNC++  V  P  V
Sbjct: 854 SYNNLTGRIPEGTQLQSLDQSSFVGNELCGAPLNKNCSENGVIPPPTV 901

Source: Malus sieversii

Species: Malus sieversii

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	695
TAIR|locus:2044767	905	AT2G34930 "AT2G34930" [Arabido	0.935	0.718	0.329	2.9e-71
TAIR|locus:2137296	811	RLP46 "receptor like protein 4	0.913	0.782	0.319	2.6e-70
TAIR|locus:2046357	890	RLP23 "receptor like protein 2	0.933	0.729	0.316	3.2e-65
TAIR|locus:2094603	835	RLP37 "receptor like protein 3	0.929	0.773	0.296	4.7e-64
TAIR|locus:2096349	860	RLP31 "receptor like protein 3	0.920	0.744	0.304	3.3e-63
TAIR|locus:2825384	847	RLP12 "AT1G71400" [Arabidopsis	0.574	0.471	0.327	4.8e-63
TAIR|locus:2087253	884	RLP39 "AT3G24900" [Arabidopsis	0.909	0.714	0.304	1.3e-61
TAIR|locus:2086979	890	RLP42 "receptor like protein 4	0.936	0.731	0.309	7.3e-61
TAIR|locus:2170483	1173	FLS2 "FLAGELLIN-SENSITIVE 2" [	0.936	0.554	0.3	1.2e-60
TAIR|locus:2205005	1019	RLP7 "AT1G47890" [Arabidopsis	0.952	0.649	0.291	2.9e-60

TAIR|locus:2044767 AT2G34930 "AT2G34930" [Arabidopsis thaliana (taxid:3702)]

 Score = 721 (258.9 bits), Expect = 2.9e-71, P = 2.9e-71
 Identities = 230/699 (32%), Positives = 325/699 (46%)

Query:     2 LPSLVELDLSNCQLHHFPQL--PVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNL 59
             + +L EL L N +L + P      A+   L  LDLS N   NS +P W+FGL+ L  L L
Sbjct:   220 ISALKELHLFNSELKNLPPTLSSSADLKLLEVLDLSENSL-NSPIPNWLFGLTNLRKLFL 278

Query:    60 GYNNFQGPIPEGLQNLTSLKHLGLPFN-HFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPR 118
              ++  QG IP G +NL  L+ L L  N      +P     L  L+ L LS N L G+I  
Sbjct:   279 RWDFLQGSIPTGFKNLKLLETLDLSNNLALQGEIPSVLGDLPQLKFLDLSANELNGQIHG 338

Query:   119 SMARLC-----NLRRLYLGGAKLNQEISEILEIFSGCVXXXXXXXXXXXXXXXXXXTDQL 173
              +         +L  L L   KL   + E L    G +                  +  +
Sbjct:   339 FLDAFSRNKGNSLVFLDLSSNKLAGTLPESL----GSLRNLQTLDLSSNSFTGSVPSS-I 393

Query:   174 GQFKNLDSLDLSNNSIVGPRV-----------LQLYLNKLHGTLSEIHFANLTKL-SVFL 221
             G   +L  LDLSNN++ G              L L  N   G L + HF NL  L S+ L
Sbjct:   394 GNMASLKKLDLSNNAMNGTIAESLGQLAELVDLNLMANTWGGVLQKSHFVNLRSLKSIRL 453

Query:   222 VGA--NKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTF 279
                    L  K+   WIPPF+L  + + +C +G  FP+WL  Q  L F+ L N+GI  T 
Sbjct:   454 TTEPYRSLVFKLPSTWIPPFRLELIQIENCRIGL-FPMWLQVQTKLNFVTLRNTGIEDTI 512

Query:   280 PNRLLKS-ASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLE 338
             P+      +S++  L L +N+I G L       +L+ + L +NNF G+ PL S+N T L 
Sbjct:   513 PDSWFSGISSKVTYLILANNRIKGRLPQKLAFPKLNTIDLSSNNFEGTFPLWSTNATELR 572

Query:   339 LSGNSLSGPIFHFLCYTINETM-KLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFT 397
             L  N+ SG     L   I+  M +++ ++L  N   G +P        L  L L  N F+
Sbjct:   573 LYENNFSGS----LPQNIDVLMPRMEKIYLFSNSFTGNIPSSLCEVSGLQILSLRKNHFS 628

Query:   398 GNLPTXXXXXXXXXXXXXRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFS 457
             G+ P               +N LSG IP  L    SL  L + +N + G IP       S
Sbjct:   629 GSFPKCWHRQFMLWGIDVSENNLSGEIPESLGMLPSLSVLLLNQNSLEGKIPESL-RNCS 687

Query:   458 RMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNA 517
              +  + L  N   G LP+ +  L+ L +L L  N+ +G IP+ + N+  +  ++  +GN 
Sbjct:   688 GLTNIDLGGNKLTGKLPSWVGKLSSLFMLRLQSNSFTGQIPDDLCNVPNLRILD-LSGNK 746

Query:   518 IEYSFPL---NST-IGPGTVTE--QELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPM 571
             I    P    N T I  GT  E  Q LV     A +Y  I N + +   S N  SG +P 
Sbjct:   747 ISGPIPKCISNLTAIARGTNNEVFQNLVFIVTRAREYEAIANSINL---SGNNISGEIPR 803

Query:   572 GLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLN 631
              +  L  ++ LNLS N   G IPE I  +  LE++D S NKF+G IPQS ++++ L  LN
Sbjct:   804 EILGLLYLRILNLSRNSMAGSIPEKISELSRLETLDLSKNKFSGAIPQSFAAISSLQRLN 863

Query:   632 LSNNYLTGKIPSSTQLQSFNASCFLGNNL-CGAPLPKNC 669
             LS N L G IP   + Q  + S ++GN L CG PLPK C
Sbjct:   864 LSFNKLEGSIPKLLKFQ--DPSIYIGNELLCGKPLPKKC 900

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0005618 "cell wall" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP;IMP

TAIR|locus:2137296 RLP46 "receptor like protein 46" [Arabidopsis thaliana (taxid:3702)]

 Score = 712 (255.7 bits), Expect = 2.6e-70, P = 2.6e-70
 Identities = 219/686 (31%), Positives = 332/686 (48%)

Query:     4 SLVELDLS--NCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
             SLV LD+S  N Q    P     N ++L +LD+  N+F+ S +P  +F L+ L  L+L  
Sbjct:   106 SLVGLDVSFNNIQ-GEIPGYAFVNLTSLISLDMCCNRFNGS-IPHELFSLTNLQRLDLSR 163

Query:    62 NNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMA 121
             N   G +   ++ L +L+ L L  N    ++P     L  L  L+L  N     IP S++
Sbjct:   164 NVIGGTLSGDIKELKNLQELILDENLIGGAIPSEIGSLVELLTLTLRQNMFNSSIPSSVS 223

Query:   122 RLCNLRRLYLGGAKLNQEISEILEIFSGCVXXXXXXXXXXXXXXXXXXTDQLGQFKNLDS 181
             RL  L+ + L    L+ +I + +    G +                  +  +   KNL++
Sbjct:   224 RLTKLKTIDLQNNFLSSKIPDDI----GNLVNLSTLSLSMNKLSGGIPSS-IHNLKNLET 278

Query:   182 LDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVF-LVGANKLTLKVKRDWIPPFQ 240
             L L NN            N L G +       L KL V  L G NKL         P F+
Sbjct:   279 LQLENN------------NGLSGEIPAAWLFGLQKLKVLRLEGNNKLQWNNNGYVFPQFK 326

Query:   241 LIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQI 300
             L  L LRSC +    P WL +Q  L +LDL  + + G FP  L  +  ++  + L  N++
Sbjct:   327 LTHLSLRSCGLEGNIPDWLKNQTALVYLDLSINRLEGRFPKWL--ADLKIRNITLSDNRL 384

Query:   301 HGELT-NLTKASQLSYLSLIANNFSGSLP--LISSNLTVLELSGNSLSGPIFHFLCYTIN 357
              G L  NL +   L YL L  NNFSG +P  +  S + VL LS N+ SG +      +I 
Sbjct:   385 TGSLPPNLFQRPSLYYLVLSRNNFSGQIPDTIGESQVMVLMLSENNFSGSVPK----SIT 440

Query:   358 ETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTXXXXXXXXXXXXXRK 417
             +   LK L L +N L G+ P  +     L  LD+S+N+F+G++P               +
Sbjct:   441 KIPFLKLLDLSKNRLSGEFPR-FRPESYLEWLDISSNEFSGDVPAYFGGSTSMLLMS--Q 497

Query:   418 NRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTEL 477
             N  SG  P   +N + L+ LD+ +N++ G + S   +  S + +L LR+N+  G +P  +
Sbjct:   498 NNFSGEFPQNFRNLSYLIRLDLHDNKISGTVASLISQLSSSVEVLSLRNNSLKGSIPEGI 557

Query:   478 CDLAFLQILDLADNNLSGTIPNCIHNLTAMA--------TVNPFTGNAIEYSFPLNSTIG 529
              +L  L++LDL++NNL G +P+ + NLT M         T+ P+  +  +    +   I 
Sbjct:   558 SNLTSLKVLDLSENNLDGYLPSSLGNLTCMIKSPEPSAMTIRPYFSSYTDIP-NIERLIE 616

Query:   530 PGTVTEQELVV----TKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLS 585
               +     LVV    +K V  D N    L  ++D SKN   G +P  L NLK+++ LNLS
Sbjct:   617 IESEDIFSLVVNWKNSKQVLFDRN--FYLYTLLDLSKNKLHGEIPTSLGNLKSLKVLNLS 674

Query:   586 YNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSST 645
              N F+G IP++ G +  +ES+D S N  TGEIP+++S L+ LN L+L NN L G+IP S 
Sbjct:   675 NNEFSGLIPQSFGDLEKVESLDLSHNNLTGEIPKTLSKLSELNTLDLRNNKLKGRIPESP 734

Query:   646 QLQSFNASCFLGNN--LCGAPLPKNC 669
             QL   N      NN  +CG  +   C
Sbjct:   735 QLDRLNNPNIYANNSGICGMQIQVPC 760

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2046357 RLP23 "receptor like protein 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 664 (238.8 bits), Expect = 3.2e-65, P = 3.2e-65
 Identities = 219/691 (31%), Positives = 324/691 (46%)

Query:     2 LPSLVELDLSNCQLH-HFPQLPVANFSTLTTLDLSHNQFDNSFVP-AWVFGLSRLHFLNL 59
             L  L +LDLS  +L   FP   V     L  LDLS+N F  +  P + +F L +L +LNL
Sbjct:   146 LTMLAQLDLSYNKLTGSFPL--VRGLRKLIVLDLSYNHFSGTLNPNSSLFELHQLRYLNL 203

Query:    60 GYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRS 119
              +NNF   +P    NL  L++L L  N FS  VP     LT L  L L  N L    P  
Sbjct:   204 AFNNFSSSLPSKFGNLHRLENLILSSNGFSGQVPSTISNLTRLTKLYLDQNKLTSSFPL- 262

Query:   120 MARLCNLRRLYLGGAKLNQEI-SEILEI-FSGCVXXXXXXXXXXXXXXXXXXTDQLGQFK 177
             +  L NL  L L   K    I S +L + F   +                  + +L +  
Sbjct:   263 VQNLTNLYELDLSYNKFFGVIPSSLLTLPFLAHLALRENNLAGSVEVSNSSTSSRL-EIM 321

Query:   178 NLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIH---------FANLTKL-SVFLVGANKL 227
              L S       I+ P  +   +N  H  LS ++         F++L  L S+ L G +  
Sbjct:   322 YLGSNHFEGQ-ILEP--ISKLINLKHLDLSFLNTSYPIDLKLFSSLKSLRSLDLSGNSIS 378

Query:   228 TLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSA 287
             +  +  D   P  L  L LR CD+ + FP  L + K+L ++D+ N+ + G  P  L  S 
Sbjct:   379 SASLSSDSYIPLTLEMLTLRHCDI-NEFPNILKTLKELVYIDISNNRMKGKIPEWLW-SL 436

Query:   288 SQLYLLDLGHNQI---HGELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNSL 344
               L  + LG+N      G    L  +S L  L L +NNF G+LP +  ++    ++ NS 
Sbjct:   437 PLLQSVTLGNNYFTGFQGSAEILVNSSVL-LLYLDSNNFEGALPDLPLSIKGFGVASNSF 495

Query:   345 SGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTXX 404
             +  I   +C   N +  L  + L  N   G +P C    +NL  + L NN   G++P   
Sbjct:   496 TSEIPLSIC---NRS-SLAAIDLSYNNFTGPIPPC---LRNLELVYLRNNNLEGSIPDAL 548

Query:   405 XXXXXXXXXXXRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLIL 464
                          NRL+G +P    NC+SL  L V  N +    P W  +    + +L L
Sbjct:   549 CDGASLRTLDVSHNRLTGKLPRSFVNCSSLKFLSVINNRIEDTFPFWL-KALPNLQVLTL 607

Query:   465 RSNNFDGPL-PTELCDLAF--LQILDLADNNLSGTIP-NCIHNLTAMA-TVNPFTGNAIE 519
             RSN F GP+ P     L F  L+I +++DN  +G++P N   N  A + T+N   G  + 
Sbjct:   608 RSNRFYGPISPPHQGPLGFPELRIFEISDNKFTGSLPPNYFVNWKASSRTMNQDGGLYMV 667

Query:   520 YSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAV 579
             Y   L    G G     +L   KG+  +  + L     IDFS N   G +P  +  LKA+
Sbjct:   668 YEEKLFDEGGYGYTDALDLQY-KGLHMEQAKALTSYAAIDFSGNRLEGQIPESIGLLKAL 726

Query:   580 QSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTG 639
              ++N+S N FTG IP ++  + +LES+D S N+ +G IP  + S++FL ++N+S+N LTG
Sbjct:   727 IAVNISNNAFTGHIPLSMANLENLESLDMSRNQLSGTIPNGLGSISFLAYINVSHNQLTG 786

Query:   640 KIPSSTQLQSFNASCFLGN-NLCGAPLPKNC 669
             +IP  TQ+   + S F GN  LCG PL ++C
Sbjct:   787 EIPQGTQITGQSKSSFEGNAGLCGLPLKESC 817

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2094603 RLP37 "receptor like protein 37" [Arabidopsis thaliana (taxid:3702)]

 Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
 Identities = 205/691 (29%), Positives = 318/691 (46%)

Query:     2 LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
             L  L  L+LS+C L       + N S LT LDLS NQ    F P  +  L++L +++L  
Sbjct:   111 LRHLRHLELSHCNLQGEIPSSIGNLSHLTYLDLSFNQLVGEF-PVSIGNLNQLEYIDLWV 169

Query:    62 NNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMA 121
             N   G IP    NLT L  L L  N F+         LT L  + LS N     I   ++
Sbjct:   170 NALGGNIPTSFANLTKLSELHLRQNQFTGG-DIVLSNLTSLSIVDLSSNYFNSTISADLS 228

Query:   122 RLCNLRRLYLGGAKLNQEISEILEIFSGCVXXXXXXXXXXXXXXXXXXTDQLGQFKNLDS 181
             +L NL R ++            L +    V                  T        L  
Sbjct:   229 QLHNLERFWVSENSFFGPFPSFLLMIPSLVDICLSENQFEGPINFGNTTSS----SKLTE 284

Query:   182 LDLSNNSIVG--PRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPF 239
             LD+S N++ G  P+ +   ++  H  LS  +F      S+     +KL            
Sbjct:   285 LDVSYNNLDGLIPKSISTLVSLEHLELSHNNFRGQVPSSI-----SKLV----------- 328

Query:   240 QLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQ 299
              L  L L   + G + P  ++   +L+ LDL ++   G  P+ + K  + L  LDL +N+
Sbjct:   329 NLDGLYLSHNNFGGQVPSSIFKLVNLEHLDLSHNDFGGRVPSSISKLVN-LSSLDLSYNK 387

Query:   300 IHGELTN-LTKASQLSYLSLIANNFSGSLPLISSNLTVLE----LSGNSLSGPIFHFLCY 354
               G +   + ++S+L  + L  N+F+    ++      LE    LS NSL GPI  ++C 
Sbjct:   388 FEGHVPQCIWRSSKLDSVDLSYNSFNSFGRILELGDESLERDWDLSSNSLQGPIPQWIC- 446

Query:   355 TINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTXXXXXXXXXXXX 414
               N      FL    N L G +P C  +  +   L+L NN  +G +P             
Sbjct:   447 --NFRF-FSFLDFSNNHLNGSIPQCLKNSTDFYMLNLRNNSLSGFMPDFCMDGSMLGSLD 503

Query:   415 XRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLP 474
                N L G +P    NC  +  L+V  N++    P W G     + +L+LRSN F GP+ 
Sbjct:   504 VSLNNLVGKLPESFINCEWMEYLNVRGNKIKDTFPVWLGS-LQYLTVLVLRSNTFYGPVY 562

Query:   475 TELCDLAF--LQILDLADNNLSGTIP-NCIHNLTAMATVNPFTGNAIEY----SFPLNST 527
                  L F  ++I+D+++NN  G++P +   N T M++V       ++Y    + P ++ 
Sbjct:   563 KASAYLGFPSMRIMDISNNNFVGSLPQDYFANWTEMSSVWQRPMLTLDYKRNIAIPGSNY 622

Query:   528 IGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYN 587
             +G     +   +V KGV  D+ +I    ++IDFS N FSG +P  +  L  +  LNLS N
Sbjct:   623 MGDDNHQDSIDLVYKGVDTDFEQIFGGFKVIDFSGNRFSGHIPRSIGLLSELLHLNLSGN 682

Query:   588 IFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSSTQL 647
              FTG IP ++ ++  LE++D S N  +GEIP+ +  L+FL+++N S+N+L G +P STQ 
Sbjct:   683 AFTGNIPPSLASITKLETLDLSRNNLSGEIPRGLGKLSFLSNINFSHNHLEGLVPQSTQF 742

Query:   648 QSFNASCFLGN-NLCGAPLPKNCTDENVSIP 677
              S N S F+GN  L G  L + C + +V IP
Sbjct:   743 GSQNCSSFMGNPRLYG--LDQICGETHVPIP 771

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2096349 RLP31 "receptor like protein 31" [Arabidopsis thaliana (taxid:3702)]

 Score = 645 (232.1 bits), Expect = 3.3e-63, P = 3.3e-63
 Identities = 208/683 (30%), Positives = 317/683 (46%)

Query:     2 LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
             L  L  L LSNC L+      + N   LT LDLS+N      VP  +  LSRL  L+L  
Sbjct:   107 LQHLHNLTLSNCSLYGDIPSSLGNLFRLTLLDLSYNYLVGQ-VPPSIGNLSRLTILDLWD 165

Query:    62 NNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMA 121
             N   G +P  + NLT L++L    N FS ++P  F  LT L  ++L  NS E  +P  M+
Sbjct:   166 NKLVGQLPASIGNLTQLEYLIFSHNKFSGNIPVTFSNLTKLLVVNLYNNSFESMLPLDMS 225

Query:   122 RLCNLRRLYLGGAKLNQEISEILEIFSGCVXXXXXXXXXXXXXXXXXXTDQLGQFKNLDS 181
                NL    +G    +  + + L  F+                      +       L  
Sbjct:   226 GFQNLDYFNVGENSFSGTLPKSL--FT-IPSLRWANLEGNMFKGPIEFRNMYSPSTRLQY 282

Query:   182 LDLSNNSIVGP--RVLQLYLNKLHGTLSEIHFANLT-KLSVFLVGANKLTLKVKRDWIPP 238
             L LS N   GP    L  YLN +   LS   F NLT     FL     L  +V  +    
Sbjct:   283 LFLSQNKFDGPIPDTLSQYLNLIELDLS---FNNLTGSFPTFLFTIPTLE-RVNLEGNHL 338

Query:   239 FQLIELGLRSCDVGSRFPLWLYSQKD-------LQFLDL------FNSGISGTFPNRLLK 285
                +E G  S     +F  +  ++ +        Q+L+L      FN+ I GT P  + K
Sbjct:   339 KGPVEFGNMSSSSSLKFLNFAQNEFNGSIPESVSQYLNLEELHLSFNNFI-GTIPRSISK 397

Query:   286 SASQLYLLDLGHNQIHGELTN-LTKASQLSYLSLIANNFSGSLP-LISSNLTVLELSGNS 343
              A   Y   L  N + GE+ + L + + ++  +   N+F  S   L  + +  L+LS NS
Sbjct:   398 LAKLEYFC-LEDNNMVGEVPSWLWRLTMVALSNNSFNSFGESSEGLDETQVQWLDLSSNS 456

Query:   344 LSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQ-NLMALDLSNNKFTGNLPT 402
               GP  H++C    +   L+ L +  N   G +P C  S+  +L  L L NN  +G LP 
Sbjct:   457 FQGPFPHWIC----KLRSLEILIMSDNRFNGSIPPCLSSFMVSLTDLILRNNSLSGPLPD 512

Query:   403 XXXXXXXXXXXXXRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLL 462
                           +N+L G +P  L +C ++  L+V  N++    PSW G   S  VL 
Sbjct:   513 IFVNATKLLSLDVSRNKLDGVLPKSLIHCKAMQLLNVRSNKIKDKFPSWLGSLPSLHVL- 571

Query:   463 ILRSNNFDGPLPTELCDLAF--LQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEY 520
             ILRSN F G L      + F  L+++D++ N+L GT+P+     ++   ++  TG   ++
Sbjct:   572 ILRSNEFYGTLYQPHASIGFQSLRVIDVSHNDLIGTLPSFY--FSSWREMSRLTGEDGDF 629

Query:   521 SF---PLNSTIGPGTV--TEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTN 575
                  P    +   T    +   +V KGV  ++  I    ++I+FS N FSG +P  +  
Sbjct:   630 RLSEAPYMGKVLNATAFFVDSMEIVNKGVETEFKRINEENKVINFSGNRFSGNIPESIGL 689

Query:   576 LKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNN 635
             LK ++ LNLS N FTG IP+++  +  LE++D S+N+ +G+IPQ + SL+F++ +N S N
Sbjct:   690 LKELRHLNLSSNAFTGNIPQSLANLMKLEALDLSLNQLSGQIPQGLGSLSFMSTMNFSYN 749

Query:   636 YLTGKIPSSTQLQSFNASCFLGN 658
             +L G +P STQ Q  N S F+ N
Sbjct:   750 FLEGPVPKSTQFQGQNCSAFMEN 772

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2825384 RLP12 "AT1G71400" [Arabidopsis thaliana (taxid:3702)]

 Score = 497 (180.0 bits), Expect = 4.8e-63, Sum P(2) = 4.8e-63
 Identities = 138/421 (32%), Positives = 205/421 (48%)

Query:   264 DLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNF 323
             +L+ LD+ ++  +G  P  + K  + L+L DL  N + GE+       +L+ + L  N+F
Sbjct:   376 NLEELDISHNNFTGAIPPTISKLVNLLHL-DLSKNNLEGEVPACLW--RLNTMVLSHNSF 432

Query:   324 SGSLPLISSNLTV--LELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWM 381
             S           +  L+L+ NS  GPI + +C    +   L FL L  N+  G +P C  
Sbjct:   433 SSFENTSQEEALIEELDLNSNSFQGPIPYMIC----KLSSLGFLDLSNNLFSGSIPSCIR 488

Query:   382 SYQ-NLMALDLSNNKFTGNLPTXXXXXXXXXXXXXRKNRLSGTIPILLKNCTSLVTLDVG 440
             ++  ++  L+L +N F+G LP                N+L G  P  L NC +L  ++V 
Sbjct:   489 NFSGSIKELNLGDNNFSGTLPDIFSKATELVSLDVSHNQLEGKFPKSLINCKALELVNVE 548

Query:   441 ENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAF--LQILDLADNNLSGTIP 498
              N++    PSW  E    + +L LRSN F GPL      + F  L+I+D++ NN SGT+P
Sbjct:   549 SNKIKDIFPSWL-ESLPSLHVLNLRSNKFYGPLYHRHASIGFQSLRIIDISHNNFSGTLP 607

Query:   499 NC-IHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRI 557
                  N   M T+   T    +Y              E E+V  KGV   +  I    R 
Sbjct:   608 PYYFSNWKDMTTL---TEEMDQYMTEF-WRYADSYYHEMEMV-NKGVDMSFERIRRDFRA 662

Query:   558 IDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEI 617
             IDFS N  +G +P  L  LK ++ LNLS N FT  IP  +  +  LE++D S NK +G+I
Sbjct:   663 IDFSGNKINGNIPESLGYLKELRVLNLSGNAFTSVIPRFLANLTKLETLDISRNKLSGQI 722

Query:   618 PQSMSSLTFLNHLNLSNNYLTGKIPSSTQLQSFNASCFLGN-NLCGAPLPKNCTDENVSI 676
             PQ +++L+FL+++N S+N L G +P  TQ Q    S FL N  L G  L   C D     
Sbjct:   723 PQDLAALSFLSYMNFSHNLLQGPVPRGTQFQRQKCSSFLDNPGLYG--LEDICRDTGALN 780

Query:   677 P 677
             P
Sbjct:   781 P 781

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2087253 RLP39 "AT3G24900" [Arabidopsis thaliana (taxid:3702)]

 Score = 630 (226.8 bits), Expect = 1.3e-61, P = 1.3e-61
 Identities = 206/676 (30%), Positives = 315/676 (46%)

Query:    23 VANFSTLTTLDLSHNQFDNSFVP-AWVFGLSRLHFLNLGYNNF-QGPIPEGLQNLTSLKH 80
             V N   LT LD+SHN F  +  P + +F L  L +L+LG NNF    +P    NL  L+ 
Sbjct:   167 VRNLRKLTILDVSHNHFSGTLNPNSSLFELHNLAYLDLGSNNFTSSSLPYEFGNLNKLEL 226

Query:    81 LGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEI 140
             L +  N F   VP     LT L  L L  N   G +P  +  L  L  L+L     +  I
Sbjct:   227 LDVSSNSFFGQVPPTISNLTQLTELYLPLNDFTGSLPL-VQNLTKLSILHLSDNHFSGTI 285

Query:   141 SEILEIFSGCVXXXXXXXXXXXXXXXXXXTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLN 200
                L  F+                        L     L++L+L  N   G ++++  ++
Sbjct:   286 PSSL--FTMPFLSYLDLGGNNLSGSIEVPNSSLSS--RLENLNLGENHFEG-KIIEP-IS 339

Query:   201 KLHGTLSEIH--FANLT-KLSVFLVGANK--LTLKVKRDWIP----------PFQLIELG 245
             KL   L E+H  F N +  +++ L  + K  L L +   WI           P  L  L 
Sbjct:   340 KLIN-LKELHLSFLNTSYPINLKLFSSLKYLLLLDLSGGWISQASLSLDSYIPSTLEALL 398

Query:   246 LRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRL--LKSASQLYLLDLGHNQIHGE 303
             L+ C++ S FP  L +  +L+F+ L  + ISG  P  L  L   S +++ +       G 
Sbjct:   399 LKHCNI-SVFPNILKTLPNLEFIALSTNKISGKIPEWLWSLPRLSSVFIEENLFTGFEGS 457

Query:   304 LTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLK 363
                L  +S +  L+L++NN  G+LP +  ++       N   G I   +C        L 
Sbjct:   458 SEILVNSS-VRILNLLSNNLEGALPHLPLSVNYFSARNNRYGGDIPLSIC----SRRSLV 512

Query:   364 FLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTXXXXXXXXXXXXXRKNRLSGT 423
             FL L  N   G +P C     N + L+L  N   G++P                NRL+G 
Sbjct:   513 FLDLSYNNFTGPIPPC---PSNFLILNLRKNNLEGSIPDTYYADAPLRSLDVGYNRLTGK 569

Query:   424 IPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPL-PTELCDLAF 482
             +P  L NC++L  L V  N +    P    +   ++ +LIL SNNF GPL P     L F
Sbjct:   570 LPRSLLNCSALQFLSVDHNGIKDTFPFSL-KALPKLQVLILHSNNFYGPLSPPNQGSLGF 628

Query:   483 --LQILDLADNNLSGTIP-NCIHNLTAMA-TVNPFTGNAIEYSFPLNSTIGPGTVTEQEL 538
               L+IL++A N  +G++P +   N  A + T+N   G  + Y+  +  T    ++   +L
Sbjct:   629 PELRILEIAGNKFTGSLPPDFFENWKASSLTMNEDQGLYMVYNKVVYGTYYFTSLEAIDL 688

Query:   539 VVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIG 598
                KG++ + N +L+    IDFS N   G +P  +  LKA+ +LNLS N FTG IP ++ 
Sbjct:   689 QY-KGLSMEQNRVLSSSATIDFSGNRLEGEIPESIGLLKALIALNLSNNAFTGHIPLSLA 747

Query:   599 TMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSSTQLQSFNASCFLGN 658
              ++ +ES+D S N+ +G IP  + +L+FL ++N+S+N L G+IP  TQ+     S F GN
Sbjct:   748 NLKKIESLDLSSNQLSGTIPNGIGTLSFLAYMNVSHNQLNGEIPQGTQITGQPKSSFEGN 807

Query:   659 -NLCGAPLPKNCTDEN 673
               LCG PL ++C   N
Sbjct:   808 AGLCGLPLQESCFGTN 823

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2086979 RLP42 "receptor like protein 42" [Arabidopsis thaliana (taxid:3702)]

 Score = 624 (224.7 bits), Expect = 7.3e-61, P = 7.3e-61
 Identities = 216/697 (30%), Positives = 317/697 (45%)

Query:     2 LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVP-AWVFGLSRLHFLNLG 60
             L  L  LDLS  +L       V N   L  LD+S+N F     P + +F L  L +LNL 
Sbjct:   146 LSMLSALDLSKNELTGSLSF-VRNLRKLRVLDVSYNHFSGILNPNSSLFELHHLIYLNLR 204

Query:    61 YNNF-QGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRS 119
             YNNF    +P    NL  L+ L +  N F   VP     LT L  L L  N   G +P  
Sbjct:   205 YNNFTSSSLPYEFGNLNKLEVLDVSSNSFFGQVPPTISNLTQLTELYLPLNDFTGSLPL- 263

Query:   120 MARLCNLRRLYLGGAKLNQEISEILEIFSGCVXXXXXXXXXXXXXXXXXXTDQLGQFKNL 179
             +  L  L  L+L G   +  I   L  F+  +                           L
Sbjct:   264 VQNLTKLSILHLFGNHFSGTIPSSL--FT--MPFLSSIYLNKNNLSGSIEVPNSSSSSRL 319

Query:   180 DSLDLSNN---SIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWI 236
             + L L  N    I+ P    + L +L   LS ++ ++   LS+F    + L L +  DWI
Sbjct:   320 EHLYLGKNHLGKILEPIAKLVNLKELD--LSFLNTSHPIDLSLFSSLKSLLLLDLSGDWI 377

Query:   237 P----------PFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRL--L 284
                        P  L  L L  CD+ S FP    +  +L+++ L N+ ISG FP  L  L
Sbjct:   378 SKASLTLDSYIPSTLEVLRLEHCDI-SEFPNVFKTLHNLEYIALSNNRISGKFPEWLWSL 436

Query:   285 KSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNSL 344
                S +++ D       G    L  +S +  LSL  N+  G+LP +  ++       N  
Sbjct:   437 PRLSSVFITDNLLTGFEGSSEVLVNSS-VQILSLDTNSLEGALPHLPLSINYFSAIDNRF 495

Query:   345 SGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTXX 404
              G I   +C   N +  L  L L  N   G++P C +S  NL+ L L  N   G++P   
Sbjct:   496 GGDIPLSIC---NRS-SLDVLDLSYNNFSGQIPPC-LS--NLLYLKLRKNNLEGSIPDKY 548

Query:   405 XXXXXXXXXXXRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLIL 464
                          NRL+G +P  L NC++L  L V  N +    P +  +   ++ +L+L
Sbjct:   549 YVDTPLRSFDVGYNRLTGKLPRSLINCSALQFLSVDHNGIKDTFPFYL-KALPKLQVLLL 607

Query:   465 RSNNFDGPL-PTELCDLAF--LQILDLADNNLSGTIP-NCIHNLTAMA-TVNPFTGNAIE 519
              SN F GPL P     L F  L+IL++A N L+G++P +   N  A + T+N   G  + 
Sbjct:   608 SSNEFYGPLSPPNQGPLGFPELRILEIAGNKLTGSLPPDFFVNWKASSHTMNEDLGLYMV 667

Query:   520 YSFPLNSTIGPGTVTEQELVVT--KGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLK 577
             YS  +    G   +T  E +    KG++ +   +L     ID S N   G +P  L  LK
Sbjct:   668 YSKVI---FGNYHLTYYETIDLRYKGLSMEQENVLTSSATIDLSGNRLEGEIPESLGLLK 724

Query:   578 AVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYL 637
             A+ +LNLS N FTG IP ++  ++ +ES+D S N+ +G IP  + +L+FL ++N+S+N L
Sbjct:   725 ALIALNLSNNAFTGHIPLSLANLKKIESLDLSSNQLSGTIPNGLGTLSFLAYMNVSHNQL 784

Query:   638 TGKIPSSTQLQSFNASCFLGN-NLCGAPLPKNCTDEN 673
              G+IP  TQ+     S F GN  LCG PL ++C   N
Sbjct:   785 NGEIPQGTQITGQPKSSFEGNAGLCGFPLQESCFGTN 821

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2170483 FLS2 "FLAGELLIN-SENSITIVE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 630 (226.8 bits), Expect = 1.2e-60, P = 1.2e-60
 Identities = 207/690 (30%), Positives = 319/690 (46%)

Query:     5 LVELDLSNCQLHHFP-QLP--VANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
             L EL+     L++F   +P  +     +  LDL +N      VP  +   S L  +   Y
Sbjct:   119 LTELNQLILYLNYFSGSIPSGIWELKNIFYLDLRNNLLSGD-VPEEICKTSSLVLIGFDY 177

Query:    62 NNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMA 121
             NN  G IPE L +L  L+      NH + S+P     L +L  L LS N L G+IPR   
Sbjct:   178 NNLTGKIPECLGDLVHLQMFVAAGNHLTGSIPVSIGTLANLTDLDLSGNQLTGKIPRDFG 237

Query:   122 RLCNLRRLYLGGAKLNQEISEILEIFSGCVXXXXXXXXXXXXXXXXXXTDQLGQFKNLDS 181
              L NL+ L L    L  +I    EI   C                     +LG    L +
Sbjct:   238 NLLNLQSLVLTENLLEGDIPA--EI-GNC--SSLVQLELYDNQLTGKIPAELGNLVQLQA 292

Query:   182 LDLSNNSIVGPRVLQLY-LNKL-HGTLSEIHFAN--------LTKLSVFLVGANKLTLKV 231
             L +  N +       L+ L +L H  LSE H           L  L V  + +N  T + 
Sbjct:   293 LRIYKNKLTSSIPSSLFRLTQLTHLGLSENHLVGPISEEIGFLESLEVLTLHSNNFTGEF 352

Query:   232 KRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLY 291
              +       L  L +   ++    P  L    +L+ L   ++ ++G  P+ +  + + L 
Sbjct:   353 PQSITNLRNLTVLTVGFNNISGELPADLGLLTNLRNLSAHDNLLTGPIPSSI-SNCTGLK 411

Query:   292 LLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLP--LIS-SNLTVLELSGNSLSGPI 348
             LLDL HNQ+ GE+        L+++S+  N+F+G +P  + + SNL  L ++ N+L+G +
Sbjct:   412 LLDLSHNQMTGEIPRGFGRMNLTFISIGRNHFTGEIPDDIFNCSNLETLSVADNNLTGTL 471

Query:   349 FHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTXXXXXX 408
                    I +  KL+ L +  N L G +P    + ++L  L L +N FTG +P       
Sbjct:   472 KPL----IGKLQKLRILQVSYNSLTGPIPREIGNLKDLNILYLHSNGFTGRIPREMSNLT 527

Query:   409 XXXXXXXRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNN 468
                      N L G IP  + +   L  LD+  N+  G IP+ F  +   +  L L+ N 
Sbjct:   528 LLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPALFS-KLESLTYLSLQGNK 586

Query:   469 FDGPLPTELCDLAFLQILDLADNNLSGTIPN-CIHNLTAMATVNPFTGNAIEYSFPLNST 527
             F+G +P  L  L+ L   D++DN L+GTIP   + +L  M     F+ N +  + P    
Sbjct:   587 FNGSIPASLKSLSLLNTFDISDNLLTGTIPGELLASLKNMQLYLNFSNNLLTGTIP--KE 644

Query:   528 IGP-GTVTEQEL---VVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGL-TNLKAVQSL 582
             +G    V E +L   + +  +        N V  +DFS+N  SG +P  +   +  + SL
Sbjct:   645 LGKLEMVQEIDLSNNLFSGSIPRSLQACKN-VFTLDFSQNNLSGHIPDEVFQGMDMIISL 703

Query:   583 NLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIP 642
             NLS N F+G IP++ G M  L S+D S N  TGEIP+S+++L+ L HL L++N L G +P
Sbjct:   704 NLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPESLANLSTLKHLKLASNNLKGHVP 763

Query:   643 SSTQLQSFNASCFLGN-NLCGAPLP-KNCT 670
              S   ++ NAS  +GN +LCG+  P K CT
Sbjct:   764 ESGVFKNINASDLMGNTDLCGSKKPLKPCT 793

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS;IDA

GO:0016045 "detection of bacterium" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0052544 "defense response by callose deposition in cell wall" evidence=IMP

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0016310 "phosphorylation" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0006898 "receptor-mediated endocytosis" evidence=IDA

TAIR|locus:2205005 RLP7 "AT1G47890" [Arabidopsis thaliana (taxid:3702)]

 Score = 624 (224.7 bits), Expect = 2.9e-60, P = 2.9e-60
 Identities = 204/699 (29%), Positives = 321/699 (45%)

Query:     1 MLPSLVELDLSNCQLHHFPQLPVANFS-TLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNL 59
             ++P+L  +DL N   +    LPV + + +L  L + +  F  + +P  +  L  L  L L
Sbjct:   273 LIPNLQSIDLGN-NPNLRGNLPVFHENNSLLKLTILYTSFSGA-IPDSISSLKNLTSLTL 330

Query:    60 GYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRS 119
               + F G IP  L NL+ L HL L  N+    +P     L  L +  +  N L G +P +
Sbjct:   331 SVSYFSGKIPFSLGNLSHLSHLSLSSNNLIGEIPSSIGNLNQLTNFYVGGNKLSGNLPAT 390

Query:   120 MARLCNLRRLYLGG----AKLNQEISEI--LEIFSGCVXXXXXXXXXXXXXXXXXXTDQL 173
             ++ L  L  + L        L   IS++  L+ F                         L
Sbjct:   391 LSNLTKLNTISLSSNQFTGSLPPSISQLSKLKFFFADDNPFIGAILSPLLKIPSLTRIHL 450

Query:   174 GQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGT----LSEIHFANLTKLSVFLVGANKL-T 228
               +  L+ L    N  + P +   Y+   + T    L    F++L +L    +    + T
Sbjct:   451 S-YNQLNDLVGIENIFMLPNLETFYIYHYNYTKVRPLDLNVFSSLKQLGTLYISRIPIST 509

Query:   229 LKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSAS 288
               +  D+  P  L  L LRSC++ + FP ++   ++LQ LDL N+ I G  P+ L +  +
Sbjct:   510 TNITSDF--PSNLEYLSLRSCNI-TDFPEFIRKGRNLQILDLSNNKIKGQVPDWLWRMPT 566

Query:   289 QLYLLDLGHNQIHGELTNLTKA--SQLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSG 346
              L  +DL +N + G   ++  +  SQL+ + L +N F G L L S +L     S N+ +G
Sbjct:   567 -LNSVDLSNNSLSGFHVSVKASPESQLTSVDLSSNAFQGPLFLPSKSLRYFSGSNNNFTG 625

Query:   347 PIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMA-LDLSNNKFTGNLPTXXX 405
              I   +C        L+ L L  N L G LP C  +  + ++ LDL NN  +G+LP    
Sbjct:   626 KIPRSIC----GLSSLEILDLSNNNLNGSLPWCLETLMSSLSDLDLRNNSLSGSLPEIFM 681

Query:   406 XXXXXXXXXXRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILR 465
                         NR+ G +P  L  C+SL  L+VG N +    P        ++ +L+L 
Sbjct:   682 NATKLRSLDVSHNRMEGKLPGSLTGCSSLEVLNVGSNRINDMFPFELNS-LQKLQVLVLH 740

Query:   466 SNNFDGPLPT-ELCDLAF--LQILDLADNNLSGTIPN-CIHNLTAMATVNPFTGNAIEYS 521
             SN F G L   +     F  LQI+D++ N+  G +P+    N TAM++      N IE  
Sbjct:   741 SNKFHGTLHNVDGVWFGFPQLQIIDVSHNDFFGILPSDYFMNWTAMSSKKD---NNIEPE 797

Query:   522 FPLNSTI-GPGTVTEQELVV-TKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAV 579
             +  N ++ G        LV+ +KGV+ +   +L +   ID S N   G +P  +  LK +
Sbjct:   798 YIQNPSVYGSSLGYYTSLVLMSKGVSMEMERVLTIYTAIDLSGNQLHGKIPDSIGLLKEL 857

Query:   580 QSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTG 639
             + LN+S N FTG IP ++  +++LES+D S N  +GEIP  + +L+ L  +N+S+N L G
Sbjct:   858 RILNMSSNGFTGHIPSSLANLKNLESLDISQNNISGEIPPELGTLSSLAWINVSHNQLVG 917

Query:   640 KIPSSTQLQSFNASCFLGN-NLCGAPLPKNCTDENVSIP 677
              IP  TQ Q    S + GN  L G  L   C     S P
Sbjct:   918 SIPQGTQFQRQKCSSYEGNPGLNGPSLENVCGHIKESTP 956

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00031679 hypothetical protein (1024 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	695
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-55
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-51
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-34
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-22
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-16
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	3e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	7e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	6e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	7e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  202 bits (515), Expect = 7e-55
 Identities = 187/646 (28%), Positives = 292/646 (45%), Gaps = 111/646 (17%)

Query: 25  NFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLT-SLKHLGL 83
           N S + ++DLS          A +F L  +  +NL  N   GPIP+ +   + SL++L L
Sbjct: 67  NSSRVVSIDLSGKNISGKISSA-IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNL 125

Query: 84  PFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEI 143
             N+F+ S+P+    + +LE L LS N L G IP  +    +L+ L LGG  L  +I   
Sbjct: 126 SNNNFTGSIPRGS--IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS 183

Query: 144 LEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLH 203
           L   +      LE L LAS+ + G +  +LGQ K+L  + L  N++ G    ++      
Sbjct: 184 LTNLT-----SLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEI------ 232

Query: 204 GTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQK 263
           G L+ ++  +L          N LT                           P  L + K
Sbjct: 233 GGLTSLNHLDLV--------YNNLT------------------------GPIPSSLGNLK 260

Query: 264 DLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQ-LSYLSLIANN 322
           +LQ+L L+ + +SG  P  +  S  +L  LDL  N + GE+  L    Q L  L L +NN
Sbjct: 261 NLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNN 319

Query: 323 FSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMS 382
           F+G +P+  ++L                          +L+ L L  N   G++P     
Sbjct: 320 FTGKIPVALTSLP-------------------------RLQVLQLWSNKFSGEIPKNLGK 354

Query: 383 YQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGEN 442
           + NL  LDLS N  TG +P  L S  +L  L L  N L G IP  L  C SL  + + +N
Sbjct: 355 HNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDN 414

Query: 443 EVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNC-- 500
              G +PS F  +   +  L + +NN  G + +   D+  LQ+L LA N   G +P+   
Sbjct: 415 SFSGELPSEF-TKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG 473

Query: 501 ---IHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRI 557
              + NL    + N F+G A+                              +E++ L   
Sbjct: 474 SKRLENLD--LSRNQFSG-AVPRKL-----------------------GSLSELMQL--- 504

Query: 558 IDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEI 617
              S+N  SG +P  L++ K + SL+LS+N  +G+IP +   M  L  +D S N+ +GEI
Sbjct: 505 -KLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEI 563

Query: 618 PQSMSSLTFLNHLNLSNNYLTGKIPSSTQLQSFNASCFLGNN-LCG 662
           P+++ ++  L  +N+S+N+L G +PS+    + NAS   GN  LCG
Sbjct: 564 PKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCG 609

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  192 bits (489), Expect = 2e-51
 Identities = 163/501 (32%), Positives = 243/501 (48%), Gaps = 55/501 (10%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
           +P+L  LDLSN  L       + +FS+L  LDL  N      +P  +  L+ L FL L  
Sbjct: 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGN-VLVGKIPNSLTNLTSLEFLTLAS 197

Query: 62  NNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMA 121
           N   G IP  L  + SLK + L +N+ S  +P     LT L HL L YN+L G IP S+ 
Sbjct: 198 NQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG 257

Query: 122 RLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDS 181
            L NL+ L+L   KL+  I     IFS      L SL L+ +S+SG + + + Q +NL+ 
Sbjct: 258 NLKNLQYLFLYQNKLSGPIPP--SIFS---LQKLISLDLSDNSLSGEIPELVIQLQNLE- 311

Query: 182 LDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQL 241
                       +L L+ N   G +      +L +L V  + +NK + ++ ++       
Sbjct: 312 ------------ILHLFSNNFTGKIPV-ALTSLPRLQVLQLWSNKFSGEIPKN------- 351

Query: 242 IELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIH 301
                            L    +L  LDL  + ++G  P  L  S   L+ L L  N + 
Sbjct: 352 -----------------LGKHNNLTVLDLSTNNLTGEIPEGLCSSG-NLFKLILFSNSLE 393

Query: 302 GEL-TNLTKASQLSYLSLIANNFSGSLPLISSNLTV---LELSGNSLSGPIFHFLCYTIN 357
           GE+  +L     L  + L  N+FSG LP   + L +   L++S N+L G I         
Sbjct: 394 GEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKW---- 449

Query: 358 ETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRK 417
           +   L+ L L RN   G LPD + S + L  LDLS N+F+G +P  LGSLS L+ L L +
Sbjct: 450 DMPSLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSE 508

Query: 418 NRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTEL 477
           N+LSG IP  L +C  LV+LD+  N++ G IP+ F E    +  L L  N   G +P  L
Sbjct: 509 NKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSE-MPVLSQLDLSQNQLSGEIPKNL 567

Query: 478 CDLAFLQILDLADNNLSGTIP 498
            ++  L  ++++ N+L G++P
Sbjct: 568 GNVESLVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  140 bits (354), Expect = 2e-34
 Identities = 109/332 (32%), Positives = 170/332 (51%), Gaps = 24/332 (7%)

Query: 322 NFSGSLPLISSNLTVLELSGNSLSGPI----FHF-LCYTINETMKLKFLFLDRNILQGKL 376
            + G     SS +  ++LSG ++SG I    F      TIN         L  N L G +
Sbjct: 59  LWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTIN---------LSNNQLSGPI 109

Query: 377 P-DCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLV 435
           P D + +  +L  L+LSNN FTG++P   GS+ +L +L L  N LSG IP  + + +SL 
Sbjct: 110 PDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLK 167

Query: 436 TLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSG 495
            LD+G N + G IP+      + +  L L SN   G +P EL  +  L+ + L  NNLSG
Sbjct: 168 VLDLGGNVLVGKIPNSLT-NLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG 226

Query: 496 TIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADY-NEILNL 554
            IP  I  LT++  ++    N    + P+ S++G     +   +    ++      I +L
Sbjct: 227 EIPYEIGGLTSLNHLDLVYNN---LTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSL 283

Query: 555 VRII--DFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNK 612
            ++I  D S N  SG +P  +  L+ ++ L+L  N FTG+IP  + ++  L+ +    NK
Sbjct: 284 QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK 343

Query: 613 FTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSS 644
           F+GEIP+++     L  L+LS N LTG+IP  
Sbjct: 344 FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG 375

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  103 bits (257), Expect = 2e-22
 Identities = 67/213 (31%), Positives = 106/213 (49%), Gaps = 1/213 (0%)

Query: 456 FSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTG 515
            SR+V + L   N  G + + +  L ++Q ++L++N LSG IP+ I   ++       + 
Sbjct: 68  SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSN 127

Query: 516 NAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTN 575
           N    S P  S     T+     +++  +  D     +L +++D   N+  G +P  LTN
Sbjct: 128 NNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSL-KVLDLGGNVLVGKIPNSLTN 186

Query: 576 LKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNN 635
           L +++ L L+ N   G+IP  +G M+SL+ I    N  +GEIP  +  LT LNHL+L  N
Sbjct: 187 LTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYN 246

Query: 636 YLTGKIPSSTQLQSFNASCFLGNNLCGAPLPKN 668
            LTG IPSS          FL  N    P+P +
Sbjct: 247 NLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS 279

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 82.9 bits (205), Expect = 2e-16
 Identities = 44/109 (40%), Positives = 64/109 (58%), Gaps = 9/109 (8%)

Query: 567 GTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTF 626
           G +P  ++ L+ +QS+NLS N   G IP ++G++ SLE +D S N F G IP+S+  LT 
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 627 LNHLNLSNNYLTGKIPSST-----QLQSFNASCFLGN-NLCGAPLPKNC 669
           L  LNL+ N L+G++P++         SFN   F  N  LCG P  + C
Sbjct: 492 LRILNLNGNSLSGRVPAALGGRLLHRASFN---FTDNAGLCGIPGLRAC 537

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 72.5 bits (178), Expect = 4e-13
 Identities = 35/91 (38%), Positives = 53/91 (58%)

Query: 365 LFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTI 424
           L LD   L+G +P+     ++L +++LS N   GN+P SLGS++SL  L L  N  +G+I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 425 PILLKNCTSLVTLDVGENEVFGNIPSWFGER 455
           P  L   TSL  L++  N + G +P+  G R
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGR 513

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.4 bits (149), Expect = 9e-10
 Identities = 38/130 (29%), Positives = 52/130 (40%), Gaps = 25/130 (19%)

Query: 388 ALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGN 447
            L L N    G +P  +  L  L S++L  N + G IP  L + TSL  LD+  N   G+
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 448 IPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAM 507
           IP   G+                         L  L+IL+L  N+LSG +P  +      
Sbjct: 482 IPESLGQ-------------------------LTSLRILNLNGNSLSGRVPAALGGRLLH 516

Query: 508 ATVNPFTGNA 517
                FT NA
Sbjct: 517 RASFNFTDNA 526

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 60.6 bits (147), Expect = 2e-09
 Identities = 33/84 (39%), Positives = 51/84 (60%)

Query: 37  NQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWF 96
           NQ    F+P  +  L  L  +NL  N+ +G IP  L ++TSL+ L L +N F+ S+P+  
Sbjct: 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL 486

Query: 97  DRLTHLEHLSLSYNSLEGRIPRSM 120
            +LT L  L+L+ NSL GR+P ++
Sbjct: 487 GQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 56.0 bits (135), Expect = 5e-08
 Identities = 30/75 (40%), Positives = 44/75 (58%)

Query: 351 FLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSL 410
           F+   I++   L+ + L  N ++G +P    S  +L  LDLS N F G++P SLG L+SL
Sbjct: 433 FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSL 492

Query: 411 VSLHLRKNRLSGTIP 425
             L+L  N LSG +P
Sbjct: 493 RILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.8 bits (132), Expect = 1e-07
 Identities = 34/88 (38%), Positives = 44/88 (50%), Gaps = 7/88 (7%)

Query: 579 VQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLT 638
           +  L L      G IP  I  +R L+SI+ S N   G IP S+ S+T L  L+LS N   
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 639 GKIPSS----TQLQSFNASCFLGNNLCG 662
           G IP S    T L+  N +   GN+L G
Sbjct: 480 GSIPESLGQLTSLRILNLN---GNSLSG 504

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.4 bits (131), Expect = 1e-07
 Identities = 34/103 (33%), Positives = 49/103 (47%), Gaps = 6/103 (5%)

Query: 38  QFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFD 97
           QFD++    W      +  L L     +G IP  +  L  L+ + L  N    ++P    
Sbjct: 410 QFDST-KGKWF-----IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG 463

Query: 98  RLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEI 140
            +T LE L LSYNS  G IP S+ +L +LR L L G  L+  +
Sbjct: 464 SITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 50.2 bits (120), Expect = 4e-06
 Identities = 35/119 (29%), Positives = 52/119 (43%), Gaps = 1/119 (0%)

Query: 5   LVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNF 64
           L  LDLS  Q        + + S L  L LS N+     +P  +    +L  L+L +N  
Sbjct: 477 LENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGE-IPDELSSCKKLVSLDLSHNQL 535

Query: 65  QGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARL 123
            G IP     +  L  L L  N  S  +PK    +  L  +++S+N L G +P + A L
Sbjct: 536 SGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFL 594

Length = 968

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 46.9 bits (111), Expect = 2e-05
 Identities = 68/251 (27%), Positives = 106/251 (42%), Gaps = 17/251 (6%)

Query: 280 PNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLI--SSNLTVL 337
           P  +    S L  LDL  N+I    + L     L  L L  N+ S    L+   SNL  L
Sbjct: 132 PPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNL 191

Query: 338 ELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFT 397
           +LSGN +S      L   I     L+ L L  N +  +L     + +NL  L+LSNNK  
Sbjct: 192 DLSGNKISD-----LPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE 245

Query: 398 GNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFS 457
            +LP S+G+LS+L +L L  N++S      L + T+L  LD+  N +   +P        
Sbjct: 246 -DLPESIGNLSNLETLDLSNNQIS--SISSLGSLTNLRELDLSGNSLSNALPLIALLLLL 302

Query: 458 RMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNA 517
             +LL L        L  +L  +     +    +N   + P  +  L ++  +     NA
Sbjct: 303 LELLLNLLLTLK--ALELKLNSILLNNNI---LSNGETSSPEALSILESLNNLW-TLDNA 356

Query: 518 IEYSFPLNSTI 528
           ++ S      +
Sbjct: 357 LDESNLNRYIV 367

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.7 bits (111), Expect = 3e-05
 Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 10/105 (9%)

Query: 87  HFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEI 146
            F S+  KWF     ++ L L    L G IP  +++L +L+ + L G  +   I   L  
Sbjct: 410 QFDSTKGKWF-----IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSL-- 462

Query: 147 FSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLDLSNNSIVG 191
             G ++  LE L L+ +S +G + + LGQ  +L  L+L+ NS+ G
Sbjct: 463 --GSIT-SLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSG 504

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 36/135 (26%), Positives = 55/135 (40%), Gaps = 17/135 (12%)

Query: 69  PEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTH---LEHLSLSYNSLEGRIPRSMAR--- 122
            +GL     L+ L L  N          + L     L+ L L+ N L  R  R +A+   
Sbjct: 74  LQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLK 133

Query: 123 --LCNLRRLYLGGAKLNQEISE-ILEIFSGCVSNG-LESLALASSSISG----HLTDQLG 174
                L +L LG  +L     E + +      +N  L+ L LA++ I       L + L 
Sbjct: 134 DLPPALEKLVLGRNRLEGASCEALAKALR---ANRDLKELNLANNGIGDAGIRALAEGLK 190

Query: 175 QFKNLDSLDLSNNSI 189
              NL+ LDL+NN +
Sbjct: 191 ANCNLEVLDLNNNGL 205

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 45.3 bits (107), Expect = 7e-05
 Identities = 68/254 (26%), Positives = 108/254 (42%), Gaps = 12/254 (4%)

Query: 1   MLPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLG 60
            L  L  LDL+  +L       +   + LT+LDL +N       P      S L  L+L 
Sbjct: 91  NLLPLPSLDLNLNRLR-SNISELLELTNLTSLDLDNNN-ITDIPPLIGLLKSNLKELDLS 148

Query: 61  YNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSM 120
            N  +  +P  L+NL +LK+L L FN   S +PK    L++L +L LS N +   +P  +
Sbjct: 149 DNKIE-SLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEI 205

Query: 121 ARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLD 180
             L  L  L L    + + +S +  +        L  L L+++ +   L + +G   NL+
Sbjct: 206 ELLSALEELDLSNNSIIELLSSLSNL------KNLSGLELSNNKLED-LPESIGNLSNLE 258

Query: 181 SLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQ 240
           +LDLSNN I     L    N     LS    +N   L   L+   +L L +         
Sbjct: 259 TLDLSNNQISSISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALEL 318

Query: 241 LIELGLRSCDVGSR 254
            +   L + ++ S 
Sbjct: 319 KLNSILLNNNILSN 332

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 45.2 bits (107), Expect = 1e-04
 Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 24/117 (20%)

Query: 482 FLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVT 541
           F+  L L +  L G IPN I  L  + ++N  +GN+I  + P +     G++T  E    
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSIN-LSGNSIRGNIPPSL----GSITSLE---- 469

Query: 542 KGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIG 598
                          ++D S N F+G++P  L  L +++ LNL+ N  +GR+P  +G
Sbjct: 470 ---------------VLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.3 bits (90), Expect = 6e-04
 Identities = 20/60 (33%), Positives = 27/60 (45%)

Query: 53  RLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSL 112
            L  L+L  N          + L +LK L L  N+ +S  P+ F  L  L  L LS N+L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 42.3 bits (99), Expect = 7e-04
 Identities = 67/246 (27%), Positives = 104/246 (42%), Gaps = 17/246 (6%)

Query: 281 NRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNF---SGSLPLISSNLTVL 337
           +  L +   L  LDL  N++   ++ L + + L+ L L  NN       + L+ SNL  L
Sbjct: 86  SENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKEL 145

Query: 338 ELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFT 397
           +LS N +       L   +     LK L L  N L   LP    +  NL  LDLS NK +
Sbjct: 146 DLSDNKIE-----SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS 199

Query: 398 GNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFS 457
            +LP  +  LS+L  L L  N +   +   L N  +L  L++  N+   ++P   G   +
Sbjct: 200 -DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNK-LEDLPESIGNLSN 256

Query: 458 RMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCI--HNLTAMATVNPFTG 515
              L +  +        + L  L  L+ LDL+ N+LS  +P       L  +      T 
Sbjct: 257 LETLDLSNNQISS---ISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTL 313

Query: 516 NAIEYS 521
            A+E  
Sbjct: 314 KALELK 319

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.1 bits (87), Expect = 0.001
 Identities = 20/57 (35%), Positives = 28/57 (49%)

Query: 77  SLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGG 133
           +LK L L  N  +      F  L +L+ L LS N+L    P + + L +LR L L G
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSG 57

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.1 bits (87), Expect = 0.001
 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 29 LTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHF 88
          L +LDLS+N+           GL  L  L+L  NN     PE    L SL+ L L  N+ 
Sbjct: 2  LKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 40.6 bits (95), Expect = 0.003
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 1/71 (1%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
           L  L  ++LS   +       + + ++L  LDLS+N F+ S +P  +  L+ L  LNL  
Sbjct: 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILNLNG 499

Query: 62  NNFQGPIPEGL 72
           N+  G +P  L
Sbjct: 500 NSLSGRVPAAL 510

Length = 623

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	695
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.91
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.91
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.86
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.85
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.78
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.78
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.73
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.71
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.7
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.65
PLN03150	623	hypothetical protein; Provisional	99.33
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.3
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.26
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.25
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.23
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.18
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.16
PLN03150	623	hypothetical protein; Provisional	99.13
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.09
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.09
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.06
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.06
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.0
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.0
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.99
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.95
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.94
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.87
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.78
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.74
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.41
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.38
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.32
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.32
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.3
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.22
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.22
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.22
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.17
PRK15386	426	type III secretion protein GogB; Provisional	98.04
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.95
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.9
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.9
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.88
PRK15386	426	type III secretion protein GogB; Provisional	97.86
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.85
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.74
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.73
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.66
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.41
KOG4341	483	consensus F-box protein containing LRR [General fu	97.37
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.25
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.07
KOG4341	483	consensus F-box protein containing LRR [General fu	96.94
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.56
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.55
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.71
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.63
KOG4308	478	consensus LRR-containing protein [Function unknown	95.35
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.13
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.07
KOG0473	326	consensus Leucine-rich repeat protein [Function un	95.04
KOG4308	478	consensus LRR-containing protein [Function unknown	94.11
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.6
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.51
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.16
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.83
smart00370	26	LRR Leucine-rich repeats, outliers.	92.83
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	89.82
smart00370	26	LRR Leucine-rich repeats, outliers.	89.82
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	85.98
KOG3864	221	consensus Uncharacterized conserved protein [Funct	85.76
KOG3864	221	consensus Uncharacterized conserved protein [Funct	84.62

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1e-61  Score=566.83  Aligned_cols=540  Identities=32%  Similarity=0.493  Sum_probs=435.2

Q ss_pred             CCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccC-CCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEE
Q 036216           27 STLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGL-QNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHL  105 (695)
Q Consensus        27 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  105 (695)
                      .+++.|++++|.+++. .+..+..+++|++|+|++|++.+.+|..+ ..+++|++|++++|.+++.+|.  +.+++|++|
T Consensus        69 ~~v~~L~L~~~~i~~~-~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L  145 (968)
T PLN00113         69 SRVVSIDLSGKNISGK-ISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETL  145 (968)
T ss_pred             CcEEEEEecCCCcccc-CChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEE
Confidence            4677777777777765 56667777777777777777766566544 3777777777777777766653  456777777


Q ss_pred             EcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCcccccccchhcCCCCCCCEEEcc
Q 036216          106 SLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLDLS  185 (695)
Q Consensus       106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~  185 (695)
                      ++++|.+.+..|..++++++|++|++++|.+.+..|.    .++.+.+ |++|++++|.+.+..|..++.+++|++|+++
T Consensus       146 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~----~~~~l~~-L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~  220 (968)
T PLN00113        146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN----SLTNLTS-LEFLTLASNQLVGQIPRELGQMKSLKWIYLG  220 (968)
T ss_pred             ECcCCcccccCChHHhcCCCCCEEECccCcccccCCh----hhhhCcC-CCeeeccCCCCcCcCChHHcCcCCccEEECc
Confidence            7777777777777777777777777777777766666    4555555 7777777777777777777788888888888


Q ss_pred             CCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCCCCccEEEccCCCCCCCCCccccCCCCC
Q 036216          186 NNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKDL  265 (695)
Q Consensus       186 ~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L  265 (695)
                      +|.+.             +.+|. .+.++++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+.+|.++..+++|
T Consensus       221 ~n~l~-------------~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  286 (968)
T PLN00113        221 YNNLS-------------GEIPY-EIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKL  286 (968)
T ss_pred             CCccC-------------CcCCh-hHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCc
Confidence            77765             34444 57778888888888887777777777788888888888888877788888888888


Q ss_pred             CEEEcccCCCccccChHHhhcccccceeeccccccccccc-CccccCccceEecccccceeecCCCCCCCcEEEccCCcC
Q 036216          266 QFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELT-NLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNSL  344 (695)
Q Consensus       266 ~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l  344 (695)
                      ++|++++|.+.+.+|..+ ..+++|+.|++++|.+.+..+ .+..+++|+.|+++                     +|.+
T Consensus       287 ~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~---------------------~n~l  344 (968)
T PLN00113        287 ISLDLSDNSLSGEIPELV-IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLW---------------------SNKF  344 (968)
T ss_pred             CEEECcCCeeccCCChhH-cCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECc---------------------CCCC
Confidence            888888888877777654 567788888888887776554 34444444444444                     4444


Q ss_pred             CCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeC
Q 036216          345 SGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTI  424 (695)
Q Consensus       345 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  424 (695)
                      .+.+|..+    ..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|++++..
T Consensus       345 ~~~~p~~l----~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~  420 (968)
T PLN00113        345 SGEIPKNL----GKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL  420 (968)
T ss_pred             cCcCChHH----hCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeEC
Confidence            44333332    24677888888888888888888888889999999999998888888888999999999999999888


Q ss_pred             CccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCcccCChhhhhc
Q 036216          425 PILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNL  504 (695)
Q Consensus       425 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l  504 (695)
                      |..+..+++|+.|++++|.+.+.+|..+. .+++|+.|++++|++.+.+|..+ ..++|+.|++++|++++.+|..+..+
T Consensus       421 p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l  498 (968)
T PLN00113        421 PSEFTKLPLVYFLDISNNNLQGRINSRKW-DMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSL  498 (968)
T ss_pred             ChhHhcCCCCCEEECcCCcccCccChhhc-cCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhh
Confidence            88899999999999999999888887665 68999999999999988888765 46899999999999999999888877


Q ss_pred             ccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEec
Q 036216          505 TAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNL  584 (695)
Q Consensus       505 ~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  584 (695)
                      ++|                                                +.|++++|++.+.+|..+..+++|++|+|
T Consensus       499 ~~L------------------------------------------------~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  530 (968)
T PLN00113        499 SEL------------------------------------------------MQLKLSENKLSGEIPDELSSCKKLVSLDL  530 (968)
T ss_pred             hcc------------------------------------------------CEEECcCCcceeeCChHHcCccCCCEEEC
Confidence            766                                                78999999999999999999999999999


Q ss_pred             cCCcccccCCccccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEEcccCcCcccCCCCcccCccccccccCC-cccCC
Q 036216          585 SYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSSTQLQSFNASCFLGN-NLCGA  663 (695)
Q Consensus       585 s~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~iP~~~~~~~~~~~~~~~n-~l~~~  663 (695)
                      ++|.+++.+|..|+.+++|+.|+|++|++++.+|..+..+++|++|++++|+++|.+|+.+++.++....+.|| .+||+
T Consensus       531 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~  610 (968)
T PLN00113        531 SHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGG  610 (968)
T ss_pred             CCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999 89986


Q ss_pred             C
Q 036216          664 P  664 (695)
Q Consensus       664 ~  664 (695)
                      +
T Consensus       611 ~  611 (968)
T PLN00113        611 D  611 (968)
T ss_pred             c
Confidence            5

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.6e-56  Score=523.03  Aligned_cols=535  Identities=30%  Similarity=0.493  Sum_probs=470.3

Q ss_pred             CCCcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhc-CCCCCCEEEcCCCcCcccCCccCCCCCCCCEE
Q 036216            3 PSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHL   81 (695)
Q Consensus         3 ~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   81 (695)
                      .+++.|+++++.+++..+..|..+++|++|+|++|.+.+. +|..+. .+++|++|+|++|.+++.+|.  ..+++|++|
T Consensus        69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L  145 (968)
T PLN00113         69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETL  145 (968)
T ss_pred             CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEE
Confidence            4689999999999988888899999999999999999865 777665 999999999999999987775  568999999


Q ss_pred             eCCCCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEcc
Q 036216           82 GLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALA  161 (695)
Q Consensus        82 ~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~  161 (695)
                      ++++|.+++..|..++++++|++|++++|.+.+..|..++++++|++|++++|.+.+..|.    .++.+.. |+.|+++
T Consensus       146 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~----~l~~l~~-L~~L~L~  220 (968)
T PLN00113        146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPR----ELGQMKS-LKWIYLG  220 (968)
T ss_pred             ECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCCh----HHcCcCC-ccEEECc
Confidence            9999999999999999999999999999999989999999999999999999999988887    6677777 9999999


Q ss_pred             CcccccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCCCCc
Q 036216          162 SSSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQL  241 (695)
Q Consensus       162 ~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L  241 (695)
                      +|.+.+.+|..++++++|++|++++|.+.             +.+|. .+.++++|+.|++++|.+.+..+..+..+.+|
T Consensus       221 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-------------~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  286 (968)
T PLN00113        221 YNNLSGEIPYEIGGLTSLNHLDLVYNNLT-------------GPIPS-SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKL  286 (968)
T ss_pred             CCccCCcCChhHhcCCCCCEEECcCceec-------------cccCh-hHhCCCCCCEEECcCCeeeccCchhHhhccCc
Confidence            99999999999999999999999999875             34555 79999999999999999999888899999999


Q ss_pred             cEEEccCCCCCCCCCccccCCCCCCEEEcccCCCccccChHHhhcccccceeeccccccccccc-CccccCccceEeccc
Q 036216          242 IELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELT-NLTKASQLSYLSLIA  320 (695)
Q Consensus       242 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~L~~L~l~~  320 (695)
                      ++|++++|.+.+.+|.++..+++|+.|++++|.+.+.+|..+ ..+++|+.|++++|.+.+..+ .+..+++|+.|++++
T Consensus       287 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~  365 (968)
T PLN00113        287 ISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL-TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLST  365 (968)
T ss_pred             CEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhH-hcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCC
Confidence            999999999999999999999999999999999998877664 678999999999999987666 455556666666655


Q ss_pred             ccceeecCCCCCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeCCCCcccccC
Q 036216          321 NNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNL  400 (695)
Q Consensus       321 n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~  400 (695)
                      |.+.+..                     |..++    .+++|+.+++++|.+.+.+|..+..+++|+.|++++|.+++..
T Consensus       366 n~l~~~~---------------------p~~~~----~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~  420 (968)
T PLN00113        366 NNLTGEI---------------------PEGLC----SSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL  420 (968)
T ss_pred             CeeEeeC---------------------ChhHh----CcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeEC
Confidence            5555443                     33333    3567888888888888888888888899999999999998888


Q ss_pred             CccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCccccCC
Q 036216          401 PTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDL  480 (695)
Q Consensus       401 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l  480 (695)
                      |..+..++.|+.|++++|.+.+..+..+..+++|+.|++++|.+.+.+|..+  ..++|+.|++++|++.+..|..+..+
T Consensus       421 p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~--~~~~L~~L~ls~n~l~~~~~~~~~~l  498 (968)
T PLN00113        421 PSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF--GSKRLENLDLSRNQFSGAVPRKLGSL  498 (968)
T ss_pred             ChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc--ccccceEEECcCCccCCccChhhhhh
Confidence            8888889999999999999988888888889999999999999888888766  46899999999999999999999999


Q ss_pred             CCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEc
Q 036216          481 AFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDF  560 (695)
Q Consensus       481 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~L  560 (695)
                      ++|+.|++++|++.+.+|..+..+++|                                                ++|++
T Consensus       499 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L------------------------------------------------~~L~L  530 (968)
T PLN00113        499 SELMQLKLSENKLSGEIPDELSSCKKL------------------------------------------------VSLDL  530 (968)
T ss_pred             hccCEEECcCCcceeeCChHHcCccCC------------------------------------------------CEEEC
Confidence            999999999999999999888877766                                                78899


Q ss_pred             CCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEEcccCc
Q 036216          561 SKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNY  636 (695)
Q Consensus       561 s~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~  636 (695)
                      ++|.+++.+|..+..+++|++|+|++|++++.+|..+..+++|+.|++++|++.+.+|.. .....+....+.+|+
T Consensus       531 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~  605 (968)
T PLN00113        531 SHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNI  605 (968)
T ss_pred             CCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc-chhcccChhhhcCCc
Confidence            999999999999999999999999999999999999999999999999999999999965 334455566677776

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=2e-38  Score=312.65  Aligned_cols=388  Identities=23%  Similarity=0.256  Sum_probs=274.7

Q ss_pred             cEEEcCCCcCCCCCccCCCCC--CCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeC
Q 036216            6 VELDLSNCQLHHFPQLPVANF--STLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGL   83 (695)
Q Consensus         6 ~~L~ls~~~l~~~~~~~~~~l--~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L   83 (695)
                      +.||++++.+..+.+..+..+  ..-++||+++|++.++ .+.+|.++++|+.+++.+|.++ .+|.......+|+.|+|
T Consensus        55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~i-d~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L  132 (873)
T KOG4194|consen   55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHI-DFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDL  132 (873)
T ss_pred             eeeecCccccccccccccCCcCccceeeeeccccccccC-cHHHHhcCCcceeeeeccchhh-hcccccccccceeEEee
Confidence            457888888888766554443  3456699999999887 7777888999999999999888 67766666777999999


Q ss_pred             CCCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCc
Q 036216           84 PFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASS  163 (695)
Q Consensus        84 ~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n  163 (695)
                      .+|.|+++-.+.+..++.|+.||||.|.|+.+-..+|..-.++++|+|++|+|+.....    .+..+.+ |..|.|++|
T Consensus       133 ~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~----~F~~lns-L~tlkLsrN  207 (873)
T KOG4194|consen  133 RHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETG----HFDSLNS-LLTLKLSRN  207 (873)
T ss_pred             eccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccc----cccccch-heeeecccC
Confidence            99998888888888888999999999988865556777778888888888888776555    4555554 888888888


Q ss_pred             ccccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCCCCccE
Q 036216          164 SISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIE  243 (695)
Q Consensus       164 ~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~  243 (695)
                      +++...+..|.++++|+.|+|..|+|.              .+....|.++++|+.|.+..|++.......|..+.++++
T Consensus       208 rittLp~r~Fk~L~~L~~LdLnrN~ir--------------ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~  273 (873)
T KOG4194|consen  208 RITTLPQRSFKRLPKLESLDLNRNRIR--------------IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEH  273 (873)
T ss_pred             cccccCHHHhhhcchhhhhhcccccee--------------eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccce
Confidence            888888888888888888888888874              343446788888888888888887777777777888888


Q ss_pred             EEccCCCCCCCCCccccCCCCCCEEEcccCCCccccChHHhhcccccceeeccccccccccc-CccccCccceEeccccc
Q 036216          244 LGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELT-NLTKASQLSYLSLIANN  322 (695)
Q Consensus       244 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~L~~L~l~~n~  322 (695)
                      |+|+.|++...-..|+..++.|+.|++++|.|. .+....+..+++|+.|+|+.|+++...+ .+..+..|++|.+++|.
T Consensus       274 l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~-rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns  352 (873)
T KOG4194|consen  274 LNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQ-RIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS  352 (873)
T ss_pred             eecccchhhhhhcccccccchhhhhccchhhhh-eeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccc
Confidence            888888777777777777777778888877776 3333333556777777777777765444 44445555555555554


Q ss_pred             ceeecCCCCCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCC---ccccCCCCCCEEeCCCCccccc
Q 036216          323 FSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLP---DCWMSYQNLMALDLSNNKFTGN  399 (695)
Q Consensus       323 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~---~~~~~~~~L~~L~ls~n~~~~~  399 (695)
                      +.                         ..-.++|..+++|++|+|++|.++..+-   ..|.++++|+.|++.+|++...
T Consensus       353 i~-------------------------~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I  407 (873)
T KOG4194|consen  353 ID-------------------------HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSI  407 (873)
T ss_pred             hH-------------------------HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeec
Confidence            43                         2223344445566666666665553332   2355566666666666666655


Q ss_pred             CCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCC
Q 036216          400 LPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGE  441 (695)
Q Consensus       400 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  441 (695)
                      ...+|.+++.|+.|+|.+|.|..+-|.+|..+ .|++|.+..
T Consensus       408 ~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS  448 (873)
T KOG4194|consen  408 PKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS  448 (873)
T ss_pred             chhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence            55566666666666666666666666666666 666665543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=3.7e-38  Score=310.87  Aligned_cols=389  Identities=24%  Similarity=0.268  Sum_probs=248.2

Q ss_pred             CEEEcCCCcCcccCCccCCCCC--CCCEEeCCCCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEcc
Q 036216           55 HFLNLGYNNFQGPIPEGLQNLT--SLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLG  132 (695)
Q Consensus        55 ~~L~Ls~n~i~~~~~~~~~~l~--~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  132 (695)
                      +.|+++++.+..+....+.+.-  .-+.|++++|++..+.+..|.++++|+.+++..|.++ .+|...+...+|+.|+| 
T Consensus        55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L-  132 (873)
T KOG4194|consen   55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDL-  132 (873)
T ss_pred             eeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEee-
Confidence            3455555555533333333322  2233555555555555555555555555555555555 44443333333444444 


Q ss_pred             CCcCccccchhhhhhhcccccccceEEccCcccccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhh
Q 036216          133 GAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFA  212 (695)
Q Consensus       133 ~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~  212 (695)
                                                  .+|.|...-.+++..++.|+.|||+.|.|+              .++...|.
T Consensus       133 ----------------------------~~N~I~sv~se~L~~l~alrslDLSrN~is--------------~i~~~sfp  170 (873)
T KOG4194|consen  133 ----------------------------RHNLISSVTSEELSALPALRSLDLSRNLIS--------------EIPKPSFP  170 (873)
T ss_pred             ----------------------------eccccccccHHHHHhHhhhhhhhhhhchhh--------------cccCCCCC
Confidence                                        444444444555666677777777777765              55555565


Q ss_pred             CCCCCCEEEcccccceeecCCCCCCCCCccEEEccCCCCCCCCCccccCCCCCCEEEcccCCCccccChHHhhcccccce
Q 036216          213 NLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYL  292 (695)
Q Consensus       213 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~  292 (695)
                      .-.+++.|++++|+|+....                        ..|..+.+|..|.+++|+++ ++|...|+.+++|+.
T Consensus       171 ~~~ni~~L~La~N~It~l~~------------------------~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~  225 (873)
T KOG4194|consen  171 AKVNIKKLNLASNRITTLET------------------------GHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLES  225 (873)
T ss_pred             CCCCceEEeecccccccccc------------------------ccccccchheeeecccCccc-ccCHHHhhhcchhhh
Confidence            55666666666666653322                        23455567777788888887 888888888888888


Q ss_pred             eecccccccccccCccccCccceEecccccceeecCCCCCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccc
Q 036216          293 LDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNIL  372 (695)
Q Consensus       293 L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l  372 (695)
                      |+|..|++...                                                -..+|+++++|+.|.+..|.+
T Consensus       226 LdLnrN~iriv------------------------------------------------e~ltFqgL~Sl~nlklqrN~I  257 (873)
T KOG4194|consen  226 LDLNRNRIRIV------------------------------------------------EGLTFQGLPSLQNLKLQRNDI  257 (873)
T ss_pred             hhccccceeee------------------------------------------------hhhhhcCchhhhhhhhhhcCc
Confidence            88888877621                                                011233455666666666666


Q ss_pred             cCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhh
Q 036216          373 QGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWF  452 (695)
Q Consensus       373 ~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~  452 (695)
                      ......+|..+.++++|+|+.|++...-.+++.+++.|+.|++++|.|..+-++++.-+++|+.|+|+.|.+...-+..+
T Consensus       258 ~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf  337 (873)
T KOG4194|consen  258 SKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSF  337 (873)
T ss_pred             ccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHH
Confidence            65555667777777777777777776666777777788888888887777777777777778888888877744334444


Q ss_pred             hhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCcccCChh---hhhcccCcccCCCCCCcccccCCCCCCCC
Q 036216          453 GERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNC---IHNLTAMATVNPFTGNAIEYSFPLNSTIG  529 (695)
Q Consensus       453 ~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~---~~~l~~L~~l~~~~~~~l~~~~~~~~~~~  529 (695)
                      . .+..|++|+|+.|++...-...|..+.+|++|||++|.+++.+.+.   |.++                         
T Consensus       338 ~-~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl-------------------------  391 (873)
T KOG4194|consen  338 R-VLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGL-------------------------  391 (873)
T ss_pred             H-HHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccc-------------------------
Confidence            3 5777777777777777655666777788888888888777655442   2222                         


Q ss_pred             CCccccceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECC
Q 036216          530 PGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFS  609 (695)
Q Consensus       530 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls  609 (695)
                                             +.|+.|++.+|++..+.-.+|.++.+|++|||.+|.|....|++|..+ .|+.|.+.
T Consensus       392 -----------------------~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n  447 (873)
T KOG4194|consen  392 -----------------------PSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN  447 (873)
T ss_pred             -----------------------hhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence                                   233667777777775555667777777777777777777777777777 67777664


Q ss_pred             C
Q 036216          610 V  610 (695)
Q Consensus       610 ~  610 (695)
                      .
T Consensus       448 S  448 (873)
T KOG4194|consen  448 S  448 (873)
T ss_pred             c
Confidence            3

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=1.6e-41  Score=320.24  Aligned_cols=265  Identities=25%  Similarity=0.335  Sum_probs=154.6

Q ss_pred             CCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEE
Q 036216           27 STLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLS  106 (695)
Q Consensus        27 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  106 (695)
                      ..++.+++++|.+..  +.+.+.++..|.+|++++|++. ..|.+++.+.+++.|++++|+++ .+|..++.+.+|+.|+
T Consensus        45 v~l~~lils~N~l~~--l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~  120 (565)
T KOG0472|consen   45 VDLQKLILSHNDLEV--LREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLD  120 (565)
T ss_pred             cchhhhhhccCchhh--ccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhh
Confidence            456667777777665  4455666777777777777766 56666777777777777777776 5666677777777777


Q ss_pred             cccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCcccccccchhcCCCCCCCEEEccC
Q 036216          107 LSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLDLSN  186 (695)
Q Consensus       107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~  186 (695)
                      .++|.+. .+|.+++.+..|..++..+|+++...+.     ++.+.. +..+++.+|++....|..+. ++.|++||...
T Consensus       121 ~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~slp~~-----~~~~~~-l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~  192 (565)
T KOG0472|consen  121 CSSNELK-ELPDSIGRLLDLEDLDATNNQISSLPED-----MVNLSK-LSKLDLEGNKLKALPENHIA-MKRLKHLDCNS  192 (565)
T ss_pred             cccccee-ecCchHHHHhhhhhhhccccccccCchH-----HHHHHH-HHHhhccccchhhCCHHHHH-HHHHHhcccch
Confidence            7777766 5666677777777777777766554433     222333 55666666666665555444 66777777766


Q ss_pred             CCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCCCCccEEEccCCCCCCCCCccccCCCCCC
Q 036216          187 NSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQ  266 (695)
Q Consensus       187 n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~  266 (695)
                      |.+.              .+|+ .++.+.+|+.|++..|++....  .|..+..|.++++..|.+.....+....++++.
T Consensus       193 N~L~--------------tlP~-~lg~l~~L~~LyL~~Nki~~lP--ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~  255 (565)
T KOG0472|consen  193 NLLE--------------TLPP-ELGGLESLELLYLRRNKIRFLP--EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLL  255 (565)
T ss_pred             hhhh--------------cCCh-hhcchhhhHHHHhhhcccccCC--CCCccHHHHHHHhcccHHHhhHHHHhcccccce
Confidence            6653              5665 5666666666666666665221  344444444444444443322112223445555


Q ss_pred             EEEcccCCCccccChHHhhcccccceeecccccccccccCccccCccceEecccccc
Q 036216          267 FLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNF  323 (695)
Q Consensus       267 ~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~  323 (695)
                      .||+.+|+++ ++|..+. .+.+|+.||+++|.+++.++.++.+ +|+.|.+.+|++
T Consensus       256 vLDLRdNklk-e~Pde~c-lLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPl  309 (565)
T KOG0472|consen  256 VLDLRDNKLK-EVPDEIC-LLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPL  309 (565)
T ss_pred             eeeccccccc-cCchHHH-HhhhhhhhcccCCccccCCcccccc-eeeehhhcCCch
Confidence            5555555554 5554442 2444555555555555555555554 455555555543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=2.6e-40  Score=312.11  Aligned_cols=133  Identities=27%  Similarity=0.390  Sum_probs=103.6

Q ss_pred             hcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCC
Q 036216           48 VFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLR  127 (695)
Q Consensus        48 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  127 (695)
                      ...-.-|+.|.+++|.++ .+-+.+.++..|.+|++.+|++. ..|.+++.+..++.|+.++|.+. .+|+.++.+.+|+
T Consensus        41 wW~qv~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~  117 (565)
T KOG0472|consen   41 WWEQVDLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLV  117 (565)
T ss_pred             hhhhcchhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhh
Confidence            345567899999999998 55667899999999999999999 77889999999999999999998 8999999999999


Q ss_pred             EEEccCCcCccccchhhhhhhcccccccceEEccCcccccccchhcCCCCCCCEEEccCCCcC
Q 036216          128 RLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLDLSNNSIV  190 (695)
Q Consensus       128 ~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~  190 (695)
                      +++.+.|.+....+.     ++.+.. ++.++..+|++.. .|+.+..+.++..+++.+|+++
T Consensus       118 ~l~~s~n~~~el~~~-----i~~~~~-l~dl~~~~N~i~s-lp~~~~~~~~l~~l~~~~n~l~  173 (565)
T KOG0472|consen  118 KLDCSSNELKELPDS-----IGRLLD-LEDLDATNNQISS-LPEDMVNLSKLSKLDLEGNKLK  173 (565)
T ss_pred             hhhccccceeecCch-----HHHHhh-hhhhhcccccccc-CchHHHHHHHHHHhhccccchh
Confidence            999999988765444     222333 5666666666655 3444555666666666666654

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-36  Score=316.32  Aligned_cols=480  Identities=26%  Similarity=0.352  Sum_probs=348.8

Q ss_pred             EEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCC
Q 036216            7 ELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFN   86 (695)
Q Consensus         7 ~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n   86 (695)
                      .+|.+.+.++.||...+.+ ..+..|+++.|.+... .-+++.+.-+|+.|++++|++. ..|..+..+.+|+.|.++.|
T Consensus         2 ~vd~s~~~l~~ip~~i~~~-~~~~~ln~~~N~~l~~-pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n   78 (1081)
T KOG0618|consen    2 HVDASDEQLELIPEQILNN-EALQILNLRRNSLLSR-PLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRN   78 (1081)
T ss_pred             CcccccccCcccchhhccH-HHHHhhhccccccccC-chHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchh
Confidence            4678888888888754443 4488888888887653 1234445556888888888887 67778888888888888888


Q ss_pred             CCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCcccc
Q 036216           87 HFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSIS  166 (695)
Q Consensus        87 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~  166 (695)
                      .+. ..|.+.+++.+|++|.|.+|.+. .+|.++..+.+|+.|+++.|.+..                            
T Consensus        79 ~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~~----------------------------  128 (1081)
T KOG0618|consen   79 YIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFGP----------------------------  128 (1081)
T ss_pred             hHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccCC----------------------------
Confidence            887 56777888888888888888877 678888888888888888877643                            


Q ss_pred             cccchhcCCCCCCCEEEccCC-CcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCCCCccEEE
Q 036216          167 GHLTDQLGQFKNLDSLDLSNN-SIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELG  245 (695)
Q Consensus       167 ~~~~~~l~~l~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  245 (695)
                        .|..+..+..+..++.++| ++.                   .++... .+.+                        +
T Consensus       129 --~Pl~i~~lt~~~~~~~s~N~~~~-------------------~lg~~~-ik~~------------------------~  162 (1081)
T KOG0618|consen  129 --IPLVIEVLTAEEELAASNNEKIQ-------------------RLGQTS-IKKL------------------------D  162 (1081)
T ss_pred             --CchhHHhhhHHHHHhhhcchhhh-------------------hhcccc-chhh------------------------h
Confidence              3344555666666666666 111                   111111 3333                        4


Q ss_pred             ccCCCCCCCCCccccCCCCCCEEEcccCCCccccChHHhhcccccceeecccccccccccCccccCccceEeccccccee
Q 036216          246 LRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSG  325 (695)
Q Consensus       246 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~  325 (695)
                      +..+.+.+.++..+..++.  .+++.+|.+. ...   ...+.+|+.+....|++....   ...++++.|+..+|.+..
T Consensus       163 l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~d---ls~~~~l~~l~c~rn~ls~l~---~~g~~l~~L~a~~n~l~~  233 (1081)
T KOG0618|consen  163 LRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VLD---LSNLANLEVLHCERNQLSELE---ISGPSLTALYADHNPLTT  233 (1081)
T ss_pred             hhhhhcccchhcchhhhhe--eeecccchhh-hhh---hhhccchhhhhhhhcccceEE---ecCcchheeeeccCccee
Confidence            4444444444444444444  5777777664 222   345677777777777765322   123678888888888875


Q ss_pred             ecCCC-CCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeCCCCcccccCCccc
Q 036216          326 SLPLI-SSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSL  404 (695)
Q Consensus       326 ~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~  404 (695)
                      ..+.. +.+|+.+++++|++++. |++..    .+.+|+.+...+|.++ .+|..+...++|+.|.+..|.+. .+|...
T Consensus       234 ~~~~p~p~nl~~~dis~n~l~~l-p~wi~----~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~l  306 (1081)
T KOG0618|consen  234 LDVHPVPLNLQYLDISHNNLSNL-PEWIG----ACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFL  306 (1081)
T ss_pred             eccccccccceeeecchhhhhcc-hHHHH----hcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcc
Confidence            54443 46899999999988753 35544    5899999999999996 77888888899999999999998 677777


Q ss_pred             cCCCCCcEEECcCCcceeeCCc-cccCCCC-CcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCC
Q 036216          405 GSLSSLVSLHLRKNRLSGTIPI-LLKNCTS-LVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAF  482 (695)
Q Consensus       405 ~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~-L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~  482 (695)
                      ..+..|++|+|..|++. .+|. .+..... |..|..+.|++ ...|..-....+.|+.|++.+|.++...-..+.+..+
T Consensus       307 e~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l-~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~h  384 (1081)
T KOG0618|consen  307 EGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKL-STLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKH  384 (1081)
T ss_pred             cccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccc-cccccccchhhHHHHHHHHhcCcccccchhhhccccc
Confidence            88999999999999998 4554 3333333 77788888877 5566544446788999999999999877677888999


Q ss_pred             CCEEeCCCCcCcccCCh-hhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcC
Q 036216          483 LQILDLADNNLSGTIPN-CIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFS  561 (695)
Q Consensus       483 L~~L~L~~n~l~~~~p~-~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls  561 (695)
                      |+.|+|++|++. .+|. .+.+++.|                                                +.|+||
T Consensus       385 LKVLhLsyNrL~-~fpas~~~kle~L------------------------------------------------eeL~LS  415 (1081)
T KOG0618|consen  385 LKVLHLSYNRLN-SFPASKLRKLEEL------------------------------------------------EELNLS  415 (1081)
T ss_pred             eeeeeecccccc-cCCHHHHhchHHh------------------------------------------------HHHhcc
Confidence            999999999998 5554 45555544                                                778899


Q ss_pred             CccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCccccc-CCcCCcCCCCCCEEEcccCc
Q 036216          562 KNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGE-IPQSMSSLTFLNHLNLSNNY  636 (695)
Q Consensus       562 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~ls~N~  636 (695)
                      +|+++ .+|..+..+..|++|...+|.+. ..| .+..+++|+.+|+|.|+++.. +|..... ++|++||+++|.
T Consensus       416 GNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  416 GNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT  487 (1081)
T ss_pred             cchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence            99998 78888899999999999999998 777 578899999999999988743 4444333 789999999996

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=2.9e-36  Score=313.42  Aligned_cols=484  Identities=26%  Similarity=0.341  Sum_probs=309.9

Q ss_pred             CcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCC
Q 036216            5 LVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLP   84 (695)
Q Consensus         5 L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~   84 (695)
                      +..|+++.|.+...|-+...+.-+|+.||+++|.+..  .|..+..+.+|+.|+++.|.|. ..|.+..++.+|++|.|.
T Consensus        23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~--fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~   99 (1081)
T KOG0618|consen   23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISS--FPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLK   99 (1081)
T ss_pred             HHhhhccccccccCchHHhhheeeeEEeecccccccc--CCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheec
Confidence            5678888888877776667777789999999999988  8999999999999999999999 778899999999999999


Q ss_pred             CCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCcc
Q 036216           85 FNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSS  164 (695)
Q Consensus        85 ~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~  164 (695)
                      +|.+. .+|..+..+++|++|+++.|.+. .+|..+..+..+..+..++|.-...        ++...  ++.+++..|.
T Consensus       100 ~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~--------lg~~~--ik~~~l~~n~  167 (1081)
T KOG0618|consen  100 NNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQR--------LGQTS--IKKLDLRLNV  167 (1081)
T ss_pred             cchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhh--------hcccc--chhhhhhhhh
Confidence            99988 78999999999999999999998 7899999999999999999933221        22222  8899999999


Q ss_pred             cccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCCCCccEE
Q 036216          165 ISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIEL  244 (695)
Q Consensus       165 ~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L  244 (695)
                      +.+.++..+..+..  .|||++|.+.                 ...+.++.+|+.+....|++....    ..-++++.|
T Consensus       168 l~~~~~~~i~~l~~--~ldLr~N~~~-----------------~~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L  224 (1081)
T KOG0618|consen  168 LGGSFLIDIYNLTH--QLDLRYNEME-----------------VLDLSNLANLEVLHCERNQLSELE----ISGPSLTAL  224 (1081)
T ss_pred             cccchhcchhhhhe--eeecccchhh-----------------hhhhhhccchhhhhhhhcccceEE----ecCcchhee
Confidence            99988888888777  7999999873                 225677888888888888765322    123466777


Q ss_pred             EccCCCCCCCCCccccCCCCCCEEEcccCCCccccChHHhhcccccceeecccccccccccCccccCccceEecccccce
Q 036216          245 GLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFS  324 (695)
Q Consensus       245 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~  324 (695)
                      +...|.+....+.  ..-.+|++++++++.+. .+|.| ...+.+|+.++..+|.++..+..+....+|+.|.+..|.+.
T Consensus       225 ~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~w-i~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~  300 (1081)
T KOG0618|consen  225 YADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEW-IGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELE  300 (1081)
T ss_pred             eeccCcceeeccc--cccccceeeecchhhhh-cchHH-HHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhh
Confidence            7777766633221  12246777777777776 66643 45577777777777777655555555555555555555444


Q ss_pred             eecCCCCCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCcc-ccCCC-CCCEEeCCCCcccccCCc
Q 036216          325 GSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDC-WMSYQ-NLMALDLSNNKFTGNLPT  402 (695)
Q Consensus       325 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~~-~L~~L~ls~n~~~~~~~~  402 (695)
                      ...|..                          .+...|+.|++..|++. ..|+. +.... +|..+..+.|++.. .|.
T Consensus       301 yip~~l--------------------------e~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~-lp~  352 (1081)
T KOG0618|consen  301 YIPPFL--------------------------EGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLST-LPS  352 (1081)
T ss_pred             hCCCcc--------------------------cccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccc-ccc
Confidence            222110                          11333444444444444 22221 11111 24444455554442 221


Q ss_pred             -cccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCccccCCC
Q 036216          403 -SLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLA  481 (695)
Q Consensus       403 -~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~  481 (695)
                       .=...+.|+.|++.+|.+++..-..+.+..+|+.|++++|.+ ..+|+..                        +.++.
T Consensus       353 ~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL-~~fpas~------------------------~~kle  407 (1081)
T KOG0618|consen  353 YEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRL-NSFPASK------------------------LRKLE  407 (1081)
T ss_pred             ccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccc-ccCCHHH------------------------HhchH
Confidence             111234455555555555544434444555555555555554 4444444                        44455


Q ss_pred             CCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcC
Q 036216          482 FLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFS  561 (695)
Q Consensus       482 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls  561 (695)
                      .|+.|++++|+++ .+|+++..+..|                                                ++|...
T Consensus       408 ~LeeL~LSGNkL~-~Lp~tva~~~~L------------------------------------------------~tL~ah  438 (1081)
T KOG0618|consen  408 ELEELNLSGNKLT-TLPDTVANLGRL------------------------------------------------HTLRAH  438 (1081)
T ss_pred             HhHHHhcccchhh-hhhHHHHhhhhh------------------------------------------------HHHhhc
Confidence            5555555555555 455555544444                                                233334


Q ss_pred             CccccccCCccccCCCCCCEEeccCCccccc-CCccccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEEcccC
Q 036216          562 KNLFSGTLPMGLTNLKAVQSLNLSYNIFTGR-IPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNN  635 (695)
Q Consensus       562 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N  635 (695)
                      +|++. ..| .+..++.|+.+|+|.|.++.. +|+.... +.|+.|||++|.-....-..|..+.++...++.-|
T Consensus       439 sN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  439 SNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             CCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence            44444 445 566666666666666666532 2222211 66777777777644344455555556665665555

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=4.9e-34  Score=283.74  Aligned_cols=271  Identities=25%  Similarity=0.360  Sum_probs=167.5

Q ss_pred             ccCCCCCCEEEcccCCCccccChHHhhcccccceeecccccccccccCccccCccceEecccccceeecCCCCCCCcEEE
Q 036216          259 LYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLE  338 (695)
Q Consensus       259 l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~  338 (695)
                      +..-+++-.|++++|+|. +||..+|.++..|-.|||++|++...+|....+..|+.|++++|++..             
T Consensus       122 LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~h-------------  187 (1255)
T KOG0444|consen  122 LEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNH-------------  187 (1255)
T ss_pred             hhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhH-------------
Confidence            344455556666666665 777777777777778888888777666666666656665555554431             


Q ss_pred             ccCCcCCCccchhhhhhhhhccccceeecccccc-cCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcC
Q 036216          339 LSGNSLSGPIFHFLCYTINETMKLKFLFLDRNIL-QGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRK  417 (695)
Q Consensus       339 l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~  417 (695)
                                  .-...+..+++|+.|++++.+- ...+|..+..+.+|..+|+|.|.+. .+|+.+..+++|+.|+|++
T Consensus       188 ------------fQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~  254 (1255)
T KOG0444|consen  188 ------------FQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSG  254 (1255)
T ss_pred             ------------HHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCc
Confidence                        1111122244555555555442 2345666667777777777777776 5666666677777777777


Q ss_pred             CcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCc-cc
Q 036216          418 NRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLS-GT  496 (695)
Q Consensus       418 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~-~~  496 (695)
                      |+|+. +......                         ..+|++|+++.|+++ .+|.+++.++.|+.|.+.+|+++ .-
T Consensus       255 N~ite-L~~~~~~-------------------------W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeG  307 (1255)
T KOG0444|consen  255 NKITE-LNMTEGE-------------------------WENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEG  307 (1255)
T ss_pred             Cceee-eeccHHH-------------------------Hhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccC
Confidence            77662 2222223                         344555555555555 56677777777777777777765 23


Q ss_pred             CChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCC
Q 036216          497 IPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNL  576 (695)
Q Consensus       497 ~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l  576 (695)
                      +|..++.+..|                                                +.+..++|.+. ..|++++.+
T Consensus       308 iPSGIGKL~~L------------------------------------------------evf~aanN~LE-lVPEglcRC  338 (1255)
T KOG0444|consen  308 IPSGIGKLIQL------------------------------------------------EVFHAANNKLE-LVPEGLCRC  338 (1255)
T ss_pred             Cccchhhhhhh------------------------------------------------HHHHhhccccc-cCchhhhhh
Confidence            55555555544                                                34445556555 778888888


Q ss_pred             CCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEEcc
Q 036216          577 KAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLS  633 (695)
Q Consensus       577 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls  633 (695)
                      ..|+.|.|++|++. .+|+++.-++.|+.||+..|.-....|.--..-++|+.-++.
T Consensus       339 ~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNID  394 (1255)
T KOG0444|consen  339 VKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNID  394 (1255)
T ss_pred             HHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecc
Confidence            88888888888887 778888888888888888886553333222222445544443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=8.5e-33  Score=274.96  Aligned_cols=359  Identities=29%  Similarity=0.411  Sum_probs=219.6

Q ss_pred             CCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCCCCCCCchhhhcCCCCCC
Q 036216           24 ANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLE  103 (695)
Q Consensus        24 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~  103 (695)
                      +-++-.|-+|+++|.+++..+|.....+++++.|.|...++. .+|+.++.+.+|++|.+++|++. .+...++.++.|+
T Consensus         4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LR   81 (1255)
T KOG0444|consen    4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLR   81 (1255)
T ss_pred             cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhH
Confidence            345677888999999987778988889999999999998888 78889999999999999999888 4556688888999


Q ss_pred             EEEcccCcCCc-ccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCcccccccchhcCCCCCCCEE
Q 036216          104 HLSLSYNSLEG-RIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSL  182 (695)
Q Consensus       104 ~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L  182 (695)
                      .+++.+|+++. -+|..+.++..|..|||+.|++..                              .|..+..-+++-.|
T Consensus        82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~E------------------------------vP~~LE~AKn~iVL  131 (1255)
T KOG0444|consen   82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLRE------------------------------VPTNLEYAKNSIVL  131 (1255)
T ss_pred             HHhhhccccccCCCCchhcccccceeeecchhhhhh------------------------------cchhhhhhcCcEEE
Confidence            99999888763 467788888888888888888754                              23344455556666


Q ss_pred             EccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCCCCccEEEccCCCCCCCCCccccCC
Q 036216          183 DLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQ  262 (695)
Q Consensus       183 ~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~  262 (695)
                      +||+|+|.              +||...|.+++.|-.|++++|++.                         .+|..+..+
T Consensus       132 NLS~N~Ie--------------tIPn~lfinLtDLLfLDLS~NrLe-------------------------~LPPQ~RRL  172 (1255)
T KOG0444|consen  132 NLSYNNIE--------------TIPNSLFINLTDLLFLDLSNNRLE-------------------------MLPPQIRRL  172 (1255)
T ss_pred             EcccCccc--------------cCCchHHHhhHhHhhhccccchhh-------------------------hcCHHHHHH
Confidence            66666664              566555555555555555555443                         223333333


Q ss_pred             CCCCEEEcccCCCccccChHHhhcccccceeecccccccccccCccccCccceEecccccceeecCCCCCCCcEEEccCC
Q 036216          263 KDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGN  342 (695)
Q Consensus       263 ~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n  342 (695)
                      ..|++|++++|.+. .+                       ....+..+++|+.|.+++.+-+-                 
T Consensus       173 ~~LqtL~Ls~NPL~-hf-----------------------QLrQLPsmtsL~vLhms~TqRTl-----------------  211 (1255)
T KOG0444|consen  173 SMLQTLKLSNNPLN-HF-----------------------QLRQLPSMTSLSVLHMSNTQRTL-----------------  211 (1255)
T ss_pred             hhhhhhhcCCChhh-HH-----------------------HHhcCccchhhhhhhcccccchh-----------------
Confidence            44444444444332 00                       01112222333333333221110                 


Q ss_pred             cCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCccee
Q 036216          343 SLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSG  422 (695)
Q Consensus       343 ~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~  422 (695)
                             ..++.++..+.+|..++++.|.+. ..|+++..+++|+.|++|+|+++. +........+|++|+++.|+++ 
T Consensus       212 -------~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-  281 (1255)
T KOG0444|consen  212 -------DNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-  281 (1255)
T ss_pred             -------hcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhc-
Confidence                   011112223555566666666655 556666666666666666666662 3333344456666666666666 


Q ss_pred             eCCccccCCCCCcEEEcCCCccc-ccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCcccCChhh
Q 036216          423 TIPILLKNCTSLVTLDVGENEVF-GNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCI  501 (695)
Q Consensus       423 ~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~  501 (695)
                      .+|.++++++.|+.|.+.+|++. .-+|+.++ .+..|+++..++|.+. .+|+.+|.|..|+.|.|++|++. .+|+.+
T Consensus       282 ~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIG-KL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaI  358 (1255)
T KOG0444|consen  282 VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIG-KLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAI  358 (1255)
T ss_pred             cchHHHhhhHHHHHHHhccCcccccCCccchh-hhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhh
Confidence            56666666666666666666543 33555555 4556666666666554 55666666666666666666655 555555


Q ss_pred             hhcccC
Q 036216          502 HNLTAM  507 (695)
Q Consensus       502 ~~l~~L  507 (695)
                      .-++.|
T Consensus       359 HlL~~l  364 (1255)
T KOG0444|consen  359 HLLPDL  364 (1255)
T ss_pred             hhcCCc
Confidence            544444

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.91  E-value=2.7e-26  Score=217.34  Aligned_cols=412  Identities=23%  Similarity=0.233  Sum_probs=242.2

Q ss_pred             cccccceEEccCcccccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEccc-cccee
Q 036216          151 VSNGLESLALASSSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGA-NKLTL  229 (695)
Q Consensus       151 ~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~-n~l~~  229 (695)
                      ++....+++|..|+|+.+.+.+|+.+++|+.|||++|.|+              .|.+.+|.+++.+..|.+.+ |+|+.
T Consensus        65 LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is--------------~I~p~AF~GL~~l~~Lvlyg~NkI~~  130 (498)
T KOG4237|consen   65 LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS--------------FIAPDAFKGLASLLSLVLYGNNKITD  130 (498)
T ss_pred             CCCcceEEEeccCCcccCChhhccchhhhceecccccchh--------------hcChHhhhhhHhhhHHHhhcCCchhh
Confidence            3444778888888888888888888888888888888886              77777888888887777666 88888


Q ss_pred             ecCCCCCCCCCccEEEccCCCCCCCCCccccCCCCCCEEEcccCCCccccChHHhhcccccceeeccccccccc------
Q 036216          230 KVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGE------  303 (695)
Q Consensus       230 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~------  303 (695)
                      .....|..+..++.|.+.-|.+.......|..++++..|.+.+|.+. .++...+..+..++.+.+..|.+...      
T Consensus       131 l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wl  209 (498)
T KOG4237|consen  131 LPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWL  209 (498)
T ss_pred             hhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchh
Confidence            88888888888888888888888777888888999999999999887 77777778888888888888764310      


Q ss_pred             -------ccCccccCccceEecccccceeecCCCC-CCCcEE---EccCCcCCCccchhhhhhhhhccccceeecccccc
Q 036216          304 -------LTNLTKASQLSYLSLIANNFSGSLPLIS-SNLTVL---ELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNIL  372 (695)
Q Consensus       304 -------~~~~~~~~~L~~L~l~~n~~~~~~~~~~-~~L~~L---~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l  372 (695)
                             ...+++.....-..+.+.++....+..+ .+++.+   -.+.+...+..|.   ..|.++++|++|++++|++
T Consensus       210 a~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~---~cf~~L~~L~~lnlsnN~i  286 (498)
T KOG4237|consen  210 ADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPA---KCFKKLPNLRKLNLSNNKI  286 (498)
T ss_pred             hhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChH---HHHhhcccceEeccCCCcc
Confidence                   0011111111122222222221111111 111111   1111212222221   2245566666666666666


Q ss_pred             cCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCC-hh
Q 036216          373 QGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIP-SW  451 (695)
Q Consensus       373 ~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~  451 (695)
                      +.+-+.+|.+...+++|.|..|++.......|.++..|++|+|++|+|+...|.+|..+.+|.+|.+-.|++.-.-- .|
T Consensus       287 ~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~w  366 (498)
T KOG4237|consen  287 TRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAW  366 (498)
T ss_pred             chhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHH
Confidence            66666666666666666666666655445556666666666666666666666666666666666665555421111 11


Q ss_pred             hhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCccc---CChhhhhcccCcccCCCCCCcccccCCCCCCC
Q 036216          452 FGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGT---IPNCIHNLTAMATVNPFTGNAIEYSFPLNSTI  528 (695)
Q Consensus       452 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~---~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~  528 (695)
                      +++        ++++....|..|-  .....++.+++++..+...   .|+...-.+                    ...
T Consensus       367 l~~--------Wlr~~~~~~~~~C--q~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~--------------------s~~  416 (498)
T KOG4237|consen  367 LGE--------WLRKKSVVGNPRC--QSPGFVRQIPISDVAFGDFRCGGPEELGCLT--------------------SSP  416 (498)
T ss_pred             HHH--------HHhhCCCCCCCCC--CCCchhccccchhccccccccCCccccCCCC--------------------CCC
Confidence            111        1112221221111  1223455666665544311   111110000                    000


Q ss_pred             CCCccccceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEEC
Q 036216          529 GPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDF  608 (695)
Q Consensus       529 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  608 (695)
                      .+..-+...                  ++...|+..+. .+|..+.  ..-++|++.+|.++ .+|+.  .+.+| .+|+
T Consensus       417 cP~~c~c~~------------------tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dl  471 (498)
T KOG4237|consen  417 CPPPCTCLD------------------TVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDL  471 (498)
T ss_pred             CCCCcchhh------------------hhHhhcccchh-hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hccc
Confidence            000000000                  22233444443 5554443  25667888888888 67775  66777 8888


Q ss_pred             CCCcccccCCcCCcCCCCCCEEEcccC
Q 036216          609 SVNKFTGEIPQSMSSLTFLNHLNLSNN  635 (695)
Q Consensus       609 s~n~l~~~~p~~l~~l~~L~~L~ls~N  635 (695)
                      ++|+++..--..|.++++|.+|-|+||
T Consensus       472 s~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  472 SNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             ccCceehhhcccccchhhhheeEEecC
Confidence            888888666677888888888888876

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.91  E-value=1.9e-26  Score=218.29  Aligned_cols=283  Identities=21%  Similarity=0.162  Sum_probs=187.8

Q ss_pred             CCcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCC-CcCcccCCccCCCCCCCCEEe
Q 036216            4 SLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY-NNFQGPIPEGLQNLTSLKHLG   82 (695)
Q Consensus         4 ~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~   82 (695)
                      ..+.++|..|.|+.||+.+|..+++||.||||+|.|+.+ -|++|.++.+|.+|-+.+ |+|+....+.|.++..|+.|.
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I-~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl  146 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFI-APDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL  146 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhc-ChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence            446788889999999999999999999999999999887 888898998887777665 888877778889999999999


Q ss_pred             CCCCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccch-hhhh-------hhcccccc
Q 036216           83 LPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISE-ILEI-------FSGCVSNG  154 (695)
Q Consensus        83 L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~-------~~~~~~~~  154 (695)
                      +.-|++..+..+.|..+++|..|.+.+|.+..+-...|..+..++++.+..|.+.....- +...       .++...- 
T Consensus       147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc-  225 (498)
T KOG4237|consen  147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC-  225 (498)
T ss_pred             cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee-
Confidence            999999888888899999999999999988855455888888888888888874321100 0000       0000000 


Q ss_pred             cceEEccCcccccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCC
Q 036216          155 LESLALASSSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRD  234 (695)
Q Consensus       155 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~  234 (695)
                      ..-..+.+.++....+..|...  ++.+          ..-....+...+.-|...|..+++|+.+++++|+++.+.+.+
T Consensus       226 ~~p~rl~~~Ri~q~~a~kf~c~--~esl----------~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~a  293 (498)
T KOG4237|consen  226 VSPYRLYYKRINQEDARKFLCS--LESL----------PSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGA  293 (498)
T ss_pred             cchHHHHHHHhcccchhhhhhh--HHhH----------HHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhh
Confidence            1111111111111111111111  1110          000001122234556667777777777777777777777777


Q ss_pred             CCCCCCccEEEccCCCCCCCCCccccCCCCCCEEEcccCCCccccChHHhhcccccceeeccccccc
Q 036216          235 WIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIH  301 (695)
Q Consensus       235 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~  301 (695)
                      |.....+++|+|..|.+...-...|..+..|+.|++++|+|+ .+...+|..+..|..|++-.|.+.
T Consensus       294 Fe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it-~~~~~aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  294 FEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQIT-TVAPGAFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             hcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeE-EEecccccccceeeeeehccCccc
Confidence            777777777777777766655566677777777777777776 555555666667777777666543

>PLN03210 Resistant to P

Probab=99.90  E-value=3.8e-22  Score=233.55  Aligned_cols=223  Identities=19%  Similarity=0.174  Sum_probs=103.4

Q ss_pred             CCEEEcccCCCccccChHHhhcccccceeecccccccccccCccccCccceEecccccceeecCCC--CCCCcEEEccCC
Q 036216          265 LQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLI--SSNLTVLELSGN  342 (695)
Q Consensus       265 L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~--~~~L~~L~l~~n  342 (695)
                      |+.|.+.++.+. .+|..+  ...+|+.|++.++.+...+.....+++|++|+++++...+.+|..  +++|+.|++++|
T Consensus       591 Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c  667 (1153)
T PLN03210        591 LRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDC  667 (1153)
T ss_pred             cEEEEecCCCCC-CCCCcC--CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCC
Confidence            444555444443 444433  234455555555544443334444445555555444333333321  234555555554


Q ss_pred             cCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCccee
Q 036216          343 SLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSG  422 (695)
Q Consensus       343 ~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~  422 (695)
                      .....+|..    +..+++|+.|++++|.....+|..+ ++++|+.|++++|...+.+|..   .++|++|++++|.+. 
T Consensus       668 ~~L~~lp~s----i~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-  738 (1153)
T PLN03210        668 SSLVELPSS----IQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-  738 (1153)
T ss_pred             CCccccchh----hhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-
Confidence            433333322    2235555555555554333444433 4555556666555544344432   245555556555554 


Q ss_pred             eCCccccCCCCCcEEEcCCCccc------ccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCccc
Q 036216          423 TIPILLKNCTSLVTLDVGENEVF------GNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGT  496 (695)
Q Consensus       423 ~~~~~~~~l~~L~~L~l~~n~~~------~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~  496 (695)
                      .+|..+ .+++|++|++.++...      ..++......+++|+.|++++|...+.+|.+++++++|+.|++++|...+.
T Consensus       739 ~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~  817 (1153)
T PLN03210        739 EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLET  817 (1153)
T ss_pred             cccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCe
Confidence            334332 3455555555443210      011111111234566666666655555566666666666666666544334


Q ss_pred             CChh
Q 036216          497 IPNC  500 (695)
Q Consensus       497 ~p~~  500 (695)
                      +|..
T Consensus       818 LP~~  821 (1153)
T PLN03210        818 LPTG  821 (1153)
T ss_pred             eCCC
Confidence            4443

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.89  E-value=9.4e-22  Score=230.24  Aligned_cols=161  Identities=19%  Similarity=0.219  Sum_probs=88.3

Q ss_pred             CCccCCCCCCCCCEEECCCCCCCC-----CCCchhhcCC-CCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCCCCCCC
Q 036216           18 FPQLPVANFSTLTTLDLSHNQFDN-----SFVPAWVFGL-SRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSS   91 (695)
Q Consensus        18 ~~~~~~~~l~~L~~L~Ls~n~i~~-----~~~~~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~   91 (695)
                      +...+|.++++|+.|.+..+....     ..+|..+..+ .+|+.|++.++.+. .+|..| ...+|++|++++|.+. .
T Consensus       549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~  625 (1153)
T PLN03210        549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-K  625 (1153)
T ss_pred             ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-c
Confidence            334566677777777665543210     1144444444 34677777666665 455555 3566777777776665 4


Q ss_pred             chhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCcccccccch
Q 036216           92 VPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTD  171 (695)
Q Consensus        92 ~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~  171 (695)
                      ++..+..+++|+.|+++++.....+| .++.+++|++|++++|.....+|.    .++.+.+ |+.|++++|...+.+|.
T Consensus       626 L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~----si~~L~~-L~~L~L~~c~~L~~Lp~  699 (1153)
T PLN03210        626 LWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPS----SIQYLNK-LEDLDMSRCENLEILPT  699 (1153)
T ss_pred             cccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccch----hhhccCC-CCEEeCCCCCCcCccCC
Confidence            55556666677777776654333444 355666666666666554444443    3334444 55555555543333443


Q ss_pred             hcCCCCCCCEEEccCCC
Q 036216          172 QLGQFKNLDSLDLSNNS  188 (695)
Q Consensus       172 ~l~~l~~L~~L~L~~n~  188 (695)
                      .+ ++++|+.|++++|.
T Consensus       700 ~i-~l~sL~~L~Lsgc~  715 (1153)
T PLN03210        700 GI-NLKSLYRLNLSGCS  715 (1153)
T ss_pred             cC-CCCCCCEEeCCCCC
Confidence            33 45555555555543

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.86  E-value=4.4e-21  Score=207.71  Aligned_cols=262  Identities=26%  Similarity=0.320  Sum_probs=163.2

Q ss_pred             cceeecccccccccccCccccCccceEecccccceeecCCCCCCCcEEEccCCcCCCccchhhhhhhhhccccceeeccc
Q 036216          290 LYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDR  369 (695)
Q Consensus       290 L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~  369 (695)
                      -..|+++++.++..++.+.  ++|+.|++.+|+++. +|..+++|++|++++|+++. +|..       .++|+.|++.+
T Consensus       203 ~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~-LP~lp~~Lk~LdLs~N~Lts-LP~l-------p~sL~~L~Ls~  271 (788)
T PRK15387        203 NAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTS-LPALPPELRTLEVSGNQLTS-LPVL-------PPGLLELSIFS  271 (788)
T ss_pred             CcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCC-CCCCCCCCcEEEecCCccCc-ccCc-------ccccceeeccC
Confidence            3344555555543222222  245555555555443 34444566666666666553 2211       24566666666


Q ss_pred             ccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCC
Q 036216          370 NILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIP  449 (695)
Q Consensus       370 n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  449 (695)
                      |.+. .+|..   .++|+.|++++|+++ .+|.   ..++|+.|++++|++++ +|..   ..+|+.|++++|.+ ..+|
T Consensus       272 N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L-~~LP  338 (788)
T PRK15387        272 NPLT-HLPAL---PSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQL-TSLP  338 (788)
T ss_pred             Cchh-hhhhc---hhhcCEEECcCCccc-cccc---cccccceeECCCCcccc-CCCC---cccccccccccCcc-cccc
Confidence            6655 33332   245666777777766 3443   23567777777777663 3332   23466677777776 3455


Q ss_pred             hhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCC
Q 036216          450 SWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIG  529 (695)
Q Consensus       450 ~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~  529 (695)
                      .    ...+|+.|++++|++++ +|..   ..+|+.|++++|+++ .+|...                            
T Consensus       339 ~----lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l~----------------------------  381 (788)
T PRK15387        339 T----LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPALP----------------------------  381 (788)
T ss_pred             c----cccccceEecCCCccCC-CCCC---Ccccceehhhccccc-cCcccc----------------------------
Confidence            3    13467777777777763 4432   246677777777776 344311                            


Q ss_pred             CCccccceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECC
Q 036216          530 PGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFS  609 (695)
Q Consensus       530 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls  609 (695)
                                             ..|+.|++++|++++ +|..   .++|+.|++++|+++ .+|..   ..+|+.|+++
T Consensus       382 -----------------------~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls  430 (788)
T PRK15387        382 -----------------------SGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVY  430 (788)
T ss_pred             -----------------------cccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhc
Confidence                                   124788899999884 5543   357999999999998 56754   3568889999


Q ss_pred             CCcccccCCcCCcCCCCCCEEEcccCcCcccCCCC
Q 036216          610 VNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSS  644 (695)
Q Consensus       610 ~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~iP~~  644 (695)
                      +|+++ .+|..+..+++|+.|++++|+++|.+|..
T Consensus       431 ~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~  464 (788)
T PRK15387        431 RNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA  464 (788)
T ss_pred             cCccc-ccChHHhhccCCCeEECCCCCCCchHHHH
Confidence            99998 78999999999999999999999887763

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.85  E-value=7.9e-21  Score=205.78  Aligned_cols=266  Identities=25%  Similarity=0.345  Sum_probs=191.6

Q ss_pred             CCCEEEcccCCCccccChHHhhcccccceeecccccccccccCccccCccceEecccccceeecCCCCCCCcEEEccCCc
Q 036216          264 DLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNS  343 (695)
Q Consensus       264 ~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~  343 (695)
                      .-..|+++++.++ .+|..+.   ++|+.|++.+|+++..+ .  ..++|++|++++|+++. +|..+++|+.|++++|.
T Consensus       202 ~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~LP-~--lp~~Lk~LdLs~N~Lts-LP~lp~sL~~L~Ls~N~  273 (788)
T PRK15387        202 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSLP-A--LPPELRTLEVSGNQLTS-LPVLPPGLLELSIFSNP  273 (788)
T ss_pred             CCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCCCC-C--CCCCCcEEEecCCccCc-ccCcccccceeeccCCc
Confidence            3456677777766 6666543   35777777777776432 2  23677777777777774 45556788888888887


Q ss_pred             CCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceee
Q 036216          344 LSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGT  423 (695)
Q Consensus       344 l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  423 (695)
                      ++. ++..       ..+|+.|++++|.++ .+|.   ..++|+.|++++|++++ +|..   ...|+.|++++|++.+ 
T Consensus       274 L~~-Lp~l-------p~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-  336 (788)
T PRK15387        274 LTH-LPAL-------PSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-  336 (788)
T ss_pred             hhh-hhhc-------hhhcCEEECcCCccc-cccc---cccccceeECCCCcccc-CCCC---cccccccccccCcccc-
Confidence            763 2221       246778888888887 4454   24689999999998884 4542   2468888999998873 


Q ss_pred             CCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCcccCChhhhh
Q 036216          424 IPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHN  503 (695)
Q Consensus       424 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~  503 (695)
                      +|..   ..+|+.|++++|++. .+|.    ..++|+.|++++|++.+ +|..   ..+|+.|++++|+++ .+|...  
T Consensus       337 LP~l---p~~Lq~LdLS~N~Ls-~LP~----lp~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt-~LP~l~--  401 (788)
T PRK15387        337 LPTL---PSGLQELSVSDNQLA-SLPT----LPSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLT-SLPVLP--  401 (788)
T ss_pred             cccc---ccccceEecCCCccC-CCCC----CCcccceehhhcccccc-Cccc---ccccceEEecCCccc-CCCCcc--
Confidence            5532   257899999999884 5665    24678889999999884 5643   357899999999988 344321  


Q ss_pred             cccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEe
Q 036216          504 LTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLN  583 (695)
Q Consensus       504 l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  583 (695)
                                                                       +.|+.|++++|++++ +|..   ..+|+.|+
T Consensus       402 -------------------------------------------------s~L~~LdLS~N~Lss-IP~l---~~~L~~L~  428 (788)
T PRK15387        402 -------------------------------------------------SELKELMVSGNRLTS-LPML---PSGLLSLS  428 (788)
T ss_pred             -------------------------------------------------cCCCEEEccCCcCCC-CCcc---hhhhhhhh
Confidence                                                             124788999999984 6653   34688899


Q ss_pred             ccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCcC
Q 036216          584 LSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSS  623 (695)
Q Consensus       584 Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~  623 (695)
                      +++|.++ .+|+.+.++++|+.|+|++|++++..|..+..
T Consensus       429 Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~  467 (788)
T PRK15387        429 VYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE  467 (788)
T ss_pred             hccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence            9999998 78999999999999999999999888877644

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.78  E-value=4.5e-19  Score=193.67  Aligned_cols=201  Identities=26%  Similarity=0.340  Sum_probs=89.4

Q ss_pred             CCEEEcccCCCccccChHHhhcccccceeecccccccccccCccccCccceEecccccceeecCCCCCCCcEEEccCCcC
Q 036216          265 LQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNSL  344 (695)
Q Consensus       265 L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l  344 (695)
                      ...|++++++++ .+|..+   .+.++.|++++|.+...+..+.  .+|++|++++|.+.......+.+|+.|++++|.+
T Consensus       180 ~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~~~L~~L~Ls~N~L  253 (754)
T PRK15370        180 KTELRLKILGLT-TIPACI---PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLPDTIQEMELSINRI  253 (754)
T ss_pred             ceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhhccccEEECcCCcc
Confidence            345555555554 444432   1345555555555553322221  2455555555544422112233455555555555


Q ss_pred             CCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeC
Q 036216          345 SGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTI  424 (695)
Q Consensus       345 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  424 (695)
                      . .+|..+.      .+|+.|++++|.+. .+|..+.  ++|+.|++++|++++ +|..+.  ++|+.|++++|++.. +
T Consensus       254 ~-~LP~~l~------s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-L  319 (754)
T PRK15370        254 T-ELPERLP------SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-L  319 (754)
T ss_pred             C-cCChhHh------CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-C
Confidence            4 2222211      24555555555555 3343322  355555555555552 333221  345555555555542 2


Q ss_pred             CccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCc
Q 036216          425 PILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLS  494 (695)
Q Consensus       425 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~  494 (695)
                      |..+  .++|+.|++++|.+. .+|..+   .++|+.|++++|++. .+|..+  .++|+.|++++|+++
T Consensus       320 P~~l--~~sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt  380 (754)
T PRK15370        320 PETL--PPGLKTLEAGENALT-SLPASL---PPELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT  380 (754)
T ss_pred             Cccc--cccceeccccCCccc-cCChhh---cCcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC
Confidence            3222  134555555555542 244332   234555555555544 233332  134555555555544

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.78  E-value=5.9e-19  Score=192.77  Aligned_cols=245  Identities=27%  Similarity=0.398  Sum_probs=154.1

Q ss_pred             cceEecccccceeecCCCCCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeCC
Q 036216          313 LSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLS  392 (695)
Q Consensus       313 L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls  392 (695)
                      ...|+++++.++......++.++.|++++|.++. +|...      .++|+.|++++|.++ .+|..+.  ++|+.|+++
T Consensus       180 ~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~Lts-LP~~l------~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls  249 (754)
T PRK15370        180 KTELRLKILGLTTIPACIPEQITTLILDNNELKS-LPENL------QGNIKTLYANSNQLT-SIPATLP--DTIQEMELS  249 (754)
T ss_pred             ceEEEeCCCCcCcCCcccccCCcEEEecCCCCCc-CChhh------ccCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence            3445555554443222234456666666666653 22211      236667777777666 3454332  367777777


Q ss_pred             CCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCccccc
Q 036216          393 NNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGP  472 (695)
Q Consensus       393 ~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  472 (695)
                      +|.+. .+|..+.  .+|+.|++++|++. .+|..+.  ++|+.|++++|.+. .+|..+   .++|+.|++++|+++. 
T Consensus       250 ~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~l---p~sL~~L~Ls~N~Lt~-  318 (754)
T PRK15370        250 INRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHL---PSGITHLNVQSNSLTA-  318 (754)
T ss_pred             CCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccc---hhhHHHHHhcCCcccc-
Confidence            77776 4555443  46777777777776 4454442  46777777777763 455433   2357777777777763 


Q ss_pred             CCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhc
Q 036216          473 LPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEIL  552 (695)
Q Consensus       473 ~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  552 (695)
                      +|..+  .++|+.|++++|.++ .+|..+.                                                  
T Consensus       319 LP~~l--~~sL~~L~Ls~N~Lt-~LP~~l~--------------------------------------------------  345 (754)
T PRK15370        319 LPETL--PPGLKTLEAGENALT-SLPASLP--------------------------------------------------  345 (754)
T ss_pred             CCccc--cccceeccccCCccc-cCChhhc--------------------------------------------------
Confidence            44433  257777888887776 3443221                                                  


Q ss_pred             ccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCc----CCCCCC
Q 036216          553 NLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMS----SLTFLN  628 (695)
Q Consensus       553 ~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~----~l~~L~  628 (695)
                      +.|+.|++++|+++ .+|..+.  ++|++|+|++|.++ .+|..+.  .+|+.|++++|++. .+|..+.    .++.+.
T Consensus       346 ~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~  418 (754)
T PRK15370        346 PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPT  418 (754)
T ss_pred             CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCcc
Confidence            23478888888887 5665553  58888899988888 5666554  46888889998887 5666543    347788


Q ss_pred             EEEcccCcCc
Q 036216          629 HLNLSNNYLT  638 (695)
Q Consensus       629 ~L~ls~N~l~  638 (695)
                      .+++.+|+++
T Consensus       419 ~L~L~~Npls  428 (754)
T PRK15370        419 RIIVEYNPFS  428 (754)
T ss_pred             EEEeeCCCcc
Confidence            8999999886

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.73  E-value=4.8e-19  Score=180.77  Aligned_cols=160  Identities=29%  Similarity=0.268  Sum_probs=68.9

Q ss_pred             CcEEEccCCcCCCccchhhhhhhhhccccceeecccccccC------CCCccccCCCCCCEEeCCCCcccccCCccccCC
Q 036216          334 LTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQG------KLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSL  407 (695)
Q Consensus       334 L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~------~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l  407 (695)
                      |+.++++++.+++.....++..+...+.+++++++++.+.+      .++..+..+++|+.|++++|.+.+..+..+..+
T Consensus        25 L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l  104 (319)
T cd00116          25 LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESL  104 (319)
T ss_pred             ccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHH
Confidence            44555555544433223333333344445555555554431      112233444555555555555543333333323


Q ss_pred             CC---CcEEECcCCccee----eCCccccCC-CCCcEEEcCCCcccccCC----hhhhhcCCCCcEEEcCCCccccc---
Q 036216          408 SS---LVSLHLRKNRLSG----TIPILLKNC-TSLVTLDVGENEVFGNIP----SWFGERFSRMVLLILRSNNFDGP---  472 (695)
Q Consensus       408 ~~---L~~L~l~~n~l~~----~~~~~~~~l-~~L~~L~l~~n~~~~~~~----~~~~~~l~~L~~L~l~~n~~~~~---  472 (695)
                      .+   |++|++++|++.+    .+...+..+ ++|+.|++++|.+.+...    ..+ ..+++|++|++++|.+.+.   
T Consensus       105 ~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~  183 (319)
T cd00116         105 LRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL-RANRDLKELNLANNGIGDAGIR  183 (319)
T ss_pred             hccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH-HhCCCcCEEECcCCCCchHHHH
Confidence            22   5555555555442    111223333 455555555555442111    111 1334455555555554421   


Q ss_pred             -CCccccCCCCCCEEeCCCCcCc
Q 036216          473 -LPTELCDLAFLQILDLADNNLS  494 (695)
Q Consensus       473 -~~~~l~~l~~L~~L~L~~n~l~  494 (695)
                       ++..+..+++|+.|++++|.++
T Consensus       184 ~l~~~l~~~~~L~~L~L~~n~i~  206 (319)
T cd00116         184 ALAEGLKANCNLEVLDLNNNGLT  206 (319)
T ss_pred             HHHHHHHhCCCCCEEeccCCccC
Confidence             1222333445555555555544

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.71  E-value=2.3e-18  Score=175.74  Aligned_cols=286  Identities=25%  Similarity=0.279  Sum_probs=150.4

Q ss_pred             EEEcCCCcCCCCC-ccCCCCCCCCCEEECCCCCCCCC---CCchhhcCCCCCCEEEcCCCcCcc------cCCccCCCCC
Q 036216            7 ELDLSNCQLHHFP-QLPVANFSTLTTLDLSHNQFDNS---FVPAWVFGLSRLHFLNLGYNNFQG------PIPEGLQNLT   76 (695)
Q Consensus         7 ~L~ls~~~l~~~~-~~~~~~l~~L~~L~Ls~n~i~~~---~~~~~~~~l~~L~~L~Ls~n~i~~------~~~~~~~~l~   76 (695)
                      .|+|.++.+..-. ...|..+..|++|+++++.++..   .++..+...+.+++|+++++.+.+      .++..+..++
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            4666666665322 23455666788888888777431   133445566677788887776652      2234556677


Q ss_pred             CCCEEeCCCCCCCCCchhhhcCCCC---CCEEEcccCcCCc----ccchhhcCC-CCCCEEEccCCcCccccchhhhhhh
Q 036216           77 SLKHLGLPFNHFSSSVPKWFDRLTH---LEHLSLSYNSLEG----RIPRSMARL-CNLRRLYLGGAKLNQEISEILEIFS  148 (695)
Q Consensus        77 ~L~~L~L~~n~l~~~~p~~~~~l~~---L~~L~Ls~n~l~~----~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~  148 (695)
                      +|++|++++|.+.+..+..+..+.+   |++|++++|.+.+    .+...+..+ ++|+.|++++|.+++.....+...+
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~  161 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL  161 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence            7777777777776555555555554   7777777777662    223345555 6777777777777643333222233


Q ss_pred             cccccccceEEccCcccccc----cchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEccc
Q 036216          149 GCVSNGLESLALASSSISGH----LTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGA  224 (695)
Q Consensus       149 ~~~~~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~  224 (695)
                      ..... |++|++++|.+.+.    ++..+..+++|++|++++|.+.+..         ...+.. .+..+++|+.|++++
T Consensus       162 ~~~~~-L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~---------~~~l~~-~~~~~~~L~~L~ls~  230 (319)
T cd00116         162 RANRD-LKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEG---------ASALAE-TLASLKSLEVLNLGD  230 (319)
T ss_pred             HhCCC-cCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHH---------HHHHHH-HhcccCCCCEEecCC
Confidence            33333 66666666666532    2233444456666666666553110         000111 234455555555555


Q ss_pred             ccceeecCCCCCCCCCccEEEccCCCCCCCCCccccCCCCCCEEEcccCCCccccCh---HHhhcccccceeeccccccc
Q 036216          225 NKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPN---RLLKSASQLYLLDLGHNQIH  301 (695)
Q Consensus       225 n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~---~~~~~l~~L~~L~l~~n~l~  301 (695)
                      |.+.......+...                   .....+.|++|++++|.+++....   ..+..+++|+.+++++|.+.
T Consensus       231 n~l~~~~~~~l~~~-------------------~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~  291 (319)
T cd00116         231 NNLTDAGAAALASA-------------------LLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG  291 (319)
T ss_pred             CcCchHHHHHHHHH-------------------HhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence            55442111111000                   000124566666666655421111   12233456677777777665


Q ss_pred             cc----cc-Ccccc-CccceEeccccc
Q 036216          302 GE----LT-NLTKA-SQLSYLSLIANN  322 (695)
Q Consensus       302 ~~----~~-~~~~~-~~L~~L~l~~n~  322 (695)
                      ..    .. .+... +.++++++.+++
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         292 EEGAQLLAESLLEPGNELESLWVKDDS  318 (319)
T ss_pred             HHHHHHHHHHHhhcCCchhhcccCCCC
Confidence            33    11 22222 466777766654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.70  E-value=1.9e-19  Score=151.23  Aligned_cols=108  Identities=34%  Similarity=0.603  Sum_probs=52.9

Q ss_pred             CCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCE
Q 036216           25 NFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEH  104 (695)
Q Consensus        25 ~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  104 (695)
                      ++.+.+.|.||+|+++.  +|..+..+.+|++|++++|+|+ .+|..++.+++|++|+++-|++. .+|..|+.++.|+.
T Consensus        31 ~~s~ITrLtLSHNKl~~--vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev  106 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLTV--VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV  106 (264)
T ss_pred             chhhhhhhhcccCceee--cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence            33444455555555544  4444555555555555555554 44445555555555555555544 44555555555555


Q ss_pred             EEcccCcCCc-ccchhhcCCCCCCEEEccCCcC
Q 036216          105 LSLSYNSLEG-RIPRSMARLCNLRRLYLGGAKL  136 (695)
Q Consensus       105 L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l  136 (695)
                      ||+++|++.. .+|..|..+..|+.|+++.|.+
T Consensus       107 ldltynnl~e~~lpgnff~m~tlralyl~dndf  139 (264)
T KOG0617|consen  107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF  139 (264)
T ss_pred             hhccccccccccCCcchhHHHHHHHHHhcCCCc
Confidence            5555554432 3344444444444444444443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.65  E-value=4.1e-18  Score=143.31  Aligned_cols=183  Identities=23%  Similarity=0.453  Sum_probs=136.6

Q ss_pred             CCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCE
Q 036216          406 SLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQI  485 (695)
Q Consensus       406 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~  485 (695)
                      .+...+.|.+++|+++ .+|..++.+.+|+.|++++|++ ..+|..+. .+++|+.|++.-|++. ..|..|+.++.|+.
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqi-e~lp~~is-sl~klr~lnvgmnrl~-~lprgfgs~p~lev  106 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQI-EELPTSIS-SLPKLRILNVGMNRLN-ILPRGFGSFPALEV  106 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchh-hhcChhhh-hchhhhheecchhhhh-cCccccCCCchhhh
Confidence            4455666666666666 4555566666667777766666 56666665 5777777777777765 67888888888899


Q ss_pred             EeCCCCcCcc-cCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCcc
Q 036216          486 LDLADNNLSG-TIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNL  564 (695)
Q Consensus       486 L~L~~n~l~~-~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~  564 (695)
                      ||+.+|++.. .+|..|..++.|                                                +-|+|+.|.
T Consensus       107 ldltynnl~e~~lpgnff~m~tl------------------------------------------------ralyl~dnd  138 (264)
T KOG0617|consen  107 LDLTYNNLNENSLPGNFFYMTTL------------------------------------------------RALYLGDND  138 (264)
T ss_pred             hhccccccccccCCcchhHHHHH------------------------------------------------HHHHhcCCC
Confidence            9998888763 456666666655                                                556678888


Q ss_pred             ccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCcCCCC---CCEEEcccCcCcccC
Q 036216          565 FSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTF---LNHLNLSNNYLTGKI  641 (695)
Q Consensus       565 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~---L~~L~ls~N~l~~~i  641 (695)
                      +. .+|..++.+++|+.|.+..|.+. .+|..++.++.|+.|++.+|+++ .+|..++.+.-   =+.+.+.+|++...|
T Consensus       139 fe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pI  215 (264)
T KOG0617|consen  139 FE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPI  215 (264)
T ss_pred             cc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChH
Confidence            87 88889999999999999999998 88999999999999999999999 77877776542   245667788876555


Q ss_pred             CC
Q 036216          642 PS  643 (695)
Q Consensus       642 P~  643 (695)
                      -+
T Consensus       216 ae  217 (264)
T KOG0617|consen  216 AE  217 (264)
T ss_pred             HH
Confidence            44

>PLN03150 hypothetical protein; Provisional

Probab=99.33  E-value=2.2e-12  Score=141.18  Aligned_cols=116  Identities=36%  Similarity=0.640  Sum_probs=104.8

Q ss_pred             ccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEEccc
Q 036216          555 VRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSN  634 (695)
Q Consensus       555 l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~  634 (695)
                      ++.|+|++|.+.|.+|..++.+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|++++.+|+.+.++++|+.|+|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            58899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCcccCCCCc--ccCccccccccCC-cccCCCCCCCCC
Q 036216          635 NYLTGKIPSST--QLQSFNASCFLGN-NLCGAPLPKNCT  670 (695)
Q Consensus       635 N~l~~~iP~~~--~~~~~~~~~~~~n-~l~~~~~~~~c~  670 (695)
                      |+++|.+|...  .........+.+| .+|+.|....|.
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            99999999862  2234456678899 899987666785

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.30  E-value=6.3e-14  Score=140.19  Aligned_cols=195  Identities=27%  Similarity=0.424  Sum_probs=155.2

Q ss_pred             CCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEE
Q 036216          383 YQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLL  462 (695)
Q Consensus       383 ~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L  462 (695)
                      +.--...|++.|++. .+|..+..+..|+.+.++.|.+. .+|..++++..|+.+|++.|++ ..+|..++  .--|+.|
T Consensus        74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~Nql-S~lp~~lC--~lpLkvl  148 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQL-SHLPDGLC--DLPLKVL  148 (722)
T ss_pred             ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchh-hcCChhhh--cCcceeE
Confidence            344466789999998 78888888889999999999998 7888899999999999999998 67787775  4468889


Q ss_pred             EcCCCcccccCCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEec
Q 036216          463 ILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTK  542 (695)
Q Consensus       463 ~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  542 (695)
                      .+++|+++ .+|..++....|..||.+.|++. .+|..+.++.+|                                   
T Consensus       149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~sl-----------------------------------  191 (722)
T KOG0532|consen  149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSL-----------------------------------  191 (722)
T ss_pred             EEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHH-----------------------------------
Confidence            99999987 77888888888999999999888 778777777776                                   


Q ss_pred             CCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCc
Q 036216          543 GVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMS  622 (695)
Q Consensus       543 ~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~  622 (695)
                                   +.|.+..|++. .+|+.+..+ .|..||+|+|++. .+|-+|.+|+.|++|.|.+|.+. ..|..+.
T Consensus       192 -------------r~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC  254 (722)
T KOG0532|consen  192 -------------RDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQIC  254 (722)
T ss_pred             -------------HHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHH
Confidence                         44456667766 677777744 6888899999888 88888888999999999888887 4555443


Q ss_pred             ---CCCCCCEEEcccCc
Q 036216          623 ---SLTFLNHLNLSNNY  636 (695)
Q Consensus       623 ---~l~~L~~L~ls~N~  636 (695)
                         ...=.++|+...|+
T Consensus       255 ~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  255 EKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             hccceeeeeeecchhcc
Confidence               33445778888885

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.26  E-value=8.8e-12  Score=111.02  Aligned_cols=123  Identities=29%  Similarity=0.319  Sum_probs=42.5

Q ss_pred             EcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhc-CCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCCC
Q 036216            9 DLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNH   87 (695)
Q Consensus         9 ~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~   87 (695)
                      .+..+.|..++.  +.+..++++|+|.+|.|+.+   +.+. .+.+|++|++++|.|+..  +.+..+++|++|++++|+
T Consensus         3 ~lt~~~i~~~~~--~~n~~~~~~L~L~~n~I~~I---e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~   75 (175)
T PF14580_consen    3 RLTANMIEQIAQ--YNNPVKLRELNLRGNQISTI---ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNR   75 (175)
T ss_dssp             --------------------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS-
T ss_pred             cccccccccccc--cccccccccccccccccccc---cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCC
Confidence            344555666654  56677899999999999863   3354 578999999999999854  468889999999999999


Q ss_pred             CCCCchhhhcCCCCCCEEEcccCcCCccc-chhhcCCCCCCEEEccCCcCcc
Q 036216           88 FSSSVPKWFDRLTHLEHLSLSYNSLEGRI-PRSMARLCNLRRLYLGGAKLNQ  138 (695)
Q Consensus        88 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~  138 (695)
                      ++...+.....+++|++|++++|+|.... -..++.+++|+.|++.+|++..
T Consensus        76 I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~  127 (175)
T PF14580_consen   76 ISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE  127 (175)
T ss_dssp             --S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred             CCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence            99543332346899999999999987422 3567789999999999998864

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.25  E-value=1e-11  Score=130.36  Aligned_cols=123  Identities=33%  Similarity=0.513  Sum_probs=57.5

Q ss_pred             eeecccccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCC-CCcEEECcCCcceeeCCccccCCCCCcEEEcCCC
Q 036216          364 FLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLS-SLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGEN  442 (695)
Q Consensus       364 ~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  442 (695)
                      .+....+.+.... ..+...+.++.|++.+|.++ .++....... +|+.|++++|++. .+|..+..++.|+.|++++|
T Consensus        97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccCc-hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            3445555442111 22333455666666666665 3333334442 5666666666655 33334455555555555555


Q ss_pred             cccccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCc
Q 036216          443 EVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNN  492 (695)
Q Consensus       443 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~  492 (695)
                      ++ ..+|.... ..+.|+.|++++|++. .+|........|+++.+++|+
T Consensus       174 ~l-~~l~~~~~-~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~  220 (394)
T COG4886         174 DL-SDLPKLLS-NLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNS  220 (394)
T ss_pred             hh-hhhhhhhh-hhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCc
Confidence            55 33333321 2444555555555554 333333333334444444443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.23  E-value=3.1e-13  Score=135.34  Aligned_cols=195  Identities=26%  Similarity=0.377  Sum_probs=157.3

Q ss_pred             ccccceeecccccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEE
Q 036216          359 TMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLD  438 (695)
Q Consensus       359 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  438 (695)
                      +.--...+++.|.+. .+|..+..+..|+.+.+..|.+. .+|..+..+..|++++++.|+++ .+|..++.|+ |+.|-
T Consensus        74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli  149 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI  149 (722)
T ss_pred             ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence            334456788888887 77888888888999999988887 78888888999999999999988 7777777766 88899


Q ss_pred             cCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcc
Q 036216          439 VGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAI  518 (695)
Q Consensus       439 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l  518 (695)
                      +++|++ +.+|..++ ..+.|..|+.+.|.+. .+|..++++.+|+.|.++.|++. .+|..+..++             
T Consensus       150 ~sNNkl-~~lp~~ig-~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-------------  212 (722)
T KOG0532|consen  150 VSNNKL-TSLPEEIG-LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-------------  212 (722)
T ss_pred             EecCcc-ccCCcccc-cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-------------
Confidence            999988 78888887 7888999999999887 67778889999999999999888 6666555333             


Q ss_pred             cccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCcccc
Q 036216          519 EYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIG  598 (695)
Q Consensus       519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~  598 (695)
                                                          |..||+|+|+++ .+|-.|.+|+.|++|-|.+|.+. ..|..+.
T Consensus       213 ------------------------------------Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC  254 (722)
T KOG0532|consen  213 ------------------------------------LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQIC  254 (722)
T ss_pred             ------------------------------------eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHH
Confidence                                                367899999998 88889999999999999999988 6676653


Q ss_pred             ---CcCCCCEEECCCCc
Q 036216          599 ---TMRSLESIDFSVNK  612 (695)
Q Consensus       599 ---~l~~L~~L~Ls~n~  612 (695)
                         ...=.++|+..-|+
T Consensus       255 ~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  255 EKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             hccceeeeeeecchhcc
Confidence               34445677777774

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.18  E-value=1.5e-11  Score=109.56  Aligned_cols=124  Identities=31%  Similarity=0.357  Sum_probs=54.0

Q ss_pred             CCCcEEEcCCCcCCCCCccCCC-CCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccC-CCCCCCCE
Q 036216            3 PSLVELDLSNCQLHHFPQLPVA-NFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGL-QNLTSLKH   80 (695)
Q Consensus         3 ~~L~~L~ls~~~l~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~   80 (695)
                      .++++|+|.+|.|+.|..  +. .+.+|+.|++++|.|+.  ++ .+..+++|++|++++|+|+. +.+.+ ..+++|++
T Consensus        19 ~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N~I~~--l~-~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~   92 (175)
T PF14580_consen   19 VKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNNQITK--LE-GLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQE   92 (175)
T ss_dssp             -----------------S----TT-TT--EEE-TTS--S----T-T----TT--EEE--SS---S--CHHHHHH-TT--E
T ss_pred             cccccccccccccccccc--hhhhhcCCCEEECCCCCCcc--cc-CccChhhhhhcccCCCCCCc-cccchHHhCCcCCE
Confidence            468999999999999875  44 67899999999999997  43 47789999999999999995 44444 46899999


Q ss_pred             EeCCCCCCCCC-chhhhcCCCCCCEEEcccCcCCccc---chhhcCCCCCCEEEcc
Q 036216           81 LGLPFNHFSSS-VPKWFDRLTHLEHLSLSYNSLEGRI---PRSMARLCNLRRLYLG  132 (695)
Q Consensus        81 L~L~~n~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~L~  132 (695)
                      |++++|++... .-..+..+++|++|++.+|.+....   ...+..+|+|+.||-.
T Consensus        93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            99999999753 1245788999999999999987431   2346789999998754

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.16  E-value=4.3e-11  Score=125.61  Aligned_cols=129  Identities=35%  Similarity=0.463  Sum_probs=70.7

Q ss_pred             cccceeecccccccCCCCccccCCC-CCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEE
Q 036216          360 MKLKFLFLDRNILQGKLPDCWMSYQ-NLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLD  438 (695)
Q Consensus       360 ~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  438 (695)
                      +.++.+++.+|.++ .++....... +|+.|++++|++. .+|..+..+++|+.|++++|++. .+|......+.|+.|+
T Consensus       116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~  192 (394)
T COG4886         116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLD  192 (394)
T ss_pred             cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhee
Confidence            45666666666665 3333344442 6666666666665 34344556666666666666665 3333333556666666


Q ss_pred             cCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCc
Q 036216          439 VGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLS  494 (695)
Q Consensus       439 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~  494 (695)
                      +++|.+ ..+|.... ....|+++.+++|+.. ..+..+..+.++..+.+.+|++.
T Consensus       193 ls~N~i-~~l~~~~~-~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~  245 (394)
T COG4886         193 LSGNKI-SDLPPEIE-LLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE  245 (394)
T ss_pred             ccCCcc-ccCchhhh-hhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee
Confidence            666666 45554432 2344666666666433 23344555555555555555554

>PLN03150 hypothetical protein; Provisional

Probab=99.13  E-value=8.6e-11  Score=128.81  Aligned_cols=114  Identities=32%  Similarity=0.583  Sum_probs=90.0

Q ss_pred             CCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcC
Q 036216          482 FLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFS  561 (695)
Q Consensus       482 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls  561 (695)
                      .++.|+|++|.+.|.+|..+..+++|                                                +.|+|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L------------------------------------------------~~L~Ls  450 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHL------------------------------------------------QSINLS  450 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCC------------------------------------------------CEEECC
Confidence            36778888888888888777766665                                                677888


Q ss_pred             CccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCcCC-CCCCEEEcccCcCccc
Q 036216          562 KNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSL-TFLNHLNLSNNYLTGK  640 (695)
Q Consensus       562 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~ls~N~l~~~  640 (695)
                      +|.+.|.+|..++.+++|+.|+|++|++++.+|+.++++++|+.|+|++|++++.+|..+..+ .++..+++.+|+..+.
T Consensus       451 ~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~  530 (623)
T PLN03150        451 GNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCG  530 (623)
T ss_pred             CCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccC
Confidence            888888888888888888888888888888888888888888888888888888888877653 4667888888876555


Q ss_pred             CCC
Q 036216          641 IPS  643 (695)
Q Consensus       641 iP~  643 (695)
                      +|.
T Consensus       531 ~p~  533 (623)
T PLN03150        531 IPG  533 (623)
T ss_pred             CCC
Confidence            553

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.09  E-value=1.8e-11  Score=115.97  Aligned_cols=250  Identities=24%  Similarity=0.313  Sum_probs=127.4

Q ss_pred             CCCcEEEccCCcCCCccchhhhhhhhhccccceeeccccc---ccCCCCc-------cccCCCCCCEEeCCCCcccccCC
Q 036216          332 SNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNI---LQGKLPD-------CWMSYQNLMALDLSNNKFTGNLP  401 (695)
Q Consensus       332 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~---l~~~~~~-------~~~~~~~L~~L~ls~n~~~~~~~  401 (695)
                      .+++.+++++|.+...-...++..+...+.|+..++++--   ....+|.       ++..++.|++|+||+|-+....+
T Consensus        30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~  109 (382)
T KOG1909|consen   30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI  109 (382)
T ss_pred             CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence            4667777777777666566666666666677776666532   1122232       23445566666666666543333


Q ss_pred             cc----ccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCccccc----C
Q 036216          402 TS----LGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGP----L  473 (695)
Q Consensus       402 ~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~----~  473 (695)
                      ..    +..+..|+.|.|.+|.+...-...++.  .|..|.  .+   ..+     ..-+.|+++...+|++...    +
T Consensus       110 ~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~--~~---kk~-----~~~~~Lrv~i~~rNrlen~ga~~~  177 (382)
T KOG1909|consen  110 RGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA--VN---KKA-----ASKPKLRVFICGRNRLENGGATAL  177 (382)
T ss_pred             HHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH--HH---hcc-----CCCcceEEEEeeccccccccHHHH
Confidence            22    234556666666666554111111000  000000  00   000     0233444444444444321    1


Q ss_pred             CccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcc
Q 036216          474 PTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILN  553 (695)
Q Consensus       474 ~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  553 (695)
                      ...|...+.|+.+.+..|.|.   |...   +.+                                      ..-...++
T Consensus       178 A~~~~~~~~leevr~~qN~I~---~eG~---~al--------------------------------------~eal~~~~  213 (382)
T KOG1909|consen  178 AEAFQSHPTLEEVRLSQNGIR---PEGV---TAL--------------------------------------AEALEHCP  213 (382)
T ss_pred             HHHHHhccccceEEEeccccc---Cchh---HHH--------------------------------------HHHHHhCC
Confidence            122334445555555555443   1100   000                                      00011223


Q ss_pred             cccEEEcCCccccc----cCCccccCCCCCCEEeccCCcccccCCccc-----cCcCCCCEEECCCCcccc----cCCcC
Q 036216          554 LVRIIDFSKNLFSG----TLPMGLTNLKAVQSLNLSYNIFTGRIPETI-----GTMRSLESIDFSVNKFTG----EIPQS  620 (695)
Q Consensus       554 ~l~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-----~~l~~L~~L~Ls~n~l~~----~~p~~  620 (695)
                      .|+.|||..|-++.    .+...++.+++|++|++++|.+......+|     ...++|++|.+.+|.++.    .+...
T Consensus       214 ~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~  293 (382)
T KOG1909|consen  214 HLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAAC  293 (382)
T ss_pred             cceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHH
Confidence            33555555555542    223445667788888888888765544433     236789999999998864    23344


Q ss_pred             CcCCCCCCEEEcccCcC
Q 036216          621 MSSLTFLNHLNLSNNYL  637 (695)
Q Consensus       621 l~~l~~L~~L~ls~N~l  637 (695)
                      +...+.|.+|+|++|.+
T Consensus       294 ~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  294 MAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HhcchhhHHhcCCcccc
Confidence            56688899999999988

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.09  E-value=1.8e-11  Score=119.12  Aligned_cols=144  Identities=26%  Similarity=0.214  Sum_probs=80.9

Q ss_pred             hhhhhhhhhccccceeecccccccCCCC--ccccCCCCCCEEeCCCCcccc--cCCccccCCCCCcEEECcCCcceeeCC
Q 036216          350 HFLCYTINETMKLKFLFLDRNILQGKLP--DCWMSYQNLMALDLSNNKFTG--NLPTSLGSLSSLVSLHLRKNRLSGTIP  425 (695)
Q Consensus       350 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~~~~L~~L~ls~n~~~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~  425 (695)
                      +.+...=.++.+|+++.+.++... ..+  .....|++++.||++.|-+..  .+......+|+|+.|+++.|++.....
T Consensus       111 Dki~akQsn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~  189 (505)
T KOG3207|consen  111 DKIAAKQSNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS  189 (505)
T ss_pred             HHHHHHhhhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcc
Confidence            333333345667777777777665 222  245567788888888776653  122334567778888888877653221


Q ss_pred             c-cccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCc
Q 036216          426 I-LLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLS  494 (695)
Q Consensus       426 ~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~  494 (695)
                      . .-..++.|+.|.++.|.++..--.++...+|+|+.|++..|.....-.....-+..|+.|||++|++.
T Consensus       190 s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li  259 (505)
T KOG3207|consen  190 SNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI  259 (505)
T ss_pred             ccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc
Confidence            1 11235666777777776654434444445666666666666422222222333455666666666554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.06  E-value=3.5e-11  Score=111.22  Aligned_cols=84  Identities=24%  Similarity=0.354  Sum_probs=58.6

Q ss_pred             ccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccC-CcCCcCCCCCCEEEcc
Q 036216          555 VRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEI-PQSMSSLTFLNHLNLS  633 (695)
Q Consensus       555 l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~ls  633 (695)
                      |+.||||+|.++ .+..+-..+.+.++|.|++|.+. .+ ..++.+-+|..||+++|+|.... -.++++++.|+.+.|.
T Consensus       331 L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE-~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~  407 (490)
T KOG1259|consen  331 LQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIE-TL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLT  407 (490)
T ss_pred             ceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHh-hh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhc
Confidence            356666666665 33333345667788888888876 33 34677888888888888887432 2467888888889999


Q ss_pred             cCcCcccC
Q 036216          634 NNYLTGKI  641 (695)
Q Consensus       634 ~N~l~~~i  641 (695)
                      +|++.+.+
T Consensus       408 ~NPl~~~v  415 (490)
T KOG1259|consen  408 GNPLAGSV  415 (490)
T ss_pred             CCCccccc
Confidence            99888543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.06  E-value=3.1e-11  Score=111.54  Aligned_cols=133  Identities=27%  Similarity=0.305  Sum_probs=80.1

Q ss_pred             CCCCCEEeCCCCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccc
Q 036216           75 LTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNG  154 (695)
Q Consensus        75 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~  154 (695)
                      ...|+++|||+|.|+ .+.+++.-.++++.|++|+|.+...  ..+..+++|+.|||++|.++....     +..++.+ 
T Consensus       283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~G-----wh~KLGN-  353 (490)
T KOG1259|consen  283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECVG-----WHLKLGN-  353 (490)
T ss_pred             Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhhh-----hHhhhcC-
Confidence            356667777777666 4445555666777777777766622  336666777777777766543211     3333444 


Q ss_pred             cceEEccCcccccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeec
Q 036216          155 LESLALASSSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKV  231 (695)
Q Consensus       155 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~  231 (695)
                      ++.|.|+.|.+...  ..++.+-+|..||+++|+|...+..             ..++++|.|+.+.+.+|.+....
T Consensus       354 IKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV-------------~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  354 IKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEV-------------NHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             EeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHh-------------cccccccHHHHHhhcCCCccccc
Confidence            67777777766542  2245556677777777777533211             14677777777777777776543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.00  E-value=1.4e-10  Score=109.91  Aligned_cols=37  Identities=24%  Similarity=0.250  Sum_probs=20.1

Q ss_pred             cCCCCCCEEEcCCCcCccc----CCccCCCCCCCCEEeCCC
Q 036216           49 FGLSRLHFLNLGYNNFQGP----IPEGLQNLTSLKHLGLPF   85 (695)
Q Consensus        49 ~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~L~~   85 (695)
                      ..+..++.++|++|.+...    +...+.+.+.|+..+++.
T Consensus        27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd   67 (382)
T KOG1909|consen   27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSD   67 (382)
T ss_pred             cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHh
Confidence            3455666666666665532    223444555666666554

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.00  E-value=1.3e-10  Score=113.26  Aligned_cols=184  Identities=23%  Similarity=0.258  Sum_probs=96.3

Q ss_pred             CCCccEEEccCCCCCCCCC-ccccCCCCCCEEEcccCCCccccC-hHHhhcccccceeecccccccccccCccccCccce
Q 036216          238 PFQLIELGLRSCDVGSRFP-LWLYSQKDLQFLDLFNSGISGTFP-NRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSY  315 (695)
Q Consensus       238 ~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~i~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~  315 (695)
                      +.+|+++.+.++....... .....+++++.|+++.|-+..-.+ ..+...+|+|+.|+++.|++...+.+         
T Consensus       120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s---------  190 (505)
T KOG3207|consen  120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS---------  190 (505)
T ss_pred             HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc---------
Confidence            4456666666655442221 123344555555555554431111 12233444555555555444322211         


Q ss_pred             EecccccceeecCCCCCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeCCCCc
Q 036216          316 LSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNK  395 (695)
Q Consensus       316 L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~  395 (695)
                                .....++.++.|.++.|.++.   .........+|+|+.|.+..|............+..|++|||++|.
T Consensus       191 ----------~~~~~l~~lK~L~l~~CGls~---k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~  257 (505)
T KOG3207|consen  191 ----------NTTLLLSHLKQLVLNSCGLSW---KDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN  257 (505)
T ss_pred             ----------cchhhhhhhheEEeccCCCCH---HHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc
Confidence                      111234567777777777663   2222233357788888888885332333344456778888888888


Q ss_pred             ccccCC--ccccCCCCCcEEECcCCcceeeC-Ccc-----ccCCCCCcEEEcCCCcc
Q 036216          396 FTGNLP--TSLGSLSSLVSLHLRKNRLSGTI-PIL-----LKNCTSLVTLDVGENEV  444 (695)
Q Consensus       396 ~~~~~~--~~~~~l~~L~~L~l~~n~l~~~~-~~~-----~~~l~~L~~L~l~~n~~  444 (695)
                      +.. .+  ...+.++.|+.|+++.|.+..+- |+.     ...+++|+.|++..|++
T Consensus       258 li~-~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I  313 (505)
T KOG3207|consen  258 LID-FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI  313 (505)
T ss_pred             ccc-cccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence            763 33  34566788888888888776322 221     23345556666655555

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.99  E-value=3.5e-10  Score=126.48  Aligned_cols=128  Identities=25%  Similarity=0.285  Sum_probs=80.2

Q ss_pred             CCcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCC--CCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEE
Q 036216            4 SLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQ--FDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHL   81 (695)
Q Consensus         4 ~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~--i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   81 (695)
                      ..++..+-++.+..++...  ..+.|++|-+..|.  +..+ .+++|..++.|++|||++|.--+.+|+.++.+.+||+|
T Consensus       524 ~~rr~s~~~~~~~~~~~~~--~~~~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL  600 (889)
T KOG4658|consen  524 SVRRMSLMNNKIEHIAGSS--ENPKLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL  600 (889)
T ss_pred             heeEEEEeccchhhccCCC--CCCccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence            3455666666666555422  23467777766664  4432 34445567777777777666555677777777777777


Q ss_pred             eCCCCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCc
Q 036216           82 GLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAK  135 (695)
Q Consensus        82 ~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  135 (695)
                      ++++..+. .+|..++++..|.+|++..+.-....|.....+.+||+|.+....
T Consensus       601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             cccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            77777776 567777777777777777665444445556667777777665543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.95  E-value=1.2e-09  Score=122.18  Aligned_cols=112  Identities=23%  Similarity=0.272  Sum_probs=94.4

Q ss_pred             CCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCc--CcccCCccCCCCCCCCEEeCCCCCCCCCchhhhcCCC
Q 036216           23 VANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNN--FQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLT  100 (695)
Q Consensus        23 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~--i~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~  100 (695)
                      ..+....|...+.+|.+..  ++... .++.|++|-+..|.  +.....+.|..++.|++|||++|.-.+.+|..++.+.
T Consensus       519 ~~~~~~~rr~s~~~~~~~~--~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li  595 (889)
T KOG4658|consen  519 VKSWNSVRRMSLMNNKIEH--IAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELV  595 (889)
T ss_pred             ccchhheeEEEEeccchhh--ccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhh
Confidence            3455778999999998865  44443 56689999999996  5645566689999999999999987779999999999


Q ss_pred             CCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCcc
Q 036216          101 HLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQ  138 (695)
Q Consensus       101 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  138 (695)
                      +||+|++++..++ .+|.+++++.+|.+|++..+.-..
T Consensus       596 ~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~  632 (889)
T KOG4658|consen  596 HLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLE  632 (889)
T ss_pred             hhhcccccCCCcc-ccchHHHHHHhhheeccccccccc
Confidence            9999999999999 899999999999999999876433

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.94  E-value=7.6e-10  Score=80.94  Aligned_cols=61  Identities=38%  Similarity=0.523  Sum_probs=41.0

Q ss_pred             CCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEEcccCcC
Q 036216          577 KAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYL  637 (695)
Q Consensus       577 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l  637 (695)
                      ++|++|++++|+++...++.|.++++|++|++++|+++...|.+|..+++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            3566677777766655556666777777777777777666666677777777777777654

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.87  E-value=1.7e-09  Score=79.02  Aligned_cols=61  Identities=26%  Similarity=0.422  Sum_probs=56.8

Q ss_pred             ccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcc
Q 036216          553 NLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKF  613 (695)
Q Consensus       553 ~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l  613 (695)
                      +.|++|++++|+++...+..|.++++|++|++++|+++...|+.|.++++|+.|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            3579999999999987778999999999999999999988889999999999999999985

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.78  E-value=8.5e-10  Score=115.80  Aligned_cols=128  Identities=30%  Similarity=0.449  Sum_probs=76.6

Q ss_pred             CCCcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEe
Q 036216            3 PSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLG   82 (695)
Q Consensus         3 ~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   82 (695)
                      ..++.+++..|.+..+.. .+..+++|+.|++.+|.|..  +...+..+++|++|++++|.|+.+  ..+..++.|+.|+
T Consensus        72 ~~l~~l~l~~n~i~~~~~-~l~~~~~l~~l~l~~n~i~~--i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~  146 (414)
T KOG0531|consen   72 TSLKELNLRQNLIAKILN-HLSKLKSLEALDLYDNKIEK--IENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELN  146 (414)
T ss_pred             HhHHhhccchhhhhhhhc-ccccccceeeeeccccchhh--cccchhhhhcchheeccccccccc--cchhhccchhhhe
Confidence            344555555565555222 35566677777777777765  333355667777777777777644  3455566677777


Q ss_pred             CCCCCCCCCchhhhcCCCCCCEEEcccCcCCcccc-hhhcCCCCCCEEEccCCcCcc
Q 036216           83 LPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIP-RSMARLCNLRRLYLGGAKLNQ  138 (695)
Q Consensus        83 L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~  138 (695)
                      +++|.++..  ..+..++.|+.+++++|.+...-+ . ...+.+++.+.+++|.+..
T Consensus       147 l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~  200 (414)
T KOG0531|consen  147 LSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE  200 (414)
T ss_pred             eccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc
Confidence            777776633  335556677777777776663322 1 4566666666776666543

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.74  E-value=1.8e-09  Score=113.29  Aligned_cols=173  Identities=31%  Similarity=0.336  Sum_probs=131.7

Q ss_pred             CCCCcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEE
Q 036216            2 LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHL   81 (695)
Q Consensus         2 l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   81 (695)
                      +++++.|++.+|.|..+.. .+..+.+|++|++++|.|+.+   ..+..++.|+.|++++|.|...  ..+..++.|+.+
T Consensus        94 ~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i---~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l  167 (414)
T KOG0531|consen   94 LKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKL---EGLSTLTLLKELNLSGNLISDI--SGLESLKSLKLL  167 (414)
T ss_pred             ccceeeeeccccchhhccc-chhhhhcchheeccccccccc---cchhhccchhhheeccCcchhc--cCCccchhhhcc
Confidence            6789999999999999875 277899999999999999874   3466788899999999999844  567779999999


Q ss_pred             eCCCCCCCCCch-hhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhccccc-ccceEE
Q 036216           82 GLPFNHFSSSVP-KWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSN-GLESLA  159 (695)
Q Consensus        82 ~L~~n~l~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~-~L~~L~  159 (695)
                      ++++|++..+.+ . ...+.+++.+++.+|.+..  ...+..+..+..+++..|.++..-+..      .... .|+.++
T Consensus       168 ~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i~~~~~l~------~~~~~~L~~l~  238 (414)
T KOG0531|consen  168 DLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKISKLEGLN------ELVMLHLRELY  238 (414)
T ss_pred             cCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHHHHhhcccccceeccCcc------cchhHHHHHHh
Confidence            999999996544 2 5788999999999999873  344555566666688888776432210      0000 267788


Q ss_pred             ccCcccccccchhcCCCCCCCEEEccCCCcC
Q 036216          160 LASSSISGHLTDQLGQFKNLDSLDLSNNSIV  190 (695)
Q Consensus       160 L~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~  190 (695)
                      +++|.+.... ..+..+..+..|++..|++.
T Consensus       239 l~~n~i~~~~-~~~~~~~~l~~l~~~~n~~~  268 (414)
T KOG0531|consen  239 LSGNRISRSP-EGLENLKNLPVLDLSSNRIS  268 (414)
T ss_pred             cccCcccccc-ccccccccccccchhhcccc
Confidence            8888776532 44666777888888888765

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.41  E-value=7.7e-09  Score=95.98  Aligned_cols=134  Identities=24%  Similarity=0.255  Sum_probs=90.9

Q ss_pred             CCCCEEEcCCCcCccc-CCccCCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEEcccCc-CCcc-cchhhcCCCCCCE
Q 036216           52 SRLHFLNLGYNNFQGP-IPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNS-LEGR-IPRSMARLCNLRR  128 (695)
Q Consensus        52 ~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~-~~~~~~~l~~L~~  128 (695)
                      +.|++|||++..|+.. ....++.|.+|+.|.+.++++.+.+...+.+-.+|+.|+++.+. ++.. .--.+..++.|+.
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            3588888888887742 33456778888888888888887777788888888888888875 3311 1234678888888


Q ss_pred             EEccCCcCccccchhhhhhhcccccccceEEccCcccc---cccchhcCCCCCCCEEEccCCC
Q 036216          129 LYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSIS---GHLTDQLGQFKNLDSLDLSNNS  188 (695)
Q Consensus       129 L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~---~~~~~~l~~l~~L~~L~L~~n~  188 (695)
                      |+++++.+......+   .......+|+.|+++++.-.   ..+..-...+++|.+|||+.|.
T Consensus       265 LNlsWc~l~~~~Vtv---~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v  324 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTV---AVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSV  324 (419)
T ss_pred             cCchHhhccchhhhH---HHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccc
Confidence            888888776544332   34445555888888876421   1222233467788888887764

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.38  E-value=2e-08  Score=82.21  Aligned_cols=84  Identities=26%  Similarity=0.421  Sum_probs=52.0

Q ss_pred             cEEEcCCccccccCCccccC-CCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEEccc
Q 036216          556 RIIDFSKNLFSGTLPMGLTN-LKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSN  634 (695)
Q Consensus       556 ~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~  634 (695)
                      +..+|++|.+. ..|+.|.. ++.++.|++++|.+. .+|+.++.+++|+.|+++.|.+. ..|..+..|.++..||..+
T Consensus        56 ~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~  132 (177)
T KOG4579|consen   56 TKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPE  132 (177)
T ss_pred             EEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCC
Confidence            45566666665 44444433 346666777777766 56666677777777777777766 5666666666666666666


Q ss_pred             CcCcccCCC
Q 036216          635 NYLTGKIPS  643 (695)
Q Consensus       635 N~l~~~iP~  643 (695)
                      |.+. .||.
T Consensus       133 na~~-eid~  140 (177)
T KOG4579|consen  133 NARA-EIDV  140 (177)
T ss_pred             Cccc-cCcH
Confidence            6554 3443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.32  E-value=1.2e-08  Score=105.93  Aligned_cols=128  Identities=25%  Similarity=0.292  Sum_probs=76.7

Q ss_pred             CCCEEeCCCCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccc
Q 036216           77 SLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLE  156 (695)
Q Consensus        77 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~  156 (695)
                      .|.+.+.++|.+. .+..++.-++.|++|+|++|++...  ..+..+++|++|||++|.+.....      ++.....|.
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~------l~~~gc~L~  235 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQ------LSMVGCKLQ  235 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccc------cchhhhhhe
Confidence            5666666677666 4555666667777777777777633  366677777777777776654321      111222266


Q ss_pred             eEEccCcccccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccce
Q 036216          157 SLALASSSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLT  228 (695)
Q Consensus       157 ~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~  228 (695)
                      .|.+++|.++..  ..+.++.+|+.||+++|-+.+..           ++.  .+..+..|+.|++.+|.+.
T Consensus       236 ~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hs-----------eL~--pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  236 LLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHS-----------ELE--PLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             eeeecccHHHhh--hhHHhhhhhhccchhHhhhhcch-----------hhh--HHHHHHHHHHHhhcCCccc
Confidence            777777766543  23566777777777777665332           111  2444556666666666654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.32  E-value=1.2e-07  Score=88.25  Aligned_cols=42  Identities=21%  Similarity=0.164  Sum_probs=21.0

Q ss_pred             CCCCCCEEEcccCCCccccChHHhhcccccceeecccccccc
Q 036216          261 SQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHG  302 (695)
Q Consensus       261 ~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~  302 (695)
                      .++.+..|+++.++|..--.-..+..+++|..|.++++.+..
T Consensus       222 ~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  222 PFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             CCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence            344444555555555422222334455666666666665543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.30  E-value=9.8e-09  Score=106.46  Aligned_cols=126  Identities=27%  Similarity=0.349  Sum_probs=87.5

Q ss_pred             CcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCC
Q 036216            5 LVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLP   84 (695)
Q Consensus         5 L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~   84 (695)
                      |.+.+++.|.++.++. ++.-++.|+.|||++|+++..   +.+..|++|++|||++|.+.....-....+. |+.|.++
T Consensus       166 L~~a~fsyN~L~~mD~-SLqll~ale~LnLshNk~~~v---~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr  240 (1096)
T KOG1859|consen  166 LATASFSYNRLVLMDE-SLQLLPALESLNLSHNKFTKV---DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR  240 (1096)
T ss_pred             HhhhhcchhhHHhHHH-HHHHHHHhhhhccchhhhhhh---HHHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence            4556677777776654 667777888888888888753   3677888888888888888743323344444 8888888


Q ss_pred             CCCCCCCchhhhcCCCCCCEEEcccCcCCccc-chhhcCCCCCCEEEccCCcCc
Q 036216           85 FNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRI-PRSMARLCNLRRLYLGGAKLN  137 (695)
Q Consensus        85 ~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~  137 (695)
                      +|.++..  ..+.++.+|+.||+++|-+.+.- -.-+..+..|+.|.|.||++-
T Consensus       241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            8887743  45778888888888888766421 123456677788888888763

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.22  E-value=5.3e-08  Score=90.55  Aligned_cols=160  Identities=23%  Similarity=0.206  Sum_probs=115.3

Q ss_pred             CCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCCCCCCC--chhhhcCCCCCCEE
Q 036216           28 TLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSS--VPKWFDRLTHLEHL  105 (695)
Q Consensus        28 ~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L  105 (695)
                      .|++||||+..|+...+-..+..|.+|+.|.|.++++...+...+..-.+|+.|+++.+.--..  .---|.+|+.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            5899999999887654555677899999999999999887778888899999999998743211  11246789999999


Q ss_pred             EcccCcCCcccchhh-c-CCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCcc-cccccchhcCCCCCCCEE
Q 036216          106 SLSYNSLEGRIPRSM-A-RLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSS-ISGHLTDQLGQFKNLDSL  182 (695)
Q Consensus       106 ~Ls~n~l~~~~~~~~-~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~-~~~~~~~~l~~l~~L~~L  182 (695)
                      +++.|.+........ . --++|+.|+++|.+-. .....++.....+++ +.+|+|+.|. ++......|..++.|++|
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrn-l~~sh~~tL~~rcp~-l~~LDLSD~v~l~~~~~~~~~kf~~L~~l  343 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRN-LQKSHLSTLVRRCPN-LVHLDLSDSVMLKNDCFQEFFKFNYLQHL  343 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhh-hhhhHHHHHHHhCCc-eeeeccccccccCchHHHHHHhcchheee
Confidence            999998764332222 1 1257888999886421 111122324445555 9999999875 455556678889999999


Q ss_pred             EccCCCc
Q 036216          183 DLSNNSI  189 (695)
Q Consensus       183 ~L~~n~i  189 (695)
                      .++.|+.
T Consensus       344 SlsRCY~  350 (419)
T KOG2120|consen  344 SLSRCYD  350 (419)
T ss_pred             ehhhhcC
Confidence            9999874

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.22  E-value=1e-06  Score=81.07  Aligned_cols=87  Identities=17%  Similarity=0.197  Sum_probs=41.6

Q ss_pred             CCCCCCEEEcCCCcCcccC----CccCCCCCCCCEEeCCCCCCC---CCc-------hhhhcCCCCCCEEEcccCcCCcc
Q 036216           50 GLSRLHFLNLGYNNFQGPI----PEGLQNLTSLKHLGLPFNHFS---SSV-------PKWFDRLTHLEHLSLSYNSLEGR  115 (695)
Q Consensus        50 ~l~~L~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~L~~n~l~---~~~-------p~~~~~l~~L~~L~Ls~n~l~~~  115 (695)
                      .+..++.++||+|.|...-    ...+.+-++|+..+++.-...   ..+       -.++-+|++|+..+||.|.+...
T Consensus        28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~  107 (388)
T COG5238          28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE  107 (388)
T ss_pred             hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence            4566666777777665432    223344456666655543111   011       12334555555555555555433


Q ss_pred             cch----hhcCCCCCCEEEccCCcC
Q 036216          116 IPR----SMARLCNLRRLYLGGAKL  136 (695)
Q Consensus       116 ~~~----~~~~l~~L~~L~L~~n~l  136 (695)
                      .|.    .+++-+.|.+|.+++|.+
T Consensus       108 ~~e~L~d~is~~t~l~HL~l~NnGl  132 (388)
T COG5238         108 FPEELGDLISSSTDLVHLKLNNNGL  132 (388)
T ss_pred             cchHHHHHHhcCCCceeEEeecCCC
Confidence            332    233444555555555543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.22  E-value=5.4e-08  Score=79.75  Aligned_cols=103  Identities=30%  Similarity=0.429  Sum_probs=58.5

Q ss_pred             EEEcCCCcCCCCCc--cCCCCCCCCCEEECCCCCCCCCCCchhhc-CCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeC
Q 036216            7 ELDLSNCQLHHFPQ--LPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGL   83 (695)
Q Consensus         7 ~L~ls~~~l~~~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L   83 (695)
                      .++|+.|.+-.++.  ..+....+|+..+|++|.+..  +|..|. ..+-+++|++++|.|. .+|..+..++.|+.|++
T Consensus        31 ~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~--fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl  107 (177)
T KOG4579|consen   31 FLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKK--FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNL  107 (177)
T ss_pred             hcccccchhhHHHHHHHHHhCCceEEEEecccchhhh--CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhccc
Confidence            45566665554443  223344455556666666655  444443 3445666666666666 45555666666666666


Q ss_pred             CCCCCCCCchhhhcCCCCCCEEEcccCcCC
Q 036216           84 PFNHFSSSVPKWFDRLTHLEHLSLSYNSLE  113 (695)
Q Consensus        84 ~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~  113 (695)
                      +.|.+. ..|..|..+.+|-.|+..+|.+.
T Consensus       108 ~~N~l~-~~p~vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen  108 RFNPLN-AEPRVIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             ccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence            666665 45555555666666666666555

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.17  E-value=8.3e-07  Score=81.64  Aligned_cols=113  Identities=22%  Similarity=0.256  Sum_probs=70.9

Q ss_pred             CCCCCCEEECCCCCCCCCCCchh----hcCCCCCCEEEcCCCcCc---cc-------CCccCCCCCCCCEEeCCCCCCCC
Q 036216           25 NFSTLTTLDLSHNQFDNSFVPAW----VFGLSRLHFLNLGYNNFQ---GP-------IPEGLQNLTSLKHLGLPFNHFSS   90 (695)
Q Consensus        25 ~l~~L~~L~Ls~n~i~~~~~~~~----~~~l~~L~~L~Ls~n~i~---~~-------~~~~~~~l~~L~~L~L~~n~l~~   90 (695)
                      -+..++.+|||+|.|... -..+    +.+-.+|++.+++.-...   ..       +-.++-+|++|+..+||.|.+..
T Consensus        28 ~~d~~~evdLSGNtigtE-A~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~  106 (388)
T COG5238          28 MMDELVEVDLSGNTIGTE-AMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS  106 (388)
T ss_pred             hhcceeEEeccCCcccHH-HHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence            356777888888887653 2222    335567777777654221   11       22355678888888888888876


Q ss_pred             Cchh----hhcCCCCCCEEEcccCcCCcccchhh-------------cCCCCCCEEEccCCcCcc
Q 036216           91 SVPK----WFDRLTHLEHLSLSYNSLEGRIPRSM-------------ARLCNLRRLYLGGAKLNQ  138 (695)
Q Consensus        91 ~~p~----~~~~l~~L~~L~Ls~n~l~~~~~~~~-------------~~l~~L~~L~L~~n~l~~  138 (695)
                      ..|.    .++.-+.|.+|.+++|.+.-+-...+             .+-+.|++.....|++..
T Consensus       107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen  171 (388)
T COG5238         107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN  171 (388)
T ss_pred             ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc
Confidence            6554    34566788888888887652222222             234667777777777654

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.04  E-value=2.1e-05  Score=79.23  Aligned_cols=55  Identities=16%  Similarity=0.145  Sum_probs=27.9

Q ss_pred             CCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCC
Q 036216          382 SYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGEN  442 (695)
Q Consensus       382 ~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  442 (695)
                      .+.+++.|++++|.++ .+|.   -.++|+.|.+++|.-...+|..+  .++|+.|++++|
T Consensus        50 ~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         50 EARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC  104 (426)
T ss_pred             HhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence            3566666677666555 3441   12356666666554333444332  234555555554

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.95  E-value=6.5e-06  Score=54.74  Aligned_cols=36  Identities=28%  Similarity=0.534  Sum_probs=16.1

Q ss_pred             CCCEEeccCCcccccCCccccCcCCCCEEECCCCccc
Q 036216          578 AVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFT  614 (695)
Q Consensus       578 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~  614 (695)
                      +|++|++++|+++ .+|..+++|++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            3444555555444 33333444555555555555444

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.90  E-value=4.1e-06  Score=78.28  Aligned_cols=39  Identities=23%  Similarity=0.246  Sum_probs=16.9

Q ss_pred             hhCCCCCCEEEcccccceeecCCCCCCCCCccEEEccCC
Q 036216          211 FANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSC  249 (695)
Q Consensus       211 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~  249 (695)
                      +.++|.|+.|+++.|.+...+...-.+..+|+.|-+.+.
T Consensus        93 le~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT  131 (418)
T KOG2982|consen   93 LEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGT  131 (418)
T ss_pred             HhcCccceEeeccCCcCCCccccCcccccceEEEEEcCC
Confidence            344555555555555444332222233344444444443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.90  E-value=1.3e-05  Score=53.30  Aligned_cols=17  Identities=41%  Similarity=0.536  Sum_probs=6.5

Q ss_pred             CCCCCCCCEEeCCCCCC
Q 036216           72 LQNLTSLKHLGLPFNHF   88 (695)
Q Consensus        72 ~~~l~~L~~L~L~~n~l   88 (695)
                      +++|++|++|++++|++
T Consensus        20 l~~l~~L~~L~l~~N~i   36 (44)
T PF12799_consen   20 LSNLPNLETLNLSNNPI   36 (44)
T ss_dssp             GTTCTTSSEEEETSSCC
T ss_pred             HhCCCCCCEEEecCCCC
Confidence            33333333333333333

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.88  E-value=2.3e-05  Score=69.39  Aligned_cols=125  Identities=26%  Similarity=0.230  Sum_probs=76.9

Q ss_pred             EEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCC
Q 036216            7 ELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFN   86 (695)
Q Consensus         7 ~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n   86 (695)
                      .++|.+..+..+.. .=.-......+||++|.+..  + +.|..++.|.+|.|++|+|+.+.|.--..+++|+.|.+.+|
T Consensus        23 e~~LR~lkip~ien-lg~~~d~~d~iDLtdNdl~~--l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN   98 (233)
T KOG1644|consen   23 ELDLRGLKIPVIEN-LGATLDQFDAIDLTDNDLRK--L-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN   98 (233)
T ss_pred             ccccccccccchhh-ccccccccceecccccchhh--c-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence            45555555444433 00112355677888887764  2 33557777888888888887666665566777888888887


Q ss_pred             CCCCCc-hhhhcCCCCCCEEEcccCcCCccc---chhhcCCCCCCEEEccCCc
Q 036216           87 HFSSSV-PKWFDRLTHLEHLSLSYNSLEGRI---PRSMARLCNLRRLYLGGAK  135 (695)
Q Consensus        87 ~l~~~~-p~~~~~l~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~L~~n~  135 (695)
                      .+.... -..+..|++|++|.+-+|.++..-   --.+.++++|++||+.+-.
T Consensus        99 si~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen   99 SIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             chhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            765310 123566778888888777766321   1235677777777776543

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.86  E-value=7.9e-05  Score=75.22  Aligned_cols=77  Identities=10%  Similarity=0.155  Sum_probs=49.7

Q ss_pred             ccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCCC
Q 036216          404 LGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFL  483 (695)
Q Consensus       404 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L  483 (695)
                      +..+.+++.|++++|.++ .+|.   -..+|++|.+++|.-...+|..+   .++|+.|.+++|.....+|.      +|
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~------sL  114 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLPE------SV  114 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccccccc------cc
Confidence            445688888999988777 4552   23468888888875556667543   35778888887733223443      46


Q ss_pred             CEEeCCCCcC
Q 036216          484 QILDLADNNL  493 (695)
Q Consensus       484 ~~L~L~~n~l  493 (695)
                      +.|++.++..
T Consensus       115 e~L~L~~n~~  124 (426)
T PRK15386        115 RSLEIKGSAT  124 (426)
T ss_pred             ceEEeCCCCC
Confidence            6666665543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.85  E-value=1.4e-05  Score=87.80  Aligned_cols=138  Identities=22%  Similarity=0.226  Sum_probs=69.9

Q ss_pred             CCCEEECCCCCCCCCCCchhhc-CCCCCCEEEcCCCcCccc-CCccCCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEE
Q 036216           28 TLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLGYNNFQGP-IPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHL  105 (695)
Q Consensus        28 ~L~~L~Ls~n~i~~~~~~~~~~-~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  105 (695)
                      +|++||+++.......-|..++ .+|+|++|.+++-.+... .-....++++|+.||+|+..++..  .+++++++|++|
T Consensus       123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L  200 (699)
T KOG3665|consen  123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL  200 (699)
T ss_pred             hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence            5566666654432211222332 456666666665544321 122334566666666666666533  456666666666


Q ss_pred             EcccCcCCc-ccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCcccccccchhcCCCCCCCEEEc
Q 036216          106 SLSYNSLEG-RIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLDL  184 (695)
Q Consensus       106 ~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L  184 (695)
                      .+.+=.+.. ..-..+.+|++|+.||+|........ .....+                      -+.-..+|+|+.||.
T Consensus       201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~-~ii~qY----------------------lec~~~LpeLrfLDc  257 (699)
T KOG3665|consen  201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDT-KIIEQY----------------------LECGMVLPELRFLDC  257 (699)
T ss_pred             hccCCCCCchhhHHHHhcccCCCeeeccccccccch-HHHHHH----------------------HHhcccCccccEEec
Confidence            665544442 12234555666666666654433221 111111                      112234778888888


Q ss_pred             cCCCcC
Q 036216          185 SNNSIV  190 (695)
Q Consensus       185 ~~n~i~  190 (695)
                      |+..+.
T Consensus       258 SgTdi~  263 (699)
T KOG3665|consen  258 SGTDIN  263 (699)
T ss_pred             CCcchh
Confidence            877664

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.74  E-value=1.5e-05  Score=87.64  Aligned_cols=136  Identities=25%  Similarity=0.289  Sum_probs=99.3

Q ss_pred             CCCcEEEcCCCcCCC--CCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCE
Q 036216            3 PSLVELDLSNCQLHH--FPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKH   80 (695)
Q Consensus         3 ~~L~~L~ls~~~l~~--~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   80 (695)
                      .+|++||+++...-.  -+...-.-++.|+.|.+++-.+....+.....++++|+.||+|+++++..  ..++++++|++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            368899998865332  22233456899999999998876532344455899999999999999855  78899999999


Q ss_pred             EeCCCCCCCC-CchhhhcCCCCCCEEEcccCcCCcc------cchhhcCCCCCCEEEccCCcCcccc
Q 036216           81 LGLPFNHFSS-SVPKWFDRLTHLEHLSLSYNSLEGR------IPRSMARLCNLRRLYLGGAKLNQEI  140 (695)
Q Consensus        81 L~L~~n~l~~-~~p~~~~~l~~L~~L~Ls~n~l~~~------~~~~~~~l~~L~~L~L~~n~l~~~~  140 (695)
                      |.+.+=.+.. ..-..+.+|++|++||+|.......      .-+.-..+++||.||.+++.+....
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~  266 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI  266 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence            9998877764 2224577899999999998764421      1123345889999999988776543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.73  E-value=5.5e-05  Score=67.00  Aligned_cols=106  Identities=22%  Similarity=0.188  Sum_probs=85.2

Q ss_pred             CCcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccC-CccCCCCCCCCEEe
Q 036216            4 SLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPI-PEGLQNLTSLKHLG   82 (695)
Q Consensus         4 ~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~   82 (695)
                      ....+||++|.+..++.  |..++.|.+|.+.+|.|+.+ .|.--..+++|++|.|++|.|.... -+-+..+++|++|.
T Consensus        43 ~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I-~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRI-DPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             ccceecccccchhhccc--CCCccccceEEecCCcceee-ccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence            45679999999998875  88999999999999999986 5655557889999999999987431 24467899999999


Q ss_pred             CCCCCCCCCch---hhhcCCCCCCEEEcccCcC
Q 036216           83 LPFNHFSSSVP---KWFDRLTHLEHLSLSYNSL  112 (695)
Q Consensus        83 L~~n~l~~~~p---~~~~~l~~L~~L~Ls~n~l  112 (695)
                      +-+|.++..--   -.+..+++|++||...-..
T Consensus       120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~  152 (233)
T KOG1644|consen  120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR  152 (233)
T ss_pred             ecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence            99999874211   2467899999999987543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.66  E-value=0.0001  Score=63.60  Aligned_cols=110  Identities=16%  Similarity=0.198  Sum_probs=49.2

Q ss_pred             CCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCCCCCCCchhhhc
Q 036216           18 FPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFD   97 (695)
Q Consensus        18 ~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~   97 (695)
                      ++..+|.++++|+.+.+.. .+..+ -...|.++++|+.+.+..+ +......+|.++++|+.+.+.. .+.......|.
T Consensus         3 i~~~~F~~~~~l~~i~~~~-~~~~I-~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~   78 (129)
T PF13306_consen    3 IGNNAFYNCSNLESITFPN-TIKKI-GENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFS   78 (129)
T ss_dssp             E-TTTTTT-TT--EEEETS-T--EE--TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTT
T ss_pred             ECHHHHhCCCCCCEEEECC-CeeEe-Chhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccc
Confidence            4445566666666666653 34332 3334555656666666554 4444455566666666666654 33323344555


Q ss_pred             CCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccC
Q 036216           98 RLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGG  133 (695)
Q Consensus        98 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  133 (695)
                      .+++|+.+++..+ +.......|.+. +|+.+.+..
T Consensus        79 ~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   79 NCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             T-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred             ccccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence            5666666666554 443344455555 666666554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.41  E-value=0.00039  Score=59.84  Aligned_cols=81  Identities=17%  Similarity=0.265  Sum_probs=33.5

Q ss_pred             hccccceeecccccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEE
Q 036216          358 ETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTL  437 (695)
Q Consensus       358 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  437 (695)
                      ++.+|+.+.+.. .+......+|..+++|+.+.+.++ +.......|..+++++.+.+.+ .+.......|..+++|+.+
T Consensus        10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i   86 (129)
T PF13306_consen   10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNI   86 (129)
T ss_dssp             T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEE
T ss_pred             CCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccc
Confidence            445555555543 333334445555555666665553 4333444555555555555544 3332334445555555555


Q ss_pred             EcCC
Q 036216          438 DVGE  441 (695)
Q Consensus       438 ~l~~  441 (695)
                      ++..
T Consensus        87 ~~~~   90 (129)
T PF13306_consen   87 DIPS   90 (129)
T ss_dssp             EETT
T ss_pred             ccCc
Confidence            5544

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.37  E-value=1.6e-05  Score=78.05  Aligned_cols=36  Identities=22%  Similarity=0.246  Sum_probs=16.5

Q ss_pred             CCCCcEEECcCCcce-eeCCccccCCCCCcEEEcCCC
Q 036216          407 LSSLVSLHLRKNRLS-GTIPILLKNCTSLVTLDVGEN  442 (695)
Q Consensus       407 l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n  442 (695)
                      +..|+.+.++++... +..-..+..+++|+.+++-++
T Consensus       400 ~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~  436 (483)
T KOG4341|consen  400 LEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC  436 (483)
T ss_pred             ccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence            345555555555532 222233444555555555444

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.25  E-value=0.00018  Score=66.72  Aligned_cols=107  Identities=21%  Similarity=0.161  Sum_probs=71.9

Q ss_pred             CCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCC--cCcccCCccCCCCCCCCEEeCCCCCCCCCchhh---h
Q 036216           22 PVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYN--NFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKW---F   96 (695)
Q Consensus        22 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n--~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~---~   96 (695)
                      ....+..|+.|.+.+..++.  + ..+-.+++|++|.++.|  ++.+.++-....+++|++|++++|++..  +..   .
T Consensus        38 l~d~~~~le~ls~~n~gltt--~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl  112 (260)
T KOG2739|consen   38 LTDEFVELELLSVINVGLTT--L-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPL  112 (260)
T ss_pred             ccccccchhhhhhhccceee--c-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchh
Confidence            34455667777777777654  2 22447888999999998  6665555555667999999999998873  222   4


Q ss_pred             cCCCCCCEEEcccCcCCccc---chhhcCCCCCCEEEccC
Q 036216           97 DRLTHLEHLSLSYNSLEGRI---PRSMARLCNLRRLYLGG  133 (695)
Q Consensus        97 ~~l~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~L~~  133 (695)
                      ..+.+|..|++..|..+...   -..|.-+++|++||-..
T Consensus       113 ~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d  152 (260)
T KOG2739|consen  113 KELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD  152 (260)
T ss_pred             hhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence            55677888898888766421   23466677888876443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.07  E-value=0.00035  Score=64.92  Aligned_cols=87  Identities=23%  Similarity=0.264  Sum_probs=57.3

Q ss_pred             CCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCC--CCCCCchhhhcCCCCCCEEEcccCcCCcc-cchhhcCCCCC
Q 036216           50 GLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFN--HFSSSVPKWFDRLTHLEHLSLSYNSLEGR-IPRSMARLCNL  126 (695)
Q Consensus        50 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n--~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L  126 (695)
                      .+..|+.|.+.+..++..  ..|-.+++|++|.++.|  ++.+-++.....+++|++|++++|+|+.. .-..+..+.+|
T Consensus        41 ~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL  118 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL  118 (260)
T ss_pred             cccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence            556677777777776633  45667788888888888  66555555556668888888888887721 11234455666


Q ss_pred             CEEEccCCcCcc
Q 036216          127 RRLYLGGAKLNQ  138 (695)
Q Consensus       127 ~~L~L~~n~l~~  138 (695)
                      ..|++.+|.-++
T Consensus       119 ~~Ldl~n~~~~~  130 (260)
T KOG2739|consen  119 KSLDLFNCSVTN  130 (260)
T ss_pred             hhhhcccCCccc
Confidence            677777765543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=96.94  E-value=7.5e-05  Score=73.53  Aligned_cols=281  Identities=16%  Similarity=0.068  Sum_probs=138.9

Q ss_pred             CCCEEECCCCCCCC-CCCchhhcCCCCCCEEEcCCCc-CcccCCccC-CCCCCCCEEeCCCCC-CCCCchh-hhcCCCCC
Q 036216           28 TLTTLDLSHNQFDN-SFVPAWVFGLSRLHFLNLGYNN-FQGPIPEGL-QNLTSLKHLGLPFNH-FSSSVPK-WFDRLTHL  102 (695)
Q Consensus        28 ~L~~L~Ls~n~i~~-~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~p~-~~~~l~~L  102 (695)
                      .|+.|.+.++.-.. ..+..+...+++++.|++.+|. ++...-..+ ..+++|++|++..|. ++...-. --..+++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            46666666664221 1122333467777777776665 221111111 356777777777643 3322112 22456777


Q ss_pred             CEEEcccCc-CCcccc-hhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCcccc-ccc-chhcCCCCC
Q 036216          103 EHLSLSYNS-LEGRIP-RSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSIS-GHL-TDQLGQFKN  178 (695)
Q Consensus       103 ~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~-~~~-~~~l~~l~~  178 (695)
                      .+|+++.|. |++.-. .-+.++..++.+.+.|+.  +.....+...-+.... +.++++..|... ... ...-..+..
T Consensus       219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~--e~~le~l~~~~~~~~~-i~~lnl~~c~~lTD~~~~~i~~~c~~  295 (483)
T KOG4341|consen  219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCL--ELELEALLKAAAYCLE-ILKLNLQHCNQLTDEDLWLIACGCHA  295 (483)
T ss_pred             HHhhhccCchhhcCcchHHhccchhhhhhhhcccc--cccHHHHHHHhccChH-hhccchhhhccccchHHHHHhhhhhH
Confidence            777777764 333111 123344455555555431  1111211111111122 555555555322 111 111234567


Q ss_pred             CCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEccccc-ceeecCCCC-CCCCCccEEEccCCCCCC--C
Q 036216          179 LDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANK-LTLKVKRDW-IPPFQLIELGLRSCDVGS--R  254 (695)
Q Consensus       179 L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~-~~~~~L~~L~l~~~~~~~--~  254 (695)
                      |+.|+.+++.-.+.            ..-..--.+..+|+.+-+.+++ ++......+ .+.+.|+.+++..|....  .
T Consensus       296 lq~l~~s~~t~~~d------------~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~t  363 (483)
T KOG4341|consen  296 LQVLCYSSCTDITD------------EVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGT  363 (483)
T ss_pred             hhhhcccCCCCCch------------HHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhh
Confidence            77777776543211            1111123456777777777765 222222222 245677777777775432  2


Q ss_pred             CCccccCCCCCCEEEcccCCCccccCh----HHhhcccccceeeccccccccc--ccCccccCccceEecccccc
Q 036216          255 FPLWLYSQKDLQFLDLFNSGISGTFPN----RLLKSASQLYLLDLGHNQIHGE--LTNLTKASQLSYLSLIANNF  323 (695)
Q Consensus       255 ~~~~l~~~~~L~~L~l~~~~i~~~~~~----~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~~~L~~L~l~~n~~  323 (695)
                      +...-.+++.|+.+.++++.....-..    ........++.+.++++.....  ...+..++.|+.+++.+++-
T Consensus       364 L~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~  438 (483)
T KOG4341|consen  364 LASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD  438 (483)
T ss_pred             HhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence            223335677888888887753211111    1113356788888888876532  23455667888888877754

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.56  E-value=0.00013  Score=67.91  Aligned_cols=86  Identities=27%  Similarity=0.263  Sum_probs=57.9

Q ss_pred             CCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEEcccCcCCccc-chhhcCCCCCCEE
Q 036216           51 LSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRI-PRSMARLCNLRRL  129 (695)
Q Consensus        51 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L  129 (695)
                      +.+.+.|++-+|.+..+  .....++.|++|.|+-|+|++.-|  +..|++|+.|+|..|.|.... -..+.++++|+.|
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            45566777777776643  345567777777777777775533  777778888888877776422 2345677788888


Q ss_pred             EccCCcCcccc
Q 036216          130 YLGGAKLNQEI  140 (695)
Q Consensus       130 ~L~~n~l~~~~  140 (695)
                      -|..|...+..
T Consensus        94 WL~ENPCc~~a  104 (388)
T KOG2123|consen   94 WLDENPCCGEA  104 (388)
T ss_pred             hhccCCccccc
Confidence            87777765543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.55  E-value=9e-05  Score=68.88  Aligned_cols=63  Identities=24%  Similarity=0.246  Sum_probs=25.8

Q ss_pred             CCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCccc
Q 036216          406 SLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFD  470 (695)
Q Consensus       406 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~  470 (695)
                      .++.|+.|.|+-|+|+...|  +..|+.|++|+|..|.|...---....++|+|+.|+|..|.-.
T Consensus        39 kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc  101 (388)
T KOG2123|consen   39 KMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCC  101 (388)
T ss_pred             hcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcc
Confidence            34444444444444442222  3444444444444444421111111224455555555544433

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.71  E-value=0.0044  Score=34.03  Aligned_cols=11  Identities=45%  Similarity=0.416  Sum_probs=4.5

Q ss_pred             CEEeccCCccc
Q 036216          580 QSLNLSYNIFT  590 (695)
Q Consensus       580 ~~L~Ls~n~l~  590 (695)
                      ++|||++|+++
T Consensus         3 ~~Ldls~n~l~   13 (22)
T PF00560_consen    3 EYLDLSGNNLT   13 (22)
T ss_dssp             SEEEETSSEES
T ss_pred             cEEECCCCcCE
Confidence            34444444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.63  E-value=0.0051  Score=33.79  Aligned_cols=21  Identities=48%  Similarity=0.683  Sum_probs=13.7

Q ss_pred             CCCEEECCCCcccccCCcCCcC
Q 036216          602 SLESIDFSVNKFTGEIPQSMSS  623 (695)
Q Consensus       602 ~L~~L~Ls~n~l~~~~p~~l~~  623 (695)
                      +|+.||+++|+++ .+|.+|++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            3667777777777 56665554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.35  E-value=0.00031  Score=73.94  Aligned_cols=191  Identities=26%  Similarity=0.266  Sum_probs=93.7

Q ss_pred             CCEEECCCCCCCCCCC---chhhcCCCCCCEEEcCCCcCcccC----CccCCCC-CCCCEEeCCCCCCCCC----chhhh
Q 036216           29 LTTLDLSHNQFDNSFV---PAWVFGLSRLHFLNLGYNNFQGPI----PEGLQNL-TSLKHLGLPFNHFSSS----VPKWF   96 (695)
Q Consensus        29 L~~L~Ls~n~i~~~~~---~~~~~~l~~L~~L~Ls~n~i~~~~----~~~~~~l-~~L~~L~L~~n~l~~~----~p~~~   96 (695)
                      +..|.|.+|.+.....   -.++.....|..|++++|.+....    -..+... ..|++|++..|.++..    ++..+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            5555555555544211   112234555566666666555221    1122222 4455566666655532    33444


Q ss_pred             cCCCCCCEEEcccCcCCc----ccchh----hcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCcccccc
Q 036216           97 DRLTHLEHLSLSYNSLEG----RIPRS----MARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGH  168 (695)
Q Consensus        97 ~~l~~L~~L~Ls~n~l~~----~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~  168 (695)
                      .....++.++++.|.+..    .++..    +....++++|.+.++.++...-......+......++.+++..|.+.+.
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            455566666666665531    11222    2235566666666666554333333333333333355566666665533


Q ss_pred             c----chhcCCC-CCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEccccccee
Q 036216          169 L----TDQLGQF-KNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTL  229 (695)
Q Consensus       169 ~----~~~l~~l-~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~  229 (695)
                      .    ...+..+ ..+++++++.|.|+....-         .+.. .+..++.++.+.+..|.+..
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~---------~L~~-~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVR---------DLAE-VLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcCCccccchH---------HHHH-HHhhhHHHHHhhcccCcccc
Confidence            1    2233344 5567777777776533211         1222 45556677777777776654

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.13  E-value=0.0052  Score=66.62  Aligned_cols=14  Identities=36%  Similarity=0.434  Sum_probs=7.6

Q ss_pred             CCCCCCEEEccCCC
Q 036216          175 QFKNLDSLDLSNNS  188 (695)
Q Consensus       175 ~l~~L~~L~L~~n~  188 (695)
                      .++.|++|+++++.
T Consensus       293 ~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  293 RCPSLRELDLSGCH  306 (482)
T ss_pred             hcCcccEEeeecCc
Confidence            34555555555554

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.07  E-value=0.0018  Score=70.22  Aligned_cols=111  Identities=23%  Similarity=0.085  Sum_probs=48.1

Q ss_pred             ccccceeecccccccCC--CCccccCCCCCCEEeCCCC-cccccC----CccccCCCCCcEEECcCCc-ceeeCCcccc-
Q 036216          359 TMKLKFLFLDRNILQGK--LPDCWMSYQNLMALDLSNN-KFTGNL----PTSLGSLSSLVSLHLRKNR-LSGTIPILLK-  429 (695)
Q Consensus       359 ~~~L~~L~l~~n~l~~~--~~~~~~~~~~L~~L~ls~n-~~~~~~----~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~-  429 (695)
                      ++.|+.+.+..+.-...  .-.....++.|++|+++++ ......    ......+++|+.|+++.+. +++..-..+. 
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            44555555554432211  1122334556666666542 111001    1122334555666665555 3322212222 


Q ss_pred             CCCCCcEEEcCCCc-ccccCChhhhhcCCCCcEEEcCCCcc
Q 036216          430 NCTSLVTLDVGENE-VFGNIPSWFGERFSRMVLLILRSNNF  469 (695)
Q Consensus       430 ~l~~L~~L~l~~n~-~~~~~~~~~~~~l~~L~~L~l~~n~~  469 (695)
                      .|++|+.|.+.+|. ++...-..+...+++|+.|++++|..
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            25556666555554 33333333444555555555555543

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=95.04  E-value=0.00034  Score=63.41  Aligned_cols=84  Identities=18%  Similarity=0.198  Sum_probs=43.8

Q ss_pred             CCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEE
Q 036216           50 GLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRL  129 (695)
Q Consensus        50 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  129 (695)
                      .....+.||++.|++- -+-..|+-++.|..|+++.|.+. ..|..++.+..++++++..|..+ ..|.++++.++++++
T Consensus        40 ~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~  116 (326)
T KOG0473|consen   40 SFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN  116 (326)
T ss_pred             ccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence            3444444555444443 22334444455555555555555 45555555555555555555554 455556666666666


Q ss_pred             EccCCcC
Q 036216          130 YLGGAKL  136 (695)
Q Consensus       130 ~L~~n~l  136 (695)
                      ++.++.+
T Consensus       117 e~k~~~~  123 (326)
T KOG0473|consen  117 EQKKTEF  123 (326)
T ss_pred             hhccCcc
Confidence            6555553

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.11  E-value=0.0012  Score=69.52  Aligned_cols=190  Identities=23%  Similarity=0.206  Sum_probs=125.0

Q ss_pred             CCEEEcCCCcCccc----CCccCCCCCCCCEEeCCCCCCCCCchh----hhcCC-CCCCEEEcccCcCCc----ccchhh
Q 036216           54 LHFLNLGYNNFQGP----IPEGLQNLTSLKHLGLPFNHFSSSVPK----WFDRL-THLEHLSLSYNSLEG----RIPRSM  120 (695)
Q Consensus        54 L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~~~~p~----~~~~l-~~L~~L~Ls~n~l~~----~~~~~~  120 (695)
                      +..|.|.+|.+...    +..++.....|..|++++|.+......    .+... ..|++|++..|.++.    .+.+.+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            78888999988753    335667788999999999988743222    22222 457778888888774    345667


Q ss_pred             cCCCCCCEEEccCCcCccccchhhhhhhcc---cccccceEEccCccccccc----chhcCCCCC-CCEEEccCCCcCCC
Q 036216          121 ARLCNLRRLYLGGAKLNQEISEILEIFSGC---VSNGLESLALASSSISGHL----TDQLGQFKN-LDSLDLSNNSIVGP  192 (695)
Q Consensus       121 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~---~~~~L~~L~L~~n~~~~~~----~~~l~~l~~-L~~L~L~~n~i~~~  192 (695)
                      .....++.++++.|.+...........+..   ...++++|.+++|.++...    ...+...+. +..|++..|.+.+.
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            778889999999998854333333333333   3445889999998876332    334555665 67788888887422


Q ss_pred             ceEEeeccccccccChhhhhCC-CCCCEEEcccccceeecCC----CCCCCCCccEEEccCCCCCC
Q 036216          193 RVLQLYLNKLHGTLSEIHFANL-TKLSVFLVGANKLTLKVKR----DWIPPFQLIELGLRSCDVGS  253 (695)
Q Consensus       193 ~~~~l~~~~~~~~l~~~~~~~l-~~L~~L~l~~n~l~~~~~~----~~~~~~~L~~L~l~~~~~~~  253 (695)
                      .         ...+.+ .+..+ ..++.+++..|.+......    .+..+.+++++.+..+.+..
T Consensus       249 g---------~~~L~~-~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  249 G---------VEKLLP-CLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             H---------HHHHHH-HhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            0         001111 34455 6778899999988765443    44566788999998887654

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.60  E-value=0.0017  Score=59.04  Aligned_cols=96  Identities=24%  Similarity=0.251  Sum_probs=83.1

Q ss_pred             cCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCCCCCCCch
Q 036216           14 QLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVP   93 (695)
Q Consensus        14 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~p   93 (695)
                      .+..+|-..+..+...+.||++.|++..  +..-|+-++.|..|+++.|++. ..|..+..+..++++++..|..+ ..|
T Consensus        29 ~~s~~~v~ei~~~kr~tvld~~s~r~vn--~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p  104 (326)
T KOG0473|consen   29 ELSEIPVREIASFKRVTVLDLSSNRLVN--LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQP  104 (326)
T ss_pred             HhcccchhhhhccceeeeehhhhhHHHh--hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCC
Confidence            4566776778888999999999999876  5566777888999999999998 78899999999999999999887 789


Q ss_pred             hhhcCCCCCCEEEcccCcCC
Q 036216           94 KWFDRLTHLEHLSLSYNSLE  113 (695)
Q Consensus        94 ~~~~~l~~L~~L~Ls~n~l~  113 (695)
                      .+++..++++++++..+.+.
T Consensus       105 ~s~~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  105 KSQKKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             ccccccCCcchhhhccCcch
Confidence            99999999999999998755

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.51  E-value=0.046  Score=27.72  Aligned_cols=15  Identities=47%  Similarity=0.594  Sum_probs=6.1

Q ss_pred             CCcEEEcCCCcCCCC
Q 036216            4 SLVELDLSNCQLHHF   18 (695)
Q Consensus         4 ~L~~L~ls~~~l~~~   18 (695)
                      +|+.|++++|+++.+
T Consensus         2 ~L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSL   16 (17)
T ss_dssp             T-SEEEETSS--SSE
T ss_pred             ccCEEECCCCCCCCC
Confidence            455555555555443

...

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.16  E-value=0.055  Score=27.44  Aligned_cols=13  Identities=38%  Similarity=0.549  Sum_probs=4.4

Q ss_pred             CCCEEeccCCccc
Q 036216          578 AVQSLNLSYNIFT  590 (695)
Q Consensus       578 ~L~~L~Ls~n~l~  590 (695)
                      +|++|+|++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            3444444444433

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.83  E-value=0.087  Score=30.26  Aligned_cols=23  Identities=52%  Similarity=0.674  Sum_probs=13.6

Q ss_pred             CCCCcEEEcCCCcCCCCCccCCC
Q 036216            2 LPSLVELDLSNCQLHHFPQLPVA   24 (695)
Q Consensus         2 l~~L~~L~ls~~~l~~~~~~~~~   24 (695)
                      +++|++|+|++|.++.+|..+|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            35566666666666666655543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.83  E-value=0.087  Score=30.26  Aligned_cols=23  Identities=52%  Similarity=0.674  Sum_probs=13.6

Q ss_pred             CCCCcEEEcCCCcCCCCCccCCC
Q 036216            2 LPSLVELDLSNCQLHHFPQLPVA   24 (695)
Q Consensus         2 l~~L~~L~ls~~~l~~~~~~~~~   24 (695)
                      +++|++|+|++|.++.+|..+|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            35566666666666666655543

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=89.82  E-value=0.36  Score=27.62  Aligned_cols=14  Identities=36%  Similarity=0.541  Sum_probs=6.8

Q ss_pred             CCCCEEeCCCCCCC
Q 036216           76 TSLKHLGLPFNHFS   89 (695)
Q Consensus        76 ~~L~~L~L~~n~l~   89 (695)
                      ++|++|+|++|+++
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34445555555444

>smart00370 LRR Leucine-rich repeats, outliers

Probab=89.82  E-value=0.36  Score=27.62  Aligned_cols=14  Identities=36%  Similarity=0.541  Sum_probs=6.8

Q ss_pred             CCCCEEeCCCCCCC
Q 036216           76 TSLKHLGLPFNHFS   89 (695)
Q Consensus        76 ~~L~~L~L~~n~l~   89 (695)
                      ++|++|+|++|+++
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34445555555444

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=85.98  E-value=0.18  Score=28.26  Aligned_cols=13  Identities=38%  Similarity=0.542  Sum_probs=5.3

Q ss_pred             CCCEEeccCCccc
Q 036216          578 AVQSLNLSYNIFT  590 (695)
Q Consensus       578 ~L~~L~Ls~n~l~  590 (695)
                      +|++|+|++|+++
T Consensus         3 ~L~~L~l~~n~i~   15 (24)
T PF13516_consen    3 NLETLDLSNNQIT   15 (24)
T ss_dssp             T-SEEE-TSSBEH
T ss_pred             CCCEEEccCCcCC
Confidence            4444555554444

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.76  E-value=0.11  Score=46.82  Aligned_cols=35  Identities=26%  Similarity=0.256  Sum_probs=19.5

Q ss_pred             CCCEEeCCCCcccccCCccccCCCCCcEEECcCCc
Q 036216          385 NLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNR  419 (695)
Q Consensus       385 ~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~  419 (695)
                      .++.+|-+++.|..+.-+.+.+++.++.|.+.+|+
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck  136 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK  136 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence            45556666666655444455555555555555554

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.62  E-value=0.18  Score=45.45  Aligned_cols=84  Identities=21%  Similarity=0.190  Sum_probs=43.9

Q ss_pred             CCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCc-ccccccchhcCCCCC
Q 036216          100 THLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASS-SISGHLTDQLGQFKN  178 (695)
Q Consensus       100 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n-~~~~~~~~~l~~l~~  178 (695)
                      ..++.+|-+++.|..+--+.+.+++.++.|.+.++.--   ..+--..++....+|+.|++++| +|+...-..+..+++
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~---dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lkn  177 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYF---DDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKN  177 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheeccccch---hhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhh
Confidence            34555666666555444444555555555555544221   11111123334444666666655 355555566677777


Q ss_pred             CCEEEccC
Q 036216          179 LDSLDLSN  186 (695)
Q Consensus       179 L~~L~L~~  186 (695)
                      |+.|.+.+
T Consensus       178 Lr~L~l~~  185 (221)
T KOG3864|consen  178 LRRLHLYD  185 (221)
T ss_pred             hHHHHhcC
Confidence            77776654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	695
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-45
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-45
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		8e-17
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		4e-07
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		2e-06
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		2e-06
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		7e-06
2o6r_A	177	Structural Diversity Of The Hagfish Variable Lympho		9e-06
3rg1_A	612	Crystal Structure Of The Rp105MD-1 Complex Length =		2e-05
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		1e-04
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		3e-04
3e6j_A	229	Crystal Structure Of Variable Lymphocyte Receptor (		5e-04

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  181 bits (458), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 206/734 (28%), Positives = 293/734 (39%), Gaps = 166/734 (22%)
Query: 27  STLTTLDLSHNQFDNSFVPAWVFG-LSRLHFLNLGYN--NFQGPIPEGLQNLTSLKHLGL 83
           ++LT+LDLS N            G  S L FLN+  N  +F G +  GL+ L SL+ L L
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK-LNSLEVLDL 158
Query: 84  PFNHFS-SSVPKWF--DRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEI 140
             N  S ++V  W   D    L+HL++S N + G +   ++R  NL  L +     +  I
Sbjct: 159 SANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGI 216
Query: 141 SEILEIFSGCVXXXXXXXXXXXXXXXXXXTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLN 200
                                           LG    L  LD+S N             
Sbjct: 217 P------------------------------FLGDCSALQHLDISGN------------- 233
Query: 201 KLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLY 260
           KL G  S    +  T+L +  + +N+         IPP  L                   
Sbjct: 234 KLSGDFSRA-ISTCTELKLLNISSNQFV-----GPIPPLPL------------------- 268
Query: 261 SQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGE----------------- 303
             K LQ+L L  +  +G  P+ L  +   L  LDL  N  +G                  
Sbjct: 269 --KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 326
Query: 304 ---------LTNLTKASQLSYLSLIANNFSGSLPL----ISSNLTVLELSGNSLSGPIFH 350
                    +  L K   L  L L  N FSG LP     +S++L  L+LS N+ SGPI  
Sbjct: 327 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP 386
Query: 351 FLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTXXXX---- 406
            LC     T  L+ L+L  N   GK+P    +   L++L LS N  +G +P+        
Sbjct: 387 NLCQNPKNT--LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKL 444
Query: 407 --------------------XXXXXXXXXRKNRLSGTIPILLKNCTSLVTLDVGENEVFG 446
                                          N L+G IP  L NCT+L  + +  N + G
Sbjct: 445 RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG 504
Query: 447 NIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTA 506
            IP W G R   + +L L +N+F G +P EL D   L  LDL  N  +GTIP  +   + 
Sbjct: 505 EIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG 563
Query: 507 MATVNPFTGNAIEY-----------------------SFPLN--STIGPGTVTEQELVVT 541
               N   G    Y                       S  LN  ST  P  +T +   V 
Sbjct: 564 KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR---VY 620
Query: 542 KGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMR 601
            G  +   +    +  +D S N+ SG +P  + ++  +  LNL +N  +G IP+ +G +R
Sbjct: 621 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR 680
Query: 602 SLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSSTQLQSFNASCFLGN-NL 660
            L  +D S NK  G IPQ+MS+LT L  ++LSNN L+G IP   Q ++F  + FL N  L
Sbjct: 681 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGL 740
Query: 661 CGAPLPKNCTDENV 674
           CG PLP+ C   N 
Sbjct: 741 CGYPLPR-CDPSNA 753

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  181 bits (458), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 206/734 (28%), Positives = 292/734 (39%), Gaps = 166/734 (22%)
Query: 27  STLTTLDLSHNQFDNSFVPAWVFG-LSRLHFLNLGYN--NFQGPIPEGLQNLTSLKHLGL 83
           ++LT+LDLS N            G  S L FLN+  N  +F G +  GL+ L SL+ L L
Sbjct: 97  ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK-LNSLEVLDL 155
Query: 84  PFNHFSSS-VPKWF--DRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEI 140
             N  S + V  W   D    L+HL++S N + G +   ++R  NL  L +     +  I
Sbjct: 156 SANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGI 213
Query: 141 SEILEIFSGCVXXXXXXXXXXXXXXXXXXTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLN 200
                                           LG    L  LD+S N             
Sbjct: 214 P------------------------------FLGDCSALQHLDISGN------------- 230
Query: 201 KLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLY 260
           KL G  S    +  T+L +  + +N+         IPP  L                   
Sbjct: 231 KLSGDFSRA-ISTCTELKLLNISSNQFV-----GPIPPLPL------------------- 265
Query: 261 SQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGE----------------- 303
             K LQ+L L  +  +G  P+ L  +   L  LDL  N  +G                  
Sbjct: 266 --KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 323
Query: 304 ---------LTNLTKASQLSYLSLIANNFSGSLPL----ISSNLTVLELSGNSLSGPIFH 350
                    +  L K   L  L L  N FSG LP     +S++L  L+LS N+ SGPI  
Sbjct: 324 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP 383
Query: 351 FLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTXXXX---- 406
            LC     T  L+ L+L  N   GK+P    +   L++L LS N  +G +P+        
Sbjct: 384 NLCQNPKNT--LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKL 441
Query: 407 --------------------XXXXXXXXXRKNRLSGTIPILLKNCTSLVTLDVGENEVFG 446
                                          N L+G IP  L NCT+L  + +  N + G
Sbjct: 442 RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG 501
Query: 447 NIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTA 506
            IP W G R   + +L L +N+F G +P EL D   L  LDL  N  +GTIP  +   + 
Sbjct: 502 EIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG 560
Query: 507 MATVNPFTGNAIEY-----------------------SFPLN--STIGPGTVTEQELVVT 541
               N   G    Y                       S  LN  ST  P  +T +   V 
Sbjct: 561 KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR---VY 617
Query: 542 KGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMR 601
            G  +   +    +  +D S N+ SG +P  + ++  +  LNL +N  +G IP+ +G +R
Sbjct: 618 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR 677
Query: 602 SLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSSTQLQSFNASCFLGN-NL 660
            L  +D S NK  G IPQ+MS+LT L  ++LSNN L+G IP   Q ++F  + FL N  L
Sbjct: 678 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGL 737
Query: 661 CGAPLPKNCTDENV 674
           CG PLP+ C   N 
Sbjct: 738 CGYPLPR-CDPSNA 750

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 85.5 bits (210), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 114/236 (48%), Gaps = 12/236 (5%)
Query: 440 GENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPN 499
           G N + G IP     + +++  L +   N  G +P  L  +  L  LD + N LSGT+P 
Sbjct: 85  GINNLVGPIPPAIA-KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP 143
Query: 500 CIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTK----GVAADYNEILNLV 555
            I +L  +  +  F GN I  + P   + G  +     + +++    G        LNL 
Sbjct: 144 SISSLPNLVGIT-FDGNRISGAIP--DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA 200
Query: 556 RIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTG 615
             +D S+N+  G   +   + K  Q ++L+ N     + + +G  ++L  +D   N+  G
Sbjct: 201 -FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYG 258
Query: 616 EIPQSMSSLTFLNHLNLSNNYLTGKIPSSTQLQSFNASCFLGNN-LCGAPLPKNCT 670
            +PQ ++ L FL+ LN+S N L G+IP    LQ F+ S +  N  LCG+PLP  CT
Sbjct: 259 TLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPA-CT 313

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/118 (38%), Positives = 59/118 (50%), Gaps = 5/118 (4%)
Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFG-LSRLHFLNLG 60
           L +L EL L   QL   P       + LT L+L+HNQ  +  +P  VF  L+ L  L+L 
Sbjct: 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQS--LPKGVFDKLTNLTELDLS 165
Query: 61  YNNFQGPIPEGL-QNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIP 117
           YN  Q  +PEG+   LT LK L L  N   S     FDRLT L+++ L  N  +   P
Sbjct: 166 YNQLQS-LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 59/127 (46%), Gaps = 5/127 (3%)
Query: 7   ELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFG-LSRLHFLNLGYNNFQ 65
           +LDL + +L   P       + L  L L+ N+     +PA +F  L  L  L +  N  Q
Sbjct: 41  KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT--LPAGIFKELKNLETLWVTDNKLQ 98
Query: 66  GPIPEGL-QNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLC 124
             +P G+   L +L  L L  N   S  P+ FD LT L +LSL YN L+        +L 
Sbjct: 99  A-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT 157
Query: 125 NLRRLYL 131
           +L+ L L
Sbjct: 158 SLKELRL 164

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/145 (34%), Positives = 71/145 (48%), Gaps = 5/145 (3%)
Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFG-LSRLHFLNLG 60
           L  L  L+L   QL         + + L TL L++NQ   + +P  VF  L++L  L LG
Sbjct: 58  LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL--ASLPLGVFDHLTQLDKLYLG 115
Query: 61  YNNFQGPIPEGL-QNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRS 119
            N  +  +P G+   LT LK L L  N   S     FD+LT+L+ LSLS N L+     +
Sbjct: 116 GNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGA 174
Query: 120 MARLCNLRRLYLGGAKLNQEISEIL 144
             RL  L+ + L G + +    EIL
Sbjct: 175 FDRLGKLQTITLFGNQFDCSRCEIL 199

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 49/145 (33%), Positives = 70/145 (48%), Gaps = 5/145 (3%)
Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFG-LSRLHFLNLG 60
           L  L  L+L   QL         + + L TL L++NQ   + +P  VF  L++L  L LG
Sbjct: 58  LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL--ASLPLGVFDHLTQLDKLYLG 115
Query: 61  YNNFQGPIPEGL-QNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRS 119
            N  +  +P G+   LT LK L L  N   S     FD+LT+L+ LSLS N L+     +
Sbjct: 116 GNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGA 174
Query: 120 MARLCNLRRLYLGGAKLNQEISEIL 144
             RL  L+ + L G + +    E L
Sbjct: 175 FDRLGKLQTITLFGNQFDCSRCETL 199

>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B61 Length = 177

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 4   SLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFG-LSRLHFLNLGYN 62
           S   L+L + +L   P       + LT L LS NQ  +  +P  VF  L++L  L L  N
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS--LPDGVFDKLTKLTILYLHEN 86
Query: 63  NFQGPIPEGL-QNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPR 118
             Q  +P G+   LT LK L L  N   S     FDRLT L+ + L  N  +   PR
Sbjct: 87  KLQS-LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 142

>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex Length = 612

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/142 (38%), Positives = 69/142 (48%), Gaps = 8/142 (5%)
Query: 3   PSLVELDLSNCQLH-HFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
           P L  LD++   LH   P  P  N   L  L+LSH   D S     + GL  L  LNL  
Sbjct: 399 PQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTS-NQHLLAGLQDLRHLNLQG 457
Query: 62  NNFQ-GPIPEG--LQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPR 118
           N+FQ G I +   LQ + SL+ L L   +  S   + F  L ++ HL LS+NSL G    
Sbjct: 458 NSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTG---D 514
Query: 119 SMARLCNLRRLYLGGAKLNQEI 140
           SM  L +L+ LYL  A  N  I
Sbjct: 515 SMDALSHLKGLYLNMASNNIRI 536

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 68/145 (46%), Gaps = 5/145 (3%)
Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFG-LSRLHFLNLG 60
           L +L  L L+  QL   P       + L  L L  NQ  +  +P  VF  L+ L +L L 
Sbjct: 84  LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS--LPDGVFDKLTNLTYLYLY 141
Query: 61  YNNFQGPIPEGL-QNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRS 119
           +N  Q  +P+G+   LT+L  L L  N   S     FD+LT L+ LSL+ N L+      
Sbjct: 142 HNQLQS-LPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGV 200
Query: 120 MARLCNLRRLYLGGAKLNQEISEIL 144
             RL +L  ++L     +   S+IL
Sbjct: 201 FDRLTSLTHIWLLNNPWDCACSDIL 225

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 52/117 (44%)
Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
           L +L+ LD+S+              S+L  L ++ N F  +F+P     L  L FL+L  
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
Query: 62  NNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPR 118
              +   P    +L+SL+ L +  N   S     FDRLT L+ + L  N  +   PR
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536

>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr) Rbc36 In Complex With H-Trisaccharide Length = 229

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 54/117 (46%), Gaps = 4/117 (3%)
Query: 29  LTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNH 87
           L  L L  NQ     +P  VF  L++L  L+LG N            L  LK L +  N 
Sbjct: 66  LKELYLGSNQL--GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNK 123
Query: 88  FSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEIL 144
            +  +P+  +RLTHL HL+L  N L+     +  RL +L   YL G   + E  +I+
Sbjct: 124 LTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDIM 179

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	695
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-152
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-105
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-89
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-32
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-77
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-44
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-28
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-68
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-22
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-11
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-66
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-33
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-32
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-28
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-19
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-56
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-35
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-30
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-53
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-51
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-51
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-50
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-46
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-34
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-46
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-45
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-24
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-42
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-33
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-40
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-40
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-36
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-34
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-34
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-21
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-19
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-34
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-25
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-28
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-25
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-25
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-24
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-23
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-27
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-27
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-23
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-14
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-26
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-21
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-15
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-15
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-26
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-22
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-21
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-19
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-18
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-17
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-24
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-24
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-17
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-15
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-24
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-22
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-24
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-23
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-21
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-23
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-21
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-20
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-16
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-23
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-20
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-11
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-23
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-20
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-20
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-22
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-17
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-21
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-21
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-21
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-21
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-12
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-19
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-14
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-12
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-18
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-14
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-18
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-18
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-17
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-17
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-17
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-18
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-18
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-16
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-16
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-14
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-14
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-16
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-16
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-16
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-12
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-15
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-13
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-14
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-13
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-13
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-11
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-10
3m19_A	251	Variable lymphocyte receptor A diversity region; a	7e-13
3m19_A	251	Variable lymphocyte receptor A diversity region; a	9e-13
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-10
3m19_A	251	Variable lymphocyte receptor A diversity region; a	9e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	5e-12
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-11
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-08
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	9e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-11
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	7e-09
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-11
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-11
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	7e-08
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	7e-11
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	9e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-09
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	8e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	7e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-09
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	9e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	8e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-08
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	6e-06
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	6e-08
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-07
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	1e-07
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	1e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	2e-07
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	2e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	7e-07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	8e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	5e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-04
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	2e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  459 bits (1184), Expect = e-152
 Identities = 191/720 (26%), Positives = 289/720 (40%), Gaps = 92/720 (12%)

Query: 2   LPSLVELDLSNCQLHH-FPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFG-LSRLHFLNL 59
           L  L  L LSN  ++           ++LT+LDLS N            G  S L FLN+
Sbjct: 76  LTGLESLFLSNSHINGSVSGF--KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNV 133

Query: 60  GYNNFQGPIP-EGLQNLTSLKHLGLPFNHFSSSVPKWFDR---LTHLEHLSLSYNSLEGR 115
             N    P    G   L SL+ L L  N  S +    +        L+HL++S N + G 
Sbjct: 134 SSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGD 193

Query: 116 IPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQ 175
           +   ++R  NL  L +     +  I  + +  +      L+ L ++ + +SG  +  +  
Sbjct: 194 VD--VSRCVNLEFLDVSSNNFSTGIPFLGDCSA------LQHLDISGNKLSGDFSRAIST 245

Query: 176 FKNLDSLDLSNNSIVGP---------RVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANK 226
              L  L++S+N  VGP         + L L  NK  G + +        L+   +  N 
Sbjct: 246 CTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH 305

Query: 227 LTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKS 286
                                        P +  S   L+ L L ++  SG  P   L  
Sbjct: 306 FY------------------------GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLK 341

Query: 287 ASQLYLLDLGHNQIHG----ELTNLTKASQLSYLSLIANNFSGSLP-----LISSNLTVL 337
              L +LDL  N+  G     LTNL+  + L  L L +NNFSG +         + L  L
Sbjct: 342 MRGLKVLDLSFNEFSGELPESLTNLS--ASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL 399

Query: 338 ELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFT 397
            L  N  +G I   L         L  L L  N L G +P    S   L  L L  N   
Sbjct: 400 YLQNNGFTGKIPPTLSNCSE----LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455

Query: 398 GNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFS 457
           G +P  L  + +L +L L  N L+G IP  L NCT+L  + +  N + G IP W G R  
Sbjct: 456 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLE 514

Query: 458 RMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNA 517
            + +L L +N+F G +P EL D   L  LDL  N  +GTIP  +   +     N   G  
Sbjct: 515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK- 573

Query: 518 IEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLK 577
             Y +  N  +         L+  +G+ ++    L+     + +  ++ G       N  
Sbjct: 574 -RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 632

Query: 578 AVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYL 637
           ++  L++SYN+ +G IP+ IG+M  L  ++   N  +G IP  +  L  LN L+LS+N L
Sbjct: 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 692

Query: 638 TGKIPSS------------------------TQLQSFNASCFLGN-NLCGAPLPKNCTDE 672
            G+IP +                         Q ++F  + FL N  LCG PLP+     
Sbjct: 693 DGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSN 752

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  336 bits (864), Expect = e-105
 Identities = 169/692 (24%), Positives = 269/692 (38%), Gaps = 129/692 (18%)

Query: 4   SLVELDLSNCQLH-HFPQLP--VANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLG 60
            +  +DLS+  L+  F  +   + + + L +L LS++  + S   +     + L  L+L 
Sbjct: 51  KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSV--SGFKCSASLTSLDLS 108

Query: 61  YNNFQGPIPEGLQ--NLTSLKHLGLPFNHFSSSVPK-WFDRLTHLEHLSLSYNSLEGRIP 117
            N+  GP+       + + LK L +  N            +L  LE L LS NS+ G   
Sbjct: 109 RNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANV 168

Query: 118 RSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFK 177
                                                L+ LA++ + ISG +   + +  
Sbjct: 169 VGWVLSDGCGE--------------------------LKHLAISGNKISGDVD--VSRCV 200

Query: 178 NLDSLDLSNNSIVGP----------RVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKL 227
           NL+ LD+S+N+              + L +  NKL G  S    +  T+L +  + +N+ 
Sbjct: 201 NLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSR-AISTCTELKLLNISSNQF 259

Query: 228 TLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSA 287
                   IPP  L                     K LQ+L L  +  +G  P+ L  + 
Sbjct: 260 VGP-----IPPLPL---------------------KSLQYLSLAENKFTGEIPDFLSGAC 293

Query: 288 SQLYLLDLGHNQIHGEL-TNLTKASQLSYLSLIANNFSGSLPLIS----SNLTVLELSGN 342
             L  LDL  N  +G +       S L  L+L +NNFSG LP+ +      L VL+LS N
Sbjct: 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353

Query: 343 SLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPD--CWMSYQNLMALDLSNNKFTGNL 400
             SG +   L    N +  L  L L  N   G +    C      L  L L NN FTG +
Sbjct: 354 EFSGELPESLT---NLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI 410

Query: 401 PTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMV 460
           P +L + S LVSLHL  N LSGTIP  L + + L  L +  N + G IP         + 
Sbjct: 411 PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY-VKTLE 469

Query: 461 LLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATV----NPFTGN 516
            LIL  N+  G +P+ L +   L  + L++N L+G IP  I  L  +A +    N F+G 
Sbjct: 470 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG- 528

Query: 517 AIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNL 576
                  + + +G                         +  +D + NLF+GT+P  +   
Sbjct: 529 ------NIPAELGD---------------------CRSLIWLDLNTNLFNGTIPAAMFKQ 561

Query: 577 KAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVN--KFTGEIPQSMSSLTFLNHLNLSN 634
               S  ++ N   G+    I      +    + N  +F G   + ++ L+  N  N+++
Sbjct: 562 ----SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS 617

Query: 635 NYLTGKIPSS----TQLQSFNASCFLGNNLCG 662
               G    +      +   + S    N L G
Sbjct: 618 RVYGGHTSPTFDNNGSMMFLDMSY---NMLSG 646

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  293 bits (753), Expect = 6e-89
 Identities = 152/632 (24%), Positives = 238/632 (37%), Gaps = 137/632 (21%)

Query: 52  SRLHFLNLGYNNFQ---GPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLS 108
            ++  ++L           +   L +LT L+ L L  +H + SV   F     L  L LS
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLS 108

Query: 109 YNSLEGRIP--RSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSIS 166
            NSL G +    S+     L+ L +    L+      +       S  LE L L+++SIS
Sbjct: 109 RNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK--VSGGLKLNS--LEVLDLSANSIS 164

Query: 167 GHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANK 226
           G              L          + L +  NK+ G +     +              
Sbjct: 165 GANVVGWVLSDGCGEL----------KHLAISGNKISGDVD---VSRCVN---------- 201

Query: 227 LTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKS 286
                                                 L+FLD+ ++  S   P   L  
Sbjct: 202 --------------------------------------LEFLDVSSNNFSTGIP--FLGD 221

Query: 287 ASQLYLLDLGHNQIHGEL-TNLTKASQLSYLSLIANNFSGSLPL-ISSNLTVLELSGNSL 344
            S L  LD+  N++ G+    ++  ++L  L++ +N F G +P     +L  L L+ N  
Sbjct: 222 CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKF 281

Query: 345 SGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPT-S 403
           +G I  FL    +    L  L L  N   G +P  + S   L +L LS+N F+G LP  +
Sbjct: 282 TGEIPDFLSGACD---TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDT 338

Query: 404 LGSLSSLVSLHLRKNRLSGTIPILLKNCT-SLVTLDVGENEVFGNIPSWFGE-RFSRMVL 461
           L  +  L  L L  N  SG +P  L N + SL+TLD+  N   G I     +   + +  
Sbjct: 339 LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE 398

Query: 462 LILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYS 521
           L L++N F G +P  L + + L  L L+ N LSGTIP+ + +L+ +              
Sbjct: 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKL-------------- 444

Query: 522 FPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQS 581
                                             R +    N+  G +P  L  +K +++
Sbjct: 445 ----------------------------------RDLKLWLNMLEGEIPQELMYVKTLET 470

Query: 582 LNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKI 641
           L L +N  TG IP  +    +L  I  S N+ TGEIP+ +  L  L  L LSNN  +G I
Sbjct: 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 530

Query: 642 PSS----TQLQSFNASCFLGNNLCGAPLPKNC 669
           P+       L   + +    N   G  +P   
Sbjct: 531 PAELGDCRSLIWLDLN---TNLFNG-TIPAAM 558

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  132 bits (334), Expect = 4e-32
 Identities = 54/265 (20%), Positives = 109/265 (41%), Gaps = 37/265 (13%)

Query: 406 SLSSLVSLHLRKNRLS---GTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLL 462
               + S+ L    L+     +   L + T L +L +  + + G++  +     + +  L
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFK--CSASLTSL 105

Query: 463 ILRSNNFDGPLPT--ELCDLAFLQILDLADNNLSGTIP-NCIHNLTAMATVNPFTGNAIE 519
            L  N+  GP+ T   L   + L+ L+++ N L      +    L ++  ++  + N+I 
Sbjct: 106 DLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLD-LSANSIS 164

Query: 520 YSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAV 579
            +  +   +  G                       ++ +  S N  SG + +       +
Sbjct: 165 GANVVGWVLSDG--------------------CGELKHLAISGNKISGDVDVS--RCVNL 202

Query: 580 QSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTG 639
           + L++S N F+  IP  +G   +L+ +D S NK +G+  +++S+ T L  LN+S+N   G
Sbjct: 203 EFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG 261

Query: 640 KIPSS--TQLQSFNASCFLGNNLCG 662
            IP      LQ  + +    N   G
Sbjct: 262 PIPPLPLKSLQYLSLA---ENKFTG 283

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 80.7 bits (200), Expect = 7e-16
 Identities = 37/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%)

Query: 478 CDLAFLQILDLADNNLS---GTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVT 534
           C    +  +DL+   L+     + + + +LT + ++   + + I  S             
Sbjct: 47  CRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLF-LSNSHINGSVS----------- 94

Query: 535 EQELVVTKGVAADYNEILNL--VRIIDFSKNLFSGTLP--MGLTNLKAVQSLNLSYNIFT 590
                                 +  +D S+N  SG +     L +   ++ LN+S N   
Sbjct: 95  ---------------GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD 139

Query: 591 GRIPETIGT-MRSLESIDFSVNKFTGEIPQSM---SSLTFLNHLNLSNNYLTGKIPSS-- 644
                + G  + SLE +D S N  +G              L HL +S N ++G +  S  
Sbjct: 140 FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRC 199

Query: 645 TQLQSFNASCFLGNNLCG 662
             L+  + S    NN   
Sbjct: 200 VNLEFLDVS---SNNFST 214

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  259 bits (665), Expect = 4e-77
 Identities = 123/672 (18%), Positives = 224/672 (33%), Gaps = 82/672 (12%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLG 60
             ++  L+L++ QL   P      +S LT+LD+  N    S +   +   L  L  LNL 
Sbjct: 24  PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI--SKLEPELCQKLPMLKVLNLQ 81

Query: 61  YNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSM 120
           +N       +     T+L  L L  N         F +  +L  L LS+N L      + 
Sbjct: 82  HNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQ 141

Query: 121 ARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLD 180
            +L NL+ L L   K+    S   E      ++ L+ L L+S+ I             L 
Sbjct: 142 VQLENLQELLLSNNKIQALKS---EELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLF 198

Query: 181 SLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQ 240
            L L+N  +      +L L               T +    +  ++L+            
Sbjct: 199 GLFLNNVQLGPSLTEKLCL-----------ELANTSIRNLSLSNSQLS------TTSNTT 241

Query: 241 LIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQI 300
            + L   +                L  LDL  + ++    N       QL    L +N I
Sbjct: 242 FLGLKWTN----------------LTMLDLSYNNLNV-VGNDSFAWLPQLEYFFLEYNNI 284

Query: 301 HGELTN-LTKASQLSYLSLIANNFSGSLPLIS------------SNLTVLELSGNSLSGP 347
               ++ L     + YL+L  +    S+ L S              L  L +  N + G 
Sbjct: 285 QHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI 344

Query: 348 IFHFLCYTINETMKLKFLFLDRNILQGKLPDCW----MSYQNLMALDLSNNKFTGNLPTS 403
             +     IN    LK+L L  +    +         +++  L  L+L+ NK +     +
Sbjct: 345 KSNMFTGLIN----LKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA 400

Query: 404 LGSLSSLVSLHLRKNRLSGTIPI-LLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLL 462
              L  L  L L  N +   +     +   ++  + +  N+      + F      +  L
Sbjct: 401 FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFAL-VPSLQRL 459

Query: 463 ILRSNNFDG--PLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEY 520
           +LR          P+    L  L ILDL++NN++    + +  L  +  ++    N +  
Sbjct: 460 MLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILD-LQHNNLAR 518

Query: 521 SFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQ 580
            +   +  GP                   + L+ + I++   N F         +L  ++
Sbjct: 519 LWKHANPGGPIYFL---------------KGLSHLHILNLESNGFDEIPVEVFKDLFELK 563

Query: 581 SLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMS-SLTFLNHLNLSNNYLTG 639
            ++L  N              SL+S++   N  T    +    +   L  L++  N    
Sbjct: 564 IIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC 623

Query: 640 KIPSSTQLQSFN 651
              S     ++ 
Sbjct: 624 TCESIAWFVNWI 635

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  168 bits (428), Expect = 2e-44
 Identities = 95/536 (17%), Positives = 165/536 (30%), Gaps = 69/536 (12%)

Query: 124 CNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLD 183
            +         KL Q   ++           +  L L  + +         ++  L SLD
Sbjct: 4   VSHEVADCSHLKLTQVPDDLP--------TNITVLNLTHNQLRRLPAANFTRYSQLTSLD 55

Query: 184 LSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIE 243
           +  N+I                L       L  L V  +  N+L+    + +     L E
Sbjct: 56  VGFNTISK--------------LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTE 101

Query: 244 LGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHG- 302
           L L S  +          QK+L  LDL ++G+S             L  L L +N+I   
Sbjct: 102 LHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS-TKLGTQVQLENLQELLLSNNKIQAL 160

Query: 303 --ELTNLTKASQLSYLSLIANNFSGSLPLI---SSNLTVLELSGNSLSGPIFHFLCYTIN 357
             E  ++   S L  L L +N      P        L  L L+   L   +   LC  + 
Sbjct: 161 KSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELA 220

Query: 358 ETMKLKFLFLDRNILQGKLPD--CWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHL 415
            T  ++ L L  + L          + + NL  LDLS N        S   L  L    L
Sbjct: 221 NT-SIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFL 279

Query: 416 RKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPT 475
             N +       L    ++  L++  +                     +   +       
Sbjct: 280 EYNNIQHLFSHSLHGLFNVRYLNLKRS----------------FTKQSISLASLPKIDDF 323

Query: 476 ELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTE 535
               L  L+ L++ DN++ G   N    L  +  ++  + +        N T        
Sbjct: 324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLS-LSNSFTSLRTLTNETF------- 375

Query: 536 QELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIP- 594
                        +   + + I++ +KN  S       + L  ++ L+L  N     +  
Sbjct: 376 ------------VSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG 423

Query: 595 ETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSSTQLQSF 650
           +    + ++  I  S NK+      S + +  L  L L    L     S +  Q  
Sbjct: 424 QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPL 479

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  118 bits (299), Expect = 5e-28
 Identities = 57/349 (16%), Positives = 106/349 (30%), Gaps = 47/349 (13%)

Query: 331 SSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALD 390
           + +  V + S   L+                +  L L  N L+      +  Y  L +LD
Sbjct: 3   TVSHEVADCSHLKLTQVPDDLPTN-------ITVLNLTHNQLRRLPAANFTRYSQLTSLD 55

Query: 391 LSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPS 450
           +  N  +   P     L  L  L+L+ N LS         CT+L  L +  N +     +
Sbjct: 56  VGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNN 115

Query: 451 WFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMA-- 508
            F +    ++ L L  N            L  LQ L L++N +       +      +  
Sbjct: 116 PFVK-QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLK 174

Query: 509 TVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGT 568
            +   + N I           PG                    +  +  +  +      +
Sbjct: 175 KLE-LSSNQI-------KEFSPGCFHA----------------IGRLFGLFLNNVQLGPS 210

Query: 569 LPMGLT---NLKAVQSLNLSYNIFTGRIPETIGTMR--SLESIDFSVNKFTGEIPQSMSS 623
           L   L       ++++L+LS +  +     T   ++  +L  +D S N        S + 
Sbjct: 211 LTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW 270

Query: 624 LTFLNHLNLSNNYLTGKIPSS----TQLQSFNASCFLGNNLCGAPLPKN 668
           L  L +  L  N +      S      ++  N    L  +     +   
Sbjct: 271 LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLN----LKRSFTKQSISLA 315

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  232 bits (595), Expect = 7e-68
 Identities = 121/668 (18%), Positives = 210/668 (31%), Gaps = 104/668 (15%)

Query: 12  NCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFG-LSRLHFLNLGYNNFQGPIPE 70
            C   +F ++P     +   LDLS N      + ++ F     L  L+L     Q     
Sbjct: 13  QCMELNFYKIPDNLPFSTKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIEDG 70

Query: 71  GLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLY 130
             Q+L+ L  L L  N   S     F  L+ L+ L     +L       +  L  L+ L 
Sbjct: 71  AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130

Query: 131 LGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLD----SLDLSN 186
           +    +     ++ E FS   +  LE L L+S+ I       L     +     SLDLS 
Sbjct: 131 VAHNLIQS--FKLPEYFSNLTN--LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 187 NSIVGP----------RVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWI 236
           N +               L L  N     + +     L  L V  +   +   +   +  
Sbjct: 187 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 246

Query: 237 PPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLG 296
               L   GL +  +          +  L +LD +   I   F        + +    L 
Sbjct: 247 DKSAL--EGLCNLTI---------EEFRLAYLDYYLDDIIDLFNCL-----TNVSSFSLV 290

Query: 297 HNQIHGELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTI 356
              I   + + +      +L L+   F     L   +L  L  + N            + 
Sbjct: 291 SVTIER-VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF------SE 343

Query: 357 NETMKLKFLFLDRNIL--QGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLH 414
            +   L+FL L RN L  +G          +L  LDLS N     + ++   L  L  L 
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLD 402

Query: 415 LRKNRLSGTIPI-LLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNF-DGP 472
            + + L       +  +  +L+ LD+            F    S + +L +  N+F +  
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG-LSSLEVLKMAGNSFQENF 461

Query: 473 LPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGT 532
           LP    +L  L  LDL+   L    P   ++L+++                         
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL------------------------- 496

Query: 533 VTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGR 592
                                  ++++ S N F          L ++Q L+ S N     
Sbjct: 497 -----------------------QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 533

Query: 593 IPETIGTM-RSLESIDFSVNKFTGEIPQS--MSSLTFLNHLNLSNNYLTGKIPSS---TQ 646
             + +     SL  ++ + N F         +  +     L +    +    PS      
Sbjct: 534 KKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMP 593

Query: 647 LQSFNASC 654
           + S N +C
Sbjct: 594 VLSLNITC 601

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  100 bits (251), Expect = 3e-22
 Identities = 33/133 (24%), Positives = 55/133 (41%), Gaps = 1/133 (0%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
           L +L+ LD+S+              S+L  L ++ N F  +F+P     L  L FL+L  
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479

Query: 62  NNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMA 121
              +   P    +L+SL+ L +  N+F S     +  L  L+ L  S N +     + + 
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 539

Query: 122 RLC-NLRRLYLGG 133
               +L  L L  
Sbjct: 540 HFPSSLAFLNLTQ 552

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 66.2 bits (162), Expect = 2e-11
 Identities = 19/117 (16%), Positives = 35/117 (29%), Gaps = 7/117 (5%)

Query: 555 VRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFT 614
            + +D S N           +   +Q L+LS             ++  L ++  + N   
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 615 GEIPQSMSSLTFLNHLNLSNNYLTGKIPSS----TQLQSFNASCFLGNNLCGAPLPK 667
                + S L+ L  L      L             L+  N +    N +    LP+
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA---HNLIQSFKLPE 143

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  219 bits (560), Expect = 5e-66
 Identities = 84/306 (27%), Positives = 128/306 (41%), Gaps = 31/306 (10%)

Query: 369 RNILQGKLPDCWMSYQNLMALDLSNNKFTG--NLPTSLGSLSSLVSLHLRK-NRLSGTIP 425
                G L D       +  LDLS         +P+SL +L  L  L++   N L G IP
Sbjct: 35  NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP 94

Query: 426 ILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQI 485
             +   T L  L +    V G IP +   +   +V L    N   G LP  +  L  L  
Sbjct: 95  PAIAKLTQLHYLYITHTNVSGAIPDFLS-QIKTLVTLDFSYNALSGTLPPSISSLPNLVG 153

Query: 486 LDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVA 545
           +    N +SG IP+   + + + T    + N +    P   T                  
Sbjct: 154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP--PTFA---------------- 195

Query: 546 ADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLES 605
                 LNL  + D S+N+  G   +   + K  Q ++L+ N     + + +G  ++L  
Sbjct: 196 -----NLNLAFV-DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNG 248

Query: 606 IDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSSTQLQSFNASCFLGNN-LCGAP 664
           +D   N+  G +PQ ++ L FL+ LN+S N L G+IP    LQ F+ S +  N  LCG+P
Sbjct: 249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP 308

Query: 665 LPKNCT 670
           LP  CT
Sbjct: 309 LP-ACT 313

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  129 bits (328), Expect = 2e-33
 Identities = 72/310 (23%), Positives = 119/310 (38%), Gaps = 47/310 (15%)

Query: 22  PVANFSTLTTLDLSHNQFDNSF-VPAWVFGLSRLHFLNL-GYNNFQGPIPEGLQNLTSLK 79
                  +  LDLS       + +P+ +  L  L+FL + G NN  GPIP  +  LT L 
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104

Query: 80  HLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQE 139
           +L +   + S ++P +  ++  L  L  SYN+L G +P S++ L NL  +   G +++  
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164

Query: 140 ISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYL 199
           I +     S   S    S+ ++ + ++G +        NL  +DLS              
Sbjct: 165 IPD--SYGS--FSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSR------------- 206

Query: 200 NKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWL 259
           N L G  S + F +        +  N L        +    L                  
Sbjct: 207 NMLEGDASVL-FGSDKNTQKIHLAKNSLAFD-----LGKVGLS----------------- 243

Query: 260 YSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLI 319
              K+L  LDL N+ I GT P + L     L+ L++  N + GE+       +    +  
Sbjct: 244 ---KNLNGLDLRNNRIYGTLP-QGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYA 299

Query: 320 ANNFSGSLPL 329
            N      PL
Sbjct: 300 NNKCLCGSPL 309

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  127 bits (321), Expect = 1e-32
 Identities = 56/243 (23%), Positives = 95/243 (39%), Gaps = 26/243 (10%)

Query: 2   LPSLVELDLSNCQLHHFPQLP--VANFSTLTTLDLSHNQFDNSF---VPAWVFGLSRLHF 56
              +  LDLS   L     +P  +AN   L  L +      N+    +P  +  L++LH+
Sbjct: 49  TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGI---NNLVGPIPPAIAKLTQLHY 105

Query: 57  LNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRI 116
           L + + N  G IP+ L  + +L  L   +N  S ++P     L +L  ++   N + G I
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165

Query: 117 PRSMARLCNLRR-LYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQ 175
           P S      L   + +   +L  +I       +      L  + L+ + + G  +   G 
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN------LAFVDLSRNMLEGDASVLFGS 219

Query: 176 FKNLDSLDLSNNSIVGP----------RVLQLYLNKLHGTLSEIHFANLTKLSVFLVGAN 225
            KN   + L+ NS+               L L  N+++GTL +     L  L    V  N
Sbjct: 220 DKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ-GLTQLKFLHSLNVSFN 278

Query: 226 KLT 228
            L 
Sbjct: 279 NLC 281

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  113 bits (286), Expect = 6e-28
 Identities = 72/387 (18%), Positives = 120/387 (31%), Gaps = 115/387 (29%)

Query: 57  LNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFS--SSVPKWFDRLTHLEHLSLS-YNSLE 113
            +     + G + +       + +L L   +      +P     L +L  L +   N+L 
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90

Query: 114 GRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQL 173
           G IP ++A+L  L  LY+                                 +SG + D L
Sbjct: 91  GPIPPAIAKLTQLHYLYITH---TN--------------------------VSGAIPDFL 121

Query: 174 GQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKR 233
            Q K L +LD S              N L GT                            
Sbjct: 122 SQIKTLVTLDFSY-------------NALSGT---------------------------- 140

Query: 234 DWIPPFQLIELG-LRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYL 292
             +PP     +  L +                L  +    + ISG  P+     +     
Sbjct: 141 --LPP----SISSLPN----------------LVGITFDGNRISGAIPDSYGSFSKLFTS 178

Query: 293 LDLGHNQIHG----ELTNLTKASQLSYLSLIANNFSGSLPLI---SSNLTVLELSGNSLS 345
           + +  N++ G       NL     L+++ L  N   G   ++     N   + L+ NSL+
Sbjct: 179 MTISRNRLTGKIPPTFANLN----LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234

Query: 346 GPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLG 405
             +       +  +  L  L L  N + G LP      + L +L++S N   G +P   G
Sbjct: 235 FDLG-----KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-G 288

Query: 406 SLSSLVSLHLRKNRLSGTIPILLKNCT 432
           +L          N+     P  L  CT
Sbjct: 289 NLQRFDVSAYANNKCLCGSP--LPACT 313

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 89.5 bits (223), Expect = 1e-19
 Identities = 28/134 (20%), Positives = 50/134 (37%), Gaps = 7/134 (5%)

Query: 2   LPSLVE-LDLSNCQLH-HFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNL 59
              L   + +S  +L    P    AN + L  +DLS N  +                ++L
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPT-FANLN-LAFVDLSRNMLEGD-ASVLFGSDKNTQKIHL 228

Query: 60  GYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRS 119
             N+    + + +    +L  L L  N    ++P+   +L  L  L++S+N+L G IP+ 
Sbjct: 229 AKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287

Query: 120 MARLCNLRRLYLGG 133
              L          
Sbjct: 288 -GNLQRFDVSAYAN 300

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 51.4 bits (124), Expect = 4e-07
 Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 10/89 (11%)

Query: 581 SLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGE--IPQSMSSLTFLNHLNLSN-NYL 637
           + +     + G + +T      + ++D S         IP S+++L +LN L +   N L
Sbjct: 30  TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89

Query: 638 TGKIPSS----TQLQSFNASCFLGNNLCG 662
            G IP +    TQL     +     N+ G
Sbjct: 90  VGPIPPAIAKLTQLHYLYIT---HTNVSG 115

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  202 bits (517), Expect = 1e-56
 Identities = 84/671 (12%), Positives = 179/671 (26%), Gaps = 141/671 (21%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQF---DNSFVPAWVFGLSRLHFLN 58
              +  L L            +   + L  L L  +     +  F P  +          
Sbjct: 80  NGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQ 139

Query: 59  LGYNNFQGPIPEGL--QNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRI 116
               ++Q    +    ++ + L    +  +    S+ K          +    N++   +
Sbjct: 140 KMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-V 198

Query: 117 PRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQF 176
            +++ RL  LR+ Y+G +    E                E+     +        +    
Sbjct: 199 SKAVMRLTKLRQFYMGNSPFVAENICEA----------WENENSEYAQQYKTEDLKWDNL 248

Query: 177 KNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWI 236
           K+L  +++ N   +          KL   L       L ++ +  V  N+          
Sbjct: 249 KDLTDVEVYNCPNLT---------KLPTFLK-----ALPEMQLINVACNRGI-------- 286

Query: 237 PPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLG 296
                            +        + +Q + +  + +        L+   +L +L+  
Sbjct: 287 --------SGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECL 338

Query: 297 HNQIHGELTNLTKASQLSYLSLIANNFSG---SLPLISSNLTVLELSGNSLSG-PIFHFL 352
           +NQ+ G+L       +L+ L+L  N  +    +    +  +  L  + N L   P     
Sbjct: 339 YNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDA 398

Query: 353 CYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTG-------NLPTSLG 405
                                        S   + A+D S N+           L  +  
Sbjct: 399 K----------------------------SVSVMSAIDFSYNEIGSVDGKNFDPLDPTPF 430

Query: 406 SLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGEN-------EVFGNIPSWFGERFSR 458
              ++ S++L  N++S     L    + L ++++  N           +    F      
Sbjct: 431 KGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFK-NTYL 489

Query: 459 MVLLILRSNNFDG-PLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNA 517
           +  + LR N             L +L  +DL+ N+ S   P    N + +          
Sbjct: 490 LTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTL---------- 538

Query: 518 IEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLK 577
                                           +   +    D   N      P G+T   
Sbjct: 539 --------------------------------KGFGIRNQRDAQGNRTLREWPEGITLCP 566

Query: 578 AVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYL 637
           ++  L +  N     + E I    ++  +D   N         +          L  +  
Sbjct: 567 SLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKT 623

Query: 638 TGKIPSSTQLQ 648
              I     L 
Sbjct: 624 Q-DIRGCDALD 633

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  141 bits (358), Expect = 2e-35
 Identities = 64/434 (14%), Positives = 135/434 (31%), Gaps = 72/434 (16%)

Query: 249 CDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHG-----E 303
              G++  + L S   +  L L   G SG  P+  +   ++L +L LG +          
Sbjct: 67  DMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPD-AIGQLTELEVLALGSHGEKVNERLFG 125

Query: 304 LTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSG-PIFHFLCYTINETMKL 362
              ++          +  ++  +           +L  + ++  P    +  +   T+K 
Sbjct: 126 PKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKD 185

Query: 363 KFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTG-------------------NLPTS 403
             +    N +   +    M    L    + N+ F                          
Sbjct: 186 TQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLK 244

Query: 404 LGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENE--------VFGNIPSWFGER 455
             +L  L  + +        +P  LK    +  ++V  N               +     
Sbjct: 245 WDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAP-V 303

Query: 456 FSRMVLLILRSNNF-DGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFT 514
             ++ ++ +  NN    P+ T L  +  L +L+   N L G +P    +   +A++N   
Sbjct: 304 GEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLN-LA 361

Query: 515 GNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLP--MG 572
            N I       + I                          V  + F+ N     +P    
Sbjct: 362 YNQI-------TEIPANFC----------------GFTEQVENLSFAHNKLK-YIPNIFD 397

Query: 573 LTNLKAVQSLNLSYNIFTG-------RIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLT 625
             ++  + +++ SYN            +  T     ++ SI+ S N+ +    +  S+ +
Sbjct: 398 AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGS 457

Query: 626 FLNHLNLSNNYLTG 639
            L+ +NL  N LT 
Sbjct: 458 PLSSINLMGNMLTE 471

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  124 bits (313), Expect = 8e-30
 Identities = 40/281 (14%), Positives = 80/281 (28%), Gaps = 24/281 (8%)

Query: 385 NLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSG----TIPILLKNCTSLVTLDVG 440
            +  L L     +G +P ++G L+ L  L L  +          P  +    S       
Sbjct: 82  RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141

Query: 441 ENEVFGNIPSWFG-ERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPN 499
                     +   E FS ++   + S+     +            +    NN++  +  
Sbjct: 142 RMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSK 200

Query: 500 CIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLV--RI 557
            +  LT +        +      P  +         +     +    +  +  NL     
Sbjct: 201 AVMRLTKLRQFY-MGNS------PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTD 253

Query: 558 IDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFT--------GRIPETIGTMRSLESIDFS 609
           ++         LP  L  L  +Q +N++ N            +          ++ I   
Sbjct: 254 VEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIG 313

Query: 610 VNKF-TGEIPQSMSSLTFLNHLNLSNNYLTGKIPSSTQLQS 649
            N   T  +  S+  +  L  L    N L GK+P+      
Sbjct: 314 YNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIK 354

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.8 bits (109), Expect = 4e-05
 Identities = 15/134 (11%), Positives = 37/134 (27%), Gaps = 9/134 (6%)

Query: 538 LVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETI 597
           L  T     DY  +  +   ++       G       N    + L++           ++
Sbjct: 22  LSRTAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQ----PGVSL 77

Query: 598 GTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSS-----TQLQSFNA 652
            +   +  +       +G +P ++  LT L  L L ++              +   S   
Sbjct: 78  NSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ 137

Query: 653 SCFLGNNLCGAPLP 666
              +  +     + 
Sbjct: 138 KQKMRMHYQKTFVD 151

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  193 bits (492), Expect = 2e-53
 Identities = 107/645 (16%), Positives = 185/645 (28%), Gaps = 111/645 (17%)

Query: 7   ELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLGYNNFQ 65
             +  N  L+  P       ++   L+ S N      +    F  L  L FL+L      
Sbjct: 16  TYNCENLGLNEIPG---TLPNSTECLEFSFNVL--PTIQNTTFSRLINLTFLDLTRCQIY 70

Query: 66  GPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCN 125
               +  Q+   L  L L  N               L+HL      +       +     
Sbjct: 71  WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKT 130

Query: 126 LRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLDLS 185
           L  LYLG                    N + S+ L                + L  LD  
Sbjct: 131 LESLYLGS-------------------NHISSIKLPK----------GFPTEKLKVLDFQ 161

Query: 186 NNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLK-VKRDWIPPFQLIEL 244
           NN+I                LS+   ++L + +   +  N   +  ++           L
Sbjct: 162 NNAIH--------------YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSL 207

Query: 245 GLRSCDVGSRFPLWLYSQK--DLQFLDLFNSGISGTFPNRLLKSASQLYL--LDLGHNQI 300
                         L +     L      +          + +   ++ +  ++L  +  
Sbjct: 208 NFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDE-DISPAVFEGLCEMSVESINLQKHYF 266

Query: 301 HGELTN-LTKASQLSYLSLIANNFSGSLPLIS--SNLTVLELSGNSLSGPIFHFLCYTIN 357
               +N     S L  L L A + S     +   S L  L LS N            + +
Sbjct: 267 FNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLC----QISAS 322

Query: 358 ETMKLKFLFLDRNILQGKLPDCWMSY-QNLMALDLSNNKFT--GNLPTSLGSLSSLVSLH 414
               L  L +  N  + +L    +   +NL  LDLS++           L +LS L SL+
Sbjct: 323 NFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLN 382

Query: 415 LRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLP 474
           L  N          K C  L  LD+    +         +    + +L L  +  D    
Sbjct: 383 LSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE 442

Query: 475 TELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVT 534
                L  LQ L+L  N+         ++L                              
Sbjct: 443 QLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT---------------------------- 474

Query: 535 EQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIP 594
                            L  + I+  S    S       T+LK +  ++LS+N  T    
Sbjct: 475 -----------------LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI 517

Query: 595 ETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTG 639
           E +  ++ +  ++ + N  +  +P  +  L+    +NL  N L  
Sbjct: 518 EALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  188 bits (479), Expect = 1e-51
 Identities = 100/526 (19%), Positives = 166/526 (31%), Gaps = 44/526 (8%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
           L +L  LDL+ CQ++   +    +   L TL L+ N          + G   L  L    
Sbjct: 56  LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL-IFMAETALSGPKALKHLFFIQ 114

Query: 62  NNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMA 121
                     L N  +L+ L L  NH SS           L+ L    N++       M+
Sbjct: 115 TGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMS 174

Query: 122 RLCNLRRLYLGGAKLNQEISEILEIFSGCVSN-GLESLALASSSISGHLTDQLG--QFKN 178
            L     L L     +     I  I  G   +   +SL    +     +   L     ++
Sbjct: 175 SLQQATNLSLNLNGND-----IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQS 229

Query: 179 LDSLDLSNNSIVGP-------------RVLQLYLNKLHGTLSEIHFANLTKLSVFLVGAN 225
           L      +                     + L  +     +S   F   + L    + A 
Sbjct: 230 LWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN-ISSNTFHCFSGLQELDLTAT 288

Query: 226 KLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLK 285
            L+ ++    +    L +L L +    +   +   +   L  L +  +          L+
Sbjct: 289 HLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLE 347

Query: 286 SASQLYLLDLGHNQIH------GELTNLTKASQLSYLSLIANNFSGSLPLI---SSNLTV 336
           +   L  LDL H+ I        +L NL+    L  L+L  N               L +
Sbjct: 348 NLENLRELDLSHDDIETSDCCNLQLRNLS---HLQSLNLSYNEPLSLKTEAFKECPQLEL 404

Query: 337 LELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKF 396
           L+L+   L                 LK L L  ++L       +     L  L+L  N F
Sbjct: 405 LDLAFTRLKVKDAQ---SPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHF 461

Query: 397 TGN---LPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFG 453
                    SL +L  L  L L    LS        +   +  +D+  N +  +      
Sbjct: 462 PKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALS 521

Query: 454 ERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPN 499
               + + L L SN+    LP+ L  L+  + ++L  N L  T  N
Sbjct: 522 H--LKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 68.9 bits (169), Expect = 2e-12
 Identities = 43/274 (15%), Positives = 65/274 (23%), Gaps = 78/274 (28%)

Query: 389 LDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNI 448
            +  N      +P +L   +S   L    N L            +L  LD          
Sbjct: 17  YNCENLGLN-EIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLD---------- 63

Query: 449 PSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMA 508
                          L                  L  L L  N L       +    A+ 
Sbjct: 64  ---------------LTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKAL- 107

Query: 509 TVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGT 568
                                                          + + F +   S  
Sbjct: 108 -----------------------------------------------KHLFFIQTGISSI 120

Query: 569 LPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLN 628
             + L N K ++SL L  N  +            L+ +DF  N       + MSSL    
Sbjct: 121 DFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQAT 180

Query: 629 H--LNLSNNYLTGKIPSSTQLQSFNASCFLGNNL 660
           +  LNL+ N + G  P +     F +  F G   
Sbjct: 181 NLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQN 214

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  186 bits (475), Expect = 4e-51
 Identities = 109/649 (16%), Positives = 187/649 (28%), Gaps = 126/649 (19%)

Query: 6   VELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLGYNNF 64
           +     + +L   P       S+   +DLS N      + ++ F   S L +L+L     
Sbjct: 14  ITYQCMDQKLSKVPD---DIPSSTKNIDLSFNPL--KILKSYSFSNFSELQWLDLSRCEI 68

Query: 65  QGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLC 124
           +    +    L  L +L L  N   S  P  F  LT LE+L      L       + +L 
Sbjct: 69  ETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLI 128

Query: 125 NLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLD---- 180
            L++L +    ++    ++   FS   +  L  + L+ + I     + L   +       
Sbjct: 129 TLKKLNVAHNFIHS--CKLPAYFSNLTN--LVHVDLSYNYIQTITVNDLQFLRENPQVNL 184

Query: 181 SLDLSNNSI--------VGPRVLQLYL--NKLHGTLSEIHFANLTKLSVFLVGANKLTLK 230
           SLD+S N I         G ++ +L L  N     + +    NL  L V  +   +   +
Sbjct: 185 SLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE 244

Query: 231 VKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNR-LLKSASQ 289
              +   P  +  L                   D+   +   +  +    +       + 
Sbjct: 245 RNLEIFEPSIMEGL------------------CDVTIDEFRLTYTNDFSDDIVKFHCLAN 286

Query: 290 LYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIF 349
           +  + L    I   L ++ K  +   LS+I         L    L  L L+ N  S    
Sbjct: 287 VSAMSLAGVSIK-YLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSIS-- 343

Query: 350 HFLCYTINETMKLKFLFLDRNILQGKLPDC--WMSYQNLMALDLSNNKFTGNLPTSLGSL 407
               +       L +L L RN L          +   +L  LDLS N     +  +   L
Sbjct: 344 ----FKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGL 398

Query: 408 SSLVSLHLRKNRLSGTIPI-LLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRS 466
             L  L  + + L          +   L+ LD                         +  
Sbjct: 399 EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLD-------------------------ISY 433

Query: 467 NNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNS 526
            N           L  L  L +A N+      + +                         
Sbjct: 434 TNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN---------------------- 471

Query: 527 TIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSY 586
                                       +  +D SK             L  +Q LN+S+
Sbjct: 472 -------------------------TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 506

Query: 587 NIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNN 635
           N            + SL ++D S N+              L   NL+NN
Sbjct: 507 NNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNN 555

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  183 bits (467), Expect = 5e-50
 Identities = 109/643 (16%), Positives = 189/643 (29%), Gaps = 100/643 (15%)

Query: 3   PSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLGY 61
            S   +DLS   L        +NFS L  LDLS  +     +    + GL  L  L L  
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEI--ETIEDKAWHGLHHLSNLILTG 89

Query: 62  NNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEG-RIPRSM 120
           N  Q   P     LTSL++L       +S       +L  L+ L++++N +   ++P   
Sbjct: 90  NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYF 149

Query: 121 ARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLD 180
           + L NL  + L    +       L+           SL ++ + I   + DQ  Q   L 
Sbjct: 150 SNLTNLVHVDLSYNYIQTITVNDLQFLREN-PQVNLSLDMSLNPID-FIQDQAFQGIKLH 207

Query: 181 SLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQ 240
            L L               N     + +    NL  L V  +   +   +   +   P  
Sbjct: 208 ELTLRG-------------NFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSI 254

Query: 241 LIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNR-LLKSASQLYLLDLGHNQ 299
           +  L                   D+   +   +  +    +       + +  + L    
Sbjct: 255 MEGL------------------CDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS 296

Query: 300 IHGELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINET 359
           I   L ++ K  +   LS+I         L    L  L L+ N  S        +     
Sbjct: 297 IK-YLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSIS------FKKVAL 349

Query: 360 MKLKFLFLDRNILQGKLPDC--WMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRK 417
             L +L L RN L          +   +L  LDLS N     +  +   L  L  L  + 
Sbjct: 350 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQH 408

Query: 418 NRLSGTIPI-LLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNF-DGPLPT 475
           + L          +   L+ LD+       +    F    + +  L +  N+F D  L  
Sbjct: 409 STLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIF-LGLTSLNTLKMAGNSFKDNTLSN 467

Query: 476 ELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTE 535
              +   L  LDL+   L          L  +                            
Sbjct: 468 VFANTTNLTFLDLSKCQLEQISWGVFDTLHRL---------------------------- 499

Query: 536 QELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPE 595
                               ++++ S N            L ++ +L+ S+N        
Sbjct: 500 --------------------QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI 539

Query: 596 TIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLT 638
                +SL   + + N     I +    L ++         + 
Sbjct: 540 LQHFPKSLAFFNLTNNSVA-CICEHQKFLQWVKEQKQFLVNVE 581

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  172 bits (438), Expect = 4e-46
 Identities = 100/526 (19%), Positives = 177/526 (33%), Gaps = 59/526 (11%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
           L  L  L L+   +  F     +  ++L  L     +   S     +  L  L  LN+ +
Sbjct: 79  LHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL-ASLESFPIGQLITLKKLNVAH 137

Query: 62  NNFQG-PIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHL----EHLSLSYNSLEGRI 116
           N      +P    NLT+L H+ L +N+  +        L         L +S N ++  I
Sbjct: 138 NFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF-I 196

Query: 117 PRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQF 176
                +   L  L L G   N   S I++              LA   +   +  +    
Sbjct: 197 QDQAFQGIKLHELTLRG---NFNSSNIMKTC---------LQNLAGLHVHRLILGEFKDE 244

Query: 177 KNLDSLDLS-NNSIVGPRVLQLYLNKLHGT-LSEIHFANLTKLSVFLVGANKLTLKVKRD 234
           +NL+  + S    +    + +  L   +      + F  L  +S   +    +      D
Sbjct: 245 RNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK--YLED 302

Query: 235 WIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLD 294
               F+   L +  C +     L L     L+ L L  +  S +F    L S   L  LD
Sbjct: 303 VPKHFKWQSLSIIRCQLKQFPTLDLPF---LKSLTLTMNKGSISFKKVALPS---LSYLD 356

Query: 295 LGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCY 354
           L  N +                     ++S    L +++L  L+LS N       +F+  
Sbjct: 357 LSRNALS---------------FSGCCSYSD---LGTNSLRHLDLSFNGAIIMSANFMGL 398

Query: 355 TINETMKLKFLFLDRNILQGKLP-DCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSL 413
                 +L+ L    + L+       ++S + L+ LD+S      +       L+SL +L
Sbjct: 399 E-----ELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTL 453

Query: 414 HLRKNRLSGTIP-ILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGP 472
            +  N         +  N T+L  LD+ + ++       F     R+ LL +  NN    
Sbjct: 454 KMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFD-TLHRLQLLNMSHNNLLFL 512

Query: 473 LPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATV----NPFT 514
             +    L  L  LD + N +  +     H   ++A      N   
Sbjct: 513 DSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  136 bits (344), Expect = 7e-34
 Identities = 80/451 (17%), Positives = 139/451 (30%), Gaps = 83/451 (18%)

Query: 1   MLPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLG 60
                + LD+S   +             L  L L  N   ++ +   +  L+ LH   L 
Sbjct: 179 NPQVNLSLDMSLNPIDFIQDQAFQGIK-LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLI 237

Query: 61  YNNFQG---------PIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNS 111
              F+           I EGL ++ ++    L + +  S     F  L ++  +SL+  S
Sbjct: 238 LGEFKDERNLEIFEPSIMEGLCDV-TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS 296

Query: 112 LEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTD 171
           ++      + +    + L +   +L Q        F       L+SL L  +  S     
Sbjct: 297 IKY--LEDVPKHFKWQSLSIIRCQLKQ--------FPTLDLPFLKSLTLTMNKGSISFK- 345

Query: 172 QLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKV 231
                 +L  LDLS N++                     +++L   S             
Sbjct: 346 -KVALPSLSYLDLSRNAL--------------SFSGCCSYSDLGTNS------------- 377

Query: 232 KRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLY 291
                    L  L L                ++LQ LD  +S +          S  +L 
Sbjct: 378 ---------LRHLDLSFNGA-IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLL 427

Query: 292 LLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHF 351
            LD+ +                         F G      ++L  L+++GNS        
Sbjct: 428 YLDISYTNTK---------------IDFDGIFLG-----LTSLNTLKMAGNSFKDNTLS- 466

Query: 352 LCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLV 411
                  T  L FL L +  L+      + +   L  L++S+N       +    L SL 
Sbjct: 467 --NVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLS 524

Query: 412 SLHLRKNRLSGTIPILLKNCTSLVTLDVGEN 442
           +L    NR+  +  IL     SL   ++  N
Sbjct: 525 TLDCSFNRIETSKGILQHFPKSLAFFNLTNN 555

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 56.2 bits (136), Expect = 2e-08
 Identities = 25/122 (20%), Positives = 40/122 (32%), Gaps = 7/122 (5%)

Query: 550 EILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFS 609
           +I +  + ID S N          +N   +Q L+LS         +    +  L ++  +
Sbjct: 29  DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT 88

Query: 610 VNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSS----TQLQSFNASCFLGNNLCGAPL 665
            N      P S S LT L +L      L             L+  N +    N +    L
Sbjct: 89  GNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVA---HNFIHSCKL 145

Query: 666 PK 667
           P 
Sbjct: 146 PA 147

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 55.8 bits (135), Expect = 3e-08
 Identities = 16/90 (17%), Positives = 33/90 (36%)

Query: 556 RIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTG 615
           + +D S+             L  + +L L+ N      P +   + SLE++     K   
Sbjct: 59  QWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLAS 118

Query: 616 EIPQSMSSLTFLNHLNLSNNYLTGKIPSST 645
                +  L  L  LN+++N++      + 
Sbjct: 119 LESFPIGQLITLKKLNVAHNFIHSCKLPAY 148

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  176 bits (449), Expect = 1e-46
 Identities = 86/547 (15%), Positives = 166/547 (30%), Gaps = 71/547 (12%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
           L  L  L           +L      T    +   ++    +   ++    RL+  +L  
Sbjct: 346 LTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQ 405

Query: 62  NNFQ-----GPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRI 116
           +         PI +  +       +G   N   + + K   RLT L+ +  + +      
Sbjct: 406 DAINRNPEMKPIKKDSRISLKDTQIGNLTNRI-TFISKAIQRLTKLQIIYFANSPFTYDN 464

Query: 117 PRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQF 176
                   N            ++       +S      L  + L +      L D L   
Sbjct: 465 IAVDWEDANS--------DYAKQYENEELSWSNLKD--LTDVELYNCPNMTQLPDFLYDL 514

Query: 177 KNLDSLDLSNNSIVGP--------------------RVLQLYLNKLHGTLSEIHFANLTK 216
             L SL+++ N  +                      ++  +  N L    +      + K
Sbjct: 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVK 574

Query: 217 LSVFLVGANKLTLKVKRDWIPPF----QLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFN 272
           L +     NK+        +  F    +L +L L    +      +      ++ L   +
Sbjct: 575 LGLLDCVHNKVRH------LEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSH 628

Query: 273 SGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLT------KASQLSYLSLIANNFSGS 326
           + +         KS   +  +D  +N+I  E  N++      K    S ++L  N     
Sbjct: 629 NKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKF 688

Query: 327 LPLI---SSNLTVLELSGNSLSG---PIFHFLCYTINETMKLKFLFLDRNILQGKLPDCW 380
              +    S ++ + LS N ++                T  L  + L  N L     D  
Sbjct: 689 PTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFR 748

Query: 381 MS-YQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRK------NRLSGTIPILLKNCTS 433
            +    L  +D+S N F+   PT   + S L +  +R       NR+    P  +  C S
Sbjct: 749 ATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPS 807

Query: 434 LVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNL 493
           L+ L +G N+    +         ++ +L +  N       T +C      +  L  +  
Sbjct: 808 LIQLQIGSND-IRKVDEKL---TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT 863

Query: 494 SGTIPNC 500
              I  C
Sbjct: 864 Q-DIRGC 869

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  173 bits (439), Expect = 2e-45
 Identities = 90/653 (13%), Positives = 190/653 (29%), Gaps = 116/653 (17%)

Query: 19  PQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSL 78
             +   N++    LD+  +Q              R+  L+L     +G +P+ +  LT L
Sbjct: 295 NTIHSLNWNFNKELDMWGDQPGVDLD-----NNGRVTGLSLAGFGAKGRVPDAIGQLTEL 349

Query: 79  KHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPR-SMARLCNLRRLYLGGAKLN 137
           K L    +  + S   + D     +      + +     +  +     L    L    L 
Sbjct: 350 KVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDL----LQ 405

Query: 138 QEISEILEIFSGCVSNGLESLALASSSISGHLT---DQLGQFKNLDSLDLSNNSIVG--P 192
             I+   E+      + +        +++  +T     + +   L  +  +N+       
Sbjct: 406 DAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNI 465

Query: 193 RVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVG 252
            V     N  +    E    + + L                       L ++ L +C   
Sbjct: 466 AVDWEDANSDYAKQYENEELSWSNLK---------------------DLTDVELYNCPNM 504

Query: 253 SRFPLWLYSQKDLQFLDLFNSGISGTFPNRL--------LKSASQLYLLDLGHNQIHG-- 302
           ++ P +LY   +LQ L++  +        +           +  ++ +  +G+N +    
Sbjct: 505 TQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFP 564

Query: 303 ELTNLTKASQLSYLSLIANNFSGSLPLIS--SNLTVLELSGNSLSGPIFHFLCYTINETM 360
              +L K  +L  L  + N     L        LT L+L  N +   I    C   +   
Sbjct: 565 ASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIEE-IPEDFCAFTD--- 619

Query: 361 KLKFLFLDRNILQGKLPDCW--MSYQNLMALDLSNNKFTGNLPTSLGSLS-----SLVSL 413
           +++ L    N L+  +P+ +   S   + ++D S NK          S+      +  ++
Sbjct: 620 QVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTV 678

Query: 414 HLRKNRLSGTIPILLKNCTSLVTLDVGEN-------EVFGNIPSWFGERFSRMVLLILRS 466
            L  N +      L    + + T+ +  N                +      +  + LR 
Sbjct: 679 TLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYK-NTYLLTTIDLRF 737

Query: 467 NNFDG-PLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLN 525
           N             L +L  +D++ N  S + P    N + +                  
Sbjct: 738 NKLTSLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQL------------------ 778

Query: 526 STIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLS 585
                                   +   +    D   N      P G+T   ++  L + 
Sbjct: 779 ------------------------KAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIG 814

Query: 586 YNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLT 638
            N     + E +     L  +D + N        S+          L  +   
Sbjct: 815 SNDIRK-VDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  108 bits (270), Expect = 2e-24
 Identities = 42/281 (14%), Positives = 88/281 (31%), Gaps = 24/281 (8%)

Query: 385 NLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEV 444
            +  L L+     G +P ++G L+ L  L    +  + +  +      +    +  ++ +
Sbjct: 324 RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRI 383

Query: 445 FGNIPSWFGERFSRMVLL------ILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIP 498
             +    F +   R+ L       I R+             L   QI +L   N    I 
Sbjct: 384 RMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNL--TNRITFIS 441

Query: 499 NCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRII 558
             I  LT +  +  F  +   Y    N  +             +     ++ + +L   +
Sbjct: 442 KAIQRLTKLQIIY-FANSPFTY---DNIAVDWEDANSDYAKQYENEELSWSNLKDL-TDV 496

Query: 559 DFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTG---------RIPETIGTMRSLESIDFS 609
           +         LP  L +L  +QSLN++ N             R+ +   T   ++     
Sbjct: 497 ELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMG 556

Query: 610 VNKFTG-EIPQSMSSLTFLNHLNLSNNYLTGKIPSSTQLQS 649
            N         S+  +  L  L+  +N +   + +      
Sbjct: 557 YNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVK 596

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 48.7 bits (116), Expect = 6e-06
 Identities = 13/128 (10%), Positives = 34/128 (26%), Gaps = 1/128 (0%)

Query: 541 TKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTM 600
           T     DY  +  +   +D     +         +     + N   +++  +    +   
Sbjct: 264 TAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHS-LNWNFNKELDMWGDQPGVDLDNN 322

Query: 601 RSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSSTQLQSFNASCFLGNNL 660
             +  +  +     G +P ++  LT L  L+   +  T         +          + 
Sbjct: 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHR 382

Query: 661 CGAPLPKN 668
                 K 
Sbjct: 383 IRMHYKKM 390

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  161 bits (408), Expect = 2e-42
 Identities = 107/527 (20%), Positives = 176/527 (33%), Gaps = 34/527 (6%)

Query: 3   PSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLGY 61
            S   LDLS   L H       +F  L  LDLS  +     +    +  LS L  L L  
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTG 85

Query: 62  NNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSL-EGRIPRSM 120
           N  Q         L+SL+ L     + +S        L  L+ L++++N +   ++P   
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 121 ARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLD 180
           + L NL  L L   K+       L +    +     SL L+ + ++  +     +   L 
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQ-MPLLNLSLDLSLNPMN-FIQPGAFKEIRLH 203

Query: 181 SLDLSNNSIVGPRVLQLYLNKLHGT----LSEIHFANLTKLSVFLVGANKLTLKVKRDWI 236
            L L NN      V++  +  L G     L    F N   L  F   A +         +
Sbjct: 204 KLTLRNNFD-SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE--------GL 254

Query: 237 PPFQLIELGLRSCDV-GSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDL 295
               + E  L   D              ++    L +  I              L L++ 
Sbjct: 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNC 314

Query: 296 GHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLIS-SNLTVLELSGNSLSGPIFHFLCY 354
              Q         K   L  L+  +N    +   +   +L  L+LS N LS         
Sbjct: 315 KFGQFPTL-----KLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFK--GCCSQ 367

Query: 355 TINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTS-LGSLSSLVSL 413
           +   T  LK+L L  N +   +   ++  + L  LD  ++        S   SL +L+ L
Sbjct: 368 SDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426

Query: 414 HLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPL 473
            +           +    +SL  L +  N    N           +  L L     +   
Sbjct: 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 486

Query: 474 PTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATV----NPFTGN 516
           PT    L+ LQ+L++A N L          LT++  +    NP+  +
Sbjct: 487 PTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 533

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  134 bits (338), Expect = 4e-33
 Identities = 94/455 (20%), Positives = 153/455 (33%), Gaps = 39/455 (8%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
           L SL +L      L      P+ +  TL  L+++HN   +  +P +   L+ L  L+L  
Sbjct: 99  LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158

Query: 62  NNFQGPIPEGLQNLTSLK----HLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIP 117
           N  Q      L+ L  +      L L  N  +   P  F  +  L  L+L  N     + 
Sbjct: 159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVM 217

Query: 118 RSM-ARLCNLRRLYLGGAKL---NQEISEILEIFSGCVSNGLESLALASSSISGHLTDQL 173
           ++    L  L    L   +                G  +  +E   L  + +  +L D +
Sbjct: 218 KTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL--AYLDYYLDDII 275

Query: 174 GQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKR 233
             F  L ++   +          L    +       +      L +      +       
Sbjct: 276 DLFNCLTNVSSFS----------LVSVTIERVKDFSYNFGWQHLELVNCKFGQFP----- 320

Query: 234 DWIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISG-TFPNRLLKSASQLYL 292
             +    L  L   S   G+ F         L+FLDL  +G+S     ++     + L  
Sbjct: 321 -TLKLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKY 377

Query: 293 LDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLIS----SNLTVLELSGNSLSGPI 348
           LDL  N +    +N     QL +L    +N              NL  L++S        
Sbjct: 378 LDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR--- 434

Query: 349 FHFLCYTINETMKLKFLFLDRNILQGKL-PDCWMSYQNLMALDLSNNKFTGNLPTSLGSL 407
                   N    L+ L +  N  Q    PD +   +NL  LDLS  +     PT+  SL
Sbjct: 435 -VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493

Query: 408 SSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGEN 442
           SSL  L++  N+L      +    TSL  + +  N
Sbjct: 494 SSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 85.9 bits (213), Expect = 1e-17
 Identities = 76/488 (15%), Positives = 144/488 (29%), Gaps = 67/488 (13%)

Query: 176 FKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDW 235
             +  +LDLS N +                L    F +  +L V  +   ++        
Sbjct: 27  PFSTKNLDLSFNPLR--------------HLGSYSFFSFPELQVLDLSRCEIQ------T 66

Query: 236 IPP------FQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQ 289
           I          L  L L    + S           LQ L    + ++ +  N  +     
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKT 125

Query: 290 LYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIF 349
           L  L++ HN I                S     +  +L     NL  L+LS N +     
Sbjct: 126 LKELNVAHNLIQ---------------SFKLPEYFSNLT----NLEHLDLSSNKIQSIYC 166

Query: 350 HFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLP-TSLGSLS 408
             L       +    L L  N +   +         L  L L NN  + N+  T +  L+
Sbjct: 167 TDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLA 225

Query: 409 SLVSLHLRKNRLSGTIPILLKNC---TSLVTLDVGENEVFGNIPSWFGERFSRMVLLILR 465
            L    L          +   +      L  L + E  +                L  + 
Sbjct: 226 GLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVS 285

Query: 466 SNNFDGPLPTELCDLAF---LQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSF 522
           S +        + D ++    Q L+L +          + +L  +     FT N      
Sbjct: 286 SFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLT----FTSNKGGN-- 339

Query: 523 PLNSTIGPGTVTEQEL----VVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKA 578
              S +   ++   +L    +  KG  +  +     ++ +D S N    T+      L+ 
Sbjct: 340 -AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQ 397

Query: 579 VQSLNLSYNIFTGRIPETI-GTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYL 637
           ++ L+  ++        ++  ++R+L  +D S            + L+ L  L ++ N  
Sbjct: 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457

Query: 638 TGKIPSST 645
                   
Sbjct: 458 QENFLPDI 465

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 81.3 bits (201), Expect = 3e-16
 Identities = 32/111 (28%), Positives = 49/111 (44%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
           L +L+ LD+S+              S+L  L ++ N F  +F+P     L  L FL+L  
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479

Query: 62  NNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSL 112
              +   P    +L+SL+ L +  N   S     FDRLT L+ + L  N  
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 19/117 (16%), Positives = 35/117 (29%), Gaps = 7/117 (5%)

Query: 555 VRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFT 614
            + +D S N           +   +Q L+LS             ++  L ++  + N   
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 615 GEIPQSMSSLTFLNHLNLSNNYLTGKIPSS----TQLQSFNASCFLGNNLCGAPLPK 667
                + S L+ L  L      L             L+  N +    N +    LP+
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA---HNLIQSFKLPE 143

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  156 bits (396), Expect = 6e-40
 Identities = 120/662 (18%), Positives = 220/662 (33%), Gaps = 119/662 (17%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
           L +   L LS   +             L  L+L       +        L  L  L+LG 
Sbjct: 23  LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82

Query: 62  NNFQGPIPEGLQNLTSLKHLGLPFNHFSSSV--PKWFDRLTHLEHLSLSYNSLEG-RIPR 118
           +      P+  Q L  L  L L F   S +V    +F  L  L  L LS N +    +  
Sbjct: 83  SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHP 142

Query: 119 SMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKN 178
           S  +L +L+ +     ++   + E            L   +LA++S+   ++   G+  N
Sbjct: 143 SFGKLNSLKSIDFSSNQI-FLVCE--HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN 199

Query: 179 ------LDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVK 232
                 L+ LD+S N      +   + N +              +     G + +     
Sbjct: 200 PFRNMVLEILDVSGNGWT-VDITGNFSNAISK-SQAFSLILAHHIMGAGFGFHNIK---- 253

Query: 233 RDWIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYL 292
                      L   S                ++ LDL +  +  +  +R+ ++   L +
Sbjct: 254 --DPDQNTFAGLARSS----------------VRHLDLSHGFVF-SLNSRVFETLKDLKV 294

Query: 293 LDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFL 352
           L+L +N+I                + IA+     L     NL VL LS N L        
Sbjct: 295 LNLAYNKI----------------NKIADEAFYGLD----NLQVLNLSYNLLG----ELY 330

Query: 353 CYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVS 412
                   K+ ++ L +N +       +   + L  LDL +N       T++  + S+  
Sbjct: 331 SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL-----TTIHFIPSIPD 385

Query: 413 LHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGP 472
           + L  N+L      L K   +   + + EN +      +F  R   + +LIL  N F   
Sbjct: 386 IFLSGNKLV----TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSC 441

Query: 473 LPTELC-DLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPG 531
              +   +   L+ L L +N L       +         + F G                
Sbjct: 442 SGDQTPSENPSLEQLFLGENMLQLAWETELCW-------DVFEG---------------- 478

Query: 532 TVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTG 591
                               L+ ++++  + N  +   P   ++L A++ L+L+ N  T 
Sbjct: 479 --------------------LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV 518

Query: 592 RIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSSTQLQSFN 651
                +    +LE +D S N+     P    SL+    L++++N    +   ST +   N
Sbjct: 519 LSHNDL--PANLEILDISRNQLLAPNPDVFVSLS---VLDITHNKFICECELSTFINWLN 573

Query: 652 AS 653
            +
Sbjct: 574 HT 575

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  156 bits (395), Expect = 9e-40
 Identities = 129/662 (19%), Positives = 207/662 (31%), Gaps = 120/662 (18%)

Query: 8   LDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLGYNNFQG 66
                C L   PQ      +T   L LS N      V A  F  L +L  L LG      
Sbjct: 9   AFYRFCNLTQVPQ----VLNTTERLLLSFNYI--RTVTASSFPFLEQLQLLELGSQYTPL 62

Query: 67  PIPEG-LQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRI--PRSMARL 123
            I +   +NL +L+ L L  +      P  F  L HL  L L +  L   +        L
Sbjct: 63  TIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL 122

Query: 124 CNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLD 183
             L RL L                     N + SL L  S          G+  +L S+D
Sbjct: 123 KALTRLDLSK-------------------NQIRSLYLHPS---------FGKLNSLKSID 154

Query: 184 LSNNSIVGPRVLQLYLNKLHGTLSEIHFANLT--KLSVFLVGANKLTLKVKRDWIPPFQL 241
            S+N I                + E     L    LS F + AN L  +V  DW      
Sbjct: 155 FSSNQIF--------------LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNP 200

Query: 242 IE-LGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQI 300
              + L   DV         +   +     F++ IS +    L+ +   +     G + I
Sbjct: 201 FRNMVLEILDVSG-------NGWTVDITGNFSNAISKSQAFSLILA-HHIMGAGFGFHNI 252

Query: 301 HGELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETM 360
                               N F+G   L  S++  L+LS       +F           
Sbjct: 253 K---------------DPDQNTFAG---LARSSVRHLDLSHGF----VFSLNSRVFETLK 290

Query: 361 KLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRL 420
            LK L L  N +     + +    NL  L+LS N       ++   L  +  + L+KN +
Sbjct: 291 DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHI 350

Query: 421 SGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDL 480
           +       K    L TLD+ +N     I          +  + L  N         L  +
Sbjct: 351 AIIQDQTFKFLEKLQTLDLRDNA-LTTIHFI-----PSIPDIFLSGNKL-----VTLPKI 399

Query: 481 AF-LQILDLADNNLSG-TIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQEL 538
                ++ L++N L    I   +  +  +  +     N         +     ++ +  L
Sbjct: 400 NLTANLIHLSENRLENLDILYFLLRVPHLQILI-LNQNRFSSCSGDQTPSENPSLEQLFL 458

Query: 539 VVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIG 598
                     N +  L    +   ++F G        L  +Q L L++N      P    
Sbjct: 459 --------GENML-QLAWETELCWDVFEG--------LSHLQVLYLNHNYLNSLPPGVFS 501

Query: 599 TMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSSTQLQSFNASCFLGN 658
            + +L  +  + N+ T  +  +      L  L++S N L    P+     S +      N
Sbjct: 502 HLTALRGLSLNSNRLT-VLSHN-DLPANLEILDISRNQLL--APNPDVFVSLSVLDITHN 557

Query: 659 NL 660
             
Sbjct: 558 KF 559

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 76.8 bits (189), Expect = 1e-14
 Identities = 45/211 (21%), Positives = 75/211 (35%), Gaps = 31/211 (14%)

Query: 1   MLPSLVELDLSNCQLHHFPQLP---------------VANFSTLTTLDLSHNQFDNSFVP 45
            L  L  LDL +  L     +P                    T   + LS N+ +N  + 
Sbjct: 360 FLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDIL 419

Query: 46  AWVFGLSRLHFLNLGYNNFQGPIPEGL-QNLTSLKHLGLPFNHFSSSV-----PKWFDRL 99
            ++  +  L  L L  N F     +       SL+ L L  N    +         F+ L
Sbjct: 420 YFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGL 479

Query: 100 THLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLA 159
           +HL+ L L++N L    P   + L  LR L L   +L         +    +   LE L 
Sbjct: 480 SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-------VLSHNDLPANLEILD 532

Query: 160 LASSSISGHLTDQLGQFKNLDSLDLSNNSIV 190
           ++ + +          F +L  LD+++N  +
Sbjct: 533 ISRNQLL---APNPDVFVSLSVLDITHNKFI 560

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  142 bits (360), Expect = 3e-36
 Identities = 97/483 (20%), Positives = 181/483 (37%), Gaps = 35/483 (7%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLG 60
             +L  L L + +++        +  +L  LDLS N    S + +  F  LS L +LNL 
Sbjct: 49  CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL--SSLSSSWFGPLSSLKYLNLM 106

Query: 61  YNNFQG-PIPEGLQNLTSLKHLGLPFNHFSSSVPKW-FDRLTHLEHLSLSYNSLEGRIPR 118
            N +Q   +     NLT+L+ L +      S + +  F  LT L  L +   SL     +
Sbjct: 107 GNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ 166

Query: 119 SMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKN 178
           S+  + ++  L L  ++    +    +I S      L    LA    S    D++     
Sbjct: 167 SLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEV--SSP 224

Query: 179 LDSLDLSNNSIVGPRVLQL-YLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIP 237
           +  L    + +      +L  L +    LSE+ F + T   +     ++  +  +   + 
Sbjct: 225 MKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVE 284

Query: 238 PFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGH 297
              +  L +    +           + ++ + + NS +    P    +    L  LDL  
Sbjct: 285 TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSE 343

Query: 298 NQIH----GELTNLTKASQLSYLSLIANNFSGSLPLIS------SNLTVLELSGNSLSGP 347
           N +                L  L L  N+   S+           NLT L++S N+    
Sbjct: 344 NLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTLKNLTSLDISRNTF--- 399

Query: 348 IFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSL 407
             H +  +     K++FL L    ++  +  C    Q L  LD+SNN    +       L
Sbjct: 400 --HPMPDSCQWPEKMRFLNLSSTGIR-VVKTCIP--QTLEVLDVSNNNLD-SFSL---FL 450

Query: 408 SSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSN 467
             L  L++ +N+L  T+P        L+ + +  N+   ++P    +R + +  + L +N
Sbjct: 451 PRLQELYISRNKLK-TLPDAS-LFPVLLVMKISRNQ-LKSVPDGIFDRLTSLQKIWLHTN 507

Query: 468 NFD 470
            +D
Sbjct: 508 PWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  137 bits (348), Expect = 1e-34
 Identities = 106/640 (16%), Positives = 195/640 (30%), Gaps = 144/640 (22%)

Query: 3   PSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLGY 61
            +    D  +      P       + + +LDLS N+   +++        + L  L L  
Sbjct: 5   DASGVCDGRSRSFTSIPS---GLTAAMKSLDLSFNKI--TYIGHGDLRACANLQVLILKS 59

Query: 62  NNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSM- 120
           +       +   +L SL+HL L  NH SS    WF  L+ L++L+L  N  +     S+ 
Sbjct: 60  SRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLF 119

Query: 121 ARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLD 180
             L NL+ L +G  +   EI      F+G  S  L  L + + S+  + +  L   +++ 
Sbjct: 120 PNLTNLQTLRIGNVETFSEIRR--IDFAGLTS--LNELEIKALSLRNYQSQSLKSIRDIH 175

Query: 181 SLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQ 240
            L L  +                  L EI    L+ +    +    L             
Sbjct: 176 HLTLHLSES--------------AFLLEIFADILSSVRYLELRDTNLA------RFQFSP 215

Query: 241 LIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQI 300
           L    + S       P+   + +     D   + +      R +   S++   D   N +
Sbjct: 216 LPVDEVSS-------PMKKLAFRGSVLTDESFNELLKLL--RYILELSEVEFDDCTLNGL 266

Query: 301 HGELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETM 360
                         +    ++  S    + +  +  L +        +F+ L    +   
Sbjct: 267 ------------GDFNPSESDVVSELGKVETVTIRRLHIPQFY----LFYDLSTVYSLLE 310

Query: 361 KLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNL---PTSLGSLSSLVSLHLRK 417
           K+K + ++ + +           ++L  LDLS N             G+  SL +L L +
Sbjct: 311 KVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQ 370

Query: 418 NRLS--GTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPT 475
           N L        +L    +L +LD+                          S N   P+P 
Sbjct: 371 NHLRSMQKTGEILLTLKNLTSLDI--------------------------SRNTFHPMPD 404

Query: 476 ELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTE 535
                  ++ L+L+   +   +  C                                   
Sbjct: 405 SCQWPEKMRFLNLSSTGIR-VVKTC----------------------------------- 428

Query: 536 QELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPE 595
                          I   + ++D S N    +  + L  L   Q L +S N     +P+
Sbjct: 429 ---------------IPQTLEVLDVSNNNLD-SFSLFLPRL---QELYISRNKLK-TLPD 468

Query: 596 TIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNN 635
                  L  +  S N+           LT L  + L  N
Sbjct: 469 A-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  136 bits (344), Expect = 4e-34
 Identities = 86/510 (16%), Positives = 174/510 (34%), Gaps = 43/510 (8%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLG 60
             ++  LDLS  ++ +     +   + L  L L  ++   + +    F  L  L  L+L 
Sbjct: 25  TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI--NTIEGDAFYSLGSLEHLDLS 82

Query: 61  YNNFQGPIPEGLQNLTSLKHLGLPFNHFSS-SVPKWFDRLTHLEHLSLSYNSLEGRIPRS 119
            N+           L+SLK+L L  N + +  V   F  LT+L+ L +        I R 
Sbjct: 83  DNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI 142

Query: 120 M-ARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKN 178
             A L +L  L +    L    S+ L+         +  L L  S  +  L        +
Sbjct: 143 DFAGLTSLNELEIKALSLRNYQSQSLKSIR-----DIHHLTLHLSESAFLLEIFADILSS 197

Query: 179 LDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSV---FLVGANKLTLKVKRDW 235
           +  L+L + ++   +   L ++++   + ++ F            L+   +  L++    
Sbjct: 198 VRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE 257

Query: 236 IPPFQLIELGLRSCDVGSRFP-LWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLD 294
                L  LG  +         L       ++ L +    +     + +     ++  + 
Sbjct: 258 FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLF-YDLSTVYSLLEKVKRIT 316

Query: 295 LGHNQIHG-------ELTNLTK----ASQLSYLSLIANNFSGSLPLISSNLTVLELSGNS 343
           + ++++          L +L       + +    L  +   G+ P    +L  L LS N 
Sbjct: 317 VENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWP----SLQTLVLSQNH 372

Query: 344 LSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTS 403
           L           +     L  L + RN     +PD     + +  L+LS+      + T 
Sbjct: 373 LR--SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTC 428

Query: 404 LGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLI 463
           +    +L  L +  N L  +  + L     L  L +  N++     +     F  ++++ 
Sbjct: 429 I--PQTLEVLDVSNNNLD-SFSLFL---PRLQELYISRNKLKTLPDASL---FPVLLVMK 479

Query: 464 LRSNNFDGPLPTELCDLAFLQILDLADNNL 493
           +  N            L  LQ + L  N  
Sbjct: 480 ISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 95.9 bits (239), Expect = 8e-21
 Identities = 94/595 (15%), Positives = 166/595 (27%), Gaps = 115/595 (19%)

Query: 49  FGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLS 108
                    +    +F   IP GL    ++K L L FN  +           +L+ L L 
Sbjct: 2   LSCDASGVCDGRSRSFTS-IPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILK 58

Query: 109 YNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGH 168
            + +      +   L +L  L L    L   +S     F    S  L+ L L  +     
Sbjct: 59  SSRINTIEGDAFYSLGSLEHLDLSDNHL-SSLSS--SWFGPLSS--LKYLNLMGNPYQTL 113

Query: 169 LTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLT 228
               L  F NL +L          + L++   +    +  I FA LT L+   + A  L 
Sbjct: 114 GVTSL--FPNLTNL----------QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161

Query: 229 LKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSAS 288
                       L  +                  +D+  L L  S  +           S
Sbjct: 162 N------YQSQSLKSI------------------RDIHHLTLHLSESA-FLLEIFADILS 196

Query: 289 QLYLLDLGHNQIHG-ELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGP 347
            +  L+L    +   + + L      S +  +A   S       + L  L      LS  
Sbjct: 197 SVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV 256

Query: 348 IFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSL 407
            F                  + +          +    +  L +       +L T    L
Sbjct: 257 EFDDCTL-------NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLL 309

Query: 408 SSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEV--FGNIPSWFGERFSRMVLLILR 465
             +  + +  +++        ++  SL  LD+ EN +       S     +  +  L+L 
Sbjct: 310 EKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLS 369

Query: 466 SNNFD--GPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFP 523
            N+          L  L  L  LD++ N     +P+       M  +N  +   I     
Sbjct: 370 QNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLN-LSSTGIRVVKT 427

Query: 524 LNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLN 583
                                      I   + ++D S N    +  + L  L   Q L 
Sbjct: 428 --------------------------CIPQTLEVLDVSNNNLD-SFSLFLPRL---QELY 457

Query: 584 LSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLT 638
           +S N               L+++  +                 L  + +S N L 
Sbjct: 458 ISRN--------------KLKTLPDASL------------FPVLLVMKISRNQLK 486

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 91.7 bits (228), Expect = 1e-19
 Identities = 59/363 (16%), Positives = 121/363 (33%), Gaps = 25/363 (6%)

Query: 311 SQLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSG-PIFHFLCYTINETMKLKFLFLDR 369
                    + +F+     +++ +  L+LS N ++                 L+ L L  
Sbjct: 5   DASGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACA-----NLQVLILKS 59

Query: 370 NILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSG-TIPILL 428
           + +     D + S  +L  LDLS+N  +    +  G LSSL  L+L  N      +  L 
Sbjct: 60  SRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLF 119

Query: 429 KNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDL 488
            N T+L TL +G  E F  I        + +  L +++ +        L  +  +  L L
Sbjct: 120 PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL 179

Query: 489 ADNNLSGTIPNCIHNLTA----------MATVNPFTGNAIEYSFPL------NSTIGPGT 532
             +  +  +      L++          +A          E S P+       S +   +
Sbjct: 180 HLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDES 239

Query: 533 VTEQELVVTKGVAADYNEILNLV--RIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFT 590
             E   ++   +     E  +     + DF+ +       +G      ++ L++      
Sbjct: 240 FNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLF 299

Query: 591 GRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSSTQLQSF 650
             +      +  ++ I    +K           L  L  L+LS N +  +   ++  +  
Sbjct: 300 YDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGA 359

Query: 651 NAS 653
             S
Sbjct: 360 WPS 362

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 55.1 bits (133), Expect = 5e-08
 Identities = 37/272 (13%), Positives = 90/272 (33%), Gaps = 52/272 (19%)

Query: 389 LDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNI 448
            D  +  FT ++P+ L   +++ SL L  N+++      L+ C +L  L +  +      
Sbjct: 10  CDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR----- 61

Query: 449 PSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMA 508
                       +  +  + F          L  L+ LDL+DN+LS    +    L+++ 
Sbjct: 62  ------------INTIEGDAFYS--------LGSLEHLDLSDNHLSSLSSSWFGPLSSLK 101

Query: 509 TVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGT 568
            +N   GN  + +  + S                         L  ++ +          
Sbjct: 102 YLN-LMGNPYQ-TLGVTSLFPN---------------------LTNLQTLRIGNVETFSE 138

Query: 569 LPMG-LTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFL 627
           +       L ++  L +          +++ ++R +  +   +++    +      L+ +
Sbjct: 139 IRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSV 198

Query: 628 NHLNLSNNYLTGKIPSSTQLQSFNASCFLGNN 659
            +L L +  L     S   +   ++       
Sbjct: 199 RYLELRDTNLARFQFSPLPVDEVSSPMKKLAF 230

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  134 bits (340), Expect = 5e-34
 Identities = 105/496 (21%), Positives = 178/496 (35%), Gaps = 105/496 (21%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
           L  +  L      +       V   + LT ++ S+NQ  +  +   +  L++L  + +  
Sbjct: 45  LDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTD--ITP-LKNLTKLVDILMNN 99

Query: 62  NNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMA 121
           N      P  L NLT+L  L L  N  +   P     LT+L  L LS N++      +++
Sbjct: 100 NQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALS 153

Query: 122 RLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDS 181
            L +L++L  G    NQ ++++  + +   +  LE L ++S+ +S      L +  NL+S
Sbjct: 154 GLTSLQQLSFG----NQ-VTDLKPL-ANLTT--LERLDISSNKVSD--ISVLAKLTNLES 203

Query: 182 LDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQL 241
           L  +NN I                        LT L    +  N+L        I     
Sbjct: 204 LIATNNQIS----------------DITPLGILTNLDELSLNGNQLKD------IGTLA- 240

Query: 242 IELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIH 301
                              S  +L  LDL N+ IS   P   L   ++L  L LG NQI 
Sbjct: 241 -------------------SLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQIS 278

Query: 302 GELTNLTKASQLSYLSLIANNFSGSLPLIS-SNLTVLELSGNSLSGPIFHFLCYTINETM 360
             ++ L   + L+ L L  N      P+ +  NLT L L  N++S               
Sbjct: 279 N-ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP----------- 326

Query: 361 KLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRL 420
            +  L                    L  L   NNK +    +SL +L+++  L    N++
Sbjct: 327 -VSSL------------------TKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQI 365

Query: 421 SGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDL 480
           S   P+   N T +  L + +        ++        +   +++       P  + D 
Sbjct: 366 SDLTPL--ANLTRITQLGLNDQAWTNAPVNYKAN---VSIPNTVKNVTGALIAPATISDG 420

Query: 481 AFLQILDLADNNLSGT 496
                 D+  N  S T
Sbjct: 421 GSYTEPDITWNLPSYT 436

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  108 bits (272), Expect = 4e-25
 Identities = 94/496 (18%), Positives = 168/496 (33%), Gaps = 95/496 (19%)

Query: 155 LESLALASSSISGHLTDQLGQFKNLDSLDLSNNSIVGP---------RVLQLYLNKLHGT 205
                L  ++++  ++        + +L      I              +    N+L   
Sbjct: 26  KMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI 83

Query: 206 LSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKDL 265
                  NLTKL   L+  N++             +  L                +  +L
Sbjct: 84  ---TPLKNLTKLVDILMNNNQIA-----------DITPLA---------------NLTNL 114

Query: 266 QFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSG 325
             L LFN+ I+   P   LK+ + L  L+L  N I   ++ L+  + L  LS   N  + 
Sbjct: 115 TGLTLFNNQITDIDP---LKNLTNLNRLELSSNTISD-ISALSGLTSLQQLSF-GNQVTD 169

Query: 326 SLPLIS-SNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQ 384
             PL + + L  L++S N +S          + +   L+ L    N +    P   ++  
Sbjct: 170 LKPLANLTTLERLDISSNKVSDISV------LAKLTNLESLIATNNQISDITPLGILT-- 221

Query: 385 NLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEV 444
           NL  L L+ N+       +L SL++L  L L  N++S   P  L   T L  L +G N++
Sbjct: 222 NLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI 277

Query: 445 FGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNL 504
             NI        + +  L L  N  +    + + +L  L  L L  NN+S   P  + +L
Sbjct: 278 -SNISPL--AGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDISP--VSSL 330

Query: 505 TAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNL 564
           T +  +  F  N +     L +                         L  +  +    N 
Sbjct: 331 TKLQRLF-FYNNKVSDVSSLAN-------------------------LTNINWLSAGHNQ 364

Query: 565 FSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSL 624
            S   P  L NL  +  L L+   +T         +    ++           P ++S  
Sbjct: 365 ISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI--APATISDG 420

Query: 625 TFLNHLNLSNNYLTGK 640
                 +++ N  +  
Sbjct: 421 GSYTEPDITWNLPSYT 436

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  116 bits (294), Expect = 1e-28
 Identities = 84/417 (20%), Positives = 148/417 (35%), Gaps = 74/417 (17%)

Query: 29  LTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHF 88
             TL       +  F  A    L+      L   +    +    + L S+  L +     
Sbjct: 2   AATLATLPAPINQIFPDA---DLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKV 56

Query: 89  SSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFS 148
           +S   +  + LT+LE+L+L+ N +    P  ++ L  L  LY+G  K+       +    
Sbjct: 57  AS--IQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI-----TDISALQ 107

Query: 149 GCVSNGLESLALASSSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSE 208
              +  L  L L   +IS      L     + SL+L  N  +                  
Sbjct: 108 NLTN--LRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLS---------------DL 148

Query: 209 IHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQFL 268
              +N+T L+   V  +K+        + P       L                  L  L
Sbjct: 149 SPLSNMTGLNYLTVTESKVKD------VTPIA----NLTD----------------LYSL 182

Query: 269 DLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLP 328
            L  + I    P   L S + L+      NQI   +T +   ++L+ L +  N  +   P
Sbjct: 183 SLNYNQIEDISP---LASLTSLHYFTAYVNQITD-ITPVANMTRLNSLKIGNNKITDLSP 238

Query: 329 LIS-SNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLM 387
           L + S LT LE+  N +S          + +  KLK L +  N +         +   L 
Sbjct: 239 LANLSQLTWLEIGTNQISDIN------AVKDLTKLKMLNVGSNQISD--ISVLNNLSQLN 290

Query: 388 ALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEV 444
           +L L+NN+        +G L++L +L L +N ++   P  L + + + + D     +
Sbjct: 291 SLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  106 bits (266), Expect = 5e-25
 Identities = 65/399 (16%), Positives = 142/399 (35%), Gaps = 55/399 (13%)

Query: 241 LIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQI 300
              L      +   FP       +     L  + ++        +    +  L +   ++
Sbjct: 2   AATLATLPAPINQIFPD--ADLAEGIRAVLQKASVTDVVT---QEELESITKLVVAGEKV 56

Query: 301 HGELTNLTKASQLSYLSLIANNFSGSLPLIS-SNLTVLELSGNSLSGPIFHFLCYTINET 359
              +  +   + L YL+L  N  +   PL +   LT L +  N ++          +   
Sbjct: 57  A-SIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISA------LQNL 109

Query: 360 MKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNR 419
             L+ L+L+ + +    P   ++   + +L+L  N    +  + L +++ L  L + +++
Sbjct: 110 TNLRELYLNEDNISDISPLANLT--KMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESK 166

Query: 420 LSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCD 479
           +    PI   N T L +L +  N++    P       + +       N      P  + +
Sbjct: 167 VKDVTPI--ANLTDLYSLSLNYNQIEDISPL---ASLTSLHYFTAYVNQITDITP--VAN 219

Query: 480 LAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELV 539
           +  L  L + +N ++   P  + NL+ +  +     N I     +               
Sbjct: 220 MTRLNSLKIGNNKITDLSP--LANLSQLTWLE-IGTNQISDINAVKD------------- 263

Query: 540 VTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGT 599
                       L  +++++   N  S      L NL  + SL L+ N       E IG 
Sbjct: 264 ------------LTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGG 309

Query: 600 MRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLT 638
           + +L ++  S N  T   P  ++SL+ ++  + +N  + 
Sbjct: 310 LTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  105 bits (264), Expect = 8e-25
 Identities = 71/393 (18%), Positives = 144/393 (36%), Gaps = 57/393 (14%)

Query: 265 LQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFS 324
              L    + I+  FP       ++     L    +   +    +   ++ L +     +
Sbjct: 2   AATLATLPAPINQIFP---DADLAEGIRAVLQKASVTD-VVTQEELESITKLVVAGEKVA 57

Query: 325 GSLPLIS--SNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMS 382
            S+  I   +NL  L L+GN ++          ++  +KL  L++  N +         +
Sbjct: 58  -SIQGIEYLTNLEYLNLNGNQITDISP------LSNLVKLTNLYIGTNKI--TDISALQN 108

Query: 383 YQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGEN 442
             NL  L L+ +  +    + L +L+ + SL+L  N     +  L  N T L  L V E+
Sbjct: 109 LTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSDLSPL-SNMTGLNYLTVTES 165

Query: 443 EVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIH 502
           +V  ++        + +  L L  N  +    + L  L  L       N ++   P  + 
Sbjct: 166 KV-KDVTPI--ANLTDLYSLSLNYNQIEDI--SPLASLTSLHYFTAYVNQITDITP--VA 218

Query: 503 NLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSK 562
           N+T + ++     N I    PL +                         L+ +  ++   
Sbjct: 219 NMTRLNSLK-IGNNKITDLSPLAN-------------------------LSQLTWLEIGT 252

Query: 563 NLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMS 622
           N  S      + +L  ++ LN+  N  +      +  +  L S+  + N+   E  + + 
Sbjct: 253 NQISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIG 308

Query: 623 SLTFLNHLNLSNNYLTGKIPSS--TQLQSFNAS 653
            LT L  L LS N++T   P +  +++ S + +
Sbjct: 309 GLTNLTTLFLSQNHITDIRPLASLSKMDSADFA 341

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  104 bits (262), Expect = 1e-24
 Identities = 73/350 (20%), Positives = 133/350 (38%), Gaps = 52/350 (14%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
           L S+ +L ++  ++       +   + L  L+L+ NQ  +  +   +  L +L  L +G 
Sbjct: 43  LESITKLVVAGEKVASIQ--GIEYLTNLEYLNLNGNQITD--ISP-LSNLVKLTNLYIGT 97

Query: 62  NNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMA 121
           N         LQNLT+L+ L L  ++ S   P     LT +  L+L  N         ++
Sbjct: 98  NKIT--DISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLS-DLSPLS 152

Query: 122 RLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDS 181
            +  L  L +  +K+       +   +      L SL+L  + I       L    +L  
Sbjct: 153 NMTGLNYLTVTESKVKD-----VTPIANLTD--LYSLSLNYNQIEDI--SPLASLTSLHY 203

Query: 182 LDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPF-- 239
                N I                      AN+T+L+   +G NK+T       + P   
Sbjct: 204 FTAYVNQITDI----------------TPVANMTRLNSLKIGNNKITD------LSPLAN 241

Query: 240 --QLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGH 297
             QL  L + +  +     +       L+ L++ ++ IS       L + SQL  L L +
Sbjct: 242 LSQLTWLEIGTNQISDINAVK--DLTKLKMLNVGSNQISDISV---LNNLSQLNSLFLNN 296

Query: 298 NQIHGE-LTNLTKASQLSYLSLIANNFSGSLPLIS-SNLTVLELSGNSLS 345
           NQ+  E +  +   + L+ L L  N+ +   PL S S +   + +   + 
Sbjct: 297 NQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  100 bits (251), Expect = 5e-23
 Identities = 88/446 (19%), Positives = 158/446 (35%), Gaps = 102/446 (22%)

Query: 75  LTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGA 134
             +L  L  P N            L       L   S+   +      L ++ +L + G 
Sbjct: 2   AATLATLPAPINQIFP-----DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAG- 53

Query: 135 KLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLDLSNNSIVGPRV 194
                               + S+              +    NL+ L+L+ N I     
Sbjct: 54  ------------------EKVASI------------QGIEYLTNLEYLNLNGNQITDI-- 81

Query: 195 LQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSR 254
                            +NL KL+   +G NK+T       I   Q +            
Sbjct: 82  --------------SPLSNLVKLTNLYIGTNKITD------ISALQNL------------ 109

Query: 255 FPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLS 314
                    +L+ L L    IS   P   L + +++Y L+LG N    +L+ L+  + L+
Sbjct: 110 --------TNLRELYLNEDNISDISP---LANLTKMYSLNLGANHNLSDLSPLSNMTGLN 158

Query: 315 YLSLIANNFSGSLPLIS-SNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQ 373
           YL++  +      P+ + ++L  L L+ N +           +     L +     N + 
Sbjct: 159 YLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDIS------PLASLTSLHYFTAYVNQIT 212

Query: 374 GKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTS 433
              P   M+   L +L + NNK T    + L +LS L  L +  N++S      +K+ T 
Sbjct: 213 DITPVANMT--RLNSLKIGNNKITD--LSPLANLSQLTWLEIGTNQISDINA--VKDLTK 266

Query: 434 LVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNL 493
           L  L+VG N++  +I        S++  L L +N         +  L  L  L L+ N++
Sbjct: 267 LKMLNVGSNQI-SDISVL--NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 323

Query: 494 SGTIPNCIHNLTAMATVNPFTGNAIE 519
           +   P  + +L+ M + + F    I+
Sbjct: 324 TDIRP--LASLSKMDSAD-FANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 57.9 bits (141), Expect = 4e-09
 Identities = 50/276 (18%), Positives = 84/276 (30%), Gaps = 70/276 (25%)

Query: 386 LMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVF 445
              L           P     L+  +   L+K  ++  +    +   S+  L V   +V 
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKV- 56

Query: 446 GNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLT 505
            +I     E  + +  L L  N      P  L +L  L  L +  N +  T  + + NLT
Sbjct: 57  ASIQGI--EYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI--TDISALQNLT 110

Query: 506 AMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLF 565
            +                                                R +  +++  
Sbjct: 111 NL------------------------------------------------RELYLNEDNI 122

Query: 566 SGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLT 625
           S   P  L NL  + SLNL  N         +  M  L  +  + +K     P  +++LT
Sbjct: 123 SDISP--LANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVTP--IANLT 177

Query: 626 FLNHLNLSNNYLTGKIPSS--TQLQSFNASCFLGNN 659
            L  L+L+ N +    P +  T L  F        N
Sbjct: 178 DLYSLSLNYNQIEDISPLASLTSLHYFT----AYVN 209

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  115 bits (290), Expect = 1e-27
 Identities = 85/471 (18%), Positives = 155/471 (32%), Gaps = 83/471 (17%)

Query: 7   ELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLGYNNFQ 65
                N  LH  P+LP    + +  +DLS N    + +    F  L  L FL +      
Sbjct: 14  NAICINRGLHQVPELP----AHVNYVDLSLNSI--AELNETSFSRLQDLQFLKVEQQTPG 67

Query: 66  GPIPEGL-QNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSL-EGRIPRSM-AR 122
             I     + L+SL  L L +N F       F+ L +LE L+L+  +L    +  +    
Sbjct: 68  LVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKP 127

Query: 123 LCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSL 182
           L +L  L L                     N ++ +  A              F N+   
Sbjct: 128 LTSLEMLVLRD-------------------NNIKKIQPA------------SFFLNMRRF 156

Query: 183 DLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLI 242
                      VL L  NK+  ++ E    N       L+  + +TL             
Sbjct: 157 ----------HVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITL------------- 192

Query: 243 ELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHG 302
              +    +G       +    +  LDL  +G   +   R   + +   +  L  +  + 
Sbjct: 193 -QDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYN 251

Query: 303 ELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGN---SLSGPIFHFLCYTINET 359
             ++       ++       F G   L +S +   +LS +   +L   +F          
Sbjct: 252 MGSSF---GHTNFKDPDNFTFKG---LEASGVKTCDLSKSKIFALLKSVFSHFT------ 299

Query: 360 MKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNR 419
             L+ L L +N +     + +    +L+ L+LS N           +L  L  L L  N 
Sbjct: 300 -DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNH 358

Query: 420 LSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFD 470
           +            +L  L +  N+   ++P    +R + +  + L +N +D
Sbjct: 359 IRALGDQSFLGLPNLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  113 bits (284), Expect = 7e-27
 Identities = 81/424 (19%), Positives = 136/424 (32%), Gaps = 56/424 (13%)

Query: 3   PSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLGY 61
             +  +DLS   +    +   +    L  L +         +    F GLS L  L L Y
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLV-IRNNTFRGLSSLIILKLDY 88

Query: 62  NNFQGPIPEG-LQNLTSLKHLGLPFNHFSSSV--PKWFDRLTHLEHLSLSYNSLEGRIPR 118
           N F   +  G    L +L+ L L   +   +V    +F  LT LE L L  N+++   P 
Sbjct: 89  NQFLQ-LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA 147

Query: 119 SM-ARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFK 177
           S    +     L L     N+  S   E            L L+S ++       + ++ 
Sbjct: 148 SFFLNMRRFHVLDLTF---NKVKSICEEDLLNFQGKHFTLLRLSSITLQ-----DMNEYW 199

Query: 178 NLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIP 237
                  +         L L  N    ++++  F  +    +        +L +   +  
Sbjct: 200 LGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKI-------QSLILSNSYNM 252

Query: 238 PFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGH 297
                    +  D  +   L       ++  DL  S I       +    + L  L L  
Sbjct: 253 GSSFGHTNFKDPDNFTFKGL---EASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQ 308

Query: 298 NQIHGELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGN---SLSGPIFHFLCY 354
           N+I+                +  N F G      ++L  L LS N   S+   +F  L  
Sbjct: 309 NEIN---------------KIDDNAFWG-----LTHLLKLNLSQNFLGSIDSRMFENL-- 346

Query: 355 TINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLH 414
                 KL+ L L  N ++      ++   NL  L L  N+           L+SL  + 
Sbjct: 347 -----DKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIW 401

Query: 415 LRKN 418
           L  N
Sbjct: 402 LHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  103 bits (259), Expect = 1e-23
 Identities = 71/344 (20%), Positives = 115/344 (33%), Gaps = 36/344 (10%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLG 60
           L SL+ L L   Q            + L  L L+    D + +    F  L+ L  L L 
Sbjct: 78  LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLR 137

Query: 61  YNNFQGPIPEGL-QNLTSLKHLGLPFNHFSSSVPKWFDRLT--HLEHLSLSYNSL----- 112
            NN +   P     N+     L L FN   S   +        H   L LS  +L     
Sbjct: 138 DNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNE 197

Query: 113 ---EGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHL 169
                    +  +  ++  L L G    + +++    F       ++SL L++S   G  
Sbjct: 198 YWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRF--FDAIAGTKIQSLILSNSYNMGSS 255

Query: 170 TDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTL 229
                 FK+ D+         G +   L  +K+   L +  F++ T L    +  N++  
Sbjct: 256 FGH-TNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN- 312

Query: 230 KVKRDWIPP------FQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRL 283
                 I          L++L L    +GS       +   L+ LDL  + I     ++ 
Sbjct: 313 -----KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR-ALGDQS 366

Query: 284 LKSASQLYLLDLGHNQI----HGELTNLTKASQLSYLSLIANNF 323
                 L  L L  NQ+     G    LT    L  + L  N +
Sbjct: 367 FLGLPNLKELALDTNQLKSVPDGIFDRLTS---LQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 74.4 bits (183), Expect = 4e-14
 Identities = 61/361 (16%), Positives = 117/361 (32%), Gaps = 50/361 (13%)

Query: 293 LDLGHNQIHG-ELTNLTKASQLSYLSLIANNFSGSLPLIS----SNLTVLELSGN---SL 344
           +DL  N I     T+ ++   L +L +        +   +    S+L +L+L  N    L
Sbjct: 35  VDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQL 94

Query: 345 SGPIFHFLCYTINETMKLKFLFLDRNILQGKL--PDCWMSYQNLMALDLSNNKFTGNLPT 402
               F+ L         L+ L L +  L G +   + +    +L  L L +N      P 
Sbjct: 95  ETGAFNGL-------ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA 147

Query: 403 SL-GSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVL 461
           S   ++     L L  N++       L N        +        + S   +  +   L
Sbjct: 148 SFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL-------RLSSITLQDMNEYWL 200

Query: 462 LILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNL---TAMATVNPFTGNAI 518
              +  N              +  LDL+ N    ++     +    T + ++       +
Sbjct: 201 GWEKCGNPFK--------NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNM 252

Query: 519 EYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGL-TNLK 577
             SF   +   P   T + L  +             V+  D SK+     L   + ++  
Sbjct: 253 GSSFGHTNFKDPDNFTFKGLEASG------------VKTCDLSKSKIF-ALLKSVFSHFT 299

Query: 578 AVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYL 637
            ++ L L+ N            +  L  ++ S N       +   +L  L  L+LS N++
Sbjct: 300 DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHI 359

Query: 638 T 638
            
Sbjct: 360 R 360

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  113 bits (285), Expect = 1e-26
 Identities = 86/473 (18%), Positives = 160/473 (33%), Gaps = 48/473 (10%)

Query: 3   PSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLGY 61
                L++S   +       + + S L  L +SHN+    ++   VF     L +L+L +
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRI--QYLDISVFKFNQELEYLDLSH 78

Query: 62  NNFQGPIPEGLQNLTSLKHLGLPFNHFSS-SVPKWFDRLTHLEHLSLSYNSLEGRIPRSM 120
           N     I        +LKHL L FN F +  + K F  ++ L+ L LS   LE      +
Sbjct: 79  NKLVK-IS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPI 135

Query: 121 ARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLD 180
           A L   + L + G    ++     E      +  L  +   +      L   +    NL+
Sbjct: 136 AHLNISKVLLVLGETYGEKED--PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLE 193

Query: 181 SLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQ 240
             ++            L +     T  ++    L  +        ++   V    +  F 
Sbjct: 194 LSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS 253

Query: 241 LIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQI 300
           +  + L+       F     S K L    + +        + + +  S + + +   +  
Sbjct: 254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG-FPQSYIYEIFSNMNIKNFTVSGT 312

Query: 301 H-------GELTNLT------------------KASQLSYLSLIANNFSGSLPLIS---- 331
                    +++                       ++L  L L  N     L  I+    
Sbjct: 313 RMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTT 371

Query: 332 --SNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMAL 389
              +L  L++S NS+S       C   + T  L  L +  NIL   +  C      +  L
Sbjct: 372 QMKSLQQLDISQNSVSYDEKKGDC---SWTKSLLSLNMSSNILTDTIFRCLPP--RIKVL 426

Query: 390 DLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGEN 442
           DL +NK   ++P  +  L +L  L++  N+L      +    TSL  + +  N
Sbjct: 427 DLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 95.3 bits (237), Expect = 9e-21
 Identities = 87/483 (18%), Positives = 152/483 (31%), Gaps = 68/483 (14%)

Query: 30  TTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFS 89
             +D S N      VP  +    +   LN+  N         + +L+ L+ L +  N   
Sbjct: 3   FLVDRSKNGL--IHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ 58

Query: 90  SSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSG 149
                 F     LE+L LS+N L      S     NL+ L L                  
Sbjct: 59  YLDISVFKFNQELEYLDLSHNKLVK---ISCHPTVNLKHLDLS----------------- 98

Query: 150 CVSNGLESLALASSSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEI 209
              N  ++L +             G    L  L LS   +                 S +
Sbjct: 99  --FNAFDALPICKE---------FGNMSQLKFLGLSTTHL--------------EKSSVL 133

Query: 210 HFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLD 269
             A+L    V LV       K   + +  F    L +          +   S K +  L+
Sbjct: 134 PIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLE 193

Query: 270 LFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPL 329
           L N          L  +    +L  L   Q + +L+NLT    L+ +    N+F   L L
Sbjct: 194 LSN------IKCVLEDNKCSYFLSILAKLQTNPKLSNLT----LNNIETTWNSFIRILQL 243

Query: 330 IS-SNLTVLELSGNSLSGPI-FHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLM 387
           +  + +    +S   L G + F    Y+      L    +  ++        +  + N+ 
Sbjct: 244 VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMN 303

Query: 388 ALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGN 447
             + + +            +S  + L    N L+ T+     + T L TL +  N+    
Sbjct: 304 IKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ-LKE 362

Query: 448 IPSWFGERFSRMV---LLILRSNNFDGPLPTELCD-LAFLQILDLADNNLSGTIPNCI-H 502
           +        ++M     L +  N+         C     L  L+++ N L+ TI  C+  
Sbjct: 363 LSKIAE-MTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPP 421

Query: 503 NLT 505
            + 
Sbjct: 422 RIK 424

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 78.0 bits (192), Expect = 3e-15
 Identities = 81/469 (17%), Positives = 163/469 (34%), Gaps = 58/469 (12%)

Query: 193 RVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPP------FQLIELGL 246
            +L +  N +   L      +L+KL + ++  N++       ++         +L  L L
Sbjct: 24  TILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQ------YLDISVFKFNQELEYLDL 76

Query: 247 RSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIH-GELT 305
               +         +   L+ LDL  +        +   + SQL  L L    +    + 
Sbjct: 77  SHNKLVKISCHPTVN---LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVL 133

Query: 306 NLTKASQLSYLSLIANNFSGSLPLIS-SNLTVLELSGNSLSGPIFHFLCYTINETMKL-- 362
            +   +    L ++   +          +     L     +   FHF+     +T+    
Sbjct: 134 PIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLE 193

Query: 363 -----KFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSL---SSLVSLH 414
                  L  ++      +     +   L  L L+N + T N    +  L   +++    
Sbjct: 194 LSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS 253

Query: 415 LRKNRLSGTIP--ILLKNCTSLVTLDVG--ENEVFGNIPSWFGERFSRMVLLILRSNNFD 470
           +   +L G +       + TSL  L +    ++VFG   S+  E FS M +     +   
Sbjct: 254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR 313

Query: 471 GPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGP 530
                    ++    LD ++N L+ T+     +LT + T+     N ++      + +  
Sbjct: 314 MVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLI-LQMNQLK-ELSKIAEMTT 371

Query: 531 GTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGL-TNLKAVQSLNLSYNIF 589
                                +  ++ +D S+N  S     G  +  K++ SLN+S NI 
Sbjct: 372 Q--------------------MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNIL 411

Query: 590 TGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLT 638
           T  I   +     ++ +D   NK    IP+ +  L  L  LN+++N L 
Sbjct: 412 TDTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK 457

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 76.4 bits (188), Expect = 9e-15
 Identities = 44/242 (18%), Positives = 93/242 (38%), Gaps = 27/242 (11%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFS-----TLTTLDLSHNQFDNSFVPAWVF-GLSRLH 55
             ++    +SN +L         ++S      L+   +  + F   F  ++++   S ++
Sbjct: 246 HTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMN 303

Query: 56  FLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLE-- 113
             N   +  +         ++   HL    N  + +V +    LT LE L L  N L+  
Sbjct: 304 IKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKEL 363

Query: 114 GRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQL 173
            +I     ++ +L++L +    ++ +  +     S   S  L SL ++S+ ++  +   L
Sbjct: 364 SKIAEMTTQMKSLQQLDISQNSVSYDEKK--GDCSWTKS--LLSLNMSSNILTDTIFRCL 419

Query: 174 GQFKNLDSLDLSNNSIVGP----------RVLQLYLNKLHGTLSEIHFANLTKLSVFLVG 223
                +  LDL +N I             + L +  N+L  ++ +  F  LT L    + 
Sbjct: 420 --PPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLH 476

Query: 224 AN 225
            N
Sbjct: 477 TN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 61.8 bits (150), Expect = 4e-10
 Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 13/116 (11%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFS---TLTTLDLSHNQFDNSFVPAWVFG--LSRLHF 56
           + SL +LD+S   + +       + S   +L +L++S N   ++     +F     R+  
Sbjct: 373 MKSLQQLDISQNSVSYDE--KKGDCSWTKSLLSLNMSSNILTDT-----IFRCLPPRIKV 425

Query: 57  LNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSL 112
           L+L  N  +  IP+ +  L +L+ L +  N   S     FDRLT L+ + L  N  
Sbjct: 426 LDLHSNKIKS-IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  111 bits (280), Expect = 4e-26
 Identities = 77/344 (22%), Positives = 121/344 (35%), Gaps = 37/344 (10%)

Query: 12  NCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLGYNNFQGPIPE 70
            C    F  +P    +    LDL  N+     +    F     L  L L  N      P 
Sbjct: 17  LCHRKRFVAVPEGIPTETRLLDLGKNRI--KTLNQDEFASFPHLEELELNENIVSAVEPG 74

Query: 71  GLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLY 130
              NL +L+ LGL  N         F  L++L  L +S N +   +      L NL+ L 
Sbjct: 75  AFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLE 134

Query: 131 LGGAKLNQEISEILE-IFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLDLSNNSI 189
           +G    N  +  I    FSG  S  LE L L   +++   T+ L     L  L L + +I
Sbjct: 135 VGD---ND-LVYISHRAFSGLNS--LEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI 188

Query: 190 VGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSC 249
                           + +  F  L +L V  +        +  + +    L  L +  C
Sbjct: 189 N--------------AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC 234

Query: 250 DVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIH----GELT 305
           ++ +   L +     L+FL+L  + IS T    +L    +L  + L   Q+         
Sbjct: 235 NLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFR 293

Query: 306 NLTKASQLSYLSLIANNFSGSLPLIS----SNLTVLELSGNSLS 345
            L     L  L++  N  + +L         NL  L L  N L+
Sbjct: 294 GLNY---LRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  100 bits (250), Expect = 2e-22
 Identities = 71/398 (17%), Positives = 137/398 (34%), Gaps = 76/398 (19%)

Query: 26  FSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPF 85
            +    +     +F    VP  +   +    L+LG N  +    +   +   L+ L L  
Sbjct: 10  SAQDRAVLCHRKRF--VAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNE 65

Query: 86  NHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSM-ARLCNLRRLYLGGAKLNQEISEIL 144
           N  S+  P  F+ L +L  L L  N L+  IP  +   L NL +L +     N+ I  +L
Sbjct: 66  NIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISE---NK-IVILL 120

Query: 145 E-IFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLH 203
           + +F    +  L+SL +  + +  +++     F  L+SL            L L    L 
Sbjct: 121 DYMFQDLYN--LKSLEVGDNDLV-YISH--RAFSGLNSL----------EQLTLEKCNLT 165

Query: 204 GTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQK 263
            ++     ++L  L V  +    +       +   ++L  L +                 
Sbjct: 166 -SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL 224

Query: 264 DLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNF 323
           +L  L + +  ++   P   ++    L  L+L +N I                ++  +  
Sbjct: 225 NLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS---------------TIEGSML 268

Query: 324 SGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSY 383
              L      L  ++L G  L+                     ++    +G L       
Sbjct: 269 HE-LL----RLQEIQLVGGQLA--------------------VVEPYAFRG-LN------ 296

Query: 384 QNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLS 421
             L  L++S N+ T    +   S+ +L +L L  N L+
Sbjct: 297 -YLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 97.5 bits (243), Expect = 2e-21
 Identities = 40/190 (21%), Positives = 73/190 (38%), Gaps = 8/190 (4%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLG 60
           L SL +L L  C L   P   +++   L  L L H     + +  + F  L RL  L + 
Sbjct: 151 LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI--NAIRDYSFKRLYRLKVLEIS 208

Query: 61  YNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSM 120
           +  +   +        +L  L +   + ++        L +L  L+LSYN +       +
Sbjct: 209 HWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSML 268

Query: 121 ARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLD 180
             L  L+ + L G +L   +      F G     L  L ++ + ++           NL+
Sbjct: 269 HELLRLQEIQLVGGQL-AVVEP--YAFRGLNY--LRVLNVSGNQLTTLEESVFHSVGNLE 323

Query: 181 SLDLSNNSIV 190
           +L L +N + 
Sbjct: 324 TLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 89.8 bits (223), Expect = 4e-19
 Identities = 61/363 (16%), Positives = 118/363 (32%), Gaps = 68/363 (18%)

Query: 155 LESLALASSSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANL 214
              L L  + I     D+   F +L+ L+L+ N +                +    F NL
Sbjct: 34  TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV--------------SAVEPGAFNNL 79

Query: 215 TKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSG 274
             L    + +N+L L      IP      L                   +L  LD+  + 
Sbjct: 80  FNLRTLGLRSNRLKL------IPLGVFTGL------------------SNLTKLDISENK 115

Query: 275 ISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLISSNL 334
           I     + + +    L  L++G N +                 +    FSG L     +L
Sbjct: 116 IV-ILLDYMFQDLYNLKSLEVGDNDLV---------------YISHRAFSG-LN----SL 154

Query: 335 TVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNN 394
             L L   +L+          ++    L  L L    +       +     L  L++S+ 
Sbjct: 155 EQLTLEKCNLT----SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW 210

Query: 395 KFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGE 454
            +   +  +     +L SL +    L+    + +++   L  L++  N     I      
Sbjct: 211 PYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSMLH 269

Query: 455 RFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATV---- 510
              R+  + L         P     L +L++L+++ N L+    +  H++  + T+    
Sbjct: 270 ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDS 329

Query: 511 NPF 513
           NP 
Sbjct: 330 NPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 88.2 bits (219), Expect = 1e-18
 Identities = 65/377 (17%), Positives = 109/377 (28%), Gaps = 80/377 (21%)

Query: 264 DLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNF 323
           + + LDL  + I  T       S   L  L+L  N +                ++    F
Sbjct: 33  ETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVS---------------AVEPGAF 76

Query: 324 SGSLPLISSNLTVLELSGN---SLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCW 380
           +        NL  L L  N    +   +F  L         L  L +  N +   L   +
Sbjct: 77  NNL-----FNLRTLGLRSNRLKLIPLGVFTGL-------SNLTKLDISENKIVILLDYMF 124

Query: 381 MSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVG 440
               NL +L++ +N        +   L+SL  L L K  L+      L +   L+ L + 
Sbjct: 125 QDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLR 184

Query: 441 ENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNC 500
                  I  +  +R  R+ +L +    +   +         L  L +   NL+      
Sbjct: 185 HLN-INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLA 243

Query: 501 IHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDF 560
           + +L                                                 L R ++ 
Sbjct: 244 VRHLV-----------------------------------------------YL-RFLNL 255

Query: 561 SKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQS 620
           S N  S      L  L  +Q + L         P     +  L  ++ S N+ T      
Sbjct: 256 SYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESV 315

Query: 621 MSSLTFLNHLNLSNNYL 637
             S+  L  L L +N L
Sbjct: 316 FHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 84.4 bits (209), Expect = 2e-17
 Identities = 57/311 (18%), Positives = 111/311 (35%), Gaps = 33/311 (10%)

Query: 330 ISSNLTVLELSGNSLSG-PIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMA 388
           I +   +L+L  N +       F  +       L+ L L+ NI+    P  + +  NL  
Sbjct: 30  IPTETRLLDLGKNRIKTLNQDEFASFP-----HLEELELNENIVSAVEPGAFNNLFNLRT 84

Query: 389 LDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNI 448
           L L +N+           LS+L  L + +N++   +  + ++  +L +L+VG+N++    
Sbjct: 85  LGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYIS 144

Query: 449 PSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMA 508
              F    + +  L L   N        L  L  L +L L   N++         L  + 
Sbjct: 145 HRAF-SGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLK 203

Query: 509 TVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGT 568
            +       ++                        +  +    LNL   +  +    +  
Sbjct: 204 VLEISHWPYLDT-----------------------MTPNCLYGLNL-TSLSITHCNLTAV 239

Query: 569 LPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSM-SSLTFL 627
             + + +L  ++ LNLSYN  +      +  +  L+ I     +    +       L +L
Sbjct: 240 PYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYL 298

Query: 628 NHLNLSNNYLT 638
             LN+S N LT
Sbjct: 299 RVLNVSGNQLT 309

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  104 bits (262), Expect = 2e-24
 Identities = 64/357 (17%), Positives = 119/357 (33%), Gaps = 37/357 (10%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLG 60
                ++ +       +        +    +   ++      +PA +     ++  LNL 
Sbjct: 20  DCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM--RKLPAALLDSFRQVELLNLN 77

Query: 61  YNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSM 120
               +           +++ L + FN      P  F  +  L  L L  N L   +PR +
Sbjct: 78  DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGI 136

Query: 121 -ARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNL 179
                 L  L +    L + I +  + F    S  L++L L+S+ ++      L    +L
Sbjct: 137 FHNTPKLTTLSMSNNNL-ERIED--DTFQATTS--LQNLQLSSNRLT---HVDLSLIPSL 188

Query: 180 DSLDLSNNSI------VGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKR 233
              ++S N +      +    L    N ++  +       LT L    +  N LT     
Sbjct: 189 FHANVSYNLLSTLAIPIAVEELDASHNSIN-VVRGPVNVELTILK---LQHNNLTD---- 240

Query: 234 DWIPPF----QLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQ 289
                      L+E+ L   ++           + L+ L + N+ +     N   +    
Sbjct: 241 --TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL--NLYGQPIPT 296

Query: 290 LYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPL-ISSNLTVLELSGNSLS 345
           L +LDL HN +     N  +  +L  L L  N+   +L L     L  L LS N   
Sbjct: 297 LKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIV-TLKLSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  104 bits (262), Expect = 3e-24
 Identities = 65/403 (16%), Positives = 125/403 (31%), Gaps = 63/403 (15%)

Query: 68  IPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLR 127
           I   LQ       + +               L + + ++   +++       +     + 
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72

Query: 128 RLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLDLSNN 187
            L L   ++ +EI      F+   +  ++ L +  ++I             L  L L  N
Sbjct: 73  LLNLNDLQI-EEIDT--YAFAYAHT--IQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN 127

Query: 188 SIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLR 247
            +               +L    F N  KL+   +  N L        I           
Sbjct: 128 DLS--------------SLPRGIFHNTPKLTTLSMSNNNLE------RIEDDTFQAT--- 164

Query: 248 SCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNL 307
                            LQ L L ++ ++      L+ S   L+  ++ +N +    + L
Sbjct: 165 ---------------TSLQNLQLSSNRLT-HVDLSLIPS---LFHANVSYNLL----STL 201

Query: 308 TKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFL 367
                +  L    N+ +     ++  LT+L+L  N+L+      L Y       L  + L
Sbjct: 202 AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLT-DTAWLLNYP-----GLVEVDL 255

Query: 368 DRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPIL 427
             N L+  +   ++  Q L  L +SNN+    L      + +L  L L  N L   +   
Sbjct: 256 SYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERN 313

Query: 428 LKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFD 470
                 L  L +  N     +          +  L L  N++D
Sbjct: 314 QPQFDRLENLYLDHNS-IVTLKL---STHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 83.2 bits (206), Expect = 3e-17
 Identities = 51/355 (14%), Positives = 115/355 (32%), Gaps = 40/355 (11%)

Query: 294 DLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSG-PIFHFL 352
              +  I   L        +       + + G   +  +N  ++    +++   P     
Sbjct: 7   QPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLD 66

Query: 353 CYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVS 412
            +      +++ L L+   ++      +     +  L +  N      P    ++  L  
Sbjct: 67  SFR-----QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121

Query: 413 LHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGP 472
           L L +N LS     +  N   L TL +  N     I     +  + +  L L SN     
Sbjct: 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTH- 179

Query: 473 LPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGT 532
           +   L  +  L   +++ N LS      +    A+  ++  + N+I       + +    
Sbjct: 180 VDLSL--IPSLFHANVSYNLLST-----LAIPIAVEELD-ASHNSI-------NVVRGPV 224

Query: 533 VTE-QELVVTKGVAADYNEI--------LNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLN 583
             E   L +       +N +           +  +D S N     +      ++ ++ L 
Sbjct: 225 NVELTILKL------QHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 278

Query: 584 LSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLT 638
           +S N     +      + +L+ +D S N     + ++      L +L L +N + 
Sbjct: 279 ISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 331

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 78.5 bits (194), Expect = 1e-15
 Identities = 48/209 (22%), Positives = 75/209 (35%), Gaps = 21/209 (10%)

Query: 1   MLPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLG 60
           ++PSL   ++S   L             +  LD SHN    + V   V     L  L L 
Sbjct: 184 LIPSLFHANVSYNLLSTLAIPI-----AVEELDASHNSI--NVVRGPVN--VELTILKLQ 234

Query: 61  YNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSM 120
           +NN        L N   L  + L +N     +   F ++  LE L +S N L   +    
Sbjct: 235 HNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYG 291

Query: 121 ARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLD 180
             +  L+ L L     N  +  +           LE+L L  +SI    T +L     L 
Sbjct: 292 QPIPTLKVLDLSH---NH-LLHVERNQPQFDR--LENLYLDHNSIV---TLKLSTHHTLK 342

Query: 181 SLDLSNNSIVGPRVLQLYLNKLHGTLSEI 209
           +L LS+N      +  L+ N     + + 
Sbjct: 343 NLTLSHNDWDCNSLRALFRNVARPAVDDA 371

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  106 bits (266), Expect = 4e-24
 Identities = 74/480 (15%), Positives = 155/480 (32%), Gaps = 45/480 (9%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLG 60
                ++ +       +        +    +   ++      +PA +     ++  LNL 
Sbjct: 26  DCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM--RKLPAALLDSFRQVELLNLN 83

Query: 61  YNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSM 120
               +           +++ L + FN      P  F  +  L  L L  N L   +PR +
Sbjct: 84  DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGI 142

Query: 121 -ARLCNLRRLYLGGAKLNQEISEI-LEIFSGCVSNGLESLALASSSISGHLTDQLGQFKN 178
                 L  L +     N  +  I  + F    S  L++L L+S+ ++      L    +
Sbjct: 143 FHNTPKLTTLSMSN---NN-LERIEDDTFQATTS--LQNLQLSSNRLT---HVDLSLIPS 193

Query: 179 LDSLDLSNNSI----VGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRD 234
           L   ++S N +    +   V +L  +  H +++ +      +L++  +  N LT      
Sbjct: 194 LFHANVSYNLLSTLAIPIAVEELDAS--HNSINVVRGPVNVELTILKLQHNNLTD----- 246

Query: 235 WIPPF----QLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQL 290
                     L+E+ L   ++           + L+ L + N+ +     N   +    L
Sbjct: 247 -TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL--NLYGQPIPTL 303

Query: 291 YLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPL-ISSNLTVLELSGNSLSGPIF 349
            +LDL HN +     N  +  +L  L L  N+   +L L     L  L LS N       
Sbjct: 304 KVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIV-TLKLSTHHTLKNLTLSHNDWDCNSL 362

Query: 350 HFLCYTINETMKLKFLFLDRNILQGKL-------PDCWMSYQNLMALDLSNNKFTGNLPT 402
             L        +      D++              +    Y + +   ++       +  
Sbjct: 363 RAL---FRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQR 419

Query: 403 SLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLL 462
           + G  S+  +++  ++                  L+   NE+   +     E+  +  LL
Sbjct: 420 AQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLL 479

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  100 bits (250), Expect = 3e-22
 Identities = 67/403 (16%), Positives = 126/403 (31%), Gaps = 63/403 (15%)

Query: 68  IPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLR 127
           I   LQ       + +               L + + ++   +++       +     + 
Sbjct: 19  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 78

Query: 128 RLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLDLSNN 187
            L L   ++  EI      F+   +  ++ L +  ++I             L  L L  N
Sbjct: 79  LLNLNDLQIE-EIDT--YAFAYAHT--IQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN 133

Query: 188 SIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLR 247
            +               +L    F N  KL+   +  N L        I           
Sbjct: 134 DLS--------------SLPRGIFHNTPKLTTLSMSNNNLER------IEDDTFQAT--- 170

Query: 248 SCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNL 307
                            LQ L L ++ ++      L+ S   L+  ++ +N     L+ L
Sbjct: 171 ---------------TSLQNLQLSSNRLT-HVDLSLIPS---LFHANVSYNL----LSTL 207

Query: 308 TKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFL 367
                +  L    N+ +     ++  LT+L+L  N+L+      L Y       L  + L
Sbjct: 208 AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLT-DTAWLLNYP-----GLVEVDL 261

Query: 368 DRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPIL 427
             N L+  +   ++  Q L  L +SNN+    L      + +L  L L  N L   +   
Sbjct: 262 SYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERN 319

Query: 428 LKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFD 470
                 L  L +  N    +I +        +  L L  N++D
Sbjct: 320 QPQFDRLENLYLDHN----SIVTLKLSTHHTLKNLTLSHNDWD 358

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  104 bits (261), Expect = 8e-24
 Identities = 56/418 (13%), Positives = 118/418 (28%), Gaps = 47/418 (11%)

Query: 25  NFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGL 83
           N +      ++ +        A +      +  L+L  N         L   T L+ L L
Sbjct: 8   NGNRYKIEKVTDSSLKQ--ALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 84  PFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEI 143
             N    ++    + L+ L  L L+ N ++      +    ++  L+     +++     
Sbjct: 66  SSNVLYETLD--LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRVSCSR 118

Query: 144 LEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLH 203
                     G +++ LA++ I+       G    +  LDL  N I      +L      
Sbjct: 119 G--------QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL------ 164

Query: 204 GTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPF----QLIELGLRSCDVGSRFPLWL 259
                   A+   L    +  N +        +       +L  L L S  + +      
Sbjct: 165 -------AASSDTLEHLNLQYNFIYD------VKGQVVFAKLKTLDLSSNKL-AFMGPEF 210

Query: 260 YSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLI 319
            S   + ++ L N+ +        L+ +  L   DL  N  H        +      ++ 
Sbjct: 211 QSAAGVTWISLRNNKLV-LIEK-ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268

Query: 320 ANNFS---GSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKL 376
                   G      +  T+              F    I    K   L   +     +L
Sbjct: 269 KQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERL 328

Query: 377 PDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSL 434
                +      +D    ++   +        + ++L  +K  L   +    +    L
Sbjct: 329 ECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAEL 386

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  101 bits (254), Expect = 6e-23
 Identities = 60/420 (14%), Positives = 130/420 (30%), Gaps = 37/420 (8%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
                   +++  L         +   +  LDLS N   +    A +   ++L  LNL  
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPL-SQISAADLAPFTKLELLNLSS 67

Query: 62  NNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMA 121
           N     +   L++L++L+ L L  N+              +E L  + N++  R+  S  
Sbjct: 68  NVLYETLD--LESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNIS-RVSCSR- 118

Query: 122 RLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISG-HLTDQLGQFKNLD 180
                + +YL     N+ I+ + ++  GC S  ++ L L  + I   +  +       L+
Sbjct: 119 -GQGKKNIYLAN---NK-ITMLRDLDEGCRSR-VQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 181 SLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQ 240
            L+L  N I                +         KL    + +NKL   +  ++     
Sbjct: 173 HLNLQYNFIY--------------DVKGQVV--FAKLKTLDLSSNKLA-FMGPEFQSAAG 215

Query: 241 LIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQI 300
           +  + LR+  +       L   ++L+  DL  +G              ++  +     + 
Sbjct: 216 VTWISLRNNKL-VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKK 274

Query: 301 --HGELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINE 358
                    T  +   Y +    +           L   E +  S  G     L      
Sbjct: 275 LTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECEREN 334

Query: 359 TMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKN 418
             + + +   +   +  +    +  Q  + L+         +     + + L     +  
Sbjct: 335 QARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAV 394

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 96.1 bits (239), Expect = 4e-21
 Identities = 62/405 (15%), Positives = 131/405 (32%), Gaps = 26/405 (6%)

Query: 263 KDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANN 322
            +++ LDL  + +S       L   ++L LL+L  N ++ E  +L   S L  L L  N 
Sbjct: 34  WNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLY-ETLDLESLSTLRTLDLNNNY 91

Query: 323 FSGSLPLISSNLTVLELSGNSLSG-PIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWM 381
               L  +  ++  L  + N++S                  K ++L  N +         
Sbjct: 92  VQ-ELL-VGPSIETLHAANNNISRVSCSRG--------QGKKNIYLANNKITMLRDLDEG 141

Query: 382 SYQNLMALDLSNNKFTG-NLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVG 440
               +  LDL  N+    N      S  +L  L+L+ N +   +   +     L TLD+ 
Sbjct: 142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLS 199

Query: 441 ENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLS-GTIPN 499
            N+    +   F    + +  + LR+N     +   L     L+  DL  N    GT+ +
Sbjct: 200 SNK-LAFMGPEFQ-SAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRD 256

Query: 500 CIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIID 559
                  + TV   T   +        T+   T+        + + A + + L  ++  +
Sbjct: 257 FFSKNQRVQTVAKQTVKKLTGQNEEECTVP--TLGHYGAYCCEDLPAPFADRLIALKRKE 314

Query: 560 FSKNLFSG----TLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTG 615
            +     G     L     N    + ++     +   I +     ++  +++        
Sbjct: 315 HALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDE 374

Query: 616 EIPQSMSSLTFLNHLNLSNNYLTGKIPSSTQLQSFNASCFLGNNL 660
           ++     +   L+              ++ +         +    
Sbjct: 375 QVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRY 419

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 89.9 bits (223), Expect = 4e-19
 Identities = 46/372 (12%), Positives = 91/372 (24%), Gaps = 45/372 (12%)

Query: 1   MLPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLG 60
                  + L+N ++     L     S +  LDL  N+ D             L  LNL 
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177

Query: 61  YNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSM 120
           YN     +   +     LK L L  N   + +   F     +  +SL  N L   I +++
Sbjct: 178 YNFIYD-VKGQV-VFAKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLV-LIEKAL 233

Query: 121 ARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLD 180
               NL    L G   +              S       +A  ++         +     
Sbjct: 234 RFSQNLEHFDLRGNGFHCGTLRDF------FSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287

Query: 181 SLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQ 240
                                    L       L  L                       
Sbjct: 288 LGHYGAYCC--------------EDLPAPFADRLIALKRKEHALLSGQG----------- 322

Query: 241 LIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQI 300
                        R      +Q   + +D        T  +++         L+     +
Sbjct: 323 ---------SETERLECERENQARQREIDALKEQYR-TVIDQVTLRKQAKITLEQKKKAL 372

Query: 301 HGELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETM 360
             +++N  +A      +L        L   +   + L+L    +      ++     +  
Sbjct: 373 DEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNN 432

Query: 361 KLKFLFLDRNIL 372
            ++   + ++  
Sbjct: 433 AIRDWDMYQHKE 444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 68.3 bits (167), Expect = 3e-12
 Identities = 49/295 (16%), Positives = 89/295 (30%), Gaps = 45/295 (15%)

Query: 376 LPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLV 435
           + +   +        ++++     L +   S  ++  L L  N LS      L   T L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 436 TLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSG 495
            L++  N              S +  L L +N        EL     ++ L  A+NN+S 
Sbjct: 62  LLNLSSNV-LYETLDLES--LSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISR 113

Query: 496 TIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLV 555
              +       +        N I       + +                        + V
Sbjct: 114 VSCSRGQGKKNIY----LANNKI-------TMLRDLDEGC----------------RSRV 146

Query: 556 RIIDFSKNLFSG-TLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFT 614
           + +D   N            +   ++ LNL YN     +   +     L+++D S NK  
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA 204

Query: 615 GEIPQSMSSLTFLNHLNLSNNYLT---GKIPSSTQLQSFNASCFLGNNLCGAPLP 666
             +     S   +  ++L NN L      +  S  L+ F+     GN      L 
Sbjct: 205 -FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLR---GNGFHCGTLR 255

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  103 bits (259), Expect = 1e-23
 Identities = 89/494 (18%), Positives = 160/494 (32%), Gaps = 109/494 (22%)

Query: 1   MLPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLG 60
           +     EL+L+N  L   P+LP      L +L  S N    + +P     L  L   N  
Sbjct: 69  LDRQAHELELNNLGLSSLPELP----PHLESLVASCNSL--TELPELPQSLKSLLVDNNN 122

Query: 61  YNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSM 120
                   P        L++LG+  N     +P+     + L+ + +  NSL+ ++P   
Sbjct: 123 LKALSDLPP-------LLEYLGVSNNQL-EKLPE-LQNSSFLKIIDVDNNSLK-KLPDL- 171

Query: 121 ARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLD 180
               +L  +  G  +L +E+ E+  +        L ++   ++S+   L D      +L+
Sbjct: 172 --PPSLEFIAAGNNQL-EELPELQNLPF------LTAIYADNNSLK-KLPDLPL---SLE 218

Query: 181 SLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQ 240
           S+   NN +                L E+   NL  L+      N L             
Sbjct: 219 SIVAGNNILE--------------ELPEL--QNLPFLTTIYADNNLLK------------ 250

Query: 241 LIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQI 300
                          P    S + L   D + + +       L +S + L + +   + +
Sbjct: 251 -------------TLPDLPPSLEALNVRDNYLTDLP-----ELPQSLTFLDVSENIFSGL 292

Query: 301 HGELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETM 360
                NL       YL+  +N    SL  +  +L  L +S N L   +            
Sbjct: 293 SELPPNLY------YLNASSNEIR-SLCDLPPSLEELNVSNNKLIE-LPALPP------- 337

Query: 361 KLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRL 420
           +L+ L    N L  ++P+     QNL  L +  N      P    S+  L        R+
Sbjct: 338 RLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLR-EFPDIPESVEDL--------RM 384

Query: 421 SGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDL 480
           +  +  + +   +L  L V  N      P         +  L + S     P        
Sbjct: 385 NSHLAEVPELPQNLKQLHVETNP-LREFPDIPES----VEDLRMNSERVVDPYEFAHETT 439

Query: 481 AFLQILDLADNNLS 494
             L+      ++  
Sbjct: 440 DKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 97.8 bits (244), Expect = 1e-21
 Identities = 94/498 (18%), Positives = 155/498 (31%), Gaps = 108/498 (21%)

Query: 27  STLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFN 86
           + L       +    + +P     +         ++ ++   P G      +    L   
Sbjct: 11  TFLQEPLRHSSNL--TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC 68

Query: 87  HFS------------SSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGA 134
                          SS+P   +   HLE L  S NSL   +P     L +L        
Sbjct: 69  LDRQAHELELNNLGLSSLP---ELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLK 124

Query: 135 KLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLDLSNN------- 187
            L+     +  +  G  +N LE L             +L     L  +D+ NN       
Sbjct: 125 ALSDLPPLLEYL--GVSNNQLEKL------------PELQNSSFLKIIDVDNNSLKKLPD 170

Query: 188 SIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLR 247
                  +    N+L   L E    NL  L+      N L                    
Sbjct: 171 LPPSLEFIAAGNNQLE-ELPE--LQNLPFLTAIYADNNSLK------------------- 208

Query: 248 SCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNL 307
                 + P    S   L+ +   N+ +    P   L++   L  +   +N +   L +L
Sbjct: 209 ------KLPDLPLS---LESIVAGNNILE-ELPE--LQNLPFLTTIYADNNLLK-TLPDL 255

Query: 308 TKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFL 367
                L  L++  N  +  LP +  +LT L++S N  SG +             L +L  
Sbjct: 256 --PPSLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSG-LSELPP-------NLYYLNA 304

Query: 368 DRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPIL 427
             N ++  L D      +L  L++SNNK    LP     L     L    N L+  +P L
Sbjct: 305 SSNEIR-SLCDLP---PSLEELNVSNNKLI-ELPALPPRLE---RLIASFNHLA-EVPEL 355

Query: 428 LKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILD 487
            +N      L V  N      P           +  LR N+    +P    +   L+ L 
Sbjct: 356 PQNLKQ---LHVEYNP-LREFPDIPES------VEDLRMNSHLAEVPELPQN---LKQLH 402

Query: 488 LADNNLSGTIPNCIHNLT 505
           +  N L    P+   ++ 
Sbjct: 403 VETNPLR-EFPDIPESVE 419

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 93.9 bits (234), Expect = 2e-20
 Identities = 96/565 (16%), Positives = 180/565 (31%), Gaps = 120/565 (21%)

Query: 74  NLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGG 133
           + T L+      ++ +  +P   + +        +++  E   P        +    L  
Sbjct: 9   SNTFLQEPLRHSSNLTE-MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRL-- 65

Query: 134 AKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLDLSNNSIVGPR 193
                           C+      L L +  +S  L +      +L+SL  S NS+    
Sbjct: 66  --------------RDCLDRQAHELELNNLGLS-SLPELPP---HLESLVASCNSLT--- 104

Query: 194 VLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGS 253
                       L E+   +L  L V       L+         P  L  LG+ +  +  
Sbjct: 105 -----------ELPEL-PQSLKSLLVDNNNLKALS-------DLPPLLEYLGVSNNQLEK 145

Query: 254 RFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQL 313
              L   +   L+ +D+ N+ +    P+        L  +  G+NQ+  EL  L     L
Sbjct: 146 LPELQ--NSSFLKIIDVDNNSLK-KLPDLP----PSLEFIAAGNNQLE-ELPELQNLPFL 197

Query: 314 SYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQ 373
           + +    N+    LP +  +L  +    N L           +     L  ++ D N+L+
Sbjct: 198 TAIYADNNSLK-KLPDLPLSLESIVAGNNILEELP------ELQNLPFLTTIYADNNLLK 250

Query: 374 GKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTS 433
             LPD      +L AL++ +N  T +LP    SL+ L       + LS   P       +
Sbjct: 251 -TLPDLP---PSLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPP-------N 298

Query: 434 LVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNL 493
           L  L+   NE   ++     +    +  L + +N     LP     L   + L  + N+L
Sbjct: 299 LYYLNASSNE-IRSLC----DLPPSLEELNVSNNKLIE-LPALPPRL---ERLIASFNHL 349

Query: 494 SGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILN 553
           +  +P    NL  +        N +   FP                         +   +
Sbjct: 350 A-EVPELPQNLKQLH----VEYNPLR-EFP-------------------------DIPES 378

Query: 554 LVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKF 613
           +    D   N     +P    NLK    L++  N      P+      S+E +  +  + 
Sbjct: 379 VE---DLRMNSHLAEVPELPQNLK---QLHVETNPLR-EFPDIPE---SVEDLRMNSERV 428

Query: 614 TGEIPQSMSSLTFLNHLNLSNNYLT 638
                 +  +   L      +++  
Sbjct: 429 VDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 81.2 bits (201), Expect = 3e-16
 Identities = 90/477 (18%), Positives = 159/477 (33%), Gaps = 93/477 (19%)

Query: 182 LDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQL 241
           ++  N S    +    + + L     E    N+   + +    ++             ++
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLTEMPVEA--ENVKSKTEYYNAWSEWERNAPPGNGEQREM 60

Query: 242 IELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIH 301
               LR C             +    L+L N G+S + P         L  L    N   
Sbjct: 61  AVSRLRDC-----------LDRQAHELELNNLGLS-SLPELP----PHLESLVASCNS-- 102

Query: 302 GELTNLTKA-SQLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSG-PIFHFLCYTINET 359
             LT L +    L  L +  NN   +L  +   L  L +S N L   P            
Sbjct: 103 --LTELPELPQSLKSLLVDNNNLK-ALSDLPPLLEYLGVSNNQLEKLPELQNS------- 152

Query: 360 MKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNR 419
             LK + +D N L+ KLPD      +L  +   NN+    LP  L +L  L +++   N 
Sbjct: 153 SFLKIIDVDNNSLK-KLPD---LPPSLEFIAAGNNQLE-ELP-ELQNLPFLTAIYADNNS 206

Query: 420 LSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCD 479
           L   +P L  +   L ++  G N     +P    +    +  +   +N     LP     
Sbjct: 207 LK-KLPDLPLS---LESIVAGNNI-LEELPEL--QNLPFLTTIYADNNLLKT-LPDLPPS 258

Query: 480 LAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELV 539
           L   + L++ DN L+  +P    +LT                                L 
Sbjct: 259 L---EALNVRDNYLT-DLPELPQSLT-------------------------------FLD 283

Query: 540 VTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGT 599
           V++ + +  +E+   +  ++ S N    +L     +L   + LN+S N     +P     
Sbjct: 284 VSENIFSGLSELPPNLYYLNASSNEIR-SLCDLPPSL---EELNVSNNKLI-ELPALPP- 337

Query: 600 MRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSSTQLQSFNASCFL 656
              LE +  S N    E+P+   +L     L++  N L         ++    +  L
Sbjct: 338 --RLERLIASFNHLA-EVPELPQNLK---QLHVEYNPLREFPDIPESVEDLRMNSHL 388

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.8 bits (122), Expect = 1e-06
 Identities = 33/152 (21%), Positives = 51/152 (33%), Gaps = 28/152 (18%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
            PSL EL++SN +L   P LP      L  L  S N    + VP        L  L++ Y
Sbjct: 316 PPSLEELNVSNNKLIELPALP----PRLERLIASFNHL--AEVPE---LPQNLKQLHVEY 366

Query: 62  NNFQG--PIPEGLQNLT-------------SLKHLGLPFNHFSSSVPKWFDRLTHLEHLS 106
           N  +    IPE +++L              +LK L +  N      P        +E L 
Sbjct: 367 NPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE-FPDI---PESVEDLR 422

Query: 107 LSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQ 138
           ++   +      +      L          + 
Sbjct: 423 MNSERVVDPYEFAHETTDKLEDDVFEHHHHHH 454

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  102 bits (255), Expect = 8e-23
 Identities = 85/454 (18%), Positives = 156/454 (34%), Gaps = 34/454 (7%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDN-SFVPAWVFGLSRLHFLNLG 60
           L  L  L LS+ ++             L  LD+SHN+  N S  P     ++ L  L+L 
Sbjct: 75  LSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCP-----MASLRHLDLS 129

Query: 61  YNNFQG-PIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRL-THLEHLSLSYNSLEGRIPR 118
           +N+F   P+ +   NLT L  LGL    F          L      L L    ++G    
Sbjct: 130 FNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETE 189

Query: 119 SMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKN 178
           S+    N   L+L     +    ++    +      L ++ L   +    +T      + 
Sbjct: 190 SLQIP-NTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRG 248

Query: 179 --LDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWI 236
             L ++ L +        ++L+       +  ++  NLT            +    +   
Sbjct: 249 PTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALK--- 305

Query: 237 PPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLG 296
               L+   +++               ++    L  S            S S    L+  
Sbjct: 306 ---SLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP-FIHMVCPPSPSSFTFLNFT 361

Query: 297 HNQIHG-ELTNLTKASQLSYLSLIANNFSGSLPLISS------NLTVLELSGNSLSGPIF 349
            N          +   +L  L L  N    +   ++       +L  L++S NSL+   +
Sbjct: 362 QNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAY 420

Query: 350 HFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSS 409
              C        +  L L  N+L G +  C      +  LDL NN+   ++P  +  L +
Sbjct: 421 DRTC---AWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQA 474

Query: 410 LVSLHLRKNRLSGTIPI-LLKNCTSLVTLDVGEN 442
           L  L++  N+L  ++P  +    TSL  + + +N
Sbjct: 475 LQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 94.6 bits (235), Expect = 2e-20
 Identities = 90/509 (17%), Positives = 161/509 (31%), Gaps = 74/509 (14%)

Query: 4   SLVELDLSNCQLHHFPQ-LPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLGY 61
               +D SN  L H P+ LP         L LS N    S +       LS L  L L +
Sbjct: 32  LESMVDYSNRNLTHVPKDLP----PRTKALSLSQNSI--SELRMPDISFLSELRVLRLSH 85

Query: 62  NNFQGPIPEGL-QNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSM 120
           N  +  +   +      L++L +  N   + +      +  L HL LS+N  +  +P   
Sbjct: 86  NRIRS-LDFHVFLFNQDLEYLDVSHNRLQN-IS--CCPMASLRHLDLSFNDFD-VLPVCK 140

Query: 121 A--RLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKN 178
               L  L  L L                          L L                 +
Sbjct: 141 EFGNLTKLTFLGLSA-------------------AKFRQLDLLPV-----------AHLH 170

Query: 179 LDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPP 238
           L  + L   S          L   + T+  + F   +  SV +  +      ++      
Sbjct: 171 LSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQ------ 224

Query: 239 FQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHN 298
              I+L   +C     F   L     L  + L +   +     +L +     +   + + 
Sbjct: 225 LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF---FWPRPVEYL 281

Query: 299 QIHGELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINE 358
            I            L+    I             +L +  +                 + 
Sbjct: 282 NI----------YNLTITERIDREEFTYSETALKSLMIEHVKNQV----FLFSKEALYSV 327

Query: 359 TMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKN 418
             ++    L  +        C  S  +   L+ + N FT ++     +L  L +L L++N
Sbjct: 328 FAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN 387

Query: 419 RLS--GTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTE 476
            L     + ++ KN +SL TLDV  N +  +           +++L L SN   G +   
Sbjct: 388 GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRC 447

Query: 477 LCDLAFLQILDLADNNLSGTIPNCIHNLT 505
           L     +++LDL +N +  +IP  + +L 
Sbjct: 448 LPPK--VKVLDLHNNRIM-SIPKDVTHLQ 473

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 65.3 bits (159), Expect = 3e-11
 Identities = 70/326 (21%), Positives = 116/326 (35%), Gaps = 30/326 (9%)

Query: 332 SNLTVLELSGN---SLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMA 388
           S L VL LS N   SL   +F F          L++L +  N LQ  +  C M+  +L  
Sbjct: 76  SELRVLRLSHNRIRSLDFHVFLFN-------QDLEYLDVSHNRLQ-NISCCPMA--SLRH 125

Query: 389 LDLSNNKFTGNLPTS--LGSLSSLVSLHLRKNRL-SGTIPILLKNCTSLVTLDVGENEVF 445
           LDLS N F   LP     G+L+ L  L L   +     +  +     S + LD+    + 
Sbjct: 126 LDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIK 184

Query: 446 GNIP-SWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLS-GTIPNCIHN 503
           G    S      + + L+   ++ F   +   +  L  LQ+ ++  N+ +   +   +  
Sbjct: 185 GGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSE 244

Query: 504 LTAMATVNPFTGNAIEYS----FPLNSTIGPGTVTEQEL-------VVTKGVAADYNEIL 552
           LT   T+   T   IE +      L     P  V    +        + +         L
Sbjct: 245 LTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETAL 304

Query: 553 NLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNK 612
             + I      +F  +     +    +    LS +           +  S   ++F+ N 
Sbjct: 305 KSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNV 364

Query: 613 FTGEIPQSMSSLTFLNHLNLSNNYLT 638
           FT  + Q  S+L  L  L L  N L 
Sbjct: 365 FTDSVFQGCSTLKRLQTLILQRNGLK 390

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 63.4 bits (154), Expect = 1e-10
 Identities = 82/485 (16%), Positives = 151/485 (31%), Gaps = 75/485 (15%)

Query: 178 NLDSLDLSNNSI-----------VGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANK 226
              +L LS NSI              RVL+L  N++  +L    F     L    V  N+
Sbjct: 53  RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNR 111

Query: 227 LTLKVKRDWIPPFQLIELG---LRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRL 283
           L   +    +   + ++L         V   F     +   L FL L  +         +
Sbjct: 112 LQ-NISCCPMASLRHLDLSFNDFDVLPVCKEFG----NLTKLTFLGLSAAKFRQLDLLPV 166

Query: 284 LKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANN---FSGSLPLISSNLTVLELS 340
                   LLDL    I G  T   +    + L L+ +    FS  + +  + L  L+LS
Sbjct: 167 AHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLS 226

Query: 341 GNSLSG-PIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQN-----LMALDLSNN 394
              L+       + +    T     L +    ++         +Q      +  L++ N 
Sbjct: 227 NIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNL 286

Query: 395 KFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGE 454
             T  +     + S      L    +                     N+VF         
Sbjct: 287 TITERIDREEFTYSETALKSLMIEHVK--------------------NQVFLFSKEALYS 326

Query: 455 RFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFT 514
            F+ M + +L  ++            +    L+   N  + ++      L  + T+    
Sbjct: 327 VFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLI-LQ 385

Query: 515 GNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLT 574
            N ++ +F   + +   T     L                   +D S N  +        
Sbjct: 386 RNGLK-NFFKVALM---TKNMSSL-----------------ETLDVSLNSLNSHAYDRTC 424

Query: 575 NLKA-VQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLS 633
                +  LNLS N+ TG +   +     ++ +D   N+    IP+ ++ L  L  LN++
Sbjct: 425 AWAESILVLNLSSNMLTGSVFRCLPP--KVKVLDLHNNRIM-SIPKDVTHLQALQELNVA 481

Query: 634 NNYLT 638
           +N L 
Sbjct: 482 SNQLK 486

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 98.5 bits (246), Expect = 8e-23
 Identities = 47/232 (20%), Positives = 79/232 (34%), Gaps = 29/232 (12%)

Query: 3   PSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLGY 61
            S   L+L + +L   P       + LT L LS N        +    G + L +L+L +
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 62  NNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPK-WFDRLTHLEHLSLSYNSLEGRIPRSM 120
           N     +      L  L+HL    ++         F  L +L +L +S+           
Sbjct: 88  NGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 146

Query: 121 ARLCNLRRLYLGGAKLNQEISEILE-IFSGCVSNGLESLALAS---SSISGHLTDQLGQF 176
             L +L  L + G   N      L  IF+   +  L  L L+      +S    + L   
Sbjct: 147 NGLSSLEVLKMAG---NSFQENFLPDIFTELRN--LTFLDLSQCQLEQLSPTAFNSL--- 198

Query: 177 KNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLT 228
            +L  L++S+N+                +L    +  L  L V     N + 
Sbjct: 199 SSLQVLNMSHNNFF--------------SLDTFPYKCLNSLQVLDYSLNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 90.5 bits (225), Expect = 5e-20
 Identities = 47/192 (24%), Positives = 83/192 (43%), Gaps = 11/192 (5%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANF--STLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNL 59
           L  L +L LS+  L        ++F  ++L  LDLS N      + +   GL +L  L+ 
Sbjct: 51  LTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV--ITMSSNFLGLEQLEHLDF 108

Query: 60  GYNNFQGPIPEGL-QNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPR 118
            ++N +      +  +L +L +L +   H   +    F+ L+ LE L ++ NS +     
Sbjct: 109 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 168

Query: 119 SM-ARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFK 177
            +   L NL  L L   +L +++S     F+   S  L+ L ++ ++     T       
Sbjct: 169 DIFTELRNLTFLDLSQCQL-EQLSP--TAFNSLSS--LQVLNMSHNNFFSLDTFPYKCLN 223

Query: 178 NLDSLDLSNNSI 189
           +L  LD S N I
Sbjct: 224 SLQVLDYSLNHI 235

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 89.7 bits (223), Expect = 8e-20
 Identities = 74/296 (25%), Positives = 106/296 (35%), Gaps = 53/296 (17%)

Query: 12  NCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLGYNN--FQGPI 68
            C       +P    S+ T L+L  N+  +  +P  VF  L++L  L+L  N   F+G  
Sbjct: 13  RCNSKGLTSVPTGIPSSATRLELESNKLQS--LPHGVFDKLTQLTKLSLSSNGLSFKGCC 70

Query: 69  PEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSM-ARLCNLR 127
            +     TSLK+L L FN    ++   F  L  LEHL   +++L+     S+   L NL 
Sbjct: 71  SQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 129

Query: 128 RLYLGGAKLNQEISEI-LEIFSGCVSNGLESLALAS-SSISGHLTDQLGQFKNLDSLDLS 185
            L +               IF+G  S  LE L +A  S     L D   + +NL  LDLS
Sbjct: 130 YLDISH---TH-TRVAFNGIFNGLSS--LEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183

Query: 186 NNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELG 245
              +                LS   F +L+ L V  +  N          +  F    L 
Sbjct: 184 QCQLE--------------QLSPTAFNSLSSLQVLNMSHNNFF------SLDTFPYKCL- 222

Query: 246 LRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIH 301
                              LQ LD   + I  +    L    S L  L+L  N   
Sbjct: 223 -----------------NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 83.1 bits (206), Expect = 1e-17
 Identities = 33/133 (24%), Positives = 55/133 (41%), Gaps = 1/133 (0%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
           L +L+ LD+S+              S+L  L ++ N F  +F+P     L  L FL+L  
Sbjct: 125 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184

Query: 62  NNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMA 121
              +   P    +L+SL+ L +  N+F S     +  L  L+ L  S N +     + + 
Sbjct: 185 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 244

Query: 122 RLC-NLRRLYLGG 133
               +L  L L  
Sbjct: 245 HFPSSLAFLNLTQ 257

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 74.7 bits (184), Expect = 1e-14
 Identities = 62/264 (23%), Positives = 95/264 (35%), Gaps = 31/264 (11%)

Query: 68  IPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMA--RLCN 125
           +P G+   +S   L L  N   S     FD+LT L  LSLS N L  +   S +     +
Sbjct: 22  VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTS 79

Query: 126 LRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLDLS 185
           L+ L L     N  +  +   F G     LE L    S++      +   F +L +L   
Sbjct: 80  LKYLDLSF---NG-VITMSSNFLGLEQ--LEHLDFQHSNLKQ--MSEFSVFLSLRNL--- 128

Query: 186 NNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRD-WIPPFQLIEL 244
                    L +             F  L+ L V  +  N        D +     L  L
Sbjct: 129 -------IYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 180

Query: 245 GLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQI---- 300
            L  C +    P    S   LQ L++ ++    +      K  + L +LD   N I    
Sbjct: 181 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIMTSK 239

Query: 301 HGELTNLTKASQLSYLSLIANNFS 324
             EL +    S L++L+L  N+F+
Sbjct: 240 KQELQHFP--SSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 67.3 bits (165), Expect = 2e-12
 Identities = 45/220 (20%), Positives = 75/220 (34%), Gaps = 24/220 (10%)

Query: 293 LDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFL 352
           L+L  N++                SL    F   L      LT L LS N LS       
Sbjct: 33  LELESNKLQ---------------SLPHGVFDK-LT----QLTKLSLSSNGLS--FKGCC 70

Query: 353 CYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSL-GSLSSLV 411
             +   T  LK+L L  N +   +   ++  + L  LD  ++        S+  SL +L+
Sbjct: 71  SQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 129

Query: 412 SLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDG 471
            L +           +    +SL  L +  N    N           +  L L     + 
Sbjct: 130 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 189

Query: 472 PLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVN 511
             PT    L+ LQ+L+++ NN           L ++  ++
Sbjct: 190 LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD 229

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 61/313 (19%), Positives = 100/313 (31%), Gaps = 87/313 (27%)

Query: 330 ISSNLTVLELSGNSLSG-PIFHFLCYTINETMKLKFLFLDRNILQGK--LPDCWMSYQNL 386
           I S+ T LEL  N L   P   F   T     +L  L L  N L  K           +L
Sbjct: 26  IPSSATRLELESNKLQSLPHGVFDKLT-----QLTKLSLSSNGLSFKGCCSQSDFGTTSL 80

Query: 387 MALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPI-LLKNCTSLVTLDVGENEVF 445
             LDLS N     + ++   L  L  L  + + L       +  +  +L+ LD+      
Sbjct: 81  KYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-- 137

Query: 446 GNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTI-PNCIHNL 504
                            +  +  F+G        L+ L++L +A N+      P+    L
Sbjct: 138 ---------------TRVAFNGIFNG--------LSSLEVLKMAGNSFQENFLPDIFTEL 174

Query: 505 TAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNL 564
             +                              L +         ++  L      S   
Sbjct: 175 RNL----------------------------TFLDL------SQCQLEQL------SPTA 194

Query: 565 FSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSM--S 622
           F+      L++L   Q LN+S+N F          + SL+ +D+S+N       +     
Sbjct: 195 FNS-----LSSL---QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQH 245

Query: 623 SLTFLNHLNLSNN 635
             + L  LNL+ N
Sbjct: 246 FPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 60.0 bits (146), Expect = 6e-10
 Identities = 54/290 (18%), Positives = 82/290 (28%), Gaps = 81/290 (27%)

Query: 176 FKNLDSLDLSNNSI--VGP---------RVLQLYLNKL-HGTLSEIHFANLTKLSVFLVG 223
             +   L+L +N +  +             L L  N L             T L    + 
Sbjct: 27  PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86

Query: 224 ANKLTLKVKRDWIPP-FQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNR 282
            N +        +   F    LGL                  L+ LD  +S +       
Sbjct: 87  FNGVIT------MSSNF----LGLEQ----------------LEHLDFQHSNLKQMSEFS 120

Query: 283 LLKSASQLYLLDLGHNQIH----GELTNLTKASQLSYLSLIANNFSGSLPLIS----SNL 334
           +  S   L  LD+ H        G    L+    L  L +  N+F  +          NL
Sbjct: 121 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSS---LEVLKMAGNSFQENFLPDIFTELRNL 177

Query: 335 TVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNN 394
           T L+LS   L                      L        L        +L  L++S+N
Sbjct: 178 TFLDLSQCQLE--------------------QLSPTAFNS-LS-------SLQVLNMSHN 209

Query: 395 KFTGNLPTSLGSLSSLVSLHLRKNRLSGTIP--ILLKNCTSLVTLDVGEN 442
            F          L+SL  L    N +  T     L    +SL  L++ +N
Sbjct: 210 NFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 48/258 (18%), Positives = 80/258 (31%), Gaps = 54/258 (20%)

Query: 385 NLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLS--GTIPILLKNCTSLVTLDVGEN 442
           +   L+L +NK           L+ L  L L  N LS  G         TSL  LD+  N
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 443 EVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTEL-CDLAFLQILDLADNNLSGTIPNCI 501
            V   + S F     ++  L  + +N        +   L  L  LD++  +         
Sbjct: 89  GV-ITMSSNF-LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 146

Query: 502 HNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFS 561
           + L+++                                          E+L +      +
Sbjct: 147 NGLSSL------------------------------------------EVLKM------A 158

Query: 562 KNLFSGTLPMG-LTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQS 620
            N F         T L+ +  L+LS        P    ++ SL+ ++ S N F       
Sbjct: 159 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 218

Query: 621 MSSLTFLNHLNLSNNYLT 638
              L  L  L+ S N++ 
Sbjct: 219 YKCLNSLQVLDYSLNHIM 236

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 96.2 bits (240), Expect = 7e-22
 Identities = 51/363 (14%), Positives = 97/363 (26%), Gaps = 67/363 (18%)

Query: 284 LKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNS 343
                 LY    G   +      L++  +         + +      S+N  +   +G +
Sbjct: 11  SSGRENLYFQ--GSTALRPYHDVLSQWQRHYNADRNRWHSAWRQAN-SNNPQIETRTGRA 67

Query: 344 LSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTS 403
           L          T         L L    L  + PD      +L  + +        LP +
Sbjct: 68  LKATADLLEDAT---QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDT 122

Query: 404 LGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVL-- 461
           +   + L +L L +N L   +P  + +   L  L +        +P       +      
Sbjct: 123 MQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG 181

Query: 462 ------LILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTG 515
                 L L        LP  + +L  L+ L + ++ LS  +   IH+L  +        
Sbjct: 182 LVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKL-------- 231

Query: 516 NAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTN 575
                                             E L+L               P     
Sbjct: 232 ----------------------------------EELDL------RGCTALRNYPPIFGG 251

Query: 576 LKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNN 635
              ++ L L        +P  I  +  LE +D         +P  ++ L     + +  +
Sbjct: 252 RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311

Query: 636 YLT 638
              
Sbjct: 312 LQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 89.6 bits (223), Expect = 1e-19
 Identities = 60/366 (16%), Positives = 116/366 (31%), Gaps = 59/366 (16%)

Query: 152 SNGLESLALASSSISGHLTDQLGQFKNLDSLDLSNNSIVG-------PRVLQLYLNKLHG 204
           S+G E+L    S+      D L Q++   + D +             P++       L  
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKA 70

Query: 205 TLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKD 264
           T   +  A         + +  L                          +FP   +    
Sbjct: 71  TADLLEDATQPGRVALELRSVPLP-------------------------QFPDQAFRLSH 105

Query: 265 LQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIH---GELTNLTKASQLSYLSLIAN 321
           LQ + +  +G+    P+ + +  + L  L L  N +      + +L +   L  LS+ A 
Sbjct: 106 LQHMTIDAAGLM-ELPDTM-QQFAGLETLTLARNPLRALPASIASLNR---LRELSIRAC 160

Query: 322 NFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWM 381
                LP   ++          ++                L+ L L+   ++  LP    
Sbjct: 161 PELTELPEPLASTDASGEHQGLVN----------------LQSLRLEWTGIR-SLPASIA 203

Query: 382 SYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGE 441
           + QNL +L + N+  +  L  ++  L  L  L LR        P +      L  L + +
Sbjct: 204 NLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKD 262

Query: 442 NEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCI 501
                 +P     R +++  L LR       LP+ +  L    I+ +  +  +    +  
Sbjct: 263 CSNLLTLPLDIH-RLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRP 321

Query: 502 HNLTAM 507
               A 
Sbjct: 322 VARPAE 327

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 83.8 bits (208), Expect = 1e-17
 Identities = 48/351 (13%), Positives = 92/351 (26%), Gaps = 83/351 (23%)

Query: 310 ASQLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDR 369
           +S    L    +        + S       +  +     +         +   +      
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAW-----RQANSNNPQIETRTG 65

Query: 370 NILQGKLPDCW--MSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPIL 427
             L+    D     +    +AL+L +       P     LS L  + +    L   +P  
Sbjct: 66  RALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDT 122

Query: 428 LKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILD 487
           ++    L TL +  N                     LR+      LP  +  L  L+ L 
Sbjct: 123 MQQFAGLETLTLARNP--------------------LRA------LPASIASLNRLRELS 156

Query: 488 LADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAAD 547
           +        +P  + +  A                                         
Sbjct: 157 IRACPELTELPEPLASTDASGEHQGLV--------------------------------- 183

Query: 548 YNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESID 607
                NL + +         +LP  + NL+ ++SL +  +  +  +   I  +  LE +D
Sbjct: 184 -----NL-QSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELD 235

Query: 608 FSVNKFTGEIPQSMSSLTFLNHLNLSN-NYLTGKIPSS----TQLQSFNAS 653
                     P        L  L L + + L   +P      TQL+  +  
Sbjct: 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLR 285

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 77.3 bits (191), Expect = 2e-15
 Identities = 32/143 (22%), Positives = 50/143 (34%), Gaps = 3/143 (2%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
           L +L  L L    +   P   +AN   L +L + ++    S +   +  L +L  L+L  
Sbjct: 182 LVNLQSLRLEWTGIRSLPA-SIANLQNLKSLKIRNSPL--SALGPAIHHLPKLEELDLRG 238

Query: 62  NNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMA 121
                  P        LK L L       ++P    RLT LE L L       R+P  +A
Sbjct: 239 CTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298

Query: 122 RLCNLRRLYLGGAKLNQEISEIL 144
           +L     + +      Q      
Sbjct: 299 QLPANCIILVPPHLQAQLDQHRP 321

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 75.4 bits (186), Expect = 7e-15
 Identities = 53/302 (17%), Positives = 89/302 (29%), Gaps = 32/302 (10%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
           L        ++    H      AN +       +      +              L L  
Sbjct: 32  LSQWQRHYNADRNRWHSAWRQ-ANSNNPQIETRTGRALKATADLLEDATQPGRVALELRS 90

Query: 62  NNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMA 121
                  P+    L+ L+H+ +        +P    +   LE L+L+ N L   +P S+A
Sbjct: 91  VPLPQ-FPDQAFRLSHLQHMTIDAAGLME-LPDTMQQFAGLETLTLARNPLR-ALPASIA 147

Query: 122 RLCNLRRLYLGG----AKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFK 177
            L  LR L +       +L + ++             L+SL L  + I   L   +   +
Sbjct: 148 SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQ 206

Query: 178 NLDSLDLSNNSIVG-P---------RVLQLYLNKLHGTLSEIHFANLTKLSVF-LVGANK 226
           NL SL + N+ +               L L             F     L    L   + 
Sbjct: 207 NLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPP-IFGGRAPLKRLILKDCSN 265

Query: 227 LTLKVKRDWIPP-----FQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPN 281
           L        +P       QL +L LR C   SR P  +        + +     +    +
Sbjct: 266 LL------TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQH 319

Query: 282 RL 283
           R 
Sbjct: 320 RP 321

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 70.0 bits (172), Expect = 4e-13
 Identities = 52/366 (14%), Positives = 106/366 (28%), Gaps = 58/366 (15%)

Query: 51  LSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYN 110
            S    L    +    P  + L       +      H +           + +  + +  
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQAN----SNNPQIETRTGR 66

Query: 111 SLEGRIPRSMARL--CNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGH 168
           +L+      +          L L    L     +  +         L+ + + ++ +   
Sbjct: 67  ALK-ATADLLEDATQPGRVALELRSVPL----PQFPDQAFRLSH--LQHMTIDAAGLM-E 118

Query: 169 LTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVF-LVGANKL 227
           L D + QF  L++L L+ N           L  L  ++     A+L +L    +    +L
Sbjct: 119 LPDTMQQFAGLETLTLARNP----------LRALPASI-----ASLNRLRELSIRACPEL 163

Query: 228 TLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSA 287
           T       +P      L                   +LQ L L  +GI  + P  +  + 
Sbjct: 164 TE------LPE----PLASTD------ASGEHQGLVNLQSLRLEWTGIR-SLPASI-ANL 205

Query: 288 SQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPL-IS--SNLTVLELSGNSL 344
             L  L + ++ +      +    +L  L L       + P      + L  L L   S 
Sbjct: 206 QNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSN 265

Query: 345 SGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTG---NLP 401
                  L   I+   +L+ L L   +   +LP           + +  +       + P
Sbjct: 266 ----LLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRP 321

Query: 402 TSLGSL 407
            +  + 
Sbjct: 322 VARPAE 327

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 97.1 bits (242), Expect = 2e-21
 Identities = 51/237 (21%), Positives = 78/237 (32%), Gaps = 25/237 (10%)

Query: 3   PSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLGY 61
            +   L+L    +         +   L  L L  N      +    F GL+ L+ L L  
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI--RQIEVGAFNGLASLNTLELFD 132

Query: 62  NNFQGPIPEG-LQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLS-YNSLEGRIPRS 119
           N     IP G  + L+ L+ L L  N   S     F+R+  L  L L     LE     +
Sbjct: 133 NWLTV-IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGA 191

Query: 120 MARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNL 179
              L NL+ L LG   +       +   +  V   LE L ++ +              +L
Sbjct: 192 FEGLFNLKYLNLGMCNIKD-----MPNLTPLVG--LEELEMSGNHFPEIRPGSFHGLSSL 244

Query: 180 DSLDLSNNSI--VGP---------RVLQLYLNKLHGTLSEIHFANLTKLSVFLVGAN 225
             L + N+ +  +             L L  N L  +L    F  L  L    +  N
Sbjct: 245 KKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 89.8 bits (223), Expect = 3e-19
 Identities = 68/293 (23%), Positives = 100/293 (34%), Gaps = 52/293 (17%)

Query: 12  NCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLGYNNFQGPIPE 70
            C      ++P    S    L+L  N      + A  F  L  L  L LG N+ +  I  
Sbjct: 60  VCTRRGLSEVPQGIPSNTRYLNLMENNIQM--IQADTFRHLHHLEVLQLGRNSIRQ-IEV 116

Query: 71  G-LQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSM-ARLCNLRR 128
           G    L SL  L L  N  +      F+ L+ L  L L  N +E  IP     R+ +L R
Sbjct: 117 GAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMR 175

Query: 129 LYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLDLSNNS 188
           L LG  K  + ISE    F G  +  L+ L L   +I       +     L  L      
Sbjct: 176 LDLGELKKLEYISE--GAFEGLFN--LKYLNLGMCNIK-----DMPNLTPLVGL------ 220

Query: 189 IVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRS 248
                 L++  N     +    F  L+ L    V  ++++       I       L    
Sbjct: 221 ----EELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVS------LIERNAFDGL---- 265

Query: 249 CDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIH 301
                           L  L+L ++ +S + P+ L      L  L L HN  +
Sbjct: 266 --------------ASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 82.1 bits (203), Expect = 1e-16
 Identities = 35/133 (26%), Positives = 52/133 (39%), Gaps = 4/133 (3%)

Query: 2   LPSLVELDLSNC-QLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLG 60
           +PSL+ LDL    +L +  +        L  L+L         +P     L  L  L + 
Sbjct: 170 VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI--KDMPNLT-PLVGLEELEMS 226

Query: 61  YNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSM 120
            N+F    P     L+SLK L +  +  S      FD L  L  L+L++N+L        
Sbjct: 227 GNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLF 286

Query: 121 ARLCNLRRLYLGG 133
             L  L  L+L  
Sbjct: 287 TPLRYLVELHLHH 299

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 80.9 bits (200), Expect = 3e-16
 Identities = 68/322 (21%), Positives = 102/322 (31%), Gaps = 75/322 (23%)

Query: 26  FSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPF 85
            +  + +  +      S VP  +   S   +LNL  NN Q    +  ++L  L+ L L  
Sbjct: 53  SNQFSKVVCTRRGL--SEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGR 108

Query: 86  NHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSM-ARLCNLRRLYLGGAKLNQEISEIL 144
           N         F+ L  L  L L  N L   IP      L  LR L+L     N  I  I 
Sbjct: 109 NSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRN---NP-IESIP 163

Query: 145 E-IFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLH 203
              F+   S  L  L L       ++++  G F+ L +L          + L L +    
Sbjct: 164 SYAFNRVPS--LMRLDLGELKKLEYISE--GAFEGLFNL----------KYLNLGMCN-- 207

Query: 204 GTLSEI-HFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQ 262
             + ++ +   L  L    +  N          I P      GL S              
Sbjct: 208 --IKDMPNLTPLVGLEELEMSGNHFP------EIRPGSF--HGLSS-------------- 243

Query: 263 KDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANN 322
             L+ L + NS +S           + L  L+L HN +                SL  + 
Sbjct: 244 --LKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLS---------------SLPHDL 285

Query: 323 FSGSLPLISSNLTVLELSGNSL 344
           F+         L  L L  N  
Sbjct: 286 FTP-----LRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 80.9 bits (200), Expect = 3e-16
 Identities = 38/137 (27%), Positives = 55/137 (40%), Gaps = 6/137 (4%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSH-NQFDNSFVPAWVF-GLSRLHFLNL 59
           L  L EL L N  +   P        +L  LDL    +    ++    F GL  L +LNL
Sbjct: 146 LSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKL--EYISEGAFEGLFNLKYLNL 203

Query: 60  GYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRS 119
           G  N +  +P  L  L  L+ L +  NHF    P  F  L+ L+ L +  + +      +
Sbjct: 204 GMCNIKD-MPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNA 261

Query: 120 MARLCNLRRLYLGGAKL 136
              L +L  L L    L
Sbjct: 262 FDGLASLVELNLAHNNL 278

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 67.5 bits (165), Expect = 6e-12
 Identities = 51/215 (23%), Positives = 81/215 (37%), Gaps = 17/215 (7%)

Query: 311 SQLSYLSLIANNFSGSLPL-ISSNLTVLELSGN---SLSGPIFHFLCYTINETMKLKFLF 366
           +Q S +       S  +P  I SN   L L  N    +    F  L         L+ L 
Sbjct: 54  NQFSKVVCTRRGLS-EVPQGIPSNTRYLNLMENNIQMIQADTFRHLH-------HLEVLQ 105

Query: 367 LDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPI 426
           L RN ++      +    +L  L+L +N  T     +   LS L  L LR N +  +IP 
Sbjct: 106 LGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPS 164

Query: 427 -LLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQI 485
                  SL+ LD+GE +    I     E    +  L L   N    +P  L  L  L+ 
Sbjct: 165 YAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MPN-LTPLVGLEE 222

Query: 486 LDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEY 520
           L+++ N+     P   H L+++  +     + +  
Sbjct: 223 LEMSGNHFPEIRPGSFHGLSSLKKLW-VMNSQVSL 256

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 64.0 bits (156), Expect = 6e-11
 Identities = 43/254 (16%), Positives = 83/254 (32%), Gaps = 50/254 (19%)

Query: 385 NLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEV 444
           N   L+L  N        +   L  L  L L +N +            SL TL++ +N  
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW- 134

Query: 445 FGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNL 504
                           L ++ S  F+         L+ L+ L L +N +        + +
Sbjct: 135 ----------------LTVIPSGAFEY--------LSKLRELWLRNNPIESIPSYAFNRV 170

Query: 505 TAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNL 564
            ++  ++      +         I  G                    L  ++ ++     
Sbjct: 171 PSLMRLDLGELKKL-------EYISEGAFEG----------------LFNLKYLNLGMCN 207

Query: 565 FSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSL 624
               +P  LT L  ++ L +S N F    P +   + SL+ +    ++ +     +   L
Sbjct: 208 IK-DMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGL 265

Query: 625 TFLNHLNLSNNYLT 638
             L  LNL++N L+
Sbjct: 266 ASLVELNLAHNNLS 279

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 92.7 bits (231), Expect = 5e-21
 Identities = 49/191 (25%), Positives = 74/191 (38%), Gaps = 13/191 (6%)

Query: 3   PSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLGY 61
            +   + L   ++ H P         LT L L  N    + + A  F GL+ L  L+L  
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL--ARIDAAAFTGLALLEQLDLSD 89

Query: 62  NNFQGPIPEG-LQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIP-RS 119
           N     +       L  L  L L         P  F  L  L++L L  N+L+  +P  +
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDT 148

Query: 120 MARLCNLRRLYLGGAKLNQEISEILE-IFSGCVSNGLESLALASSSISGHLTDQLGQFKN 178
              L NL  L+L G   N+ IS + E  F G  S  L+ L L  + ++            
Sbjct: 149 FRDLGNLTHLFLHG---NR-ISSVPERAFRGLHS--LDRLLLHQNRVAHVHPHAFRDLGR 202

Query: 179 LDSLDLSNNSI 189
           L +L L  N++
Sbjct: 203 LMTLYLFANNL 213

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 92.7 bits (231), Expect = 6e-21
 Identities = 50/188 (26%), Positives = 76/188 (40%), Gaps = 9/188 (4%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLG 60
             +L  L L +  L           + L  LDLS N      V    F GL RLH L+L 
Sbjct: 55  CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA-QLRSVDPATFHGLGRLHTLHLD 113

Query: 61  YNNFQGPIPEG-LQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRS 119
               Q  +  G  + L +L++L L  N   +     F  L +L HL L  N +     R+
Sbjct: 114 RCGLQE-LGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA 172

Query: 120 MARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNL 179
              L +L RL L   ++   +      F       L +L L ++++S   T+ L   + L
Sbjct: 173 FRGLHSLDRLLLHQNRV-AHVHP--HAFRDLGR--LMTLYLFANNLSALPTEALAPLRAL 227

Query: 180 DSLDLSNN 187
             L L++N
Sbjct: 228 QYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 73.5 bits (181), Expect = 1e-14
 Identities = 57/278 (20%), Positives = 89/278 (32%), Gaps = 53/278 (19%)

Query: 27  STLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFN 86
               T            VP  +   +    + L  N          +   +L  L L  N
Sbjct: 11  EPKVTTSCPQQGL--QAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSN 66

Query: 87  HFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSM-ARLCNLRRLYLGGAKLNQEISEILE 145
             +      F  L  LE L LS N+    +  +    L  L  L+L    L QE+     
Sbjct: 67  VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL-QELGP--G 123

Query: 146 IFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGT 205
           +F G  +  L+ L L  +++   L D    F++L +L            L L+ N++  +
Sbjct: 124 LFRGLAA--LQYLYLQDNALQ-ALPD--DTFRDLGNL----------THLFLHGNRIS-S 167

Query: 206 LSEIHFANLTKLSVFLVGANKLTLKVKRDWIPP--FQLIELGLRSCDVGSRFPLWLYSQK 263
           + E  F  L  L   L+  N++        + P  F+     L                 
Sbjct: 168 VPERAFRGLHSLDRLLLHQNRVA------HVHPHAFR----DLGR--------------- 202

Query: 264 DLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIH 301
            L  L LF + +S   P   L     L  L L  N   
Sbjct: 203 -LMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 52/258 (20%), Positives = 76/258 (29%), Gaps = 68/258 (26%)

Query: 176 FKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDW 235
                 + L  N I                +    F     L++  + +N L        
Sbjct: 31  PAASQRIFLHGNRI--------------SHVPAASFRACRNLTILWLHSNVLA------R 70

Query: 236 IPP--FQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLL 293
           I    F     GL                  L+ LDL ++    +          +L+ L
Sbjct: 71  IDAAAFT----GLAL----------------LEQLDLSDNAQLRSVDPATFHGLGRLHTL 110

Query: 294 DLGHNQIH----GELTNLTKASQLSYLSLIANNFSGSLPLIS----SNLTVLELSGNSLS 345
            L    +     G    L     L YL L  N    +LP  +     NLT L L GN +S
Sbjct: 111 HLDRCGLQELGPGLFRGLA---ALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRIS 166

Query: 346 GPIFHFLCYTINETM-----KLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNL 400
                    ++ E        L  L L +N +    P  +     LM L L  N  +   
Sbjct: 167 ---------SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 217

Query: 401 PTSLGSLSSLVSLHLRKN 418
             +L  L +L  L L  N
Sbjct: 218 TEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 37/182 (20%), Positives = 61/182 (33%), Gaps = 14/182 (7%)

Query: 330 ISSNLTVLELSGN---SLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNL 386
           I +    + L GN    +    F            L  L+L  N+L       +     L
Sbjct: 30  IPAASQRIFLHGNRISHVPAASFRAC-------RNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 387 MALDLSNNKFTGNLP-TSLGSLSSLVSLHLRKNRLSGTIPI-LLKNCTSLVTLDVGENEV 444
             LDLS+N    ++   +   L  L +LHL +  L   +   L +   +L  L + +N +
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNAL 141

Query: 445 FGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNL 504
              +P         +  L L  N            L  L  L L  N ++   P+   +L
Sbjct: 142 -QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200

Query: 505 TA 506
             
Sbjct: 201 GR 202

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 45/252 (17%), Positives = 76/252 (30%), Gaps = 50/252 (19%)

Query: 385 NLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEV 444
               + L  N+ +     S  +  +L  L L  N L+            L  LD+ +N  
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 445 FGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCI-HN 503
             ++         R+  L L         P     LA LQ L L DN L   +P+    +
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRD 151

Query: 504 LTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKN 563
           L  +                              L +        N I ++       + 
Sbjct: 152 LGNL----------------------------THLFL------HGNRISSV------PER 171

Query: 564 LFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSS 623
            F      GL +L     L L  N      P     +  L ++    N  +    ++++ 
Sbjct: 172 AFR-----GLHSL---DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAP 223

Query: 624 LTFLNHLNLSNN 635
           L  L +L L++N
Sbjct: 224 LRALQYLRLNDN 235

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 94.8 bits (236), Expect = 7e-21
 Identities = 53/237 (22%), Positives = 78/237 (32%), Gaps = 25/237 (10%)

Query: 3   PSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLGY 61
            +   L+L   Q+         +   L  L LS N      +    F GL+ L+ L L  
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI--RTIEIGAFNGLANLNTLELFD 121

Query: 62  NNFQGPIPEG-LQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLS-YNSLEGRIPRS 119
           N     IP G    L+ LK L L  N   S     F+R+  L  L L     L      +
Sbjct: 122 NRLTT-IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGA 180

Query: 120 MARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNL 179
              L NLR L L    L +     +   +  +   L+ L L+ + +S           +L
Sbjct: 181 FEGLSNLRYLNLAMCNLRE-----IPNLTPLIK--LDELDLSGNHLSAIRPGSFQGLMHL 233

Query: 180 DSLDLSNNSI--VGP---------RVLQLYLNKLHGTLSEIHFANLTKLSVFLVGAN 225
             L +  + I  +             + L  N L   L    F  L  L    +  N
Sbjct: 234 QKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 93.3 bits (232), Expect = 2e-20
 Identities = 47/191 (24%), Positives = 82/191 (42%), Gaps = 11/191 (5%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLG 60
           L +L  L+L + +L   P       S L  L L +N      +P++ F  +  L  L+LG
Sbjct: 111 LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPI--ESIPSYAFNRIPSLRRLDLG 168

Query: 61  YNNFQGPIPEG-LQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRS 119
                  I EG  + L++L++L L   +    +P     L  L+ L LS N L    P S
Sbjct: 169 ELKRLSYISEGAFEGLSNLRYLNLAMCNL-REIPN-LTPLIKLDELDLSGNHLSAIRPGS 226

Query: 120 MARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNL 179
              L +L++L++  +++ Q I      F       L  + LA ++++    D      +L
Sbjct: 227 FQGLMHLQKLWMIQSQI-QVIER--NAFDNL--QSLVEINLAHNNLTLLPHDLFTPLHHL 281

Query: 180 DSLDLSNNSIV 190
           + + L +N   
Sbjct: 282 ERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 89.8 bits (223), Expect = 4e-19
 Identities = 62/292 (21%), Positives = 98/292 (33%), Gaps = 50/292 (17%)

Query: 12  NCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLGYNNFQGPIPE 70
            C   +  ++P    +    L+L  NQ     +    F  L  L  L L  N+ +     
Sbjct: 49  ICVRKNLREVPDGISTNTRLLNLHENQIQI--IKVNSFKHLRHLEILQLSRNHIRTIEIG 106

Query: 71  GLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSM-ARLCNLRRL 129
               L +L  L L  N  ++     F  L+ L+ L L  N +E  IP     R+ +LRRL
Sbjct: 107 AFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRL 165

Query: 130 YLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLDLSNNSI 189
            LG  K    ISE    F G  +  L  L LA  ++      ++     L  L       
Sbjct: 166 DLGELKRLSYISE--GAFEGLSN--LRYLNLAMCNLR-----EIPNLTPLIKL------- 209

Query: 190 VGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSC 249
                L L  N L   +    F  L  L    +  +++        I       L     
Sbjct: 210 ---DELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQ------VIERNAFDNL----- 254

Query: 250 DVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIH 301
                        + L  ++L ++ ++   P+ L      L  + L HN  +
Sbjct: 255 -------------QSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 63.2 bits (154), Expect = 1e-10
 Identities = 54/275 (19%), Positives = 92/275 (33%), Gaps = 52/275 (18%)

Query: 362 LKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLS 421
            + L L  N +Q    + +   ++L  L LS N        +   L++L +L L  NRL+
Sbjct: 66  TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT 125

Query: 422 GTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTE-LCDL 480
                     + L  L +  N    +IPS+   R   +  L L        +       L
Sbjct: 126 TIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGL 184

Query: 481 AFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVV 540
           + L+ L+LA  NL   IPN +  L  +  ++  +GN +       S I PG+        
Sbjct: 185 SNLRYLNLAMCNLR-EIPN-LTPLIKLDELD-LSGNHL-------SAIRPGS-------- 226

Query: 541 TKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTM 600
                                              L  +Q L +  +            +
Sbjct: 227 --------------------------------FQGLMHLQKLWMIQSQIQVIERNAFDNL 254

Query: 601 RSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNN 635
           +SL  I+ + N  T       + L  L  ++L +N
Sbjct: 255 QSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 62.8 bits (153), Expect = 2e-10
 Identities = 47/254 (18%), Positives = 84/254 (33%), Gaps = 50/254 (19%)

Query: 385 NLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEV 444
           N   L+L  N+       S   L  L  L L +N +            +L TL++ +N +
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124

Query: 445 FGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNL 504
              IP+      S++  L LR+N  +         +  L+ LDL +      I       
Sbjct: 125 -TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE----- 178

Query: 505 TAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNL 564
                   F G                                    L+ +R ++ +   
Sbjct: 179 ------GAFEG------------------------------------LSNLRYLNLAMCN 196

Query: 565 FSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSL 624
               +P  LT L  +  L+LS N  +   P +   +  L+ +    ++       +  +L
Sbjct: 197 LR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNL 254

Query: 625 TFLNHLNLSNNYLT 638
             L  +NL++N LT
Sbjct: 255 QSLVEINLAHNNLT 268

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 91.6 bits (228), Expect = 3e-20
 Identities = 64/307 (20%), Positives = 102/307 (33%), Gaps = 43/307 (14%)

Query: 4   SLVELDLSNCQLHHFPQ-LPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLGY 61
            L  +  S+  L   P+ LP         LDL +N+     +    F  L  LH L L  
Sbjct: 32  HLRVVQCSDLGLEKVPKDLP----PDTALLDLQNNKITE--IKDGDFKNLKNLHTLILIN 85

Query: 62  NNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSM- 120
           N      P     L  L+ L L  N       K       L+ L +  N +  ++ +S+ 
Sbjct: 86  NKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP---KTLQELRVHENEIT-KVRKSVF 141

Query: 121 ARLCNLRRLYLGGAKLNQEISEILE--IFSGCVSNGLESLALASSSISGHLTDQLGQFKN 178
             L  +  + LG    N   S  +E   F G     L  + +A ++I+  +   L    +
Sbjct: 142 NGLNQMIVVELGT---NPLKSSGIENGAFQGMKK--LSYIRIADTNIT-TIPQGL--PPS 193

Query: 179 LDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPP 238
           L  L L  N I                +       L  L+   +  N ++          
Sbjct: 194 LTELHLDGNKI--------------TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT 239

Query: 239 FQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGIS----GTF-PNRLLKSASQLYLL 293
             L EL L +  +  + P  L   K +Q + L N+ IS      F P       +    +
Sbjct: 240 PHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGV 298

Query: 294 DLGHNQI 300
            L  N +
Sbjct: 299 SLFSNPV 305

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 89.3 bits (222), Expect = 1e-19
 Identities = 46/233 (19%), Positives = 87/233 (37%), Gaps = 28/233 (12%)

Query: 1   MLPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNL 59
           M  +L EL +   ++    +      + +  ++L  N   +S +    F G+ +L ++ +
Sbjct: 119 MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 178

Query: 60  GYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRS 119
              N    IP+GL    SL  L L  N  +         L +L  L LS+NS+      S
Sbjct: 179 ADTNITT-IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS 235

Query: 120 MARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALAS---SSISGHLTDQLGQF 176
           +A   +LR L+L     N+ + ++    +      ++ + L +   S+I  +     G  
Sbjct: 236 LANTPHLRELHLNN---NK-LVKVPGGLADHKY--IQVVYLHNNNISAIGSNDFCPPGYN 289

Query: 177 KNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIH---FANLTKLSVFLVGANK 226
               S             + L+ N +     EI    F  +   +   +G  K
Sbjct: 290 TKKASY----------SGVSLFSNPV--QYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 71.2 bits (175), Expect = 2e-13
 Identities = 67/380 (17%), Positives = 116/380 (30%), Gaps = 93/380 (24%)

Query: 124 CNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLD 183
           C+LR +      L        ++    +      L L ++ I+          KNL +L 
Sbjct: 31  CHLRVVQCSDLGLE-------KVPKD-LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLI 82

Query: 184 LSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIE 243
           L NN I                +S   FA L KL    +  N+L        +P      
Sbjct: 83  LINNKIS--------------KISPGAFAPLVKLERLYLSKNQLKE------LPEKMP-- 120

Query: 244 LGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGE 303
                              K LQ L +  + I+      +    +Q+ +++LG N +   
Sbjct: 121 -------------------KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPL--- 157

Query: 304 LTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETM--K 361
                         +    F G        L+ + ++  +++         TI + +   
Sbjct: 158 ----------KSSGIENGAFQGM-----KKLSYIRIADTNIT---------TIPQGLPPS 193

Query: 362 LKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLS 421
           L  L LD N +            NL  L LS N  +     SL +   L  LHL  N+L 
Sbjct: 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253

Query: 422 GTIPILLKNCTSLVTLDVGEN-----EVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTE 476
             +P  L +   +  + +  N           P  +  + +    + L SN        E
Sbjct: 254 -KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ---YWE 309

Query: 477 LCDLAF-----LQILDLADN 491
           +    F        + L + 
Sbjct: 310 IQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 66.9 bits (164), Expect = 4e-12
 Identities = 48/273 (17%), Positives = 94/273 (34%), Gaps = 38/273 (13%)

Query: 385 NLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEV 444
           +   LDL NNK T        +L +L +L L  N++S   P        L  L + +N+ 
Sbjct: 53  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ- 111

Query: 445 FGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTI--PNCIH 502
              +P    +    +  L +  N       +    L  + +++L  N L  +        
Sbjct: 112 LKELPE---KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168

Query: 503 NLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTE-QELVVTKGVAADYNEI---------- 551
            +  ++ +       I       +TI  G      EL +      D N+I          
Sbjct: 169 GMKKLSYIR-IADTNI-------TTIPQGLPPSLTELHL------DGNKITKVDAASLKG 214

Query: 552 LNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVN 611
           LN +  +  S N  S      L N   ++ L+L+ N    ++P  +   + ++ +    N
Sbjct: 215 LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNN 273

Query: 612 KFTG------EIPQSMSSLTFLNHLNLSNNYLT 638
             +         P   +     + ++L +N + 
Sbjct: 274 NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 93.4 bits (232), Expect = 5e-20
 Identities = 76/401 (18%), Positives = 126/401 (31%), Gaps = 79/401 (19%)

Query: 98  RLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLES 157
                  L++  + L   +P  +    ++  L +    L   +  +           L +
Sbjct: 38  LNNGNAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNLT-SLPALPP--------ELRT 85

Query: 158 LALASSSISGHLTDQLGQFKNLDSLDLSNNSIVGP----RVLQLYLNKLHGTLSEIHFAN 213
           L ++ + ++  L         L         +         L ++ N+L  +L       
Sbjct: 86  LEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLT-SLPV-LPPG 142

Query: 214 LTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNS 273
           L +LSV     N+L                            P        L  L  +N+
Sbjct: 143 LQELSV---SDNQLA-------------------------SLPALPSE---LCKLWAYNN 171

Query: 274 GISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKA-SQLSYLSLIANNFSGSLPLISS 332
            ++      L    S L  L +  NQ    L +L    S+L  L    N  + SLP + S
Sbjct: 172 QLT-----SLPMLPSGLQELSVSDNQ----LASLPTLPSELYKLWAYNNRLT-SLPALPS 221

Query: 333 NLTVLELSGNSLSGPIFHFLCYTINETM-KLKFLFLDRNILQGKLPDCWMSYQNLMALDL 391
            L  L +SGN L+         ++     +LK L +  N L   LP        L++L +
Sbjct: 222 GLKELIVSGNRLT---------SLPVLPSELKELMVSGNRLT-SLPM---LPSGLLSLSV 268

Query: 392 SNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSW 451
             N+ T  LP SL  LSS  +++L  N LS      L+  TS                S 
Sbjct: 269 YRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASA 327

Query: 452 FGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNN 492
             E      L +  ++        E        +    DN 
Sbjct: 328 PRE---TRALHLAAADWLVPAREGEPAPADRWHMFGQEDNA 365

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 90.7 bits (225), Expect = 4e-19
 Identities = 74/363 (20%), Positives = 131/363 (36%), Gaps = 73/363 (20%)

Query: 288 SQLYLLDLGHNQIHGELTNLTKA--SQLSYLSLIANNFSGSLPLISSNLTVLELSGNSLS 345
           +   +L++G +     LT L     + ++ L +  NN + SLP +   L  LE+SGN L+
Sbjct: 40  NGNAVLNVGESG----LTTLPDCLPAHITTLVIPDNNLT-SLPALPPELRTLEVSGNQLT 94

Query: 346 GPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLG 405
                 L       ++L         L   LP        L  L +  N+ T +LP    
Sbjct: 95  -----SLPVLPPGLLELSIFSNPLTHLP-ALPS------GLCKLWIFGNQLT-SLPVLPP 141

Query: 406 SLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILR 465
            L  L    +  N+L+ ++P L      L  L    N+   ++P       S +  L + 
Sbjct: 142 GLQEL---SVSDNQLA-SLPALPSE---LCKLWAYNNQ-LTSLP----MLPSGLQELSVS 189

Query: 466 SNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLN 525
            N     LPT   +L     L   +N L+ ++P     L  +      +GN +  S P  
Sbjct: 190 DNQLAS-LPTLPSEL---YKLWAYNNRLT-SLPALPSGLKELI----VSGNRLT-SLP-- 237

Query: 526 STIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLS 585
                                       L + +  S N  + +LPM  + L    SL++ 
Sbjct: 238 -----------------------VLPSEL-KELMVSGNRLT-SLPMLPSGL---LSLSVY 269

Query: 586 YNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSST 645
            N  T R+PE++  + S  +++   N  +    Q++  +T     +           S+ 
Sbjct: 270 RNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAP 328

Query: 646 QLQ 648
           +  
Sbjct: 329 RET 331

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 85.3 bits (211), Expect = 2e-17
 Identities = 69/337 (20%), Positives = 113/337 (33%), Gaps = 72/337 (21%)

Query: 177 KNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWI 236
                L++  + +               TL +   A++T L +     N LT       +
Sbjct: 40  NGNAVLNVGESGL--------------TTLPDCLPAHITTLVIP---DNNLT------SL 76

Query: 237 P--PFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLD 294
           P  P +L  L +    + +  P+      +L                 L    S L  L 
Sbjct: 77  PALPPELRTLEVSGNQL-TSLPVLPPGLLELSIFSNPL--------THLPALPSGLCKLW 127

Query: 295 LGHNQIH---GELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHF 351
           +  NQ+         L        LS+  N  + SLP + S L  L    N L+      
Sbjct: 128 IFGNQLTSLPVLPPGLQ------ELSVSDNQLA-SLPALPSELCKLWAYNNQLT------ 174

Query: 352 LCYTINETM-KLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSL 410
              ++      L+ L +  N L   LP        L  L   NN+ T +LP     L  L
Sbjct: 175 ---SLPMLPSGLQELSVSDNQLA-SLPT---LPSELYKLWAYNNRLT-SLPALPSGLKEL 226

Query: 411 VSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFD 470
               +  NRL+ ++P+L    + L  L V  N    ++P         ++ L +  N   
Sbjct: 227 ---IVSGNRLT-SLPVLP---SELKELMVSGNR-LTSLPMLPS----GLLSLSVYRNQLT 274

Query: 471 GPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAM 507
             LP  L  L+    ++L  N LS      +  +T+ 
Sbjct: 275 R-LPESLIHLSSETTVNLEGNPLSERTLQALREITSA 310

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 75.3 bits (185), Expect = 3e-14
 Identities = 54/286 (18%), Positives = 99/286 (34%), Gaps = 62/286 (21%)

Query: 368 DRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPIL 427
            R  +  K+  C  +      L++  +  T  LP  L +   + +L +  N L+ ++P L
Sbjct: 26  GRAAVVQKMRACLNN--GNAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNLT-SLPAL 79

Query: 428 LKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILD 487
                 L TL+V  N+   ++P         + +      +    LP     L     L 
Sbjct: 80  PPE---LRTLEVSGNQ-LTSLPVLPP-GLLELSIFSNPLTH----LPALPSGL---CKLW 127

Query: 488 LADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAAD 547
           +  N L+ ++P     L  ++     + N +  S P                        
Sbjct: 128 IFGNQLT-SLPVLPPGLQELS----VSDNQLA-SLP------------------------ 157

Query: 548 YNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESID 607
                 L ++     N  + +LPM  + L   Q L++S N     +P     +  L + +
Sbjct: 158 -ALPSELCKL-WAYNNQLT-SLPMLPSGL---QELSVSDNQLA-SLPTLPSELYKLWAYN 210

Query: 608 FSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSSTQLQSFNAS 653
              N+ T  +P   S L     L +S N LT      ++L+    S
Sbjct: 211 ---NRLT-SLPALPSGLK---ELIVSGNRLTSLPVLPSELKELMVS 249

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 69.9 bits (171), Expect = 1e-12
 Identities = 44/186 (23%), Positives = 67/186 (36%), Gaps = 26/186 (13%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
              L EL +S+ QL   P LP    S L  L   +N+   + +PA     S L  L +  
Sbjct: 180 PSGLQELSVSDNQLASLPTLP----SELYKLWAYNNRL--TSLPAL---PSGLKELIVSG 230

Query: 62  NNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMA 121
           N     +P      + LK L +  N   +S+P      + L  LS+  N L  R+P S+ 
Sbjct: 231 NRLTS-LPV---LPSELKELMVSGNRL-TSLPML---PSGLLSLSVYRNQLT-RLPESLI 281

Query: 122 RLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDS 181
            L +   + L G   N      L   +      + S    S  I           +   +
Sbjct: 282 HLSSETTVNLEG---NP-----LSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRA 333

Query: 182 LDLSNN 187
           L L+  
Sbjct: 334 LHLAAA 339

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 64.1 bits (156), Expect = 7e-11
 Identities = 33/140 (23%), Positives = 53/140 (37%), Gaps = 13/140 (9%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
              L EL +S  +L   P LP    S L  L +S N+   + +P      S L  L++  
Sbjct: 220 PSGLKELIVSGNRLTSLPVLP----SELKELMVSGNRL--TSLPML---PSGLLSLSVYR 270

Query: 62  NNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLS---LSYNSLEGRIPR 118
           N     +PE L +L+S   + L  N  S    +    +T     S   + ++      PR
Sbjct: 271 NQLTR-LPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPR 329

Query: 119 SMARLCNLRRLYLGGAKLNQ 138
               L      +L  A+  +
Sbjct: 330 ETRALHLAAADWLVPAREGE 349

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 87.3 bits (217), Expect = 2e-18
 Identities = 86/464 (18%), Positives = 144/464 (31%), Gaps = 73/464 (15%)

Query: 27  STLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQ----GPIPEGLQNLTSLKHLG 82
             + +LD+   +  ++     +  L +   + L            I   L+   +L  L 
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 83  LPFNHFS-SSVPKWFDRL----THLEHLSLSYNSLEGR----IPRSMARLCNLRRLYLGG 133
           L  N      V      L      ++ LSL    L G     +  ++  L  L+ L+L  
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 134 AKLNQEISEILEIFSGCVSNGLESLALASSSIS----GHLTDQLGQFKNLDSLDLSNNSI 189
             L     ++L          LE L L   S+S      L   L    +   L +SNN I
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182

Query: 190 --VGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLR 247
              G RVL   L      L  +   +   ++          +  K        L EL L 
Sbjct: 183 NEAGVRVLCQGLKDSPCQLEALKLES-CGVTSDNCRDLCGIVASKA------SLRELALG 235

Query: 248 SCDVGSR-----FPLWLYSQKDLQFLDLFNSGISGTFPNRL---LKSASQLYLLDLGHNQ 299
           S  +G        P  L+    L+ L ++  GI+      L   L++   L  L L  N+
Sbjct: 236 SNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE 295

Query: 300 IHGELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINET 359
           +  E                A     +L      L  L +   S +          + + 
Sbjct: 296 LGDE---------------GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQN 340

Query: 360 MKLKFLFLDRNILQG----------KLPDCWMSYQNLMALDLSNNKFT----GNLPTSLG 405
             L  L +  N L+             P        L  L L++   +     +L  +L 
Sbjct: 341 RFLLELQISNNRLEDAGVRELCQGLGQPGS-----VLRVLWLADCDVSDSSCSSLAATLL 395

Query: 406 SLSSLVSLHLRKNRL--SGTIPI---LLKNCTSLVTLDVGENEV 444
           +  SL  L L  N L  +G + +   + +    L  L + +   
Sbjct: 396 ANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 73.1 bits (180), Expect = 9e-14
 Identities = 86/468 (18%), Positives = 147/468 (31%), Gaps = 90/468 (19%)

Query: 2   LPSLVELDLSNCQL-----HHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLS---- 52
           L     + L +C L              N   L  L+L  N+  +  V   + GL     
Sbjct: 27  LQQCQVVRLDDCGLTEARCKDISSALRVN-PALAELNLRSNELGDVGVHCVLQGLQTPSC 85

Query: 53  RLHFLNLGYNNFQ----GPIPEGLQNLTSLKHLGLPFNHFSSSVPKWF-----DRLTHLE 103
           ++  L+L          G +   L+ L +L+ L L  N    +  +       D    LE
Sbjct: 86  KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLE 145

Query: 104 HLSLSYNSLEGRIPRSMARL----CNLRRLYLGGAKLN----QEISEILEIFSGCVSNGL 155
            L L Y SL       +A +     + + L +    +N    + + + L+         L
Sbjct: 146 KLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLK----DSPCQL 201

Query: 156 ESLALASSSIS----GHLTDQLGQFKNLDSLDLSNNSI--VGPRVLQLYLNKLHGTLSEI 209
           E+L L S  ++      L   +    +L  L L +N +  VG   L   L      L  +
Sbjct: 202 EALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTL 261

Query: 210 HFANLTKLSVFLVGANKLT--LKVKRDWIPPFQLIELGLRSCDVGSR-----FPLWLYSQ 262
                  ++    G   L   L+ K        L EL L   ++G           L   
Sbjct: 262 WIWE-CGITA--KGCGDLCRVLRAKE------SLKELSLAGNELGDEGARLLCETLLEPG 312

Query: 263 KDLQFLDLFNSGISGTFPNRL---LKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLI 319
             L+ L + +   +    +     L     L  L + +N++                   
Sbjct: 313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA---------------G 357

Query: 320 ANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRN--------- 370
                  L    S L VL L+   +S      L  T+     L+ L L  N         
Sbjct: 358 VRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQ 417

Query: 371 ILQG-KLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSL----SSLVSL 413
           +++  + P C      L  L L +  ++  +   L +L     SL  +
Sbjct: 418 LVESVRQPGC-----LLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 460

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 53.4 bits (129), Expect = 1e-07
 Identities = 69/412 (16%), Positives = 118/412 (28%), Gaps = 96/412 (23%)

Query: 263 KDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANN 322
            D+Q LD+    +S      LL    Q  ++ L    +        +   +S  S +  N
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEA-----RCKDIS--SALRVN 55

Query: 323 FSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTI-NETMKLKFLFLDRNILQGK----LP 377
                      L  L L  N L     H +   +   + K++ L L    L G     L 
Sbjct: 56  ---------PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS 106

Query: 378 DCWMSYQNLMALDLSNNKFTGNLPTSLGSL-----SSLVSLHLRKNRLSGT----IPILL 428
               +   L  L LS+N         L          L  L L    LS      +  +L
Sbjct: 107 STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVL 166

Query: 429 KNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDL 488
           +       L V  N+          E   R++   L+ +               L+ L L
Sbjct: 167 RAKPDFKELTVSNND--------INEAGVRVLCQGLKDSP------------CQLEALKL 206

Query: 489 ADNNLSGTIPNCIHNLTAMATVNPF------TGNAIEYSFPLNSTIGPGTVTEQELVVTK 542
               ++    +   +L  +              N +                        
Sbjct: 207 ESCGVT---SDNCRDLCGIVASKASLRELALGSNKLG---------------------DV 242

Query: 543 GVAADYNEILNL---VRIIDFSKNLFS----GTLPMGLTNLKAVQSLNLSYNIFTGRIPE 595
           G+A     +L+    +R +   +   +    G L   L   ++++ L+L+ N        
Sbjct: 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 302

Query: 596 TIGTM-----RSLESIDFSVNKFTGE----IPQSMSSLTFLNHLNLSNNYLT 638
            +          LES+      FT          ++   FL  L +SNN L 
Sbjct: 303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE 354

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 52.3 bits (126), Expect = 3e-07
 Identities = 82/579 (14%), Positives = 158/579 (27%), Gaps = 181/579 (31%)

Query: 100 THLEHLSLSYNSL-EGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESL 158
             ++ L +    L + R    +  L   + + L    L +                 + +
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEA--------------RCKDI 48

Query: 159 ALASSSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLS 218
           + A           L     L  L+L +N + G   +   L  L                
Sbjct: 49  SSA-----------LRVNPALAELNLRSNEL-GDVGVHCVLQGLQ--------------- 81

Query: 219 VFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSR----FPLWLYSQKDLQFLDLFNSG 274
                             P  ++ +L L++C +           L +   LQ L L ++ 
Sbjct: 82  -----------------TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 124

Query: 275 ISGT----FPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLI 330
           +           LL    +L  L L +  +            L+  S++           
Sbjct: 125 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS-----CEPLA--SVLRAK-------- 169

Query: 331 SSNLTVLELSGNSLSGPIFHFLCYTINE-TMKLKFLFLDRNILQGK----LPDCWMSYQN 385
             +   L +S N ++      LC  + +   +L+ L L+   +       L     S  +
Sbjct: 170 -PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKAS 228

Query: 386 LMALDLSNNKFTGN-----LPTSLGSLSSLVSLHLRKNRLS----GTIPILLKNCTSLVT 436
           L  L L +NK          P  L   S L +L + +  ++    G +  +L+   SL  
Sbjct: 229 LRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKE 288

Query: 437 LDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGT 496
           L +  NE         G+  +R++   L                  L+ L +   + +  
Sbjct: 289 LSLAGNE--------LGDEGARLLCETLLEPGCQ------------LESLWVKSCSFT-- 326

Query: 497 IPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVR 556
              C  + +++   N F                                         + 
Sbjct: 327 -AACCSHFSSVLAQNRF-----------------------------------------LL 344

Query: 557 IIDFSKN--------LFSGTLPMGLTNLKAVQSLNLSYNIFT----GRIPETIGTMRSLE 604
            +  S N             L    + L   + L L+    +      +  T+    SL 
Sbjct: 345 ELQISNNRLEDAGVRELCQGLGQPGSVL---RVLWLADCDVSDSSCSSLAATLLANHSLR 401

Query: 605 SIDFSVNKFTGEIPQSMSSL-----TFLNHLNLSNNYLT 638
            +D S N         +          L  L L + Y +
Sbjct: 402 ELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 47/341 (13%), Positives = 97/341 (28%), Gaps = 76/341 (22%)

Query: 330 ISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGK----LPDCWMSYQN 385
           +S ++  L++    LS   +  L   +    + + + LD   L       +         
Sbjct: 1   MSLDIQSLDIQCEELSDARWAELLPLLQ---QCQVVRLDDCGLTEARCKDISSALRVNPA 57

Query: 386 LMALDLSNNKFTGNLPTSLGSL-----SSLVSLHLRKNRLSGT----IPILLKNCTSLVT 436
           L  L+L +N+        +          +  L L+   L+G     +   L+   +L  
Sbjct: 58  LAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQE 117

Query: 437 LDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGT 496
           L + +N          G+   +++   L                  L+ L L   +LS  
Sbjct: 118 LHLSDNL--------LGDAGLQLLCEGLLDPQC------------RLEKLQLEYCSLS-- 155

Query: 497 IPNCIHNLTAMATVNP------FTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNE 550
                  L ++    P       + N I                 + L      +    E
Sbjct: 156 -AASCEPLASVLRAKPDFKELTVSNNDI------------NEAGVRVLCQGLKDSPCQLE 202

Query: 551 ILNLVRIIDFSKNLFS----GTLPMGLTNLKAVQSLNLSYNIFTGR-----IPETIGTMR 601
            L L           +      L   + +  +++ L L  N           P  +    
Sbjct: 203 ALKL------ESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSS 256

Query: 602 SLESIDFSVNKFTGE----IPQSMSSLTFLNHLNLSNNYLT 638
            L ++       T +    + + + +   L  L+L+ N L 
Sbjct: 257 RLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 297

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 85.0 bits (211), Expect = 3e-18
 Identities = 69/445 (15%), Positives = 128/445 (28%), Gaps = 138/445 (31%)

Query: 51  LSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYN 110
            +R     +  ++ +  +    Q+  ++K L L  N  S          T LE L+LS N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 111 SLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLT 170
            L       +  L  LR L L     N  + E+L   S      +E+L  A+++IS    
Sbjct: 69  VLYE--TLDLESLSTLRTLDLNN---NY-VQELLVGPS------IETLHAANNNIS---R 113

Query: 171 DQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLK 230
               + +   ++ L+NN I                L ++     ++              
Sbjct: 114 VSCSRGQGKKNIYLANNKIT--------------MLRDLDEGCRSR-------------- 145

Query: 231 VKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQL 290
                                             +Q+LDL  + I       L  S+  L
Sbjct: 146 ----------------------------------VQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 291 YLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFH 350
             L+L +N I     ++                        + L  L+LS N L+     
Sbjct: 172 EHLNLQYNFI----YDVKGQVVF------------------AKLKTLDLSSNKLA----- 204

Query: 351 FLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSL 410
                                    +   + S   +  + L NNK    +  +L    +L
Sbjct: 205 ------------------------FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNL 239

Query: 411 VSLHLRKNRLS-GTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNF 469
               LR N    GT+         + T+     +    +     E  +   L    +   
Sbjct: 240 EHFDLRGNGFHCGTLRDFFSKNQRVQTVA---KQTVKKLTGQNEEECTVPTLGHYGAYCC 296

Query: 470 DGPLPTELCDLAFLQILDLADNNLS 494
           +     +L      +++ L  ++  
Sbjct: 297 E-----DLPAPFADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 84.3 bits (209), Expect = 6e-18
 Identities = 54/329 (16%), Positives = 108/329 (32%), Gaps = 39/329 (11%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLG 60
                   +++  L         +   +  LDLS N    S + A      ++L  LNL 
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPL--SQISAADLAPFTKLELLNLS 66

Query: 61  YNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSM 120
            N     +   L++L++L+ L L  N+              +E L  + N++  R+  S 
Sbjct: 67  SNVLYETLD--LESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNIS-RVSCSR 118

Query: 121 ARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISG-HLTDQLGQFKNL 179
                 + +YL     N+ I+ + ++  GC S  ++ L L  + I   +  +       L
Sbjct: 119 --GQGKKNIYLAN---NK-ITMLRDLDEGCRSR-VQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 180 DSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPF 239
           + L+L  N I                +         KL    + +NKL   +  ++    
Sbjct: 172 EHLNLQYNFIY--------------DVKGQVV--FAKLKTLDLSSNKLA-FMGPEFQSAA 214

Query: 240 QLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQ 299
            +  + LR+  +       L   ++L+  DL  +G              ++  +      
Sbjct: 215 GVTWISLRNNKL-VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK--QT 271

Query: 300 IHGELTNLTKASQLSYLSLIANNFSGSLP 328
           +        +   +  L          LP
Sbjct: 272 VKKLTGQNEEECTVPTLGHYGAYCCEDLP 300

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 82.0 bits (203), Expect = 4e-17
 Identities = 36/187 (19%), Positives = 58/187 (31%), Gaps = 11/187 (5%)

Query: 1   MLPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLG 60
                  + L+N ++     L     S +  LDL  N+ D             L  LNL 
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177

Query: 61  YNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSM 120
           YN     +   +     LK L L  N   + +   F     +  +SL  N L   I +++
Sbjct: 178 YNFIYD-VKGQV-VFAKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLV-LIEKAL 233

Query: 121 ARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLD 180
               NL    L G   +              S       +A  ++   LT Q  +   + 
Sbjct: 234 RFSQNLEHFDLRGNGFHCGTLRDF------FSKNQRVQTVAKQTVK-KLTGQNEEECTVP 286

Query: 181 SLDLSNN 187
           +L     
Sbjct: 287 TLGHYGA 293

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 82.0 bits (203), Expect = 4e-17
 Identities = 44/278 (15%), Positives = 90/278 (32%), Gaps = 38/278 (13%)

Query: 361 KLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRL 420
           + K   +  + L+  L     S  N+  LDLS N  +      L   + L  L+L  N L
Sbjct: 11  RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70

Query: 421 SGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDL 480
             T+ +  ++ ++L TLD+  N     +          +  L   +NN    +       
Sbjct: 71  YETLDL--ESLSTLRTLDLNNNY-VQELLV-----GPSIETLHAANNNISR-VSCSR--G 119

Query: 481 AFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVV 540
              + + LA+N ++          + +  ++    N I+ +                   
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLD-LKLNEID-TVNFAELAAS---------- 167

Query: 541 TKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTM 600
                       + +  ++   N     +  G      +++L+LS N     +     + 
Sbjct: 168 -----------SDTLEHLNLQYNFIY-DVK-GQVVFAKLKTLDLSSNKLA-FMGPEFQSA 213

Query: 601 RSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLT 638
             +  I    NK    I +++     L H +L  N   
Sbjct: 214 AGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 81.6 bits (202), Expect = 6e-17
 Identities = 50/321 (15%), Positives = 95/321 (29%), Gaps = 46/321 (14%)

Query: 25  NFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGL 83
           N +      ++ +        A +      +  L+L  N         L   T L+ L L
Sbjct: 8   NGNRYKIEKVTDSSLKQ--ALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 84  PFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEI 143
             N    ++    + L+ L  L L+ N ++      +    ++  L+      N  IS +
Sbjct: 66  SSNVLYETLD--LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAAN---NN-ISRV 114

Query: 144 -LEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKL 202
                      G +++ LA++ I+       G    +  LDL  N I      +L     
Sbjct: 115 SCSRGQ-----GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL----- 164

Query: 203 HGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPF----QLIELGLRSCDVGSRFPLW 258
                    A+   L    +  N +        +       +L  L L S  + +     
Sbjct: 165 --------AASSDTLEHLNLQYNFIY------DVKGQVVFAKLKTLDLSSNKL-AFMGPE 209

Query: 259 LYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSL 318
             S   + ++ L N+ +        L+ +  L   DL  N  H        +      ++
Sbjct: 210 FQSAAGVTWISLRNNKLV-LIEK-ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267

Query: 319 IANNFSGSLPLISSNLTVLEL 339
                           TV  L
Sbjct: 268 AKQTVKKLTGQNEEECTVPTL 288

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 75.0 bits (185), Expect = 9e-15
 Identities = 49/328 (14%), Positives = 93/328 (28%), Gaps = 81/328 (24%)

Query: 169 LTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLT 228
           + +            ++++S+                       +   +           
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLK--------------QALASLRQSAWNV----------- 36

Query: 229 LKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSAS 288
                                                + LDL  + +S       L   +
Sbjct: 37  -------------------------------------KELDLSGNPLS-QISAADLAPFT 58

Query: 289 QLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSG-P 347
           +L LL+L  N ++ E  +L   S L  L L  N     L  +  ++  L  + N++S   
Sbjct: 59  KLELLNLSSNVLY-ETLDLESLSTLRTLDLNNNYVQ-ELL-VGPSIETLHAANNNISRVS 115

Query: 348 IFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTG-NLPTSLGS 406
                          K ++L  N +             +  LDL  N+    N      S
Sbjct: 116 CSRG--------QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS 167

Query: 407 LSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRS 466
             +L  L+L+ N +   +   +     L TLD+  N+    +   F    + +  + LR+
Sbjct: 168 SDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNK-LAFMGPEFQ-SAAGVTWISLRN 223

Query: 467 NNFDGPLPTELCDLAFLQILDLADNNLS 494
           N     +   L     L+  DL  N   
Sbjct: 224 NKLVL-IEKALRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 70.0 bits (172), Expect = 4e-13
 Identities = 49/288 (17%), Positives = 88/288 (30%), Gaps = 45/288 (15%)

Query: 384 QNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENE 443
                  ++++     L +   S  ++  L L  N LS      L   T L  L++  N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 444 VFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHN 503
                        S +  L L +N        EL     ++ L  A+NN+S    +    
Sbjct: 70  -LYETLDLES--LSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISRVSCSRGQG 121

Query: 504 LTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKN 563
              +        N I       + +                        + V+ +D   N
Sbjct: 122 KKNIY----LANNKI-------TMLRDLDEGC----------------RSRVQYLDLKLN 154

Query: 564 -LFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMS 622
            + +        +   ++ LNL YN     +   +     L+++D S NK    +     
Sbjct: 155 EIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQ 211

Query: 623 SLTFLNHLNLSNNYLT---GKIPSSTQLQSFNASCFLGNNLCGAPLPK 667
           S   +  ++L NN L      +  S  L+ F+     GN      L  
Sbjct: 212 SAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLR---GNGFHCGTLRD 256

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 59.2 bits (144), Expect = 1e-09
 Identities = 42/240 (17%), Positives = 81/240 (33%), Gaps = 38/240 (15%)

Query: 400 LPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRM 459
           +     + +      +  + L   +  L ++  ++  LD+  N +     +     F+++
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLA-PFTKL 60

Query: 460 VLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIE 519
            LL L SN     L   L  L+ L+ LDL +N +       +    ++ T++    N I 
Sbjct: 61  ELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLH-AANNNI- 111

Query: 520 YSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAV 579
                 S +                           + I  + N  +    +       V
Sbjct: 112 ------SRVSC-------------------SRGQGKKNIYLANNKITMLRDLDEGCRSRV 146

Query: 580 QSLNLSYN-IFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLT 638
           Q L+L  N I T    E   +  +LE ++   N    ++         L  L+LS+N L 
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQ-VVFAKLKTLDLSSNKLA 204

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 21/102 (20%), Positives = 43/102 (42%), Gaps = 3/102 (2%)

Query: 552 LNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVN 611
            N  +I   + +     L     +   V+ L+LS N  +      +     LE ++ S N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 612 KFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSSTQLQSFNAS 653
                    + SL+ L  L+L+NNY+  ++     +++ +A+
Sbjct: 69  VLYE--TLDLESLSTLRTLDLNNNYVQ-ELLVGPSIETLHAA 107

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 1/75 (1%)

Query: 575 NLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSN 634
           N    +   ++ +     +     +  +++ +D S N  +      ++  T L  LNLS+
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 635 NYLTGKIPSSTQLQS 649
           N L  +      L +
Sbjct: 68  NVLY-ETLDLESLST 81

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 84.0 bits (208), Expect = 5e-18
 Identities = 43/134 (32%), Positives = 58/134 (43%), Gaps = 7/134 (5%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLG 60
           LP L  LDLS+ QL   P L       LT LD+S N+   + +P     GL  L  L L 
Sbjct: 76  LPVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRL--TSLPLGALRGLGELQELYLK 132

Query: 61  YNNFQGPIPEGL-QNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRS 119
            N  +  +P GL      L+ L L  N+ +       + L +L+ L L  NSL   IP+ 
Sbjct: 133 GNELKT-LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKG 190

Query: 120 MARLCNLRRLYLGG 133
                 L   +L G
Sbjct: 191 FFGSHLLPFAFLHG 204

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 73.6 bits (181), Expect = 2e-14
 Identities = 43/188 (22%), Positives = 68/188 (36%), Gaps = 16/188 (8%)

Query: 3   PSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYN 62
                L LS   L+ F    +  ++ LT L+L   +   + +      L  L  L+L +N
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL--TKLQVDG-TLPVLGTLDLSHN 87

Query: 63  NFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMAR 122
             Q  +P   Q L +L  L + FN  +S        L  L+ L L  N L+   P  +  
Sbjct: 88  QLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146

Query: 123 LCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALAS---SSISGHLTDQLGQFKNL 179
              L +L L    L  E+     + +G  +  L++L L      +I             L
Sbjct: 147 TPKLEKLSLANNNL-TELPA--GLLNGLEN--LDTLLLQENSLYTIPKGFFGSH----LL 197

Query: 180 DSLDLSNN 187
               L  N
Sbjct: 198 PFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 71.7 bits (176), Expect = 8e-14
 Identities = 51/194 (26%), Positives = 74/194 (38%), Gaps = 24/194 (12%)

Query: 2   LPSLVELDLSNCQLHHFPQ-LPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNL 59
           + S +E++     L   P  LP       T L LS N               +RL  LNL
Sbjct: 9   VASHLEVNCDKRNLTALPPDLPK----DTTILHLSENLL--YTFSLATLMPYTRLTQLNL 62

Query: 60  GYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRS 119
                   +      L  L  L L  N    S+P     L  L  L +S+N L   +P  
Sbjct: 63  DRAELTK-LQVD-GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLT-SLPLG 118

Query: 120 M-ARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALAS---SSISGHLTDQLGQ 175
               L  L+ LYL G +L + +     + +      LE L+LA+   + +   L + L  
Sbjct: 119 ALRGLGELQELYLKGNEL-KTLPP--GLLTPTPK--LEKLSLANNNLTELPAGLLNGLE- 172

Query: 176 FKNLDSLDLSNNSI 189
             NLD+L L  NS+
Sbjct: 173 --NLDTLLLQENSL 184

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 64.7 bits (158), Expect = 1e-11
 Identities = 30/111 (27%), Positives = 43/111 (38%), Gaps = 6/111 (5%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLG 60
           LP+L  LD+S  +L   P   +     L  L L  N+     +P  +     +L  L+L 
Sbjct: 99  LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL--KTLPPGLLTPTPKLEKLSLA 156

Query: 61  YNNFQGPIPEGL-QNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYN 110
            NN    +P GL   L +L  L L  N   +    +F     L    L  N
Sbjct: 157 NNNLTE-LPAGLLNGLENLDTLLLQENSLYTIPKGFFGSH-LLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 51/185 (27%), Positives = 72/185 (38%), Gaps = 17/185 (9%)

Query: 264 DLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNF 323
           D   L L  + +  TF    L   ++L  L+L   ++  +L        L  L L  N  
Sbjct: 32  DTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAEL-TKLQVDGTLPVLGTLDLSHNQL 89

Query: 324 SGSLPLI---SSNLTVLELSGN---SLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLP 377
             SLPL+      LTVL++S N   SL       L        +L+ L+L  N L+   P
Sbjct: 90  Q-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL-------GELQELYLKGNELKTLPP 141

Query: 378 DCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTL 437
                   L  L L+NN  T      L  L +L +L L++N L  TIP        L   
Sbjct: 142 GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFA 200

Query: 438 DVGEN 442
            +  N
Sbjct: 201 FLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 50.5 bits (121), Expect = 8e-07
 Identities = 51/175 (29%), Positives = 76/175 (43%), Gaps = 19/175 (10%)

Query: 330 ISSNLTVLELSGN---SLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNL 386
           +  + T+L LS N   + S               +L  L LDR  L  KL     +   L
Sbjct: 29  LPKDTTILHLSENLLYTFSLATLMPY-------TRLTQLNLDRAELT-KLQVDG-TLPVL 79

Query: 387 MALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPI-LLKNCTSLVTLDVGENEVF 445
             LDLS+N+   +LP    +L +L  L +  NRL+ ++P+  L+    L  L +  NE  
Sbjct: 80  GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNE-L 136

Query: 446 GNIPSWFGERFSRMVLLILRSNNFDGPLPTELCD-LAFLQILDLADNNLSGTIPN 499
             +P        ++  L L +NN    LP  L + L  L  L L +N+L  TIP 
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLY-TIPK 189

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 50/282 (17%), Positives = 70/282 (24%), Gaps = 108/282 (38%)

Query: 68  IPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLR 127
           +P  L        L L  N   +         T L  L+L    L  ++      L  L 
Sbjct: 25  LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLG 80

Query: 128 RLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLDLSNN 187
            L L                     N L+SL L   ++             L  LD+S N
Sbjct: 81  TLDLS-------------------HNQLQSLPLLGQTLP-----------ALTVLDVSFN 110

Query: 188 SIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLR 247
            +               +L       L +L    +  N+L                    
Sbjct: 111 RLT--------------SLPLGALRGLGELQELYLKGNELK------------------- 137

Query: 248 SCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQI----HGE 303
                                         T P  LL    +L  L L +N +     G 
Sbjct: 138 ------------------------------TLPPGLLTPTPKLEKLSLANNNLTELPAGL 167

Query: 304 LTNLTKASQLSYLSLIANNFSGSLP---LISSNLTVLELSGN 342
           L  L     L  L L  N+   ++P     S  L    L GN
Sbjct: 168 LNGLE---NLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 84.3 bits (209), Expect = 8e-18
 Identities = 40/217 (18%), Positives = 75/217 (34%), Gaps = 37/217 (17%)

Query: 1   MLPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLG 60
           +  SLVEL + + ++   P+   +    +  +++  N  +NS      F   +L++L + 
Sbjct: 121 LPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRIS 180

Query: 61  YNNFQGPIPEGL----------------------QNLTSLKHLGLPFNHFSSSVPKWFDR 98
                G IP+ L                         + L  LGL  N            
Sbjct: 181 EAKLTG-IPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF 239

Query: 99  LTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEI-LEIFSGCVSNG--- 154
           L  L  L L  N L  R+P  +  L  L+ +YL     N  I+++ +  F          
Sbjct: 240 LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHT---NN-ITKVGVNDFCPVGFGVKRA 294

Query: 155 -LESLALASSSISGHLTDQLGQF---KNLDSLDLSNN 187
               ++L ++ +  +   Q   F    +  ++   N 
Sbjct: 295 YYNGISLFNNPVP-YWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 82.0 bits (203), Expect = 5e-17
 Identities = 65/315 (20%), Positives = 112/315 (35%), Gaps = 37/315 (11%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
           +P L  L  +     +    P      L  +  S        VP  +        L+L  
Sbjct: 13  IPDLDSLPPT-----YSAMCPFGCHCHLRVVQCSDLGLKA--VPKEIS--PDTTLLDLQN 63

Query: 62  NNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMA 121
           N+      +  + L  L  L L  N  S    K F  L  L+ L +S N L   IP ++ 
Sbjct: 64  NDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL- 121

Query: 122 RLCNLRRLYLGGAKLNQEISEILE-IFSGCVSNGLESLALASSSISGHLTDQLGQFK--N 178
              +L  L +     N+ I ++ + +FSG  +  +  + +  + +  +   + G F    
Sbjct: 122 -PSSLVELRIHD---NR-IRKVPKGVFSGLRN--MNCIEMGGNPLE-NSGFEPGAFDGLK 173

Query: 179 LDSLDLSNNSIVGP--------RVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLK 230
           L+ L +S   + G           L L  NK+   +        +KL    +G N++ + 
Sbjct: 174 LNYLRISEAKLTGIPKDLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMI 232

Query: 231 VKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGIS----GTF-PNRLLK 285
                     L EL L +  + SR P  L   K LQ + L  + I+      F P     
Sbjct: 233 ENGSLSFLPTLRELHLDNNKL-SRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGV 291

Query: 286 SASQLYLLDLGHNQI 300
             +    + L +N +
Sbjct: 292 KRAYYNGISLFNNPV 306

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 73.5 bits (181), Expect = 3e-14
 Identities = 61/305 (20%), Positives = 99/305 (32%), Gaps = 67/305 (21%)

Query: 124 CNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLD 183
           C+LR +      L + + + +       S     L L ++ IS    D     ++L +L 
Sbjct: 33  CHLRVVQCSDLGL-KAVPKEI-------SPDTTLLDLQNNDISELRKDDFKGLQHLYALV 84

Query: 184 LSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIE 243
           L NN I                + E  F+ L KL    +  N L        IPP     
Sbjct: 85  LVNNKIS--------------KIHEKAFSPLRKLQKLYISKNHLVE------IPPNLP-- 122

Query: 244 LGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIH-- 301
                                L  L + ++ I    P  +      +  +++G N +   
Sbjct: 123 -------------------SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENS 162

Query: 302 ----GELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSG-PIFHFLCYTI 356
               G    L     L+YL +     +G    +   L  L L  N +    +   L Y+ 
Sbjct: 163 GFEPGAFDGLK----LNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYS- 217

Query: 357 NETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLR 416
               KL  L L  N ++            L  L L NNK +  +P  L  L  L  ++L 
Sbjct: 218 ----KLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLH 272

Query: 417 KNRLS 421
            N ++
Sbjct: 273 TNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 64.7 bits (158), Expect = 3e-11
 Identities = 51/285 (17%), Positives = 94/285 (32%), Gaps = 41/285 (14%)

Query: 362 LKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLS 421
              L L  N +     D +   Q+L AL L NNK +     +   L  L  L++ KN L 
Sbjct: 56  TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV 115

Query: 422 GTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNF-DGPLPTELCDL 480
              P L  +   LV L + +N +   +P         M  + +  N   +        D 
Sbjct: 116 EIPPNLPSS---LVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG 171

Query: 481 AFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVV 540
             L  L +++  L+G   +    L  +        N I         I    +       
Sbjct: 172 LKLNYLRISEAKLTGIPKDLPETLNELH----LDHNKI-------QAIELEDLLR----- 215

Query: 541 TKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTM 600
                       + +  +    N         L+ L  ++ L+L  N  + R+P  +  +
Sbjct: 216 -----------YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDL 263

Query: 601 RSLESIDFSVNKFTGEIPQSM-------SSLTFLNHLNLSNNYLT 638
           + L+ +    N  T ++  +            + N ++L NN + 
Sbjct: 264 KLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 78.9 bits (195), Expect = 2e-16
 Identities = 44/132 (33%), Positives = 62/132 (46%), Gaps = 5/132 (3%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLG 60
           L +L  L +++ +L   P         L  L L  NQ     +P  VF  L++L +L+LG
Sbjct: 84  LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQL--KSLPPRVFDSLTKLTYLSLG 141

Query: 61  YNNFQGPIPEGL-QNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRS 119
           YN  Q  +P+G+   LTSLK L L  N         FD+LT L+ L L  N L+     +
Sbjct: 142 YNELQS-LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGA 200

Query: 120 MARLCNLRRLYL 131
              L  L+ L L
Sbjct: 201 FDSLEKLKMLQL 212

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 78.1 bits (193), Expect = 4e-16
 Identities = 52/187 (27%), Positives = 79/187 (42%), Gaps = 12/187 (6%)

Query: 4   SLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLGYN 62
              +LDL + +L   P       + L  L L+ N+     +PA +F  L  L  L +  N
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL--QTLPAGIFKELKNLETLWVTDN 95

Query: 63  NFQGPIPEGL-QNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSM- 120
             Q  +P G+   L +L  L L  N   S  P+ FD LT L +LSL YN L+  +P+ + 
Sbjct: 96  KLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVF 153

Query: 121 ARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLD 180
            +L +L+ L L     NQ        F       L++L L ++ +           + L 
Sbjct: 154 DKLTSLKELRLYN---NQLKRVPEGAFDKLTE--LKTLKLDNNQLKRVPEGAFDSLEKLK 208

Query: 181 SLDLSNN 187
            L L  N
Sbjct: 209 MLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 73.5 bits (181), Expect = 1e-14
 Identities = 47/162 (29%), Positives = 67/162 (41%), Gaps = 12/162 (7%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLG 60
           L  L  L L++ +L   P         L TL ++ N+     +P  VF  L  L  L L 
Sbjct: 60  LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL--QALPIGVFDQLVNLAELRLD 117

Query: 61  YNNFQGPIPEGL-QNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRS 119
            N  +  +P  +  +LT L +L L +N   S     FD+LT L+ L L  N L+ R+P  
Sbjct: 118 RNQLKS-LPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK-RVPEG 175

Query: 120 M-ARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLAL 160
              +L  L+ L L     NQ        F       L+ L L
Sbjct: 176 AFDKLTELKTLKLDN---NQLKRVPEGAFDSLEK--LKMLQL 212

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 71.5 bits (176), Expect = 6e-14
 Identities = 49/184 (26%), Positives = 80/184 (43%), Gaps = 18/184 (9%)

Query: 12  NCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLGYNNFQGPIPE 70
           +C       +P    +    LDL  N+   S +P+  F  L++L  L L  N  Q  +P 
Sbjct: 22  DCSSKKLTAIPSNIPADTKKLDLQSNKL--SSLPSKAFHRLTKLRLLYLNDNKLQT-LPA 78

Query: 71  GL-QNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSM-ARLCNLRR 128
           G+ + L +L+ L +  N   +     FD+L +L  L L  N L+  +P  +   L  L  
Sbjct: 79  GIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTY 137

Query: 129 LYLGGAKLNQEISEILEIFSGCVSNGLESLALAS---SSISGHLTDQLGQFKNLDSLDLS 185
           L LG  +L Q + +   +F    S  L+ L L +     +     D+L +   L +L L 
Sbjct: 138 LSLGYNEL-QSLPK--GVFDKLTS--LKELRLYNNQLKRVPEGAFDKLTE---LKTLKLD 189

Query: 186 NNSI 189
           NN +
Sbjct: 190 NNQL 193

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 66.5 bits (163), Expect = 3e-12
 Identities = 38/111 (34%), Positives = 49/111 (44%), Gaps = 5/111 (4%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLG 60
           L +L EL L   QL   P     + + LT L L +N+  +  +P  VF  L+ L  L L 
Sbjct: 108 LVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS--LPKGVFDKLTSLKELRLY 165

Query: 61  YNNFQGPIPEGL-QNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYN 110
            N  +  +PEG    LT LK L L  N         FD L  L+ L L  N
Sbjct: 166 NNQLKR-VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 44/183 (24%), Positives = 63/183 (34%), Gaps = 41/183 (22%)

Query: 57  LNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRI 116
           L+L  N       +    LT L+ L L  N   +     F  L +LE L ++ N L+   
Sbjct: 42  LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP 101

Query: 117 PRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQF 176
                +L NL  L L                     N L+SL      +   LT      
Sbjct: 102 IGVFDQLVNLAELRLD-------------------RNQLKSL---PPRVFDSLT------ 133

Query: 177 KNLDSLDLSNNSI--VGPRV---------LQLYLNKLHGTLSEIHFANLTKLSVFLVGAN 225
             L  L L  N +  +   V         L+LY N+L   + E  F  LT+L    +  N
Sbjct: 134 -KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNN 191

Query: 226 KLT 228
           +L 
Sbjct: 192 QLK 194

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 49/190 (25%), Positives = 74/190 (38%), Gaps = 23/190 (12%)

Query: 264 DLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQI----HGELTNLTKASQLSYLSLI 319
           D + LDL ++ +S + P++     ++L LL L  N++     G    L     L  L + 
Sbjct: 38  DTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELK---NLETLWVT 93

Query: 320 ANNFSGSLPL----ISSNLTVLELSGN---SLSGPIFHFLCYTINETMKLKFLFLDRNIL 372
            N    +LP+       NL  L L  N   SL   +F  L        KL +L L  N L
Sbjct: 94  DNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSL-------TKLTYLSLGYNEL 145

Query: 373 QGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCT 432
           Q      +    +L  L L NN+       +   L+ L +L L  N+L         +  
Sbjct: 146 QSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLE 205

Query: 433 SLVTLDVGEN 442
            L  L + EN
Sbjct: 206 KLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 51/193 (26%), Positives = 83/193 (43%), Gaps = 19/193 (9%)

Query: 330 ISSNLTVLELSGN---SLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNL 386
           I ++   L+L  N   SL    FH L        KL+ L+L+ N LQ      +   +NL
Sbjct: 35  IPADTKKLDLQSNKLSSLPSKAFHRLT-------KLRLLYLNDNKLQTLPAGIFKELKNL 87

Query: 387 MALDLSNNKFTGNLPTSL-GSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVF 445
             L +++NK    LP  +   L +L  L L +N+L    P +  + T L  L +G NE  
Sbjct: 88  ETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-L 145

Query: 446 GNIPSWFGERFSRMVLLILRSNNFDGPLPTELCD-LAFLQILDLADNNLSGTIPNCIHNL 504
            ++P    ++ + +  L L +N     +P    D L  L+ L L +N L         +L
Sbjct: 146 QSLPKGVFDKLTSLKELRLYNNQLKR-VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSL 204

Query: 505 TAMATV----NPF 513
             +  +    NP+
Sbjct: 205 EKLKMLQLQENPW 217

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 78.5 bits (194), Expect = 3e-16
 Identities = 50/190 (26%), Positives = 79/190 (41%), Gaps = 10/190 (5%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLG 60
            P L  LDLS C++         + S L+TL L+ N      +    F GLS L  L   
Sbjct: 51  FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI--QSLALGAFSGLSSLQKLVAV 108

Query: 61  YNNFQGPIPEGL-QNLTSLKHLGLPFNHFSS-SVPKWFDRLTHLEHLSLSYNSLEGRIPR 118
             N    +      +L +LK L +  N   S  +P++F  LT+LEHL LS N ++     
Sbjct: 109 ETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167

Query: 119 SMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSN-GLESLALASSSISGHLTDQLGQFK 177
            +  L  +  L L    L+  ++ +  I  G      L+ LAL ++ +         +  
Sbjct: 168 DLRVLHQMPLLNL---SLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLT 224

Query: 178 NLDSLDLSNN 187
           +L  + L  N
Sbjct: 225 SLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 76.5 bits (189), Expect = 1e-15
 Identities = 59/224 (26%), Positives = 88/224 (39%), Gaps = 26/224 (11%)

Query: 12  NCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLGYNNFQGPIPE 70
            C   +F ++P     +   LDLS N      + ++ F     L  L+L     Q  I +
Sbjct: 13  QCMELNFYKIPDNLPFSTKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQT-IED 69

Query: 71  GL-QNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMA-RLCNLRR 128
           G  Q+L+ L  L L  N   S     F  L+ L+ L     +L   +       L  L+ 
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKE 128

Query: 129 LYLGGAKLNQEISEILEIFSGCVSNGLESLALAS---SSISGHLTDQLGQFKNLD-SLDL 184
           L +    + Q   ++ E FS   +  LE L L+S    SI       L Q   L+ SLDL
Sbjct: 129 LNVAHNLI-QSF-KLPEYFSNLTN--LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184

Query: 185 SNNSI--VGPRV--------LQLYLNKLHGTLSEIHFANLTKLS 218
           S N +  + P          L L  N+L  ++ +  F  LT L 
Sbjct: 185 SLNPMNFIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQ 227

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 50.7 bits (122), Expect = 5e-07
 Identities = 46/240 (19%), Positives = 72/240 (30%), Gaps = 50/240 (20%)

Query: 193 RVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPP------FQLIELGL 246
           + L L  N L   L    F +  +L V  +   ++        I          L  L L
Sbjct: 31  KNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ------TIEDGAYQSLSHLSTLIL 83

Query: 247 -----RSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIH 301
                +S  +G+   L       LQ L    + ++ +  N  +     L  L++ HN I 
Sbjct: 84  TGNPIQSLALGAFSGL-----SSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQ 137

Query: 302 GELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGN---SLSGPIFHFLCYTINE 358
                          S     +  +L     NL  L+LS N   S+       L      
Sbjct: 138 ---------------SFKLPEYFSNLT----NLEHLDLSSNKIQSIYCTDLRVL---HQM 175

Query: 359 TMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKN 418
            +    L L  N +   +         L  L L  N+           L+SL  + L  N
Sbjct: 176 PLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 36/185 (19%), Positives = 58/185 (31%), Gaps = 34/185 (18%)

Query: 330 ISSNLTVLELSGN---SLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNL 386
           +  +   L+LS N    L    F           +L+ L L R  +Q      + S  +L
Sbjct: 26  LPFSTKNLDLSFNPLRHLGSYSFFSF-------PELQVLDLSRCEIQTIEDGAYQSLSHL 78

Query: 387 MALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFG 446
             L L+ N        +   LSSL  L   +  L+      + +  +L  L+V  N    
Sbjct: 79  STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQ 137

Query: 447 NIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTA 506
           +                     F          L  L+ LDL+ N +       +  L  
Sbjct: 138 SFKL---------------PEYFSN--------LTNLEHLDLSSNKIQSIYCTDLRVLHQ 174

Query: 507 MATVN 511
           M  +N
Sbjct: 175 MPLLN 179

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 41.1 bits (97), Expect = 7e-04
 Identities = 46/254 (18%), Positives = 77/254 (30%), Gaps = 51/254 (20%)

Query: 385 NLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPI-LLKNCTSLVTLDVGENE 443
           +   LDLS N        S  S   L  L L +  +  TI     ++ + L TL +  N 
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNP 87

Query: 444 VFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNL-SGTIPNCIH 502
           +  ++        S +  L+    N        +  L  L+ L++A N + S  +P    
Sbjct: 88  I-QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 503 NLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSK 562
           NLT +                            + L +        N+I ++        
Sbjct: 147 NLTNL----------------------------EHLDL------SSNKIQSI------YC 166

Query: 563 NLFSGTLPMGLTNLKAVQ-SLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSM 621
                     L  +  +  SL+LS N     I         L+ +    N+         
Sbjct: 167 TDLRV-----LHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIF 220

Query: 622 SSLTFLNHLNLSNN 635
             LT L  + L  N
Sbjct: 221 DRLTSLQKIWLHTN 234

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 79.2 bits (195), Expect = 3e-16
 Identities = 47/249 (18%), Positives = 78/249 (31%), Gaps = 19/249 (7%)

Query: 263 KDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGE----LTNLTKASQLSYLSL 318
           + L++L       +       +  +  L  L +   +I          +   S L  L+L
Sbjct: 43  RSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTL 102

Query: 319 IANNFSGSLP-----LISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQ 373
                +G+ P         +L +L L   S +                LK L + +    
Sbjct: 103 ENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSL 162

Query: 374 GKLPDCWMSYQNLMALDLSNNKFTGNL-------PTSLGSLSSLVSLHLRKNRLSGTIPI 426
               +    +  L  LDLS+N   G         P    +L  L   +      SG    
Sbjct: 163 NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA 222

Query: 427 LLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQIL 486
           L      L  LD+  N +     +   +  S++  L L        +P  L   A L +L
Sbjct: 223 LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ-VPKGL--PAKLSVL 279

Query: 487 DLADNNLSG 495
           DL+ N L  
Sbjct: 280 DLSYNRLDR 288

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 66.8 bits (163), Expect = 4e-12
 Identities = 57/304 (18%), Positives = 95/304 (31%), Gaps = 40/304 (13%)

Query: 50  GLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRL---THLEHLS 106
           G S  + L              +    SLK L +      S +     R+   + L+ L+
Sbjct: 42  GRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELT 101

Query: 107 LSYNSLEGRIPRSMARLC--NLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSS 164
           L    + G  P  +      +L  L L         + + E+    +  GL+ L++A + 
Sbjct: 102 LENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQ-WLKPGLKVLSIAQAH 160

Query: 165 ISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGA 224
                 +Q+  F  L +LDLS+N  +G R L          +S +       L V  +  
Sbjct: 161 SLNFSCEQVRVFPALSTLDLSDNPELGERGL----------ISALCPLKFPTLQVLALRN 210

Query: 225 NKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLL 284
             +                                 ++  LQ LDL ++ +         
Sbjct: 211 AGME---------------------TPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC 249

Query: 285 KSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSG-SLPLISSNLTVLELSGNS 343
              SQL  L+L    +      L   ++LS L L  N       P     +  L L GN 
Sbjct: 250 DWPSQLNSLNLSFTGLKQVPKGL--PAKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNP 307

Query: 344 LSGP 347
               
Sbjct: 308 FLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 66.1 bits (161), Expect = 7e-12
 Identities = 35/192 (18%), Positives = 49/192 (25%), Gaps = 29/192 (15%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
            P L  L ++     +F    V  F  L+TLDLS N                        
Sbjct: 148 KPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL------------ 195

Query: 62  NNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSM- 120
                  P     L  L          S            L+ L LS+NSL         
Sbjct: 196 ------CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC 249

Query: 121 ARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLD 180
                L  L L    L Q            +   L  L L+ + +         +   + 
Sbjct: 250 DWPSQLNSLNLSFTGLKQ--------VPKGLPAKLSVLDLSYNRLDR--NPSPDELPQVG 299

Query: 181 SLDLSNNSIVGP 192
           +L L  N  +  
Sbjct: 300 NLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 63.0 bits (153), Expect = 7e-11
 Identities = 40/200 (20%), Positives = 64/200 (32%), Gaps = 19/200 (9%)

Query: 2   LPSLVELDLSNCQLHH--FPQLPVANFSTLTTLDLSHNQ---FDNSFVPAWVFGLSRLHF 56
           +  L EL L N ++     P L  A    L  L+L +      D        +    L  
Sbjct: 94  ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKV 153

Query: 57  LNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKW----FDRLTHLEHLSLSYN-- 110
           L++   +      E ++   +L  L L  N               +   L+ L+L     
Sbjct: 154 LSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM 213

Query: 111 -SLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHL 169
            +  G      A    L+ L L    L     +     S    + L SL L+ + +   +
Sbjct: 214 ETPSGVCSALAAARVQLQGLDLSHNSL----RDAAGAPSCDWPSQLNSLNLSFTGLK-QV 268

Query: 170 TDQLGQFKNLDSLDLSNNSI 189
              L     L  LDLS N +
Sbjct: 269 PKGL--PAKLSVLDLSYNRL 286

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 59.5 bits (144), Expect = 9e-10
 Identities = 41/264 (15%), Positives = 78/264 (29%), Gaps = 39/264 (14%)

Query: 389 LDLSNNKFTGNLPTS---LGSLSSLVSLHLRKNRLSGTIP--ILLKNCTSLVTLDVGENE 443
           L +   +    +      +  +S L  L L    ++GT P  +L      L  L++    
Sbjct: 73  LTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS 132

Query: 444 ---VFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIP-- 498
                  +          + +L +   +       ++     L  LDL+DN   G     
Sbjct: 133 WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192

Query: 499 --NCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVR 556
              C      +  +                      +    +    GV +        ++
Sbjct: 193 SALCPLKFPTLQVLA---------------------LRNAGMETPSGVCSALAAARVQLQ 231

Query: 557 IIDFSKNLFSGTLPMGL-TNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTG 615
            +D S N                + SLNLS+     ++P+ +     L  +D S N+   
Sbjct: 232 GLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLD- 287

Query: 616 EIPQSMSSLTFLNHLNLSNNYLTG 639
             P S   L  + +L+L  N    
Sbjct: 288 RNP-SPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 44.5 bits (105), Expect = 7e-05
 Identities = 40/246 (16%), Positives = 60/246 (24%), Gaps = 29/246 (11%)

Query: 404 LGSLSSLVSLHLRKNRLSGTIPIL-LKNCTSLVTLDVGENEVFGNIPSWFGE--RFSRMV 460
            G   SL  L  R +  +       +    SL  L V    +   I          S + 
Sbjct: 39  YGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQ 98

Query: 461 LLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEY 520
            L L +    G  P  L +     +  L   N+S    +                 +I  
Sbjct: 99  ELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQ 158

Query: 521 SFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLT----NL 576
           +   +S                            +  +D S N   G   +         
Sbjct: 159 A---HSLNFSCEQVRV---------------FPALSTLDLSDNPELGERGLISALCPLKF 200

Query: 577 KAVQSLNLSYNIFT---GRIPETIGTMRSLESIDFSVNKFTGEIPQSMSS-LTFLNHLNL 632
             +Q L L         G           L+ +D S N              + LN LNL
Sbjct: 201 PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNL 260

Query: 633 SNNYLT 638
           S   L 
Sbjct: 261 SFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 42.2 bits (99), Expect = 4e-04
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 6/67 (8%)

Query: 1   MLPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLG 60
               L  L+LS   L     +P    + L+ LDLS+N+ D +  P     L ++  L+L 
Sbjct: 251 WPSQLNSLNLSFTGLKQ---VPKGLPAKLSVLDLSYNRLDRNPSPD---ELPQVGNLSLK 304

Query: 61  YNNFQGP 67
            N F   
Sbjct: 305 GNPFLDS 311

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 78.7 bits (194), Expect = 7e-16
 Identities = 40/165 (24%), Positives = 63/165 (38%), Gaps = 14/165 (8%)

Query: 3   PSLVELDLSNCQLHHF-PQLPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLG 60
                LDLS+  L     +      + L +L LSHN    +F+ +  F  +  L +L+L 
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL--NFISSEAFVPVPNLRYLDLS 96

Query: 61  YNNFQGPIPEG-LQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIP-- 117
            N+    + E    +L +L+ L L  NH        F+ +  L+ L LS N +  R P  
Sbjct: 97  SNHLHT-LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVE 154

Query: 118 --RSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLAL 160
             +   +L  L  L L     N+     L       +     L L
Sbjct: 155 LIKDGNKLPKLMLLDLSS---NKLKKLPLTDLQKLPAWVKNGLYL 196

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 73.7 bits (181), Expect = 3e-14
 Identities = 34/136 (25%), Positives = 52/136 (38%), Gaps = 10/136 (7%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLG 60
           L +L  L LS+  L+            L  LDLS N      +  ++F  L  L  L L 
Sbjct: 63  LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL--HTLDEFLFSDLQALEVLLLY 120

Query: 61  YNNFQGPIPEG-LQNLTSLKHLGLPFNHFSSSVP----KWFDRLTHLEHLSLSYNSLEGR 115
            N+    +     +++  L+ L L  N   S  P    K  ++L  L  L LS N L+  
Sbjct: 121 NNHIVV-VDRNAFEDMAQLQKLYLSQNQI-SRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178

Query: 116 IPRSMARLCNLRRLYL 131
               + +L    +  L
Sbjct: 179 PLTDLQKLPAWVKNGL 194

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 73.0 bits (179), Expect = 5e-14
 Identities = 46/185 (24%), Positives = 72/185 (38%), Gaps = 18/185 (9%)

Query: 12  NCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLGYNNFQGPIPE 70
           +C     P +P +  S    LDLSHN   +     W    L+ LH L L +N+    I  
Sbjct: 24  SCSKQQLPNVPQSLPSYTALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLNF-ISS 81

Query: 71  G-LQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSM-ARLCNLRR 128
                + +L++L L  NH  +     F  L  LE L L  N +   + R+    +  L++
Sbjct: 82  EAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQK 140

Query: 129 LYLGGAKLNQEISEILEIFSGCVS-NGLESLALASSSISGHLTDQLGQFKNLDS-----L 182
           LYL   ++        E+         L  L L+S+ +       L   + L +     L
Sbjct: 141 LYLSQNQI-SRFPV--ELIKDGNKLPKLMLLDLSSNKLK---KLPLTDLQKLPAWVKNGL 194

Query: 183 DLSNN 187
            L NN
Sbjct: 195 YLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 68.7 bits (168), Expect = 1e-12
 Identities = 26/112 (23%), Positives = 37/112 (33%), Gaps = 8/112 (7%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLG 60
           +P+L  LDLS+  LH   +   ++   L  L L +N      V    F  +++L  L L 
Sbjct: 87  VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHI--VVVDRNAFEDMAQLQKLYLS 144

Query: 61  YNNFQGPIPEG----LQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLS 108
            N      P         L  L  L L  N           +L       L 
Sbjct: 145 QNQISR-FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 55.2 bits (133), Expect = 3e-08
 Identities = 37/182 (20%), Positives = 56/182 (30%), Gaps = 33/182 (18%)

Query: 330 ISSNLTVLELSGNSLS----GPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQN 385
           + S   +L+LS N+LS          L         L  L L  N L     + ++   N
Sbjct: 37  LPSYTALLDLSHNNLSRLRAEWTPTRL-------TNLHSLLLSHNHLNFISSEAFVPVPN 89

Query: 386 LMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVF 445
           L  LDLS+N            L +L  L L  N +        ++   L  L + +N+  
Sbjct: 90  LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-- 147

Query: 446 GNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLT 505
                          +                  L  L +LDL+ N L       +  L 
Sbjct: 148 ---------------ISRFPVELIKD-----GNKLPKLMLLDLSSNKLKKLPLTDLQKLP 187

Query: 506 AM 507
           A 
Sbjct: 188 AW 189

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 49.1 bits (117), Expect = 2e-06
 Identities = 39/168 (23%), Positives = 60/168 (35%), Gaps = 27/168 (16%)

Query: 264 DLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIH----GELTNLTKASQLSYLSLI 319
               LDL ++ +S           + L+ L L HN ++         +     L YL L 
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP---NLRYLDLS 96

Query: 320 ANNFSGSLPLIS----SNLTVLELSGN---SLSGPIFHFLCYTINETMKLKFLFLDRNIL 372
           +N+   +L          L VL L  N    +    F  +        +L+ L+L +N +
Sbjct: 97  SNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDM-------AQLQKLYLSQNQI 148

Query: 373 QGKLP----DCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLR 416
             + P            LM LDLS+NK      T L  L + V   L 
Sbjct: 149 S-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 36/164 (21%), Positives = 52/164 (31%), Gaps = 17/164 (10%)

Query: 193 RVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPP------FQLIELGL 246
            +L L  N L    +E     LT L   L+  N L        I          L  L L
Sbjct: 42  ALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF------ISSEAFVPVPNLRYLDL 95

Query: 247 RSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQI----HG 302
            S  + +         + L+ L L+N+ I         +  +QL  L L  NQI      
Sbjct: 96  SSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVE 154

Query: 303 ELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSG 346
            + +  K  +L  L L +N            L     +G  L  
Sbjct: 155 LIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 75.8 bits (187), Expect = 8e-16
 Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 5/133 (3%)

Query: 3   PSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLGY 61
            ++ E+ L    +   P    + +  L  +DLS+NQ   S +    F GL  L+ L L  
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQI--SELAPDAFQGLRSLNSLVLYG 89

Query: 62  NNFQGPIPEGL-QNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSM 120
           N     +P+ L + L SL+ L L  N  +      F  L +L  LSL  N L+     + 
Sbjct: 90  NKITE-LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF 148

Query: 121 ARLCNLRRLYLGG 133
           + L  ++ ++L  
Sbjct: 149 SPLRAIQTMHLAQ 161

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 66.6 bits (163), Expect = 1e-12
 Identities = 30/114 (26%), Positives = 46/114 (40%), Gaps = 11/114 (9%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANF---STLTTLDLSHNQFDNSFVPAWVF-GLSRLHFL 57
              L  +DLSN Q+     L    F    +L +L L  N+   + +P  +F GL  L  L
Sbjct: 55  YKKLRRIDLSNNQISE---LAPDAFQGLRSLNSLVLYGNKI--TELPKSLFEGLFSLQLL 109

Query: 58  NLGYNNFQGPIPEGL-QNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYN 110
            L  N     +     Q+L +L  L L  N   +     F  L  ++ + L+ N
Sbjct: 110 LLNANKINC-LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 56.6 bits (137), Expect = 3e-09
 Identities = 30/178 (16%), Positives = 59/178 (33%), Gaps = 34/178 (19%)

Query: 12  NCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLGYNNFQGPIPE 70
           +C+     ++P     T+T + L  N      +P   F    +L  ++L  N     +  
Sbjct: 17  DCRGKGLTEIPTNLPETITEIRLEQNTI--KVIPPGAFSPYKKLRRIDLSNNQISE-LAP 73

Query: 71  GLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSM-ARLCNLRRL 129
                                    F  L  L  L L  N +   +P+S+   L +L+ L
Sbjct: 74  DA-----------------------FQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLL 109

Query: 130 YLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLDLSNN 187
            L   K+   +    + F    +  L  L+L  + +           + + ++ L+ N
Sbjct: 110 LLNANKI-NCLRV--DAFQDLHN--LNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 3/88 (3%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLG 60
           L SL  L L   ++   P+       +L  L L+ N+   + +    F  L  L+ L+L 
Sbjct: 79  LRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKI--NCLRVDAFQDLHNLNLLSLY 136

Query: 61  YNNFQGPIPEGLQNLTSLKHLGLPFNHF 88
            N  Q         L +++ + L  N F
Sbjct: 137 DNKLQTIAKGTFSPLRAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 35/143 (24%), Positives = 58/143 (40%), Gaps = 9/143 (6%)

Query: 330 ISSNLTVLELSGNSLSG-PIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMA 388
           +   +T + L  N++   P   F  Y      KL+ + L  N +    PD +   ++L +
Sbjct: 30  LPETITEIRLEQNTIKVIPPGAFSPYK-----KLRRIDLSNNQISELAPDAFQGLRSLNS 84

Query: 389 LDLSNNKFTGNLPTSL-GSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGN 447
           L L  NK T  LP SL   L SL  L L  N+++       ++  +L  L + +N+    
Sbjct: 85  LVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQT 142

Query: 448 IPSWFGERFSRMVLLILRSNNFD 470
           I          +  + L  N F 
Sbjct: 143 IAKGTFSPLRAIQTMHLAQNPFI 165

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 34/139 (24%), Positives = 51/139 (36%), Gaps = 26/139 (18%)

Query: 293 LDLGHNQI----HGELTNLTKASQLSYLSLIANNFSGSLP------LISSNLTVLELSGN 342
           + L  N I     G  +   K   L  + L +NN    L       L   +L  L L GN
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKK---LRRIDL-SNNQISELAPDAFQGL--RSLNSLVLYGN 90

Query: 343 ---SLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGN 399
               L   +F  L         L+ L L+ N +     D +    NL  L L +NK    
Sbjct: 91  KITELPKSLFEGL-------FSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTI 143

Query: 400 LPTSLGSLSSLVSLHLRKN 418
              +   L ++ ++HL +N
Sbjct: 144 AKGTFSPLRAIQTMHLAQN 162

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 79.0 bits (195), Expect = 1e-15
 Identities = 82/534 (15%), Positives = 157/534 (29%), Gaps = 104/534 (19%)

Query: 3   PSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYN 62
            +      +  ++     +     +TLT+LD  ++   +  +   +  L+ L  L    N
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD--MTG-IEKLTGLTKLICTSN 74

Query: 63  NFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMAR 122
           N    +   L   T+L +L    N  ++        LT L +L+   N L       +++
Sbjct: 75  NITT-LD--LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLT---KLDVSQ 125

Query: 123 LCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSL 182
              L  L      L +             +  L  L    +     L   +     L +L
Sbjct: 126 NPLLTYLNCARNTLTE--------IDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTL 175

Query: 183 DLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLI 242
           D S N I                 +E+  +    L+      N +T              
Sbjct: 176 DCSFNKI-----------------TELDVSQNKLLNRLNCDTNNIT-------------- 204

Query: 243 ELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHG 302
           +L L                  L FLD  ++ ++       +   +QL   D   N +  
Sbjct: 205 KLDLNQN-------------IQLTFLDCSSNKLT-EID---VTPLTQLTYFDCSVNPL-- 245

Query: 303 ELTNLTKASQLSYLSLIANNFSGSLPLIS-SNLTVLELSGNSLSGPIFHFLCYTINETMK 361
              +++  S+L+ L  I  +    + L   + L   +  G      +       +    +
Sbjct: 246 TELDVSTLSKLTTLHCIQTDLL-EIDLTHNTQLIYFQAEGCRKIKEL------DVTHNTQ 298

Query: 362 LKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLS 421
           L  L      +  +L         L+ L L+N + T  L   +   + L SL      + 
Sbjct: 299 LYLLDCQAAGIT-ELDLSQN--PKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ 352

Query: 422 GTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLA 481
                 +    +L      E             +   M    L +N+    +  +L D  
Sbjct: 353 -DFS-SVGKIPALNNNFEAEG------------QTITMPKETLTNNSLTIAVSPDLLDQF 398

Query: 482 FLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTE 535
              +     +               ++T N     A+ Y+F   +    GTVT 
Sbjct: 399 GNPMNIEPGDGGVYDQATNTITWENLSTDN----PAVTYTFTSENGAIVGTVTT 448

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 72.0 bits (177), Expect = 2e-13
 Identities = 69/448 (15%), Positives = 130/448 (29%), Gaps = 110/448 (24%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
           L  L +L  ++  +     L ++  + LT L    N+  N  V      L++L +LN   
Sbjct: 63  LTGLTKLICTSNNIT---TLDLSQNTNLTYLACDSNKLTNLDVT----PLTKLTYLNCDT 115

Query: 62  NNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMA 121
           N     +         L +L    N  +          T L  L    N    ++   + 
Sbjct: 116 NKLT-KLDVS--QNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITKLD--VT 167

Query: 122 RLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDS 181
               L  L                       N +  L              + Q K L+ 
Sbjct: 168 PQTQLTTLDCSF-------------------NKITEL-------------DVSQNKLLNR 195

Query: 182 LDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQL 241
           L+   N+I                 +++      +L+     +NKLT             
Sbjct: 196 LNCDTNNI-----------------TKLDLNQNIQLTFLDCSSNKLT------------- 225

Query: 242 IELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIH 301
            E+ +                  L + D   + ++       L   S+L  L      + 
Sbjct: 226 -EIDVTPL-------------TQLTYFDCSVNPLT-ELDVSTL---SKLTTLHCIQTDLL 267

Query: 302 GELTNLTKASQLSYLSLIANNFSGSLPLIS-SNLTVLELSGNSLSGPIFHFLCYTINETM 360
               +LT  +QL Y           L +   + L +L+     ++               
Sbjct: 268 E--IDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQN-------P 318

Query: 361 KLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRL 420
           KL +L+L+   L  +L     +   L +L   N     +   S+G + +L +    + + 
Sbjct: 319 KLVYLYLNNTELT-ELDVSHNT--KLKSLSCVNAHIQ-DFS-SVGKIPALNNNFEAEGQT 373

Query: 421 SGTIPILLKNCTSLVTLDVGENEVFGNI 448
                  L N +  + +     + FGN 
Sbjct: 374 ITMPKETLTNNSLTIAVSPDLLDQFGNP 401

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 65.5 bits (160), Expect = 2e-11
 Identities = 70/378 (18%), Positives = 132/378 (34%), Gaps = 43/378 (11%)

Query: 284 LKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLIS-SNLTVLELSGN 342
            +  + L  LD  ++ I  ++T + K + L+ L   +NN + +L L   +NLT L    N
Sbjct: 38  EEQLATLTSLDCHNSSIT-DMTGIEKLTGLTKLICTSNNIT-TLDLSQNTNLTYLACDSN 95

Query: 343 SLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPT 402
            L+      L        KL +L  D N L  KL         L  L+ + N  T     
Sbjct: 96  KLTNLDVTPL-------TKLTYLNCDTNKLT-KLDVSQNP--LLTYLNCARNTLT---EI 142

Query: 403 SLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLL 462
            +   + L  L    N+    + +     T L TLD   N     I      +   +  L
Sbjct: 143 DVSHNTQLTELDCHLNKKITKLDV--TPQTQLTTLDCSFN----KITELDVSQNKLLNRL 196

Query: 463 ILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSF 522
              +NN       +L     L  LD + N L+  I   +  LT +   +  + N +    
Sbjct: 197 NCDTNNITKL---DLNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFD-CSVNPL---- 245

Query: 523 PLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSL 582
              + +   T+++   +          ++ +  ++I F          + +T+   +  L
Sbjct: 246 ---TELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLL 302

Query: 583 NLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIP 642
           +      T      +     L  +  +  + T E+   +S  T L  L+  N ++     
Sbjct: 303 DCQAAGIT---ELDLSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ-DFS 355

Query: 643 SSTQLQSFNASCFLGNNL 660
           S  ++ + N +       
Sbjct: 356 SVGKIPALNNNFEAEGQT 373

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 78.1 bits (192), Expect = 3e-15
 Identities = 73/382 (19%), Positives = 123/382 (32%), Gaps = 47/382 (12%)

Query: 288 SQLYLLDLGHNQIHGELTNLTKA--SQLSYLSLIANNFSGSLPLISSNLTVLELSGNSLS 345
           +Q   L L        L++L      Q++ L +  N    SLP + ++L  L+   N LS
Sbjct: 59  NQFSELQLNRLN----LSSLPDNLPPQITVLEITQNALI-SLPELPASLEYLDACDNRLS 113

Query: 346 GPIFHFLCYTINETM-KLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSL 404
                    T+ E    LK L +D N L   LP+       L  ++  NN+ T  LP   
Sbjct: 114 ---------TLPELPASLKHLDVDNNQLT-MLPELP---ALLEYINADNNQLT-MLPELP 159

Query: 405 GSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFS---RMVL 461
            SL  L    +R N+L+  +P L ++   L  LDV  N    ++P+            + 
Sbjct: 160 TSLEVL---SVRNNQLT-FLPELPES---LEALDVSTNL-LESLPAVPVRNHHSEETEIF 211

Query: 462 LILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATV---NPFTGNAI 518
              R N     +P  +  L     + L DN LS  I   +   TA         +   + 
Sbjct: 212 FRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSD 270

Query: 519 EYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKA 578
                L+  +               V+  ++   +      FS  L   +  +   N   
Sbjct: 271 GQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSG 330

Query: 579 VQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLT 638
                     F  ++   +  + +   +         +  +S      L   NL    L 
Sbjct: 331 ----------FREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLV 380

Query: 639 GKIPSSTQLQSFNASCFLGNNL 660
            +           A   LG  +
Sbjct: 381 HQASEGLFDNDTGALLSLGREM 402

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 75.4 bits (185), Expect = 2e-14
 Identities = 59/319 (18%), Positives = 108/319 (33%), Gaps = 59/319 (18%)

Query: 326 SLPLISSNLTVLE--LSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSY 383
           S+ L  +N   L      N++SG  +       ++  K      +RN     L +C +  
Sbjct: 2   SIMLPINNNFSLSQNSFYNTISG-TYADYFSAWDKWEKQALPGENRNEAVSLLKECLI-- 58

Query: 384 QNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENE 443
                L L+    + +LP +L     +  L + +N L  ++P L  +   L  LD  +N 
Sbjct: 59  NQFSELQLNRLNLS-SLPDNLPP--QITVLEITQNALI-SLPELPAS---LEYLDACDNR 111

Query: 444 VFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHN 503
               +P    E  + +  L + +N     LP     L   + ++  +N L+  +P    +
Sbjct: 112 -LSTLP----ELPASLKHLDVDNNQLTM-LPELPALL---EYINADNNQLT-MLPELPTS 161

Query: 504 LTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKN 563
           L  ++       N +    P                          E+   +  +D S N
Sbjct: 162 LEVLS----VRNNQLT-FLP--------------------------ELPESLEALDVSTN 190

Query: 564 LFSGTLPMGLTNL----KAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQ 619
           L   +LP          +         N  T  IPE I ++    +I    N  +  I +
Sbjct: 191 LLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRE 248

Query: 620 SMSSLTFLNHLNLSNNYLT 638
           S+S  T     +    Y +
Sbjct: 249 SLSQQTAQPDYHGPRIYFS 267

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 75.4 bits (185), Expect = 3e-14
 Identities = 64/288 (22%), Positives = 111/288 (38%), Gaps = 47/288 (16%)

Query: 157 SLALASSSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTK 216
           S     ++ISG   D    +   +   L   +           N+    L E      ++
Sbjct: 14  SQNSFYNTISGTYADYFSAWDKWEKQALPGENR----------NEAVSLLKECLINQFSE 63

Query: 217 LSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGIS 276
           L +     N+L L    D +PP Q+  L +    + S  P        L++LD  ++ +S
Sbjct: 64  LQL-----NRLNLSSLPDNLPP-QITVLEITQNALIS-LPELP---ASLEYLDACDNRLS 113

Query: 277 GTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKA-SQLSYLSLIANNFSGSLPLISSNLT 335
            T P       + L  LD+ +NQ    LT L +  + L Y++   NN    LP + ++L 
Sbjct: 114 -TLPELP----ASLKHLDVDNNQ----LTMLPELPALLEYINA-DNNQLTMLPELPTSLE 163

Query: 336 VLELSGNSLSGPIFHFLCYTINETM-KLKFLFLDRNILQGKLPDCWMSYQNL----MALD 390
           VL +  N L+          + E    L+ L +  N+L+  LP   +   +     +   
Sbjct: 164 VLSVRNNQLT---------FLPELPESLEALDVSTNLLES-LPAVPVRNHHSEETEIFFR 213

Query: 391 LSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLD 438
              N+ T ++P ++ SL    ++ L  N LS  I   L   T+     
Sbjct: 214 CRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYH 260

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 74.2 bits (182), Expect = 5e-14
 Identities = 55/340 (16%), Positives = 109/340 (32%), Gaps = 58/340 (17%)

Query: 1   MLPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLG 60
           ++    EL L+   L     LP      +T L+++ N   +  +P      + L +L+  
Sbjct: 57  LINQFSELQLNRLNL---SSLPDNLPPQITVLEITQNALIS--LPEL---PASLEYLDAC 108

Query: 61  YNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSM 120
            N     +PE      SLKHL +  N   + +P   +    LE+++   N L   +P   
Sbjct: 109 DNRLST-LPE---LPASLKHLDVDNNQL-TMLP---ELPALLEYINADNNQLT-MLPEL- 158

Query: 121 ARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNL- 179
               +L  L +   +L   + E+ E         LE+L ++++ +   L     +  +  
Sbjct: 159 --PTSLEVLSVRNNQLT-FLPELPE--------SLEALDVSTNLLE-SLPAVPVRNHHSE 206

Query: 180 ---DSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWI 236
                     N I                + E +  +L      ++  N L+        
Sbjct: 207 ETEIFFRCRENRIT--------------HIPE-NILSLDPTCTIILEDNPLSS------R 245

Query: 237 PPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYL---L 293
               L +   +    G R    +   +           ++  FP       SQ++     
Sbjct: 246 IRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEH 305

Query: 294 DLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLISSN 333
           +   N     L  L+        S      +  L  +S++
Sbjct: 306 EEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSAS 345

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 77.5 bits (190), Expect = 6e-15
 Identities = 52/219 (23%), Positives = 81/219 (36%), Gaps = 31/219 (14%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
           L S+ ++  +N  +       +     +T L L+ N+  +      +  L  L +L L  
Sbjct: 42  LNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP---LTNLKNLGWLFLDE 96

Query: 62  NNFQGPIP--EGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRS 119
           N     I     L++L  LK L L  N  S         L  LE L L  N +       
Sbjct: 97  NK----IKDLSSLKDLKKLKSLSLEHNGISDING--LVHLPQLESLYLGNNKIT--DITV 148

Query: 120 MARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNL 179
           ++RL  L  L L     NQ IS+I    +G     L++L L+ + IS      L   KNL
Sbjct: 149 LSRLTKLDTLSLED---NQ-ISDI-VPLAGLTK--LQNLYLSKNHISD--LRALAGLKNL 199

Query: 180 DSLDLSNNSIVGPRVLQLY-------LNKLHGTLSEIHF 211
           D L+L +   +   +           +    G+L     
Sbjct: 200 DVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEI 238

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 65.9 bits (160), Expect = 2e-11
 Identities = 47/251 (18%), Positives = 86/251 (34%), Gaps = 52/251 (20%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
               ++ +L    +           +++  +  +++             +  +       
Sbjct: 20  FAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSD------------IKSV------- 58

Query: 62  NNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMA 121
                   +G+Q L ++  L L  N  +   P     L +L  L L  N ++  +  S+ 
Sbjct: 59  --------QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLS-SLK 106

Query: 122 RLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDS 181
            L  L+ L L     N  IS+I           LESL L ++ I+      L +   LD+
Sbjct: 107 DLKKLKSLSLEH---NG-ISDI-NGLVHLPQ--LESLYLGNNKITD--ITVLSRLTKLDT 157

Query: 182 LDLSNNSIVGPRVLQ-------LYLNKLHGTLSEIH-FANLTKLSVFLVGANKLTLKVKR 233
           L L +N I     L        LYL+K H  +S++   A L  L V  + + +   K   
Sbjct: 158 LSLEDNQISDIVPLAGLTKLQNLYLSKNH--ISDLRALAGLKNLDVLELFSQECLNKPIN 215

Query: 234 DWIPPFQLIEL 244
                     +
Sbjct: 216 HQSNLVVPNTV 226

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 65.1 bits (158), Expect = 4e-11
 Identities = 46/263 (17%), Positives = 91/263 (34%), Gaps = 36/263 (13%)

Query: 240 QLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQ 299
           + I+  L+   V         +   +  +   NS I        ++    +  L L  N+
Sbjct: 22  ETIKDNLKKKSVTDAVTQNELNS--IDQIIANNSDIKSVQG---IQYLPNVTKLFLNGNK 76

Query: 300 IHGELTNLTKASQLSYLSLIANNFSGSLPLIS-SNLTVLELSGNSLS--GPIFHFLCYTI 356
           +  ++  LT    L +L L  N       L     L  L L  N +S    + H      
Sbjct: 77  LT-DIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDINGLVHLP---- 131

Query: 357 NETMKLKFLFLDRNILQ-----GKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLV 411
               +L+ L+L  N +       +L         L  L L +N+ + ++   L  L+ L 
Sbjct: 132 ----QLESLYLGNNKITDITVLSRLT-------KLDTLSLEDNQIS-DIV-PLAGLTKLQ 178

Query: 412 SLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDG 471
           +L+L KN +S      L    +L  L++   E      +      + +V   +++ +   
Sbjct: 179 NLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQ---SNLVVPNTVKNTDGSL 233

Query: 472 PLPTELCDLAFLQILDLADNNLS 494
             P  + D    +  ++  +   
Sbjct: 234 VTPEIISDDGDYEKPNVKWHLPE 256

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 56.7 bits (136), Expect = 2e-08
 Identities = 53/312 (16%), Positives = 93/312 (29%), Gaps = 92/312 (29%)

Query: 96  FDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGL 155
            D        +L   S+   +      L ++ ++    + +                   
Sbjct: 17  DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDI------------------- 55

Query: 156 ESLALASSSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEI-HFANL 214
                   S+ G     +    N+  L L+ N +                 ++I    NL
Sbjct: 56  -------KSVQG-----IQYLPNVTKLFLNGNKL-----------------TDIKPLTNL 86

Query: 215 TKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSG 274
             L    +  NK+              +   L+               K L+ L L ++G
Sbjct: 87  KNLGWLFLDENKIK------------DLS-SLKDL-------------KKLKSLSLEHNG 120

Query: 275 ISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLIS-SN 333
           IS       L    QL  L LG+N+I  ++T L++ ++L  LSL  N  S  +PL   + 
Sbjct: 121 ISDING---LVHLPQLESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQISDIVPLAGLTK 176

Query: 334 LTVLELSGNSLS--GPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDL 391
           L  L LS N +S    +             L  L L       K  +   +      +  
Sbjct: 177 LQNLYLSKNHISDLRALAGL--------KNLDVLELFSQECLNKPINHQSNLVVPNTVKN 228

Query: 392 SNNKFTGNLPTS 403
           ++         S
Sbjct: 229 TDGSLVTPEIIS 240

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 56.3 bits (135), Expect = 2e-08
 Identities = 49/279 (17%), Positives = 87/279 (31%), Gaps = 51/279 (18%)

Query: 173 LGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVK 232
              F      +L   S+                   +    L  +   +   + +     
Sbjct: 17  DDAFAETIKDNLKKKSVT----------------DAVTQNELNSIDQIIANNSDIK---- 56

Query: 233 RDWIPPFQ----LIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSAS 288
              +   Q    + +L L    +    PL   + K+L +L L  + I        LK   
Sbjct: 57  --SVQGIQYLPNVTKLFLNGNKLTDIKPL--TNLKNLGWLFLDENKIKDLSS---LKDLK 109

Query: 289 QLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLIS-SNLTVLELSGNSLS-- 345
           +L  L L HN I  ++  L    QL  L L  N  +    L   + L  L L  N +S  
Sbjct: 110 KLKSLSLEHNGIS-DINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI 168

Query: 346 GPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWM--SYQNLMALDLSNNKFTGNLPTS 403
            P+            KL+ L+L +N     + D       +NL  L+L + +        
Sbjct: 169 VPLAGLT--------KLQNLYLSKN----HISDLRALAGLKNLDVLELFSQECLNKPINH 216

Query: 404 LGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGEN 442
             +L    ++      L    P ++ +       +V  +
Sbjct: 217 QSNLVVPNTVKNTDGSL--VTPEIISDDGDYEKPNVKWH 253

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 50.1 bits (119), Expect = 2e-06
 Identities = 50/320 (15%), Positives = 93/320 (29%), Gaps = 76/320 (23%)

Query: 332 SNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDL 391
           +      L   S++  +      T NE   +  +  + + ++  +        N+  L L
Sbjct: 21  AETIKDNLKKKSVTDAV------TQNELNSIDQIIANNSDIK-SVQGIQ-YLPNVTKLFL 72

Query: 392 SNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSW 451
           + NK T ++   L +L +L  L L +N++       LK+   L +L +  N +  +I   
Sbjct: 73  NGNKLT-DI-KPLTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNGI-SDING- 126

Query: 452 FGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVN 511
                 ++  L L +N         L  L  L  L L DN +S  I   +  LT +  + 
Sbjct: 127 -LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLY 181

Query: 512 PFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPM 571
                                                N I +L                 
Sbjct: 182 ----------------------------------LSKNHISDL----------------R 191

Query: 572 GLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLN 631
            L  LK +  L L       +       +    ++  +          S       +  +
Sbjct: 192 ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIIS-------DDGD 244

Query: 632 LSNNYLTGKIPSSTQLQSFN 651
                +   +P  T   SF 
Sbjct: 245 YEKPNVKWHLPEFTNEVSFI 264

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 47.0 bits (111), Expect = 2e-05
 Identities = 24/115 (20%), Positives = 35/115 (30%), Gaps = 9/115 (7%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
           L  L  L L + Q+      P+A  + L  L LS N   +      + GL  L  L L  
Sbjct: 152 LTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHI-SDLRA--LAGLKNLDVLELFS 206

Query: 62  NNFQGPIPEGLQNLTSLKHL----GLPFNHFSSSVPKWFDRLTHLEHLSLSYNSL 112
                       NL     +    G        S    +++     HL    N +
Sbjct: 207 QECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEV 261

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 75.5 bits (186), Expect = 8e-15
 Identities = 37/219 (16%), Positives = 76/219 (34%), Gaps = 39/219 (17%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDN-------------------- 41
           L SL  LDLS   L +         S+LT L+L  N +                      
Sbjct: 99  LGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGN 158

Query: 42  ----SFVPAWVF-GLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWF 96
               + +    F GL+ L  L +  ++ Q   P+ L+++ ++ HL L        +  + 
Sbjct: 159 MDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFV 218

Query: 97  DRLTHLEHLSLSYN--------SLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFS 148
           D  + +E L L            L      S+ +    R + +     ++ + +++++ +
Sbjct: 219 DVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKIT----DESLFQVMKLLN 274

Query: 149 GCVSNGLESLALASSSISGHLTDQLGQFKNLDSLDLSNN 187
                 L  L  + + +         +  +L  + L  N
Sbjct: 275 QISG--LLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 74.4 bits (183), Expect = 2e-14
 Identities = 55/357 (15%), Positives = 104/357 (29%), Gaps = 61/357 (17%)

Query: 1   MLPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLG 60
           +    V   + +            +         S    ++  +P+ +     +  L+L 
Sbjct: 5   LWMVWVLGVIISLSKEESSNQASLSCDRNGICKGSSGSLNS--IPSGLT--EAVKSLDLS 60

Query: 61  YNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSM 120
            N         LQ   +L+ L L  N  ++     F  L  LEHL LSYN L   +  S 
Sbjct: 61  NNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSW 119

Query: 121 -ARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTD-QLGQFKN 178
              L +L  L L G   N        +    + + L  L +         T  Q   F  
Sbjct: 120 FKPLSSLTFLNLLG---NP----YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG 172

Query: 179 LDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPP 238
           L  L            L++  + L  +       ++  +S  ++   +  L      +  
Sbjct: 173 LTFL----------EELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHIL------LLE 215

Query: 239 FQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRL-------LKSASQLY 291
             +                       ++ L+L ++ +     + L       L       
Sbjct: 216 IFVDVT------------------SSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFR 257

Query: 292 LLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLIS----SNLTVLELSGNSL 344
            + +    +   +  L + S L  L    N    S+P       ++L  + L  N  
Sbjct: 258 NVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 71.3 bits (175), Expect = 2e-13
 Identities = 57/272 (20%), Positives = 100/272 (36%), Gaps = 31/272 (11%)

Query: 264 DLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIH----GELTNLTKASQLSYLSLI 319
            ++ LDL N+ I+    N  L+    L  L L  N I+       ++L     L +L L 
Sbjct: 53  AVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG---SLEHLDLS 108

Query: 320 ANNFSGSLPLIS----SNLTVLELSGNSLS--GPIFHFLCYTINETMKLKFLFLDRNILQ 373
            N  S +L        S+LT L L GN     G    F     +   KL+ L +      
Sbjct: 109 YNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLF-----SHLTKLQILRVGNMDTF 162

Query: 374 GKLPDCWMSY-QNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCT 432
            K+     +    L  L++  +      P SL S+ ++  L L   +    + I +   +
Sbjct: 163 TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTS 222

Query: 433 SLVTLDVGENEVFGNIPSWF--GERFSRMVLLILRSNNFDG----PLPTELCDLAFLQIL 486
           S+  L++ + ++     S    GE  S +     R+          +   L  ++ L  L
Sbjct: 223 SVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLEL 282

Query: 487 DLADNNLSGTIPNCIHNLTAMATV----NPFT 514
           + + N L          LT++  +    NP+ 
Sbjct: 283 EFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 70.1 bits (172), Expect = 4e-13
 Identities = 56/311 (18%), Positives = 103/311 (33%), Gaps = 54/311 (17%)

Query: 330 ISSNLTVLELSGN---SLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNL 386
           ++  +  L+LS N    +S              + L+ L L  N +     D + S  +L
Sbjct: 50  LTEAVKSLDLSNNRITYISNSDLQRC-------VNLQALVLTSNGINTIEEDSFSSLGSL 102

Query: 387 MALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIP--ILLKNCTSLVTLDVGENEV 444
             LDLS N  +    +    LSSL  L+L  N    T+    L  + T L  L VG  + 
Sbjct: 103 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDT 161

Query: 445 FGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNL 504
           F  I                   +F G        L FL+ L++  ++L    P  + ++
Sbjct: 162 FTKIQR----------------KDFAG--------LTFLEELEIDASDLQSYEPKSLKSI 197

Query: 505 TAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNL 564
             ++ +                     +V   EL           + L+     + S   
Sbjct: 198 QNVSHLI-LHMKQHI-LLLEIFVDVTSSVECLEL--------RDTD-LDTFHFSELSTGE 246

Query: 565 FSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSL 624
            +      L      +++ ++      ++ + +  +  L  ++FS N+           L
Sbjct: 247 TNS-----LIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRL 300

Query: 625 TFLNHLNLSNN 635
           T L  + L  N
Sbjct: 301 TSLQKIWLHTN 311

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 71.6 bits (176), Expect = 2e-14
 Identities = 29/135 (21%), Positives = 51/135 (37%), Gaps = 8/135 (5%)

Query: 3   PSLVELDLSNCQLHHFPQLPV-ANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLG 60
               EL L+N +        +      L  ++ S+N+   + +    F G S ++ + L 
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI--TDIEEGAFEGASGVNEILLT 89

Query: 61  YNNFQGPIPEGL-QNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRS 119
            N  +  +   + + L SLK L L  N  +      F  L+ +  LSL  N +   +   
Sbjct: 90  SNRLEN-VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT-TVAPG 147

Query: 120 M-ARLCNLRRLYLGG 133
               L +L  L L  
Sbjct: 148 AFDTLHSLSTLNLLA 162

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 68.5 bits (168), Expect = 3e-13
 Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 5/111 (4%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLG 60
           LP L +++ SN ++    +      S +  + L+ N+ +N  V   +F GL  L  L L 
Sbjct: 56  LPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN--VQHKMFKGLESLKTLMLR 113

Query: 61  YNNFQGPIPEGL-QNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYN 110
            N     +       L+S++ L L  N  ++  P  FD L  L  L+L  N
Sbjct: 114 SNRITC-VGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 63.9 bits (156), Expect = 1e-11
 Identities = 24/112 (21%), Positives = 41/112 (36%), Gaps = 4/112 (3%)

Query: 27  STLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEG-LQNLTSLKHLGLPF 85
                L L++N+F           L +L  +N   N     I EG  +  + +  + L  
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD-IEEGAFEGASGVNEILLTS 90

Query: 86  NHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSM-ARLCNLRRLYLGGAKL 136
           N   +   K F  L  L+ L L  N +   +       L ++R L L   ++
Sbjct: 91  NRLENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQI 141

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 32/163 (19%), Positives = 53/163 (32%), Gaps = 44/163 (26%)

Query: 57  LNLGYNNFQGPIPEGL-QNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGR 115
           L L  N F      G+ + L  L+ +    N  +      F+  + +  + L+ N LE  
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENV 96

Query: 116 IPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQ 175
             +    L +L+ L L                    SN +  +                 
Sbjct: 97  QHKMFKGLESLKTLMLR-------------------SNRITCV-------------GNDS 124

Query: 176 FKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLS 218
           F  L S+          R+L LY N++  T++   F  L  LS
Sbjct: 125 FIGLSSV----------RLLSLYDNQIT-TVAPGAFDTLHSLS 156

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 32/158 (20%), Positives = 58/158 (36%), Gaps = 30/158 (18%)

Query: 264 DLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNF 323
               L L N+  +      + K   QL  ++  +N+I                 +    F
Sbjct: 33  YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT---------------DIEEGAF 77

Query: 324 SGSLPLISSNLTVLELSGN---SLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCW 380
            G     +S +  + L+ N   ++   +F  L         LK L L  N +     D +
Sbjct: 78  EG-----ASGVNEILLTSNRLENVQHKMFKGL-------ESLKTLMLRSNRITCVGNDSF 125

Query: 381 MSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKN 418
           +   ++  L L +N+ T   P +  +L SL +L+L  N
Sbjct: 126 IGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 27/146 (18%), Positives = 54/146 (36%), Gaps = 14/146 (9%)

Query: 330 ISSNLTVLELSGNSLS----GPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQN 385
           I      L L+ N  +      IF  L        +L+ +    N +       +     
Sbjct: 30  IPQYTAELRLNNNEFTVLEATGIFKKL-------PQLRKINFSNNKITDIEEGAFEGASG 82

Query: 386 LMALDLSNNKFTGNLPTSL-GSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEV 444
           +  + L++N+   N+   +   L SL +L LR NR++          +S+  L + +N+ 
Sbjct: 83  VNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ- 140

Query: 445 FGNIPSWFGERFSRMVLLILRSNNFD 470
              +     +    +  L L +N F+
Sbjct: 141 ITTVAPGAFDTLHSLSTLNLLANPFN 166

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 68.1 bits (167), Expect = 3e-13
 Identities = 27/170 (15%), Positives = 62/170 (36%), Gaps = 15/170 (8%)

Query: 21  LPVANFSTLTTLDLSHNQFDN-SFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLK 79
           +  A  ++LT + L++    + + +         +  L +   +        +  L++L+
Sbjct: 38  ITEAQMNSLTYITLANINVTDLTGIE----YAHNIKDLTINNIHATNY--NPISGLSNLE 91

Query: 80  HLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQE 139
            L +     +S        LT L  L +S+++ +  I   +  L  +  + L     N  
Sbjct: 92  RLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSY---NGA 148

Query: 140 ISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLDLSNNSI 189
           I++I           L+SL +    +       +  F  L+ L   + +I
Sbjct: 149 ITDI-MPLKTLPE--LKSLNIQFDGVHD--YRGIEDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.3 bits (121), Expect = 3e-07
 Identities = 34/222 (15%), Positives = 69/222 (31%), Gaps = 46/222 (20%)

Query: 278 TFPNRLLKSASQLYLLDLGHNQIHGELTNLTKA--SQLSYLSLIANNFSGSLPLIS--SN 333
             P+   K+     L   G +       N+T+A  + L+Y++L   N +  L  I    N
Sbjct: 16  NIPDSTFKAYLNGLL---GQSST----ANITEAQMNSLTYITLANINVT-DLTGIEYAHN 67

Query: 334 LTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSN 393
           +  L ++    +                   +          L        NL  L +  
Sbjct: 68  IKDLTINNIHAT---------------NYNPI--------SGLS-------NLERLRIMG 97

Query: 394 NKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFG 453
              T +   +L  L+SL  L +  +    +I   +     + ++D+  N    +I     
Sbjct: 98  KDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPL-- 155

Query: 454 ERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSG 495
           +    +  L ++ +         + D   L  L      + G
Sbjct: 156 KTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 4/89 (4%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
           L SL  LD+S+          +     + ++DLS+N      +P  +  L  L  LN+ +
Sbjct: 111 LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQF 168

Query: 62  NNFQGPIPEGLQNLTSLKHLGLPFNHFSS 90
           +        G+++   L  L         
Sbjct: 169 DGVHDY--RGIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.5 bits (111), Expect = 6e-06
 Identities = 23/111 (20%), Positives = 42/111 (37%), Gaps = 5/111 (4%)

Query: 547 DYNEILNLV--RIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLE 604
           +YN I  L     +       +      L+ L ++  L++S++     I   I T+  + 
Sbjct: 80  NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVN 139

Query: 605 SIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSS--TQLQSFNAS 653
           SID S N    +I   + +L  L  LN+  + +          +L    A 
Sbjct: 140 SIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAF 189

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.5 bits (111), Expect = 7e-06
 Identities = 30/179 (16%), Positives = 62/179 (34%), Gaps = 33/179 (18%)

Query: 153 NGLESLALASSSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEI-HF 211
           N L  + LA+ +++  LT  +    N+  L ++N                    +     
Sbjct: 44  NSLTYITLANINVT-DLTG-IEYAHNIKDLTINNIHA-----------------TNYNPI 84

Query: 212 ANLTKLSVFLVGANKLTLKVKRDWIPPF----QLIELGLRSCDVGSRFPLWLYSQKDLQF 267
           + L+ L    +    +T     D IP       L  L +            + +   +  
Sbjct: 85  SGLSNLERLRIMGKDVT----SDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNS 140

Query: 268 LDL-FNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSG 325
           +DL +N  I+   P   LK+  +L  L++  + +H +   +    +L+ L   +    G
Sbjct: 141 IDLSYNGAITDIMP---LKTLPELKSLNIQFDGVH-DYRGIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 22/127 (17%), Positives = 51/127 (40%), Gaps = 6/127 (4%)

Query: 385 NLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEV 444
           +L  + L+N   T +L T +    ++  L +     +   P  +   ++L  L +   +V
Sbjct: 45  SLTYITLANINVT-DL-TGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDV 100

Query: 445 FGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNL 504
             +         + + LL +  +  D  + T++  L  +  +DL+ N     I   +  L
Sbjct: 101 TSDKIPNLSG-LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTL 158

Query: 505 TAMATVN 511
             + ++N
Sbjct: 159 PELKSLN 165

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 68.6 bits (168), Expect = 3e-13
 Identities = 39/127 (30%), Positives = 55/127 (43%), Gaps = 6/127 (4%)

Query: 12  NCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLGYNNFQGPIPE 70
           +C+      +P    +    L L  NQ   + +   VF  L  L  L LG N     +P 
Sbjct: 25  DCRSKRHASVPAGIPTNAQILYLHDNQI--TKLEPGVFDSLINLKELYLGSNQLGA-LPV 81

Query: 71  GL-QNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRL 129
           G+  +LT L  L L  N  +      FDRL HL+ L +  N L   +PR + RL +L  L
Sbjct: 82  GVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHL 140

Query: 130 YLGGAKL 136
            L   +L
Sbjct: 141 ALDQNQL 147

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 63.9 bits (156), Expect = 1e-11
 Identities = 39/127 (30%), Positives = 57/127 (44%), Gaps = 6/127 (4%)

Query: 7   ELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLGYNNFQ 65
            L L + Q+         +   L  L L  NQ     +P  VF  L++L  L+LG N   
Sbjct: 44  ILYLHDNQITKLEPGVFDSLINLKELYLGSNQL--GALPVGVFDSLTQLTVLDLGTNQLT 101

Query: 66  GPIPEGL-QNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLC 124
             +P  +   L  LK L +  N  +  +P+  +RLTHL HL+L  N L+     +  RL 
Sbjct: 102 V-LPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLS 159

Query: 125 NLRRLYL 131
           +L   YL
Sbjct: 160 SLTHAYL 166

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 60.9 bits (148), Expect = 1e-10
 Identities = 43/113 (38%), Positives = 54/113 (47%), Gaps = 10/113 (8%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANF---STLTTLDLSHNQFDNSFVPAWVFG-LSRLHFL 57
           L +L EL L + QL     LPV  F   + LT LDL  NQ   + +P+ VF  L  L  L
Sbjct: 63  LINLKELYLGSNQL---GALPVGVFDSLTQLTVLDLGTNQL--TVLPSAVFDRLVHLKEL 117

Query: 58  NLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYN 110
            +  N     +P G++ LT L HL L  N   S     FDRL+ L H  L  N
Sbjct: 118 FMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 68.2 bits (167), Expect = 7e-13
 Identities = 44/128 (34%), Positives = 59/128 (46%), Gaps = 7/128 (5%)

Query: 7   ELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLGYNNFQ 65
           +LDL +  L           + LT L+L +NQ     + A VF  L+ L  L L  N   
Sbjct: 39  KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL--QTLSAGVFDDLTELGTLGLANNQLA 96

Query: 66  GPIPEGL-QNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSM-ARL 123
             +P G+  +LT L  L L  N   S     FDRLT L+ L L+ N L+  IP     +L
Sbjct: 97  S-LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKL 154

Query: 124 CNLRRLYL 131
            NL+ L L
Sbjct: 155 TNLQTLSL 162

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 67.8 bits (166), Expect = 9e-13
 Identities = 47/133 (35%), Positives = 67/133 (50%), Gaps = 7/133 (5%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLG 60
           L  L  L+L   QL         + + L TL L++NQ   + +P  VF  L++L  L LG
Sbjct: 58  LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL--ASLPLGVFDHLTQLDKLYLG 115

Query: 61  YNNFQGPIPEGL-QNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPR- 118
            N  +  +P G+   LT LK L L  N   S     FD+LT+L+ LSLS N L+  +P  
Sbjct: 116 GNQLKS-LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHG 173

Query: 119 SMARLCNLRRLYL 131
           +  RL  L+ + L
Sbjct: 174 AFDRLGKLQTITL 186

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 60.9 bits (148), Expect = 2e-10
 Identities = 39/111 (35%), Positives = 51/111 (45%), Gaps = 5/111 (4%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLG 60
           L  L  L L+N QL   P     + + L  L L  NQ     +P+ VF  L++L  L L 
Sbjct: 82  LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQL--KSLPSGVFDRLTKLKELRLN 139

Query: 61  YNNFQGPIPEGL-QNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYN 110
            N  Q  IP G    LT+L+ L L  N   S     FDRL  L+ ++L  N
Sbjct: 140 TNQLQS-IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 46.6 bits (111), Expect = 9e-06
 Identities = 25/80 (31%), Positives = 32/80 (40%)

Query: 57  LNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRI 116
           L+L             + LT L  L L +N   +     FD LT L  L L+ N L    
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99

Query: 117 PRSMARLCNLRRLYLGGAKL 136
                 L  L +LYLGG +L
Sbjct: 100 LGVFDHLTQLDKLYLGGNQL 119

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 38/164 (23%), Positives = 52/164 (31%), Gaps = 41/164 (25%)

Query: 76  TSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAK 135
              + L L     ++     F  LT L  L+L YN L+         L  L  L L    
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA--- 91

Query: 136 LNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLDLSNNSIVG--PR 193
                           +N L SL      +  HLT        LD L L  N +      
Sbjct: 92  ----------------NNQLASL---PLGVFDHLT-------QLDKLYLGGNQLKSLPSG 125

Query: 194 V---------LQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLT 228
           V         L+L  N+L  ++    F  LT L    +  N+L 
Sbjct: 126 VFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQ 168

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 31/92 (33%), Positives = 39/92 (42%), Gaps = 11/92 (11%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLT---TLDLSHNQFDNSFVPAWVF-GLSRLHFL 57
           L  L +L L   QL     LP   F  LT    L L+ NQ     +PA  F  L+ L  L
Sbjct: 106 LTQLDKLYLGGNQLK---SLPSGVFDRLTKLKELRLNTNQL--QSIPAGAFDKLTNLQTL 160

Query: 58  NLGYNNFQGPIPEG-LQNLTSLKHLGLPFNHF 88
           +L  N  Q  +P G    L  L+ + L  N F
Sbjct: 161 SLSTNQLQS-VPHGAFDRLGKLQTITLFGNQF 191

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 70.7 bits (172), Expect = 1e-12
 Identities = 64/456 (14%), Positives = 120/456 (26%), Gaps = 141/456 (30%)

Query: 27  STLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFN 86
           + +                   F +    +LNL   N    + E LQ L           
Sbjct: 164 TWVALDVCL----SYKVQCKMDFKI---FWLNLKNCNSPETVLEMLQKL----------- 205

Query: 87  HFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMAR------------LCNLRRL----- 129
                 P W  R  H  ++ L  +S++  + R +              + N +       
Sbjct: 206 -LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL 264

Query: 130 ---------------YLGGAKLNQEI----------SEILEIFSGCVSNGLESLA----- 159
                          +L  A                 E+  +    +    + L      
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324

Query: 160 ---LASSSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTK 216
                 S I+  + D L  + N   ++    +     +++  LN L        F    +
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLT----TIIESSLNVLEPAEYRKMF---DR 377

Query: 217 LSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKD--LQFLD-LFNS 273
           LSVF   A+          IP   L+ L            +W    K   +  ++ L   
Sbjct: 378 LSVFPPSAH----------IPT-ILLSL------------IWFDVIKSDVMVVVNKLHKY 414

Query: 274 GISGTFPNRLLKSASQLYLLDLGHN----QIHGELTNLTKASQLSYLSLIANNFSGSLPL 329
            +    P     S   +YL           +H  + +        Y   I   F      
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD-------HY--NIPKTFDSD--- 462

Query: 330 ISSNLTVLELSGNSLSGPIFHFLCY---TINETMKLKF---LFLDRNILQGKL------P 377
                   +L    L    +  + +    I    ++     +FLD   L+ K+       
Sbjct: 463 --------DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAW 514

Query: 378 DCWMSYQNLMALDLSNNK--FTGNLPTSLGSLSSLV 411
           +   S  N +   L   K     N P     +++++
Sbjct: 515 NASGSILNTL-QQLKFYKPYICDNDPKYERLVNAIL 549

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 8e-06
 Identities = 65/449 (14%), Positives = 135/449 (30%), Gaps = 95/449 (21%)

Query: 281 NRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLELS 340
             +L      ++ +     +     ++    ++ ++ +  +  SG+L L       L   
Sbjct: 19  KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF----WTLLSK 74

Query: 341 GNSLSGPIFHFLCYTINETMKLKFLFLDRNI-LQGKLPDCWMSYQNLMALDLSNNKFTGN 399
              +   +  F    + E +++ + FL   I  + + P    S    M ++  +  +  N
Sbjct: 75  QEEM---VQKF----VEEVLRINYKFLMSPIKTEQRQP----SMMTRMYIEQRDRLYNDN 123

Query: 400 LPTSLGSLSSLVSLHLRKNRLSGTIP---ILL-------KNC-TSLVTLDVGENEVFGNI 448
              +  ++S L      +  L    P   +L+       K      V L           
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK 183

Query: 449 PSW--FGERFSRMVLLILRSN---NFDGPLPTELCDLAFLQILDL--ADNNLSGTI---- 497
             W       S   +L +        D    T   D +    L +      L   +    
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNW-TSRSDHSSNIKLRIHSIQAELRRLLKSKP 242

Query: 498 -PNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVR 556
             NC   L  +  V      A   +F L+  I    +T +   VT  ++A     ++L  
Sbjct: 243 YENC---LLVLLNVQ--NAKAWN-AFNLSCKI---LLTTRFKQVTDFLSAATTTHISLDH 293

Query: 557 II-----DFSKNLFSGTLPMGLTNLK--AVQSLNLSYNIFTGRIPETIGTMRSLESIDFS 609
                  D  K+L    L     +L    + +     +I    I + + T  + + ++  
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC- 352

Query: 610 VNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSSTQLQSFNASCFLGNNLCGAPLPKNC 669
            +K T  I  S      LN L           P+  + + F+    +         P   
Sbjct: 353 -DKLTTIIESS------LNVLE----------PAEYR-KMFD-RLSV--------FP--- 382

Query: 670 TDENVSIPEDV------NGEEDEDENDVD 692
              +  IP  +      +  + +    V+
Sbjct: 383 --PSAHIPTILLSLIWFDVIKSDVMVVVN 409

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 68.3 bits (167), Expect = 2e-12
 Identities = 39/221 (17%), Positives = 67/221 (30%), Gaps = 22/221 (9%)

Query: 12  NCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLGYNNFQGPIPE 70
            CQ     ++P         L     +     +    F G   L  + +  N+    I  
Sbjct: 15  LCQESKVTEIPSDLPRNAIELRFVLTKL--RVIQKGAFSGFGDLEKIEISQNDVLEVIEA 72

Query: 71  G-LQNLTSLKHLGLP-FNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRR 128
               NL  L  + +   N+     P+ F  L +L++L +S   ++               
Sbjct: 73  DVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVL 132

Query: 129 LYLGGAKLNQEISEILE-IFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLDLSNN 187
           L +     N  I  I    F G        L L  + I           +  +     NN
Sbjct: 133 LDIQD---NINIHTIERNSFVGLSFE-SVILWLNKNGIQEIHNSAFNGTQLDELNLSDNN 188

Query: 188 SI-----------VGPRVLQLYLNKLHGTLSEIHFANLTKL 217
           ++            GP +L +   ++H +L      NL KL
Sbjct: 189 NLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKL 228

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 67.2 bits (164), Expect = 5e-12
 Identities = 32/133 (24%), Positives = 44/133 (33%), Gaps = 5/133 (3%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLS-RLHFLNL 59
           LP+L  L +SN  + H P +   +      LD+  N      +    F GLS     L L
Sbjct: 103 LPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN-IHTIERNSFVGLSFESVILWL 161

Query: 60  GYNNFQGPIPEGLQNLTSLKHLGLPF-NHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPR 118
             N  Q  I     N T L  L L   N+        F   +    L +S   +      
Sbjct: 162 NKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY 220

Query: 119 SMARLCNLRRLYL 131
            +  L  LR    
Sbjct: 221 GLENLKKLRARST 233

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 62.5 bits (152), Expect = 1e-10
 Identities = 33/198 (16%), Positives = 67/198 (33%), Gaps = 16/198 (8%)

Query: 2   LPSLVELDLSNCQLHHFPQLPV-ANFSTLTTLDLSH-NQFDNSFVPAWVF-GLSRLHFLN 58
              L ++++S   +    +  V +N   L  + +   N     ++    F  L  L +L 
Sbjct: 53  FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNL--LYINPEAFQNLPNLQYLL 110

Query: 59  LGYNNFQGPIPEGL-QNLTSLKHLGLPFNHFSSSVP-KWFDRLTH-LEHLSLSYNSLEGR 115
           +     +  +P+    +      L +  N    ++    F  L+     L L+ N ++  
Sbjct: 111 ISNTGIKH-LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-E 168

Query: 116 IPRSMARLCNLRRLYLGGAKLNQEISEI-LEIFSGCVSNGLESLALASSSISGHLTDQLG 174
           I  S      L  L L     N  + E+  ++F G        L ++ + I    +  L 
Sbjct: 169 IHNSAFNGTQLDELNLSD---NNNLEELPNDVFHGASG--PVILDISRTRIHSLPSYGLE 223

Query: 175 QFKNLDSLDLSNNSIVGP 192
             K L +    N   +  
Sbjct: 224 NLKKLRARSTYNLKKLPT 241

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 54.8 bits (132), Expect = 4e-08
 Identities = 22/112 (19%), Positives = 36/112 (32%), Gaps = 7/112 (6%)

Query: 1   MLPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNL 59
           +    V L L+   +                    +N  +   +P  VF G S    L++
Sbjct: 152 LSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEE--LPNDVFHGASGPVILDI 209

Query: 60  GYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNS 111
                      GL+NL  L+            +P   ++L  L   SL+Y S
Sbjct: 210 SRTRIHSLPSYGLENLKKLRARSTYNL---KKLP-TLEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 54.4 bits (131), Expect = 5e-08
 Identities = 49/276 (17%), Positives = 87/276 (31%), Gaps = 65/276 (23%)

Query: 176 FKNLDSLDLSNNSI--VGP---------RVLQLYLNKLHGTLSEIHFANLTKLSV-FLVG 223
            +N   L      +  +             +++  N +   +    F+NL KL    +  
Sbjct: 29  PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88

Query: 224 ANKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRL 283
           AN L       +I P     L                   +LQ+L + N+GI    P+  
Sbjct: 89  ANNLL------YINPEAFQNL------------------PNLQYLLISNTGIK-HLPDVH 123

Query: 284 LKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNS 343
              + Q  LLD+  N              +  +    N+F G    +S    +L L+ N 
Sbjct: 124 KIHSLQKVLLDIQDN------------INIHTIE--RNSFVG----LSFESVILWLNKNG 165

Query: 344 LSG-PIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPT 402
           +       F     N T   +    D N L+    D +      + LD+S  +       
Sbjct: 166 IQEIHNSAF-----NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY 220

Query: 403 SLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLD 438
            L +L  L +      +    +P  L+   +L+   
Sbjct: 221 GLENLKKLRARSTYNLK---KLPT-LEKLVALMEAS 252

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 52.5 bits (126), Expect = 2e-07
 Identities = 39/316 (12%), Positives = 78/316 (24%), Gaps = 34/316 (10%)

Query: 385 NLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPI-LLKNCTSLVTLDVGENE 443
           N + L     K       +      L  + + +N +   I   +  N   L  + + +  
Sbjct: 31  NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 444 VFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIP-NCIH 502
               I     +    +  L++ +                  +LD+ DN    TI  N   
Sbjct: 91  NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV 150

Query: 503 NLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSK 562
            L+  + +     N I         I                         L  +     
Sbjct: 151 GLSFESVILWLNKNGI-------QEIHNSAFNG----------------TQLDELNLSDN 187

Query: 563 NLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMS 622
           N                  L++S           +  ++ L +      K   ++P ++ 
Sbjct: 188 NNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLP-TLE 243

Query: 623 SLTFLNHLNLSNNY-LTGKIPSSTQLQSFNASCFLGNNLCGAPLPKNCTDENVSIPED-- 679
            L  L   +L+             Q+   +  C                 +  S+ ED  
Sbjct: 244 KLVALMEASLTYPSHCCAFANWRRQISELHPICNKSILRQEVDYMTQARGQRSSLAEDNE 303

Query: 680 --VNGEEDEDENDVDY 693
              +   D    + DY
Sbjct: 304 SSYSRGFDMTYTEFDY 319

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 47.1 bits (112), Expect = 1e-05
 Identities = 34/179 (18%), Positives = 62/179 (34%), Gaps = 20/179 (11%)

Query: 330 ISSNLTVLELSGNSLSGPIFHFLCYTINETM-----KLKFLFLDRN-ILQGKLPDCWMSY 383
           +  N   L      L           I +        L+ + + +N +L+    D + + 
Sbjct: 28  LPRNAIELRFVLTKLR---------VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNL 78

Query: 384 QNLMALDLSN-NKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLK-NCTSLVTLDVGE 441
             L  + +   N      P +  +L +L  L +    +   +P + K +    V LD+ +
Sbjct: 79  PKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQD 137

Query: 442 NEVFGNIPS-WFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPN 499
           N     I    F       V+L L  N     +     +   L  L+L+DNN    +PN
Sbjct: 138 NINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPN 195

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 67.8 bits (166), Expect = 2e-12
 Identities = 47/228 (20%), Positives = 79/228 (34%), Gaps = 36/228 (15%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
           L  +  L      +       V   + L  L+L  NQ  +  +   +  L+++  L L  
Sbjct: 40  LDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITD--LAP-LKNLTKITELELSG 94

Query: 62  NNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMA 121
           N  +      +  L S+K L L     +   P     L++L+ L L  N +    P  +A
Sbjct: 95  NPLK--NVSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LA 148

Query: 122 RLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDS 181
            L NL+ L +G A+++      L   +      L +L    + IS      L    NL  
Sbjct: 149 GLTNLQYLSIGNAQVSD-----LTPLANLSK--LTTLKADDNKISD--ISPLASLPNLIE 199

Query: 182 LDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTL 229
           + L NN I                      AN + L +  +    +T 
Sbjct: 200 VHLKNNQIS----------------DVSPLANTSNLFIVTLTNQTITN 231

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 62.4 bits (152), Expect = 1e-10
 Identities = 60/328 (18%), Positives = 102/328 (31%), Gaps = 88/328 (26%)

Query: 22  PVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHL 81
           P    +    +    +   ++   A    L  +  L+           EG+Q L +L  L
Sbjct: 14  PDPALANAIKIAAGKSNVTDTVTQA---DLDGITTLSAFGTGVTTI--EGVQYLNNLIGL 68

Query: 82  GLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEIS 141
            L  N  +   P     LT +  L LS N L  +   ++A L +++ L L     + +I+
Sbjct: 69  ELKDNQITDLAP--LKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLT----STQIT 120

Query: 142 EILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNK 201
           ++                             L    NL  L L  N I            
Sbjct: 121 DV---------------------------TPLAGLSNLQVLYLDLNQI------------ 141

Query: 202 LHGTLSEI-HFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLY 260
                + I   A LT L    +G  +++       + P                      
Sbjct: 142 -----TNISPLAGLTNLQYLSIGNAQVSD------LTPLA-------------------- 170

Query: 261 SQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIA 320
           +   L  L   ++ IS   P   L S   L  + L +NQI  +++ L   S L  ++L  
Sbjct: 171 NLSKLTTLKADDNKISDISP---LASLPNLIEVHLKNNQIS-DVSPLANTSNLFIVTLTN 226

Query: 321 NNFSGSLPLISSNLTVLELSGNSLSGPI 348
              +      ++NL V  +       PI
Sbjct: 227 QTITNQPVFYNNNLVVPNVVKGPSGAPI 254

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 58.2 bits (141), Expect = 3e-09
 Identities = 51/242 (21%), Positives = 94/242 (38%), Gaps = 26/242 (10%)

Query: 272 NSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLIS 331
            + I+  FP     + +    +  G + +  +         ++ LS      + ++  + 
Sbjct: 6   PTAINVIFP---DPALANAIKIAAGKSNV-TDTVTQADLDGITTLSAFGTGVT-TIEGVQ 60

Query: 332 --SNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMAL 389
             +NL  LEL  N ++  +      T     K+  L L  N L+          Q++  L
Sbjct: 61  YLNNLIGLELKDNQITD-LAPLKNLT-----KITELELSGNPLKNVSAIA--GLQSIKTL 112

Query: 390 DLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIP 449
           DL++ + T    T L  LS+L  L+L  N+++   P  L   T+L  L +G  +V  ++ 
Sbjct: 113 DLTSTQITD--VTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQV-SDLT 167

Query: 450 SWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMAT 509
                  S++  L    N      P  L  L  L  + L +N +S   P  + N + +  
Sbjct: 168 P--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFI 221

Query: 510 VN 511
           V 
Sbjct: 222 VT 223

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 43/243 (17%), Positives = 92/243 (37%), Gaps = 35/243 (14%)

Query: 404 LGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLI 463
             +L++ + +   K+ ++ T+     +   + TL      V   I     +  + ++ L 
Sbjct: 15  DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGV-TTIEGV--QYLNNLIGLE 69

Query: 464 LRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFP 523
           L+ N      P  L +L  +  L+L+ N L   +   I  L ++ T++  T   I    P
Sbjct: 70  LKDNQITDLAP--LKNLTKITELELSGNPLK-NVSA-IAGLQSIKTLD-LTSTQITDVTP 124

Query: 524 LNSTIGPGTVTEQELVVTKGVAADYNEILNL--------VRIIDFSKNLFSGTLPMGLTN 575
           L             L   + +  D N+I N+        ++ +       S   P  L N
Sbjct: 125 LAG-----------LSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP--LAN 171

Query: 576 LKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNN 635
           L  + +L    N  +      + ++ +L  +    N+ +   P  +++ + L  + L+N 
Sbjct: 172 LSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQ 227

Query: 636 YLT 638
            +T
Sbjct: 228 TIT 230

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 24/111 (21%), Positives = 41/111 (36%), Gaps = 7/111 (6%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
           L +L  L + N Q+      P+AN S LTTL    N+  +    A    L  L  ++L  
Sbjct: 150 LTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISDISPLA---SLPNLIEVHLKN 204

Query: 62  NNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSL 112
           N         L N ++L  + L     ++    + + L     +     + 
Sbjct: 205 NQISD--VSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAP 253

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 66.2 bits (162), Expect = 5e-12
 Identities = 45/133 (33%), Positives = 66/133 (49%), Gaps = 7/133 (5%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLG 60
           L +L  L L+  QL   P       + L  L L  NQ     +P  VF  L+ L +LNL 
Sbjct: 84  LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL--QSLPDGVFDKLTNLTYLNLA 141

Query: 61  YNNFQGPIPEGL-QNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRS 119
           +N  Q  +P+G+   LT+L  L L +N   S     FD+LT L+ L L  N L+  +P  
Sbjct: 142 HNQLQS-LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK-SVPDG 199

Query: 120 M-ARLCNLRRLYL 131
           +  RL +L+ ++L
Sbjct: 200 VFDRLTSLQYIWL 212

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 65.0 bits (159), Expect = 1e-11
 Identities = 46/134 (34%), Positives = 66/134 (49%), Gaps = 11/134 (8%)

Query: 2   LPSLVELDLSNCQLHHFPQLPV-ANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNL 59
           LP++  L L   +LH    +      + LT L L+ NQ     +P  VF  L+ L  L L
Sbjct: 62  LPNVRYLALGGNKLH---DISALKELTNLTYLILTGNQL--QSLPNGVFDKLTNLKELVL 116

Query: 60  GYNNFQGPIPEGL-QNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPR 118
             N  Q  +P+G+   LT+L +L L  N   S     FD+LT+L  L LSYN L+  +P 
Sbjct: 117 VENQLQS-LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPE 174

Query: 119 SM-ARLCNLRRLYL 131
            +  +L  L+ L L
Sbjct: 175 GVFDKLTQLKDLRL 188

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 46/112 (41%), Positives = 59/112 (52%), Gaps = 7/112 (6%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLG 60
           L +L EL L   QL   P       + LT L+L+HNQ  +  +P  VF  L+ L  L+L 
Sbjct: 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQS--LPKGVFDKLTNLTELDLS 165

Query: 61  YNNFQGPIPEGL-QNLTSLKHLGLPFNHFSSSVPK-WFDRLTHLEHLSLSYN 110
           YN  Q  +PEG+   LT LK L L  N   S VP   FDRLT L+++ L  N
Sbjct: 166 YNQLQS-LPEGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 41/220 (18%), Positives = 71/220 (32%), Gaps = 56/220 (25%)

Query: 12  NCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEG 71
                     P   F+     +L       +        L+ +  +    ++ +    +G
Sbjct: 4   TVSTPIKQIFPDDAFAETIKANLKKKSV--TDAVTQN-ELNSIDQIIANNSDIKSV--QG 58

Query: 72  LQNLTSLKHLGLPFNHFSS-SVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLY 130
           +Q L ++++L L  N     S       LT+L +L L+ N L+        +L NL+ L 
Sbjct: 59  IQYLPNVRYLALGGNKLHDISA---LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115

Query: 131 LGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLDLSNNSIV 190
           L                     N L+SL      +   LT       NL  L+L++N + 
Sbjct: 116 LV-------------------ENQLQSL---PDGVFDKLT-------NLTYLNLAHNQLQ 146

Query: 191 G--PRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLT 228
                V                F  LT L+   +  N+L 
Sbjct: 147 SLPKGV----------------FDKLTNLTELDLSYNQLQ 170

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 40.8 bits (96), Expect = 9e-04
 Identities = 45/190 (23%), Positives = 71/190 (37%), Gaps = 39/190 (20%)

Query: 57  LNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRI 116
            NL   +    + +    L S+  +    +   S        L ++ +L+L  N L   I
Sbjct: 24  ANLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKLH-DI 78

Query: 117 PRSMARLCNLRRLYLGGAKLNQEISEILEIFSG--------CVSNGLESLALASSSISGH 168
             ++  L NL  L L G +L Q +     +F           V N L+SL      +   
Sbjct: 79  S-ALKELTNLTYLILTGNQL-QSLPN--GVFDKLTNLKELVLVENQLQSL---PDGVFDK 131

Query: 169 LTDQLGQFKNLDSLDLSNNSIVG--PRV---------LQLYLNKLHGTLSEIHFANLTKL 217
           LT       NL  L+L++N +      V         L L  N+L  +L E  F  LT+L
Sbjct: 132 LT-------NLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQL 183

Query: 218 SVFLVGANKL 227
               +  N+L
Sbjct: 184 KDLRLYQNQL 193

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 63.5 bits (155), Expect = 1e-11
 Identities = 44/128 (34%), Positives = 61/128 (47%), Gaps = 7/128 (5%)

Query: 7   ELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLGYNNFQ 65
            LDL    L   P       ++LT L L  N+     +P  VF  L+ L +LNL  N  Q
Sbjct: 32  YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKL--QSLPNGVFNKLTSLTYLNLSTNQLQ 89

Query: 66  GPIPEGL-QNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSM-ARL 123
             +P G+   LT LK L L  N   S     FD+LT L+ L L  N L+  +P  +  RL
Sbjct: 90  S-LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRL 147

Query: 124 CNLRRLYL 131
            +L+ ++L
Sbjct: 148 TSLQYIWL 155

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 55.5 bits (134), Expect = 7e-09
 Identities = 43/112 (38%), Positives = 57/112 (50%), Gaps = 7/112 (6%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLG 60
           L SL +L L   +L   P       ++LT L+LS NQ     +P  VF  L++L  L L 
Sbjct: 51  LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL--QSLPNGVFDKLTQLKELALN 108

Query: 61  YNNFQGPIPEGL-QNLTSLKHLGLPFNHFSSSVPK-WFDRLTHLEHLSLSYN 110
            N  Q  +P+G+   LT LK L L  N   S VP   FDRLT L+++ L  N
Sbjct: 109 TNQLQS-LPDGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 25/80 (31%), Positives = 36/80 (45%)

Query: 57  LNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRI 116
           L+L  N+ +         LTSL  L L  N   S     F++LT L +L+LS N L+   
Sbjct: 33  LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92

Query: 117 PRSMARLCNLRRLYLGGAKL 136
                +L  L+ L L   +L
Sbjct: 93  NGVFDKLTQLKELALNTNQL 112

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 64.3 bits (157), Expect = 1e-11
 Identities = 37/216 (17%), Positives = 68/216 (31%), Gaps = 37/216 (17%)

Query: 1   MLPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQ---------FDN---------- 41
           + PS   L L    L   P    +N   ++ + +S +          F N          
Sbjct: 29  LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIR 88

Query: 42  -----SFVPAWVF-GLSRLHFLNLGYNNFQG-PIPEGLQNLTSLKHLGLPFNHFSSSVPK 94
                +++       L  L FL +     +  P    + +      L +  N + +S+P 
Sbjct: 89  NTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPV 148

Query: 95  W-FDRLT-HLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEI-LEIFSGCV 151
             F  L      L L  N     +         L  +YL     N+ ++ I  + F G  
Sbjct: 149 NAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNK---NKYLTVIDKDAFGGVY 204

Query: 152 SNGLESLALASSSISGHLTDQLGQFKNLDSLDLSNN 187
           S     L ++ +S++          ++L  L   N 
Sbjct: 205 SG-PSLLDVSQTSVT---ALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 30/184 (16%), Positives = 61/184 (33%), Gaps = 21/184 (11%)

Query: 326 SLPLISSNLTVLELSGNSLSG-PIFHFLCYTINETMKLKFLFLDRNILQGKLP-DCWMSY 383
            +P +  +   L+L    L   P   F          +  +++  ++   +L    + + 
Sbjct: 25  RIPSLPPSTQTLKLIETHLRTIPSHAFSNLP-----NISRIYVSIDVTLQQLESHSFYNL 79

Query: 384 QNLMALDLSNNKFTGNLPTS-LGSLSSLVSLHLRKNRLSGTIP--ILLKNCTSLVTLDVG 440
             +  +++ N +    +    L  L  L  L +    L    P    + +      L++ 
Sbjct: 80  SKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEIT 138

Query: 441 ENEVFGNIPSW-FGERFSRMVLLILRSNNFDGPLPTELCDLAF----LQILDLADNNLSG 495
           +N    +IP   F    +  + L L +N F     T +   AF    L  + L  N    
Sbjct: 139 DNPYMTSIPVNAFQGLCNETLTLKLYNNGF-----TSVQGYAFNGTKLDAVYLNKNKYLT 193

Query: 496 TIPN 499
            I  
Sbjct: 194 VIDK 197

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 63.1 bits (154), Expect = 1e-11
 Identities = 34/124 (27%), Positives = 47/124 (37%), Gaps = 6/124 (4%)

Query: 12  NCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEG 71
            C       LP      +T L L  NQF  + VP  +     L  ++L  N     +   
Sbjct: 16  RCSNKGLKVLPKGIPRDVTELYLDGNQF--TLVPKELSNYKHLTLIDLSNNRIST-LSNQ 72

Query: 72  L-QNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPR-SMARLCNLRRL 129
              N+T L  L L +N      P+ FD L  L  LSL  N +   +P  +   L  L  L
Sbjct: 73  SFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHL 131

Query: 130 YLGG 133
            +G 
Sbjct: 132 AIGA 135

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 61.5 bits (150), Expect = 4e-11
 Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 8/107 (7%)

Query: 7   ELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLGYNNFQ 65
           EL L   Q    P+  ++N+  LT +DLS+N+   S +    F  +++L  L L YN  +
Sbjct: 35  ELYLDGNQFTLVPKE-LSNYKHLTLIDLSNNRI--STLSNQSFSNMTQLLTLILSYNRLR 91

Query: 66  GPIPEGL-QNLTSLKHLGLPFNHFSSSVPK-WFDRLTHLEHLSLSYN 110
             IP      L SL+ L L  N  S  VP+  F+ L+ L HL++  N
Sbjct: 92  C-IPPRTFDGLKSLRLLSLHGNDISV-VPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 52.3 bits (126), Expect = 7e-08
 Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 1/80 (1%)

Query: 57  LNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRI 116
           L L  N F   +P+ L N   L  + L  N  S+   + F  +T L  L LSYN L    
Sbjct: 36  LYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94

Query: 117 PRSMARLCNLRRLYLGGAKL 136
           PR+   L +LR L L G  +
Sbjct: 95  PRTFDGLKSLRLLSLHGNDI 114

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 60.8 bits (148), Expect = 7e-11
 Identities = 27/110 (24%), Positives = 39/110 (35%), Gaps = 6/110 (5%)

Query: 27  STLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLGYNNFQGPIPEGL-QNLTSLKHLGLP 84
              T L L+ N+         +F  L  L  L L  N   G I     +  + ++ L L 
Sbjct: 29  LHTTELLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTG-IEPNAFEGASHIQELQLG 86

Query: 85  FNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPR-SMARLCNLRRLYLGG 133
            N       K F  L  L+ L+L  N +   +   S   L +L  L L  
Sbjct: 87  ENKIKEISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLAS 135

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 5/89 (5%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLG 60
           LP LV+L+L   QL           S +  L L  N+     +   +F GL +L  LNL 
Sbjct: 53  LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI--KEISNKMFLGLHQLKTLNLY 110

Query: 61  YNNFQGPIPEG-LQNLTSLKHLGLPFNHF 88
            N     +  G  ++L SL  L L  N F
Sbjct: 111 DNQISC-VMPGSFEHLNSLTSLNLASNPF 138

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 60.5 bits (146), Expect = 9e-10
 Identities = 38/203 (18%), Positives = 67/203 (33%), Gaps = 40/203 (19%)

Query: 7   ELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSF-------VPAWVFGLSRLHFLNL 59
            L +       + +  +  FSTL  +D     + +                 + +  L+L
Sbjct: 389 ILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHL 448

Query: 60  GYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRS 119
            + +    +   L+ L  + HL L  N   + +P     L  LE L  S N+LE  +   
Sbjct: 449 AHKDLT--VLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALE-NVD-G 503

Query: 120 MARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNL 179
           +A L  L+ L L     N+ + +   I                          L     L
Sbjct: 504 VANLPRLQELLLCN---NR-LQQSAAI------------------------QPLVSCPRL 535

Query: 180 DSLDLSNNSIVGPRVLQLYLNKL 202
             L+L  NS+     +Q  L ++
Sbjct: 536 VLLNLQGNSLCQEEGIQERLAEM 558

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 51.7 bits (123), Expect = 5e-07
 Identities = 45/295 (15%), Positives = 83/295 (28%), Gaps = 42/295 (14%)

Query: 360 MKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNR 419
             L    L+  + Q      W    +     L  ++          +   L    L   +
Sbjct: 302 CDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPE-CWCRDSATDEQLFRCELSVEK 360

Query: 420 LSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCD 479
            +  +   L++C  L  L+                                  L T +  
Sbjct: 361 ST-VLQSELESCKELQELEP----------------------------ENKWCLLTIILL 391

Query: 480 LAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELV 539
           +  L  L      L          L A+  +     + +   F L +++      +  ++
Sbjct: 392 MRALDPLLYEKETLQY-----FSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVL 446

Query: 540 VTKG---VAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPET 596
                      + E L LV  +D S N     LP  L  L+ ++ L  S N     +   
Sbjct: 447 HLAHKDLTVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG- 503

Query: 597 IGTMRSLESIDFSVNKFTG-EIPQSMSSLTFLNHLNLSNNYLTGKIPSSTQLQSF 650
           +  +  L+ +    N+       Q + S   L  LNL  N L  +     +L   
Sbjct: 504 VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 558

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 50.5 bits (120), Expect = 1e-06
 Identities = 50/351 (14%), Positives = 88/351 (25%), Gaps = 51/351 (14%)

Query: 164 SISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVG 223
           S   +    LG+ +  D L   + S     +   +   L           +   +   V 
Sbjct: 227 SAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVE 286

Query: 224 ANKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRL 283
                 + +   +    L    L        F +        +   L          +  
Sbjct: 287 WRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRD-- 344

Query: 284 LKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNS 343
             +  QL+  +L   +     + L    +L  L         ++ L+   L  L     +
Sbjct: 345 SATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKET 404

Query: 344 LS--------------------GPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSY 383
           L                                 E   ++ L L    L   L       
Sbjct: 405 LQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCHL-EQL 462

Query: 384 QNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENE 443
             +  LDLS+N+    LP +L +L  L  L    N L   +   + N   L  L +  N 
Sbjct: 463 LLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNN- 518

Query: 444 VFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLS 494
               +                            L     L +L+L  N+L 
Sbjct: 519 ---RLQQS--------------------AAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 50.5 bits (120), Expect = 1e-06
 Identities = 45/267 (16%), Positives = 81/267 (30%), Gaps = 13/267 (4%)

Query: 87  HFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEI 146
            FS  +       T L  +  +  S+E R P    R  ++    L  A LN ++ +    
Sbjct: 260 CFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFR 319

Query: 147 FSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTL 206
                S+  +   L                + L   +LS       +       +L    
Sbjct: 320 VIWTGSDSQKECVLLKDRPEC-WCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELE 378

Query: 207 SEIHFANLT------KLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLY 260
            E  +  LT       L   L     L        + P +   L            +   
Sbjct: 379 PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKM 438

Query: 261 SQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIA 320
              D++ L L +  ++    +  L+    +  LDL HN++      L     L  L   +
Sbjct: 439 EYADVRVLHLAHKDLT-VLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQA-S 494

Query: 321 NNFSGSLPLISS--NLTVLELSGNSLS 345
           +N   ++  +++   L  L L  N L 
Sbjct: 495 DNALENVDGVANLPRLQELLLCNNRLQ 521

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 46.3 bits (109), Expect = 3e-05
 Identities = 29/232 (12%), Positives = 64/232 (27%), Gaps = 63/232 (27%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
              L   +LS  +        + +   L  L+  +     + +         L    L  
Sbjct: 348 DEQLFRCELSVEKSTVLQSE-LESCKELQELEPENKWCLLTII---------LLMRALDP 397

Query: 62  NNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLT-----HLEHLSLSYNSLEGRI 116
             ++    +    L ++  +   +     S     + +       +  L L++  L   +
Sbjct: 398 LLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VL 456

Query: 117 PRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQF 176
              + +L  +  L L                     N L +L              L   
Sbjct: 457 C-HLEQLLLVTHLDLSH-------------------NRLRAL-----------PPALAAL 485

Query: 177 KNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLT 228
           + L+ L  S+N++                +  +   NL +L   L+  N+L 
Sbjct: 486 RCLEVLQASDNALE--------------NVDGVA--NLPRLQELLLCNNRLQ 521

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 41.7 bits (97), Expect = 8e-04
 Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 8/84 (9%)

Query: 1   MLPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLG 60
            L  L  L  S+  L +   +   N   L  L L +N+   S     +    RL  LNL 
Sbjct: 484 ALRCLEVLQASDNALENVDGVA--NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ 541

Query: 61  YN------NFQGPIPEGLQNLTSL 78
            N        Q  + E L +++S+
Sbjct: 542 GNSLCQEEGIQERLAEMLPSVSSI 565

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 60.7 bits (147), Expect = 1e-09
 Identities = 71/467 (15%), Positives = 143/467 (30%), Gaps = 55/467 (11%)

Query: 2   LPSLVELDLSNCQL--HHFPQLPVANFSTLTTLDLSH-NQFDNSFVPAWVFGLSRLHFLN 58
              L E+ L    +       +   +F     L LS    F    + A       L  L+
Sbjct: 104 YTWLEEIRLKRMVVTDDCLELI-AKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELD 162

Query: 59  LGYNNFQGPIPEGL----QNLTSLKHLGLPFNHFS---SSVPKWFDRLTHLEHLSLSYNS 111
           L  ++        L       TSL  L +         S++ +   R  +L+ L L+   
Sbjct: 163 LRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAV 222

Query: 112 LEGRIPRSMARLCNLRRLYLGGAKLNQE---ISEILEIFSGCVSNGLESLALASSSISGH 168
              ++   + R   L  L  GG          S +    SGC    L  L+    ++  +
Sbjct: 223 PLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKE--LRCLSGFWDAVPAY 280

Query: 169 LTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLT 228
           L         L +L+LS  ++    +++L L +            +    + ++ +    
Sbjct: 281 LPAVYSVCSRLTTLNLSYATVQSYDLVKL-LCQCPKLQRLWVLDYIEDAGLEVLASTCKD 339

Query: 229 LKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQ----------KDLQFLDLFNSGISGT 278
           L+            EL +   +     P    ++            L+ +  F   ++  
Sbjct: 340 LR------------ELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNA 387

Query: 279 FPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLE 338
               + ++   +    L   +       LT          I  +          +L  L 
Sbjct: 388 ALITIARNRPNMTRFRLCIIE-PKAPDYLTLEPLDIGFGAIVEHC--------KDLRRLS 438

Query: 339 LSGNSLSGPIFHFLCYTINETMKLKFLFLDR-NILQGKLPDCWMSYQNLMALDLSNNKFT 397
           LSG  L+  +F ++        K++ L +         +        +L  L++ +  F 
Sbjct: 439 LSGL-LTDKVFEYIG---TYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFG 494

Query: 398 GN-LPTSLGSLSSLVSLHLRKNRLS-GTIPILLKNCTSLVTLDVGEN 442
              L  +   L ++ SL +    +S G   +L +    L    + E 
Sbjct: 495 DKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER 541

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 51.4 bits (123), Expect = 8e-07
 Identities = 74/478 (15%), Positives = 133/478 (27%), Gaps = 71/478 (14%)

Query: 3   PSLVELDLSNCQ---------------LHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAW 47
           P +  ++L                   ++ + +   ++++ L  + L      +  +   
Sbjct: 66  PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELI 125

Query: 48  VFGLSRLHFLNLGYNNFQGP--IPEGLQNLTSLKHLGLPFNHFSSSVPKWF----DRLTH 101
                    L L          +        +LK L L  +        W     D  T 
Sbjct: 126 AKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTS 185

Query: 102 LEHLSLS--YNSLEGRIPRSMARLC-NLRRLYLGGAKLNQEISEILEIFSGCVSNGLESL 158
           L  L++S   + +       +   C NL+ L L        + ++  +        LE L
Sbjct: 186 LVSLNISCLASEVSFSALERLVTRCPNLKSLKLNR---AVPLEKLATLLQRAPQ--LEEL 240

Query: 159 ALASSSISGHLTDQLGQFKNLDSL----DLSNNSIVGPRVLQLYLNKLHGTLSEIHFANL 214
                +         G    L        LS      P  L    +     L+ ++ +  
Sbjct: 241 GTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSR-LTTLNLSYA 299

Query: 215 TKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQ--KDLQFLDLFN 272
           T  S  LV       K++R            L   D      L + +   KDL+ L +F 
Sbjct: 300 TVQSYDLVKLLCQCPKLQR------------LWVLDYIEDAGLEVLASTCKDLRELRVFP 347

Query: 273 SGISGTFPNRLLKSASQLYLLDLGHN--QIHGELTNLTKASQLSYLSLIANNFSGSLPLI 330
           S      PN  L     + +         +      +T A+    L  IA N        
Sbjct: 348 SEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAA----LITIARNR------- 396

Query: 331 SSNLTVLELSGNSLSGPIFHFLCYTINETMKL--KFLFLDRNILQGKLPDCWMSY----- 383
             N+T   L       P +  L         +      L R  L G L D    Y     
Sbjct: 397 -PNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYA 455

Query: 384 QNLMALDLSNNKFTGN-LPTSLGSLSSLVSLHLRKNRLSG-TIPILLKNCTSLVTLDV 439
           + +  L ++    +   +   L    SL  L +R        +        ++ +L +
Sbjct: 456 KKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWM 513

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 59.0 bits (143), Expect = 2e-09
 Identities = 42/221 (19%), Positives = 68/221 (30%), Gaps = 61/221 (27%)

Query: 3   PSLVELDLSNCQL-------------HHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVF 49
             L  L L N  L                      N   L ++    N+ +N  +  W  
Sbjct: 122 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181

Query: 50  GLSR---LHFLNLGYNNF-----QGPIPEGLQNLTSLKHLGLPFNHF--------SSSVP 93
                  LH + +  N       +  + EGL     LK L L  N F        + ++ 
Sbjct: 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK 241

Query: 94  KWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSN 153
            W     +L  L L+   L  R                 GA        +++ FS   + 
Sbjct: 242 SW----PNLRELGLNDCLLSAR-----------------GAA------AVVDAFSKLENI 274

Query: 154 GLESLALASSSISG----HLTDQLGQ-FKNLDSLDLSNNSI 189
           GL++L L  + I       L   + +   +L  L+L+ N  
Sbjct: 275 GLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 56.3 bits (136), Expect = 1e-08
 Identities = 52/362 (14%), Positives = 100/362 (27%), Gaps = 85/362 (23%)

Query: 23  VANFSTLTTLDLSHNQFDNSFVPAWVFGLSR---LHFLNLGYNNFQGP-----IPEGLQN 74
           +A FS +    L  +        +    L     +  + L  N   G      + E + +
Sbjct: 1   MARFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTI-GTEAARWLSENIAS 58

Query: 75  LTSLKHLGLPFNHFSSSVPKWFD----------RLTHLEHLSLSYNSLEGRIPRSMARL- 123
              L+              +  +          +   L  + LS N+        +    
Sbjct: 59  KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFL 118

Query: 124 ---CNLRRLYL--------GGAKLNQEISEILEIFSGCVSNGLESLALASSSISG----H 168
                L  LYL         GAK+ + + E+        +  L S+    + +       
Sbjct: 119 SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE 178

Query: 169 LTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLT 228
                   + L ++ +  N I  P  ++  L +          A   +L V  +  N  T
Sbjct: 179 WAKTFQSHRLLHTVKMVQNGI-RPEGIEHLLLEG--------LAYCQELKVLDLQDNTFT 229

Query: 229 LKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLK--- 285
                        + + L+S               +L+ L L +  +S      ++    
Sbjct: 230 HLG-------SSALAIALKSW-------------PNLRELGLNDCLLSARGAAAVVDAFS 269

Query: 286 --SASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNS 343
                 L  L L +N+I  +                       +     +L  LEL+GN 
Sbjct: 270 KLENIGLQTLRLQYNEIELD---------------AVRTLKTVIDEKMPDLLFLELNGNR 314

Query: 344 LS 345
            S
Sbjct: 315 FS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 54.7 bits (132), Expect = 5e-08
 Identities = 57/345 (16%), Positives = 94/345 (27%), Gaps = 82/345 (23%)

Query: 4   SLVELDLSNCQL------HHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGL------ 51
           S+    L    +        F  L      ++  + LS N             +      
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVL--LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDL 62

Query: 52  SRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNS 111
               F ++     +  IPE L+ L       L                  L  + LS N+
Sbjct: 63  EIAEFSDIFTGRVKDEIPEALRLLLQ----ALLKC-------------PKLHTVRLSDNA 105

Query: 112 LEGRIPRSMARL----CNLRRLYL--------GGAKLNQEISEILEIFSGCVSNGLESLA 159
                   +         L  LYL         GAK+ + + E+        +  L S+ 
Sbjct: 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSII 165

Query: 160 LASSSISG----HLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLT 215
              + +               + L ++ +  N I  P  ++  L +          A   
Sbjct: 166 CGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGI-RPEGIEHLLLEG--------LAYCQ 216

Query: 216 KLSVFLVGANKLT----------LKVKRDWIPPFQLIELGLRSCDVGSR------FPLWL 259
           +L V  +  N  T          LK          L ELGL  C + +R           
Sbjct: 217 ELKVLDLQDNTFTHLGSSALAIALKSWP------NLRELGLNDCLLSARGAAAVVDAFSK 270

Query: 260 YSQKDLQFLDLFNSGISG----TFPNRLLKSASQLYLLDLGHNQI 300
                LQ L L  + I      T    + +    L  L+L  N+ 
Sbjct: 271 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 52.4 bits (126), Expect = 3e-07
 Identities = 43/228 (18%), Positives = 74/228 (32%), Gaps = 44/228 (19%)

Query: 3   PSLVELDLSNCQL-----HHFPQLPVANFSTLTTLDLSHNQF--DNSFVPAWVFGLSR-- 53
            S+ E+ LS   +         +  +A+   L   + S          +P  +  L +  
Sbjct: 32  DSVKEIVLSGNTIGTEAARWLSEN-IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQAL 90

Query: 54  -----LHFLNLGYNNFQG----PIPEGLQNLTSLKHLGLPFNHFS-------------SS 91
                LH + L  N F      P+ + L   T L+HL L  N                 +
Sbjct: 91  LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELA 150

Query: 92  VPKWFDRLTHLEHLSLSYNSLEGR----IPRSMARLCNLRRLYLGGAKLNQE-ISEIL-E 145
           V K       L  +    N LE        ++      L  + +    +  E I  +L E
Sbjct: 151 VNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLE 210

Query: 146 IFSGCVSNGLESLALASSSISG----HLTDQLGQFKNLDSLDLSNNSI 189
             + C    L+ L L  ++ +      L   L  + NL  L L++  +
Sbjct: 211 GLAYCQE--LKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL 256

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 39/252 (15%), Positives = 72/252 (28%), Gaps = 49/252 (19%)

Query: 241 LIELGLRSCDVGSR----FPLWLYSQKDLQFLDLFNSGISGTFPNRL---LKSASQLYLL 293
           +    L+   + +         L     ++ + L  + I       L   + S   L + 
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 294 DLGHNQIHGELTN------------LTKASQLSYLSLIANNFS-------GSLPLISSNL 334
           +       G + +            L K  +L  + L  N F               + L
Sbjct: 66  EFSDIFT-GRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 124

Query: 335 TVLELSGNSLS----GPIFHFLCYTINETMK-----LKFLFLDRNILQGK----LPDCWM 381
             L L  N L       I   L              L+ +   RN L+          + 
Sbjct: 125 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 184

Query: 382 SYQNLMALDLSNNKFT-----GNLPTSLGSLSSLVSLHLRKNRLS--GTIPI--LLKNCT 432
           S++ L  + +  N          L   L     L  L L+ N  +  G+  +   LK+  
Sbjct: 185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 244

Query: 433 SLVTLDVGENEV 444
           +L  L + +  +
Sbjct: 245 NLRELGLNDCLL 256

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 52/332 (15%), Positives = 102/332 (30%), Gaps = 66/332 (19%)

Query: 155 LESLALASSSISG----HLTDQLGQFKNLDSLDLSNNSI--VGPRVLQLYLNKLHGTLSE 208
           +E  +L   +I+      +   L +  ++  + LS N+I     R L   +      L  
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENI-ASKKDLEI 64

Query: 209 IHFANLT---KLSVFLVGANKLT--LKVKRDWIPPFQLIELGLRSCDVGSR----FPLWL 259
             F+++               L   L          +L  + L     G         +L
Sbjct: 65  AEFSDIFTGRVKDEIPEALRLLLQALLKCP------KLHTVRLSDNAFGPTAQEPLIDFL 118

Query: 260 YSQKDLQFLDLFNSGIS------------GTFPNRLLKSASQLYLLDLGHNQIHGELTNL 307
                L+ L L N+G+                 N+  K+A  L  +  G N++       
Sbjct: 119 SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG---- 174

Query: 308 TKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGP-IFHFLCYTINETMKLKFLF 366
               + +      ++           L  +++  N +    I H L   +    +LK L 
Sbjct: 175 -SMKEWA--KTFQSH---------RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLD 222

Query: 367 LDRNILQGK----LPDCWMSYQNLMALDLSNNKFTGN----LPTSL--GSLSSLVSLHLR 416
           L  N         L     S+ NL  L L++   +      +  +        L +L L+
Sbjct: 223 LQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQ 282

Query: 417 KNRLS--GTIPI---LLKNCTSLVTLDVGENE 443
            N +       +   + +    L+ L++  N 
Sbjct: 283 YNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 44.7 bits (106), Expect = 7e-05
 Identities = 38/287 (13%), Positives = 82/287 (28%), Gaps = 55/287 (19%)

Query: 381 MSYQNLMALDLSNNKFTG----NLPTSLGSLSSLVSLHLRKNRLS--GTIPI--LLKNCT 432
           M+  ++    L  +  T     ++   L    S+  + L  N +       +   + +  
Sbjct: 1   MARFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKK 60

Query: 433 SLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNN 492
            L   +  +          F  R    +   LR       L   L     L  + L+DN 
Sbjct: 61  DLEIAEFSDI---------FTGRVKDEIPEALRL------LLQALLKCPKLHTVRLSDNA 105

Query: 493 LSGTIPNCIHNLTAMATVNP------FTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAA 546
                P     L    + +          N           +GP    +    + +    
Sbjct: 106 FG---PTAQEPLIDFLSKHTPLEHLYLHNN----------GLGPQAGAKIARALQELAVN 152

Query: 547 DYNEILNLVRIIDFSKNLFSG----TLPMGLTNLKAVQSLNLSYNIFTGR-----IPETI 597
              +    +R I   +N               + + + ++ +  N          + E +
Sbjct: 153 KKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGL 212

Query: 598 GTMRSLESIDFSVNKFTGE----IPQSMSSLTFLNHLNLSNNYLTGK 640
              + L+ +D   N FT      +  ++ S   L  L L++  L+ +
Sbjct: 213 AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR 259

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 55.7 bits (135), Expect = 3e-09
 Identities = 38/105 (36%), Positives = 49/105 (46%), Gaps = 5/105 (4%)

Query: 8   LDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLGYNNFQG 66
           L+L + +L   P       + LT L LS NQ     +P  VF  L++L  L L  N  Q 
Sbjct: 33  LELESNKLQSLPHGVFDKLTQLTKLSLSQNQI--QSLPDGVFDKLTKLTILYLHENKLQS 90

Query: 67  PIPEGL-QNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYN 110
            +P G+   LT LK L L  N   S     FDRLT L+ + L  N
Sbjct: 91  -LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 26/81 (32%), Positives = 33/81 (40%), Gaps = 2/81 (2%)

Query: 57  LNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRI 116
           L L  N  Q         LT L  L L  N   S     FD+LT L  L L  N L+  +
Sbjct: 33  LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ-SL 91

Query: 117 PRSM-ARLCNLRRLYLGGAKL 136
           P  +  +L  L+ L L   +L
Sbjct: 92  PNGVFDKLTQLKELALDTNQL 112

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 58.2 bits (140), Expect = 4e-09
 Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 2/95 (2%)

Query: 44  VPAWVFGLSRLHFLNLGYNNFQGPIPEG-LQNLTSLKHLGLPFNHFSSSVPKWFDRLTHL 102
               + G   L  L +        +    L+ L  L++L +  +      P  F     L
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82

Query: 103 EHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLN 137
             L+LS+N+LE  +     +  +L+ L L G  L+
Sbjct: 83  SRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 54.0 bits (129), Expect = 7e-08
 Identities = 23/89 (25%), Positives = 32/89 (35%), Gaps = 5/89 (5%)

Query: 2   LPSLVELDLSNCQ-LHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNL 59
             +L EL + N Q L H     +     L  L +  +     FV    F    RL  LNL
Sbjct: 30  AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL--RFVAPDAFHFTPRLSRLNL 87

Query: 60  GYNNFQGPIPEGLQNLTSLKHLGLPFNHF 88
            +N  +  +        SL+ L L  N  
Sbjct: 88  SFNALES-LSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.2 bits (101), Expect = 2e-04
 Identities = 13/64 (20%), Positives = 17/64 (26%), Gaps = 2/64 (3%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
           L  L  L +    L             L+ L+LS N      +         L  L L  
Sbjct: 55  LGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL--ESLSWKTVQGLSLQELVLSG 112

Query: 62  NNFQ 65
           N   
Sbjct: 113 NPLH 116

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 57.8 bits (140), Expect = 4e-09
 Identities = 46/215 (21%), Positives = 80/215 (37%), Gaps = 30/215 (13%)

Query: 4   SLVELDLSNCQL-----HHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGL----SRL 54
           S+  L+LS   L         Q+  A  + +T+L+LS N          V  L      +
Sbjct: 52  SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTI 111

Query: 55  HFLNLGYNNFQG----PIPEGLQNL-TSLKHLGLPFNHFSSSVPKWF-----DRLTHLEH 104
             L+LG+N+F         +   NL  S+  L L  N                   ++  
Sbjct: 112 TVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNS 171

Query: 105 LSLSYNSLEGRIPRSMARL-----CNLRRLYLGGAKLNQE-ISEILEIFSGCVSNGLESL 158
           L+L  N+L  +    +A+       ++  L L    L  +  +E+  IFS    N + SL
Sbjct: 172 LNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSI-PNHVVSL 230

Query: 159 ALASSSISG----HLTDQLGQFKNLDSLDLSNNSI 189
            L  + + G    +L       K+L ++ L  + +
Sbjct: 231 NLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIV 265

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 53.6 bits (129), Expect = 9e-08
 Identities = 57/382 (14%), Positives = 109/382 (28%), Gaps = 89/382 (23%)

Query: 3   PSLVELDLSNCQL-----HHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGL----SR 53
             +  LDLS   L         Q      +++T+L+LS N          V  L    + 
Sbjct: 22  HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81

Query: 54  LHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLE 113
           +  LNL  N       +    L       L                  +  L L +N   
Sbjct: 82  VTSLNLSGNFLS---YKSSDELVK----TLAAIP------------FTITVLDLGWNDFS 122

Query: 114 GRIPRSMARL-----CNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGH 168
            +      +       ++  L L G  L  +                + L    ++I  +
Sbjct: 123 SKSSSEFKQAFSNLPASITSLNLRGNDLGIK--------------SSDELIQILAAIPAN 168

Query: 169 LTDQLGQFKNLDSLDLSNNSI--VGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANK 226
           +           SL+L  N++       L  +L  +  +++ +   +L+   + L    +
Sbjct: 169 VN----------SLNLRGNNLASKNCAELAKFLASIPASVTSL---DLSANLLGLKSYAE 215

Query: 227 LTLKVKRDWIPPFQLIELGLRSCDVGS----RFPLWLYSQKDLQFLDLFNSGISGTFPNR 282
           L          P  ++ L L    +         L   S K LQ + L    +      +
Sbjct: 216 LAYIFSS---IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQ 272

Query: 283 L------LKSASQLYLLDLGHNQIHGE----LTNLTKASQ--LSYLSLI--------ANN 322
                    +  ++ L+D    +IH      ++NL +         SL+         + 
Sbjct: 273 CKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQ 332

Query: 323 FSGSLPLISSNLTVLELSGNSL 344
            +     I   L     +   L
Sbjct: 333 TNIEDLNIPDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 58/413 (14%), Positives = 124/413 (30%), Gaps = 100/413 (24%)

Query: 27  STLTTLDLSHNQFDNSFVPAWVFGL----SRLHFLNLGYNNFQGPIPEGLQNLTSLKHLG 82
             +T+LDLS N   +      +       + +  LNL  N+      +    L       
Sbjct: 22  HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLG---FKNSDELVQ----I 74

Query: 83  LPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARL-----CNLRRLYLGGAKLN 137
           L                 ++  L+LS N L  +    + +        +  L LG    +
Sbjct: 75  LAAIP------------ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFS 122

Query: 138 QE-ISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQF-----KNLDSLDLSNNSI-- 189
            +  SE  + FS   ++ + SL L  + +    +D+L Q       N++SL+L  N++  
Sbjct: 123 SKSSSEFKQAFSNLPAS-ITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS 181

Query: 190 VGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSC 249
                L  +L  +  +++ +   +L+   + L    +L          P  ++ L L   
Sbjct: 182 KNCAELAKFLASIPASVTSL---DLSANLLGLKSYAELAYIFSS---IPNHVVSLNLCLN 235

Query: 250 DVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTK 309
            +         S ++L+                L  S   L  + L ++ +     N++K
Sbjct: 236 CLHGP------SLENLK---------------LLKDSLKHLQTVYLDYDIV----KNMSK 270

Query: 310 ASQLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDR 369
               +  +   N            + +++ +G  +       +   I             
Sbjct: 271 EQCKALGAAFPNI---------QKIILVDKNGKEIHPSHSIPISNLI------------- 308

Query: 370 NILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSG 422
                +               L N                 +   LR++  + 
Sbjct: 309 -----RELSG-----KADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTC 351

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 44.7 bits (106), Expect = 7e-05
 Identities = 43/266 (16%), Positives = 84/266 (31%), Gaps = 57/266 (21%)

Query: 265 LQFLDLFNSGISGT----FPNRLLKSASQLYLLDLGHNQIHGE-LTNLTKA-----SQLS 314
           +  L+L  + +           L    + +  L+L  N +  +    L K        ++
Sbjct: 53  VTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTIT 112

Query: 315 YLSLIANNF--------SGSLPLISSNLTVLELSGNSLSGPIFHFLCYTI-NETMKLKFL 365
            L L  N+F          +   + +++T L L GN L       L   +      +  L
Sbjct: 113 VLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSL 172

Query: 366 FLDRNILQGK--------LPDCWMSYQNLMALDLSNNKFTGNLPTSLGSL-----SSLVS 412
            L  N L  K        L        ++ +LDLS N         L  +     + +VS
Sbjct: 173 NLRGNNLASKNCAELAKFLASI---PASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVS 229

Query: 413 LHLRKNRLSGT----IPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNN 468
           L+L  N L G     + +L  +   L T+ +  +    N+     +   + +     +  
Sbjct: 230 LNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI-VKNM----SKEQCKALGAAFPNIQ 284

Query: 469 FDGPLPTELCDLAFLQILDLADNNLS 494
                         + ++D     + 
Sbjct: 285 K-------------IILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 44.3 bits (105), Expect = 8e-05
 Identities = 55/389 (14%), Positives = 118/389 (30%), Gaps = 84/389 (21%)

Query: 68  IPEGLQNLTSLKHLGLPFNHFSSSVPKWF-----DRLTHLEHLSLSYNSLEGRIPRSMAR 122
           + E       +  L L  N+  S           +    +  L+LS NSL  +    + +
Sbjct: 14  VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQ 73

Query: 123 L-----CNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFK 177
           +      N+  L L G  L+ +                + L    ++I   +T       
Sbjct: 74  ILAAIPANVTSLNLSGNFLSYK--------------SSDELVKTLAAIPFTIT------- 112

Query: 178 NLDSLDLSNNSI--VGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDW 235
               LDL  N          +   + L  +++ ++      L +    +++L   +    
Sbjct: 113 ---VLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRG-NDLGI--KSSDELIQILAA-- 164

Query: 236 IPPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDL 295
             P  +  L LR  ++ S+    L                       L    + +  LDL
Sbjct: 165 -IPANVNSLNLRGNNLASKNCAELAKF--------------------LASIPASVTSLDL 203

Query: 296 GHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYT 355
             N +  +                    +     I +++  L L  N L GP    L   
Sbjct: 204 SANLLGLKS---------------YAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLL 248

Query: 356 INETMKLKFLFLDRNILQGKLPDC-------WMSYQNLMALDLSNNKFTGNLPTSLGSLS 408
            +    L+ ++LD +I++    +        + + Q ++ +D +  +   +    + +L 
Sbjct: 249 KDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLI 308

Query: 409 SLVSLHLRKNRLSGTIPILLKNCTSLVTL 437
             +S       L     I  +   + +  
Sbjct: 309 RELSGKADVPSLLNQCLIFAQKHQTNIED 337

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 57.0 bits (138), Expect = 5e-09
 Identities = 43/168 (25%), Positives = 65/168 (38%), Gaps = 19/168 (11%)

Query: 22  PVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHL 81
           P    +     +L         V      LS +   N   +N Q     G+Q  T+LK L
Sbjct: 14  PDPGLANAVKQNLGKQSV-TDLVS--QKELSGVQNFNGDNSNIQ--SLAGMQFFTNLKEL 68

Query: 82  GLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEIS 141
            L  N  S   P     LT LE LS++ N L+  +  +      L RL+L     N E+ 
Sbjct: 69  HLSHNQISDLSP--LKDLTKLEELSVNRNRLK-NL--NGIPSACLSRLFLD----NNELR 119

Query: 142 EILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLDLSNNSI 189
           +  +      +  LE L++ ++ +       LG    L+ LDL  N I
Sbjct: 120 DT-DSLIHLKN--LEILSIRNNKLKS--IVMLGFLSKLEVLDLHGNEI 162

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 37/175 (21%), Positives = 61/175 (34%), Gaps = 14/175 (8%)

Query: 263 KDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANN 322
             +Q  +  NS I        ++  + L  L L HNQI  +L+ L   ++L  LS+  N 
Sbjct: 41  SGVQNFNGDNSNIQSLAG---MQFFTNLKELHLSHNQIS-DLSPLKDLTKLEELSVNRNR 96

Query: 323 FSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMS 382
                 + S+ L+ L L  N L          ++     L+ L +  N L+  +      
Sbjct: 97  LKNLNGIPSACLSRLFLDNNELRDTD------SLIHLKNLEILSIRNNKLK-SIVML-GF 148

Query: 383 YQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTL 437
              L  LDL  N+ T      L  L  +  + L   +                T+
Sbjct: 149 LSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTV 201

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 38/189 (20%), Positives = 64/189 (33%), Gaps = 43/189 (22%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
           L  +   +  N  +       +  F+ L  L LSHNQ  +      +  L++L  L++  
Sbjct: 40  LSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP---LKDLTKLEELSVNR 94

Query: 62  NNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMA 121
           N  +     G+ +   L  L L  N    +       L +LE LS+  N L+  I   + 
Sbjct: 95  NRLK--NLNGIPSAC-LSRLFLDNNELRDTDS--LIHLKNLEILSIRNNKLK-SIV-MLG 147

Query: 122 RLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDS 181
            L  L  L L G                   N + +               L + K ++ 
Sbjct: 148 FLSKLEVLDLHG-------------------NEITNT------------GGLTRLKKVNW 176

Query: 182 LDLSNNSIV 190
           +DL+    V
Sbjct: 177 IDLTGQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 51.2 bits (123), Expect = 4e-07
 Identities = 59/288 (20%), Positives = 98/288 (34%), Gaps = 49/288 (17%)

Query: 284 LKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLISS--NLTVLELSG 341
               +     +LG   +  +L +  + S +   +   +N   SL  +    NL  L LS 
Sbjct: 15  DPGLANAVKQNLGKQSVT-DLVSQKELSGVQNFNGDNSNIQ-SLAGMQFFTNLKELHLSH 72

Query: 342 NSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLP 401
           N +S          + +  KL+ L ++RN L+       +    L  L L NN+      
Sbjct: 73  NQISDLSP------LKDLTKLEELSVNRNRLKNLNG---IPSACLSRLFLDNNELRD--T 121

Query: 402 TSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVL 461
            SL  L +L  L +R N+L   +   L   + L  LD+  N     I +           
Sbjct: 122 DSLIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGN----EITNT---------- 165

Query: 462 LILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYS 521
                          L  L  +  +DL               L    TV    G  I   
Sbjct: 166 -------------GGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPY 212

Query: 522 FPLNS-TIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGT 568
           +  N  +   G V  +  V T  V+  ++E +N    +  ++ +F GT
Sbjct: 213 YISNGGSYVDGCVLWELPVYTDEVSYKFSEYIN----VGETEAIFDGT 256

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 43/268 (16%), Positives = 83/268 (30%), Gaps = 82/268 (30%)

Query: 70  EGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRL 129
                L +     L     +  V      L+ +++ +   ++++  +   M    NL+ L
Sbjct: 13  FPDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKEL 68

Query: 130 YLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLDLSNNSI 189
           +L     NQ IS++                             L     L+ L ++ N +
Sbjct: 69  HLSH---NQ-ISDL---------------------------SPLKDLTKLEELSVNRNRL 97

Query: 190 VGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSC 249
                           L+ I  A L++L    +  N+L                      
Sbjct: 98  K--------------NLNGIPSACLSRLF---LDNNELR--------------------- 119

Query: 250 DVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTK 309
           D  S     L   K+L+ L + N+ +        L   S+L +LDL  N+I      LT+
Sbjct: 120 DTDS-----LIHLKNLEILSIRNNKLKSIVM---LGFLSKLEVLDLHGNEIT-NTGGLTR 170

Query: 310 ASQLSYLSLIANNFSGSLPLISSNLTVL 337
             +++++ L               L + 
Sbjct: 171 LKKVNWIDLTGQKCVNEPVKYQPELYIT 198

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 54.7 bits (132), Expect = 3e-08
 Identities = 47/217 (21%), Positives = 82/217 (37%), Gaps = 28/217 (12%)

Query: 22  PVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHL 81
               F+     +L      ++        L+ +  +    ++ +    +G+Q L ++  L
Sbjct: 19  SDDAFAETIKDNLKKKSVTDAVTQN---ELNSIDQIIANNSDIK--SVQGIQYLPNVTKL 73

Query: 82  GLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEIS 141
            L  N  +   P     L +L  L L  N ++  +  S+  L  L+ L L     N  IS
Sbjct: 74  FLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEH---NG-IS 125

Query: 142 EILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQ----- 196
           +I           LESL L ++ I+      L +   LD+L L +N I     L      
Sbjct: 126 DI-NGLVHLPQ--LESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVPLAGLTKL 180

Query: 197 --LYLNKLHGTLSEIH-FANLTKLSVFLVGANKLTLK 230
             LYL+     +S++   A L  L V  + + +   K
Sbjct: 181 QNLYLS--KNHISDLRALAGLKNLDVLELFSQECLNK 215

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 53/263 (20%), Positives = 87/263 (33%), Gaps = 54/263 (20%)

Query: 263 KDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANN 322
            +    +L    ++           + +  +   ++ I   +  +     ++ L L  N 
Sbjct: 24  AETIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIK-SVQGIQYLPNVTKLFLNGNK 79

Query: 323 FSGSLPLIS-SNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQ-----GKL 376
            +   PL +  NL  L L  N +          ++ +  KLK L L+ N +        L
Sbjct: 80  LTDIKPLANLKNLGWLFLDENKVKD------LSSLKDLKKLKSLSLEHNGISDINGLVHL 133

Query: 377 PDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVT 436
           P        L +L L NNK T    T L  L+ L +L L  N++S  +P  L   T L  
Sbjct: 134 P-------QLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQN 182

Query: 437 LDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGT 496
           L + +N    +I                            L  L  L +L+L        
Sbjct: 183 LYLSKN----HISDL-----------------------RALAGLKNLDVLELFSQECLNK 215

Query: 497 IPNCIHNLTAMATVNPFTGNAIE 519
             N   NL    TV    G+ + 
Sbjct: 216 PINHQSNLVVPNTVKNTDGSLVT 238

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 43/268 (16%), Positives = 78/268 (29%), Gaps = 59/268 (22%)

Query: 173 LGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVK 232
              F      +L   S+                   +    L  +   +   + +     
Sbjct: 20  DDAFAETIKDNLKKKSVT----------------DAVTQNELNSIDQIIANNSDIKS--- 60

Query: 233 RDWIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYL 292
              +   Q +                     ++  L L  + ++   P   L +   L  
Sbjct: 61  ---VQGIQYL--------------------PNVTKLFLNGNKLTDIKP---LANLKNLGW 94

Query: 293 LDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLIS--SNLTVLELSGNSLSGPIFH 350
           L L  N++  +L++L    +L  LSL  N  S  +  +     L  L L  N ++     
Sbjct: 95  LFLDENKVK-DLSSLKDLKKLKSLSLEHNGIS-DINGLVHLPQLESLYLGNNKITDITV- 151

Query: 351 FLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSL 410
                ++   KL  L L+ N +   +         L  L LS N  + +L  +L  L +L
Sbjct: 152 -----LSRLTKLDTLSLEDNQIS-DIVPL-AGLTKLQNLYLSKNHIS-DL-RALAGLKNL 202

Query: 411 VSLHLRKNRLSGTIPILLKNCTSLVTLD 438
             L L              N     T+ 
Sbjct: 203 DVLELFSQECLNKPINHQSNLVVPNTVK 230

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 47.4 bits (113), Expect = 8e-06
 Identities = 27/130 (20%), Positives = 46/130 (35%), Gaps = 9/130 (6%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
           L  L  L L +  +       + +   L +L L +N+  +      +  L++L  L+L  
Sbjct: 111 LKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITD---ITVLSRLTKLDTLSLED 165

Query: 62  NNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMA 121
           N         L  LT L++L L  NH S         L +L+ L L       +     +
Sbjct: 166 NQISDI--VPLAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQS 221

Query: 122 RLCNLRRLYL 131
            L     +  
Sbjct: 222 NLVVPNTVKN 231

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 44.7 bits (106), Expect = 5e-05
 Identities = 46/255 (18%), Positives = 78/255 (30%), Gaps = 63/255 (24%)

Query: 97  DRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLE 156
           D        +L   S+   + ++   L ++ ++    + +                    
Sbjct: 21  DAFAETIKDNLKKKSVTDAVTQNE--LNSIDQIIANNSDI-------------------- 58

Query: 157 SLALASSSISGHLTDQLGQFKNLDSLDLSNNSI--VGP-------RVLQLYLNKLHGTLS 207
                  S+ G     +    N+  L L+ N +  + P         L L  NK    + 
Sbjct: 59  ------KSVQG-----IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENK----VK 103

Query: 208 EIH-FANLTKLSVFLVGANKLTLKVKRDWIPPF----QLIELGLRSCDVGSRFPLWLYSQ 262
           ++    +L KL    +  N ++       I       QL  L L +  +     L     
Sbjct: 104 DLSSLKDLKKLKSLSLEHNGISD------INGLVHLPQLESLYLGNNKITDITVLS--RL 155

Query: 263 KDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANN 322
             L  L L ++ IS   P   L   ++L  L L  N I  +L  L     L  L L +  
Sbjct: 156 TKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHIS-DLRALAGLKNLDVLELFSQE 211

Query: 323 FSGSLPLISSNLTVL 337
                    SNL V 
Sbjct: 212 CLNKPINHQSNLVVP 226

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 54.5 bits (131), Expect = 4e-08
 Identities = 47/239 (19%), Positives = 79/239 (33%), Gaps = 50/239 (20%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSH-NQFDNSFVPAWVFGLSRLHFLNLG 60
              L  L L   +L       +A  S L  L+LS  + F    +   +   SRL  LNL 
Sbjct: 117 CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLS 176

Query: 61  Y------NNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSY-NSLE 113
           +       + Q  +    + +T L   G   N   S +     R  +L HL LS    L+
Sbjct: 177 WCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK 236

Query: 114 GRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQ- 172
               +   +L  L+ L L                S C                  +  + 
Sbjct: 237 NDCFQEFFQLNYLQHLSL----------------SRCY----------------DIIPET 264

Query: 173 ---LGQFKNLDSLDLSNN-SIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKL 227
              LG+   L +L +         ++L+  L  L     +I+ ++ T ++   +G  K 
Sbjct: 265 LLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHL-----QINCSHFTTIARPTIGNKKN 318

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 48.0 bits (114), Expect = 6e-06
 Identities = 39/207 (18%), Positives = 73/207 (35%), Gaps = 19/207 (9%)

Query: 2   LPSLVELDLSNCQ-LHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLG 60
           L S   +     +     P     +   +  +DLS++  + S +   +   S+L  L+L 
Sbjct: 67  LLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 126

Query: 61  YNNFQGPIPEGLQNLTSLKHLGLPFNHF--SSSVPKWFDRLTHLEHLSLSYNSL--EGRI 116
                 PI   L   ++L  L L         ++       + L+ L+LS+     E  +
Sbjct: 127 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHV 186

Query: 117 PRSMARLC-NLRRLYLGGAKLNQEISE--ILEIFSGCVSNGLESLALASSSISGHLTDQ- 172
             ++A +   + +L L G    + + +  +  +   C    L  L L+ S     L +  
Sbjct: 187 QVAVAHVSETITQLNLSG--YRKNLQKSDLSTLVRRC--PNLVHLDLSDSV---MLKNDC 239

Query: 173 ---LGQFKNLDSLDLSNNSIVGPRVLQ 196
                Q   L  L LS    + P  L 
Sbjct: 240 FQEFFQLNYLQHLSLSRCYDIIPETLL 266

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 54.3 bits (131), Expect = 6e-08
 Identities = 36/205 (17%), Positives = 69/205 (33%), Gaps = 23/205 (11%)

Query: 1   MLPSLVELDLSNCQL-----HHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLS--- 52
           +     +L L    L          L + +   +TTL LS+N    + V   + GL+   
Sbjct: 124 VFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNT 183

Query: 53  RLHFLNLGYNNFQGP----IPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRL----THLEH 104
            +  L+L +          +   L     L+ L + +N    +      R       LE 
Sbjct: 184 SVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLEL 243

Query: 105 LSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSS 164
           L L +N L          L +L     GGA++   ++E   +           L+    +
Sbjct: 244 LHLYFNELS---SEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWS----VILSEVQRN 296

Query: 165 ISGHLTDQLGQFKNLDSLDLSNNSI 189
           ++     ++ +   L   DL ++  
Sbjct: 297 LNSWDRARVQRHLELLLRDLEDSRG 321

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 52.4 bits (126), Expect = 3e-07
 Identities = 50/307 (16%), Positives = 91/307 (29%), Gaps = 56/307 (18%)

Query: 27  STLTTLDLSHNQFDNSFVPAWVFGL----SRLHFLNLGYNNFQGPIPEGLQNL----TSL 78
           S+L  L+L+  +            L      L  +NL         P GL+ L       
Sbjct: 72  SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLD---PAGLRTLLPVFLRA 128

Query: 79  KHLGLPFNHFSSSVPKWF-----DRLTHLEHLSLSYNSLEGR----IPRSMARLCNLRRL 129
           + LGL  N       K            +  L LS N L       +   +A   ++  L
Sbjct: 129 RKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHL 188

Query: 130 YLGGAKLN----QEISEILEIFSGCVSNGLESLALASSSISG----HLTDQLGQFKNLDS 181
            L    L     + ++  L+      +  L+ L +A +         L     +  +L+ 
Sbjct: 189 SLLHTGLGDEGLELLAAQLD-----RNRQLQELNVAYNGAGDTAALALARAAREHPSLEL 243

Query: 182 LDLSNNSI--VGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPF 239
           L L  N +   G +VL+                   ++ V L     ++           
Sbjct: 244 LHLYFNELSSEGRQVLRDLGGAAE---------GGARVVVSLTEGTAVSEYWS------- 287

Query: 240 QLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRL---LKSASQLYLLDLG 296
            ++    R+ +   R    +    +L   DL +S  +   P R    L+   ++  L   
Sbjct: 288 VILSEVQRNLNSWDR--ARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQ 345

Query: 297 HNQIHGE 303
                  
Sbjct: 346 LGSSGSP 352

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 31/102 (30%), Positives = 43/102 (42%), Gaps = 7/102 (6%)

Query: 12  NCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLGYNNFQGPIPE 70
           +C       +P    +T   L L  NQ     +   VF  L++L  L+L  N     +P 
Sbjct: 15  DCSGKSLASVPTGIPTTTQVLYLYDNQITK--LEPGVFDRLTQLTRLDLDNNQLTV-LPA 71

Query: 71  GL-QNLTSLKHLGLPFNHFSSSVPK-WFDRLTHLEHLSLSYN 110
           G+   LT L  L L  N   S +P+  FD L  L H+ L  N
Sbjct: 72  GVFDKLTQLTQLSLNDNQLKS-IPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 32/104 (30%), Positives = 45/104 (43%), Gaps = 8/104 (7%)

Query: 30  TTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGL-QNLTSLKHLGLPFNHF 88
           TT+D S      + VP  +   +    L L  N     +  G+   LT L  L L  N  
Sbjct: 12  TTVDCSGKSL--ASVPTGI--PTTTQVLYLYDNQITK-LEPGVFDRLTQLTRLDLDNNQL 66

Query: 89  SSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSM-ARLCNLRRLYL 131
           +      FD+LT L  LSL+ N L+  IPR     L +L  ++L
Sbjct: 67  TVLPAGVFDKLTQLTQLSLNDNQLK-SIPRGAFDNLKSLTHIWL 109

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 26/115 (22%), Positives = 44/115 (38%), Gaps = 3/115 (2%)

Query: 20  QLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLK 79
           +L     + +  L L + + ++  +         L FL+L            L  L  LK
Sbjct: 17  ELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI--SVSNLPKLPKLK 74

Query: 80  HLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEG-RIPRSMARLCNLRRLYLGG 133
            L L  N     +    ++L +L HL+LS N L+       + +L  L+ L L  
Sbjct: 75  KLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFN 129

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.8 bits (101), Expect = 8e-05
 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 7/87 (8%)

Query: 361 KLKFLFLD-RNILQGKLPDCWMSYQNLMALDLSNNKFT--GNLPTSLGSLSSLVSLHLRK 417
            ++ L LD      GK+      + NL  L L N       NLP     L  L  L L +
Sbjct: 25  AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLP----KLPKLKKLELSE 80

Query: 418 NRLSGTIPILLKNCTSLVTLDVGENEV 444
           NR+ G + +L +   +L  L++  N++
Sbjct: 81  NRIFGGLDMLAEKLPNLTHLNLSGNKL 107

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 30/141 (21%), Positives = 48/141 (34%), Gaps = 31/141 (21%)

Query: 51  LSRLHFLNL-GYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSY 109
            + +  L L    +  G I        +L+ L L      S       +L  L+ L LS 
Sbjct: 23  PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN--LPKLPKLKKLELSE 80

Query: 110 NSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHL 169
           N + G +     +L NL  L L G   N+ + +I  +                       
Sbjct: 81  NRIFGGLDMLAEKLPNLTHLNLSG---NK-LKDISTL----------------------- 113

Query: 170 TDQLGQFKNLDSLDLSNNSIV 190
            + L + + L SLDL N  + 
Sbjct: 114 -EPLKKLECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 25/87 (28%), Positives = 31/87 (35%), Gaps = 4/87 (4%)

Query: 1   MLPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLG 60
              +L  L L N  L     LP      L  L+LS N+     +      L  L  LNL 
Sbjct: 47  EFVNLEFLSLINVGLISVSNLP--KLPKLKKLELSENRI-FGGLDMLAEKLPNLTHLNLS 103

Query: 61  YNNFQGP-IPEGLQNLTSLKHLGLPFN 86
            N  +     E L+ L  LK L L   
Sbjct: 104 GNKLKDISTLEPLKKLECLKSLDLFNC 130

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 50.3 bits (121), Expect = 2e-07
 Identities = 33/102 (32%), Positives = 42/102 (41%), Gaps = 7/102 (6%)

Query: 12  NCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLGYNNFQGPIPE 70
           NCQ      +P    +    L L++NQ     +   VF  L  L  L    N     IP 
Sbjct: 18  NCQNIRLASVPAGIPTDKQRLWLNNNQITK--LEPGVFDHLVNLQQLYFNSNKLTA-IPT 74

Query: 71  GL-QNLTSLKHLGLPFNHFSSSVPK-WFDRLTHLEHLSLSYN 110
           G+   LT L  L L  NH  S +P+  FD L  L H+ L  N
Sbjct: 75  GVFDKLTQLTQLDLNDNHLKS-IPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 4/77 (5%)

Query: 57  LNLGYNNFQGPIPEGL-QNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGR 115
           L L  N     +  G+  +L +L+ L    N  ++     FD+LT L  L L+ N L+  
Sbjct: 38  LWLNNNQITK-LEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK-S 95

Query: 116 IPRSM-ARLCNLRRLYL 131
           IPR     L +L  +YL
Sbjct: 96  IPRGAFDNLKSLTHIYL 112

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 26/115 (22%), Positives = 44/115 (38%), Gaps = 3/115 (2%)

Query: 20  QLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLK 79
           +L     S +  L L +++ +   +         L FL+             L  L  LK
Sbjct: 10  ELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT--SIANLPKLNKLK 67

Query: 80  HLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEG-RIPRSMARLCNLRRLYLGG 133
            L L  N  S  +    ++  +L HL+LS N ++       + +L NL+ L L  
Sbjct: 68  KLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFN 122

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.7 bits (101), Expect = 6e-05
 Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 9/121 (7%)

Query: 71  GLQNLTSLKHLGLPFNHFSS-SVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRL 129
             +  + +K L L  +  +   +    D    LE LS     L   I  ++ +L  L++L
Sbjct: 12  RNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIA-NLPKLNKLKKL 69

Query: 130 YLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLT-DQLGQFKNLDSLDLSNNS 188
            L     +  +S  LE+ +    N L  L L+ + I    T + L + +NL SLDL N  
Sbjct: 70  ELS----DNRVSGGLEVLAEKCPN-LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE 124

Query: 189 I 189
           +
Sbjct: 125 V 125

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.4 bits (100), Expect = 8e-05
 Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 7/87 (8%)

Query: 361 KLKFLFLD-RNILQGKLPDCWMSYQNLMALDLSNNKFT--GNLPTSLGSLSSLVSLHLRK 417
            +K L LD     +GKL      ++ L  L   N   T   NLP     L+ L  L L  
Sbjct: 18  DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLP----KLNKLKKLELSD 73

Query: 418 NRLSGTIPILLKNCTSLVTLDVGENEV 444
           NR+SG + +L + C +L  L++  N++
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKI 100

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 23/86 (26%), Positives = 31/86 (36%), Gaps = 4/86 (4%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
              L  L   N  L     LP    + L  L+LS N+  +  +         L  LNL  
Sbjct: 41  FEELEFLSTINVGLTSIANLP--KLNKLKKLELSDNRV-SGGLEVLAEKCPNLTHLNLSG 97

Query: 62  NNFQGP-IPEGLQNLTSLKHLGLPFN 86
           N  +     E L+ L +LK L L   
Sbjct: 98  NKIKDLSTIEPLKKLENLKSLDLFNC 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 27/133 (20%), Positives = 39/133 (29%), Gaps = 29/133 (21%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
                ELDL   ++     L  A       +D S N+            + +L       
Sbjct: 18  AVRDRELDLRGYKIPVIENLG-ATLDQFDAIDFSDNE------------IRKL------- 57

Query: 62  NNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEG-RIPRSM 120
                   +G   L  LK L +  N            L  L  L L+ NSL        +
Sbjct: 58  --------DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPL 109

Query: 121 ARLCNLRRLYLGG 133
           A L +L  L +  
Sbjct: 110 ASLKSLTYLCILR 122

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 25/123 (20%), Positives = 42/123 (34%), Gaps = 11/123 (8%)

Query: 70  EGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRL 129
               N    + L L        +      L   + +  S N +  ++      L  L+ L
Sbjct: 13  AQYTNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTL 69

Query: 130 YLGGAKLNQEISEILEIFSGCVSNGLESLALASSSIS--GHLTDQLGQFKNLDSLDLSNN 187
            +     N  I  I E     + + L  L L ++S+   G L D L   K+L  L +  N
Sbjct: 70  LVN----NNRICRIGEGLDQALPD-LTELILTNNSLVELGDL-DPLASLKSLTYLCILRN 123

Query: 188 SIV 190
            + 
Sbjct: 124 PVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 7/90 (7%)

Query: 357 NETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFT--GNLPTSLGSLSSLVSLH 414
              ++ + L L    +   + +   +     A+D S+N+       P     L  L +L 
Sbjct: 16  TNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFP----LLRRLKTLL 70

Query: 415 LRKNRLSGTIPILLKNCTSLVTLDVGENEV 444
           +  NR+      L +    L  L +  N +
Sbjct: 71  VNNNRICRIGEGLDQALPDLTELILTNNSL 100

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 24/114 (21%), Positives = 39/114 (34%), Gaps = 8/114 (7%)

Query: 332 SNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDL 391
                L+L G  +   I +              +    N ++ KL D +   + L  L +
Sbjct: 19  VRDRELDLRGYKIP-VIENLGATLDQ----FDAIDFSDNEIR-KL-DGFPLLRRLKTLLV 71

Query: 392 SNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPIL-LKNCTSLVTLDVGENEV 444
           +NN+          +L  L  L L  N L     +  L +  SL  L +  N V
Sbjct: 72  NNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPV 125

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 51.5 bits (123), Expect = 7e-07
 Identities = 70/457 (15%), Positives = 126/457 (27%), Gaps = 66/457 (14%)

Query: 2   LPSLVELDLSNCQL--HHFPQLPVANFSTLTTLDLSH-NQFDNSFVPAWVFGLSRLHFLN 58
           L  L  +      +      +L  A    L TL L   + F    + + V    ++  L 
Sbjct: 111 LRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLL 170

Query: 59  LGYNNFQGPIPEGL----QNLTSLKHLGLPFNHFS----SSVPKWFDRLTHLEHLSLSYN 110
           +  ++F     + L    Q+ TSL+ L      F+      +         L  + +   
Sbjct: 171 MEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF 230

Query: 111 SLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLT 170
            +   +        NL     G    +  + E               L+    +    L 
Sbjct: 231 EI-LELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILF 289

Query: 171 DQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFAN-LTKLSVFLVGANKLTL 229
                   +  LDL    +       L + K    L  +   N +    + ++      L
Sbjct: 290 PFA---AQIRKLDLLYALLETEDHCTL-IQKCPN-LEVLETRNVIGDRGLEVLAQYCKQL 344

Query: 230 KVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQ 289
           K             L +                 D Q ++     +S      L +   +
Sbjct: 345 K------------RLRIERGA-------------DEQGMEDEEGLVSQRGLIALAQGCQE 379

Query: 290 LYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIF 349
           L  + +  + I       T  S    L  I         L    L +L+        P+ 
Sbjct: 380 LEYMAVYVSDI-------TNES----LESIGTYLKN---LCDFRLVLLDREERITDLPLD 425

Query: 350 HFLCYTINETMKLKFLFLDRNILQGKLPDCWMSY-----QNLMALDLSNNKFTGN-LPTS 403
           + +   +    KL+       + QG L D  +SY      N+  + L     +   L   
Sbjct: 426 NGVRSLLIGCKKLR--RFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEF 483

Query: 404 LGSLSSLVSLHLRKNRLS-GTIPILLKNCTSLVTLDV 439
                +L  L +R    S   I   +    SL  L V
Sbjct: 484 SRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWV 520

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 49.6 bits (118), Expect = 2e-06
 Identities = 72/468 (15%), Positives = 141/468 (30%), Gaps = 61/468 (13%)

Query: 7   ELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQG 66
            + ++ C      +L    F  L +L L               G  R    NL   N+ G
Sbjct: 54  HVTMALCYTATPDRL-SRRFPNLRSLKLK--------------GKPRAAMFNLIPENWGG 98

Query: 67  PIPEGL----QNLTSLKHLGLPFNHFSSSVPKWF--DRLTHLEHLSLSY-NSLEGRIPRS 119
            +   +     NL  LK +       S          R   LE L L   +        S
Sbjct: 99  YVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLS 158

Query: 120 MARLC-NLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQ-----L 173
           +   C  ++ L +  +  +++  + L   +   ++ LE L    +  +  ++ +      
Sbjct: 159 IVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTS-LEVLNFYMTEFA-KISPKDLETIA 216

Query: 174 GQFKNLDSLDLSNNSIVGPRVLQLYLNKLH--GTLSEIHFANLTKLSVFLVGANKLTLKV 231
              ++L S+ + +  I+           L      S      + +  + LV   KL    
Sbjct: 217 RNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLG 276

Query: 232 KRDWIPPF---------QLIELGLRSCDVGSRFPLWLYSQ-KDLQFLDLFNSGISGTFPN 281
                P           Q+ +L L    + +     L  +  +L+ L+  N  I      
Sbjct: 277 LSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV-IGDRGLE 335

Query: 282 RLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSG 341
            L +   QL  L +       E     +   +S   LIA      L      L  + +  
Sbjct: 336 VLAQYCKQLKRLRIERG--ADEQGMEDEEGLVSQRGLIA------LAQGCQELEYMAVYV 387

Query: 342 NSLSGPIFHFLCYTINETMKLKFLFLDR--NILQGKLPDCWMSY----QNLMALDLSNN- 394
           + ++      +   +      + + LDR   I    L +   S     + L         
Sbjct: 388 SDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQ 447

Query: 395 -KFTGNLPTSLGSL-SSLVSLHLRKNRLSGT-IPILLKNCTSLVTLDV 439
              T    + +G    ++  + L     S   +    + C +L  L++
Sbjct: 448 GGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEM 495

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 49.3 bits (118), Expect = 8e-07
 Identities = 38/166 (22%), Positives = 56/166 (33%), Gaps = 41/166 (24%)

Query: 28  TLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNH 87
               L       +   + A +  L     L L  NN +  I   L  + +L+ L L  N 
Sbjct: 26  EKVELHGMIPPIEK--MDATLSTLKACKHLALSTNNIEK-I-SSLSGMENLRILSLGRNL 81

Query: 88  FSSSVPKWFDRLTHLEHLSLSYN---SLEGRIPRSMARLCNLRRLYLGGAKLNQEISEIL 144
               +         LE L +SYN   SL G     + +L NLR LY+     N+ I+   
Sbjct: 82  I-KKIENLDAVADTLEELWISYNQIASLSG-----IEKLVNLRVLYMSN---NK-ITNWG 131

Query: 145 EIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLDLSNNSIV 190
           EI                        D+L     L+ L L+ N + 
Sbjct: 132 EI------------------------DKLAALDKLEDLLLAGNPLY 153

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 24/110 (21%), Positives = 37/110 (33%), Gaps = 7/110 (6%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
           L +   L LS   +     L  +    L  L L  N      +         L  L + Y
Sbjct: 47  LKACKHLALSTNNIEKISSL--SGMENLRILSLGRNLIKK--IENLDAVADTLEELWISY 102

Query: 62  NNFQGPIPEGLQNLTSLKHLGLPFNHFSS-SVPKWFDRLTHLEHLSLSYN 110
           N        G++ L +L+ L +  N  ++         L  LE L L+ N
Sbjct: 103 NQIA--SLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 49.2 bits (116), Expect = 2e-06
 Identities = 28/190 (14%), Positives = 61/190 (32%), Gaps = 17/190 (8%)

Query: 15  LHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQN 74
           + +  +           +D    +            L  +  LN         +  G + 
Sbjct: 132 VENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKP 191

Query: 75  LTSLKHLGLPFNHFSSSVPKWF--DRLTHLEHLSLSYNSLEGRIPRSMARLC-------- 124
             +LK L +       SV +      L +LE L L     +      M            
Sbjct: 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRF 251

Query: 125 -NLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISG----HLTDQLGQFKNL 179
            NL+ L +  A+    + E+       +   LE++ +++  ++      L D + + K+L
Sbjct: 252 PNLKWLGIVDAEEQNVVVEMF--LESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHL 309

Query: 180 DSLDLSNNSI 189
             +++  N +
Sbjct: 310 KFINMKYNYL 319

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 45.3 bits (106), Expect = 5e-05
 Identities = 26/161 (16%), Positives = 56/161 (34%), Gaps = 17/161 (10%)

Query: 1   MLPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFG-LSRLHFLNL 59
           +L ++  L+    +  +   +       L +L++      +S V   +   L  L  L L
Sbjct: 167 VLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVL 226

Query: 60  GYNNFQGPIPEGLQNLT---------SLKHLGLPFNHFSSSVPKWF---DRLTHLEHLSL 107
                       +             +LK LG+      + V + F   D L  LE + +
Sbjct: 227 YVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDI 286

Query: 108 SYNSLEGR----IPRSMARLCNLRRLYLGGAKLNQEISEIL 144
           S   L       +   + ++ +L+ + +    L+ E+ + L
Sbjct: 287 SAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKEL 327

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.2 bits (103), Expect = 1e-04
 Identities = 20/143 (13%), Positives = 51/143 (35%), Gaps = 17/143 (11%)

Query: 2   LPSLVELDLSNCQL--HHFPQLPVANFSTLTTLDL---SHNQFDNSFVPAWVFGLS---- 52
            P+L  L++ +  L       +  ++   L  L L     +   +  +  +    S    
Sbjct: 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRF 251

Query: 53  -RLHFLNLGYNNFQGPIPEGL---QNLTSLKHLGLPFNHFSSS----VPKWFDRLTHLEH 104
             L +L +     Q  + E       L  L+ + +     +      +    D++ HL+ 
Sbjct: 252 PNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKF 311

Query: 105 LSLSYNSLEGRIPRSMARLCNLR 127
           +++ YN L   + + + +   ++
Sbjct: 312 INMKYNYLSDEMKKELQKSLPMK 334

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 29/147 (19%), Positives = 50/147 (34%), Gaps = 20/147 (13%)

Query: 3   PSLVELDLSN-CQLHHFPQLPVANF----STLTTLDLSHNQFDNSFVPAWVFGL---SRL 54
           P L E++L+N   +        A      + +    +   + ++    A    L   + L
Sbjct: 36  PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTL 95

Query: 55  HFLNLGYNNFQGP----IPEGLQNLTSLKHLGLPFNH--FSSSVPKWFDRL----THLEH 104
             LN+  N   G     + E LQ+ TSL  L +        ++V      +    T L  
Sbjct: 96  KSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLK 155

Query: 105 LSLSYNSLEGRIPRSMARLCN--LRRL 129
               +     R+  S A + N  L R 
Sbjct: 156 FGYHFTQQGPRLRASNAMMNNNDLVRK 182

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	695
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.98
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.98
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.89
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.88
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.88
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.88
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.88
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.88
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.87
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.85
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.83
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.82
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.82
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.81
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.81
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.8
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.8
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.78
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.77
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.77
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.76
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.76
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.75
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.75
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.75
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.74
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.74
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.73
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.73
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.73
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.71
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.71
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.7
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.7
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.7
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.67
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.66
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.66
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.64
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.64
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.64
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.63
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.63
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.6
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.6
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.58
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.56
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.53
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.51
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.49
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.47
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.47
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.45
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.44
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.43
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.39
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.36
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.29
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.27
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.2
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.18
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.13
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.98
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.8
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.75
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.59
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.56
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.26
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.25
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.16
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.04
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.55
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.48
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.81
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.7

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.1e-76  Score=674.20  Aligned_cols=648  Identities=31%  Similarity=0.427  Sum_probs=493.3

Q ss_pred             CCcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCch--hhcCCCCCCEEEcCCCcCcccCCccC-CCCCCCCE
Q 036216            4 SLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPA--WVFGLSRLHFLNLGYNNFQGPIPEGL-QNLTSLKH   80 (695)
Q Consensus         4 ~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~--~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~   80 (695)
                      .|+.++++.+.+..++. .|..+++|++|+|++|.+.+. +|.  .++++++|++|+|++|.+.+..|..+ .++++|++
T Consensus        78 ~L~~l~~~~~~~~~l~~-~~~~l~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~  155 (768)
T 3rgz_A           78 GLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGP-VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEV  155 (768)
T ss_dssp             TCCEEECTTSCEEECCC-CCCCCTTCCEEECCSSEEEEE-GGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSE
T ss_pred             cccccCCcCCCcCCCch-hhccCCCCCEEECCCCcCCCc-CCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCE
Confidence            33444444443333222 455555555555555555543 444  55555555555555555554444443 55555555


Q ss_pred             EeCCCCCCCCCchhh---hcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccce
Q 036216           81 LGLPFNHFSSSVPKW---FDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLES  157 (695)
Q Consensus        81 L~L~~n~l~~~~p~~---~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~  157 (695)
                      |++++|.+++..|..   +.++++|++|++++|.+.+..+.  ..+++|++|++++|.+.+..+.     ++.++. |++
T Consensus       156 L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-----l~~l~~-L~~  227 (768)
T 3rgz_A          156 LDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-----LGDCSA-LQH  227 (768)
T ss_dssp             EECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-----CTTCCS-CCE
T ss_pred             EECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-----cccCCC-CCE
Confidence            555555555554444   45555555555555555543332  4555566666665555544332     233333 566


Q ss_pred             EEccCcccccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCC
Q 036216          158 LALASSSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIP  237 (695)
Q Consensus       158 L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  237 (695)
                      |++++|.+++..|..++.+++|++|++++|.+             .+.++..   .+++|+.|++++|.+.+..+..+..
T Consensus       228 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l-------------~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~  291 (768)
T 3rgz_A          228 LDISGNKLSGDFSRAISTCTELKLLNISSNQF-------------VGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSG  291 (768)
T ss_dssp             EECCSSCCCSCHHHHTTTCSSCCEEECCSSCC-------------EESCCCC---CCTTCCEEECCSSEEEESCCCCSCT
T ss_pred             EECcCCcCCCcccHHHhcCCCCCEEECCCCcc-------------cCccCcc---ccCCCCEEECcCCccCCccCHHHHh
Confidence            66666665555555555666666666655554             4566652   8899999999999999888888876


Q ss_pred             C-CCccEEEccCCCCCCCCCccccCCCCCCEEEcccCCCccccChHHhhcccccceeeccccccccccc-CccccC-ccc
Q 036216          238 P-FQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELT-NLTKAS-QLS  314 (695)
Q Consensus       238 ~-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~-~L~  314 (695)
                      . ++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|...+..+++|++|++++|.+.+.++ .+..++ +|+
T Consensus       292 ~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~  371 (768)
T 3rgz_A          292 ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLL  371 (768)
T ss_dssp             TCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCS
T ss_pred             hcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCc
Confidence            5 9999999999999999999999999999999999999999999888899999999999999987666 666676 999


Q ss_pred             eEecccccceeecCCC-----CCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEE
Q 036216          315 YLSLIANNFSGSLPLI-----SSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMAL  389 (695)
Q Consensus       315 ~L~l~~n~~~~~~~~~-----~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L  389 (695)
                      +|++++|.+.+..+..     +++|++|++++|.+++.+|..+.    .+++|+.|++++|.+++.+|..+..+++|++|
T Consensus       372 ~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~----~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  447 (768)
T 3rgz_A          372 TLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS----NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL  447 (768)
T ss_dssp             EEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGG----GCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred             EEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHh----cCCCCCEEECcCCcccCcccHHHhcCCCCCEE
Confidence            9999999999887765     45799999999999887776554    59999999999999999999999999999999


Q ss_pred             eCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcc
Q 036216          390 DLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNF  469 (695)
Q Consensus       390 ~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~  469 (695)
                      ++++|.+.+.+|..+..+++|++|++++|++.+.+|..+..+++|+.|++++|.+.+.+|.++. .+++|++|++++|++
T Consensus       448 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N~l  526 (768)
T 3rgz_A          448 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNNSF  526 (768)
T ss_dssp             ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECCSSCC
T ss_pred             ECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHh-cCCCCCEEECCCCcc
Confidence            9999999999999999999999999999999999999999999999999999999999999887 799999999999999


Q ss_pred             cccCCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCC--------------CCCCc---
Q 036216          470 DGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNST--------------IGPGT---  532 (695)
Q Consensus       470 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~--------------~~~~~---  532 (695)
                      ++.+|..++.+++|++|++++|+++|.+|..+.....+..++...+..+.+.......              .....   
T Consensus       527 ~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  606 (768)
T 3rgz_A          527 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR  606 (768)
T ss_dssp             EEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGG
T ss_pred             cCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhc
Confidence            9999999999999999999999999999999888777665554443332221110000              00000   


Q ss_pred             ccc-----ceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEE
Q 036216          533 VTE-----QELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESID  607 (695)
Q Consensus       533 ~~~-----~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  607 (695)
                      +..     .......+........++.++.||+++|+++|.+|..++++++|++|+|++|+++|.+|+.|+++++|+.||
T Consensus       607 l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~Ld  686 (768)
T 3rgz_A          607 LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD  686 (768)
T ss_dssp             GGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred             cccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEE
Confidence            000     000111122222334567899999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcccccCCcCCcCCCCCCEEEcccCcCcccCCCCcccCccccccccCC-cccCCCCCCCCCCCCCCCCCCCCCC
Q 036216          608 FSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSSTQLQSFNASCFLGN-NLCGAPLPKNCTDENVSIPEDVNGE  683 (695)
Q Consensus       608 Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~iP~~~~~~~~~~~~~~~n-~l~~~~~~~~c~~~~~~~~~~~~~~  683 (695)
                      |++|+++|.+|..++.+++|++||+++|+++|.||+.+++.++...+|.|| .|||+|++ +|.......|++..+.
T Consensus       687 Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~~~~~~~~~~~  762 (768)
T 3rgz_A          687 LSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSNADGYAHHQRS  762 (768)
T ss_dssp             CCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC----------
T ss_pred             CCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCCccCCCCCCCCc
Confidence            999999999999999999999999999999999999999999999999999 89999987 8998888777665553

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=9e-69  Score=609.33  Aligned_cols=631  Identities=29%  Similarity=0.406  Sum_probs=545.6

Q ss_pred             CCCcEEEcCCCcCCCC---CccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCc--cCCCCCC
Q 036216            3 PSLVELDLSNCQLHHF---PQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPE--GLQNLTS   77 (695)
Q Consensus         3 ~~L~~L~ls~~~l~~~---~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~--~~~~l~~   77 (695)
                      .+++.|+|+++.+.+.   .+.++.++++|+.++++.+.+..  .|..++.+++|++|+|++|.+.+.+|.  .++++++
T Consensus        50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~--l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~  127 (768)
T 3rgz_A           50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHING--SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSG  127 (768)
T ss_dssp             TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEE--CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTT
T ss_pred             CcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCC--CchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCC
Confidence            3688999999998874   34578999999999999998865  678899999999999999999988888  9999999


Q ss_pred             CCEEeCCCCCCCCCchhhh-cCCCCCCEEEcccCcCCcccchh---hcCCCCCCEEEccCCcCccccchhhhhhhccccc
Q 036216           78 LKHLGLPFNHFSSSVPKWF-DRLTHLEHLSLSYNSLEGRIPRS---MARLCNLRRLYLGGAKLNQEISEILEIFSGCVSN  153 (695)
Q Consensus        78 L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~  153 (695)
                      |++|++++|.+.+..|..+ .++++|++|++++|.+++..|..   +.++++|++|++++|.+.+..+.      ..+..
T Consensus       128 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~------~~l~~  201 (768)
T 3rgz_A          128 LKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV------SRCVN  201 (768)
T ss_dssp             CCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC------TTCTT
T ss_pred             CCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc------ccCCc
Confidence            9999999999988877766 88999999999999999888877   88999999999999999876543      34555


Q ss_pred             ccceEEccCcccccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCC
Q 036216          154 GLESLALASSSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKR  233 (695)
Q Consensus       154 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~  233 (695)
                       |++|++++|.+.+.+|. ++.+++|++|++++|.++             +.++. .+.++++|++|++++|.+.+..+.
T Consensus       202 -L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~-------------~~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~  265 (768)
T 3rgz_A          202 -LEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLS-------------GDFSR-AISTCTELKLLNISSNQFVGPIPP  265 (768)
T ss_dssp             -CCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCC-------------SCHHH-HTTTCSSCCEEECCSSCCEESCCC
T ss_pred             -CCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCC-------------CcccH-HHhcCCCCCEEECCCCcccCccCc
Confidence             99999999999998887 999999999999999986             23444 789999999999999999877666


Q ss_pred             CCCCCCCccEEEccCCCCCCCCCccccCC-CCCCEEEcccCCCccccChHHhhcccccceeeccccccccccc-C-cccc
Q 036216          234 DWIPPFQLIELGLRSCDVGSRFPLWLYSQ-KDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELT-N-LTKA  310 (695)
Q Consensus       234 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~-~~~~  310 (695)
                      .  .+++|++|++++|.+.+.+|.++... ++|++|++++|.+.+.+|..+ ..+++|++|++++|.+.+.++ . +..+
T Consensus       266 ~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~ip~~~l~~l  342 (768)
T 3rgz_A          266 L--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF-GSCSLLESLALSSNNFSGELPMDTLLKM  342 (768)
T ss_dssp             C--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGG-GGCTTCCEEECCSSEEEEECCHHHHTTC
T ss_pred             c--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHH-hcCCCccEEECCCCcccCcCCHHHHhcC
Confidence            5  88999999999999998899888775 999999999999998887765 679999999999999997766 3 7889


Q ss_pred             CccceEecccccceeecCCCC----CCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCC
Q 036216          311 SQLSYLSLIANNFSGSLPLIS----SNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNL  386 (695)
Q Consensus       311 ~~L~~L~l~~n~~~~~~~~~~----~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L  386 (695)
                      ++|++|++++|.+.+.+|..+    ++|+.|++++|.+++.++..++.  ..+++|++|++++|.+++.+|..+..+++|
T Consensus       343 ~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~--~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L  420 (768)
T 3rgz_A          343 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ--NPKNTLQELYLQNNGFTGKIPPTLSNCSEL  420 (768)
T ss_dssp             TTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTC--STTCCCCEEECCSSEEEEECCGGGGGCTTC
T ss_pred             CCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhh--cccCCccEEECCCCccccccCHHHhcCCCC
Confidence            999999999999999888764    38999999999998877765542  126789999999999999999999999999


Q ss_pred             CEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCC
Q 036216          387 MALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRS  466 (695)
Q Consensus       387 ~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~  466 (695)
                      ++|++++|.+++..|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+. .+++|++|++++
T Consensus       421 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~L~~  499 (768)
T 3rgz_A          421 VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS-NCTNLNWISLSN  499 (768)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECCS
T ss_pred             CEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHh-cCCCCCEEEccC
Confidence            9999999999999999999999999999999999999999999999999999999999999998886 799999999999


Q ss_pred             CcccccCCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCC--CCCCCCCc---cccceEEE-
Q 036216          467 NNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPL--NSTIGPGT---VTEQELVV-  540 (695)
Q Consensus       467 n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~--~~~~~~~~---~~~~~~~~-  540 (695)
                      |++++.+|.+++.+++|++|++++|++++.+|..+..+++|+.++ ++++.+....+.  +.......   ........ 
T Consensus       500 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~-Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~  578 (768)
T 3rgz_A          500 NRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD-LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYI  578 (768)
T ss_dssp             SCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEE-CCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEE
T ss_pred             CccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEE-CCCCccCCcCChHHhcccchhhhhcccccccccc
Confidence            999999999999999999999999999999999999999999998 344444322221  11000000   00000000 


Q ss_pred             -----------------ecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCC
Q 036216          541 -----------------TKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSL  603 (695)
Q Consensus       541 -----------------~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  603 (695)
                                       ..+........+..++.++++.|.+.|.+|..++.+++|+.|||++|+++|.+|..|+++++|
T Consensus       579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L  658 (768)
T 3rgz_A          579 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYL  658 (768)
T ss_dssp             ECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTC
T ss_pred             ccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccC
Confidence                             111222223445556778889999999999999999999999999999999999999999999


Q ss_pred             CEEECCCCcccccCCcCCcCCCCCCEEEcccCcCcccCCCC-cccCccccccccCCcccCCC
Q 036216          604 ESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSS-TQLQSFNASCFLGNNLCGAP  664 (695)
Q Consensus       604 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~iP~~-~~~~~~~~~~~~~n~l~~~~  664 (695)
                      +.|+|++|+++|.+|+.++.+++|++|||++|+++|.+|.. ..+..+....+.+|.+.|..
T Consensus       659 ~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~i  720 (768)
T 3rgz_A          659 FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI  720 (768)
T ss_dssp             CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEEC
T ss_pred             CEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccC
Confidence            99999999999999999999999999999999999999987 67888899999999887653

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=8.4e-60  Score=531.71  Aligned_cols=584  Identities=21%  Similarity=0.188  Sum_probs=449.4

Q ss_pred             CCCcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEe
Q 036216            3 PSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLG   82 (695)
Q Consensus         3 ~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   82 (695)
                      +++++|++++|.++.+++..|.++++|++|++++|.+++. .|+++.++++|++|+|++|.++...+.+|.++++|++|+
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  103 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH  103 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCC-CTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCcc-CHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence            4688888888888888887888888888888888888876 677788888888888888888866666788888888888


Q ss_pred             CCCCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccC
Q 036216           83 LPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALAS  162 (695)
Q Consensus        83 L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~  162 (695)
                      +++|.+++..|..|+++++|++|++++|.+.+..|..++++++|++|++++|.+++..+..+.  ...... |++|++++
T Consensus       104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~~~~~~-L~~L~L~~  180 (680)
T 1ziw_A          104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELD--IFANSS-LKKLELSS  180 (680)
T ss_dssp             CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHG--GGTTCE-ESEEECTT
T ss_pred             CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhh--cccccc-ccEEECCC
Confidence            888888877777888888888888888888877777888888888888888888776655221  112233 88888888


Q ss_pred             cccccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCCCC--
Q 036216          163 SSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQ--  240 (695)
Q Consensus       163 n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~--  240 (695)
                      |.+.+..+..+..+++|+.|+++++.+...         ....++.  ....++|+.|++++|.+.+..+..+..+..  
T Consensus       181 n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~---------~~~~~~~--~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~  249 (680)
T 1ziw_A          181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPS---------LTEKLCL--ELANTSIRNLSLSNSQLSTTSNTTFLGLKWTN  249 (680)
T ss_dssp             CCCCCBCTTGGGGSSEECEEECTTCCCHHH---------HHHHHHH--HHTTSCCCEEECTTSCCCEECTTTTGGGGGSC
T ss_pred             CcccccChhhhhhhhhhhhhhccccccChh---------hHHHHHH--HhhhccccEEEccCCcccccChhHhhccCcCC
Confidence            888888888888888888888887765310         0001111  114578899999999988888888877654  


Q ss_pred             ccEEEccCCCCCCCCCccccCCCCCCEEEcccCCCccccChHHhhcccccceeeccccccccc-----cc-----Ccccc
Q 036216          241 LIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGE-----LT-----NLTKA  310 (695)
Q Consensus       241 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~-----~~~~~  310 (695)
                      |++|++++|.+.+..|.++..+++|++|++++|.+.+..|. .+..+++|+.|++++|...+.     ++     .+..+
T Consensus       250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l  328 (680)
T 1ziw_A          250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH-SLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL  328 (680)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTT-TTTTCTTCCEEECTTCBCCC------CCEECTTTTTTC
T ss_pred             CCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChh-hhcCCCCccEEeccchhhhcccccccccccChhhcccC
Confidence            99999999998888888888899999999999988854443 456788999999988755431     11     45667


Q ss_pred             CccceEecccccceeecCCC---CCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCC
Q 036216          311 SQLSYLSLIANNFSGSLPLI---SSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLM  387 (695)
Q Consensus       311 ~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~  387 (695)
                      ++|++|++++|.+.+..+..   +++|++|++++|.+...........-...++|+.|++++|.+++..|.+|..+++|+
T Consensus       329 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~  408 (680)
T 1ziw_A          329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLE  408 (680)
T ss_dssp             TTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             CCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCC
Confidence            88889999888888766554   467888888888764332211111111135788888888888888888888888899


Q ss_pred             EEeCCCCcccccCC-ccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCccc--ccCChhhhhcCCCCcEEEc
Q 036216          388 ALDLSNNKFTGNLP-TSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVF--GNIPSWFGERFSRMVLLIL  464 (695)
Q Consensus       388 ~L~ls~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~--~~~~~~~~~~l~~L~~L~l  464 (695)
                      .|++++|.+.+.+| ..|..+++|++|++++|++.+..+..|..+++|+.|++++|.+.  +.+|..+. .+++|+.|++
T Consensus       409 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~-~l~~L~~L~L  487 (680)
T 1ziw_A          409 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ-PLRNLTILDL  487 (680)
T ss_dssp             EEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTT-TCTTCCEEEC
T ss_pred             EEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccc-cCCCCCEEEC
Confidence            99999888876555 67888888999999998888777888888888999999888775  45666665 6888888999


Q ss_pred             CCCcccccCCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCC
Q 036216          465 RSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGV  544 (695)
Q Consensus       465 ~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  544 (695)
                      ++|++++..+..|..+++|++|++++|++++..+..+..-+                                       
T Consensus       488 s~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~---------------------------------------  528 (680)
T 1ziw_A          488 SNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGP---------------------------------------  528 (680)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSC---------------------------------------
T ss_pred             CCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCc---------------------------------------
Confidence            88888877777788888889999988888743322211000                                       


Q ss_pred             cchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCc-C
Q 036216          545 AADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMS-S  623 (695)
Q Consensus       545 ~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~-~  623 (695)
                       ......++.|+.|++++|+++...+..|.++++|++|++++|++++..+..|+.+++|+.|++++|++++..|..+. .
T Consensus       529 -~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~  607 (680)
T 1ziw_A          529 -IYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPA  607 (680)
T ss_dssp             -CCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHH
T ss_pred             -chhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhccc
Confidence             00112345568999999999955556799999999999999999977777789999999999999999987777777 7


Q ss_pred             CCCCCEEEcccCcCcccCCC
Q 036216          624 LTFLNHLNLSNNYLTGKIPS  643 (695)
Q Consensus       624 l~~L~~L~ls~N~l~~~iP~  643 (695)
                      +++|++|++++|++.+..+.
T Consensus       608 ~~~L~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          608 FRNLTELDMRFNPFDCTCES  627 (680)
T ss_dssp             HTTCSEEECTTCCCCBCCCC
T ss_pred             ccccCEEEccCCCcccCCcc
Confidence            89999999999999987764

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.4e-58  Score=521.79  Aligned_cols=577  Identities=23%  Similarity=0.256  Sum_probs=460.9

Q ss_pred             CcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCC
Q 036216            5 LVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLP   84 (695)
Q Consensus         5 L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~   84 (695)
                      -+.+++++++++.+|.. +.  +++++|++++|.+++. .+..|.++++|++|++++|.+++..|.+|.++++|++|+++
T Consensus         6 ~~~~~cs~~~L~~ip~~-~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~   81 (680)
T 1ziw_A            6 HEVADCSHLKLTQVPDD-LP--TNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ   81 (680)
T ss_dssp             SSEEECCSSCCSSCCSC-SC--TTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECC
T ss_pred             CCeeECCCCCccccccc-cC--CCCcEEECCCCCCCCc-CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECC
Confidence            46799999999999973 33  7999999999999985 66679999999999999999998889999999999999999


Q ss_pred             CCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCcc
Q 036216           85 FNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSS  164 (695)
Q Consensus        85 ~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~  164 (695)
                      +|.+++..+..|+++++|++|++++|.+.+..|..|+++++|++|++++|.+.+..+.    .++.+.+ |++|++++|.
T Consensus        82 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~-L~~L~L~~n~  156 (680)
T 1ziw_A           82 HNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG----TQVQLEN-LQELLLSNNK  156 (680)
T ss_dssp             SSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCC----SSSCCTT-CCEEECCSSC
T ss_pred             CCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCch----hhccccc-CCEEEccCCc
Confidence            9999976666899999999999999999987778999999999999999999887666    4556666 9999999999


Q ss_pred             cccccchhcC--CCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCC---CCCC
Q 036216          165 ISGHLTDQLG--QFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDW---IPPF  239 (695)
Q Consensus       165 ~~~~~~~~l~--~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~~~  239 (695)
                      +++..+..+.  .+++|++|++++|.++              .+++..|..+++|+.+++.++.+.......+   ....
T Consensus       157 l~~~~~~~~~~~~~~~L~~L~L~~n~l~--------------~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~  222 (680)
T 1ziw_A          157 IQALKSEELDIFANSSLKKLELSSNQIK--------------EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANT  222 (680)
T ss_dssp             CCCBCHHHHGGGTTCEESEEECTTCCCC--------------CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTS
T ss_pred             ccccCHHHhhccccccccEEECCCCccc--------------ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhc
Confidence            9988877665  4589999999999886              4555578889999999998887653222111   1346


Q ss_pred             CccEEEccCCCCCCCCCccccCCCC--CCEEEcccCCCccccChHHhhcccccceeeccccccccccc-CccccCccceE
Q 036216          240 QLIELGLRSCDVGSRFPLWLYSQKD--LQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELT-NLTKASQLSYL  316 (695)
Q Consensus       240 ~L~~L~l~~~~~~~~~~~~l~~~~~--L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~L~~L  316 (695)
                      .|+.|++++|.+.+..|.++..++.  |++|++++|.+.+ ++...+..+++|+.|++++|.+.+..+ .+..+++|++|
T Consensus       223 ~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  301 (680)
T 1ziw_A          223 SIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV-VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL  301 (680)
T ss_dssp             CCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEE
T ss_pred             cccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCc-cCcccccCcccccEeeCCCCccCccChhhhcCCCCccEE
Confidence            8999999999998888888877754  9999999999884 444445778999999999999887766 67788899999


Q ss_pred             ecccccceee-----cC-------CCCCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCC--CCccccC
Q 036216          317 SLIANNFSGS-----LP-------LISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGK--LPDCWMS  382 (695)
Q Consensus       317 ~l~~n~~~~~-----~~-------~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~  382 (695)
                      ++++|...+.     +|       ..+++|+.|++++|.+.+..+..    |..+++|++|++++|.+...  ....|..
T Consensus       302 ~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~  377 (680)
T 1ziw_A          302 NLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNM----FTGLINLKYLSLSNSFTSLRTLTNETFVS  377 (680)
T ss_dssp             ECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTT----TTTCTTCCEEECTTCBSCCCEECTTTTGG
T ss_pred             eccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhH----hccccCCcEEECCCCchhhhhcchhhhcc
Confidence            9987654431     22       12467888888888887654433    34578888888888764322  2223332


Q ss_pred             C--CCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCC-ccccCCCCCcEEEcCCCcccccCChhhhhcCCCC
Q 036216          383 Y--QNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIP-ILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRM  459 (695)
Q Consensus       383 ~--~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L  459 (695)
                      +  ++|+.|++++|++++..|..|..+++|++|++++|.+.+.+| ..|.++++|++|++++|.+.+..+..+. .+++|
T Consensus       378 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~~~~L  456 (680)
T 1ziw_A          378 LAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFA-LVPSL  456 (680)
T ss_dssp             GTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTT-TCTTC
T ss_pred             cccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhh-cCccc
Confidence            2  578888888888887778888888888888888888876555 5777888888888888887655555554 68888


Q ss_pred             cEEEcCCCccc--ccCCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccce
Q 036216          460 VLLILRSNNFD--GPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQE  537 (695)
Q Consensus       460 ~~L~l~~n~~~--~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~  537 (695)
                      +.|++++|.+.  +..|..+..+++|++|++++|++++..|..|.++++|                              
T Consensus       457 ~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L------------------------------  506 (680)
T 1ziw_A          457 QRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL------------------------------  506 (680)
T ss_dssp             CEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC------------------------------
T ss_pred             ccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcccccc------------------------------
Confidence            88888888776  4667778888888888888888886666666666655                              


Q ss_pred             EEEecCCcchhhhhcccccEEEcCCccccccCC--------ccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECC
Q 036216          538 LVVTKGVAADYNEILNLVRIIDFSKNLFSGTLP--------MGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFS  609 (695)
Q Consensus       538 ~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p--------~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls  609 (695)
                                        ++|++++|++++..+        ..|.++++|++|+|++|+++...++.|+++++|+.|+++
T Consensus       507 ------------------~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls  568 (680)
T 1ziw_A          507 ------------------EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLG  568 (680)
T ss_dssp             ------------------CEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             ------------------CEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECC
Confidence                              889999999986532        237899999999999999995555679999999999999


Q ss_pred             CCcccccCCcCCcCCCCCCEEEcccCcCcccCCCC-c-ccCccccccccCC
Q 036216          610 VNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSS-T-QLQSFNASCFLGN  658 (695)
Q Consensus       610 ~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~iP~~-~-~~~~~~~~~~~~n  658 (695)
                      +|++++..+..|..+++|++|++++|++++..|.. . .+.++....+.||
T Consensus       569 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N  619 (680)
T 1ziw_A          569 LNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN  619 (680)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTC
T ss_pred             CCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCC
Confidence            99999777777899999999999999999877764 2 5677777777776

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=4.8e-55  Score=486.33  Aligned_cols=534  Identities=20%  Similarity=0.185  Sum_probs=406.4

Q ss_pred             CcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCC
Q 036216            5 LVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLP   84 (695)
Q Consensus         5 L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~   84 (695)
                      -+++++++..++.+|.. +.  +++++|++++|.+++. .|..|.++++|++|+|++|.+.+..|.+|.++++|++|+++
T Consensus        14 ~~~~~c~~~~l~~iP~~-l~--~~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls   89 (606)
T 3t6q_A           14 NKTYNCENLGLNEIPGT-LP--NSTECLEFSFNVLPTI-QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLT   89 (606)
T ss_dssp             TTEEECTTSCCSSCCTT-SC--TTCCEEECTTCCCSEE-CTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CceEECCCCCcccCcCC-CC--CcCcEEEccCCccCcC-ChhHhccCccceEEECCCCccceeChhhccCccccCeeeCC
Confidence            35688888888888863 32  4789999999999875 57788899999999999999988888889999999999999


Q ss_pred             CCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCcc
Q 036216           85 FNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSS  164 (695)
Q Consensus        85 ~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~  164 (695)
                      +|.+++..|..|+++++|++|++++|.+++..+..++++++|++|++++|++.+....                      
T Consensus        90 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~----------------------  147 (606)
T 3t6q_A           90 ANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLP----------------------  147 (606)
T ss_dssp             TCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCC----------------------
T ss_pred             CCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcc----------------------
Confidence            9999888888899999999999999998876677888888888888888887653211                      


Q ss_pred             cccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCC--EEEcccccceeecCCCCCCCCCcc
Q 036216          165 ISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLS--VFLVGANKLTLKVKRDWIPPFQLI  242 (695)
Q Consensus       165 ~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~--~L~l~~n~l~~~~~~~~~~~~~L~  242 (695)
                             .+..+++|++|++++|.++              .+++..|+.+++|+  .+++++|.+.+..+..+.. ..++
T Consensus       148 -------~~~~l~~L~~L~L~~n~l~--------------~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~  205 (606)
T 3t6q_A          148 -------KGFPTEKLKVLDFQNNAIH--------------YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQ  205 (606)
T ss_dssp             -------TTCCCTTCCEEECCSSCCC--------------EECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEE
T ss_pred             -------cccCCcccCEEEcccCccc--------------ccChhhhhhhcccceeEEecCCCccCccChhHhhh-cccc
Confidence                   1222444455555544443              33333444455554  4455555554444433332 3555


Q ss_pred             EEEccCCCCCCCCCccccCCCCCCEEEcccCCCc----cccChHHhhccc--ccceeeccccccccccc-CccccCccce
Q 036216          243 ELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGIS----GTFPNRLLKSAS--QLYLLDLGHNQIHGELT-NLTKASQLSY  315 (695)
Q Consensus       243 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~----~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~-~~~~~~~L~~  315 (695)
                      ++++++|.   ..+..+..+.++....+.-....    ..++...+..+.  +++.+++++|.+.+..+ .+..+++|++
T Consensus       206 ~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  282 (606)
T 3t6q_A          206 SLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQE  282 (606)
T ss_dssp             EEECTTCS---CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSE
T ss_pred             ccccCCch---hHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCE
Confidence            55555553   22233333333322222211110    123333333333  67788888887776655 3666778888


Q ss_pred             EecccccceeecCCC---CCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCc-cccCCCCCCEEeC
Q 036216          316 LSLIANNFSGSLPLI---SSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPD-CWMSYQNLMALDL  391 (695)
Q Consensus       316 L~l~~n~~~~~~~~~---~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~~L~~L~l  391 (695)
                      |++++|.+.. +|..   +++|++|++++|.+.+..+.    .+..+++|+.|++++|.+.+.++. .+..+++|++|++
T Consensus       283 L~l~~n~l~~-lp~~l~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l  357 (606)
T 3t6q_A          283 LDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQI----SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDL  357 (606)
T ss_dssp             EECTTSCCSC-CCSSCCSCTTCCEEECTTCCCSBGGGG----CGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEEC
T ss_pred             EeccCCccCC-CChhhcccccCCEEECccCCcCcCchh----hhhccCcCCEEECCCCCcccccchhhhhccCcCCEEEC
Confidence            8888887773 3332   36788888888888754443    344689999999999998866654 5889999999999


Q ss_pred             CCCcccccC--CccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcc
Q 036216          392 SNNKFTGNL--PTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNF  469 (695)
Q Consensus       392 s~n~~~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~  469 (695)
                      ++|.+.+..  +..+..+++|++|++++|++.+..|..+..+++|++|++++|.+.+..+...+..+++|++|++++|.+
T Consensus       358 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l  437 (606)
T 3t6q_A          358 SHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL  437 (606)
T ss_dssp             CSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCC
T ss_pred             CCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCcc
Confidence            999998765  778899999999999999999888999999999999999999998777765445799999999999999


Q ss_pred             cccCCccccCCCCCCEEeCCCCcCcccC---ChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcc
Q 036216          470 DGPLPTELCDLAFLQILDLADNNLSGTI---PNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAA  546 (695)
Q Consensus       470 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~---p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  546 (695)
                      .+..|..+..+++|++|++++|++++..   +..+..+++|                                       
T Consensus       438 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L---------------------------------------  478 (606)
T 3t6q_A          438 DISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRL---------------------------------------  478 (606)
T ss_dssp             BTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTC---------------------------------------
T ss_pred             CCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCc---------------------------------------
Confidence            9888999999999999999999998622   2345554444                                       


Q ss_pred             hhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCcCCCC
Q 036216          547 DYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTF  626 (695)
Q Consensus       547 ~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~  626 (695)
                               +.|++++|++++..|..|..+++|++|+|++|++++..|+.++.+++| .|++++|++++..|..+..+++
T Consensus       479 ---------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~  548 (606)
T 3t6q_A          479 ---------EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQ  548 (606)
T ss_dssp             ---------CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHT
T ss_pred             ---------cEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCC
Confidence                     899999999999999999999999999999999999999999999999 9999999999888888999999


Q ss_pred             CCEEEcccCcCcccCCC
Q 036216          627 LNHLNLSNNYLTGKIPS  643 (695)
Q Consensus       627 L~~L~ls~N~l~~~iP~  643 (695)
                      |++|++++|++.+..+.
T Consensus       549 L~~L~l~~N~~~c~c~~  565 (606)
T 3t6q_A          549 QRTINLRQNPLDCTCSN  565 (606)
T ss_dssp             SSEEECTTCCEECSGGG
T ss_pred             CCEEeCCCCCccccCCc
Confidence            99999999999987664

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=3.8e-54  Score=479.10  Aligned_cols=533  Identities=20%  Similarity=0.154  Sum_probs=410.9

Q ss_pred             CcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCC
Q 036216            5 LVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLP   84 (695)
Q Consensus         5 L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~   84 (695)
                      -++++++++.++.+|...   .+++++|++++|.+++. .+..|.++++|++|++++|.+++..|.+|.++++|++|+++
T Consensus        13 ~~~~~c~~~~l~~ip~~~---~~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls   88 (606)
T 3vq2_A           13 NITYQCMDQKLSKVPDDI---PSSTKNIDLSFNPLKIL-KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT   88 (606)
T ss_dssp             TTEEECTTSCCSSCCTTS---CTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CCceEccCCCcccCCCCC---CCCcCEEECCCCCcCEe-ChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECC
Confidence            357899999999998733   27899999999999875 56678899999999999999998888889999999999999


Q ss_pred             CCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCcc
Q 036216           85 FNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSS  164 (695)
Q Consensus        85 ~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~  164 (695)
                      +|.+++..|.+|+++++|++|++++|.+.+..+..++++++|++|++++|.+.+..                        
T Consensus        89 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~------------------------  144 (606)
T 3vq2_A           89 GNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCK------------------------  144 (606)
T ss_dssp             TCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCC------------------------
T ss_pred             CCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCccccee------------------------
Confidence            99999888889999999999999999998777788899999999999988876411                        


Q ss_pred             cccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCC----CEEEcccccceeecCCCCCCCCC
Q 036216          165 ISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKL----SVFLVGANKLTLKVKRDWIPPFQ  240 (695)
Q Consensus       165 ~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L----~~L~l~~n~l~~~~~~~~~~~~~  240 (695)
                          +|..++++++|++|++++|+++              .++...|+.+++|    ..+++++|.+....+..+... +
T Consensus       145 ----lp~~~~~l~~L~~L~Ls~n~l~--------------~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~  205 (606)
T 3vq2_A          145 ----LPAYFSNLTNLVHVDLSYNYIQ--------------TITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-K  205 (606)
T ss_dssp             ----CCGGGGTCTTCCEEECCSSCCC--------------EECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-E
T ss_pred             ----chHhHhhcCCCCEEEccCCcce--------------ecChhhhhhhhccccccceeeccCCCcceeCcccccCc-e
Confidence                2334455555555555555543              2222233333322    255555555554444444333 5


Q ss_pred             ccEEEccCCCCC-CCCCccccCCCCCCEEEcccCCCcc-----ccChHHhhccc--ccceeec-ccccccccccCccccC
Q 036216          241 LIELGLRSCDVG-SRFPLWLYSQKDLQFLDLFNSGISG-----TFPNRLLKSAS--QLYLLDL-GHNQIHGELTNLTKAS  311 (695)
Q Consensus       241 L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~i~~-----~~~~~~~~~l~--~L~~L~l-~~n~l~~~~~~~~~~~  311 (695)
                      |++|++++|.+. +..|.++..++.++.+++..+.+.+     .++...+..+.  .++.+++ ..+.+.+..+.+..++
T Consensus       206 L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~  285 (606)
T 3vq2_A          206 LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLA  285 (606)
T ss_dssp             EEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGT
T ss_pred             eeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCC
Confidence            666666666554 3445566666666666664433221     12222222222  3555666 5666777777777788


Q ss_pred             ccceEecccccceeecCCC--CCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEE
Q 036216          312 QLSYLSLIANNFSGSLPLI--SSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMAL  389 (695)
Q Consensus       312 ~L~~L~l~~n~~~~~~~~~--~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L  389 (695)
                      +|+.|++++|.+.. +|..  +++|+.|++++|.+ +.+|..      .+++|+.|++++|...+..  .+..+++|++|
T Consensus       286 ~L~~L~l~~~~~~~-l~~l~~~~~L~~L~l~~n~l-~~lp~~------~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L  355 (606)
T 3vq2_A          286 NVSAMSLAGVSIKY-LEDVPKHFKWQSLSIIRCQL-KQFPTL------DLPFLKSLTLTMNKGSISF--KKVALPSLSYL  355 (606)
T ss_dssp             TCSEEEEESCCCCC-CCCCCTTCCCSEEEEESCCC-SSCCCC------CCSSCCEEEEESCSSCEEC--CCCCCTTCCEE
T ss_pred             CCCEEEecCccchh-hhhccccccCCEEEcccccC-cccccC------CCCccceeeccCCcCccch--hhccCCCCCEE
Confidence            88888888888754 3322  45888999999988 555532      4889999999999655443  56789999999


Q ss_pred             eCCCCccccc--CCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCC
Q 036216          390 DLSNNKFTGN--LPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSN  467 (695)
Q Consensus       390 ~ls~n~~~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n  467 (695)
                      ++++|.+++.  .|..+..+++|++|++++|.+.+ +|..+..+++|+.|++++|.+.+..|...+..+++|++|++++|
T Consensus       356 ~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n  434 (606)
T 3vq2_A          356 DLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT  434 (606)
T ss_dssp             ECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTS
T ss_pred             ECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCC
Confidence            9999999865  47888899999999999999885 56889999999999999999977777343447999999999999


Q ss_pred             cccccCCccccCCCCCCEEeCCCCcCcc-cCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcc
Q 036216          468 NFDGPLPTELCDLAFLQILDLADNNLSG-TIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAA  546 (695)
Q Consensus       468 ~~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  546 (695)
                      ++.+..|..+..+++|++|++++|++++ .+|..+..+++|                                       
T Consensus       435 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L---------------------------------------  475 (606)
T 3vq2_A          435 NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNL---------------------------------------  475 (606)
T ss_dssp             CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC---------------------------------------
T ss_pred             CCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCC---------------------------------------
Confidence            9999899999999999999999999987 367777777666                                       


Q ss_pred             hhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCcCCC-
Q 036216          547 DYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLT-  625 (695)
Q Consensus       547 ~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~-  625 (695)
                               +.|++++|++++..|..|..+++|++|++++|++++.+|..|+.+++|+.|++++|+++ .+|..+..++ 
T Consensus       476 ---------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~  545 (606)
T 3vq2_A          476 ---------TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPK  545 (606)
T ss_dssp             ---------CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCT
T ss_pred             ---------CEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcc
Confidence                     88999999999999999999999999999999999888999999999999999999999 6888899987 


Q ss_pred             CCCEEEcccCcCcccCCCC
Q 036216          626 FLNHLNLSNNYLTGKIPSS  644 (695)
Q Consensus       626 ~L~~L~ls~N~l~~~iP~~  644 (695)
                      +|++|++++|++.+..|..
T Consensus       546 ~L~~l~l~~N~~~c~c~~~  564 (606)
T 3vq2_A          546 SLAFFNLTNNSVACICEHQ  564 (606)
T ss_dssp             TCCEEECCSCCCCCSSTTH
T ss_pred             cCcEEEccCCCcccCCccH
Confidence            5999999999999877753

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=5.2e-54  Score=477.98  Aligned_cols=516  Identities=20%  Similarity=0.130  Sum_probs=403.4

Q ss_pred             CCCcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEe
Q 036216            3 PSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLG   82 (695)
Q Consensus         3 ~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   82 (695)
                      +++++|++++|.++.+++.+|.++++|++|++++|.+.++ .|+.|.++++|++|+|++|.+.+..|..|.++++|++|+
T Consensus        33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  111 (606)
T 3t6q_A           33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI-HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF  111 (606)
T ss_dssp             TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred             CcCcEEEccCCccCcCChhHhccCccceEEECCCCcccee-ChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence            4689999999999999988999999999999999999886 788999999999999999999988899999999999999


Q ss_pred             CCCCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccc--eEEc
Q 036216           83 LPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLE--SLAL  160 (695)
Q Consensus        83 L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~--~L~L  160 (695)
                      +++|.+++..|..|+++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+.    .++.+.. ++  .|++
T Consensus       112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~-L~~l~L~l  186 (606)
T 3t6q_A          112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE----DMSSLQQ-ATNLSLNL  186 (606)
T ss_dssp             CTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHH----HHHTTTT-CCSEEEEC
T ss_pred             ccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChh----hhhhhcc-cceeEEec
Confidence            999999987788899999999999999999975545555699999999999999887776    4555665 87  8999


Q ss_pred             cCcccccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceee-----cCCCC
Q 036216          161 ASSSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLK-----VKRDW  235 (695)
Q Consensus       161 ~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~  235 (695)
                      ++|.+.+..+..+.. ..|++|++++|..                ++. .+.++..+....+....+...     ....+
T Consensus       187 ~~n~l~~~~~~~~~~-~~L~~L~l~~~~~----------------~~~-~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~  248 (606)
T 3t6q_A          187 NGNDIAGIEPGAFDS-AVFQSLNFGGTQN----------------LLV-IFKGLKNSTIQSLWLGTFEDMDDEDISPAVF  248 (606)
T ss_dssp             TTCCCCEECTTTTTT-CEEEEEECTTCSC----------------HHH-HHHHTTTCEEEEEECCCCTTSCCCCCCGGGG
T ss_pred             CCCccCccChhHhhh-ccccccccCCchh----------------HHH-HhhhccccchhheechhhccccccccChhHh
Confidence            999999987776654 6899999998762                121 445555555444433222111     11111


Q ss_pred             CCCC--CccEEEccCCCCCCCCCccccCCCCCCEEEcccCCCccccChHHhhcccccceeeccccccccccc-CccccCc
Q 036216          236 IPPF--QLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELT-NLTKASQ  312 (695)
Q Consensus       236 ~~~~--~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~  312 (695)
                      ..+.  +++.+++++|.+.+..+..+..+++|++|++++|.+. .+|..+ ..+++|++|++++|.+.+..+ .+..++ 
T Consensus       249 ~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~l~-  325 (606)
T 3t6q_A          249 EGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGL-VGLSTLKKLVLSANKFENLCQISASNFP-  325 (606)
T ss_dssp             GGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSC-CSCTTCCEEECTTCCCSBGGGGCGGGCT-
T ss_pred             chhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhh-cccccCCEEECccCCcCcCchhhhhccC-
Confidence            1111  4566666666666555555666666666666666655 555442 445556666666665554433 344444 


Q ss_pred             cceEecccccceeecCCCCCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCC--CccccCCCCCCEEe
Q 036216          313 LSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKL--PDCWMSYQNLMALD  390 (695)
Q Consensus       313 L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L~  390 (695)
                                          +|+.|++++|.+.+.++..   .+..+++|++|++++|.+.+..  +..+..+++|++|+
T Consensus       326 --------------------~L~~L~l~~n~~~~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~  382 (606)
T 3t6q_A          326 --------------------SLTHLSIKGNTKRLELGTG---CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLN  382 (606)
T ss_dssp             --------------------TCSEEECCSCSSCCBCCSS---TTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEE
T ss_pred             --------------------cCCEEECCCCCcccccchh---hhhccCcCCEEECCCCccccccCcchhcccCCCCCEEE
Confidence                                4555555555554333321   2335778888888888887655  66788899999999


Q ss_pred             CCCCcccccCCccccCCCCCcEEECcCCcceeeCCc-cccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcc
Q 036216          391 LSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPI-LLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNF  469 (695)
Q Consensus       391 ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~  469 (695)
                      +++|.+.+..|..|..+++|++|++++|++.+..+. .+..+++|++|++++|.+.+..|..+. .+++|++|++++|++
T Consensus       383 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l  461 (606)
T 3t6q_A          383 LSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD-GLPALQHLNLQGNHF  461 (606)
T ss_dssp             CCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTT-TCTTCCEEECTTCBC
T ss_pred             CCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHh-CCCCCCEEECCCCCC
Confidence            999999888888899999999999999999876654 488899999999999999777776665 699999999999998


Q ss_pred             ccc---CCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcc
Q 036216          470 DGP---LPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAA  546 (695)
Q Consensus       470 ~~~---~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  546 (695)
                      .+.   .+..+..+++|++|++++|++++..|..|..+++|                                       
T Consensus       462 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L---------------------------------------  502 (606)
T 3t6q_A          462 PKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMM---------------------------------------  502 (606)
T ss_dssp             GGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTC---------------------------------------
T ss_pred             CccccccchhhccCCCccEEECCCCccCccChhhhccccCC---------------------------------------
Confidence            862   34678899999999999999998888888877766                                       


Q ss_pred             hhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCC
Q 036216          547 DYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIP  618 (695)
Q Consensus       547 ~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p  618 (695)
                               +.|++++|++++..|..+.+++.| +|++++|++++..|+.++.+++|+.|++++|.+.+..+
T Consensus       503 ---------~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          503 ---------NHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             ---------CEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             ---------CEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence                     889999999999999999999999 99999999998888889999999999999999986444

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.9e-53  Score=473.42  Aligned_cols=523  Identities=20%  Similarity=0.179  Sum_probs=400.2

Q ss_pred             CCCcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEe
Q 036216            3 PSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLG   82 (695)
Q Consensus         3 ~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   82 (695)
                      +++++|++++|.++++++..|.++++|++|++++|.++++ .|.+|.++++|++|+|++|.+++..|+.|.++++|++|+
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  110 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETI-EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV  110 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred             CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccccc-CHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence            5799999999999999999999999999999999999985 678899999999999999999988899999999999999


Q ss_pred             CCCCCCCCCchhhhcCCCCCCEEEcccCcCCc-ccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEcc
Q 036216           83 LPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEG-RIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALA  161 (695)
Q Consensus        83 L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~  161 (695)
                      +++|.+++..+..|+++++|++|++++|.+.+ .+|..++++++|++|++++|++.+..+..+.. +..+...+++++++
T Consensus       111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~~l~~L~l~  189 (606)
T 3vq2_A          111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF-LRENPQVNLSLDMS  189 (606)
T ss_dssp             CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHH-HHHCTTCCCEEECT
T ss_pred             ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhh-hhccccccceeecc
Confidence            99999998777889999999999999999986 56999999999999999999999877763321 22222225589999


Q ss_pred             CcccccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCCCCc
Q 036216          162 SSSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQL  241 (695)
Q Consensus       162 ~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L  241 (695)
                      +|.+++..+..+... +|++|++++|.+.             +...+..+.+++.++.+.+..+.+.....-...     
T Consensus       190 ~n~l~~~~~~~~~~~-~L~~L~L~~n~~~-------------~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~-----  250 (606)
T 3vq2_A          190 LNPIDFIQDQAFQGI-KLHELTLRGNFNS-------------SNIMKTCLQNLAGLHVHRLILGEFKDERNLEIF-----  250 (606)
T ss_dssp             TCCCCEECTTTTTTC-EEEEEEEESCCSC-------------HHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC-----
T ss_pred             CCCcceeCcccccCc-eeeeeeccCCccc-------------hhHHHHHhccccccccccccccccccCCccccc-----
Confidence            999998777766655 8999999999875             334445789999999988876544321110000     


Q ss_pred             cEEEccCCCCCCCCCccccCCCCCCEEEc-ccCCCccccChHHhhcccccceeecccccccccccCccccCccceEeccc
Q 036216          242 IELGLRSCDVGSRFPLWLYSQKDLQFLDL-FNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIA  320 (695)
Q Consensus       242 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l-~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~  320 (695)
                                ....+..+..+ .++.+++ ..+.+.+.+|.  +..+++|+.+++++|.+.. ++.+..+++|++|++++
T Consensus       251 ----------~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~-l~~l~~~~~L~~L~l~~  316 (606)
T 3vq2_A          251 ----------EPSIMEGLCDV-TIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSIKY-LEDVPKHFKWQSLSIIR  316 (606)
T ss_dssp             ----------CGGGGTTGGGS-EEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCCCC-CCCCCTTCCCSEEEEES
T ss_pred             ----------ChHHhhhhhhc-cHhheeccccccccccccc--cccCCCCCEEEecCccchh-hhhccccccCCEEEccc
Confidence                      00000001111 2333333 33334333333  3444455555555554432 22444444555555555


Q ss_pred             ccceeecCC-CCCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCC--CCccccCCCCCCEEeCCCCccc
Q 036216          321 NNFSGSLPL-ISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGK--LPDCWMSYQNLMALDLSNNKFT  397 (695)
Q Consensus       321 n~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~~~L~~L~ls~n~~~  397 (695)
                      |.+ +.+|. .+++|+.|++++|...+.+      .+..+++|++|++++|.+++.  .+..+..+++|++|++++|.+.
T Consensus       317 n~l-~~lp~~~l~~L~~L~l~~n~~~~~~------~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~  389 (606)
T 3vq2_A          317 CQL-KQFPTLDLPFLKSLTLTMNKGSISF------KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI  389 (606)
T ss_dssp             CCC-SSCCCCCCSSCCEEEEESCSSCEEC------CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE
T ss_pred             ccC-cccccCCCCccceeeccCCcCccch------hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc
Confidence            554 22332 2345556666555433222      233577888888888887755  3677888899999999999988


Q ss_pred             ccCCccccCCCCCcEEECcCCcceeeCC-ccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcccc-cCCc
Q 036216          398 GNLPTSLGSLSSLVSLHLRKNRLSGTIP-ILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDG-PLPT  475 (695)
Q Consensus       398 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~  475 (695)
                      + +|..+..+++|++|++++|++.+..| ..+..+++|++|++++|.+.+..|..+. .+++|++|++++|++.+ .+|.
T Consensus       390 ~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~  467 (606)
T 3vq2_A          390 I-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL-GLTSLNTLKMAGNSFKDNTLSN  467 (606)
T ss_dssp             E-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTT-TCTTCCEEECTTCEEGGGEECS
T ss_pred             c-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhc-CCCCCCEEECCCCcCCCcchHH
Confidence            5 55788889999999999999987776 6788899999999999998877777765 78999999999999987 4788


Q ss_pred             cccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccc
Q 036216          476 ELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLV  555 (695)
Q Consensus       476 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  555 (695)
                      .+..+++|++|++++|++++..|..+..+++|                                                
T Consensus       468 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L------------------------------------------------  499 (606)
T 3vq2_A          468 VFANTTNLTFLDLSKCQLEQISWGVFDTLHRL------------------------------------------------  499 (606)
T ss_dssp             CCTTCTTCCEEECTTSCCCEECTTTTTTCTTC------------------------------------------------
T ss_pred             hhccCCCCCEEECCCCcCCccChhhhcccccC------------------------------------------------
Confidence            89999999999999999998888888877766                                                


Q ss_pred             cEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcC-CCCEEECCCCcccccCC
Q 036216          556 RIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMR-SLESIDFSVNKFTGEIP  618 (695)
Q Consensus       556 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~Ls~n~l~~~~p  618 (695)
                      +.|++++|++++..|..|..+++|++|++++|+++ .+|..+..++ +|+.|++++|.+.+..+
T Consensus       500 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          500 QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE  562 (606)
T ss_dssp             CEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred             CEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence            88999999999988999999999999999999999 6777799887 69999999999986444

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.9e-51  Score=471.83  Aligned_cols=551  Identities=22%  Similarity=0.219  Sum_probs=361.8

Q ss_pred             cEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcc-cCCccCCCCCCCCEEeCC
Q 036216            6 VELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQG-PIPEGLQNLTSLKHLGLP   84 (695)
Q Consensus         6 ~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~   84 (695)
                      +..+.++++++.+|.    ..+++++|||++|.|+.. .|..|.++++|++|+|++|...+ +.|.+|.++++|++|+|+
T Consensus         7 ~~~dcs~~~L~~vP~----lp~~l~~LdLs~N~i~~i-~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls   81 (844)
T 3j0a_A            7 RIAFYRFCNLTQVPQ----VLNTTERLLLSFNYIRTV-TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG   81 (844)
T ss_dssp             EEEEESCCCSSCCCS----SCTTCCEEEEESCCCCEE-CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred             eEEEccCCCCCCCCC----CCCCcCEEECCCCcCCcc-ChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence            468899999999986    457899999999999886 67889999999999999995544 448899999999999999


Q ss_pred             CCCCCCCchhhhcCCCCCCEEEcccCcCCcccchh--hcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccC
Q 036216           85 FNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRS--MARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALAS  162 (695)
Q Consensus        85 ~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~  162 (695)
                      +|.+++..|.+|+++++|++|++++|.+.+..|..  ++++++|++|++++|.+.+..+..   .++.+++ |++|++++
T Consensus        82 ~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~---~~~~L~~-L~~L~Ls~  157 (844)
T 3j0a_A           82 SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHP---SFGKLNS-LKSIDFSS  157 (844)
T ss_dssp             TCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCG---GGGTCSS-CCEEEEES
T ss_pred             CCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccch---hHhhCCC-CCEEECCC
Confidence            99999888999999999999999999998766655  889999999999999886643210   2333333 44444444


Q ss_pred             cccccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCCCC--
Q 036216          163 SSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQ--  240 (695)
Q Consensus       163 n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~--  240 (695)
                      |.+.+..+..+..+                                   . .++|+.|++++|.+.+..+..+..+.+  
T Consensus       158 N~i~~~~~~~l~~l-----------------------------------~-~~~L~~L~L~~n~l~~~~~~~~~~~~~~~  201 (844)
T 3j0a_A          158 NQIFLVCEHELEPL-----------------------------------Q-GKTLSFFSLAANSLYSRVSVDWGKCMNPF  201 (844)
T ss_dssp             SCCCCCCSGGGHHH-----------------------------------H-HCSSCCCEECCSBSCCCCCCCCCSSSCTT
T ss_pred             CcCCeeCHHHcccc-----------------------------------c-CCccceEECCCCccccccccchhhcCCcc
Confidence            44444444444433                                   0 044444455544444444433333332  


Q ss_pred             ----ccEEEccCCCCCCCCCccccCC---CCCCEEEcccCCCcc--------ccChHHhhc--ccccceeeccccccccc
Q 036216          241 ----LIELGLRSCDVGSRFPLWLYSQ---KDLQFLDLFNSGISG--------TFPNRLLKS--ASQLYLLDLGHNQIHGE  303 (695)
Q Consensus       241 ----L~~L~l~~~~~~~~~~~~l~~~---~~L~~L~l~~~~i~~--------~~~~~~~~~--l~~L~~L~l~~n~l~~~  303 (695)
                          |+.|++++|.+.+..+..+...   ..++.+.++.+....        ......+..  .++|+.|++++|.+.+.
T Consensus       202 ~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~  281 (844)
T 3j0a_A          202 RNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSL  281 (844)
T ss_dssp             TTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEE
T ss_pred             ccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCccccc
Confidence                5555555555554444443322   345555554222110        111111222  25677777777776655


Q ss_pred             cc-CccccCccceEecccccceeecCCC---CCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCcc
Q 036216          304 LT-NLTKASQLSYLSLIANNFSGSLPLI---SSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDC  379 (695)
Q Consensus       304 ~~-~~~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  379 (695)
                      .+ .+..+++|+.|++++|.+.+..+..   +++|+.|++++|.+++..+.    .+..+++|+.|++++|.+.+..+..
T Consensus       282 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~L~~N~i~~~~~~~  357 (844)
T 3j0a_A          282 NSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSS----NFYGLPKVAYIDLQKNHIAIIQDQT  357 (844)
T ss_dssp             CSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSC----SCSSCTTCCEEECCSCCCCCCCSSC
T ss_pred             ChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHH----HhcCCCCCCEEECCCCCCCccChhh
Confidence            44 4555666777777777666655543   34666666666666544333    2334667777777777776666666


Q ss_pred             ccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCC
Q 036216          380 WMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRM  459 (695)
Q Consensus       380 ~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L  459 (695)
                      |..+++|++|++++|.+++ +    ..+++|+.|++++|++. .+|..   ..+++.|++++|.+.+.-...+...+++|
T Consensus       358 ~~~l~~L~~L~Ls~N~l~~-i----~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L  428 (844)
T 3j0a_A          358 FKFLEKLQTLDLRDNALTT-I----HFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHL  428 (844)
T ss_dssp             SCSCCCCCEEEEETCCSCC-C----SSCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTC
T ss_pred             hcCCCCCCEEECCCCCCCc-c----cCCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCcc
Confidence            7777777777777777663 2    22566777777777766 33332   45677777777776443222233356777


Q ss_pred             cEEEcCCCcccccCCc-cccCCCCCCEEeCCCCcCcccC-----ChhhhhcccCcccCCCCCCcccccCCCCCCCCCCcc
Q 036216          460 VLLILRSNNFDGPLPT-ELCDLAFLQILDLADNNLSGTI-----PNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTV  533 (695)
Q Consensus       460 ~~L~l~~n~~~~~~~~-~l~~l~~L~~L~L~~n~l~~~~-----p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~  533 (695)
                      +.|++++|++++..+. .+..+++|+.|++++|.+++..     +..|.                               
T Consensus       429 ~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~-------------------------------  477 (844)
T 3j0a_A          429 QILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFE-------------------------------  477 (844)
T ss_dssp             CEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSS-------------------------------
T ss_pred             ceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhc-------------------------------
Confidence            7777777777654332 3455677777777777765221     22222                               


Q ss_pred             ccceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcc
Q 036216          534 TEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKF  613 (695)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l  613 (695)
                                       .++.|+.|+|++|++++..|..|..+++|++|+|++|++++..|..+.  ++|+.|+|++|++
T Consensus       478 -----------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l  538 (844)
T 3j0a_A          478 -----------------GLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQL  538 (844)
T ss_dssp             -----------------CBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECC
T ss_pred             -----------------CcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcC
Confidence                             234458889999999988888899999999999999999977666665  8999999999999


Q ss_pred             cccCCcCCcCCCCCCEEEcccCcCcccCCCCcccCccccccccCC-cccCCCCCCCCCC
Q 036216          614 TGEIPQSMSSLTFLNHLNLSNNYLTGKIPSSTQLQSFNASCFLGN-NLCGAPLPKNCTD  671 (695)
Q Consensus       614 ~~~~p~~l~~l~~L~~L~ls~N~l~~~iP~~~~~~~~~~~~~~~n-~l~~~~~~~~c~~  671 (695)
                      ++..|+.+.   +|+.|++++|++.+..+-..    |..-...++ .++|.+....|..
T Consensus       539 ~~~~~~~~~---~L~~l~l~~Np~~C~c~~~~----f~~~~~~~~~~~~~~~~~~~C~~  590 (844)
T 3j0a_A          539 LAPNPDVFV---SLSVLDITHNKFICECELST----FINWLNHTNVTIAGPPADIYCVY  590 (844)
T ss_dssp             CCCCSCCCS---SCCEEEEEEECCCCSSSCCS----HHHHHHHTTTTTCCCGGGCCCSS
T ss_pred             CCCChhHhC---CcCEEEecCCCcccccccHH----HHHHHHhcCcccccccccCccCC
Confidence            988887764   78899999999987665321    111111223 4566655556654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=7.3e-50  Score=458.77  Aligned_cols=523  Identities=20%  Similarity=0.196  Sum_probs=395.8

Q ss_pred             CEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCCCCCCCc-hhhhcCCCCCCEEEcc
Q 036216           30 TTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSV-PKWFDRLTHLEHLSLS  108 (695)
Q Consensus        30 ~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~Ls  108 (695)
                      +..+.+++.++.  +|.   -.++|++|+|++|.+++..|..|.++++|++|++++|...+.+ |.+|+++++|++|+|+
T Consensus         7 ~~~dcs~~~L~~--vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls   81 (844)
T 3j0a_A            7 RIAFYRFCNLTQ--VPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG   81 (844)
T ss_dssp             EEEEESCCCSSC--CCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred             eEEEccCCCCCC--CCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence            467888888887  676   4678999999999999888999999999999999999655444 7889999999999999


Q ss_pred             cCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCcccccccchhcCCCCCCCEEEccCCC
Q 036216          109 YNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLDLSNNS  188 (695)
Q Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~  188 (695)
                      +|.+.+..|..|+++++|++|++++|.+.+..+.                           ...++++++|++|++++|.
T Consensus        82 ~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~---------------------------~~~~~~L~~L~~L~Ls~N~  134 (844)
T 3j0a_A           82 SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLK---------------------------DGYFRNLKALTRLDLSKNQ  134 (844)
T ss_dssp             TCCCCEECTTSSCSCSSCCCEECTTCCCSSCCST---------------------------TCCCSSCSSCCEEEEESCC
T ss_pred             CCcCcccCHhHccCCcccCEeeCcCCCCCccccc---------------------------CccccccCCCCEEECCCCc
Confidence            9999988899999999999999999887653322                           1237788889999999888


Q ss_pred             cCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCC--CCccEEEccCCCCCCCCCccccCCCC--
Q 036216          189 IVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPP--FQLIELGLRSCDVGSRFPLWLYSQKD--  264 (695)
Q Consensus       189 i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~l~~~~~--  264 (695)
                      +++             ..+...|+++++|+.|++++|.+.+..+..+..+  ++|+.|++++|.+.+..|..+..+++  
T Consensus       135 l~~-------------~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~  201 (844)
T 3j0a_A          135 IRS-------------LYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPF  201 (844)
T ss_dssp             CCC-------------CCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTT
T ss_pred             ccc-------------cccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCcc
Confidence            762             2233468899999999999999888888888776  89999999999999888877776665  


Q ss_pred             ----CCEEEcccCCCccccChHHhhcc--cccceeeccccccccc---------cc-Cccc--cCccceEecccccceee
Q 036216          265 ----LQFLDLFNSGISGTFPNRLLKSA--SQLYLLDLGHNQIHGE---------LT-NLTK--ASQLSYLSLIANNFSGS  326 (695)
Q Consensus       265 ----L~~L~l~~~~i~~~~~~~~~~~l--~~L~~L~l~~n~l~~~---------~~-~~~~--~~~L~~L~l~~n~~~~~  326 (695)
                          |+.|++++|.+.+.++..+....  .+++.+.++.+.....         .. .+..  .++|++|++++|.+.+.
T Consensus       202 ~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~  281 (844)
T 3j0a_A          202 RNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSL  281 (844)
T ss_dssp             TTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEE
T ss_pred             ccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCccccc
Confidence                99999999999888877665433  5677787774433211         11 2222  25678888888877766


Q ss_pred             cCCC---CCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeCCCCcccccCCcc
Q 036216          327 LPLI---SSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTS  403 (695)
Q Consensus       327 ~~~~---~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~  403 (695)
                      .+..   +++|+.|++++|.+++..+.    .|..+++|+.|++++|.+++..|..|..+++|+.|++++|.+.+..+..
T Consensus       282 ~~~~~~~l~~L~~L~L~~n~i~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~  357 (844)
T 3j0a_A          282 NSRVFETLKDLKVLNLAYNKINKIADE----AFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQT  357 (844)
T ss_dssp             CSCCSSSCCCCCEEEEESCCCCEECTT----TTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSC
T ss_pred             ChhhhhcCCCCCEEECCCCcCCCCChH----HhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhh
Confidence            5544   35777778877777654443    3345777777888877777666777777777888888877777666667


Q ss_pred             ccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcccccC-CccccCCCC
Q 036216          404 LGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPL-PTELCDLAF  482 (695)
Q Consensus       404 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~l~~l~~  482 (695)
                      |..+++|++|++++|.+++.     ..+++|+.|++++|.+. .+|.    ...+++.|++++|++.+.. +..+..+++
T Consensus       358 ~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~~----~~~~l~~L~ls~N~l~~l~~~~~~~~l~~  427 (844)
T 3j0a_A          358 FKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-TLPK----INLTANLIHLSENRLENLDILYFLLRVPH  427 (844)
T ss_dssp             SCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-CCCC----CCTTCCEEECCSCCCCSSTTHHHHTTCTT
T ss_pred             hcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc-cccc----cccccceeecccCccccCchhhhhhcCCc
Confidence            77777788888877777632     22677777777777773 5554    3556777777777776532 223457777


Q ss_pred             CCEEeCCCCcCcccCCh-hhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcC
Q 036216          483 LQILDLADNNLSGTIPN-CIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFS  561 (695)
Q Consensus       483 L~~L~L~~n~l~~~~p~-~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls  561 (695)
                      |++|++++|++++..+. .+..                                                .+.|+.|+++
T Consensus       428 L~~L~Ls~N~l~~~~~~~~~~~------------------------------------------------~~~L~~L~Ls  459 (844)
T 3j0a_A          428 LQILILNQNRFSSCSGDQTPSE------------------------------------------------NPSLEQLFLG  459 (844)
T ss_dssp             CCEEEEESCCCCCCCSSSSSCS------------------------------------------------CTTCCBCEEE
T ss_pred             cceeeCCCCccccccccccccc------------------------------------------------CCccccccCC
Confidence            88888888777643322 1111                                                2345889999


Q ss_pred             Ccccc-----ccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEEcccCc
Q 036216          562 KNLFS-----GTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNY  636 (695)
Q Consensus       562 ~n~l~-----~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~  636 (695)
                      +|.++     +..+..|.++++|++|+|++|.+++..|..|+.+++|+.|+|++|++++..|..+.  ++|+.|++++|+
T Consensus       460 ~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~  537 (844)
T 3j0a_A          460 ENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQ  537 (844)
T ss_dssp             SCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEEC
T ss_pred             CCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCc
Confidence            99997     44456789999999999999999999999999999999999999999987777666  899999999999


Q ss_pred             CcccCCCCcccCccccccccCC-cccCC
Q 036216          637 LTGKIPSSTQLQSFNASCFLGN-NLCGA  663 (695)
Q Consensus       637 l~~~iP~~~~~~~~~~~~~~~n-~l~~~  663 (695)
                      +++.+|..  +..+....+.|| ..|..
T Consensus       538 l~~~~~~~--~~~L~~l~l~~Np~~C~c  563 (844)
T 3j0a_A          538 LLAPNPDV--FVSLSVLDITHNKFICEC  563 (844)
T ss_dssp             CCCCCSCC--CSSCCEEEEEEECCCCSS
T ss_pred             CCCCChhH--hCCcCEEEecCCCccccc
Confidence            99999975  446666666666 34533

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.3e-49  Score=436.39  Aligned_cols=500  Identities=20%  Similarity=0.174  Sum_probs=296.5

Q ss_pred             CCcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeC
Q 036216            4 SLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGL   83 (695)
Q Consensus         4 ~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L   83 (695)
                      ++++|++++|.++.+++.+|.++++|++|++++|.+++. .++.|.++++|++|++++|.++...|.+|.++++|++|++
T Consensus        29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (570)
T 2z63_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (570)
T ss_dssp             SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCcc-CcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence            456666666666666655666666666666666666553 3445556666666666666666555566666666666666


Q ss_pred             CCCCCCCCchhhhcCCCCCCEEEcccCcCCc-ccchhhcCCCCCCEEEccCCcCccccchhhhhhhccccccc----ceE
Q 036216           84 PFNHFSSSVPKWFDRLTHLEHLSLSYNSLEG-RIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGL----ESL  158 (695)
Q Consensus        84 ~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L----~~L  158 (695)
                      ++|.+++..+..|+++++|++|++++|.+.+ .+|..++++++|++|++++|++.+..+.    .++.+.. +    +.+
T Consensus       108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~-L~~~~~~L  182 (570)
T 2z63_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT----DLRVLHQ-MPLLNLSL  182 (570)
T ss_dssp             TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGG----GGHHHHT-CTTCCCEE
T ss_pred             cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHH----Hccchhc-cchhhhhc
Confidence            6666664444346666666666666666654 2456666666666666666666554444    2222222 3    556


Q ss_pred             EccCcccccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCC
Q 036216          159 ALASSSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPP  238 (695)
Q Consensus       159 ~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~  238 (695)
                      ++++|.+.+..+..+... +|++|++++|....            ..+ +..+.+++.++...+....+..        .
T Consensus       183 ~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~------------~~~-~~~~~~l~~l~~~~l~~~~~~~--------~  240 (570)
T 2z63_A          183 DLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSL------------NVM-KTCIQGLAGLEVHRLVLGEFRN--------E  240 (570)
T ss_dssp             ECTTCCCCEECTTTTTTC-EEEEEEEESCCSCT------------THH-HHHHHTTTTCEEEEEEEEECCC--------C
T ss_pred             ccCCCCceecCHHHhccC-cceeEecccccccc------------cch-hhhhcCccccceeeeccccccC--------c
Confidence            666666666555555444 56666666553321            011 1244555555554443322110        0


Q ss_pred             CCccEEEccCCCCCCCCCccccCCC--CCCEEEcccC-CCccccChHHhhcccccceeecccccccccccCccccCccce
Q 036216          239 FQLIELGLRSCDVGSRFPLWLYSQK--DLQFLDLFNS-GISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSY  315 (695)
Q Consensus       239 ~~L~~L~l~~~~~~~~~~~~l~~~~--~L~~L~l~~~-~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~  315 (695)
                      ..++.          .....+..++  .++.++++++ .+.+.++. .+..+++|+.|++++|.+.+....+..+ +|++
T Consensus       241 ~~l~~----------~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~  308 (570)
T 2z63_A          241 GNLEK----------FDKSALEGLCNLTIEEFRLAYLDYYLDDIID-LFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQH  308 (570)
T ss_dssp             SSCEE----------CCTTTTGGGGGSEEEEEEEEETTEEESCSTT-TTGGGTTCSEEEEESCEECSCCBCCSCC-CCSE
T ss_pred             hhhhh----------cchhhhccccccchhhhhhhcchhhhhhchh-hhcCcCcccEEEecCccchhhhhhhccC-CccE
Confidence            01110          0011112222  2456666666 44444443 3466788888888888777444344333 4555


Q ss_pred             EecccccceeecCCCCCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeCCCCc
Q 036216          316 LSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNK  395 (695)
Q Consensus       316 L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~  395 (695)
                      |++++|.+.. +|                     .      ..+++|+.|++++|.+.+..+.  ..+++|++|++++|.
T Consensus       309 L~l~~n~~~~-l~---------------------~------~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~  358 (570)
T 2z63_A          309 LELVNCKFGQ-FP---------------------T------LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNG  358 (570)
T ss_dssp             EEEESCBCSS-CC---------------------B------CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSC
T ss_pred             EeeccCcccc-cC---------------------c------ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCc
Confidence            5544444331 11                     0      0134445555555544433332  445566666666666


Q ss_pred             ccccC--CccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcccccC
Q 036216          396 FTGNL--PTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPL  473 (695)
Q Consensus       396 ~~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  473 (695)
                      +++..  +..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+                         .+..
T Consensus       359 l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l-------------------------~~~~  412 (570)
T 2z63_A          359 LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNL-------------------------KQMS  412 (570)
T ss_dssp             CBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEE-------------------------ESCT
T ss_pred             cCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCcc-------------------------cccc
Confidence            55332  34455555555555555555533332 44555555555555544                         4333


Q ss_pred             C-ccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhc
Q 036216          474 P-TELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEIL  552 (695)
Q Consensus       474 ~-~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  552 (695)
                      + ..+..+++|++|++++|++.+..|..+.++++|                                             
T Consensus       413 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L---------------------------------------------  447 (570)
T 2z63_A          413 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL---------------------------------------------  447 (570)
T ss_dssp             TSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC---------------------------------------------
T ss_pred             chhhhhcCCCCCEEeCcCCcccccchhhhhcCCcC---------------------------------------------
Confidence            3 345566667777777777666666666555554                                             


Q ss_pred             ccccEEEcCCcccc-ccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEE
Q 036216          553 NLVRIIDFSKNLFS-GTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLN  631 (695)
Q Consensus       553 ~~l~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  631 (695)
                         +.|++++|.++ +.+|..+..+++|++|++++|++++..|..|+.+++|+.|++++|++++..|..+..+++|++|+
T Consensus       448 ---~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  524 (570)
T 2z63_A          448 ---EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIW  524 (570)
T ss_dssp             ---CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred             ---cEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEE
Confidence               66677777776 46788889999999999999999988899999999999999999999988888899999999999


Q ss_pred             cccCcCcccCCCCccc
Q 036216          632 LSNNYLTGKIPSSTQL  647 (695)
Q Consensus       632 ls~N~l~~~iP~~~~~  647 (695)
                      +++|++++.+|....+
T Consensus       525 l~~N~~~~~~~~~~~~  540 (570)
T 2z63_A          525 LHTNPWDCSCPRIDYL  540 (570)
T ss_dssp             CCSSCBCCCTTTTHHH
T ss_pred             ecCCcccCCCcchHHH
Confidence            9999999999976444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=9e-48  Score=422.61  Aligned_cols=507  Identities=19%  Similarity=0.200  Sum_probs=368.3

Q ss_pred             CCCCcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEE
Q 036216            2 LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHL   81 (695)
Q Consensus         2 l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   81 (695)
                      |+...+.+++++.++.+|...+   ++|++|++++|.+++. .|..+.++++|++|++++|++++..|++|.++++|++|
T Consensus         4 C~~~~~c~~~~~~l~~ip~~~~---~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   79 (549)
T 2z81_A            4 CDASGVCDGRSRSFTSIPSGLT---AAMKSLDLSFNKITYI-GHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHL   79 (549)
T ss_dssp             ECTTSEEECTTSCCSSCCSCCC---TTCCEEECCSSCCCEE-CSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCceEECCCCccccccccCC---CCccEEECcCCccCcc-ChhhhhcCCcccEEECCCCCcCccChhhccccccCCEE
Confidence            3555668899999999998433   7899999999999885 67889999999999999999998888999999999999


Q ss_pred             eCCCCCCCCCchhhhcCCCCCCEEEcccCcCCc-ccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEc
Q 036216           82 GLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEG-RIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLAL  160 (695)
Q Consensus        82 ~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L  160 (695)
                      ++++|.+++..|..|+++++|++|++++|.+++ ..|..++++++|++|++++|.+.+.++..   .++.+.. |++|++
T Consensus        80 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~---~~~~l~~-L~~L~L  155 (549)
T 2z81_A           80 DLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI---DFAGLTS-LNELEI  155 (549)
T ss_dssp             ECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT---TTTTCCE-EEEEEE
T ss_pred             ECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHh---hhhcccc-cCeeec
Confidence            999999998888889999999999999999986 35678999999999999999854444321   4555666 999999


Q ss_pred             cCcccccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCCCC
Q 036216          161 ASSSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQ  240 (695)
Q Consensus       161 ~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~  240 (695)
                      ++|.+.+..|..++.+++|++|++++|.+.              .++...+..+++|+.|++++|.+.+.....      
T Consensus       156 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~--------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~------  215 (549)
T 2z81_A          156 KALSLRNYQSQSLKSIRDIHHLTLHLSESA--------------FLLEIFADILSSVRYLELRDTNLARFQFSP------  215 (549)
T ss_dssp             EETTCCEECTTTTTTCSEEEEEEEECSBST--------------THHHHHHHSTTTBSEEEEESCBCTTCCCCC------
T ss_pred             cCCcccccChhhhhccccCceEecccCccc--------------ccchhhHhhcccccEEEccCCccccccccc------
Confidence            999999988999999999999999998874              556655677888888888888776421100      


Q ss_pred             ccEEEccCCCCCCCCCccccCCCCCCEEEcccCCCccccChHHh---hcccccceeecccccccccccCccccCccceEe
Q 036216          241 LIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLL---KSASQLYLLDLGHNQIHGELTNLTKASQLSYLS  317 (695)
Q Consensus       241 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~  317 (695)
                                     ......+++|+.|++++|.+.+..+..+.   ..+++|+.+++++|.+.+... +...       
T Consensus       216 ---------------~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~-------  272 (549)
T 2z81_A          216 ---------------LPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGD-FNPS-------  272 (549)
T ss_dssp             ---------------CSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSC-CCCC-------
T ss_pred             ---------------cchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccccc-cccc-------
Confidence                           01123456777777777777654444332   334566666666666553211 0000       


Q ss_pred             cccccceeecCCCCCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeCCCCccc
Q 036216          318 LIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFT  397 (695)
Q Consensus       318 l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~  397 (695)
                            .......+++++.+++.++.+.....                       ....+..+...++|++|++++|.+.
T Consensus       273 ------~~~~~~~l~~L~~L~l~~~~i~~~~~-----------------------~~~l~~~~~~~~~L~~L~l~~n~l~  323 (549)
T 2z81_A          273 ------ESDVVSELGKVETVTIRRLHIPQFYL-----------------------FYDLSTVYSLLEKVKRITVENSKVF  323 (549)
T ss_dssp             ------TTTCCCCCTTCCEEEEESCBCSCGGG-----------------------SCCCCHHHHHSTTCCEEEEESSCCC
T ss_pred             ------chhhhhhhcccccccccccccchhhh-----------------------cccchhhhhhcccceEEEeccCccc
Confidence                  00011123445555555554332100                       0011112233456666666666665


Q ss_pred             ccCCccc-cCCCCCcEEECcCCcceeeCC---ccccCCCCCcEEEcCCCcccccCC-hhhhhcCCCCcEEEcCCCccccc
Q 036216          398 GNLPTSL-GSLSSLVSLHLRKNRLSGTIP---ILLKNCTSLVTLDVGENEVFGNIP-SWFGERFSRMVLLILRSNNFDGP  472 (695)
Q Consensus       398 ~~~~~~~-~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~  472 (695)
                       .+|..+ ..+++|++|++++|++.+..|   ..+..+++|++|++++|.+.+..+ ......+++|++|++++|+++ .
T Consensus       324 -~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~  401 (549)
T 2z81_A          324 -LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-P  401 (549)
T ss_dssp             -CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-C
T ss_pred             -cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-c
Confidence             445444 456777777777777665443   235667777777777777743221 122336888888888888887 5


Q ss_pred             CCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhc
Q 036216          473 LPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEIL  552 (695)
Q Consensus       473 ~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  552 (695)
                      +|..+..+++|++|++++|+++ .+|..+                                                  .
T Consensus       402 lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~--------------------------------------------------~  430 (549)
T 2z81_A          402 MPDSCQWPEKMRFLNLSSTGIR-VVKTCI--------------------------------------------------P  430 (549)
T ss_dssp             CCSCCCCCTTCCEEECTTSCCS-CCCTTS--------------------------------------------------C
T ss_pred             CChhhcccccccEEECCCCCcc-cccchh--------------------------------------------------c
Confidence            7778888899999999999887 333321                                                  1


Q ss_pred             ccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEEc
Q 036216          553 NLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNL  632 (695)
Q Consensus       553 ~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l  632 (695)
                      +.|++||+++|++++..    ..+++|++|+|++|+++ .+|. .+.+++|+.|+|++|++++..|..+..+++|++|++
T Consensus       431 ~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l  504 (549)
T 2z81_A          431 QTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWL  504 (549)
T ss_dssp             TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEEC
T ss_pred             CCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEe
Confidence            23489999999998643    57899999999999999 7776 578999999999999999988888999999999999


Q ss_pred             ccCcCcccCCCCccc
Q 036216          633 SNNYLTGKIPSSTQL  647 (695)
Q Consensus       633 s~N~l~~~iP~~~~~  647 (695)
                      ++|++.+.+|....+
T Consensus       505 ~~N~~~~~~~~~~~l  519 (549)
T 2z81_A          505 HTNPWDCSCPRIDYL  519 (549)
T ss_dssp             CSSCBCCCHHHHHHH
T ss_pred             cCCCccCCCccHHHH
Confidence            999999988854333

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=5.1e-47  Score=418.89  Aligned_cols=510  Identities=19%  Similarity=0.190  Sum_probs=375.0

Q ss_pred             CcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCC
Q 036216            5 LVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLP   84 (695)
Q Consensus         5 L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~   84 (695)
                      .++++.++..++.+|.. +  .+++++|++++|.+++. .+..|.++++|++|++++|++++..+.+|.++++|++|+++
T Consensus         9 ~~~~~c~~~~l~~ip~~-l--~~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~   84 (570)
T 2z63_A            9 NITYQCMELNFYKIPDN-L--PFSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT   84 (570)
T ss_dssp             TTEEECCSSCCSSCCSS-S--CSSCCEEECCSCCCCEE-CTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CcEEEeCCCCccccCCC-c--cccccEEEccCCccCcc-ChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCc
Confidence            45788888889988863 3  25799999999999875 56678899999999999999988888889999999999999


Q ss_pred             CCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCcc
Q 036216           85 FNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSS  164 (695)
Q Consensus        85 ~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~  164 (695)
                      +|.+++..|.+|+++++|++|++++|.+++..+..++++++|++|++++|.+.+.                         
T Consensus        85 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~-------------------------  139 (570)
T 2z63_A           85 GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF-------------------------  139 (570)
T ss_dssp             TCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCC-------------------------
T ss_pred             CCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCcccee-------------------------
Confidence            9999877778899999999999999998866555788888888888888877541                         


Q ss_pred             cccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCC----CEEEcccccceeecCCCCCCCCC
Q 036216          165 ISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKL----SVFLVGANKLTLKVKRDWIPPFQ  240 (695)
Q Consensus       165 ~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L----~~L~l~~n~l~~~~~~~~~~~~~  240 (695)
                         .+|..++++++|++|++++|+++              .++...++.+++|    +.+++++|.+....+..+... +
T Consensus       140 ---~lp~~~~~l~~L~~L~l~~n~l~--------------~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~  201 (570)
T 2z63_A          140 ---KLPEYFSNLTNLEHLDLSSNKIQ--------------SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-R  201 (570)
T ss_dssp             ---CCCGGGGGCTTCCEEECTTSCCC--------------EECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-E
T ss_pred             ---cChhhhcccCCCCEEeCcCCccc--------------eecHHHccchhccchhhhhcccCCCCceecCHHHhccC-c
Confidence               12445666777777777777664              3444445555555    566666666665555444433 4


Q ss_pred             ccEEEccCCCCC-CCCCccccCCCCCCEEEcccCCCccccChHHhhcccccceeecccccccccccCccccCccceEecc
Q 036216          241 LIELGLRSCDVG-SRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLI  319 (695)
Q Consensus       241 L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~  319 (695)
                      |++|++++|... ..++..+..++.++...+....+..         ...++.  +...       .+..++.       
T Consensus       202 L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~---------~~~l~~--~~~~-------~~~~l~~-------  256 (570)
T 2z63_A          202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN---------EGNLEK--FDKS-------ALEGLCN-------  256 (570)
T ss_dssp             EEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC---------CSSCEE--CCTT-------TTGGGGG-------
T ss_pred             ceeEecccccccccchhhhhcCccccceeeeccccccC---------chhhhh--cchh-------hhccccc-------
Confidence            555555554322 1122333333333333322111100         000000  0000       0011110       


Q ss_pred             cccceeecCCCCCCCcEEEccCC-cCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeCCCCcccc
Q 036216          320 ANNFSGSLPLISSNLTVLELSGN-SLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTG  398 (695)
Q Consensus       320 ~n~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~  398 (695)
                                  -.++.++++++ .+.+..+.    .+..+++|+.|++++|.+. .+|..+..+ +|++|++++|.+. 
T Consensus       257 ------------l~l~~l~l~~~~~~~~~~~~----~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-  317 (570)
T 2z63_A          257 ------------LTIEEFRLAYLDYYLDDIID----LFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-  317 (570)
T ss_dssp             ------------SEEEEEEEEETTEEESCSTT----TTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-
T ss_pred             ------------cchhhhhhhcchhhhhhchh----hhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-
Confidence                        01334444444 33333332    3345788999999999888 577778888 9999999999998 


Q ss_pred             cCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccC--ChhhhhcCCCCcEEEcCCCcccccCCcc
Q 036216          399 NLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNI--PSWFGERFSRMVLLILRSNNFDGPLPTE  476 (695)
Q Consensus       399 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~l~~L~~L~l~~n~~~~~~~~~  476 (695)
                      .+|.  ..+++|++|++++|.+.+..+.  ..+++|++|++++|.+.+..  |..+. .+++|++|++++|.+.+..+ .
T Consensus       318 ~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~-~  391 (570)
T 2z63_A          318 QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDF-GTTSLKYLDLSFNGVITMSS-N  391 (570)
T ss_dssp             SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHH-TCSCCCEEECCSCSEEEEEE-E
T ss_pred             ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCcccccccccc-ccCccCEEECCCCccccccc-c
Confidence            5554  4678999999999998866654  67899999999999986543  55555 79999999999999986544 4


Q ss_pred             ccCCCCCCEEeCCCCcCcccCC-hhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccc
Q 036216          477 LCDLAFLQILDLADNNLSGTIP-NCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLV  555 (695)
Q Consensus       477 l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  555 (695)
                      +..+++|++|++++|++.+..| ..+..+++|                                                
T Consensus       392 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L------------------------------------------------  423 (570)
T 2z63_A          392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL------------------------------------------------  423 (570)
T ss_dssp             EETCTTCCEEECTTSEEESCTTSCTTTTCTTC------------------------------------------------
T ss_pred             ccccCCCCEEEccCCccccccchhhhhcCCCC------------------------------------------------
Confidence            9999999999999999986655 345555554                                                


Q ss_pred             cEEEcCCccccccCCccccCCCCCCEEeccCCccc-ccCCccccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEEccc
Q 036216          556 RIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFT-GRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSN  634 (695)
Q Consensus       556 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~  634 (695)
                      ++|++++|.+.+..|..+..+++|++|++++|.++ +.+|..++.+++|+.|++++|++++..|..+..+++|++|++++
T Consensus       424 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  503 (570)
T 2z63_A          424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS  503 (570)
T ss_dssp             CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCC
Confidence            89999999999999999999999999999999998 57899999999999999999999998899999999999999999


Q ss_pred             CcCcccCCCC-cccCccccccccCCc
Q 036216          635 NYLTGKIPSS-TQLQSFNASCFLGNN  659 (695)
Q Consensus       635 N~l~~~iP~~-~~~~~~~~~~~~~n~  659 (695)
                      |++++.+|.. ..+.+++...+.+|.
T Consensus       504 n~l~~~~~~~~~~l~~L~~L~l~~N~  529 (570)
T 2z63_A          504 NQLKSVPDGIFDRLTSLQKIWLHTNP  529 (570)
T ss_dssp             SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CcCCCCCHHHhhcccCCcEEEecCCc
Confidence            9999988764 567777777777764

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=3.9e-46  Score=417.90  Aligned_cols=534  Identities=20%  Similarity=0.180  Sum_probs=349.7

Q ss_pred             EEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCC
Q 036216            7 ELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFN   86 (695)
Q Consensus         7 ~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n   86 (695)
                      +.+.++.+++.||.. +  .+++++|||++|.|+.+ .+.+|.++++|++|+|++|+|+++.+++|.++++|++|+|++|
T Consensus        35 ~~~c~~~~l~~vP~~-l--p~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N  110 (635)
T 4g8a_A           35 TYQCMELNFYKIPDN-L--PFSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN  110 (635)
T ss_dssp             EEECTTSCCSSCCSS-S--CTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             EEECCCCCcCccCCC-C--CcCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC
Confidence            456666667777652 2  24677777777777764 4456777777777777777777666677777777777777777


Q ss_pred             CCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccc-cchhhhhhhcccccccceEEccCccc
Q 036216           87 HFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQE-ISEILEIFSGCVSNGLESLALASSSI  165 (695)
Q Consensus        87 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~~~~~~L~~L~L~~n~~  165 (695)
                      ++++..+.+|.++++|++|++++|.+++..+..|+++++|++|++++|.+.+. .+.    .++.+.. |++|++++|.+
T Consensus       111 ~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~----~~~~l~~-L~~L~L~~N~l  185 (635)
T 4g8a_A          111 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE----YFSNLTN-LEHLDLSSNKI  185 (635)
T ss_dssp             CCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG----GGGGCTT-CCEEECCSSCC
T ss_pred             cCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCch----hhccchh-hhhhcccCccc
Confidence            77766666677777777777777777765556677777777777777777543 233    4444555 77777777777


Q ss_pred             ccccchhcCCCCCC----CEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeec-CCCCCCCCC
Q 036216          166 SGHLTDQLGQFKNL----DSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKV-KRDWIPPFQ  240 (695)
Q Consensus       166 ~~~~~~~l~~l~~L----~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~  240 (695)
                      ++..+..+..+.++    ..++++.|.+.              .++...+. ...++.+++.+|...... ...+..+..
T Consensus       186 ~~~~~~~l~~L~~l~~~~~~~~ls~n~l~--------------~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~  250 (635)
T 4g8a_A          186 QSIYCTDLRVLHQMPLLNLSLDLSLNPMN--------------FIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAG  250 (635)
T ss_dssp             CEECGGGGHHHHTCTTCCCEEECTTCCCC--------------EECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTTTT
T ss_pred             cccccccccchhhhhhhhhhhhcccCccc--------------ccCccccc-chhhhhhhhhcccccccccchhhcCCcc
Confidence            77666666554433    35667777664              22222221 122333444433222110 011112222


Q ss_pred             ccEEEccCCCCCCCCCccccCCCCCCEEEcccCCCccccChHHhhcccccceeeccccccc----ccccCccccCccceE
Q 036216          241 LIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIH----GELTNLTKASQLSYL  316 (695)
Q Consensus       241 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~----~~~~~~~~~~~L~~L  316 (695)
                      ++...+.........                  .+. ......+.....+...++..+...    +....+.....++.+
T Consensus       251 l~~~~l~~~~~~~~~------------------~l~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l  311 (635)
T 4g8a_A          251 LEVHRLVLGEFRNEG------------------NLE-KFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSF  311 (635)
T ss_dssp             CEEEEEEEECCTTSC------------------CCS-CCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEE
T ss_pred             ccccccccccccccc------------------ccc-cccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccc
Confidence            222222111100000                  000 000011112222332222222111    112223333445555


Q ss_pred             ecccccceeecCC-CCCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeCCCCc
Q 036216          317 SLIANNFSGSLPL-ISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNK  395 (695)
Q Consensus       317 ~l~~n~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~  395 (695)
                      .+..+.+....+. ...+++.|++.+|.+.+....       .+..|+.+.+..|......  ....+++|+.+++++|.
T Consensus       312 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-------~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~  382 (635)
T 4g8a_A          312 SLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL-------KLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNG  382 (635)
T ss_dssp             EEESCEEEECGGGGSCCCCSEEEEESCEESSCCCC-------BCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSC
T ss_pred             cccccccccccccccchhhhhhhcccccccCcCcc-------cchhhhhcccccccCCCCc--ccccccccccchhhccc
Confidence            5555544433221 124566666666655432221       2456677777777655332  34467889999999888


Q ss_pred             ccc--cCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcccccC
Q 036216          396 FTG--NLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPL  473 (695)
Q Consensus       396 ~~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  473 (695)
                      +..  ..+..+..+.+|+.+++..+.... .+..+..+++|+.+++.++......+...+..+++++.++++.|.+.+..
T Consensus       383 l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~  461 (635)
T 4g8a_A          383 LSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF  461 (635)
T ss_dssp             CBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECC
T ss_pred             cccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccccccccccccccccccccccccc
Confidence            753  455566778899999999998874 45567889999999999988877777666668899999999999999888


Q ss_pred             CccccCCCCCCEEeCCCCcCc-ccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhc
Q 036216          474 PTELCDLAFLQILDLADNNLS-GTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEIL  552 (695)
Q Consensus       474 ~~~l~~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  552 (695)
                      +..+..++.|+.|++++|++. +..|..|..+++|                                             
T Consensus       462 ~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L---------------------------------------------  496 (635)
T 4g8a_A          462 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL---------------------------------------------  496 (635)
T ss_dssp             TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC---------------------------------------------
T ss_pred             ccccccchhhhhhhhhhcccccccCchhhhhcccc---------------------------------------------
Confidence            888999999999999999854 3466667666655                                             


Q ss_pred             ccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCcCC-CCCCEEE
Q 036216          553 NLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSL-TFLNHLN  631 (695)
Q Consensus       553 ~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~  631 (695)
                         ++|||++|++++..|..|.++++|++|+|++|++++..|..|+.+++|++|+|++|++++..|+.+..+ ++|++|+
T Consensus       497 ---~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~  573 (635)
T 4g8a_A          497 ---TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN  573 (635)
T ss_dssp             ---CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEE
T ss_pred             ---CEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEE
Confidence               889999999999999999999999999999999998889999999999999999999999999999988 6899999


Q ss_pred             cccCcCcccC
Q 036216          632 LSNNYLTGKI  641 (695)
Q Consensus       632 ls~N~l~~~i  641 (695)
                      +++|++...-
T Consensus       574 L~~Np~~C~C  583 (635)
T 4g8a_A          574 LTQNDFACTC  583 (635)
T ss_dssp             CTTCCBCCSG
T ss_pred             eeCCCCcccC
Confidence            9999998543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=6.4e-46  Score=404.71  Aligned_cols=459  Identities=19%  Similarity=0.214  Sum_probs=307.5

Q ss_pred             CEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEEccc
Q 036216           30 TTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSY  109 (695)
Q Consensus        30 ~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~  109 (695)
                      ++||+++|.++.  +|..+.  ++|++|++++|.+++..|..|.++++|++|++++|++++..|..|+++++|++|++++
T Consensus         3 ~~l~ls~n~l~~--ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~   78 (520)
T 2z7x_B            3 FLVDRSKNGLIH--VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH   78 (520)
T ss_dssp             CEEECTTSCCSS--CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred             ceEecCCCCccc--cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence            456666666664  555443  5666666666666655555666666666666666666655566666666666666666


Q ss_pred             CcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCcccccccchhcCCCCCCCEEEccCCCc
Q 036216          110 NSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLDLSNNSI  189 (695)
Q Consensus       110 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~i  189 (695)
                      |.++ .+|..  .+++|++|++++|++.+.                            ..|..++++++|++|++++|++
T Consensus        79 N~l~-~lp~~--~l~~L~~L~L~~N~l~~~----------------------------~~p~~~~~l~~L~~L~L~~n~l  127 (520)
T 2z7x_B           79 NKLV-KISCH--PTVNLKHLDLSFNAFDAL----------------------------PICKEFGNMSQLKFLGLSTTHL  127 (520)
T ss_dssp             SCCC-EEECC--CCCCCSEEECCSSCCSSC----------------------------CCCGGGGGCTTCCEEEEEESSC
T ss_pred             Ccee-ecCcc--ccCCccEEeccCCccccc----------------------------cchhhhccCCcceEEEecCccc
Confidence            6665 34433  455555555555544321                            2456788888899999888877


Q ss_pred             CCCceEEeeccccccccChhhhhCCCCC--CEEEcccccc--eeecCCCCCCCCCccEEEccCCCCCCCCCccccCCC-C
Q 036216          190 VGPRVLQLYLNKLHGTLSEIHFANLTKL--SVFLVGANKL--TLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQK-D  264 (695)
Q Consensus       190 ~~~~~~~l~~~~~~~~l~~~~~~~l~~L--~~L~l~~n~l--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~  264 (695)
                      ++                 ..+..+++|  +.|++++|.+  .+..+..                        +..+. .
T Consensus       128 ~~-----------------~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~------------------------l~~l~~~  166 (520)
T 2z7x_B          128 EK-----------------SSVLPIAHLNISKVLLVLGETYGEKEDPEG------------------------LQDFNTE  166 (520)
T ss_dssp             CG-----------------GGGGGGTTSCEEEEEEEECTTTTSSCCTTT------------------------TTTCCEE
T ss_pred             ch-----------------hhccccccceeeEEEeeccccccccccccc------------------------ccccccc
Confidence            51                 245566666  7777777766  4333333                        33322 1


Q ss_pred             CCEEEcccCCCccccChHHhhcccccceeeccccc-------ccccccCccccCccceEecccccceeecCCCCCCCcEE
Q 036216          265 LQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQ-------IHGELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVL  337 (695)
Q Consensus       265 L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~-------l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L  337 (695)
                      ...+++++|.+.+.++...+..+++|+.+++++|.       +.+.++.+..+++|+.|++++|.+.+..          
T Consensus       167 ~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~----------  236 (520)
T 2z7x_B          167 SLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNS----------  236 (520)
T ss_dssp             EEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHH----------
T ss_pred             eEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHH----------
Confidence            22445556666556666556667777777777775       5555556666666666666666554321          


Q ss_pred             EccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccc-----cCCCCCCEEeCCCCcccccCC-ccccCC---C
Q 036216          338 ELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCW-----MSYQNLMALDLSNNKFTGNLP-TSLGSL---S  408 (695)
Q Consensus       338 ~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-----~~~~~L~~L~ls~n~~~~~~~-~~~~~l---~  408 (695)
                                 +....... ..++|+.|++++|.+.+.+|..+     ..+++|+.+++++|.+  .+| ..+..+   .
T Consensus       237 -----------~~~~~~~~-~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~  302 (520)
T 2z7x_B          237 -----------FIRILQLV-WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNM  302 (520)
T ss_dssp             -----------HHHHHHHH-HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTC
T ss_pred             -----------HHHHHHHh-hhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccC
Confidence                       11111111 13467777777777776666666     6777777777777777  344 333333   5


Q ss_pred             CCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcccc--cCCccccCCCCCCEE
Q 036216          409 SLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDG--PLPTELCDLAFLQIL  486 (695)
Q Consensus       409 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L  486 (695)
                      +|+.|++++|.+....  .+..+++|++|++++|.+.+.+|..+. .+++|++|++++|++++  .+|..+..+++|++|
T Consensus       303 ~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L  379 (520)
T 2z7x_B          303 NIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCG-HLTELETLILQMNQLKELSKIAEMTTQMKSLQQL  379 (520)
T ss_dssp             CCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCC-CCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEE
T ss_pred             ceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhc-cCCCCCEEEccCCccCccccchHHHhhCCCCCEE
Confidence            6788888888765322  125677888888888888776776664 67888888888888876  455678888888888


Q ss_pred             eCCCCcCcccCChh-hhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCccc
Q 036216          487 DLADNNLSGTIPNC-IHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLF  565 (695)
Q Consensus       487 ~L~~n~l~~~~p~~-~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l  565 (695)
                      ++++|++++.+|.. +..+++                                                |+.|++++|++
T Consensus       380 ~Ls~N~l~~~l~~~~~~~l~~------------------------------------------------L~~L~Ls~N~l  411 (520)
T 2z7x_B          380 DISQNSVSYDEKKGDCSWTKS------------------------------------------------LLSLNMSSNIL  411 (520)
T ss_dssp             ECCSSCCBCCGGGCSCCCCTT------------------------------------------------CCEEECCSSCC
T ss_pred             ECCCCcCCcccccchhccCcc------------------------------------------------CCEEECcCCCC
Confidence            88888888645543 444433                                                37888999998


Q ss_pred             cccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcC-CcCCCCCCEEEcccCcCcccCCC
Q 036216          566 SGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQS-MSSLTFLNHLNLSNNYLTGKIPS  643 (695)
Q Consensus       566 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~ls~N~l~~~iP~  643 (695)
                      ++..|..+.  ++|++|++++|+++ .+|..+..+++|+.|++++|+++ .+|.. +..+++|++|++++|++++..|.
T Consensus       412 ~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~  486 (520)
T 2z7x_B          412 TDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR  486 (520)
T ss_dssp             CGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             Ccchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCCc
Confidence            887777665  79999999999999 88888889999999999999999 56665 89999999999999999976653

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.5e-45  Score=404.90  Aligned_cols=487  Identities=20%  Similarity=0.219  Sum_probs=356.3

Q ss_pred             CCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEE
Q 036216           27 STLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLS  106 (695)
Q Consensus        27 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  106 (695)
                      +...+.|.+++.++.  +|..+.  ++|++|++++|.+++..|..|.++++|++|++++|++++..|.+|+++++|++|+
T Consensus         5 ~~~~~c~~~~~~l~~--ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   80 (549)
T 2z81_A            5 DASGVCDGRSRSFTS--IPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD   80 (549)
T ss_dssp             CTTSEEECTTSCCSS--CCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCceEECCCCcccc--ccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEE
Confidence            334456888888887  676553  7899999999999888888899999999999999999887778899999999999


Q ss_pred             cccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCcccccccchhcCCCCCCCEEEccC
Q 036216          107 LSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLDLSN  186 (695)
Q Consensus       107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~  186 (695)
                      +++|.+++..+..|+++++|++|++++|++.+..                            .+..++++++|++|++++
T Consensus        81 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~----------------------------~~~~~~~l~~L~~L~L~~  132 (549)
T 2z81_A           81 LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLG----------------------------VTSLFPNLTNLQTLRIGN  132 (549)
T ss_dssp             CTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSC----------------------------SSCSCTTCTTCCEEEEEE
T ss_pred             CCCCccCccCHHHhccCCCCcEEECCCCcccccc----------------------------hhhhhhccCCccEEECCC
Confidence            9999988777777888888888888888775310                            234567788888888888


Q ss_pred             CCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCCCCccEEEccCCCCCCCCCccccCCCCCC
Q 036216          187 NSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQ  266 (695)
Q Consensus       187 n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~  266 (695)
                      |.+.             +.++...|.++++|+.|++++|.+.+.                        .|..+..+++|+
T Consensus       133 n~~~-------------~~~~~~~~~~l~~L~~L~L~~n~l~~~------------------------~~~~l~~l~~L~  175 (549)
T 2z81_A          133 VETF-------------SEIRRIDFAGLTSLNELEIKALSLRNY------------------------QSQSLKSIRDIH  175 (549)
T ss_dssp             SSSC-------------CEECTTTTTTCCEEEEEEEEETTCCEE------------------------CTTTTTTCSEEE
T ss_pred             Cccc-------------cccCHhhhhcccccCeeeccCCccccc------------------------ChhhhhccccCc
Confidence            7632             245544566666666666666655544                        445555566666


Q ss_pred             EEEcccCCCccccChHHhhcccccceeecccccccccccCccccCccceEecccccceeecCCCCCCCcEEEccCCcCCC
Q 036216          267 FLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSG  346 (695)
Q Consensus       267 ~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~  346 (695)
                      +|+++.|.+. .+|..++..+++|+.|++++|.+.+......                 ......++|+.|++++|.+++
T Consensus       176 ~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----------------~~~~~~~~L~~L~l~~n~l~~  237 (549)
T 2z81_A          176 HLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPL-----------------PVDEVSSPMKKLAFRGSVLTD  237 (549)
T ss_dssp             EEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCC-----------------SSCCCCCCCCEEEEESCEEEH
T ss_pred             eEecccCccc-ccchhhHhhcccccEEEccCCcccccccccc-----------------chhhhhhcccceeccccccch
Confidence            6666666654 5666666667788888888887765321000                 001113445555555555555


Q ss_pred             ccchhhhhhhhhccccceeecccccccCCC------CccccCCCCCCEEeCCCCccccc-----CCccccCCCCCcEEEC
Q 036216          347 PIFHFLCYTINETMKLKFLFLDRNILQGKL------PDCWMSYQNLMALDLSNNKFTGN-----LPTSLGSLSSLVSLHL  415 (695)
Q Consensus       347 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~------~~~~~~~~~L~~L~ls~n~~~~~-----~~~~~~~l~~L~~L~l  415 (695)
                      ..+..+...+..+++|+.+++++|.+.+..      ...+..+++++.|++.++.+...     .+..+...++|++|++
T Consensus       238 ~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l  317 (549)
T 2z81_A          238 ESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITV  317 (549)
T ss_dssp             HHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEE
T ss_pred             hHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEe
Confidence            444555555556677777777777765431      12345678889999888876532     1222344578999999


Q ss_pred             cCCcceeeCCccc-cCCCCCcEEEcCCCcccccCChh--hhhcCCCCcEEEcCCCcccccCC--ccccCCCCCCEEeCCC
Q 036216          416 RKNRLSGTIPILL-KNCTSLVTLDVGENEVFGNIPSW--FGERFSRMVLLILRSNNFDGPLP--TELCDLAFLQILDLAD  490 (695)
Q Consensus       416 ~~n~l~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~--~~l~~l~~L~~L~L~~  490 (695)
                      ++|++. .+|..+ ..+++|++|++++|.+.+.+|..  ....+++|++|++++|++++..+  ..+..+++|++|++++
T Consensus       318 ~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~  396 (549)
T 2z81_A          318 ENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISR  396 (549)
T ss_dssp             ESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTT
T ss_pred             ccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCC
Confidence            999987 566655 57999999999999998766543  12368999999999999986432  4588899999999999


Q ss_pred             CcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCccccccCC
Q 036216          491 NNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLP  570 (695)
Q Consensus       491 n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p  570 (695)
                      |+++ .+|..+..+++|                                                ++|++++|+++ .+|
T Consensus       397 N~l~-~lp~~~~~~~~L------------------------------------------------~~L~Ls~N~l~-~l~  426 (549)
T 2z81_A          397 NTFH-PMPDSCQWPEKM------------------------------------------------RFLNLSSTGIR-VVK  426 (549)
T ss_dssp             CCCC-CCCSCCCCCTTC------------------------------------------------CEEECTTSCCS-CCC
T ss_pred             CCCc-cCChhhcccccc------------------------------------------------cEEECCCCCcc-ccc
Confidence            9998 677666555544                                                89999999998 445


Q ss_pred             ccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEEcccCcCcccCCCC-cccCc
Q 036216          571 MGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSS-TQLQS  649 (695)
Q Consensus       571 ~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~iP~~-~~~~~  649 (695)
                      ..+  .++|++|++++|++++.+    +.+++|+.|++++|+++ .+|. ...+++|++|++++|++++.+|.. ..+..
T Consensus       427 ~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  498 (549)
T 2z81_A          427 TCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTS  498 (549)
T ss_dssp             TTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTT
T ss_pred             chh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcc
Confidence            443  268999999999999542    57899999999999999 6786 467999999999999999988874 67778


Q ss_pred             cccccccCCc
Q 036216          650 FNASCFLGNN  659 (695)
Q Consensus       650 ~~~~~~~~n~  659 (695)
                      ++...+.+|.
T Consensus       499 L~~L~l~~N~  508 (549)
T 2z81_A          499 LQKIWLHTNP  508 (549)
T ss_dssp             CCEEECCSSC
T ss_pred             cCEEEecCCC
Confidence            8888887773

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1e-45  Score=410.11  Aligned_cols=351  Identities=19%  Similarity=0.303  Sum_probs=263.0

Q ss_pred             cChhhhhCCCCCCEEEcccccceee-----------------cCCCCC--CCCCccEEEccCCCCCCCCCccccCCCCCC
Q 036216          206 LSEIHFANLTKLSVFLVGANKLTLK-----------------VKRDWI--PPFQLIELGLRSCDVGSRFPLWLYSQKDLQ  266 (695)
Q Consensus       206 l~~~~~~~l~~L~~L~l~~n~l~~~-----------------~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~  266 (695)
                      +|. .++++++|++|++++|.+++.                 .+..+.  .+++|++|++++|.+.+.+|..+..+++|+
T Consensus       198 ip~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  276 (636)
T 4eco_A          198 VSK-AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ  276 (636)
T ss_dssp             ECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred             CCH-HHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence            443 344555555555555555443                 666777  788888888888888888888888899999


Q ss_pred             EEEcccCC-Ccc-ccChHHhh-----cccccceeeccccccccccc--CccccCccceEecccccceeecCCCCCCCcEE
Q 036216          267 FLDLFNSG-ISG-TFPNRLLK-----SASQLYLLDLGHNQIHGELT--NLTKASQLSYLSLIANNFSGSLPLISSNLTVL  337 (695)
Q Consensus       267 ~L~l~~~~-i~~-~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L  337 (695)
                      +|++++|. +++ .+|..+..     .+++|++|++++|.+...+.  .+..+++|++|++++|.+.|.+| .+      
T Consensus       277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~------  349 (636)
T 4eco_A          277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AF------  349 (636)
T ss_dssp             EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CC------
T ss_pred             EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hh------
Confidence            99999998 887 78876643     24889999999999984444  47777788888877777776555 21      


Q ss_pred             EccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCC-CCEEeCCCCcccccCCccccCCC--CCcEEE
Q 036216          338 ELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQN-LMALDLSNNKFTGNLPTSLGSLS--SLVSLH  414 (695)
Q Consensus       338 ~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~-L~~L~ls~n~~~~~~~~~~~~l~--~L~~L~  414 (695)
                                         ..+++|+.|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+..++  +|++|+
T Consensus       350 -------------------~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~  408 (636)
T 4eco_A          350 -------------------GSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAID  408 (636)
T ss_dssp             -------------------EEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEE
T ss_pred             -------------------CCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEE
Confidence                               13556666667776666 56666777777 777777777777 5666665544  777888


Q ss_pred             CcCCcceeeCCcccc-------CCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCccc-cC-------
Q 036216          415 LRKNRLSGTIPILLK-------NCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTEL-CD-------  479 (695)
Q Consensus       415 l~~n~l~~~~~~~~~-------~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l-~~-------  479 (695)
                      +++|.+.+..|..+.       .+++|++|++++|.+. .+|..++..+++|+.|++++|+++ .+|..+ ..       
T Consensus       409 Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~  486 (636)
T 4eco_A          409 FSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKN  486 (636)
T ss_dssp             CCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTT
T ss_pred             CcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccc
Confidence            888877777776666       6678888888888874 677766656788888888888887 444433 22       


Q ss_pred             CCCCCEEeCCCCcCcccCChhhh--hcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccE
Q 036216          480 LAFLQILDLADNNLSGTIPNCIH--NLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRI  557 (695)
Q Consensus       480 l~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  557 (695)
                      +++|++|++++|+++ .+|..+.  .+++|                                                +.
T Consensus       487 l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L------------------------------------------------~~  517 (636)
T 4eco_A          487 TYLLTSIDLRFNKLT-KLSDDFRATTLPYL------------------------------------------------VG  517 (636)
T ss_dssp             GGGCCEEECCSSCCC-BCCGGGSTTTCTTC------------------------------------------------CE
T ss_pred             cCCccEEECcCCcCC-ccChhhhhccCCCc------------------------------------------------CE
Confidence            238899999999888 6777665  55555                                                78


Q ss_pred             EEcCCccccccCCccccCCCCCCEEec------cCCcccccCCccccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEE
Q 036216          558 IDFSKNLFSGTLPMGLTNLKAVQSLNL------SYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLN  631 (695)
Q Consensus       558 L~Ls~n~l~~~~p~~l~~l~~L~~L~L------s~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  631 (695)
                      |++++|++++ +|..+..+++|++|+|      ++|++.+.+|..++.+++|+.|+|++|++ +.+|..+.  ++|++|+
T Consensus       518 L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~  593 (636)
T 4eco_A          518 IDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLD  593 (636)
T ss_dssp             EECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEE
T ss_pred             EECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEE
Confidence            8899999986 8888888999999999      56788889999999999999999999999 58888876  7999999


Q ss_pred             cccCcCccc
Q 036216          632 LSNNYLTGK  640 (695)
Q Consensus       632 ls~N~l~~~  640 (695)
                      +++|++...
T Consensus       594 Ls~N~l~~~  602 (636)
T 4eco_A          594 IKDNPNISI  602 (636)
T ss_dssp             CCSCTTCEE
T ss_pred             CcCCCCccc
Confidence            999988743

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=3.4e-43  Score=393.97  Aligned_cols=524  Identities=19%  Similarity=0.182  Sum_probs=372.9

Q ss_pred             CEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEEccc
Q 036216           30 TTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSY  109 (695)
Q Consensus        30 ~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~  109 (695)
                      ++.+=++-.++.  +|..+-  +++++|+|++|+|+++.+.+|.++++|++|+|++|.++++.|.+|.++++|++|+|++
T Consensus        34 ~~~~c~~~~l~~--vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~  109 (635)
T 4g8a_A           34 ITYQCMELNFYK--IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG  109 (635)
T ss_dssp             TEEECTTSCCSS--CCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             CEEECCCCCcCc--cCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccC
Confidence            455656666776  776442  4799999999999988889999999999999999999988888999999999999999


Q ss_pred             CcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCcccccc-cchhcCCCCCCCEEEccCCC
Q 036216          110 NSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGH-LTDQLGQFKNLDSLDLSNNS  188 (695)
Q Consensus       110 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~L~~n~  188 (695)
                      |++++..+..|.++++|++|++++|++++..+.    .++.+.. |++|++++|.+.+. .|..++.+++|++|++++|+
T Consensus       110 N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~----~~~~L~~-L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~  184 (635)
T 4g8a_A          110 NPIQSLALGAFSGLSSLQKLVAVETNLASLENF----PIGHLKT-LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK  184 (635)
T ss_dssp             CCCCEECGGGGTTCTTCCEEECTTSCCCCSTTC----CCTTCTT-CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred             CcCCCCCHHHhcCCCCCCEEECCCCcCCCCChh----hhhcCcc-cCeeccccCccccCCCchhhccchhhhhhcccCcc
Confidence            999977778899999999999999998765443    3344444 66666666665543 34555556666666666665


Q ss_pred             cCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCCCCccEEEccCCCCCCCCCccccCCCCCCEE
Q 036216          189 IVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQFL  268 (695)
Q Consensus       189 i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L  268 (695)
                      ++              .++...|..+.+++.                    ....++++.+.+....+..+ ....++.+
T Consensus       185 l~--------------~~~~~~l~~L~~l~~--------------------~~~~~~ls~n~l~~i~~~~~-~~~~~~~l  229 (635)
T 4g8a_A          185 IQ--------------SIYCTDLRVLHQMPL--------------------LNLSLDLSLNPMNFIQPGAF-KEIRLHKL  229 (635)
T ss_dssp             CC--------------EECGGGGHHHHTCTT--------------------CCCEEECTTCCCCEECTTTT-TTCEEEEE
T ss_pred             cc--------------ccccccccchhhhhh--------------------hhhhhhcccCcccccCcccc-cchhhhhh
Confidence            54              222223332222210                    12234444444443333222 22345566


Q ss_pred             EcccCCCccccChHHhhcccccceeecccccccc-------cccCccccCccceEecccccce---eecC---CCCCCCc
Q 036216          269 DLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHG-------ELTNLTKASQLSYLSLIANNFS---GSLP---LISSNLT  335 (695)
Q Consensus       269 ~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~-------~~~~~~~~~~L~~L~l~~n~~~---~~~~---~~~~~L~  335 (695)
                      ++.+|.....++...+..+..++...+..+....       ....+.....+....+..+...   ....   ....+++
T Consensus       230 ~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~  309 (635)
T 4g8a_A          230 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVS  309 (635)
T ss_dssp             EEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCS
T ss_pred             hhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccc
Confidence            6766665555555556666666666654433221       1112333344444444433221   1111   1245788


Q ss_pred             EEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEEC
Q 036216          336 VLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHL  415 (695)
Q Consensus       336 ~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l  415 (695)
                      .+++.++.+....      .+.....++.|++.+|.+....+   ..++.|+.++++.|.....  .....+++|+.+++
T Consensus       310 ~l~~~~~~~~~~~------~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~l  378 (635)
T 4g8a_A          310 SFSLVSVTIERVK------DFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDL  378 (635)
T ss_dssp             EEEEESCEEEECG------GGGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCSCCB--CCCCBCTTCCEEEC
T ss_pred             ccccccccccccc------ccccchhhhhhhcccccccCcCc---ccchhhhhcccccccCCCC--cccccccccccchh
Confidence            8888887765322      12336688899999988875443   2467888899988887643  23457889999999


Q ss_pred             cCCcce--eeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCC-ccccCCCCCCEEeCCCCc
Q 036216          416 RKNRLS--GTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLP-TELCDLAFLQILDLADNN  492 (695)
Q Consensus       416 ~~n~l~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~L~~n~  492 (695)
                      ++|.+.  +..+..+..+.+|+.+++..|..... +..+. .+++|+.+++.++......+ ..+..+++++.+++++|.
T Consensus       379 s~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~-~~~~~-~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~  456 (635)
T 4g8a_A          379 SRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITM-SSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH  456 (635)
T ss_dssp             CSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEE-CSCCT-TCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSC
T ss_pred             hccccccccccccchhhhhhhhhhhccccccccc-ccccc-ccccccchhhhhccccccccccccccccccccccccccc
Confidence            999875  34566677888999999999887443 33333 68899999999887765543 457888999999999999


Q ss_pred             CcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCcccc-ccCCc
Q 036216          493 LSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFS-GTLPM  571 (695)
Q Consensus       493 l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~-~~~p~  571 (695)
                      +.+..|..+..++.+                                                +.|++++|++. +..|.
T Consensus       457 l~~~~~~~~~~~~~L------------------------------------------------~~L~Ls~N~~~~~~~~~  488 (635)
T 4g8a_A          457 TRVAFNGIFNGLSSL------------------------------------------------EVLKMAGNSFQENFLPD  488 (635)
T ss_dssp             CEECCTTTTTTCTTC------------------------------------------------CEEECTTCEEGGGEECS
T ss_pred             cccccccccccchhh------------------------------------------------hhhhhhhcccccccCch
Confidence            987777777666655                                                78999999854 46788


Q ss_pred             cccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEEcccCcCcccCCCC-ccc-Cc
Q 036216          572 GLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSS-TQL-QS  649 (695)
Q Consensus       572 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~iP~~-~~~-~~  649 (695)
                      .|..+++|++|+|++|++++..|..|+++++|++|+|++|++++..|..|..+++|++||+++|++++.+|.. ..+ .+
T Consensus       489 ~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~  568 (635)
T 4g8a_A          489 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSS  568 (635)
T ss_dssp             CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTT
T ss_pred             hhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCc
Confidence            9999999999999999999999999999999999999999999988999999999999999999999999876 333 46


Q ss_pred             cccccccCC
Q 036216          650 FNASCFLGN  658 (695)
Q Consensus       650 ~~~~~~~~n  658 (695)
                      ++...+.+|
T Consensus       569 L~~L~L~~N  577 (635)
T 4g8a_A          569 LAFLNLTQN  577 (635)
T ss_dssp             CCEEECTTC
T ss_pred             CCEEEeeCC
Confidence            666666665

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=3.6e-45  Score=398.78  Aligned_cols=454  Identities=19%  Similarity=0.223  Sum_probs=347.0

Q ss_pred             cEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCC
Q 036216            6 VELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPF   85 (695)
Q Consensus         6 ~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~   85 (695)
                      ++|++++|.++.+|....   ++|++|++++|.+++. .|..+.++++|++|++++|++++..|+.|.++++|++|++++
T Consensus         3 ~~l~ls~n~l~~ip~~~~---~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~   78 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKDLS---QKTTILNISQNYISEL-WTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH   78 (520)
T ss_dssp             CEEECTTSCCSSCCCSCC---TTCSEEECCSSCCCCC-CHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred             ceEecCCCCccccccccc---ccccEEECCCCccccc-ChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence            689999999999997433   8999999999999985 668899999999999999999988899999999999999999


Q ss_pred             CCCCCCchhhhcCCCCCCEEEcccCcCCc-ccchhhcCCCCCCEEEccCCcCccccchhhhhhhccccccc--ceEEccC
Q 036216           86 NHFSSSVPKWFDRLTHLEHLSLSYNSLEG-RIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGL--ESLALAS  162 (695)
Q Consensus        86 n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L--~~L~L~~  162 (695)
                      |+++ .+|..  .+++|++|++++|.+++ ..|..|+++++|++|++++|++.+.       .+..+.. |  ++|++++
T Consensus        79 N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~-------~~~~l~~-L~L~~L~l~~  147 (520)
T 2z7x_B           79 NKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS-------SVLPIAH-LNISKVLLVL  147 (520)
T ss_dssp             SCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG-------GGGGGTT-SCEEEEEEEE
T ss_pred             Ccee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh-------hcccccc-ceeeEEEeec
Confidence            9999 56655  89999999999999987 4789999999999999999998762       2333444 6  9999999


Q ss_pred             ccc--ccccchhcCCCCC-CCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEccccc-------ceeecC
Q 036216          163 SSI--SGHLTDQLGQFKN-LDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANK-------LTLKVK  232 (695)
Q Consensus       163 n~~--~~~~~~~l~~l~~-L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~-------l~~~~~  232 (695)
                      |.+  .+..|..+..+.. ...+++++|.+.             +.++...+.++++|+.+++++|.       +.+..+
T Consensus       148 n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~-------------~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~  214 (520)
T 2z7x_B          148 GETYGEKEDPEGLQDFNTESLHIVFPTNKEF-------------HFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA  214 (520)
T ss_dssp             CTTTTSSCCTTTTTTCCEEEEEEECCSSSCC-------------CCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH
T ss_pred             ccccccccccccccccccceEEEEeccCcch-------------hhhhhhhhhcccceeeccccccccccccceeecchh
Confidence            999  7777887777662 334566666654             45666677788888888888876       444443


Q ss_pred             CCCCCCCCccEEEccCCCCCCCCCcccc---CCCCCCEEEcccCCCccccChHHh----hcccccceeecccccccccc-
Q 036216          233 RDWIPPFQLIELGLRSCDVGSRFPLWLY---SQKDLQFLDLFNSGISGTFPNRLL----KSASQLYLLDLGHNQIHGEL-  304 (695)
Q Consensus       233 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~---~~~~L~~L~l~~~~i~~~~~~~~~----~~l~~L~~L~l~~n~l~~~~-  304 (695)
                       .+..+++|+.|++++|.+.+..+..+.   ..++|++|++++|.+.+.+|..++    ..+++|+.+++++|.+ ..+ 
T Consensus       215 -~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~  292 (520)
T 2z7x_B          215 -KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQ  292 (520)
T ss_dssp             -GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCT
T ss_pred             -hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecch
Confidence             566777788888877765543221111   135788888888887777777653    5677788888888777 222 


Q ss_pred             cCcccc---CccceEecccccceeec-CCCCCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccC--CCCc
Q 036216          305 TNLTKA---SQLSYLSLIANNFSGSL-PLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQG--KLPD  378 (695)
Q Consensus       305 ~~~~~~---~~L~~L~l~~n~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~  378 (695)
                      ..+...   .+|+.|++++|.+.... +..+++|++|++++|.+++.++..+    ..+++|++|++++|.+++  .+|.
T Consensus       293 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~----~~l~~L~~L~L~~N~l~~l~~~~~  368 (520)
T 2z7x_B          293 SYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENC----GHLTELETLILQMNQLKELSKIAE  368 (520)
T ss_dssp             HHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTC----CCCSSCCEEECCSSCCCBHHHHHH
T ss_pred             hhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhh----ccCCCCCEEEccCCccCccccchH
Confidence            122222   56888888888776544 2556788888888888876555433    457888888888888875  4456


Q ss_pred             cccCCCCCCEEeCCCCcccccCCc-cccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCC
Q 036216          379 CWMSYQNLMALDLSNNKFTGNLPT-SLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFS  457 (695)
Q Consensus       379 ~~~~~~~L~~L~ls~n~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~  457 (695)
                      .+..+++|++|++++|.+.+.+|. .+..+++|++|++++|++++..|..+.  ++|+.|++++|.+. .+|..++ .++
T Consensus       369 ~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~-~l~  444 (520)
T 2z7x_B          369 MTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVV-KLE  444 (520)
T ss_dssp             HHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGG-GCT
T ss_pred             HHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhh-cCC
Confidence            678888888888888888864554 477788888888888888766665553  68888888888884 7887776 788


Q ss_pred             CCcEEEcCCCcccccCCcc-ccCCCCCCEEeCCCCcCcccCC
Q 036216          458 RMVLLILRSNNFDGPLPTE-LCDLAFLQILDLADNNLSGTIP  498 (695)
Q Consensus       458 ~L~~L~l~~n~~~~~~~~~-l~~l~~L~~L~L~~n~l~~~~p  498 (695)
                      +|++|++++|++++ +|.. +..+++|++|++++|++++..+
T Consensus       445 ~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          445 ALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             TCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccCC
Confidence            88888888888884 4544 7888888888888888875443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=3.3e-45  Score=406.07  Aligned_cols=437  Identities=20%  Similarity=0.280  Sum_probs=257.6

Q ss_pred             CCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCc------c------cCCccCCCCCCCCEEeCCCCCCCCCchh
Q 036216           27 STLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQ------G------PIPEGLQNLTSLKHLGLPFNHFSSSVPK   94 (695)
Q Consensus        27 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~------~------~~~~~~~~l~~L~~L~L~~n~l~~~~p~   94 (695)
                      .+++.|+|+++.+.+. +|..++.+++|++|+|++|.+.      +      .+|...  +.+|+ +++++|.+.+..|.
T Consensus        81 ~~V~~L~L~~~~l~g~-lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~  156 (636)
T 4eco_A           81 GRVTGLSLEGFGASGR-VPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRE  156 (636)
T ss_dssp             CCEEEEECTTSCCEEE-ECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGG
T ss_pred             CCEEEEEecCcccCCc-CChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchh
Confidence            4677888888888766 7777888888888888888652      1      111111  23344 44444444444443


Q ss_pred             hhcC-------------------CCCCCEEEcc--cCcCCcccchhhcCCCCCCEEEccCCcCccc--------------
Q 036216           95 WFDR-------------------LTHLEHLSLS--YNSLEGRIPRSMARLCNLRRLYLGGAKLNQE--------------  139 (695)
Q Consensus        95 ~~~~-------------------l~~L~~L~Ls--~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--------------  139 (695)
                      .+..                   ...++.+.+.  +|.+++ +|..++++++|++|++++|.+++.              
T Consensus       157 ~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~  235 (636)
T 4eco_A          157 DFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYA  235 (636)
T ss_dssp             GSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHH
T ss_pred             hHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchh
Confidence            3331                   1112222222  456665 677777777777777777777663              


Q ss_pred             ---cchhhhhhhc--ccccccceEEccCcccccccchhcCCCCCCCEEEccCCC-cCCCceEEeecccccc-ccChhhhh
Q 036216          140 ---ISEILEIFSG--CVSNGLESLALASSSISGHLTDQLGQFKNLDSLDLSNNS-IVGPRVLQLYLNKLHG-TLSEIHFA  212 (695)
Q Consensus       140 ---~~~~~~~~~~--~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~-i~~~~~~~l~~~~~~~-~l~~~~~~  212 (695)
                         +|.    .++  .+.. |++|++++|.+.+.+|..++++++|++|++++|+ ++             + .+|. .+.
T Consensus       236 ~~~ip~----~l~~~~l~~-L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~-------------~~~lp~-~~~  296 (636)
T 4eco_A          236 QQYKTE----DLKWDNLKD-LTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS-------------GEQLKD-DWQ  296 (636)
T ss_dssp             HHHTTS----CCCGGGCTT-CCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSC-------------HHHHHH-HHH
T ss_pred             cccCch----hhhhcccCC-CCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCc-------------cccchH-HHH
Confidence               444    444  5555 7777777777777788888899999999999887 64             3 3444 333


Q ss_pred             CC------CCCCEEEcccccceeecCCCCCCCCCccEEEccCCCCCCCCCc--cccCCCCCCEEEcccCCCccccChHHh
Q 036216          213 NL------TKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPL--WLYSQKDLQFLDLFNSGISGTFPNRLL  284 (695)
Q Consensus       213 ~l------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~l~~~~~L~~L~l~~~~i~~~~~~~~~  284 (695)
                      ++      ++|+.|++++|.                        +. .+|.  .+..+++|++|++++|.+.|.+|  .+
T Consensus       297 ~L~~~~~l~~L~~L~L~~n~------------------------l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~  349 (636)
T 4eco_A          297 ALADAPVGEKIQIIYIGYNN------------------------LK-TFPVETSLQKMKKLGMLECLYNQLEGKLP--AF  349 (636)
T ss_dssp             HHHHSGGGGTCCEEECCSSC------------------------CS-SCCCHHHHTTCTTCCEEECCSCCCEEECC--CC
T ss_pred             hhhccccCCCCCEEECCCCc------------------------CC-ccCchhhhccCCCCCEEeCcCCcCccchh--hh
Confidence            32      444444444443                        33 3455  56666666666666666666666  34


Q ss_pred             hcccccceeecccccccccccCccccCc-cceEecccccceeecCCCCCCCcEEEccCCcCCCccchhhhhhhhhccccc
Q 036216          285 KSASQLYLLDLGHNQIHGELTNLTKASQ-LSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLK  363 (695)
Q Consensus       285 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~  363 (695)
                      ..+++|+.|++++|.+...+..+..+++ |++|++++|.                                         
T Consensus       350 ~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~-----------------------------------------  388 (636)
T 4eco_A          350 GSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNK-----------------------------------------  388 (636)
T ss_dssp             EEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSC-----------------------------------------
T ss_pred             CCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCc-----------------------------------------
Confidence            5566666666666666533333333333 3333333333                                         


Q ss_pred             eeecccccccCCCCccccCCC--CCCEEeCCCCcccccCCcccc-------CCCCCcEEECcCCcceeeCCccccCCCCC
Q 036216          364 FLFLDRNILQGKLPDCWMSYQ--NLMALDLSNNKFTGNLPTSLG-------SLSSLVSLHLRKNRLSGTIPILLKNCTSL  434 (695)
Q Consensus       364 ~L~l~~n~l~~~~~~~~~~~~--~L~~L~ls~n~~~~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  434 (695)
                              ++ .+|..+..++  +|++|++++|.+.+..|..+.       .+++|++|++++|++....+..+..+++|
T Consensus       389 --------l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L  459 (636)
T 4eco_A          389 --------LK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPL  459 (636)
T ss_dssp             --------CS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCC
T ss_pred             --------Cc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCC
Confidence                    33 2233332222  444444444444444444443       34455555555555542222233345555


Q ss_pred             cEEEcCCCcccccCChhhhhcC-------CCCcEEEcCCCcccccCCcccc--CCCCCCEEeCCCCcCcccCChhhhhcc
Q 036216          435 VTLDVGENEVFGNIPSWFGERF-------SRMVLLILRSNNFDGPLPTELC--DLAFLQILDLADNNLSGTIPNCIHNLT  505 (695)
Q Consensus       435 ~~L~l~~n~~~~~~~~~~~~~l-------~~L~~L~l~~n~~~~~~~~~l~--~l~~L~~L~L~~n~l~~~~p~~~~~l~  505 (695)
                      ++|++++|.+. .+|...+...       ++|+.|++++|+++ .+|..+.  .+++|++|++++|++++ +|..+..++
T Consensus       460 ~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~  536 (636)
T 4eco_A          460 SSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSS  536 (636)
T ss_dssp             SEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCS
T ss_pred             CEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCC
Confidence            55555555553 4444332222       25666666666666 4555554  66666666666666664 566555555


Q ss_pred             cCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEc------CCccccccCCccccCCCCC
Q 036216          506 AMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDF------SKNLFSGTLPMGLTNLKAV  579 (695)
Q Consensus       506 ~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~L------s~n~l~~~~p~~l~~l~~L  579 (695)
                      +|                                                +.|++      ++|++.+.+|..+..+++|
T Consensus       537 ~L------------------------------------------------~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L  568 (636)
T 4eco_A          537 TL------------------------------------------------KGFGIRNQRDAQGNRTLREWPEGITLCPSL  568 (636)
T ss_dssp             SC------------------------------------------------CEEECCSCBCTTCCBCCCCCCTTGGGCSSC
T ss_pred             CC------------------------------------------------CEEECCCCcccccCcccccChHHHhcCCCC
Confidence            54                                                44445      6788888999999999999


Q ss_pred             CEEeccCCcccccCCccccCcCCCCEEECCCCcccccCC
Q 036216          580 QSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIP  618 (695)
Q Consensus       580 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p  618 (695)
                      ++|+|++|++. .+|..+.  ++|+.|++++|++....+
T Consensus       569 ~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~~~  604 (636)
T 4eco_A          569 TQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNISIDL  604 (636)
T ss_dssp             CEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCEEEC
T ss_pred             CEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCccccH
Confidence            99999999994 8888766  899999999998875443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=7.6e-43  Score=383.41  Aligned_cols=461  Identities=18%  Similarity=0.205  Sum_probs=281.3

Q ss_pred             CCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEEc
Q 036216           28 TLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSL  107 (695)
Q Consensus        28 ~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  107 (695)
                      ..+++++++|.++.  +|..+.  ++|++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++
T Consensus        32 ~~~~l~ls~~~L~~--ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  107 (562)
T 3a79_B           32 LESMVDYSNRNLTH--VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV  107 (562)
T ss_dssp             -CCEEECTTSCCCS--CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCcEEEcCCCCCcc--CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence            33556666666554  444332  55666666666665555555556666666666666555555555555566666666


Q ss_pred             ccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCcccccc-cchhcCCCCCCCEEEccC
Q 036216          108 SYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGH-LTDQLGQFKNLDSLDLSN  186 (695)
Q Consensus       108 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~L~~  186 (695)
                      ++|.++ .+|..  .+++|++|++++|++                             .+. .|..|+++++|++|++++
T Consensus       108 s~N~l~-~lp~~--~l~~L~~L~Ls~N~l-----------------------------~~l~~p~~~~~l~~L~~L~L~~  155 (562)
T 3a79_B          108 SHNRLQ-NISCC--PMASLRHLDLSFNDF-----------------------------DVLPVCKEFGNLTKLTFLGLSA  155 (562)
T ss_dssp             TTSCCC-EECSC--CCTTCSEEECCSSCC-----------------------------SBCCCCGGGGGCTTCCEEEEEC
T ss_pred             CCCcCC-ccCcc--ccccCCEEECCCCCc-----------------------------cccCchHhhcccCcccEEecCC
Confidence            665555 33333  455555555555544                             332 245677788888888888


Q ss_pred             CCcCCCceEEeeccccccccChhhhhCCCCC--CEEEcccccc--eeecCCCCCCCCCccEEEccCCCCCCCCCccccCC
Q 036216          187 NSIVGPRVLQLYLNKLHGTLSEIHFANLTKL--SVFLVGANKL--TLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQ  262 (695)
Q Consensus       187 n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L--~~L~l~~n~l--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~  262 (695)
                      |++++                 ..+..+++|  +.|++++|.+  .+.                        .|..+..+
T Consensus       156 n~l~~-----------------~~~~~l~~L~L~~L~L~~n~l~~~~~------------------------~~~~l~~l  194 (562)
T 3a79_B          156 AKFRQ-----------------LDLLPVAHLHLSCILLDLVSYHIKGG------------------------ETESLQIP  194 (562)
T ss_dssp             SBCCT-----------------TTTGGGTTSCEEEEEEEESSCCCCSS------------------------SCCEEEEC
T ss_pred             Ccccc-----------------CchhhhhhceeeEEEeeccccccccc------------------------Cccccccc
Confidence            77641                 123344444  6666666665  333                        33333332


Q ss_pred             C-CCCEEEcccCCCccccChHHhhcccccceeeccccc-----ccccccCccccCccceEecccccceeecCCCCCCCcE
Q 036216          263 K-DLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQ-----IHGELTNLTKASQLSYLSLIANNFSGSLPLISSNLTV  336 (695)
Q Consensus       263 ~-~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~-----l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~  336 (695)
                      . ..-.+++++|.+.+.++...+..+++|+.+++++|.     +.+.++.+...+.|+.+++.++.+.+.          
T Consensus       195 ~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~----------  264 (562)
T 3a79_B          195 NTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWK----------  264 (562)
T ss_dssp             CEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHH----------
T ss_pred             CcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHH----------
Confidence            2 111345555555555555555556667777776663     222333444445555555554433321          


Q ss_pred             EEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccc-----cCCCCCCEEeCCCCcccccCC-cccc---CC
Q 036216          337 LELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCW-----MSYQNLMALDLSNNKFTGNLP-TSLG---SL  407 (695)
Q Consensus       337 L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-----~~~~~L~~L~ls~n~~~~~~~-~~~~---~l  407 (695)
                            .     .......+ ..++|++|++++|.+++.+|..+     ..++.|+.++++.+.+  .+| ..+.   ..
T Consensus       265 ------~-----~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~  330 (562)
T 3a79_B          265 ------C-----SVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAE  330 (562)
T ss_dssp             ------H-----HHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHT
T ss_pred             ------H-----HHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhcc
Confidence                  1     11111111 12366666666666666666554     4455555555555544  233 1111   12


Q ss_pred             CCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCccccc--CCccccCCCCCCE
Q 036216          408 SSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGP--LPTELCDLAFLQI  485 (695)
Q Consensus       408 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~l~~l~~L~~  485 (695)
                      .+|++|++++|.+....  ....+++|++|++++|.+.+.+|..+. .+++|++|++++|++++.  +|..+..+++|++
T Consensus       331 ~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~  407 (562)
T 3a79_B          331 MNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCS-TLKRLQTLILQRNGLKNFFKVALMTKNMSSLET  407 (562)
T ss_dssp             CCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCC-SCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCE
T ss_pred             CcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhc-ccCCCCEEECCCCCcCCcccchhhhcCCCCCCE
Confidence            56777777777764221  125677777777777777666666654 677788888888877752  3456788888888


Q ss_pred             EeCCCCcCcccCCh-hhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCcc
Q 036216          486 LDLADNNLSGTIPN-CIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNL  564 (695)
Q Consensus       486 L~L~~n~l~~~~p~-~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~  564 (695)
                      |++++|++++.+|. .+..+++|                                                +.|++++|+
T Consensus       408 L~l~~N~l~~~~~~~~~~~l~~L------------------------------------------------~~L~l~~n~  439 (562)
T 3a79_B          408 LDVSLNSLNSHAYDRTCAWAESI------------------------------------------------LVLNLSSNM  439 (562)
T ss_dssp             EECTTSCCBSCCSSCCCCCCTTC------------------------------------------------CEEECCSSC
T ss_pred             EECCCCcCCCccChhhhcCcccC------------------------------------------------CEEECCCCC
Confidence            88888888864554 34444433                                                788888888


Q ss_pred             ccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcC-CcCCCCCCEEEcccCcCcccCCC
Q 036216          565 FSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQS-MSSLTFLNHLNLSNNYLTGKIPS  643 (695)
Q Consensus       565 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~ls~N~l~~~iP~  643 (695)
                      +++..|..+.  ++|++|++++|+++ .+|..+..+++|+.|++++|+++ .+|.. +..+++|++|++++|++.+..|.
T Consensus       440 l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~  515 (562)
T 3a79_B          440 LTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPG  515 (562)
T ss_dssp             CCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred             CCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence            8877776554  79999999999999 78887789999999999999999 56665 99999999999999999987775


Q ss_pred             C
Q 036216          644 S  644 (695)
Q Consensus       644 ~  644 (695)
                      .
T Consensus       516 ~  516 (562)
T 3a79_B          516 I  516 (562)
T ss_dssp             H
T ss_pred             H
Confidence            4

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=2.5e-43  Score=396.37  Aligned_cols=75  Identities=23%  Similarity=0.317  Sum_probs=51.9

Q ss_pred             CcCCcccchhhcCCCCCCEEEccCCcCcc-----------------ccchhhhhhhc--ccccccceEEccCcccccccc
Q 036216          110 NSLEGRIPRSMARLCNLRRLYLGGAKLNQ-----------------EISEILEIFSG--CVSNGLESLALASSSISGHLT  170 (695)
Q Consensus       110 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----------------~~~~~~~~~~~--~~~~~L~~L~L~~n~~~~~~~  170 (695)
                      |.+++ +|..++++++|++|+|++|++++                 .+|.    .++  .+.. |+.|+|++|.+.+.+|
T Consensus       435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~----~l~f~~L~~-L~~L~Ls~N~l~~~iP  508 (876)
T 4ecn_A          435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE----ELSWSNLKD-LTDVELYNCPNMTQLP  508 (876)
T ss_dssp             CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS----CCCGGGCTT-CCEEEEESCTTCCSCC
T ss_pred             Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCCh----hhhhccCCC-CCEEECcCCCCCccCh
Confidence            55555 56666666666666666666665                 2343    333  5555 7777777777777778


Q ss_pred             hhcCCCCCCCEEEccCCC-cC
Q 036216          171 DQLGQFKNLDSLDLSNNS-IV  190 (695)
Q Consensus       171 ~~l~~l~~L~~L~L~~n~-i~  190 (695)
                      ..++++++|++|++++|+ ++
T Consensus       509 ~~l~~L~~L~~L~Ls~N~~ls  529 (876)
T 4ecn_A          509 DFLYDLPELQSLNIACNRGIS  529 (876)
T ss_dssp             GGGGGCSSCCEEECTTCTTSC
T ss_pred             HHHhCCCCCCEEECcCCCCcc
Confidence            888888889999988887 64

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=2.5e-43  Score=396.39  Aligned_cols=397  Identities=18%  Similarity=0.203  Sum_probs=217.8

Q ss_pred             CCCCCCchhhhcCCCCCCEEEcccCcCCc-----------------ccchhhc--CCCCCCEEEccCCcCccccchhhhh
Q 036216           86 NHFSSSVPKWFDRLTHLEHLSLSYNSLEG-----------------RIPRSMA--RLCNLRRLYLGGAKLNQEISEILEI  146 (695)
Q Consensus        86 n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~-----------------~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~  146 (695)
                      |.+++ +|..|+++++|++|+|++|.+++                 .+|..++  ++++|++|++++|.+.+.+|.    
T Consensus       435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~----  509 (876)
T 4ecn_A          435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPD----  509 (876)
T ss_dssp             CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCG----
T ss_pred             Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChH----
Confidence            55554 56666666666666666666665                 2566655  666666666666666666665    


Q ss_pred             hhcccccccceEEccCcc-ccc-ccchhcCC-------CCCCCEEEccCCCcCCCceEEeeccccccccCh-hhhhCCCC
Q 036216          147 FSGCVSNGLESLALASSS-ISG-HLTDQLGQ-------FKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSE-IHFANLTK  216 (695)
Q Consensus       147 ~~~~~~~~L~~L~L~~n~-~~~-~~~~~l~~-------l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~-~~~~~l~~  216 (695)
                      .++.++. |+.|++++|. +++ .+|..++.       +++|++|++++|.++              .+|. ..+.++++
T Consensus       510 ~l~~L~~-L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~--------------~ip~~~~l~~L~~  574 (876)
T 4ecn_A          510 FLYDLPE-LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE--------------EFPASASLQKMVK  574 (876)
T ss_dssp             GGGGCSS-CCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC--------------BCCCHHHHTTCTT
T ss_pred             HHhCCCC-CCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC--------------ccCChhhhhcCCC
Confidence            4555555 6666666665 665 55554444       448888888888875              5554 35777777


Q ss_pred             CCEEEcccccceeecCCCCCCCCCccEEEccCCCCCCCCCccccCCCC-CCEEEcccCCCccccChHHhhcccccceeec
Q 036216          217 LSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKD-LQFLDLFNSGISGTFPNRLLKSASQLYLLDL  295 (695)
Q Consensus       217 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l  295 (695)
                      |+.|++++|.+. .++ .+..+++|+.|++++|.+. .+|..+..+++ |++|++++|.+. .+|..+ ...+.      
T Consensus       575 L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~-~~~~~------  643 (876)
T 4ecn_A          575 LGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIF-NAKSV------  643 (876)
T ss_dssp             CCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCC-CTTCS------
T ss_pred             CCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhh-hcccc------
Confidence            777777777766 333 4555555555555555554 44444444444 444444444444 333211 11110      


Q ss_pred             ccccccccccCccccCccceEecccccceeecCCCCCCCcEEEccCCcCCCccchhhhh-hhhhccccceeecccccccC
Q 036216          296 GHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCY-TINETMKLKFLFLDRNILQG  374 (695)
Q Consensus       296 ~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~l~~  374 (695)
                                                          ++|+.|++++|.+.+.++...+. ....+++|+.|++++|.++ 
T Consensus       644 ------------------------------------~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-  686 (876)
T 4ecn_A          644 ------------------------------------YVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-  686 (876)
T ss_dssp             ------------------------------------SCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-
T ss_pred             ------------------------------------CCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-
Confidence                                                11333333333333221111000 0001123333334433333 


Q ss_pred             CCCcc-ccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhh
Q 036216          375 KLPDC-WMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFG  453 (695)
Q Consensus       375 ~~~~~-~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~  453 (695)
                      .+|.. +..+++|+.|++++|.+. .+|..+....                +..+.++++|+.|++++|.+. .+|..++
T Consensus       687 ~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~----------------~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~  748 (876)
T 4ecn_A          687 KFPTELFATGSPISTIILSNNLMT-SIPENSLKPK----------------DGNYKNTYLLTTIDLRFNKLT-SLSDDFR  748 (876)
T ss_dssp             SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCT----------------TSCCTTGGGCCEEECCSSCCC-CCCGGGS
T ss_pred             ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccc----------------cccccccCCccEEECCCCCCc-cchHHhh
Confidence            22221 223444444444444443 2222111100                000112236666666666664 5665553


Q ss_pred             -hcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCc
Q 036216          454 -ERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGT  532 (695)
Q Consensus       454 -~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~  532 (695)
                       ..+++|+.|++++|++++ +|..+..+++|+.|+|++|+                                        
T Consensus       749 ~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~----------------------------------------  787 (876)
T 4ecn_A          749 ATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR----------------------------------------  787 (876)
T ss_dssp             TTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB----------------------------------------
T ss_pred             hccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC----------------------------------------
Confidence             346677777777777765 56667777777777777764                                        


Q ss_pred             cccceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCc
Q 036216          533 VTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNK  612 (695)
Q Consensus       533 ~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~  612 (695)
                                                ++++|++.+.+|..+..+++|++|+|++|++ +.+|..+.  ++|+.|+|++|+
T Consensus       788 --------------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~  838 (876)
T 4ecn_A          788 --------------------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNP  838 (876)
T ss_dssp             --------------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCT
T ss_pred             --------------------------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCC
Confidence                                      1355666667777777777777777777777 46776654  577777777777


Q ss_pred             ccccCCcCCcCCCCCCEEEcccCcCc
Q 036216          613 FTGEIPQSMSSLTFLNHLNLSNNYLT  638 (695)
Q Consensus       613 l~~~~p~~l~~l~~L~~L~ls~N~l~  638 (695)
                      +....+..+.....+..+.+.+|+..
T Consensus       839 l~~i~~~~~~~~~~~~~~~L~~n~~~  864 (876)
T 4ecn_A          839 NISIDVTSVCPYIEAGMYVLLYDKTQ  864 (876)
T ss_dssp             TCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred             CCccChHHccccccchheeecCCCcc
Confidence            77666666655555556666666543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=3.1e-42  Score=378.59  Aligned_cols=469  Identities=20%  Similarity=0.229  Sum_probs=282.8

Q ss_pred             CCCcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEe
Q 036216            3 PSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLG   82 (695)
Q Consensus         3 ~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   82 (695)
                      ...+++++++++++.+|....   ++|++|++++|.+++. .|..+.++++|++|+|++|++++..|++|.++++|++|+
T Consensus        31 ~~~~~l~ls~~~L~~ip~~~~---~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  106 (562)
T 3a79_B           31 ELESMVDYSNRNLTHVPKDLP---PRTKALSLSQNSISEL-RMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD  106 (562)
T ss_dssp             --CCEEECTTSCCCSCCTTSC---TTCCEEECCSSCCCCC-CGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCcEEEcCCCCCccCCCCCC---CCcCEEECCCCCcccc-ChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence            345799999999999997433   8999999999999986 667899999999999999999988899999999999999


Q ss_pred             CCCCCCCCCchhhhcCCCCCCEEEcccCcCCcc-cchhhcCCCCCCEEEccCCcCccccchhhhhhhccccc-ccceEEc
Q 036216           83 LPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGR-IPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSN-GLESLAL  160 (695)
Q Consensus        83 L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~-~L~~L~L  160 (695)
                      +++|+++ .+|..  .+++|++|++++|.+.+. .|..|+++++|++|++++|++.+..       +..+.. .|++|++
T Consensus       107 Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~-------~~~l~~L~L~~L~L  176 (562)
T 3a79_B          107 VSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD-------LLPVAHLHLSCILL  176 (562)
T ss_dssp             CTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT-------TGGGTTSCEEEEEE
T ss_pred             CCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc-------hhhhhhceeeEEEe
Confidence            9999999 56655  899999999999999863 4689999999999999999987521       222222 1377777


Q ss_pred             cCccc--ccccchhcCCCCC-CCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCC
Q 036216          161 ASSSI--SGHLTDQLGQFKN-LDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIP  237 (695)
Q Consensus       161 ~~n~~--~~~~~~~l~~l~~-L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  237 (695)
                      ++|.+  .+..|..+..+.. .-.+++++|.+.             +.++...+..+++|+.+++++|.....       
T Consensus       177 ~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~-------------~~~~~~~~~~l~~L~~L~l~~n~~~~~-------  236 (562)
T 3a79_B          177 DLVSYHIKGGETESLQIPNTTVLHLVFHPNSLF-------------SVQVNMSVNALGHLQLSNIKLNDENCQ-------  236 (562)
T ss_dssp             EESSCCCCSSSCCEEEECCEEEEEEEECSSSCC-------------CCCCEEEESSEEEEEEEEEECCSTTHH-------
T ss_pred             ecccccccccCcccccccCcceEEEEecCccch-------------hhhhhhcccccceEEEecccccccccc-------
Confidence            77777  6666666655441 113344444443             223333333444444444444321000       


Q ss_pred             CCCccEEEccCCCCCCCCCccccCCCCCCEEEcccCCCccccChHHhhcccccceeecccccccccccCccccCccceEe
Q 036216          238 PFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLS  317 (695)
Q Consensus       238 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~  317 (695)
                                  .+ ......+..++.|+.+++.++.+.+...                    .+.. .....++|++|+
T Consensus       237 ------------~l-~~~~~~l~~l~~L~~L~L~~~~l~~~~~--------------------~~~~-~~~~~~~L~~L~  282 (562)
T 3a79_B          237 ------------RL-MTFLSELTRGPTLLNVTLQHIETTWKCS--------------------VKLF-QFFWPRPVEYLN  282 (562)
T ss_dssp             ------------HH-HHHHHHHHSCSSCEEEEEEEEEECHHHH--------------------HHHH-HHHTTSSEEEEE
T ss_pred             ------------hH-HHHHHHHhccCcceEEEecCCcCcHHHH--------------------HHHH-HhhhcccccEEE
Confidence                        00 0001122333344444443333221110                    0011 111223566666


Q ss_pred             cccccceeecCCCC-----CCCcEEEccCCcCCC-ccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeC
Q 036216          318 LIANNFSGSLPLIS-----SNLTVLELSGNSLSG-PIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDL  391 (695)
Q Consensus       318 l~~n~~~~~~~~~~-----~~L~~L~l~~n~l~~-~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l  391 (695)
                      +++|.+.+.+|...     ++++.|.+.++.... .+|......+....+|+.|++++|.+....  ....+++|++|++
T Consensus       283 l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l  360 (562)
T 3a79_B          283 IYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNF  360 (562)
T ss_dssp             EEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEEC
T ss_pred             EeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEEC
Confidence            66666655555433     334433333222111 122111111111234555555555543211  1134444555555


Q ss_pred             CCCcccccCCccccCCCCCcEEECcCCcceee--CCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcc
Q 036216          392 SNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGT--IPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNF  469 (695)
Q Consensus       392 s~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~  469 (695)
                      ++|.+++..|..+..+++|++|++++|++++.  .|..+.                         .+++|+.|++++|++
T Consensus       361 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~-------------------------~l~~L~~L~l~~N~l  415 (562)
T 3a79_B          361 TQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTK-------------------------NMSSLETLDVSLNSL  415 (562)
T ss_dssp             CSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTT-------------------------TCTTCCEEECTTSCC
T ss_pred             CCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhc-------------------------CCCCCCEEECCCCcC
Confidence            55554444444444444444444444444421  122233                         455556666666665


Q ss_pred             cccCCc-cccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchh
Q 036216          470 DGPLPT-ELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADY  548 (695)
Q Consensus       470 ~~~~~~-~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  548 (695)
                      ++.+|. .+..+++|++|++++|++++.+|..+.  +                                           
T Consensus       416 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~-------------------------------------------  450 (562)
T 3a79_B          416 NSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--P-------------------------------------------  450 (562)
T ss_dssp             BSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--T-------------------------------------------
T ss_pred             CCccChhhhcCcccCCEEECCCCCCCcchhhhhc--C-------------------------------------------
Confidence            553333 366677777777777777655444321  1                                           


Q ss_pred             hhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCcc-ccCcCCCCEEECCCCcccccCC
Q 036216          549 NEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPET-IGTMRSLESIDFSVNKFTGEIP  618 (695)
Q Consensus       549 ~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~Ls~n~l~~~~p  618 (695)
                           .|+.|++++|+++ .+|..+..+++|++|+|++|+++ .+|.. |+.+++|+.|++++|.+.+..|
T Consensus       451 -----~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          451 -----KVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             -----TCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred             -----cCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence                 2377888888887 67777778999999999999999 55555 8899999999999999886443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=2.1e-38  Score=339.49  Aligned_cols=384  Identities=21%  Similarity=0.222  Sum_probs=239.8

Q ss_pred             EEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcc-cCCccCCCCCCCCEEeCCC
Q 036216            7 ELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQG-PIPEGLQNLTSLKHLGLPF   85 (695)
Q Consensus         7 ~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~   85 (695)
                      .++.+++.++.+|.  +  .++|++|+|++|.+++. .|..+.++++|++|++++|.+.+ ..+..|.++++|++|++++
T Consensus        14 ~~~c~~~~l~~lp~--l--~~~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~   88 (455)
T 3v47_A           14 NAICINRGLHQVPE--L--PAHVNYVDLSLNSIAEL-NETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY   88 (455)
T ss_dssp             EEECCSSCCSSCCC--C--CTTCCEEECCSSCCCEE-CTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred             ccCcCCCCcccCCC--C--CCccCEEEecCCccCcC-ChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence            34555555555553  1  14555555555555543 34445555555555555555442 2234455555555555555


Q ss_pred             CCCCCCchhhhcCCCCCCEEEcccCcCCcccchh--hcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCc
Q 036216           86 NHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRS--MARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASS  163 (695)
Q Consensus        86 n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n  163 (695)
                      |.+++..|..|+++++|++|++++|.+++..+..  ++++++|++|++++|.+.                          
T Consensus        89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~--------------------------  142 (455)
T 3v47_A           89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK--------------------------  142 (455)
T ss_dssp             CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCC--------------------------
T ss_pred             CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccC--------------------------
Confidence            5555444555555555555555555554333222  444444444444444433                          


Q ss_pred             ccccccchh-cCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCC--CC
Q 036216          164 SISGHLTDQ-LGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPP--FQ  240 (695)
Q Consensus       164 ~~~~~~~~~-l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~--~~  240 (695)
                         +..|.. +..+++|++|++++|.++                                      +..+..+..+  ..
T Consensus       143 ---~~~~~~~~~~l~~L~~L~L~~n~l~--------------------------------------~~~~~~l~~l~~~~  181 (455)
T 3v47_A          143 ---KIQPASFFLNMRRFHVLDLTFNKVK--------------------------------------SICEEDLLNFQGKH  181 (455)
T ss_dssp             ---SCCCCGGGGGCTTCCEEECTTCCBS--------------------------------------CCCTTTSGGGTTCE
T ss_pred             ---ccCcccccCCCCcccEEeCCCCccc--------------------------------------ccChhhhhcccccc
Confidence               222222 455566666666666554                                      3333333322  34


Q ss_pred             ccEEEccCCCCCCCCCcc--------ccCCCCCCEEEcccCCCccccChHHhhc--ccccceeecccccccccccCcccc
Q 036216          241 LIELGLRSCDVGSRFPLW--------LYSQKDLQFLDLFNSGISGTFPNRLLKS--ASQLYLLDLGHNQIHGELTNLTKA  310 (695)
Q Consensus       241 L~~L~l~~~~~~~~~~~~--------l~~~~~L~~L~l~~~~i~~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~  310 (695)
                      ++.+++++|.+.+..+.+        +..+++|++|++++|.+.+..|..+...  .++|+.|++++|...+.......+
T Consensus       182 L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  261 (455)
T 3v47_A          182 FTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNF  261 (455)
T ss_dssp             EEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSS
T ss_pred             ccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhh
Confidence            555555555554433332        2345677888888887776666655432  256667777666554321111110


Q ss_pred             CccceEecccccceeecCCCCCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEe
Q 036216          311 SQLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALD  390 (695)
Q Consensus       311 ~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  390 (695)
                                                        .+.....+..  ...++|+.|++++|.+.+..|..+..+++|++|+
T Consensus       262 ----------------------------------~~~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  305 (455)
T 3v47_A          262 ----------------------------------KDPDNFTFKG--LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLT  305 (455)
T ss_dssp             ----------------------------------CCCCTTTTGG--GTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             ----------------------------------ccCccccccc--ccccCceEEEecCccccccchhhcccCCCCCEEE
Confidence                                              0000000000  0246788888888888888888889999999999


Q ss_pred             CCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCccc
Q 036216          391 LSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFD  470 (695)
Q Consensus       391 ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~  470 (695)
                      +++|.+.+..|..|..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+. .+++|++|++++|+++
T Consensus       306 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~  384 (455)
T 3v47_A          306 LAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFL-GLPNLKELALDTNQLK  384 (455)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCS
T ss_pred             CCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcc-ccccccEEECCCCccc
Confidence            999999988888899999999999999999888888899999999999999999777777665 6999999999999999


Q ss_pred             ccCCccccCCCCCCEEeCCCCcCcccCCh
Q 036216          471 GPLPTELCDLAFLQILDLADNNLSGTIPN  499 (695)
Q Consensus       471 ~~~~~~l~~l~~L~~L~L~~n~l~~~~p~  499 (695)
                      +..+..+..+++|++|++++|++++..|.
T Consensus       385 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          385 SVPDGIFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             cCCHhHhccCCcccEEEccCCCcccCCCc
Confidence            77777789999999999999999987773

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=2e-39  Score=343.71  Aligned_cols=261  Identities=21%  Similarity=0.250  Sum_probs=119.8

Q ss_pred             CCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEE
Q 036216           51 LSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLY  130 (695)
Q Consensus        51 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  130 (695)
                      .++|++|++++|.+ +.+|.+++++++|++|++++|.+.+.+|..++.+.+|+.++++.|..           .++++|+
T Consensus        10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L~   77 (454)
T 1jl5_A           10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHELE   77 (454)
T ss_dssp             -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEEE
T ss_pred             cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEEE
Confidence            45555555555555 35555555555555555555555555555555555544444333321           2345555


Q ss_pred             ccCCcCccccchhhhhhhcccccccceEEccCcccccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhh
Q 036216          131 LGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIH  210 (695)
Q Consensus       131 L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~  210 (695)
                      +++|.+++...         ...+|++|++++|.+++ +|..   .++|++|++++|++                     
T Consensus        78 l~~~~l~~lp~---------~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l---------------------  123 (454)
T 1jl5_A           78 LNNLGLSSLPE---------LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNL---------------------  123 (454)
T ss_dssp             CTTSCCSCCCS---------CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCC---------------------
T ss_pred             ecCCccccCCC---------CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCcc---------------------
Confidence            55555443111         01124444444444444 2221   24455555555544                     


Q ss_pred             hhCCCCCCEEEcccccceeecCCCCCCCCCccEEEccCCCCCCCCCccccCCCCCCEEEcccCCCccccChHHhhccccc
Q 036216          211 FANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQL  290 (695)
Q Consensus       211 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L  290 (695)
                                       .+...  +  .++|++|++++|.+.+ +| .+..+++|++|++++|.+. .+|..    ..+|
T Consensus       124 -----------------~~l~~--~--~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~-~lp~~----~~~L  175 (454)
T 1jl5_A          124 -----------------KALSD--L--PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDL----PPSL  175 (454)
T ss_dssp             -----------------SCCCS--C--CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-CCCCC----CTTC
T ss_pred             -----------------CcccC--C--CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc-ccCCC----cccc
Confidence                             32110  0  1355566666665554 44 4667777777777777776 35542    2477


Q ss_pred             ceeecccccccccccCccccCccceEecccccceeecCCCCCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccc
Q 036216          291 YLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRN  370 (695)
Q Consensus       291 ~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n  370 (695)
                      ++|++++|.+.+ ++.+..+++|++|++++|.+.+ +|..+++|+.|++++|.++ .++.     +..+++|++|++++|
T Consensus       176 ~~L~L~~n~l~~-l~~~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~n~l~-~lp~-----~~~l~~L~~L~l~~N  247 (454)
T 1jl5_A          176 EFIAAGNNQLEE-LPELQNLPFLTAIYADNNSLKK-LPDLPLSLESIVAGNNILE-ELPE-----LQNLPFLTTIYADNN  247 (454)
T ss_dssp             CEEECCSSCCSS-CCCCTTCTTCCEEECCSSCCSS-CCCCCTTCCEEECCSSCCS-SCCC-----CTTCTTCCEEECCSS
T ss_pred             cEEECcCCcCCc-CccccCCCCCCEEECCCCcCCc-CCCCcCcccEEECcCCcCC-cccc-----cCCCCCCCEEECCCC
Confidence            777887777775 3456666777777777776664 3434445666666655554 2221     223444555555554


Q ss_pred             cccCCCCccccCCCCCCEEeCCCCccc
Q 036216          371 ILQGKLPDCWMSYQNLMALDLSNNKFT  397 (695)
Q Consensus       371 ~l~~~~~~~~~~~~~L~~L~ls~n~~~  397 (695)
                      .+++ +|..   +++|++|++++|.+.
T Consensus       248 ~l~~-l~~~---~~~L~~L~l~~N~l~  270 (454)
T 1jl5_A          248 LLKT-LPDL---PPSLEALNVRDNYLT  270 (454)
T ss_dssp             CCSS-CCSC---CTTCCEEECCSSCCS
T ss_pred             cCCc-cccc---ccccCEEECCCCccc
Confidence            4442 2221   234444444444444

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=3.8e-38  Score=337.52  Aligned_cols=381  Identities=18%  Similarity=0.186  Sum_probs=260.3

Q ss_pred             cceEEccCcccccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCC
Q 036216          155 LESLALASSSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRD  234 (695)
Q Consensus       155 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~  234 (695)
                      +++|++++|.+++..|..|+++++|++|++++|.+.             +.++...|.++++|++|++++|.+....+..
T Consensus        32 l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~-------------~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~   98 (455)
T 3v47_A           32 VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPG-------------LVIRNNTFRGLSSLIILKLDYNQFLQLETGA   98 (455)
T ss_dssp             CCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTT-------------CEECTTTTTTCTTCCEEECTTCTTCEECTTT
T ss_pred             cCEEEecCCccCcCChhHhccCccccEEECcCCccc-------------ceECcccccccccCCEEeCCCCccCccChhh
Confidence            555555555555555667777888888888887764             3555556777788888888877777666667


Q ss_pred             CCCCCCccEEEccCCCCCCCCCcc--ccCCCCCCEEEcccCCCccccChHHhhcccccceeecccccccccccC-ccccC
Q 036216          235 WIPPFQLIELGLRSCDVGSRFPLW--LYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTN-LTKAS  311 (695)
Q Consensus       235 ~~~~~~L~~L~l~~~~~~~~~~~~--l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~  311 (695)
                      +..+++|++|++++|.+.+..+..  +..+++|++|++++|.+.+..|..++..+++|++|++++|.+.+..+. +..+.
T Consensus        99 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~  178 (455)
T 3v47_A           99 FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQ  178 (455)
T ss_dssp             TTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGT
T ss_pred             ccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccc
Confidence            777777777777777666544333  666677777777777766555555555666666666666666544331 11110


Q ss_pred             ccceEecccccceeecCCCCCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeC
Q 036216          312 QLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDL  391 (695)
Q Consensus       312 ~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l  391 (695)
                                         ..+++.+++++|.+.+..+..+..                    .....+..+++|++|++
T Consensus       179 -------------------~~~L~~L~l~~n~l~~~~~~~~~~--------------------~~~~~~~~~~~L~~L~L  219 (455)
T 3v47_A          179 -------------------GKHFTLLRLSSITLQDMNEYWLGW--------------------EKCGNPFKNTSITTLDL  219 (455)
T ss_dssp             -------------------TCEEEEEECTTCBCTTCSTTCTTH--------------------HHHCCTTTTCEEEEEEC
T ss_pred             -------------------cccccccccccCcccccchhhccc--------------------cccccccccceeeeEec
Confidence                               023444444444443221111100                    00011234566777777


Q ss_pred             CCCcccccCCccccCC---CCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhh-hcCCCCcEEEcCCC
Q 036216          392 SNNKFTGNLPTSLGSL---SSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFG-ERFSRMVLLILRSN  467 (695)
Q Consensus       392 s~n~~~~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~l~~L~~L~l~~n  467 (695)
                      ++|.+++..|..+...   ++|+.|++++|...+....              .+.+.+..+..+. ...++|+.|++++|
T Consensus       220 s~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~L~~L~l~~n  285 (455)
T 3v47_A          220 SGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG--------------HTNFKDPDNFTFKGLEASGVKTCDLSKS  285 (455)
T ss_dssp             TTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT--------------CCSSCCCCTTTTGGGTTSCCCEEECCSS
T ss_pred             CCCcccccchhhhhccccccceeeEeeccccccccccc--------------hhhhccCcccccccccccCceEEEecCc
Confidence            7777666555544332   6777777777765432110              1111111111111 13478899999999


Q ss_pred             cccccCCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcch
Q 036216          468 NFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAAD  547 (695)
Q Consensus       468 ~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  547 (695)
                      ++.+..|..+..+++|++|++++|++++..|..|..+++|                                        
T Consensus       286 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L----------------------------------------  325 (455)
T 3v47_A          286 KIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL----------------------------------------  325 (455)
T ss_dssp             CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC----------------------------------------
T ss_pred             cccccchhhcccCCCCCEEECCCCcccccChhHhcCcccC----------------------------------------
Confidence            9988888889999999999999999998778888777666                                        


Q ss_pred             hhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCcCCCCC
Q 036216          548 YNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFL  627 (695)
Q Consensus       548 ~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  627 (695)
                              ++|++++|.+++..|..|..+++|++|+|++|++++..|..|+.+++|+.|++++|++++..+..+..+++|
T Consensus       326 --------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  397 (455)
T 3v47_A          326 --------LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSL  397 (455)
T ss_dssp             --------CEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             --------CEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcc
Confidence                    788999999998889999999999999999999998889999999999999999999997777788999999


Q ss_pred             CEEEcccCcCcccCCCCcccCc
Q 036216          628 NHLNLSNNYLTGKIPSSTQLQS  649 (695)
Q Consensus       628 ~~L~ls~N~l~~~iP~~~~~~~  649 (695)
                      ++|++++|++++.+|....+..
T Consensus       398 ~~L~l~~N~l~~~~~~~~~l~~  419 (455)
T 3v47_A          398 QKIWLHTNPWDCSCPRIDYLSR  419 (455)
T ss_dssp             CEEECCSSCBCCCTTTTHHHHH
T ss_pred             cEEEccCCCcccCCCcchHHHH
Confidence            9999999999999997654433

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=4.4e-38  Score=333.39  Aligned_cols=350  Identities=23%  Similarity=0.268  Sum_probs=191.6

Q ss_pred             CCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCC-------------CEEeCCCCCCCCC
Q 036216           25 NFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSL-------------KHLGLPFNHFSSS   91 (695)
Q Consensus        25 ~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L-------------~~L~L~~n~l~~~   91 (695)
                      +.++|++|++++|.+..  +|+.++++++|++|++++|.+.+.+|..++++++|             ++|++++|.+++ 
T Consensus         9 ~~~~L~~L~l~~n~l~~--iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-   85 (454)
T 1jl5_A            9 SNTFLQEPLRHSSNLTE--MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-   85 (454)
T ss_dssp             ---------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-
T ss_pred             ccccchhhhcccCchhh--CChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-
Confidence            35789999999999954  88889999999999999999988889988888765             888888888875 


Q ss_pred             chhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCcccccccch
Q 036216           92 VPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTD  171 (695)
Q Consensus        92 ~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~  171 (695)
                      +|.   -.++|++|++++|.+++ +|..   .++|++|++++|++.+.. .        ...+|++|++++|.+++ +| 
T Consensus        86 lp~---~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~-~--------~~~~L~~L~L~~n~l~~-lp-  147 (454)
T 1jl5_A           86 LPE---LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALS-D--------LPPLLEYLGVSNNQLEK-LP-  147 (454)
T ss_dssp             CCS---CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCC-S--------CCTTCCEEECCSSCCSS-CC-
T ss_pred             CCC---CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCccc-C--------CCCCCCEEECcCCCCCC-Cc-
Confidence            343   13678888888888875 5543   367888888888776421 1        11237777777776665 34 


Q ss_pred             hcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCCCCccEEEccCCCC
Q 036216          172 QLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDV  251 (695)
Q Consensus       172 ~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~  251 (695)
                      .++++++|++|++++|+++              .+|.    ..++|+.|++++                        |.+
T Consensus       148 ~~~~l~~L~~L~l~~N~l~--------------~lp~----~~~~L~~L~L~~------------------------n~l  185 (454)
T 1jl5_A          148 ELQNSSFLKIIDVDNNSLK--------------KLPD----LPPSLEFIAAGN------------------------NQL  185 (454)
T ss_dssp             CCTTCTTCCEEECCSSCCS--------------CCCC----CCTTCCEEECCS------------------------SCC
T ss_pred             ccCCCCCCCEEECCCCcCc--------------ccCC----CcccccEEECcC------------------------CcC
Confidence            4666777777777766664              2221    112444444444                        444


Q ss_pred             CCCCCccccCCCCCCEEEcccCCCccccChHHhhcccccceeecccccccccccCccccCccceEecccccceeecCCCC
Q 036216          252 GSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLIS  331 (695)
Q Consensus       252 ~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~  331 (695)
                      .+ +| .+..+++|++|++++|.+. .+|..    .++|+.|++++|.+. .++.+..+++|++|++++|++.+ +|..+
T Consensus       186 ~~-l~-~~~~l~~L~~L~l~~N~l~-~l~~~----~~~L~~L~l~~n~l~-~lp~~~~l~~L~~L~l~~N~l~~-l~~~~  256 (454)
T 1jl5_A          186 EE-LP-ELQNLPFLTAIYADNNSLK-KLPDL----PLSLESIVAGNNILE-ELPELQNLPFLTTIYADNNLLKT-LPDLP  256 (454)
T ss_dssp             SS-CC-CCTTCTTCCEEECCSSCCS-SCCCC----CTTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSCCSS-CCSCC
T ss_pred             Cc-Cc-cccCCCCCCEEECCCCcCC-cCCCC----cCcccEEECcCCcCC-cccccCCCCCCCEEECCCCcCCc-ccccc
Confidence            43 23 3555666666666666665 34331    246677777777666 33445555666666666655543 23233


Q ss_pred             CCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCc
Q 036216          332 SNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLV  411 (695)
Q Consensus       332 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~  411 (695)
                      ++|+.|+++                            +|.+++ +|..   +++|++|++++|.+++. |..   .++|+
T Consensus       257 ~~L~~L~l~----------------------------~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~~---~~~L~  300 (454)
T 1jl5_A          257 PSLEALNVR----------------------------DNYLTD-LPEL---PQSLTFLDVSENIFSGL-SEL---PPNLY  300 (454)
T ss_dssp             TTCCEEECC----------------------------SSCCSC-CCCC---CTTCCEEECCSSCCSEE-SCC---CTTCC
T ss_pred             cccCEEECC----------------------------CCcccc-cCcc---cCcCCEEECcCCccCcc-cCc---CCcCC
Confidence            444444444                            444442 2321   25677777777776642 211   25677


Q ss_pred             EEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCC
Q 036216          412 SLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADN  491 (695)
Q Consensus       412 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n  491 (695)
                      +|++++|++.+. +.   ..++|++|++++|.+.+ +|.    .+++|++|++++|+++ .+|.   .+++|++|++++|
T Consensus       301 ~L~l~~N~l~~i-~~---~~~~L~~L~Ls~N~l~~-lp~----~~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N  367 (454)
T 1jl5_A          301 YLNASSNEIRSL-CD---LPPSLEELNVSNNKLIE-LPA----LPPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYN  367 (454)
T ss_dssp             EEECCSSCCSEE-CC---CCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSS
T ss_pred             EEECcCCcCCcc-cC---CcCcCCEEECCCCcccc-ccc----cCCcCCEEECCCCccc-cccc---hhhhccEEECCCC
Confidence            777777776642 21   11466666666666643 443    2455666666666555 2343   2455666666666


Q ss_pred             cCcc
Q 036216          492 NLSG  495 (695)
Q Consensus       492 ~l~~  495 (695)
                      ++++
T Consensus       368 ~l~~  371 (454)
T 1jl5_A          368 PLRE  371 (454)
T ss_dssp             CCSS
T ss_pred             CCCc
Confidence            5553

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.1e-35  Score=315.36  Aligned_cols=364  Identities=19%  Similarity=0.188  Sum_probs=201.6

Q ss_pred             CCCCcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEE
Q 036216            2 LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHL   81 (695)
Q Consensus         2 l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   81 (695)
                      +++|++|++++|.+++++  .+..+++|++|++++|.+++  +|  ++.+++|++|++++|.+++. +  +.++++|++|
T Consensus        41 l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~--~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L  111 (457)
T 3bz5_A           41 LATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNITT--LD--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYL  111 (457)
T ss_dssp             HTTCCEEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSC--CC--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEE
T ss_pred             cCCCCEEEccCCCcccCh--hhcccCCCCEEEccCCcCCe--Ec--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEE
Confidence            355666666666666554  35566666666666666655  33  55566666666666666543 2  5566666666


Q ss_pred             eCCCCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEcc
Q 036216           82 GLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALA  161 (695)
Q Consensus        82 ~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~  161 (695)
                      ++++|++++. |  ++.+++|++|++++|.+++.   .++.+++|++|++++|+..+.++      ++.+.. |++|+++
T Consensus       112 ~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~~------~~~l~~-L~~L~ls  178 (457)
T 3bz5_A          112 NCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLD------VTPQTQ-LTTLDCS  178 (457)
T ss_dssp             ECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCCC------CTTCTT-CCEEECC
T ss_pred             ECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcccccc------cccCCc-CCEEECC
Confidence            6666666542 2  55666666666666666542   25556666666666664333221      222233 5555555


Q ss_pred             CcccccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCCCCc
Q 036216          162 SSSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQL  241 (695)
Q Consensus       162 ~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L  241 (695)
                      +|.+++. |  ++.+++|++|++++|++++              +   .+..+++|+.|++++|++++. +  +..+++|
T Consensus       179 ~n~l~~l-~--l~~l~~L~~L~l~~N~l~~--------------~---~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L  235 (457)
T 3bz5_A          179 FNKITEL-D--VSQNKLLNRLNCDTNNITK--------------L---DLNQNIQLTFLDCSSNKLTEI-D--VTPLTQL  235 (457)
T ss_dssp             SSCCCCC-C--CTTCTTCCEEECCSSCCSC--------------C---CCTTCTTCSEEECCSSCCSCC-C--CTTCTTC
T ss_pred             CCcccee-c--cccCCCCCEEECcCCcCCe--------------e---ccccCCCCCEEECcCCccccc-C--ccccCCC
Confidence            5555552 2  4455555555555555441              1   134455555555555555442 1  4444555


Q ss_pred             cEEEccCCCCCCCCCccccCCCCCCEEEcccCCCccccChHHhhcccccceeecccccccccccCccccCccceEecccc
Q 036216          242 IELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIAN  321 (695)
Q Consensus       242 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n  321 (695)
                      +.|++++|.+.+..   +..+++|+.|+++.+               +|+.+++++|.+.+.++ +..+++|+.|++++|
T Consensus       236 ~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n---------------~L~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n  296 (457)
T 3bz5_A          236 TYFDCSVNPLTELD---VSTLSKLTTLHCIQT---------------DLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHN  296 (457)
T ss_dssp             SEEECCSSCCSCCC---CTTCTTCCEEECTTC---------------CCSCCCCTTCTTCCEEE-CTTCTTCCCCCCTTC
T ss_pred             CEEEeeCCcCCCcC---HHHCCCCCEEeccCC---------------CCCEEECCCCccCCccc-ccccccCCEEECCCC
Confidence            55555555544432   223444444444332               34455566665554444 344566666666666


Q ss_pred             cceeecCCCCCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeCCCCcccccCC
Q 036216          322 NFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLP  401 (695)
Q Consensus       322 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~  401 (695)
                      ...+.+|....+|+.+++++|                 ++|++|++++|.+++. +  +..+++|+.|++++|++++   
T Consensus       297 ~~l~~l~~~~~~L~~L~l~~~-----------------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~---  353 (457)
T 3bz5_A          297 TQLYLLDCQAAGITELDLSQN-----------------PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD---  353 (457)
T ss_dssp             TTCCEEECTTCCCSCCCCTTC-----------------TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB---
T ss_pred             cccceeccCCCcceEechhhc-----------------ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC---
Confidence            666655555555555554433                 4677777777777753 2  6677777777777777764   


Q ss_pred             ccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEE
Q 036216          402 TSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLL  462 (695)
Q Consensus       402 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L  462 (695)
                           ++.|..|++++|.+.+.     ..+..|+.+++++|.++|.+|..+.....++...
T Consensus       354 -----l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~~~~~~~~~  404 (457)
T 3bz5_A          354 -----FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNI  404 (457)
T ss_dssp             -----CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBCTTSCCCEE
T ss_pred             -----ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHhcccCceeec
Confidence                 24556666777776654     2345566677777777777776654434444433

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=5e-35  Score=310.24  Aligned_cols=365  Identities=22%  Similarity=0.191  Sum_probs=250.2

Q ss_pred             CCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCCCCCCCchhh
Q 036216           16 HHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKW   95 (695)
Q Consensus        16 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~   95 (695)
                      .......+.++++|++|++++|.+++  +| .+..+++|++|++++|.+++. |  +..+++|++|++++|.+++. +  
T Consensus        31 ~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--  101 (457)
T 3bz5_A           31 QATDTISEEQLATLTSLDCHNSSITD--MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--  101 (457)
T ss_dssp             CTTSEEEHHHHTTCCEEECCSSCCCC--CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--
T ss_pred             CcccccChhHcCCCCEEEccCCCccc--Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--
Confidence            33344467788999999999999987  55 578899999999999998864 3  88899999999999998864 3  


Q ss_pred             hcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCcccccccchhcCC
Q 036216           96 FDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQ  175 (695)
Q Consensus        96 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~  175 (695)
                      ++++++|++|++++|.+++ ++  ++.+++|++|++++|++++.       .++.+.. |++|++++|...+.+  .++.
T Consensus       102 ~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-------~l~~l~~-L~~L~l~~n~~~~~~--~~~~  168 (457)
T 3bz5_A          102 VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-------DVSHNTQ-LTELDCHLNKKITKL--DVTP  168 (457)
T ss_dssp             CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-------CCTTCTT-CCEEECTTCSCCCCC--CCTT
T ss_pred             cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee-------ccccCCc-CCEEECCCCCccccc--cccc
Confidence            8889999999999999886 34  78888899999988887653       1223333 666666666433333  2555


Q ss_pred             CCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCCCCccEEEccCCCCCCCC
Q 036216          176 FKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSRF  255 (695)
Q Consensus       176 l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~  255 (695)
                      +++|++|++++|+++              .++   +..+++|+.|++++|.++                        +. 
T Consensus       169 l~~L~~L~ls~n~l~--------------~l~---l~~l~~L~~L~l~~N~l~------------------------~~-  206 (457)
T 3bz5_A          169 QTQLTTLDCSFNKIT--------------ELD---VSQNKLLNRLNCDTNNIT------------------------KL-  206 (457)
T ss_dssp             CTTCCEEECCSSCCC--------------CCC---CTTCTTCCEEECCSSCCS------------------------CC-
T ss_pred             CCcCCEEECCCCccc--------------eec---cccCCCCCEEECcCCcCC------------------------ee-
Confidence            556666666665554              222   344555555555555544                        32 


Q ss_pred             CccccCCCCCCEEEcccCCCccccChHHhhcccccceeecccccccccccCccccCccceEecccccceeecCCCCCCCc
Q 036216          256 PLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLISSNLT  335 (695)
Q Consensus       256 ~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~  335 (695)
                        .+..+++|++|++++|++.+ +|   +..+++|+.|++++|.+.+..  ...+++|+.|+++.|           +|+
T Consensus       207 --~l~~l~~L~~L~Ls~N~l~~-ip---~~~l~~L~~L~l~~N~l~~~~--~~~l~~L~~L~l~~n-----------~L~  267 (457)
T 3bz5_A          207 --DLNQNIQLTFLDCSSNKLTE-ID---VTPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQT-----------DLL  267 (457)
T ss_dssp             --CCTTCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECTTC-----------CCS
T ss_pred             --ccccCCCCCEEECcCCcccc-cC---ccccCCCCEEEeeCCcCCCcC--HHHCCCCCEEeccCC-----------CCC
Confidence              24455666666666666653 44   345566666666666666533  334556666666543           355


Q ss_pred             EEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEEC
Q 036216          336 VLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHL  415 (695)
Q Consensus       336 ~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l  415 (695)
                      .+++++|.+.+.+|.      ..+++|+.|++++|...+.+|.   ..++|+.|++++|             ++|++|++
T Consensus       268 ~L~l~~n~~~~~~~~------~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L  325 (457)
T 3bz5_A          268 EIDLTHNTQLIYFQA------EGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYL  325 (457)
T ss_dssp             CCCCTTCTTCCEEEC------TTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEEC
T ss_pred             EEECCCCccCCcccc------cccccCCEEECCCCcccceecc---CCCcceEechhhc-------------ccCCEEEC
Confidence            667777776655542      2467888888888876666653   3455555555544             68889999


Q ss_pred             cCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCcc
Q 036216          416 RKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSG  495 (695)
Q Consensus       416 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~  495 (695)
                      ++|++++. +  +..+++|+.|++++|++.+         ++.|..|.+++|.+.|.     ..+..|+.+++++|+++|
T Consensus       326 ~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~---------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g  388 (457)
T 3bz5_A          326 NNTELTEL-D--VSHNTKLKSLSCVNAHIQD---------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTI  388 (457)
T ss_dssp             TTCCCSCC-C--CTTCTTCSEEECCSSCCCB---------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEE
T ss_pred             CCCccccc-c--cccCCcCcEEECCCCCCCC---------ccccccccccCCcEEec-----ceeeecCccccccCcEEE
Confidence            99998864 3  7888999999999998854         45666777888888765     345678888999999999


Q ss_pred             cCChhhh
Q 036216          496 TIPNCIH  502 (695)
Q Consensus       496 ~~p~~~~  502 (695)
                      .+|..+.
T Consensus       389 ~ip~~~~  395 (457)
T 3bz5_A          389 AVSPDLL  395 (457)
T ss_dssp             ECCTTCB
T ss_pred             EcChhHh
Confidence            9987643

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=4.6e-34  Score=305.79  Aligned_cols=343  Identities=28%  Similarity=0.348  Sum_probs=183.9

Q ss_pred             CCcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeC
Q 036216            4 SLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGL   83 (695)
Q Consensus         4 ~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L   83 (695)
                      ++++|+++++.+..++.  +..+++|++|++++|.+++  ++. +.++++|++|++++|.+.+..+  +.++++|++|++
T Consensus        47 ~l~~L~l~~~~i~~l~~--~~~l~~L~~L~Ls~n~l~~--~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L  119 (466)
T 1o6v_A           47 QVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTD--ITP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL  119 (466)
T ss_dssp             TCCEEECCSSCCCCCTT--GGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred             cccEEecCCCCCccCcc--hhhhcCCCEEECCCCccCC--chh-hhccccCCEEECCCCccccChh--hcCCCCCCEEEC
Confidence            45555555555555442  4445555555555555544  222 4455555555555555553322  555555555555


Q ss_pred             CCCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCc
Q 036216           84 PFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASS  163 (695)
Q Consensus        84 ~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n  163 (695)
                      ++|.+++..+  +..+++|++|++++|.+.+ ++ .++.+++|++|++++                              
T Consensus       120 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~~------------------------------  165 (466)
T 1o6v_A          120 FNNQITDIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFGN------------------------------  165 (466)
T ss_dssp             CSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEEE------------------------------
T ss_pred             CCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecCC------------------------------
Confidence            5555553321  4555555555555555442 22 244555555555432                              


Q ss_pred             ccccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCCCCccE
Q 036216          164 SISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIE  243 (695)
Q Consensus       164 ~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~  243 (695)
                      .+.+..  .+.++++|++|++++|.+.              .++  .+..+++|+.|++++|.+.+..+  +..+++|++
T Consensus       166 ~~~~~~--~~~~l~~L~~L~l~~n~l~--------------~~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~  225 (466)
T 1o6v_A          166 QVTDLK--PLANLTTLERLDISSNKVS--------------DIS--VLAKLTNLESLIATNNQISDITP--LGILTNLDE  225 (466)
T ss_dssp             SCCCCG--GGTTCTTCCEEECCSSCCC--------------CCG--GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCE
T ss_pred             cccCch--hhccCCCCCEEECcCCcCC--------------CCh--hhccCCCCCEEEecCCccccccc--ccccCCCCE
Confidence            222211  2556666666666666654              121  24555666666666655543332  334445555


Q ss_pred             EEccCCCCCCCCCccccCCCCCCEEEcccCCCccccChHHhhcccccceeecccccccccccCccccCccceEecccccc
Q 036216          244 LGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNF  323 (695)
Q Consensus       244 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~  323 (695)
                      |++++|.+.+.  ..+..+++|++|++++|.+.+..+   +..+++|+.|++++|.+.+..+ +..+             
T Consensus       226 L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~-~~~l-------------  286 (466)
T 1o6v_A          226 LSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISNISP-LAGL-------------  286 (466)
T ss_dssp             EECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCCCCGG-GTTC-------------
T ss_pred             EECCCCCcccc--hhhhcCCCCCEEECCCCccccchh---hhcCCCCCEEECCCCccCcccc-ccCC-------------
Confidence            55555544432  234455555555555555542222   3445555555555555543222 3333             


Q ss_pred             eeecCCCCCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeCCCCcccccCCcc
Q 036216          324 SGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTS  403 (695)
Q Consensus       324 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~  403 (695)
                              ++|+.|++++|.+.+..+      +..+++|+.|++++|.+++..|  +..+++|++|++++|.+++.  ..
T Consensus       287 --------~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~  348 (466)
T 1o6v_A          287 --------TALTNLELNENQLEDISP------ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SS  348 (466)
T ss_dssp             --------TTCSEEECCSSCCSCCGG------GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GG
T ss_pred             --------CccCeEEcCCCcccCchh------hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hh
Confidence                    445555555555544222      3346677777777777765544  56677777777777777643  35


Q ss_pred             ccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccc
Q 036216          404 LGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFG  446 (695)
Q Consensus       404 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~  446 (695)
                      +..+++|+.|++++|++.+..|  +..+++|+.|++++|.+++
T Consensus       349 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          349 LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             GTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             hccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            6777777777777777776655  6677777777777777744

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=7.1e-34  Score=305.92  Aligned_cols=321  Identities=18%  Similarity=0.183  Sum_probs=214.3

Q ss_pred             cEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCC
Q 036216            6 VELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPF   85 (695)
Q Consensus         6 ~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~   85 (695)
                      +.++.+++.++.+|.. +  .+++++|+|++|.+++. .+..|.++++|++|+|++|.+++..|.+|.++++|++|++++
T Consensus        14 ~~v~c~~~~l~~ip~~-~--~~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~   89 (477)
T 2id5_A           14 RAVLCHRKRFVAVPEG-I--PTETRLLDLGKNRIKTL-NQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS   89 (477)
T ss_dssp             TEEECCSCCCSSCCSC-C--CTTCSEEECCSSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCcCCCC-C--CCCCcEEECCCCccceE-CHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence            5678888888888763 2  35788888888888875 567788888888888888888877788888888888888888


Q ss_pred             CCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCccc
Q 036216           86 NHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSI  165 (695)
Q Consensus        86 n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~  165 (695)
                      |.++...+..|.++++|++|++++|.+.+..+..|.++++|++|++++|.+.+.                          
T Consensus        90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~--------------------------  143 (477)
T 2id5_A           90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYI--------------------------  143 (477)
T ss_dssp             SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEE--------------------------
T ss_pred             CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCcccee--------------------------
Confidence            888866666778888888888888888877777888888888888887776543                          


Q ss_pred             ccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCCCCccEEE
Q 036216          166 SGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELG  245 (695)
Q Consensus       166 ~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  245 (695)
                         .+..|..+++|++|++++|+++              .++...|.++++|+.|++++|.+....+..+..+++|+.|+
T Consensus       144 ---~~~~~~~l~~L~~L~l~~n~l~--------------~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~  206 (477)
T 2id5_A          144 ---SHRAFSGLNSLEQLTLEKCNLT--------------SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLE  206 (477)
T ss_dssp             ---CTTSSTTCTTCCEEEEESCCCS--------------SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEE
T ss_pred             ---ChhhccCCCCCCEEECCCCcCc--------------ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceee
Confidence               3445677788888888888775              56666777888888888888877766655566666666666


Q ss_pred             ccCCCCCCCCCccccCCCCCCEEEcccCCCccccChHHhhcccccceeecccccccccccCccccCccceEeccccccee
Q 036216          246 LRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSG  325 (695)
Q Consensus       246 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~  325 (695)
                      +++|...+.++.......+|++|++++|.+. .+|...+..++                                     
T Consensus       207 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~-------------------------------------  248 (477)
T 2id5_A          207 ISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLV-------------------------------------  248 (477)
T ss_dssp             EECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCHHHHTTCT-------------------------------------
T ss_pred             CCCCccccccCcccccCccccEEECcCCccc-ccCHHHhcCcc-------------------------------------
Confidence            6655544444443333334444444444444 33333333333                                     


Q ss_pred             ecCCCCCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeCCCCcccccCCcccc
Q 036216          326 SLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLG  405 (695)
Q Consensus       326 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~  405 (695)
                                                         +|+.|++++|.+++..+..|..+++|++|++++|.+.+..|..|.
T Consensus       249 -----------------------------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  293 (477)
T 2id5_A          249 -----------------------------------YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFR  293 (477)
T ss_dssp             -----------------------------------TCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBT
T ss_pred             -----------------------------------ccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhc
Confidence                                               333333333333333334455555666666666666655555666


Q ss_pred             CCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccc
Q 036216          406 SLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFG  446 (695)
Q Consensus       406 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~  446 (695)
                      .+++|++|++++|++++..+..|..+++|++|++++|++..
T Consensus       294 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c  334 (477)
T 2id5_A          294 GLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC  334 (477)
T ss_dssp             TCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred             CcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence            66666666666666665444555666666666666666543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=9.2e-34  Score=303.43  Aligned_cols=326  Identities=24%  Similarity=0.325  Sum_probs=196.9

Q ss_pred             hhCCCCCCEEEcccccceeecCCCCCCCCCccEEEccCCCCCCCCCccccCCCCCCEEEcccCCCccccChHHhhccccc
Q 036216          211 FANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQL  290 (695)
Q Consensus       211 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L  290 (695)
                      +..+++|++|++++|.+....+  +..+++|++|++++|.+.+..+  +..+++|++|++++|.+. .++.  +..+++|
T Consensus        64 ~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~-~~~~--~~~l~~L  136 (466)
T 1o6v_A           64 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT-DIDP--LKNLTNL  136 (466)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTTCTTC
T ss_pred             hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCC-CChH--HcCCCCC
Confidence            3444444444444444443322  4444455555555554444333  556666666666666665 3333  4556667


Q ss_pred             ceeecccccccccccCccccCccceEecccccceeecCCCCCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccc
Q 036216          291 YLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRN  370 (695)
Q Consensus       291 ~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n  370 (695)
                      ++|++++|.+.+ ++.+..+++|++|++.+ .+.+..                           .+..+++|+.|++++|
T Consensus       137 ~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~-~~~~~~---------------------------~~~~l~~L~~L~l~~n  187 (466)
T 1o6v_A          137 NRLELSSNTISD-ISALSGLTSLQQLSFGN-QVTDLK---------------------------PLANLTTLERLDISSN  187 (466)
T ss_dssp             SEEEEEEEEECC-CGGGTTCTTCSEEEEEE-SCCCCG---------------------------GGTTCTTCCEEECCSS
T ss_pred             CEEECCCCccCC-ChhhccCCcccEeecCC-cccCch---------------------------hhccCCCCCEEECcCC
Confidence            777777766654 23455555566655532 221110                           1223555666666666


Q ss_pred             cccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCCh
Q 036216          371 ILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPS  450 (695)
Q Consensus       371 ~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  450 (695)
                      .+.+.  ..+..+++|++|++++|.+.+..|  +..+++|++|++++|++.+.  ..+..+++|+.|++++|.+.+..+ 
T Consensus       188 ~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-  260 (466)
T 1o6v_A          188 KVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP-  260 (466)
T ss_dssp             CCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-
T ss_pred             cCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh-
Confidence            55532  235566666677776666664333  55566777777777766532  346666777777777776644333 


Q ss_pred             hhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCC
Q 036216          451 WFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGP  530 (695)
Q Consensus       451 ~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~  530 (695)
                       + ..+++|+.|++++|.+++..+  +..+++|+.|++++|++++..|  +..+++                        
T Consensus       261 -~-~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~------------------------  310 (466)
T 1o6v_A          261 -L-SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKN------------------------  310 (466)
T ss_dssp             -G-TTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTT------------------------
T ss_pred             -h-hcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCC------------------------
Confidence             2 256777777777777765433  6677777777777777764322  333333                        


Q ss_pred             CccccceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCC
Q 036216          531 GTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSV  610 (695)
Q Consensus       531 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~  610 (695)
                                              |+.|++++|++++..|  +..+++|++|++++|++++.  ..++.+++|+.|++++
T Consensus       311 ------------------------L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~  362 (466)
T 1o6v_A          311 ------------------------LTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGH  362 (466)
T ss_dssp             ------------------------CSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCS
T ss_pred             ------------------------CCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCC
Confidence                                    3677777777776554  66777888888888877743  3577788888888888


Q ss_pred             CcccccCCcCCcCCCCCCEEEcccCcCcc
Q 036216          611 NKFTGEIPQSMSSLTFLNHLNLSNNYLTG  639 (695)
Q Consensus       611 n~l~~~~p~~l~~l~~L~~L~ls~N~l~~  639 (695)
                      |++++..|  +..+++|+.|++++|++++
T Consensus       363 n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          363 NQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             SCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             CccCccch--hhcCCCCCEEeccCCcccC
Confidence            88876665  6777888888888888776

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=5.6e-35  Score=294.90  Aligned_cols=259  Identities=29%  Similarity=0.538  Sum_probs=236.0

Q ss_pred             cccceeecccccccC--CCCccccCCCCCCEEeCCC-CcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcE
Q 036216          360 MKLKFLFLDRNILQG--KLPDCWMSYQNLMALDLSN-NKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVT  436 (695)
Q Consensus       360 ~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~ls~-n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  436 (695)
                      .+++.|++++|.+.+  .+|..+..+++|++|++++ |.+.+.+|..|..+++|++|++++|.+.+..|..+..+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            467788888888887  7888899999999999995 8888888989999999999999999999889999999999999


Q ss_pred             EEcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCccccCCC-CCCEEeCCCCcCcccCChhhhhcccCcccCCCCC
Q 036216          437 LDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLA-FLQILDLADNNLSGTIPNCIHNLTAMATVNPFTG  515 (695)
Q Consensus       437 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~  515 (695)
                      |++++|.+.+.+|..+. .+++|++|++++|++++.+|..+..++ +|++|++++|++++.+|..+..++ |        
T Consensus       130 L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L--------  199 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-L--------  199 (313)
T ss_dssp             EECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-C--------
T ss_pred             EeCCCCccCCcCChHHh-cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-c--------
Confidence            99999999888888876 699999999999999989999999998 999999999999999998887664 4        


Q ss_pred             CcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCc
Q 036216          516 NAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPE  595 (695)
Q Consensus       516 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~  595 (695)
                                                              +.|++++|++++..|..|..+++|++|++++|.+++.+|.
T Consensus       200 ----------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  239 (313)
T 1ogq_A          200 ----------------------------------------AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK  239 (313)
T ss_dssp             ----------------------------------------SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG
T ss_pred             ----------------------------------------cEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc
Confidence                                                    8899999999999999999999999999999999977666


Q ss_pred             cccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEEcccCcCcccCCCCcccCccccccccCC-cccCCCCCCCCC
Q 036216          596 TIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSSTQLQSFNASCFLGN-NLCGAPLPKNCT  670 (695)
Q Consensus       596 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~iP~~~~~~~~~~~~~~~n-~l~~~~~~~~c~  670 (695)
                       +..+++|+.|++++|++++.+|..+..+++|++|++++|+++|.+|...++..+....+.+| .+||.|++ .|.
T Consensus       240 -~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C~  313 (313)
T 1ogq_A          240 -VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-ACT  313 (313)
T ss_dssp             -CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CCC
T ss_pred             -ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CCC
Confidence             88999999999999999999999999999999999999999999999989999999999999 69999877 573

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=4.1e-34  Score=307.76  Aligned_cols=317  Identities=20%  Similarity=0.150  Sum_probs=153.1

Q ss_pred             cEEEccCCCCCCCCCccccCCCCCCEEEcccCCCccccChHHhhcccccceeeccccccccccc-CccccCccceEeccc
Q 036216          242 IELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELT-NLTKASQLSYLSLIA  320 (695)
Q Consensus       242 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~L~~L~l~~  320 (695)
                      +.++.++..+.. +|..+  .++++.|++++|.+. .++...+..+++|++|++++|.+.+..+ .+..+++|++|++++
T Consensus        14 ~~v~c~~~~l~~-ip~~~--~~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~   89 (477)
T 2id5_A           14 RAVLCHRKRFVA-VPEGI--PTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS   89 (477)
T ss_dssp             TEEECCSCCCSS-CCSCC--CTTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCc-CCCCC--CCCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence            345555554442 33322  245666777766666 3433344556666666666666665433 455555666666665


Q ss_pred             ccceeecCCC---CCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeCCCCccc
Q 036216          321 NNFSGSLPLI---SSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFT  397 (695)
Q Consensus       321 n~~~~~~~~~---~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~  397 (695)
                      |.+.+..+..   +++|++|++++|.+.+..+..    |..+++|+.|++++|.+.+..+..|..+++|++|++++|.++
T Consensus        90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  165 (477)
T 2id5_A           90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYM----FQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT  165 (477)
T ss_dssp             SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTT----TTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS
T ss_pred             CcCCccCcccccCCCCCCEEECCCCccccCChhH----ccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc
Confidence            5555433222   234444444444444322221    223444444444444444444444444444444444444444


Q ss_pred             ccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCccc
Q 036216          398 GNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTEL  477 (695)
Q Consensus       398 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l  477 (695)
                      +..+..+..+++|+.|++++|.+.+..+..|..+++|+.|++++|...+.+|...+ ...+|+.|++++|++++..+..+
T Consensus       166 ~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~  244 (477)
T 2id5_A          166 SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL-YGLNLTSLSITHCNLTAVPYLAV  244 (477)
T ss_dssp             SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTT-TTCCCSEEEEESSCCCSCCHHHH
T ss_pred             ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccc-cCccccEEECcCCcccccCHHHh
Confidence            33333344444444444444444444444444444444444444444343433332 22344444444444442222333


Q ss_pred             cCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccE
Q 036216          478 CDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRI  557 (695)
Q Consensus       478 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  557 (695)
                      ..+++|                                                                        +.
T Consensus       245 ~~l~~L------------------------------------------------------------------------~~  252 (477)
T 2id5_A          245 RHLVYL------------------------------------------------------------------------RF  252 (477)
T ss_dssp             TTCTTC------------------------------------------------------------------------CE
T ss_pred             cCcccc------------------------------------------------------------------------Ce
Confidence            444444                                                                        45


Q ss_pred             EEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEEcccCcC
Q 036216          558 IDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYL  637 (695)
Q Consensus       558 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l  637 (695)
                      |++++|.+++..+..|..+++|++|+|++|++++..|..|+.+++|+.|+|++|++++..+..|..+++|++|++++|++
T Consensus       253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  332 (477)
T 2id5_A          253 LNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL  332 (477)
T ss_dssp             EECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred             eECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence            55555555544455555555555555555555555555555555555555555555544444455555555555555555


Q ss_pred             cc
Q 036216          638 TG  639 (695)
Q Consensus       638 ~~  639 (695)
                      .+
T Consensus       333 ~c  334 (477)
T 2id5_A          333 AC  334 (477)
T ss_dssp             EC
T ss_pred             cC
Confidence            43

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=7.6e-33  Score=289.54  Aligned_cols=309  Identities=21%  Similarity=0.181  Sum_probs=196.1

Q ss_pred             CCCCcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEE
Q 036216            2 LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHL   81 (695)
Q Consensus         2 l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   81 (695)
                      ++++++|+++++.++.+|...|..+++|++|++++|.+.+. .+..+..+++|++|++++|.+++..|..|.++++|++|
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEI-DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCccccc-ChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            46677777777777777776677777777777777777764 44567777777777777777776667777777777777


Q ss_pred             eCCCCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEcc
Q 036216           82 GLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALA  161 (695)
Q Consensus        82 ~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~  161 (695)
                      ++++|.++...+..|+++++|++|++++|.+.+..+..++++++|++|++++|++.+..       .+.++. |+.++++
T Consensus       123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-------~~~l~~-L~~L~l~  194 (390)
T 3o6n_A          123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-------LSLIPS-LFHANVS  194 (390)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC-------GGGCTT-CSEEECC
T ss_pred             ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc-------cccccc-cceeecc
Confidence            77777777554455677777777777777777666667777777777777777776532       222333 6677777


Q ss_pred             CcccccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCCCCc
Q 036216          162 SSSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQL  241 (695)
Q Consensus       162 ~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L  241 (695)
                      +|.+.+.     ...++|++|++++|.+.              .++.   ...++|+.|++++|.+++.  ..+..+++|
T Consensus       195 ~n~l~~~-----~~~~~L~~L~l~~n~l~--------------~~~~---~~~~~L~~L~l~~n~l~~~--~~l~~l~~L  250 (390)
T 3o6n_A          195 YNLLSTL-----AIPIAVEELDASHNSIN--------------VVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGL  250 (390)
T ss_dssp             SSCCSEE-----ECCSSCSEEECCSSCCC--------------EEEC---CCCSSCCEEECCSSCCCCC--GGGGGCTTC
T ss_pred             ccccccc-----CCCCcceEEECCCCeee--------------eccc---cccccccEEECCCCCCccc--HHHcCCCCc
Confidence            6666542     23346667777766664              2221   1235666666666666543  345556666


Q ss_pred             cEEEccCCCCCCCCCccccCCCCCCEEEcccCCCccccChHHhhcccccceeecccccccccccCccccCccceEecccc
Q 036216          242 IELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIAN  321 (695)
Q Consensus       242 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n  321 (695)
                      ++|++++|.+.+..|..+..+++|++|++++|.+. .+|..+ ..+++|+.|++++|.+.+.++.+..+++|++|++++|
T Consensus       251 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N  328 (390)
T 3o6n_A          251 VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYG-QPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHN  328 (390)
T ss_dssp             SEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSS-SCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSS
T ss_pred             cEEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCccc-CCCCCCCEEECCCCcceecCccccccCcCCEEECCCC
Confidence            66666666666655666666666666666666665 333322 3456666666666666554445555566666666666


Q ss_pred             cceeecCCCCCCCcEEEccCCcCC
Q 036216          322 NFSGSLPLISSNLTVLELSGNSLS  345 (695)
Q Consensus       322 ~~~~~~~~~~~~L~~L~l~~n~l~  345 (695)
                      ++.......+++|+.|++++|++.
T Consensus       329 ~i~~~~~~~~~~L~~L~l~~N~~~  352 (390)
T 3o6n_A          329 SIVTLKLSTHHTLKNLTLSHNDWD  352 (390)
T ss_dssp             CCCCCCCCTTCCCSEEECCSSCEE
T ss_pred             ccceeCchhhccCCEEEcCCCCcc
Confidence            655444444455555555555544

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=5.6e-32  Score=282.96  Aligned_cols=333  Identities=17%  Similarity=0.193  Sum_probs=204.2

Q ss_pred             CCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCCCCccEEEccCCCCCCC
Q 036216          175 QFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSR  254 (695)
Q Consensus       175 ~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~  254 (695)
                      .+++++.|++++|.+.              .+|...|..+++|++|++++|.+....+..+..+++|++|++++|.+.+.
T Consensus        43 ~l~~l~~l~l~~~~l~--------------~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~  108 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMR--------------KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL  108 (390)
T ss_dssp             GGCCCSEEEEESCEES--------------EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             ccCCceEEEecCCchh--------------hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcC
Confidence            3567788888887775              67776778888888888888887766666666666677777766666666


Q ss_pred             CCccccCCCCCCEEEcccCCCccccChHHhhcccccceeecccccccccccCccccCccceEecccccceeecCCCCCCC
Q 036216          255 FPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLISSNL  334 (695)
Q Consensus       255 ~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L  334 (695)
                      .|..+..+++|++|++++|.+. .+|..++..+++|++|++++|.+.+                                
T Consensus       109 ~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~--------------------------------  155 (390)
T 3o6n_A          109 PPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLER--------------------------------  155 (390)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCB--------------------------------
T ss_pred             CHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCc--------------------------------
Confidence            5655666666666666666655 4554444444444444444444332                                


Q ss_pred             cEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEE
Q 036216          335 TVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLH  414 (695)
Q Consensus       335 ~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~  414 (695)
                                                              ..+..+..+++|++|++++|.+++.   .+..+++|+.|+
T Consensus       156 ----------------------------------------~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~  192 (390)
T 3o6n_A          156 ----------------------------------------IEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHAN  192 (390)
T ss_dssp             ----------------------------------------CCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEE
T ss_pred             ----------------------------------------cChhhccCCCCCCEEECCCCcCCcc---ccccccccceee
Confidence                                                    2222333334444444444444321   122334444444


Q ss_pred             CcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCc
Q 036216          415 LRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLS  494 (695)
Q Consensus       415 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~  494 (695)
                      +++|.+.+.     ...++|++|++++|.+. .+|..   ..++|+.|++++|.+++.  ..+..+++|++|++++|+++
T Consensus       193 l~~n~l~~~-----~~~~~L~~L~l~~n~l~-~~~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~  261 (390)
T 3o6n_A          193 VSYNLLSTL-----AIPIAVEELDASHNSIN-VVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELE  261 (390)
T ss_dssp             CCSSCCSEE-----ECCSSCSEEECCSSCCC-EEECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred             ccccccccc-----CCCCcceEEECCCCeee-ecccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCC
Confidence            444444321     12234555555555542 22221   234566666666666543  35666677777777777777


Q ss_pred             ccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCccccccCCcccc
Q 036216          495 GTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLT  574 (695)
Q Consensus       495 ~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~  574 (695)
                      +..|..+..+++|                                                +.|++++|++++ +|..+.
T Consensus       262 ~~~~~~~~~l~~L------------------------------------------------~~L~L~~n~l~~-~~~~~~  292 (390)
T 3o6n_A          262 KIMYHPFVKMQRL------------------------------------------------ERLYISNNRLVA-LNLYGQ  292 (390)
T ss_dssp             EEESGGGTTCSSC------------------------------------------------CEEECCSSCCCE-EECSSS
T ss_pred             CcChhHccccccC------------------------------------------------CEEECCCCcCcc-cCcccC
Confidence            6666666655554                                                666777777764 455567


Q ss_pred             CCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEEcccCcCcccCCCCcccCcccccc
Q 036216          575 NLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSSTQLQSFNASC  654 (695)
Q Consensus       575 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~iP~~~~~~~~~~~~  654 (695)
                      .+++|++|++++|+++ .+|..++.+++|+.|++++|.++. +|  +..+++|++|++++|++.+.-.. ..+..+....
T Consensus       293 ~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~-~~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~  367 (390)
T 3o6n_A          293 PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPA  367 (390)
T ss_dssp             CCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTT
T ss_pred             CCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccce-eC--chhhccCCEEEcCCCCccchhHH-HHHHHHHhhc
Confidence            7889999999999998 677778899999999999999984 44  67788999999999999864221 2334444444


Q ss_pred             ccCC-cccC
Q 036216          655 FLGN-NLCG  662 (695)
Q Consensus       655 ~~~n-~l~~  662 (695)
                      +.++ ..|.
T Consensus       368 ~~~~~~~c~  376 (390)
T 3o6n_A          368 VDDADQHCK  376 (390)
T ss_dssp             BCCCCSCCC
T ss_pred             ccccCceec
Confidence            4444 3444

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=1.4e-32  Score=277.43  Aligned_cols=253  Identities=28%  Similarity=0.455  Sum_probs=229.9

Q ss_pred             CCCcEEEccCCcCCC--ccchhhhhhhhhccccceeeccc-ccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCC
Q 036216          332 SNLTVLELSGNSLSG--PIFHFLCYTINETMKLKFLFLDR-NILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLS  408 (695)
Q Consensus       332 ~~L~~L~l~~n~l~~--~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~  408 (695)
                      ..++.|++++|.+.+  .++..    +..+++|++|++++ |.+.+.+|..|..+++|++|++++|.+++..|..+..++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~----l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~  125 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSS----LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK  125 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGG----GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT
T ss_pred             ceEEEEECCCCCccCCcccChh----HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCC
Confidence            467888888888887  56554    44689999999995 899989999999999999999999999999999999999


Q ss_pred             CCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCC-CCcEEEcCCCcccccCCccccCCCCCCEEe
Q 036216          409 SLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFS-RMVLLILRSNNFDGPLPTELCDLAFLQILD  487 (695)
Q Consensus       409 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~  487 (695)
                      +|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+. .++ +|+.|++++|++++.+|..+..++ |++|+
T Consensus       126 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~  203 (313)
T 1ogq_A          126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVD  203 (313)
T ss_dssp             TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG-CCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEE
T ss_pred             CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHh-hhhhcCcEEECcCCeeeccCChHHhCCc-ccEEE
Confidence            999999999999999999999999999999999999889999887 576 999999999999999999999987 99999


Q ss_pred             CCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCccccc
Q 036216          488 LADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSG  567 (695)
Q Consensus       488 L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~  567 (695)
                      +++|++++..|..+..+++|                                                +.|++++|++++
T Consensus       204 Ls~N~l~~~~~~~~~~l~~L------------------------------------------------~~L~L~~N~l~~  235 (313)
T 1ogq_A          204 LSRNMLEGDASVLFGSDKNT------------------------------------------------QKIHLAKNSLAF  235 (313)
T ss_dssp             CCSSEEEECCGGGCCTTSCC------------------------------------------------SEEECCSSEECC
T ss_pred             CcCCcccCcCCHHHhcCCCC------------------------------------------------CEEECCCCceee
Confidence            99999998888888777666                                                889999999997


Q ss_pred             cCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEEcccCc-Cccc
Q 036216          568 TLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNY-LTGK  640 (695)
Q Consensus       568 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~-l~~~  640 (695)
                      .+|. +..+++|++|++++|++++.+|..|+.+++|+.|++++|++++.+|.. ..+++|+.+++++|+ ++|.
T Consensus       236 ~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~  307 (313)
T 1ogq_A          236 DLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             BGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEEST
T ss_pred             ecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCC
Confidence            7665 888999999999999999999999999999999999999999999987 889999999999998 6664

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=1.2e-31  Score=295.90  Aligned_cols=329  Identities=22%  Similarity=0.209  Sum_probs=266.9

Q ss_pred             CCCCCEEEcccCCCccccChHHhhcccccceeeccccccccccc-CccccCccceEecccccceeecCCC---CCCCcEE
Q 036216          262 QKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELT-NLTKASQLSYLSLIANNFSGSLPLI---SSNLTVL  337 (695)
Q Consensus       262 ~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L  337 (695)
                      +.+++.++++++.+. .+|..++..+++|+.|++++|.+.+..+ .+..+++|++|++++|.+.+..|..   +++|++|
T Consensus        50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            456777788777776 6777777778888888888888877665 6777788888888888887766544   4678888


Q ss_pred             EccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcC
Q 036216          338 ELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRK  417 (695)
Q Consensus       338 ~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~  417 (695)
                      ++++|.+++..+..    |..+++|+.|++++|.+++..|..|..+++|++|++++|.+++..   +..+++|+.|++++
T Consensus       129 ~L~~n~l~~l~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~  201 (597)
T 3oja_B          129 VLERNDLSSLPRGI----FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSY  201 (597)
T ss_dssp             ECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCS
T ss_pred             EeeCCCCCCCCHHH----hccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhccc
Confidence            88888887543333    346899999999999999888888999999999999999998642   56679999999999


Q ss_pred             CcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCcccC
Q 036216          418 NRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTI  497 (695)
Q Consensus       418 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~  497 (695)
                      |.+.+.     ....+|+.|++++|.+. .++..   ..++|+.|++++|.+++.  ..+..+++|+.|++++|.+++..
T Consensus       202 n~l~~l-----~~~~~L~~L~ls~n~l~-~~~~~---~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~  270 (597)
T 3oja_B          202 NLLSTL-----AIPIAVEELDASHNSIN-VVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIM  270 (597)
T ss_dssp             SCCSEE-----ECCTTCSEEECCSSCCC-EEECS---CCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEE
T ss_pred             Cccccc-----cCCchhheeeccCCccc-ccccc---cCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCC
Confidence            998743     34578999999999984 44433   357899999999999873  67899999999999999999888


Q ss_pred             ChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCC
Q 036216          498 PNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLK  577 (695)
Q Consensus       498 p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~  577 (695)
                      |..|..+++|                                                +.|+|++|.+++ +|..+..++
T Consensus       271 ~~~~~~l~~L------------------------------------------------~~L~Ls~N~l~~-l~~~~~~l~  301 (597)
T 3oja_B          271 YHPFVKMQRL------------------------------------------------ERLYISNNRLVA-LNLYGQPIP  301 (597)
T ss_dssp             SGGGTTCSSC------------------------------------------------CEEECTTSCCCE-EECSSSCCT
T ss_pred             HHHhcCccCC------------------------------------------------CEEECCCCCCCC-CCcccccCC
Confidence            9888887776                                                889999999996 577778899


Q ss_pred             CCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEEcccCcCcccCCCCcccCccccccccC
Q 036216          578 AVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSSTQLQSFNASCFLG  657 (695)
Q Consensus       578 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~iP~~~~~~~~~~~~~~~  657 (695)
                      +|++|+|++|.++ .+|..++.+++|+.|+|++|.+++. |  +..+++|++|++++|++.+..+. ..+..+....+.+
T Consensus       302 ~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~  376 (597)
T 3oja_B          302 TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDD  376 (597)
T ss_dssp             TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCC
T ss_pred             CCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhcccc
Confidence            9999999999999 7888899999999999999999854 3  67789999999999999876432 2345555556666


Q ss_pred             C-cccCC
Q 036216          658 N-NLCGA  663 (695)
Q Consensus       658 n-~l~~~  663 (695)
                      + ..|+.
T Consensus       377 ~~~~C~~  383 (597)
T 3oja_B          377 ADQHCKI  383 (597)
T ss_dssp             CCCCCCT
T ss_pred             ccccCCc
Confidence            6 67765

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=5.1e-32  Score=298.73  Aligned_cols=308  Identities=21%  Similarity=0.177  Sum_probs=185.8

Q ss_pred             CCCcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEe
Q 036216            3 PSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLG   82 (695)
Q Consensus         3 ~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   82 (695)
                      ++++.+++++|.+..+|+..|..+++|++|+|++|.+++. .|..|..+++|++|+|++|.+++..|..|.++++|++|+
T Consensus        51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEI-DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCC-ChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence            5567777777777777766667777777777777777664 445666777777777777777766666677777777777


Q ss_pred             CCCCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccC
Q 036216           83 LPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALAS  162 (695)
Q Consensus        83 L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~  162 (695)
                      +++|.+++..+..|+++++|++|++++|.+.+..|..|+.+++|++|++++|.+.+..       .+.++. |+.|++++
T Consensus       130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-------~~~l~~-L~~L~l~~  201 (597)
T 3oja_B          130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-------LSLIPS-LFHANVSY  201 (597)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC-------GGGCTT-CSEEECCS
T ss_pred             eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC-------hhhhhh-hhhhhccc
Confidence            7777777555555677777777777777777666666777777777777777766532       122333 66666666


Q ss_pred             cccccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCCCCcc
Q 036216          163 SSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLI  242 (695)
Q Consensus       163 n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~  242 (695)
                      |.+.+.     ...+.|+.|++++|.+.              .++.   ...++|+.|++++|.+++.  ..+..+++|+
T Consensus       202 n~l~~l-----~~~~~L~~L~ls~n~l~--------------~~~~---~~~~~L~~L~L~~n~l~~~--~~l~~l~~L~  257 (597)
T 3oja_B          202 NLLSTL-----AIPIAVEELDASHNSIN--------------VVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLV  257 (597)
T ss_dssp             SCCSEE-----ECCTTCSEEECCSSCCC--------------EEEC---SCCSCCCEEECCSSCCCCC--GGGGGCTTCS
T ss_pred             Cccccc-----cCCchhheeeccCCccc--------------cccc---ccCCCCCEEECCCCCCCCC--hhhccCCCCC
Confidence            665542     23445666666666654              1211   1124566666666665542  3455555666


Q ss_pred             EEEccCCCCCCCCCccccCCCCCCEEEcccCCCccccChHHhhcccccceeecccccccccccCccccCccceEeccccc
Q 036216          243 ELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANN  322 (695)
Q Consensus       243 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~  322 (695)
                      .|++++|.+.+..|..+..+++|+.|++++|.+. .+|..+ ..+++|+.|++++|.+...++.+..+++|++|++++|.
T Consensus       258 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~-~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~  335 (597)
T 3oja_B          258 EVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYG-QPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS  335 (597)
T ss_dssp             EEECCSSCCCEEESGGGTTCSSCCEEECTTSCCC-EEECSS-SCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSC
T ss_pred             EEECCCCccCCCCHHHhcCccCCCEEECCCCCCC-CCCccc-ccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCC
Confidence            6666666665555555666666666666666555 233322 33555666666666655444445555555555555555


Q ss_pred             ceeecCCCCCCCcEEEccCCcCC
Q 036216          323 FSGSLPLISSNLTVLELSGNSLS  345 (695)
Q Consensus       323 ~~~~~~~~~~~L~~L~l~~n~l~  345 (695)
                      +.+.....+++|+.|++++|++.
T Consensus       336 l~~~~~~~~~~L~~L~l~~N~~~  358 (597)
T 3oja_B          336 IVTLKLSTHHTLKNLTLSHNDWD  358 (597)
T ss_dssp             CCCCCCCTTCCCSEEECCSSCEE
T ss_pred             CCCcChhhcCCCCEEEeeCCCCC
Confidence            55444444445555555555443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.98  E-value=2.7e-31  Score=273.37  Aligned_cols=305  Identities=25%  Similarity=0.322  Sum_probs=208.4

Q ss_pred             CCCCccEEEccCCCCCCCCCccccCCCCCCEEEcccCCCccccChHHhhcccccceeecccccccccccCccccCccceE
Q 036216          237 PPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYL  316 (695)
Q Consensus       237 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L  316 (695)
                      .++++++|+++++.+... + .+..+++|++|++++|.+. .++.  +..+++|++|++++|.+.. ++.+..+      
T Consensus        42 ~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~-~~~~~~l------  109 (347)
T 4fmz_A           42 ELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITD-ISALQNL------  109 (347)
T ss_dssp             HHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCC-CGGGTTC------
T ss_pred             hcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccC-chHHcCC------
Confidence            445666666666665432 2 2555666666666666655 3333  4455666666666665553 2333333      


Q ss_pred             ecccccceeecCCCCCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeCCCCcc
Q 036216          317 SLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKF  396 (695)
Q Consensus       317 ~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~  396 (695)
                                     ++|++|++++|.+.+..+      +..+++|+.|++++|......+ .+..+++|++|++++|.+
T Consensus       110 ---------------~~L~~L~l~~n~i~~~~~------~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~  167 (347)
T 4fmz_A          110 ---------------TNLRELYLNEDNISDISP------LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKV  167 (347)
T ss_dssp             ---------------TTCSEEECTTSCCCCCGG------GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCC
T ss_pred             ---------------CcCCEEECcCCcccCchh------hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCc
Confidence                           445555555555543211      3357778888888776553433 377788888888888887


Q ss_pred             cccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCcc
Q 036216          397 TGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTE  476 (695)
Q Consensus       397 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~  476 (695)
                      .+..+  +..+++|++|++++|.+.+..+  +..+++|+.|++++|.+.+..+  + ..+++|++|++++|++++..+  
T Consensus       168 ~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~-~~~~~L~~L~l~~n~l~~~~~--  238 (347)
T 4fmz_A          168 KDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--V-ANMTRLNSLKIGNNKITDLSP--  238 (347)
T ss_dssp             CCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--G-GGCTTCCEEECCSSCCCCCGG--
T ss_pred             CCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--h-hcCCcCCEEEccCCccCCCcc--
Confidence            74332  7778888888888888774433  7778888888888888754333  3 368888888888888875433  


Q ss_pred             ccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhccccc
Q 036216          477 LCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVR  556 (695)
Q Consensus       477 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  556 (695)
                      +..+++|++|++++|++++ + ..+..+++                                                |+
T Consensus       239 ~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~------------------------------------------------L~  268 (347)
T 4fmz_A          239 LANLSQLTWLEIGTNQISD-I-NAVKDLTK------------------------------------------------LK  268 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCC-C-GGGTTCTT------------------------------------------------CC
T ss_pred             hhcCCCCCEEECCCCccCC-C-hhHhcCCC------------------------------------------------cC
Confidence            7788888888888888774 2 23333333                                                47


Q ss_pred             EEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEEcccCc
Q 036216          557 IIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNY  636 (695)
Q Consensus       557 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~  636 (695)
                      .|++++|++++.  ..+..+++|++|++++|.+++..|+.++.+++|+.|++++|++++..|  +..+++|++|++++|+
T Consensus       269 ~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          269 MLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQV  344 (347)
T ss_dssp             EEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC-
T ss_pred             EEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhc
Confidence            888888888854  457888999999999999988888888999999999999999986655  7888999999999998


Q ss_pred             Cc
Q 036216          637 LT  638 (695)
Q Consensus       637 l~  638 (695)
                      ++
T Consensus       345 i~  346 (347)
T 4fmz_A          345 IK  346 (347)
T ss_dssp             --
T ss_pred             cc
Confidence            75

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.98  E-value=3.1e-30  Score=265.48  Aligned_cols=300  Identities=24%  Similarity=0.311  Sum_probs=159.5

Q ss_pred             CCCcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEe
Q 036216            3 PSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLG   82 (695)
Q Consensus         3 ~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   82 (695)
                      ++|++|+++++.+..++.  +..+++|++|++++|.+++  ++. +..+++|++|++++|.++..  ..+..+++|++|+
T Consensus        44 ~~L~~L~l~~~~i~~~~~--~~~~~~L~~L~l~~n~i~~--~~~-~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~  116 (347)
T 4fmz_A           44 ESITKLVVAGEKVASIQG--IEYLTNLEYLNLNGNQITD--ISP-LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELY  116 (347)
T ss_dssp             TTCSEEECCSSCCCCCTT--GGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEE
T ss_pred             ccccEEEEeCCccccchh--hhhcCCccEEEccCCcccc--chh-hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEE
Confidence            456666666666665543  5556666666666666655  333 55666666666666666532  2466666666666


Q ss_pred             CCCCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccC
Q 036216           83 LPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALAS  162 (695)
Q Consensus        83 L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~  162 (695)
                      +++|.+++. +. +..+++|++|++++|...... ..+..+++|++|++++|.+.+..+      +..+.. |++|++++
T Consensus       117 l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~------~~~l~~-L~~L~l~~  186 (347)
T 4fmz_A          117 LNEDNISDI-SP-LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP------IANLTD-LYSLSLNY  186 (347)
T ss_dssp             CTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG------GGGCTT-CSEEECTT
T ss_pred             CcCCcccCc-hh-hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh------hccCCC-CCEEEccC
Confidence            666666543 22 566666666666666443222 235666666666666665544321      222333 55555555


Q ss_pred             cccccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCCCCcc
Q 036216          163 SSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLI  242 (695)
Q Consensus       163 n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~  242 (695)
                      |.+.+..+  +..+++|+.|++++|.+.              .++.  +..+++|+.|++++|.+               
T Consensus       187 n~l~~~~~--~~~l~~L~~L~l~~n~l~--------------~~~~--~~~~~~L~~L~l~~n~l---------------  233 (347)
T 4fmz_A          187 NQIEDISP--LASLTSLHYFTAYVNQIT--------------DITP--VANMTRLNSLKIGNNKI---------------  233 (347)
T ss_dssp             SCCCCCGG--GGGCTTCCEEECCSSCCC--------------CCGG--GGGCTTCCEEECCSSCC---------------
T ss_pred             Cccccccc--ccCCCccceeecccCCCC--------------CCch--hhcCCcCCEEEccCCcc---------------
Confidence            55544322  444555555555555443              1111  34444555555555444               


Q ss_pred             EEEccCCCCCCCCCccccCCCCCCEEEcccCCCccccChHHhhcccccceeecccccccccccCccccCccceEeccccc
Q 036216          243 ELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANN  322 (695)
Q Consensus       243 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~  322 (695)
                               .+..+  +..+++|++|++++|.+. .++  .+..+++|+.|++++|.+.+. +.+..+++|++|++++|+
T Consensus       234 ---------~~~~~--~~~l~~L~~L~l~~n~l~-~~~--~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L~~n~  298 (347)
T 4fmz_A          234 ---------TDLSP--LANLSQLTWLEIGTNQIS-DIN--AVKDLTKLKMLNVGSNQISDI-SVLNNLSQLNSLFLNNNQ  298 (347)
T ss_dssp             ---------CCCGG--GTTCTTCCEEECCSSCCC-CCG--GGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC
T ss_pred             ---------CCCcc--hhcCCCCCEEECCCCccC-CCh--hHhcCCCcCEEEccCCccCCC-hhhcCCCCCCEEECcCCc
Confidence                     43322  445555555555555554 222  134455555555555555532 344455555555555555


Q ss_pred             ceeecCC---CCCCCcEEEccCCcCCCccchhhhhhhhhccccceeeccccccc
Q 036216          323 FSGSLPL---ISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQ  373 (695)
Q Consensus       323 ~~~~~~~---~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  373 (695)
                      +.+..+.   .+++|+.|++++|++++..+      +..+++|++|++++|.++
T Consensus       299 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          299 LGNEDMEVIGGLTNLTTLFLSQNHITDIRP------LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             CCGGGHHHHHTCTTCSEEECCSSSCCCCGG------GGGCTTCSEESSSCC---
T ss_pred             CCCcChhHhhccccCCEEEccCCccccccC------hhhhhccceeehhhhccc
Confidence            5544332   24566777777777665433      334778888888887764

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=9.4e-34  Score=304.02  Aligned_cols=373  Identities=19%  Similarity=0.165  Sum_probs=225.3

Q ss_pred             CCCCcEEEcCCCcCCCCCccC-CCCCCCCCEEECCCCCCCCC---CCchhhcCCCCCCEEEcCCCcCcccCCccC-CCCC
Q 036216            2 LPSLVELDLSNCQLHHFPQLP-VANFSTLTTLDLSHNQFDNS---FVPAWVFGLSRLHFLNLGYNNFQGPIPEGL-QNLT   76 (695)
Q Consensus         2 l~~L~~L~ls~~~l~~~~~~~-~~~l~~L~~L~Ls~n~i~~~---~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~   76 (695)
                      .++|++|+++++.++..+... +..+++|++|++++|.+++.   .++..+..+++|++|++++|.+....+..+ ..++
T Consensus         2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~   81 (461)
T 1z7x_W            2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   81 (461)
T ss_dssp             CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence            467888899888887765433 67788888899988888742   146667788888888888888875433333 3344


Q ss_pred             ----CCCEEeCCCCCCCC----CchhhhcCCCCCCEEEcccCcCCcccchhhc-----CCCCCCEEEccCCcCccccchh
Q 036216           77 ----SLKHLGLPFNHFSS----SVPKWFDRLTHLEHLSLSYNSLEGRIPRSMA-----RLCNLRRLYLGGAKLNQEISEI  143 (695)
Q Consensus        77 ----~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~~~~~~  143 (695)
                          +|++|++++|.++.    .++..+..+++|++|++++|.+....+..+.     ..++|++|++++|++++.....
T Consensus        82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~  161 (461)
T 1z7x_W           82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP  161 (461)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence                68888888888874    4577788888888888888887754443332     3567888888888887765544


Q ss_pred             hhhhhcccccccceEEccCcccccccchhcC-----CCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCC
Q 036216          144 LEIFSGCVSNGLESLALASSSISGHLTDQLG-----QFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLS  218 (695)
Q Consensus       144 ~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~-----~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~  218 (695)
                      +...+...+. |++|++++|.+.+..+..+.     ..++|++|++++|.+++...         ..++. .+..+++|+
T Consensus       162 l~~~l~~~~~-L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~---------~~l~~-~l~~~~~L~  230 (461)
T 1z7x_W          162 LASVLRAKPD-FKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC---------RDLCG-IVASKASLR  230 (461)
T ss_dssp             HHHHHHHCTT-CCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHH---------HHHHH-HHHHCTTCC
T ss_pred             HHHHHhhCCC-CCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHH---------HHHHH-HHHhCCCcc
Confidence            4445555555 77888877777655444443     25577777777777652100         01222 455667777


Q ss_pred             EEEcccccceeecCCCCCCCCCccEEEccCCCCCCCCCccccCCCCCCEEEcccCCCccc----cChHHhhcccccceee
Q 036216          219 VFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGT----FPNRLLKSASQLYLLD  294 (695)
Q Consensus       219 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~----~~~~~~~~l~~L~~L~  294 (695)
                      .|++++|.+.......+                   .+..+..+++|++|++++|.+++.    ++.. +..+++|++|+
T Consensus       231 ~L~Ls~n~l~~~~~~~l-------------------~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~-l~~~~~L~~L~  290 (461)
T 1z7x_W          231 ELALGSNKLGDVGMAEL-------------------CPGLLHPSSRLRTLWIWECGITAKGCGDLCRV-LRAKESLKELS  290 (461)
T ss_dssp             EEECCSSBCHHHHHHHH-------------------HHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH-HHHCTTCCEEE
T ss_pred             EEeccCCcCChHHHHHH-------------------HHHHhcCCCCceEEECcCCCCCHHHHHHHHHH-HhhCCCcceEE
Confidence            77777766553211100                   012223456777777777766532    2322 34466677777


Q ss_pred             ccccccccccc-CccccCccceEecccccceeecCCCCCCCcEEEccCCcCCCccchhhhhhhhhccccceeeccccccc
Q 036216          295 LGHNQIHGELT-NLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQ  373 (695)
Q Consensus       295 l~~n~l~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  373 (695)
                      +++|.+..... .+..                .+....++|+.|++++|.+++.....+...+..+++|++|++++|.++
T Consensus       291 Ls~n~i~~~~~~~l~~----------------~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~  354 (461)
T 1z7x_W          291 LAGNELGDEGARLLCE----------------TLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE  354 (461)
T ss_dssp             CTTCCCHHHHHHHHHH----------------HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCH
T ss_pred             CCCCCCchHHHHHHHH----------------HhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccc
Confidence            77776643221 1110                011112356666666666655444444455555666666666666665


Q ss_pred             CCCCccccC-----CCCCCEEeCCCCcccc----cCCccccCCCCCcEEECcCCcce
Q 036216          374 GKLPDCWMS-----YQNLMALDLSNNKFTG----NLPTSLGSLSSLVSLHLRKNRLS  421 (695)
Q Consensus       374 ~~~~~~~~~-----~~~L~~L~ls~n~~~~----~~~~~~~~l~~L~~L~l~~n~l~  421 (695)
                      +..+..+..     .++|++|++++|.+++    .+|..+..+++|++|++++|++.
T Consensus       355 ~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~  411 (461)
T 1z7x_W          355 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG  411 (461)
T ss_dssp             HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             cccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence            433332221     4566666666666654    44555555666666666666654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=1.2e-33  Score=303.29  Aligned_cols=380  Identities=19%  Similarity=0.136  Sum_probs=229.1

Q ss_pred             CCCCEEEccCCCcCCCceEEeeccccccccC-hhhhhCCCCCCEEEcccccceeecCCCCCCCCCccEEEccCCCCCCCC
Q 036216          177 KNLDSLDLSNNSIVGPRVLQLYLNKLHGTLS-EIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSRF  255 (695)
Q Consensus       177 ~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~  255 (695)
                      ++|++|++++|+++              ..+ ...+..+++|+.|++++|.+......                    .+
T Consensus         3 ~~l~~L~Ls~~~l~--------------~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~--------------------~l   48 (461)
T 1z7x_W            3 LDIQSLDIQCEELS--------------DARWAELLPLLQQCQVVRLDDCGLTEARCK--------------------DI   48 (461)
T ss_dssp             EEEEEEEEESCCCC--------------HHHHHHHHHHHTTCSEEEEESSCCCHHHHH--------------------HH
T ss_pred             ccceehhhhhcccC--------------chhHHHHHhhcCCccEEEccCCCCCHHHHH--------------------HH
Confidence            45777788777765              222 11256677777777777665432110                    23


Q ss_pred             CccccCCCCCCEEEcccCCCccccChHHhhccc----ccceeeccccccccc-----ccCccccCccceEecccccceee
Q 036216          256 PLWLYSQKDLQFLDLFNSGISGTFPNRLLKSAS----QLYLLDLGHNQIHGE-----LTNLTKASQLSYLSLIANNFSGS  326 (695)
Q Consensus       256 ~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~----~L~~L~l~~n~l~~~-----~~~~~~~~~L~~L~l~~n~~~~~  326 (695)
                      +..+..+++|++|++++|.+.+..+..++..++    +|++|++++|.+...     ...+..+++|++|++++|.+.+.
T Consensus        49 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~  128 (461)
T 1z7x_W           49 SSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDA  128 (461)
T ss_dssp             HHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHH
T ss_pred             HHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchH
Confidence            344556667777777777766544545555555    577777777776631     22455566777777777766532


Q ss_pred             cC--------CCCCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCcccc-----CCCCCCEEeCCC
Q 036216          327 LP--------LISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWM-----SYQNLMALDLSN  393 (695)
Q Consensus       327 ~~--------~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-----~~~~L~~L~ls~  393 (695)
                      .+        ...++|++|++++|.+++.....+...+..+++|++|++++|.+.+..+..+.     ..++|++|++++
T Consensus       129 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~  208 (461)
T 1z7x_W          129 GLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLES  208 (461)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTT
T ss_pred             HHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccC
Confidence            11        11346788888888777666556666666777888888888776644333332     245777888887


Q ss_pred             Cccccc----CCccccCCCCCcEEECcCCcceeeC-----CccccCCCCCcEEEcCCCccccc----CChhhhhcCCCCc
Q 036216          394 NKFTGN----LPTSLGSLSSLVSLHLRKNRLSGTI-----PILLKNCTSLVTLDVGENEVFGN----IPSWFGERFSRMV  460 (695)
Q Consensus       394 n~~~~~----~~~~~~~l~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~~l~~L~  460 (695)
                      |.+++.    ++..+..+++|++|++++|.+.+..     +..+..+++|++|++++|.+.+.    ++..+. .+++|+
T Consensus       209 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~  287 (461)
T 1z7x_W          209 CGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR-AKESLK  287 (461)
T ss_dssp             SCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH-HCTTCC
T ss_pred             CCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHh-hCCCcc
Confidence            777642    3555666777777777777765432     22233467777777777776443    344443 467777


Q ss_pred             EEEcCCCcccccCCcccc-----CCCCCCEEeCCCCcCccc----CChhhhhcccCcccCCCCCCcccccCCCCCCCCCC
Q 036216          461 LLILRSNNFDGPLPTELC-----DLAFLQILDLADNNLSGT----IPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPG  531 (695)
Q Consensus       461 ~L~l~~n~~~~~~~~~l~-----~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~  531 (695)
                      +|++++|.+.+..+..+.     ..++|++|++++|.+++.    ++..+..++                          
T Consensus       288 ~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~--------------------------  341 (461)
T 1z7x_W          288 ELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNR--------------------------  341 (461)
T ss_dssp             EEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCS--------------------------
T ss_pred             eEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCC--------------------------
Confidence            777777776543322222     225777777777777643    222233333                          


Q ss_pred             ccccceEEEecCCcchhhhhcccccEEEcCCccccccCCccccC-----CCCCCEEeccCCcccc----cCCccccCcCC
Q 036216          532 TVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTN-----LKAVQSLNLSYNIFTG----RIPETIGTMRS  602 (695)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~-----l~~L~~L~Ls~n~l~~----~~p~~~~~l~~  602 (695)
                                            .|+.|++++|.+++..+..+..     .++|++|++++|.+++    .+|..+..+++
T Consensus       342 ----------------------~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~  399 (461)
T 1z7x_W          342 ----------------------FLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS  399 (461)
T ss_dssp             ----------------------SCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCC
T ss_pred             ----------------------CccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCC
Confidence                                  3367777777776554443332     5677777777777775    56667777777


Q ss_pred             CCEEECCCCcccccCCcCC-----cCCCCCCEEEcccCcCcc
Q 036216          603 LESIDFSVNKFTGEIPQSM-----SSLTFLNHLNLSNNYLTG  639 (695)
Q Consensus       603 L~~L~Ls~n~l~~~~p~~l-----~~l~~L~~L~ls~N~l~~  639 (695)
                      |+.|++++|++++.....+     .....|+.|++.++.+..
T Consensus       400 L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~  441 (461)
T 1z7x_W          400 LRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE  441 (461)
T ss_dssp             CCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred             ccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence            7777777777764311111     123456666666665553

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=1.4e-29  Score=258.39  Aligned_cols=222  Identities=20%  Similarity=0.227  Sum_probs=130.2

Q ss_pred             hccccceeecccccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCccee--eCCccccCCCCCc
Q 036216          358 ETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSG--TIPILLKNCTSLV  435 (695)
Q Consensus       358 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~  435 (695)
                      .+++|++|++++|.++ .+|..+.  ++|++|++++|.+.+..+..|..+++|++|++++|.+..  ..+..+..+ +|+
T Consensus       100 ~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~  175 (332)
T 2ft3_A          100 PLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLN  175 (332)
T ss_dssp             TCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCS
T ss_pred             CcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccC
Confidence            3556666666666655 3333332  566666666666665444556666666666666666642  445555555 666


Q ss_pred             EEEcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCC
Q 036216          436 TLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTG  515 (695)
Q Consensus       436 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~  515 (695)
                      .|++++|.+. .+|..+   .++|++|++++|++.+..+..+..+++|++|++++|++++..+..+..+++|        
T Consensus       176 ~L~l~~n~l~-~l~~~~---~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L--------  243 (332)
T 2ft3_A          176 YLRISEAKLT-GIPKDL---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTL--------  243 (332)
T ss_dssp             CCBCCSSBCS-SCCSSS---CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTC--------
T ss_pred             EEECcCCCCC-ccCccc---cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCC--------
Confidence            6666666663 344433   2566666666666665555666666666666666666665444455544444        


Q ss_pred             CcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCc
Q 036216          516 NAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPE  595 (695)
Q Consensus       516 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~  595 (695)
                                                              +.|++++|+++ .+|..+..+++|++|++++|++++..+.
T Consensus       244 ----------------------------------------~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~  282 (332)
T 2ft3_A          244 ----------------------------------------RELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVN  282 (332)
T ss_dssp             ----------------------------------------CEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTT
T ss_pred             ----------------------------------------CEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChh
Confidence                                                    56666666666 5666666666666666666666655555


Q ss_pred             cccCc------CCCCEEECCCCccc--ccCCcCCcCCCCCCEEEcccCc
Q 036216          596 TIGTM------RSLESIDFSVNKFT--GEIPQSMSSLTFLNHLNLSNNY  636 (695)
Q Consensus       596 ~~~~l------~~L~~L~Ls~n~l~--~~~p~~l~~l~~L~~L~ls~N~  636 (695)
                      .|...      .+|+.|++++|.+.  +..|.+|..+++|+.+++++|+
T Consensus       283 ~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          283 DFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             SSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             HccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            55432      45666666666665  4555666666666666666663

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=1e-28  Score=251.98  Aligned_cols=267  Identities=20%  Similarity=0.196  Sum_probs=169.9

Q ss_pred             CCcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeC
Q 036216            4 SLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGL   83 (695)
Q Consensus         4 ~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L   83 (695)
                      ++++++++++.++.+|...   .+++++|++++|.+++. .+..+.++++|++|++++|.+++..|..|.++++|++|++
T Consensus        32 ~l~~l~~~~~~l~~lp~~~---~~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPKDL---PPDTALLDLQNNKITEI-KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             ETTEEECTTSCCCSCCCSC---CTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCeEEEecCCCccccCccC---CCCCeEEECCCCcCCEe-ChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence            5677777777777776532   25677788888777764 4446777777888888877777666777777778888888


Q ss_pred             CCCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCcc--ccchhhhhhhcccccccceEEcc
Q 036216           84 PFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQ--EISEILEIFSGCVSNGLESLALA  161 (695)
Q Consensus        84 ~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~~~~~~~~~L~~L~L~  161 (695)
                      ++|.++ .+|..+.  ++|++|++++|.+.+..+..+.++++|++|++++|.+..  ..+.    .+..+.. |++|+++
T Consensus       108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~~~l~~-L~~L~l~  179 (330)
T 1xku_A          108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG----AFQGMKK-LSYIRIA  179 (330)
T ss_dssp             CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTT----GGGGCTT-CCEEECC
T ss_pred             CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChh----hccCCCC-cCEEECC
Confidence            877777 4444443  677778887777776666677777777777777777643  2222    3344444 6666666


Q ss_pred             CcccccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCCCCc
Q 036216          162 SSSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQL  241 (695)
Q Consensus       162 ~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L  241 (695)
                      +|.++.. |..+.  ++|++|++++|+++              .++...|.++++|+.|++++|.+....+..+..+++|
T Consensus       180 ~n~l~~l-~~~~~--~~L~~L~l~~n~l~--------------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  242 (330)
T 1xku_A          180 DTNITTI-PQGLP--PSLTELHLDGNKIT--------------KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL  242 (330)
T ss_dssp             SSCCCSC-CSSCC--TTCSEEECTTSCCC--------------EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTC
T ss_pred             CCccccC-Ccccc--ccCCEEECCCCcCC--------------ccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCC
Confidence            6666653 22222  56666666666664              3433456666666666666666666655566666666


Q ss_pred             cEEEccCCCCCCCCCccccCCCCCCEEEcccCCCccccChHHhhc------ccccceeeccccccc
Q 036216          242 IELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKS------ASQLYLLDLGHNQIH  301 (695)
Q Consensus       242 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~------l~~L~~L~l~~n~l~  301 (695)
                      ++|++++|.+. .+|.++..+++|++|++++|.++ .++...+..      .+.++.+++++|.+.
T Consensus       243 ~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~-~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~  306 (330)
T 1xku_A          243 RELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  306 (330)
T ss_dssp             CEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC-CCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             CEEECCCCcCc-cCChhhccCCCcCEEECCCCcCC-ccChhhcCCcccccccccccceEeecCccc
Confidence            66666666665 44555666666666666666665 343333221      244555555555543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=8.4e-29  Score=252.54  Aligned_cols=267  Identities=16%  Similarity=0.231  Sum_probs=181.2

Q ss_pred             ccceEecccccceeecCCCCCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeC
Q 036216          312 QLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDL  391 (695)
Q Consensus       312 ~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l  391 (695)
                      +++.++++++.+.......++.++.|++++|.+++..+.    .+..+++|++|++++|.+++..|..|..+++|++|++
T Consensus        32 ~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDG----DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             ETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTT----TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChh----hhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence            344455554444433223345677777777776654332    2335777777888777777666777777778888888


Q ss_pred             CCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccc--cCChhhhhcCCCCcEEEcCCCcc
Q 036216          392 SNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFG--NIPSWFGERFSRMVLLILRSNNF  469 (695)
Q Consensus       392 s~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~~l~~L~~L~l~~n~~  469 (695)
                      ++|.++ .+|..+.  ++|++|++++|++.+..+..+..+++|++|++++|.+..  ..+..+. .+++|+.|++++|.+
T Consensus       108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~L~~L~l~~n~l  183 (330)
T 1xku_A          108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ-GMKKLSYIRIADTNI  183 (330)
T ss_dssp             CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGG-GCTTCCEEECCSSCC
T ss_pred             CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhcc-CCCCcCEEECCCCcc
Confidence            887777 4454443  677888888887776666667777788888888777642  4444443 677778888877777


Q ss_pred             cccCCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhh
Q 036216          470 DGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYN  549 (695)
Q Consensus       470 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  549 (695)
                      +. +|..+.  ++|++|++++|++++..|..+..+++|                                          
T Consensus       184 ~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L------------------------------------------  218 (330)
T 1xku_A          184 TT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNL------------------------------------------  218 (330)
T ss_dssp             CS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTC------------------------------------------
T ss_pred             cc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCC------------------------------------------
Confidence            63 444433  677788888887776666666665555                                          


Q ss_pred             hhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCcC------
Q 036216          550 EILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSS------  623 (695)
Q Consensus       550 ~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~------  623 (695)
                            +.|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|+.|++++|++++..+..|..      
T Consensus       219 ------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~  291 (330)
T 1xku_A          219 ------AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTK  291 (330)
T ss_dssp             ------CEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTT
T ss_pred             ------CEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccc
Confidence                  67777777777766667777777777777777777 66777777777777777777777655555543      


Q ss_pred             CCCCCEEEcccCcCc
Q 036216          624 LTFLNHLNLSNNYLT  638 (695)
Q Consensus       624 l~~L~~L~ls~N~l~  638 (695)
                      .+.++.+++++|++.
T Consensus       292 ~~~l~~l~l~~N~~~  306 (330)
T 1xku_A          292 KASYSGVSLFSNPVQ  306 (330)
T ss_dssp             SCCCSEEECCSSSSC
T ss_pred             cccccceEeecCccc
Confidence            356777777777775

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=5.2e-29  Score=254.20  Aligned_cols=285  Identities=20%  Similarity=0.201  Sum_probs=140.5

Q ss_pred             CCcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeC
Q 036216            4 SLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGL   83 (695)
Q Consensus         4 ~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L   83 (695)
                      ++++++++++.++.+|...   .++|++|++++|.++.. .|..+.++++|++|++++|.+++..|..|.++++|++|++
T Consensus        34 ~l~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEI---SPDTTLLDLQNNDISEL-RKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCC---CTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCccccCCCC---CCCCeEEECCCCcCCcc-CHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            3555555555555555422   24555555555555543 3344555555555555555555555555555555555555


Q ss_pred             CCCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCc
Q 036216           84 PFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASS  163 (695)
Q Consensus        84 ~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n  163 (695)
                      ++|.++ .+|..+.  ++|++|++++|.+.+..+..|.++++|++|++++|.+..                         
T Consensus       110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-------------------------  161 (332)
T 2ft3_A          110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN-------------------------  161 (332)
T ss_dssp             CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG-------------------------
T ss_pred             CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcccc-------------------------
Confidence            555555 2333332  455555555555554444445555555555555555532                         


Q ss_pred             ccccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCCCCccE
Q 036216          164 SISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIE  243 (695)
Q Consensus       164 ~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~  243 (695)
                        .+..+..+..+ +|++|++++|+++              .+|...   .++|+.|++++|.+....+..+..+++|+.
T Consensus       162 --~~~~~~~~~~l-~L~~L~l~~n~l~--------------~l~~~~---~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~  221 (332)
T 2ft3_A          162 --SGFEPGAFDGL-KLNYLRISEAKLT--------------GIPKDL---PETLNELHLDHNKIQAIELEDLLRYSKLYR  221 (332)
T ss_dssp             --GGSCTTSSCSC-CCSCCBCCSSBCS--------------SCCSSS---CSSCSCCBCCSSCCCCCCTTSSTTCTTCSC
T ss_pred             --CCCCcccccCC-ccCEEECcCCCCC--------------ccCccc---cCCCCEEECCCCcCCccCHHHhcCCCCCCE
Confidence              11233344444 4555555555443              222211   134555555555555444445555555555


Q ss_pred             EEccCCCCCCCCCccccCCCCCCEEEcccCCCccccChHHhhcccccceeeccccccccccc-Cccc------cCccceE
Q 036216          244 LGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELT-NLTK------ASQLSYL  316 (695)
Q Consensus       244 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~------~~~L~~L  316 (695)
                      |++++|.+.+..+.++..+++|++|++++|.+. .+|..+ ..+++|+.|++++|.+++..+ .+..      ...|+.|
T Consensus       222 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l-~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L  299 (332)
T 2ft3_A          222 LGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGL-PDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGI  299 (332)
T ss_dssp             CBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTG-GGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEE
T ss_pred             EECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhh-hcCccCCEEECCCCCCCccChhHccccccccccccccce
Confidence            555555555554445555555555555555555 455442 345555555555555554332 1111      2445566


Q ss_pred             ecccccce--eecCCC---CCCCcEEEccCC
Q 036216          317 SLIANNFS--GSLPLI---SSNLTVLELSGN  342 (695)
Q Consensus       317 ~l~~n~~~--~~~~~~---~~~L~~L~l~~n  342 (695)
                      ++.+|++.  +..+..   +++|+.+++++|
T Consensus       300 ~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n  330 (332)
T 2ft3_A          300 SLFNNPVPYWEVQPATFRCVTDRLAIQFGNY  330 (332)
T ss_dssp             ECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred             EeecCcccccccCcccccccchhhhhhcccc
Confidence            66666554  222221   345666666655

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=3.6e-28  Score=250.27  Aligned_cols=277  Identities=18%  Similarity=0.191  Sum_probs=214.3

Q ss_pred             CCCcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEe
Q 036216            3 PSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLG   82 (695)
Q Consensus         3 ~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   82 (695)
                      +.....+++++.++.+|....   ++|++|++++|.+++. .+..+.++++|++|++++|.+++..+..|.++++|++|+
T Consensus        31 ~~~~~c~~~~~~l~~iP~~~~---~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (353)
T 2z80_A           31 DRNGICKGSSGSLNSIPSGLT---EAVKSLDLSNNRITYI-SNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD  106 (353)
T ss_dssp             CTTSEEECCSTTCSSCCTTCC---TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCeEeeCCCCCccccccccc---ccCcEEECCCCcCccc-CHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence            455668999999999987433   5899999999999874 445788999999999999999988888999999999999


Q ss_pred             CCCCCCCCCchhhhcCCCCCCEEEcccCcCCcccc-hhhcCCCCCCEEEccCCc-CccccchhhhhhhcccccccceEEc
Q 036216           83 LPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIP-RSMARLCNLRRLYLGGAK-LNQEISEILEIFSGCVSNGLESLAL  160 (695)
Q Consensus        83 L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~~L~~L~L  160 (695)
                      +++|.+++..+..|+++++|++|++++|.++...+ ..+.++++|++|++++|. +....+.    .++.+.. |++|++
T Consensus       107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~----~~~~l~~-L~~L~l  181 (353)
T 2z80_A          107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK----DFAGLTF-LEELEI  181 (353)
T ss_dssp             CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT----TTTTCCE-EEEEEE
T ss_pred             CCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHH----HccCCCC-CCEEEC
Confidence            99999997777779999999999999999995433 478999999999999994 6555444    4555666 999999


Q ss_pred             cCcccccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCC---C
Q 036216          161 ASSSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWI---P  237 (695)
Q Consensus       161 ~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~---~  237 (695)
                      ++|.+.+..|..+..+++|++|++++|.+.              .++...+..+++|+.|++++|.+.+.....+.   .
T Consensus       182 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~--------------~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~  247 (353)
T 2z80_A          182 DASDLQSYEPKSLKSIQNVSHLILHMKQHI--------------LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGET  247 (353)
T ss_dssp             EETTCCEECTTTTTTCSEEEEEEEECSCST--------------THHHHHHHHTTTEEEEEEESCBCTTCCCC------C
T ss_pred             CCCCcCccCHHHHhccccCCeecCCCCccc--------------cchhhhhhhcccccEEECCCCccccccccccccccc
Confidence            999999988999999999999999999885              66666677899999999999988765444332   2


Q ss_pred             CCCccEEEccCCCCCC----CCCccccCCCCCCEEEcccCCCccccChHHhhcccccceeeccccccccc
Q 036216          238 PFQLIELGLRSCDVGS----RFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGE  303 (695)
Q Consensus       238 ~~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~  303 (695)
                      ...++.++++++.+.+    .+|.++..+++|++|++++|.++ .+|..++..+++|+.|++++|.+.+.
T Consensus       248 ~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~  316 (353)
T 2z80_A          248 NSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS  316 (353)
T ss_dssp             CCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             cchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCc
Confidence            3455666666665543    24455556666666666666665 55655555566666666666655543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=1.8e-29  Score=279.80  Aligned_cols=258  Identities=18%  Similarity=0.171  Sum_probs=146.5

Q ss_pred             chhhcCCCCCCEEEcCCCcCc---ccCCccCC------------CCCCCCEEeCCCCCCCCCchhhhcC-CC-CCCEEEc
Q 036216           45 PAWVFGLSRLHFLNLGYNNFQ---GPIPEGLQ------------NLTSLKHLGLPFNHFSSSVPKWFDR-LT-HLEHLSL  107 (695)
Q Consensus        45 ~~~~~~l~~L~~L~Ls~n~i~---~~~~~~~~------------~l~~L~~L~L~~n~l~~~~p~~~~~-l~-~L~~L~L  107 (695)
                      +..+..+++|++|+++++...   +..|..+.            .+++|++|+|++|.+++..+..+.. ++ +|++|++
T Consensus        66 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L  145 (592)
T 3ogk_B           66 DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKL  145 (592)
T ss_dssp             HHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEE
T ss_pred             HHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEEC
Confidence            334456666777777665321   12222222            5677777777777766555555554 23 3777777


Q ss_pred             ccCcC-Cc-ccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCcccc----cccchhcCCCCCCCE
Q 036216          108 SYNSL-EG-RIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSIS----GHLTDQLGQFKNLDS  181 (695)
Q Consensus       108 s~n~l-~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~----~~~~~~l~~l~~L~~  181 (695)
                      ++|.. .. .++.....+++|++|++++|.+.+....++......++. |++|++++|.+.    +.++..+.++++|++
T Consensus       146 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~-L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~  224 (592)
T 3ogk_B          146 DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTS-LEVLNFYMTEFAKISPKDLETIARNCRSLVS  224 (592)
T ss_dssp             ESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCC-CCEEECTTCCCSSCCHHHHHHHHHHCTTCCE
T ss_pred             cCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCC-ccEEEeeccCCCccCHHHHHHHHhhCCCCcE
Confidence            77651 11 122233467777777777777655543333334444554 777777777765    233444566777888


Q ss_pred             EEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccce---eecCCCCCCCCCccEEEccCCCCCCCCCcc
Q 036216          182 LDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLT---LKVKRDWIPPFQLIELGLRSCDVGSRFPLW  258 (695)
Q Consensus       182 L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  258 (695)
                      |++++|.+.              .++. .+.++++|+.+.++.....   ......+..+++|+.++++++. ...+|..
T Consensus       225 L~L~~~~~~--------------~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~  288 (592)
T 3ogk_B          225 VKVGDFEIL--------------ELVG-FFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPIL  288 (592)
T ss_dssp             EECSSCBGG--------------GGHH-HHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGG
T ss_pred             EeccCccHH--------------HHHH-HHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHH
Confidence            887777664              3442 5677777777777653222   1222344556667777766642 2345556


Q ss_pred             ccCCCCCCEEEcccCCCccccChHHhhcccccceeecccccccccccCc-cccCccceEecc
Q 036216          259 LYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNL-TKASQLSYLSLI  319 (695)
Q Consensus       259 l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~~L~~L~l~  319 (695)
                      +..+++|++|++++|.+.+.....++..+++|+.|+++++...+.++.+ ..+++|++|+++
T Consensus       289 ~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~  350 (592)
T 3ogk_B          289 FPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIE  350 (592)
T ss_dssp             GGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred             HhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEee
Confidence            6666777777777776654444444566677777777633222222222 334556666665

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=4.2e-28  Score=246.02  Aligned_cols=227  Identities=18%  Similarity=0.234  Sum_probs=190.2

Q ss_pred             ccccceeecccccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEE
Q 036216          359 TMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLD  438 (695)
Q Consensus       359 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  438 (695)
                      .+.++.|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+. .+|..+..+++|++|+
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS  156 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred             ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence            367788888888887 66777777888888888888888 77878888888888888888888 6777888888888888


Q ss_pred             cCCCcccccCChhhh--------hcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCcccCChhhhhcccCccc
Q 036216          439 VGENEVFGNIPSWFG--------ERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATV  510 (695)
Q Consensus       439 l~~n~~~~~~~~~~~--------~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l  510 (695)
                      +++|.+.+.+|..+.        ..+++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|..+..+++|   
T Consensus       157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L---  231 (328)
T 4fcg_A          157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKL---  231 (328)
T ss_dssp             EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTC---
T ss_pred             CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCC---
Confidence            888877788887653        14888999999999888 77888888999999999999988 466666666655   


Q ss_pred             CCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCccc
Q 036216          511 NPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFT  590 (695)
Q Consensus       511 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  590 (695)
                                                                   ++|++++|++.+.+|..++.+++|++|+|++|.+.
T Consensus       232 ---------------------------------------------~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~  266 (328)
T 4fcg_A          232 ---------------------------------------------EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNL  266 (328)
T ss_dssp             ---------------------------------------------CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTC
T ss_pred             ---------------------------------------------CEEECcCCcchhhhHHHhcCCCCCCEEECCCCCch
Confidence                                                         78889999988889988999999999999999888


Q ss_pred             ccCCccccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEEcccCcCc
Q 036216          591 GRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLT  638 (695)
Q Consensus       591 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~  638 (695)
                      +.+|..++++++|+.|+|++|++.+.+|+.+.++++|+.+++..+.+.
T Consensus       267 ~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          267 LTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             CBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             hhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            899988999999999999999999899999999999999999877654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=1.7e-27  Score=240.12  Aligned_cols=234  Identities=21%  Similarity=0.211  Sum_probs=192.3

Q ss_pred             cccceeecccccccCCCCccccCCCCCCEEeCCCCccccc--CCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEE
Q 036216          360 MKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGN--LPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTL  437 (695)
Q Consensus       360 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  437 (695)
                      +++++|++++|.++...+..|..+++|++|++++|.+...  .+..+..+++|++|++++|.+. .+|..+..+++|++|
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L  106 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL  106 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence            4677777777777755455577888888888888888732  2556667888999999999887 456668888999999


Q ss_pred             EcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCcc-cCChhhhhcccCcccCCCCCC
Q 036216          438 DVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSG-TIPNCIHNLTAMATVNPFTGN  516 (695)
Q Consensus       438 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~l~~~~~~  516 (695)
                      ++++|.+.+..+...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ ..|..+..+++|         
T Consensus       107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L---------  177 (306)
T 2z66_A          107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL---------  177 (306)
T ss_dssp             ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC---------
T ss_pred             ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCC---------
Confidence            9999988554442333478899999999999988888888899999999999999886 467666666555         


Q ss_pred             cccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCcc
Q 036216          517 AIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPET  596 (695)
Q Consensus       517 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~  596 (695)
                                                             ++|++++|++++..|..+..+++|++|++++|++++..+..
T Consensus       178 ---------------------------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  218 (306)
T 2z66_A          178 ---------------------------------------TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP  218 (306)
T ss_dssp             ---------------------------------------CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGG
T ss_pred             ---------------------------------------CEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhh
Confidence                                                   78899999999888899999999999999999999777778


Q ss_pred             ccCcCCCCEEECCCCcccccCCcCCcCCC-CCCEEEcccCcCcccCC
Q 036216          597 IGTMRSLESIDFSVNKFTGEIPQSMSSLT-FLNHLNLSNNYLTGKIP  642 (695)
Q Consensus       597 ~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~ls~N~l~~~iP  642 (695)
                      ++.+++|+.|++++|++++..|..+..++ +|++|++++|++++..+
T Consensus       219 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~  265 (306)
T 2z66_A          219 YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  265 (306)
T ss_dssp             GTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred             ccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence            99999999999999999999999999984 99999999999987543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=2.6e-28  Score=251.32  Aligned_cols=275  Identities=18%  Similarity=0.178  Sum_probs=207.8

Q ss_pred             EecccccceeecCCCCCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeCCCCc
Q 036216          316 LSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNK  395 (695)
Q Consensus       316 L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~  395 (695)
                      .+.+++.++......++++++|++++|.+++..+    ..+..+++|+.|++++|.+++..+..|..+++|++|++++|.
T Consensus        36 c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  111 (353)
T 2z80_A           36 CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISN----SDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY  111 (353)
T ss_dssp             EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECT----TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             eeCCCCCcccccccccccCcEEECCCCcCcccCH----HHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence            3444444443333334567777777777764332    234458888889999888887777788888999999999999


Q ss_pred             ccccCCccccCCCCCcEEECcCCcceeeCC-ccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCC
Q 036216          396 FTGNLPTSLGSLSSLVSLHLRKNRLSGTIP-ILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLP  474 (695)
Q Consensus       396 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  474 (695)
                      +++..+..|..+++|++|++++|++.+..+ ..+..+++|++|++++|...+.++...+..+++|++|++++|++.+..|
T Consensus       112 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  191 (353)
T 2z80_A          112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP  191 (353)
T ss_dssp             CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred             CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCH
Confidence            886555558888999999999998884443 4788889999999998853344443333478889999999999988888


Q ss_pred             ccccCCCCCCEEeCCCCcCcccCChh-hhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcc
Q 036216          475 TELCDLAFLQILDLADNNLSGTIPNC-IHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILN  553 (695)
Q Consensus       475 ~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  553 (695)
                      ..+..+++|++|++++|++. .+|.. +..+                                                +
T Consensus       192 ~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~------------------------------------------------~  222 (353)
T 2z80_A          192 KSLKSIQNVSHLILHMKQHI-LLLEIFVDVT------------------------------------------------S  222 (353)
T ss_dssp             TTTTTCSEEEEEEEECSCST-THHHHHHHHT------------------------------------------------T
T ss_pred             HHHhccccCCeecCCCCccc-cchhhhhhhc------------------------------------------------c
Confidence            88899999999999999886 33332 2233                                                3


Q ss_pred             cccEEEcCCccccccCCcccc---CCCCCCEEeccCCcccc----cCCccccCcCCCCEEECCCCcccccCCcC-CcCCC
Q 036216          554 LVRIIDFSKNLFSGTLPMGLT---NLKAVQSLNLSYNIFTG----RIPETIGTMRSLESIDFSVNKFTGEIPQS-MSSLT  625 (695)
Q Consensus       554 ~l~~L~Ls~n~l~~~~p~~l~---~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~  625 (695)
                      .|+.|++++|++++..+..+.   ..+.++.++++++.+.+    .+|+.++.+++|+.|++++|+++ .+|.. |..++
T Consensus       223 ~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~  301 (353)
T 2z80_A          223 SVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLT  301 (353)
T ss_dssp             TEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCT
T ss_pred             cccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCC
Confidence            448899999999976655443   46778899999988875    47888999999999999999999 56665 58999


Q ss_pred             CCCEEEcccCcCcccCCCC
Q 036216          626 FLNHLNLSNNYLTGKIPSS  644 (695)
Q Consensus       626 ~L~~L~ls~N~l~~~iP~~  644 (695)
                      +|++|++++|++.+..|..
T Consensus       302 ~L~~L~L~~N~~~~~~~~l  320 (353)
T 2z80_A          302 SLQKIWLHTNPWDCSCPRI  320 (353)
T ss_dssp             TCCEEECCSSCBCCCHHHH
T ss_pred             CCCEEEeeCCCccCcCCCc
Confidence            9999999999999988753

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=6.3e-27  Score=235.98  Aligned_cols=249  Identities=24%  Similarity=0.224  Sum_probs=188.8

Q ss_pred             cEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCccc--CCccCCCCCCCCEEeC
Q 036216            6 VELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGP--IPEGLQNLTSLKHLGL   83 (695)
Q Consensus         6 ~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~L   83 (695)
                      +.++++++.++.+|...   .++|++|++++|.++.. .+..+.++++|++|++++|.++..  .+..+..+++|++|++
T Consensus        10 ~~l~c~~~~l~~ip~~~---~~~l~~L~L~~n~l~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L   85 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTGI---PSSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL   85 (306)
T ss_dssp             TEEECCSSCCSSCCSCC---CTTCCEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred             CEEEcCCCCcccCCCCC---CCCCCEEECCCCccCcc-CHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence            57888888899888733   36899999999999873 334467899999999999988743  2566778899999999


Q ss_pred             CCCCCCCCchhhhcCCCCCCEEEcccCcCCcccc-hhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccC
Q 036216           84 PFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIP-RSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALAS  162 (695)
Q Consensus        84 ~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~  162 (695)
                      ++|.+. .+|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+.    .+..+.. |++|++++
T Consensus        86 s~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~-L~~L~l~~  159 (306)
T 2z66_A           86 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG----IFNGLSS-LEVLKMAG  159 (306)
T ss_dssp             CSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTT----TTTTCTT-CCEEECTT
T ss_pred             CCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchh----hcccCcC-CCEEECCC
Confidence            999888 467778889999999999998886544 5788889999999999988776655    4445555 88888888


Q ss_pred             ccccc-ccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCCCCc
Q 036216          163 SSISG-HLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQL  241 (695)
Q Consensus       163 n~~~~-~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L  241 (695)
                      |.+.+ ..|..+..+++|++|++++|+++              .+++..|..+++|+.|++++|.+.......+..+++|
T Consensus       160 n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~--------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  225 (306)
T 2z66_A          160 NSFQENFLPDIFTELRNLTFLDLSQCQLE--------------QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL  225 (306)
T ss_dssp             CEEGGGEECSCCTTCTTCCEEECTTSCCC--------------EECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTC
T ss_pred             CccccccchhHHhhCcCCCEEECCCCCcC--------------CcCHHHhcCCCCCCEEECCCCccCccChhhccCcccC
Confidence            88776 56777778888888888888775              4444467777778888888777776665566667777


Q ss_pred             cEEEccCCCCCCCCCccccCCC-CCCEEEcccCCCccc
Q 036216          242 IELGLRSCDVGSRFPLWLYSQK-DLQFLDLFNSGISGT  278 (695)
Q Consensus       242 ~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~i~~~  278 (695)
                      +.|++++|.+.+..+..+..++ +|++|++++|.+.+.
T Consensus       226 ~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~  263 (306)
T 2z66_A          226 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  263 (306)
T ss_dssp             CEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred             CEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence            7777777777776666666663 677777777776543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=4.4e-27  Score=234.41  Aligned_cols=227  Identities=20%  Similarity=0.195  Sum_probs=137.4

Q ss_pred             eeecccccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCc
Q 036216          364 FLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENE  443 (695)
Q Consensus       364 ~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  443 (695)
                      .++.+++.++ .+|..+  .++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.
T Consensus        15 ~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   91 (285)
T 1ozn_A           15 TTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (285)
T ss_dssp             EEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             EEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence            3444444444 333322  3456666666666665555556666666666666666665556666666666666666665


Q ss_pred             ccccC-ChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccC
Q 036216          444 VFGNI-PSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSF  522 (695)
Q Consensus       444 ~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~  522 (695)
                      ..+.+ |..+ ..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|               
T Consensus        92 ~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L---------------  155 (285)
T 1ozn_A           92 QLRSVDPATF-HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL---------------  155 (285)
T ss_dssp             TCCCCCTTTT-TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC---------------
T ss_pred             CccccCHHHh-cCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCc---------------
Confidence            22333 3333 256666666666666666556666666666666666666664444445444443               


Q ss_pred             CCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCC
Q 036216          523 PLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRS  602 (695)
Q Consensus       523 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~  602 (695)
                                                       +.|++++|++++..+..|..+++|++|++++|.+++..|..|+.+++
T Consensus       156 ---------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  202 (285)
T 1ozn_A          156 ---------------------------------THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR  202 (285)
T ss_dssp             ---------------------------------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             ---------------------------------cEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCccc
Confidence                                             56666666666555555666677777777777776666666666777


Q ss_pred             CCEEECCCCcccccCCcCCcCCCCCCEEEcccCcCcccCC
Q 036216          603 LESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIP  642 (695)
Q Consensus       603 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~iP  642 (695)
                      |+.|++++|++++..+..+..+++|++|++++|++.+..+
T Consensus       203 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~  242 (285)
T 1ozn_A          203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (285)
T ss_dssp             CCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             ccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence            7777777777765544556666777777777776665444

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=3.2e-29  Score=277.75  Aligned_cols=412  Identities=14%  Similarity=0.043  Sum_probs=241.5

Q ss_pred             CCccCCCCCCCCCEEECCCCCCC---CCCCc------------hhhcCCCCCCEEEcCCCcCcccCCccCCC-CC-CCCE
Q 036216           18 FPQLPVANFSTLTTLDLSHNQFD---NSFVP------------AWVFGLSRLHFLNLGYNNFQGPIPEGLQN-LT-SLKH   80 (695)
Q Consensus        18 ~~~~~~~~l~~L~~L~Ls~n~i~---~~~~~------------~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-l~-~L~~   80 (695)
                      .+...+..+++|++|+++++...   +. +|            .....+++|++|+|++|.+++..+..+.. ++ +|++
T Consensus        64 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~  142 (592)
T 3ogk_B           64 TPDRLSRRFPNLRSLKLKGKPRAAMFNL-IPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLET  142 (592)
T ss_dssp             CHHHHHHHCTTCSEEEEECSCGGGGGTC-SCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCE
T ss_pred             ChHHHHHhCCCCeEEEecCCcchhhccc-ccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcE
Confidence            34445667778888888764320   00 11            11226888899999888877655555554 33 4889


Q ss_pred             EeCCCCCC-CC-CchhhhcCCCCCCEEEcccCcCCcc----cchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccc
Q 036216           81 LGLPFNHF-SS-SVPKWFDRLTHLEHLSLSYNSLEGR----IPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNG  154 (695)
Q Consensus        81 L~L~~n~l-~~-~~p~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~  154 (695)
                      |++++|.. +. .++.....+++|++|++++|.+.+.    ++..+..+++|++|++++|.+.+.....+...+..+++ 
T Consensus       143 L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~-  221 (592)
T 3ogk_B          143 LKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRS-  221 (592)
T ss_dssp             EEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTT-
T ss_pred             EECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCC-
Confidence            99888762 11 1223345788899999998887654    44456678889999998888874444444445556665 


Q ss_pred             cceEEccCcccccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCC
Q 036216          155 LESLALASSSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRD  234 (695)
Q Consensus       155 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~  234 (695)
                      |+.|++++|.+.+ ++..+..+++|++|+++.......          .+... ..+..+++|+.+.++++. ....+..
T Consensus       222 L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~----------~~~~~-~~l~~~~~L~~L~l~~~~-~~~l~~~  288 (592)
T 3ogk_B          222 LVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIG----------MPEKY-MNLVFPRKLCRLGLSYMG-PNEMPIL  288 (592)
T ss_dssp             CCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTT----------CTTSS-SCCCCCTTCCEEEETTCC-TTTGGGG
T ss_pred             CcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccc----------hHHHH-HHhhccccccccCccccc-hhHHHHH
Confidence            9999999988877 567788889999999875321100          00111 145677888888887753 2234445


Q ss_pred             CCCCCCccEEEccCCCCCCCCC-ccccCCCCCCEEEcccCCCccccChHHhhcccccceeeccc-----------ccccc
Q 036216          235 WIPPFQLIELGLRSCDVGSRFP-LWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGH-----------NQIHG  302 (695)
Q Consensus       235 ~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~-----------n~l~~  302 (695)
                      +..+++|++|++++|.+..... ..+..+++|++|+++ +.+.+.....+...+++|++|++++           +.++.
T Consensus       289 ~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~  367 (592)
T 3ogk_B          289 FPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQ  367 (592)
T ss_dssp             GGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCH
T ss_pred             HhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCH
Confidence            6677899999999988654433 346788999999999 4454444455567789999999993           45543


Q ss_pred             c-ccC-ccccCccceEecccccceeecCC----CCCCCcEEEcc----CCcCCCccch-hhhhhhhhccccceeeccccc
Q 036216          303 E-LTN-LTKASQLSYLSLIANNFSGSLPL----ISSNLTVLELS----GNSLSGPIFH-FLCYTINETMKLKFLFLDRNI  371 (695)
Q Consensus       303 ~-~~~-~~~~~~L~~L~l~~n~~~~~~~~----~~~~L~~L~l~----~n~l~~~~~~-~~~~~~~~~~~L~~L~l~~n~  371 (695)
                      . +.. ...+++|++|++..+.+++..+.    .+++|+.|+++    .|.+++...+ .+...+..+++|+.|+++.|.
T Consensus       368 ~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~  447 (592)
T 3ogk_B          368 RGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQ  447 (592)
T ss_dssp             HHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCG
T ss_pred             HHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCC
Confidence            2 222 34578999999977777653221    14456666664    3344432111 122223335555555554322


Q ss_pred             --ccCCCCcccc-CCCCCCEEeCCCCcccc-cCCccccCCCCCcEEECcCCcceee-CCccccCCCCCcEEEcCCCccc
Q 036216          372 --LQGKLPDCWM-SYQNLMALDLSNNKFTG-NLPTSLGSLSSLVSLHLRKNRLSGT-IPILLKNCTSLVTLDVGENEVF  445 (695)
Q Consensus       372 --l~~~~~~~~~-~~~~L~~L~ls~n~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~  445 (695)
                        +++..+..+. .+++|++|++++|.+++ .++..+..+++|++|++++|.+++. ++..+..+++|++|++++|+++
T Consensus       448 ~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it  526 (592)
T 3ogk_B          448 GGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS  526 (592)
T ss_dssp             GGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred             CCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence              2222222221 24445555555554443 1222233444444444444444322 1222233444444444444443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=2.4e-26  Score=244.90  Aligned_cols=227  Identities=21%  Similarity=0.217  Sum_probs=143.8

Q ss_pred             ccceeecccccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcC
Q 036216          361 KLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVG  440 (695)
Q Consensus       361 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  440 (695)
                      .++.|++++|.+++..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|++++..+..|..+++|++|+++
T Consensus        76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  155 (452)
T 3zyi_A           76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR  155 (452)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECC
T ss_pred             CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECC
Confidence            45555555555555555556666666666666666665555566666666666666666665555556666666666666


Q ss_pred             CCcccccCChhhhhcCCCCcEEEcCCCcccccC-CccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCccc
Q 036216          441 ENEVFGNIPSWFGERFSRMVLLILRSNNFDGPL-PTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIE  519 (695)
Q Consensus       441 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~  519 (695)
                      +|.+. .+|...+..+++|+.|++++|...+.+ +..|..+++|++|++++|++++ +|. +..++              
T Consensus       156 ~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~-~~~l~--------------  218 (452)
T 3zyi_A          156 NNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MPN-LTPLV--------------  218 (452)
T ss_dssp             SCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CCC-CTTCT--------------
T ss_pred             CCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-ccc-ccccc--------------
Confidence            66653 333333335666666666664333233 3346667777777777776662 221 22222              


Q ss_pred             ccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccC
Q 036216          520 YSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGT  599 (695)
Q Consensus       520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~  599 (695)
                                                        .|+.|++++|++++..|..|.++++|++|++++|++++..|..|..
T Consensus       219 ----------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  264 (452)
T 3zyi_A          219 ----------------------------------GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDG  264 (452)
T ss_dssp             ----------------------------------TCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred             ----------------------------------cccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcC
Confidence                                              2367777777777777777777777888888888777777777777


Q ss_pred             cCCCCEEECCCCcccccCCcCCcCCCCCCEEEcccCcCc
Q 036216          600 MRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLT  638 (695)
Q Consensus       600 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~  638 (695)
                      +++|+.|+|++|++++..+..+..+++|++|++++|++.
T Consensus       265 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          265 LASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             CTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             CCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence            778888888888777666666777777888888887765

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=2.3e-26  Score=244.07  Aligned_cols=227  Identities=23%  Similarity=0.217  Sum_probs=139.6

Q ss_pred             ccceeecccccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcC
Q 036216          361 KLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVG  440 (695)
Q Consensus       361 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  440 (695)
                      .++.|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|+++...+..|..+++|++|+++
T Consensus        65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  144 (440)
T 3zyj_A           65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR  144 (440)
T ss_dssp             TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC
T ss_pred             CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCC
Confidence            44455555555554444555556666666666666655555555556666666666666554444455556666666666


Q ss_pred             CCcccccCChhhhhcCCCCcEEEcCCCccccc-CCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCccc
Q 036216          441 ENEVFGNIPSWFGERFSRMVLLILRSNNFDGP-LPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIE  519 (695)
Q Consensus       441 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~  519 (695)
                      +|.+. .++...+..+++|+.|++++|+..+. .+..|.++++|++|++++|+++ .+|. +..++              
T Consensus       145 ~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~-~~~l~--------------  207 (440)
T 3zyj_A          145 NNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLI--------------  207 (440)
T ss_dssp             SCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC-CTTCS--------------
T ss_pred             CCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccc-cCCCc--------------
Confidence            66553 33332223566666666665333222 2335666677777777777666 3331 22222              


Q ss_pred             ccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccC
Q 036216          520 YSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGT  599 (695)
Q Consensus       520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~  599 (695)
                                                        .|+.|+|++|++++..|..|.++++|++|++++|++++..|..|..
T Consensus       208 ----------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  253 (440)
T 3zyj_A          208 ----------------------------------KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDN  253 (440)
T ss_dssp             ----------------------------------SCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTT
T ss_pred             ----------------------------------ccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcC
Confidence                                              2367777777777766777777777777777777777777777777


Q ss_pred             cCCCCEEECCCCcccccCCcCCcCCCCCCEEEcccCcCc
Q 036216          600 MRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLT  638 (695)
Q Consensus       600 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~  638 (695)
                      +++|+.|+|++|++++..+..|..+++|+.|++++|++.
T Consensus       254 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          254 LQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             CCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            777777777777777666666777777777777777764

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=4.2e-27  Score=238.63  Aligned_cols=220  Identities=21%  Similarity=0.269  Sum_probs=199.8

Q ss_pred             CCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEE
Q 036216          383 YQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLL  462 (695)
Q Consensus       383 ~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L  462 (695)
                      .++++.|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+. .+++|++|
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~-~l~~L~~L  155 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIA-SLNRLREL  155 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGG-GCTTCCEE
T ss_pred             ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHh-cCcCCCEE
Confidence            478999999999999 77888888999999999999999 88999999999999999999995 8898876 79999999


Q ss_pred             EcCCCcccccCCccccC---------CCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCcc
Q 036216          463 ILRSNNFDGPLPTELCD---------LAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTV  533 (695)
Q Consensus       463 ~l~~n~~~~~~~~~l~~---------l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~  533 (695)
                      ++++|++.+.+|..+..         +++|++|++++|+++ .+|..+..+++|                          
T Consensus       156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L--------------------------  208 (328)
T 4fcg_A          156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNL--------------------------  208 (328)
T ss_dssp             EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTC--------------------------
T ss_pred             ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCC--------------------------
Confidence            99999999999887764         999999999999999 888888777766                          


Q ss_pred             ccceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcc
Q 036216          534 TEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKF  613 (695)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l  613 (695)
                                            ++|++++|+++ .+|..+..+++|++|++++|.+.+.+|..++.+++|+.|++++|.+
T Consensus       209 ----------------------~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~  265 (328)
T 4fcg_A          209 ----------------------KSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSN  265 (328)
T ss_dssp             ----------------------CEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTT
T ss_pred             ----------------------CEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCc
Confidence                                  88999999999 4777899999999999999999999999999999999999999999


Q ss_pred             cccCCcCCcCCCCCCEEEcccCcCcccCCCC-cccCcccccccc
Q 036216          614 TGEIPQSMSSLTFLNHLNLSNNYLTGKIPSS-TQLQSFNASCFL  656 (695)
Q Consensus       614 ~~~~p~~l~~l~~L~~L~ls~N~l~~~iP~~-~~~~~~~~~~~~  656 (695)
                      .+.+|..+..+++|++|++++|++.|.+|+. ..+..+....+.
T Consensus       266 ~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~  309 (328)
T 4fcg_A          266 LLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP  309 (328)
T ss_dssp             CCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred             hhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence            9999999999999999999999999999986 556665555443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=3.5e-26  Score=243.60  Aligned_cols=248  Identities=22%  Similarity=0.225  Sum_probs=212.3

Q ss_pred             cceEecccccceeecCCCCCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeCC
Q 036216          313 LSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLS  392 (695)
Q Consensus       313 L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls  392 (695)
                      ...++.++..+.......+++++.|++++|.+++..+.    .|..+++|+.|++++|.+.+..+..|.++++|++|+++
T Consensus        56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~----~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQAD----TFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTT----TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHH----HcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence            34455555555543334456888888888888765444    34468999999999999998888899999999999999


Q ss_pred             CCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCccccc
Q 036216          393 NNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGP  472 (695)
Q Consensus       393 ~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  472 (695)
                      +|.+++..+..|..+++|++|++++|++....+..|..+++|+.|++++|...+.++...+..+++|+.|++++|++++.
T Consensus       132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~  211 (452)
T 3zyi_A          132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM  211 (452)
T ss_dssp             SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred             CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence            99999777778999999999999999999887888999999999999997666778776666899999999999999854


Q ss_pred             CCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhc
Q 036216          473 LPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEIL  552 (695)
Q Consensus       473 ~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  552 (695)
                       | .+..+++|++|++++|++++..|..|.++++|                                             
T Consensus       212 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L---------------------------------------------  244 (452)
T 3zyi_A          212 -P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSL---------------------------------------------  244 (452)
T ss_dssp             -C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTC---------------------------------------------
T ss_pred             -c-cccccccccEEECcCCcCcccCcccccCccCC---------------------------------------------
Confidence             4 58899999999999999998888888877766                                             


Q ss_pred             ccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCccc
Q 036216          553 NLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFT  614 (695)
Q Consensus       553 ~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~  614 (695)
                         +.|++++|++++..|..|..+++|++|+|++|++++..++.|..+++|+.|+|++|.+.
T Consensus       245 ---~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          245 ---KKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             ---CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             ---CEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence               78999999999999999999999999999999999777788899999999999999875

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=4.1e-26  Score=242.13  Aligned_cols=248  Identities=24%  Similarity=0.262  Sum_probs=209.6

Q ss_pred             cceEecccccceeecCCCCCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeCC
Q 036216          313 LSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLS  392 (695)
Q Consensus       313 L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls  392 (695)
                      ...++..+..+.......+++++.|++++|.+++..+.    .|.++++|++|++++|.+.+..+..|.++++|++|+++
T Consensus        45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~----~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVN----SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTT----TTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred             CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHH----HhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence            34555555555544444456788888888888754433    44568999999999999998878889999999999999


Q ss_pred             CCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCccccc
Q 036216          393 NNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGP  472 (695)
Q Consensus       393 ~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  472 (695)
                      +|.+++..+..|..+++|++|++++|++....+..|..+++|++|++++|...+.++...+..+++|+.|++++|+++ .
T Consensus       121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~  199 (440)
T 3zyj_A          121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-E  199 (440)
T ss_dssp             SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-S
T ss_pred             CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-c
Confidence            999997777789999999999999999998888889999999999999976667777766668999999999999998 4


Q ss_pred             CCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhc
Q 036216          473 LPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEIL  552 (695)
Q Consensus       473 ~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  552 (695)
                      +| .+..+++|++|++++|++++..|..|.++++|                                             
T Consensus       200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L---------------------------------------------  233 (440)
T 3zyj_A          200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHL---------------------------------------------  233 (440)
T ss_dssp             CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTC---------------------------------------------
T ss_pred             cc-ccCCCcccCEEECCCCccCccChhhhccCccC---------------------------------------------
Confidence            45 58889999999999999998888888877766                                             


Q ss_pred             ccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCccc
Q 036216          553 NLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFT  614 (695)
Q Consensus       553 ~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~  614 (695)
                         +.|++++|++++..+..|..+++|++|+|++|++++..++.|..+++|+.|+|++|.+.
T Consensus       234 ---~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          234 ---QKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             ---CEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             ---CEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence               78899999999988999999999999999999999887888899999999999999875

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=9.4e-27  Score=232.01  Aligned_cols=266  Identities=18%  Similarity=0.210  Sum_probs=206.4

Q ss_pred             cEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEE
Q 036216          335 TVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLH  414 (695)
Q Consensus       335 ~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~  414 (695)
                      ++++.+++.++.. |..+      .+++++|++++|.+++..+..|..+++|++|++++|.+++..|..|..+++|++|+
T Consensus        14 ~~~~c~~~~l~~i-p~~~------~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   86 (285)
T 1ozn_A           14 VTTSCPQQGLQAV-PVGI------PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLD   86 (285)
T ss_dssp             CEEECCSSCCSSC-CTTC------CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             eEEEcCcCCcccC-CcCC------CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEe
Confidence            4566666665532 2211      34778888888888877667788889999999999988887788888899999999


Q ss_pred             CcCCc-ceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcC
Q 036216          415 LRKNR-LSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNL  493 (695)
Q Consensus       415 l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l  493 (695)
                      +++|. +....+..+..+++|++|++++|.+.+..|..+. .+++|++|++++|++.+..+..+..+++|++|++++|++
T Consensus        87 l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  165 (285)
T 1ozn_A           87 LSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR-GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI  165 (285)
T ss_dssp             CCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhh-CCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcc
Confidence            99997 7766678888899999999999988665555554 689999999999999877777788999999999999999


Q ss_pred             cccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCccccccCCccc
Q 036216          494 SGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGL  573 (695)
Q Consensus       494 ~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l  573 (695)
                      ++..+..+..+++|                                                +.|++++|++++..|..|
T Consensus       166 ~~~~~~~~~~l~~L------------------------------------------------~~L~l~~n~l~~~~~~~~  197 (285)
T 1ozn_A          166 SSVPERAFRGLHSL------------------------------------------------DRLLLHQNRVAHVHPHAF  197 (285)
T ss_dssp             CEECTTTTTTCTTC------------------------------------------------CEEECCSSCCCEECTTTT
T ss_pred             cccCHHHhcCcccc------------------------------------------------CEEECCCCcccccCHhHc
Confidence            86555567666655                                                788999999998889999


Q ss_pred             cCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEEcccCcCcccCCCC---cccCcc
Q 036216          574 TNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSS---TQLQSF  650 (695)
Q Consensus       574 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~iP~~---~~~~~~  650 (695)
                      ..+++|++|++++|.+++..++.++.+++|+.|++++|.+....+.. .-...++.+..+.+.+.+..|+.   ..+..+
T Consensus       198 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l  276 (285)
T 1ozn_A          198 RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRL  276 (285)
T ss_dssp             TTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGTTCBGGGS
T ss_pred             cCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhCCcChhhc
Confidence            99999999999999999777677999999999999999998543321 11233555667888888888875   234444


Q ss_pred             ccccccC
Q 036216          651 NASCFLG  657 (695)
Q Consensus       651 ~~~~~~~  657 (695)
                      ....+.|
T Consensus       277 ~~~~l~~  283 (285)
T 1ozn_A          277 AANDLQG  283 (285)
T ss_dssp             CGGGSCC
T ss_pred             CHHHhcc
Confidence            4444444

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=2.8e-27  Score=239.26  Aligned_cols=256  Identities=20%  Similarity=0.177  Sum_probs=189.4

Q ss_pred             CcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEE
Q 036216          334 LTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSL  413 (695)
Q Consensus       334 L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L  413 (695)
                      ++..+++.+.+.    ......+..+++|++|++++|.+++..|..|..+++|++|++++|.+++..+  +..+++|++|
T Consensus        12 l~i~~ls~~~l~----~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L   85 (317)
T 3o53_A           12 YKIEKVTDSSLK----QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTL   85 (317)
T ss_dssp             EEEESCCTTTHH----HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEE
T ss_pred             eeEeeccccchh----hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEE
Confidence            344455555443    3333344457788999999998887777788889999999999998886544  7888999999


Q ss_pred             ECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcC
Q 036216          414 HLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNL  493 (695)
Q Consensus       414 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l  493 (695)
                      ++++|++++..     ..++|++|++++|.+.+..+.    .+++|++|++++|++++..+..+..+++|++|++++|++
T Consensus        86 ~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~----~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  156 (317)
T 3o53_A           86 DLNNNYVQELL-----VGPSIETLHAANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI  156 (317)
T ss_dssp             ECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC----CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCC
T ss_pred             ECcCCcccccc-----CCCCcCEEECCCCccCCcCcc----ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCC
Confidence            99999887543     348899999999988554443    467899999999999887777888889999999999998


Q ss_pred             cccCChhhh-hcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCccccccCCcc
Q 036216          494 SGTIPNCIH-NLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMG  572 (695)
Q Consensus       494 ~~~~p~~~~-~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~  572 (695)
                      ++..+..+. .+++|                                                ++|++++|.+++. | .
T Consensus       157 ~~~~~~~~~~~l~~L------------------------------------------------~~L~L~~N~l~~~-~-~  186 (317)
T 3o53_A          157 DTVNFAELAASSDTL------------------------------------------------EHLNLQYNFIYDV-K-G  186 (317)
T ss_dssp             CEEEGGGGGGGTTTC------------------------------------------------CEEECTTSCCCEE-E-C
T ss_pred             CcccHHHHhhccCcC------------------------------------------------CEEECCCCcCccc-c-c
Confidence            866655543 34444                                                7888888888755 2 2


Q ss_pred             ccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEEcccCcCc-ccCCCC-cccCcc
Q 036216          573 LTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLT-GKIPSS-TQLQSF  650 (695)
Q Consensus       573 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~-~~iP~~-~~~~~~  650 (695)
                      ...+++|++|++++|++++ +|..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|++. +.+|.. ..+..+
T Consensus       187 ~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L  264 (317)
T 3o53_A          187 QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV  264 (317)
T ss_dssp             CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHH
T ss_pred             ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccc
Confidence            3457888888888888884 4555888888888888888888 57878888888888888888887 555543 333333


Q ss_pred             cccccc
Q 036216          651 NASCFL  656 (695)
Q Consensus       651 ~~~~~~  656 (695)
                      ......
T Consensus       265 ~~l~l~  270 (317)
T 3o53_A          265 QTVAKQ  270 (317)
T ss_dssp             HHHHHH
T ss_pred             eEEECC
Confidence            333333

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=1.5e-27  Score=240.74  Aligned_cols=203  Identities=22%  Similarity=0.261  Sum_probs=133.7

Q ss_pred             CCCCCCEEeCCCCcccccCCccc--cCCCCCcEEECcCCcceeeCCccccCC-----CCCcEEEcCCCcccccCChhhhh
Q 036216          382 SYQNLMALDLSNNKFTGNLPTSL--GSLSSLVSLHLRKNRLSGTIPILLKNC-----TSLVTLDVGENEVFGNIPSWFGE  454 (695)
Q Consensus       382 ~~~~L~~L~ls~n~~~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~~~~~~~~~~~~  454 (695)
                      ++++|++|++++|.+++..|..+  ..+++|++|++++|++++. |..+..+     ++|++|++++|.+.+..|..+. 
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~-  170 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR-  170 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC-
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc-
Confidence            45555566666555555555543  5555666666666655544 4444444     5566666666665443334443 


Q ss_pred             cCCCCcEEEcCCCccccc--CCccc--cCCCCCCEEeCCCCcCccc--CC-hhhhhcccCcccCCCCCCcccccCCCCCC
Q 036216          455 RFSRMVLLILRSNNFDGP--LPTEL--CDLAFLQILDLADNNLSGT--IP-NCIHNLTAMATVNPFTGNAIEYSFPLNST  527 (695)
Q Consensus       455 ~l~~L~~L~l~~n~~~~~--~~~~l--~~l~~L~~L~L~~n~l~~~--~p-~~~~~l~~L~~l~~~~~~~l~~~~~~~~~  527 (695)
                      .+++|++|++++|++.+.  .+..+  ..+++|++|++++|++++.  ++ ..+..+                       
T Consensus       171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l-----------------------  227 (312)
T 1wwl_A          171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAAR-----------------------  227 (312)
T ss_dssp             CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTT-----------------------
T ss_pred             cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcC-----------------------
Confidence            456666666666665443  22233  6778888888888877621  11 112222                       


Q ss_pred             CCCCccccceEEEecCCcchhhhhcccccEEEcCCccccccCC-ccccCCCCCCEEeccCCcccccCCccccCcCCCCEE
Q 036216          528 IGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLP-MGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESI  606 (695)
Q Consensus       528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  606 (695)
                                               +.|+.|++++|++++..| ..+..+++|++|++++|+++ .+|..+.  ++|+.|
T Consensus       228 -------------------------~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L  279 (312)
T 1wwl_A          228 -------------------------VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVL  279 (312)
T ss_dssp             -------------------------CCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEE
T ss_pred             -------------------------CCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEE
Confidence                                     334788888888887665 45667889999999999998 7787776  889999


Q ss_pred             ECCCCcccccCCcCCcCCCCCCEEEcccCcCcc
Q 036216          607 DFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTG  639 (695)
Q Consensus       607 ~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~  639 (695)
                      ++++|++++. |. +..+++|++|++++|++++
T Consensus       280 ~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          280 DLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             ECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             ECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            9999999865 66 8899999999999999875

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=9.3e-27  Score=234.90  Aligned_cols=247  Identities=18%  Similarity=0.235  Sum_probs=201.3

Q ss_pred             hccccceeecccccccCCCCccccCCCCCCEEeCCCCccc-ccCCcccc-------CCCCCcEEECcCCcceeeCCccc-
Q 036216          358 ETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFT-GNLPTSLG-------SLSSLVSLHLRKNRLSGTIPILL-  428 (695)
Q Consensus       358 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~-~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~~-  428 (695)
                      ..++|+.+++++|.+  .+|..+...  |+.|++++|.+. ..+|..+.       .+++|++|++++|++++..|..+ 
T Consensus        41 ~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  116 (312)
T 1wwl_A           41 GGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL  116 (312)
T ss_dssp             EEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred             cCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence            356788888888888  566655543  888888888884 45565554       68999999999999998888876 


Q ss_pred             -cCCCCCcEEEcCCCcccccCChhhhhcC-----CCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCcccC--Chh
Q 036216          429 -KNCTSLVTLDVGENEVFGNIPSWFGERF-----SRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTI--PNC  500 (695)
Q Consensus       429 -~~l~~L~~L~l~~n~~~~~~~~~~~~~l-----~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~--p~~  500 (695)
                       ..+++|++|++++|.+.+. |..+. .+     ++|++|++++|++.+..|..++++++|++|++++|++.+.+  |..
T Consensus       117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~-~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  194 (312)
T 1wwl_A          117 EATGPDLNILNLRNVSWATR-DAWLA-ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA  194 (312)
T ss_dssp             SCCSCCCSEEEEESCBCSSS-SSHHH-HHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred             HhcCCCccEEEccCCCCcch-hHHHH-HHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence             8999999999999999766 76665 45     99999999999999888899999999999999999987542  222


Q ss_pred             h--hhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCccccc--cCC-ccccC
Q 036216          501 I--HNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSG--TLP-MGLTN  575 (695)
Q Consensus       501 ~--~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~--~~p-~~l~~  575 (695)
                      +  ..+++                                                |++|++++|++++  .++ ..+..
T Consensus       195 ~~~~~l~~------------------------------------------------L~~L~L~~N~l~~~~~~~~~~~~~  226 (312)
T 1wwl_A          195 LCPLKFPT------------------------------------------------LQVLALRNAGMETPSGVCSALAAA  226 (312)
T ss_dssp             SCTTSCTT------------------------------------------------CCEEECTTSCCCCHHHHHHHHHHT
T ss_pred             HHhccCCC------------------------------------------------CCEEECCCCcCcchHHHHHHHHhc
Confidence            2  33333                                                4899999999983  222 34568


Q ss_pred             CCCCCEEeccCCcccccCC-ccccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEEcccCcCcccCCCCcccCcccccc
Q 036216          576 LKAVQSLNLSYNIFTGRIP-ETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSSTQLQSFNASC  654 (695)
Q Consensus       576 l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~iP~~~~~~~~~~~~  654 (695)
                      +++|++|++++|++++.+| ..+..+++|+.|++++|+++ .+|..+.  ++|++|++++|++++. |....+..++...
T Consensus       227 l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~  302 (312)
T 1wwl_A          227 RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLS  302 (312)
T ss_dssp             TCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEE
T ss_pred             CCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEe
Confidence            8999999999999997775 45677899999999999999 7888877  8999999999999987 7777788888888


Q ss_pred             ccCCcccC
Q 036216          655 FLGNNLCG  662 (695)
Q Consensus       655 ~~~n~l~~  662 (695)
                      +.+|.+.+
T Consensus       303 L~~N~l~~  310 (312)
T 1wwl_A          303 LKGNPFLD  310 (312)
T ss_dssp             CTTCTTTC
T ss_pred             ccCCCCCC
Confidence            88876554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=1.5e-25  Score=239.76  Aligned_cols=224  Identities=21%  Similarity=0.171  Sum_probs=191.0

Q ss_pred             hhccccceeecccccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcE
Q 036216          357 NETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVT  436 (695)
Q Consensus       357 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  436 (695)
                      ..+++|+.|++++|.+++..|..|..+++|++|++++|.+++..|  +..+++|++|++++|.+++..+     .++|++
T Consensus        31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~  103 (487)
T 3oja_A           31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIET  103 (487)
T ss_dssp             TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCE
T ss_pred             ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCE
Confidence            346689999999999998888889999999999999999987655  8899999999999999985443     389999


Q ss_pred             EEcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCcccCChhhh-hcccCcccCCCCC
Q 036216          437 LDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIH-NLTAMATVNPFTG  515 (695)
Q Consensus       437 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~l~~~~~  515 (695)
                      |++++|.+.+..+.    .+++|+.|++++|.+++..|..++.+++|++|++++|.+++..|..+. .+++|        
T Consensus       104 L~L~~N~l~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L--------  171 (487)
T 3oja_A          104 LHAANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL--------  171 (487)
T ss_dssp             EECCSSCCCCEEEC----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC--------
T ss_pred             EECcCCcCCCCCcc----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcc--------
Confidence            99999999665543    478999999999999998888899999999999999999987777665 45554        


Q ss_pred             CcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCc
Q 036216          516 NAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPE  595 (695)
Q Consensus       516 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~  595 (695)
                                                              +.|+|++|.+++..+  +..+++|++|+|++|.+++. |.
T Consensus       172 ----------------------------------------~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~-~~  208 (487)
T 3oja_A          172 ----------------------------------------EHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFM-GP  208 (487)
T ss_dssp             ----------------------------------------CEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEE-CG
T ss_pred             ----------------------------------------cEEecCCCccccccc--cccCCCCCEEECCCCCCCCC-CH
Confidence                                                    889999999997633  44689999999999999964 45


Q ss_pred             cccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEEcccCcCc-ccCCC
Q 036216          596 TIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLT-GKIPS  643 (695)
Q Consensus       596 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~-~~iP~  643 (695)
                      .++.+++|+.|+|++|.+++ +|..+..+++|+.|++++|++. +.+|.
T Consensus       209 ~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~  256 (487)
T 3oja_A          209 EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRD  256 (487)
T ss_dssp             GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHH
T ss_pred             hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHH
Confidence            58999999999999999994 7888999999999999999998 55554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=2.5e-24  Score=234.51  Aligned_cols=263  Identities=25%  Similarity=0.294  Sum_probs=182.8

Q ss_pred             ccceeecccccccccccCccccCccceEecccccceeecCCCCCCCcEEEccCCcCCCccchhhhhhhhhccccceeecc
Q 036216          289 QLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLD  368 (695)
Q Consensus       289 ~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~  368 (695)
                      +++.|++++|.++..+..+.  ++|++|++++|.+.. +|..+++|++|++++|++++ ++.       .+++|++|+++
T Consensus        41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~-lp~~l~~L~~L~Ls~N~l~~-lp~-------~l~~L~~L~Ls  109 (622)
T 3g06_A           41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTS-LPALPPELRTLEVSGNQLTS-LPV-------LPPGLLELSIF  109 (622)
T ss_dssp             CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSC-CCCCCTTCCEEEECSCCCSC-CCC-------CCTTCCEEEEC
T ss_pred             CCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCC-CCCcCCCCCEEEcCCCcCCc-CCC-------CCCCCCEEECc
Confidence            35555555555553322222  455555555555552 33345666777777776653 222       25677777777


Q ss_pred             cccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccC
Q 036216          369 RNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNI  448 (695)
Q Consensus       369 ~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~  448 (695)
                      +|.+++ +|.   .+++|+.|++++|++++ +|..   +++|++|++++|++++ +|.   .+++|+.|++++|.+. .+
T Consensus       110 ~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l  176 (622)
T 3g06_A          110 SNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLT-SL  176 (622)
T ss_dssp             SCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CC
T ss_pred             CCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCC-CC
Confidence            777764 333   45778888888888774 4543   3788888888888774 343   3467888888888873 46


Q ss_pred             ChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCC
Q 036216          449 PSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTI  528 (695)
Q Consensus       449 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~  528 (695)
                      |.    .+++|+.|++++|++++ +|..   +++|+.|++++|.++ .+|..                            
T Consensus       177 ~~----~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~----------------------------  219 (622)
T 3g06_A          177 PM----LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL----------------------------  219 (622)
T ss_dssp             CC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCC----------------------------
T ss_pred             cc----cCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCC----------------------------
Confidence            62    57788888888888874 4432   467888888888877 33321                            


Q ss_pred             CCCccccceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEEC
Q 036216          529 GPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDF  608 (695)
Q Consensus       529 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  608 (695)
                                             ++.|+.|++++|++++ +|   ..+++|++|++++|.++ .+|.   .+++|+.|+|
T Consensus       220 -----------------------~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~L  268 (622)
T 3g06_A          220 -----------------------PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSV  268 (622)
T ss_dssp             -----------------------CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEEC
T ss_pred             -----------------------CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeC
Confidence                                   1234788999999885 55   45688999999999998 5666   5788999999


Q ss_pred             CCCcccccCCcCCcCCCCCCEEEcccCcCcccCCCC
Q 036216          609 SVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSS  644 (695)
Q Consensus       609 s~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~iP~~  644 (695)
                      ++|+++ .+|..+..+++|+.|++++|++++.+|..
T Consensus       269 s~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~  303 (622)
T 3g06_A          269 YRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA  303 (622)
T ss_dssp             CSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHH
T ss_pred             CCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHH
Confidence            999999 78989999999999999999999888764

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.93  E-value=1.4e-24  Score=215.14  Aligned_cols=214  Identities=22%  Similarity=0.193  Sum_probs=163.3

Q ss_pred             CCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEE
Q 036216          384 QNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLI  463 (695)
Q Consensus       384 ~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~  463 (695)
                      ++|++|++++|.+++..+..|..+++|++|++++|++.+..+..|..+++|++|++++|.+.+..+..+. .+++|++|+
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~  106 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS-GLSSLQKLV  106 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT-TCTTCCEEE
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhc-CCccccEEE
Confidence            4677778877777766666777777788888888777766666777777888888888777555444443 677888888


Q ss_pred             cCCCcccccCCccccCCCCCCEEeCCCCcCccc-CChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEec
Q 036216          464 LRSNNFDGPLPTELCDLAFLQILDLADNNLSGT-IPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTK  542 (695)
Q Consensus       464 l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  542 (695)
                      +++|++.+..+..+..+++|++|++++|++++. +|..+..+++|                                   
T Consensus       107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L-----------------------------------  151 (276)
T 2z62_A          107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL-----------------------------------  151 (276)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC-----------------------------------
T ss_pred             CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCC-----------------------------------
Confidence            888887766666778888888888888888753 46677666655                                   


Q ss_pred             CCcchhhhhcccccEEEcCCccccccCCccccCCCCCC----EEeccCCcccccCCccccCcCCCCEEECCCCcccccCC
Q 036216          543 GVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQ----SLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIP  618 (695)
Q Consensus       543 ~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~----~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p  618 (695)
                                   ++|++++|++++..+..+..+++|+    +|++++|++++..+..+. ..+|+.|++++|++++..+
T Consensus       152 -------------~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~  217 (276)
T 2z62_A          152 -------------EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPD  217 (276)
T ss_dssp             -------------CEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCT
T ss_pred             -------------CEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCH
Confidence                         7778888888877777777777776    899999999866555554 4589999999999997666


Q ss_pred             cCCcCCCCCCEEEcccCcCcccCCCCccc
Q 036216          619 QSMSSLTFLNHLNLSNNYLTGKIPSSTQL  647 (695)
Q Consensus       619 ~~l~~l~~L~~L~ls~N~l~~~iP~~~~~  647 (695)
                      ..+..+++|++|++++|++.+..|....+
T Consensus       218 ~~~~~l~~L~~L~l~~N~~~c~c~~l~~l  246 (276)
T 2z62_A          218 GIFDRLTSLQKIWLHTNPWDCSCPRIDYL  246 (276)
T ss_dssp             TTTTTCCSCCEEECCSSCBCCCTTTTHHH
T ss_pred             hHhcccccccEEEccCCcccccCCchHHH
Confidence            77889999999999999999888765433

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=3.2e-26  Score=231.47  Aligned_cols=260  Identities=19%  Similarity=0.183  Sum_probs=169.4

Q ss_pred             CcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCC
Q 036216            5 LVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLP   84 (695)
Q Consensus         5 L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~   84 (695)
                      ++..+++.+.+...+...+..+++|++|++++|.+++. .|..+..+++|++|++++|.+++..+  +..+++|++|+++
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls   88 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN   88 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCC-CHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcC-CHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence            44555666666555555566667788888888888775 56677788888888888888775443  7778888888888


Q ss_pred             CCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCcc
Q 036216           85 FNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSS  164 (695)
Q Consensus        85 ~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~  164 (695)
                      +|.+++.     ...++|++|++++|.+.+..+.   .+++|++|++++|++.+..+.    .++.+.. |++|++++|.
T Consensus        89 ~n~l~~l-----~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~----~~~~l~~-L~~L~Ls~N~  155 (317)
T 3o53_A           89 NNYVQEL-----LVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDL----DEGCRSR-VQYLDLKLNE  155 (317)
T ss_dssp             SSEEEEE-----EECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGB----CTGGGSS-EEEEECTTSC
T ss_pred             CCccccc-----cCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccch----hhhccCC-CCEEECCCCC
Confidence            8877642     2347788888888887754433   356777888888877765554    3444444 7777777777


Q ss_pred             cccccchhc-CCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCCCCccE
Q 036216          165 ISGHLTDQL-GQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIE  243 (695)
Q Consensus       165 ~~~~~~~~l-~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~  243 (695)
                      +.+..+..+ ..+++|++|++++|.++              .++.  ...+++|+.|++++|.++...+ .+..+++|++
T Consensus       156 l~~~~~~~~~~~l~~L~~L~L~~N~l~--------------~~~~--~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~  218 (317)
T 3o53_A          156 IDTVNFAELAASSDTLEHLNLQYNFIY--------------DVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTW  218 (317)
T ss_dssp             CCEEEGGGGGGGTTTCCEEECTTSCCC--------------EEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSE
T ss_pred             CCcccHHHHhhccCcCCEEECCCCcCc--------------cccc--ccccccCCEEECCCCcCCcchh-hhcccCcccE
Confidence            777666655 35677777777777765              2221  2246677777777777765433 3666666777


Q ss_pred             EEccCCCCCCCCCccccCCCCCCEEEcccCCCccccChHHhhcccccceeecccc
Q 036216          244 LGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHN  298 (695)
Q Consensus       244 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n  298 (695)
                      |++++|.+.. +|..+..+++|+.|++++|.+.......++..+++|+.++++++
T Consensus       219 L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~  272 (317)
T 3o53_A          219 ISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV  272 (317)
T ss_dssp             EECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             EECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence            7777766663 45556666667777777766652222333455566666666633

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=1.2e-27  Score=265.16  Aligned_cols=422  Identities=15%  Similarity=0.069  Sum_probs=197.5

Q ss_pred             cCCCCCCCCCEEECCCCCCC-CCC-C------------chhhcCCCCCCEEEcCCCcCcccCCccCC-CCCCCCEEeCCC
Q 036216           21 LPVANFSTLTTLDLSHNQFD-NSF-V------------PAWVFGLSRLHFLNLGYNNFQGPIPEGLQ-NLTSLKHLGLPF   85 (695)
Q Consensus        21 ~~~~~l~~L~~L~Ls~n~i~-~~~-~------------~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~L~~   85 (695)
                      ..+..+++|++|+++++... +.. .            +.....+++|++|+|++|.+++..+..+. .+++|++|++++
T Consensus        60 ~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~  139 (594)
T 2p1m_B           60 TVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSS  139 (594)
T ss_dssp             HHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEES
T ss_pred             HHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCC
Confidence            34556677777777776421 100 1            11223567777777777776655444553 567777777777


Q ss_pred             C-CCCCC-chhhhcCCCCCCEEEcccCcCCcccchhhc----CCCCCCEEEccCCcCccccchhhhhhhcccccccceEE
Q 036216           86 N-HFSSS-VPKWFDRLTHLEHLSLSYNSLEGRIPRSMA----RLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLA  159 (695)
Q Consensus        86 n-~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~----~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~  159 (695)
                      | .++.. ++..+.++++|++|++++|.+++..+..+.    .+++|++|++++|. .......+......+++ |++|+
T Consensus       140 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~-L~~L~  217 (594)
T 2p1m_B          140 CEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPN-LKSLK  217 (594)
T ss_dssp             CEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTT-CCEEE
T ss_pred             cCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCC-CcEEe
Confidence            7 34321 334444677777777777776544333333    55677777777765 11112222222333344 77777


Q ss_pred             ccCcccccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEE-cccccceeecCCCCCCC
Q 036216          160 LASSSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFL-VGANKLTLKVKRDWIPP  238 (695)
Q Consensus       160 L~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~-l~~n~l~~~~~~~~~~~  238 (695)
                      +++|...+.++..+..+++|++|+++.+...      +..+.+. .++. .+.++++|+.+. +.....           
T Consensus       218 L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~------~~~~~~~-~l~~-~l~~~~~L~~Ls~~~~~~~-----------  278 (594)
T 2p1m_B          218 LNRAVPLEKLATLLQRAPQLEELGTGGYTAE------VRPDVYS-GLSV-ALSGCKELRCLSGFWDAVP-----------  278 (594)
T ss_dssp             CCTTSCHHHHHHHHHHCTTCSEEECSBCCCC------CCHHHHH-HHHH-HHHTCTTCCEEECCBTCCG-----------
T ss_pred             cCCCCcHHHHHHHHhcCCcceEcccccccCc------cchhhHH-HHHH-HHhcCCCcccccCCcccch-----------
Confidence            7766322225566666777777766544310      1111111 1222 455666666652 211110           


Q ss_pred             CCccEEEccCCCCCCCCCccccCCCCCCEEEcccCCCccccChHHhhcccccceeecccccccc-cccCc-cccCccceE
Q 036216          239 FQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHG-ELTNL-TKASQLSYL  316 (695)
Q Consensus       239 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~-~~~~~L~~L  316 (695)
                                    ..++..+..+++|++|++++|.+.+.....+...+++|+.|++++| +.. .+..+ ..+++|++|
T Consensus       279 --------------~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L  343 (594)
T 2p1m_B          279 --------------AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLREL  343 (594)
T ss_dssp             --------------GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEE
T ss_pred             --------------hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEE
Confidence                          1122222234445555555544433322333334455555555544 211 11111 113334444


Q ss_pred             ecccccceeecCCCCCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCcccc-CCCCCCEEeCC--C
Q 036216          317 SLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWM-SYQNLMALDLS--N  393 (695)
Q Consensus       317 ~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~~~L~~L~ls--~  393 (695)
                      ++.++.-.|            ....+.+++.....+   ...+++|+.|.+..+.+++.....+. .+++|+.|+++  +
T Consensus       344 ~L~~~~~~g------------~~~~~~l~~~~l~~l---~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~  408 (594)
T 2p1m_B          344 RVFPSEPFV------------MEPNVALTEQGLVSV---SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIE  408 (594)
T ss_dssp             EEECSCTTC------------SSCSSCCCHHHHHHH---HHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESS
T ss_pred             EEecCcccc------------cccCCCCCHHHHHHH---HHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeeccc
Confidence            432211000            001112221111111   11244555555544444433222222 34555555555  2


Q ss_pred             ----Ccccc-----cCCccccCCCCCcEEECcCCcceeeCCccccC-CCCCcEEEcCCCcccccCChhhhhcCCCCcEEE
Q 036216          394 ----NKFTG-----NLPTSLGSLSSLVSLHLRKNRLSGTIPILLKN-CTSLVTLDVGENEVFGNIPSWFGERFSRMVLLI  463 (695)
Q Consensus       394 ----n~~~~-----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~  463 (695)
                          +.++.     .++..+..+++|++|++++ .+++..+..+.. +++|+.|++++|.+++..+..+...+++|++|+
T Consensus       409 ~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~  487 (594)
T 2p1m_B          409 PKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLE  487 (594)
T ss_dssp             TTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEE
T ss_pred             CCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEE
Confidence                23321     1111234556666666655 443333333333 566666666666654444444434566666666


Q ss_pred             cCCCcccccCCc-cccCCCCCCEEeCCCCcCc
Q 036216          464 LRSNNFDGPLPT-ELCDLAFLQILDLADNNLS  494 (695)
Q Consensus       464 l~~n~~~~~~~~-~l~~l~~L~~L~L~~n~l~  494 (695)
                      +++|.+++.... ....+++|++|++++|+++
T Consensus       488 L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          488 IRDCPFGDKALLANASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             EESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred             CcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence            666666433222 2334566677777666664

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=2.5e-24  Score=234.50  Aligned_cols=268  Identities=24%  Similarity=0.318  Sum_probs=178.6

Q ss_pred             CccEEEccCCCCCCCCCccccCCCCCCEEEcccCCCccccChHHhhcccccceeecccccccccccCccccCccceEecc
Q 036216          240 QLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLI  319 (695)
Q Consensus       240 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~  319 (695)
                      +++.|+++++.+. .+|..+.  ++|++|++++|.++ .+|.    .+++|++|++++|.+++                 
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~-----------------   95 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTS-----------------   95 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSC-----------------
T ss_pred             CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCc-----------------
Confidence            3555555555554 3333332  45555555555554 3443    23445555555554442                 


Q ss_pred             cccceeecCCCCCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeCCCCccccc
Q 036216          320 ANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGN  399 (695)
Q Consensus       320 ~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~  399 (695)
                             +|..+++|++|++++|.+++...        .+++|+.|++++|.+++ +|..   +++|++|++++|.+++ 
T Consensus        96 -------lp~~l~~L~~L~Ls~N~l~~l~~--------~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-  155 (622)
T 3g06_A           96 -------LPVLPPGLLELSIFSNPLTHLPA--------LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-  155 (622)
T ss_dssp             -------CCCCCTTCCEEEECSCCCCCCCC--------CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-
T ss_pred             -------CCCCCCCCCEEECcCCcCCCCCC--------CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-
Confidence                   22244556666666665553211        24567777777777663 4432   4778888888888874 


Q ss_pred             CCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCccccC
Q 036216          400 LPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCD  479 (695)
Q Consensus       400 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~  479 (695)
                      +|.   .+++|+.|++++|.+++ +|   ..+++|+.|++++|.+. .+|.    .+++|+.|++++|.++. +|.   .
T Consensus       156 l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~-~l~~----~~~~L~~L~L~~N~l~~-l~~---~  219 (622)
T 3g06_A          156 LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLA-SLPT----LPSELYKLWAYNNRLTS-LPA---L  219 (622)
T ss_dssp             CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSS-CCC---C
T ss_pred             cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCC-CCCC----ccchhhEEECcCCcccc-cCC---C
Confidence            443   34678888888888874 44   34678888888888874 4554    35788888888888873 443   2


Q ss_pred             CCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEE
Q 036216          480 LAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIID  559 (695)
Q Consensus       480 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  559 (695)
                      +++|++|++++|++++ +|.   .++                                                .|+.|+
T Consensus       220 ~~~L~~L~Ls~N~L~~-lp~---~l~------------------------------------------------~L~~L~  247 (622)
T 3g06_A          220 PSGLKELIVSGNRLTS-LPV---LPS------------------------------------------------ELKELM  247 (622)
T ss_dssp             CTTCCEEECCSSCCSC-CCC---CCT------------------------------------------------TCCEEE
T ss_pred             CCCCCEEEccCCccCc-CCC---CCC------------------------------------------------cCcEEE
Confidence            4789999999998873 441   112                                                247889


Q ss_pred             cCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCcCCC
Q 036216          560 FSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLT  625 (695)
Q Consensus       560 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~  625 (695)
                      +++|+|+ .+|.   .+++|+.|+|++|.++ .+|..|+++++|+.|+|++|.+++..|..+..++
T Consensus       248 Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          248 VSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             CCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred             CCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence            9999988 5665   5788999999999999 7788899999999999999999988888776554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=5e-27  Score=260.29  Aligned_cols=86  Identities=8%  Similarity=-0.000  Sum_probs=51.4

Q ss_pred             cccEEEcCCccccccCCccc-cCCCCCCEEeccCCcccccCCc-cccCcCCCCEEECCCCcccccCCcCC-cCCCCCCEE
Q 036216          554 LVRIIDFSKNLFSGTLPMGL-TNLKAVQSLNLSYNIFTGRIPE-TIGTMRSLESIDFSVNKFTGEIPQSM-SSLTFLNHL  630 (695)
Q Consensus       554 ~l~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L  630 (695)
                      .|+.|++++|.+++..+..+ ..+++|++|+|++|.+++..+. .+..+++|+.|++++|.++......+ ..++.|+..
T Consensus       457 ~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~  536 (594)
T 2p1m_B          457 KMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVE  536 (594)
T ss_dssp             TCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEE
T ss_pred             hccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEE
Confidence            34677777777765444444 5567777777777777544333 33456777777777777754333333 345666655


Q ss_pred             EcccCcCcc
Q 036216          631 NLSNNYLTG  639 (695)
Q Consensus       631 ~ls~N~l~~  639 (695)
                      .+..+.-..
T Consensus       537 ~~~~~~~~~  545 (594)
T 2p1m_B          537 VIDERGAPD  545 (594)
T ss_dssp             EECSSSCGG
T ss_pred             EecCCCccc
Confidence            555554433

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.92  E-value=1.5e-24  Score=214.12  Aligned_cols=224  Identities=18%  Similarity=0.163  Sum_probs=175.3

Q ss_pred             ccccceeecccccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEE
Q 036216          359 TMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLD  438 (695)
Q Consensus       359 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  438 (695)
                      +..+..+.+..+.+.+..  ....+++|+.|++++|.+.. ++ .+..+++|++|++++|.+.+.  ..+..+++|++|+
T Consensus        18 ~~~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~   91 (272)
T 3rfs_A           18 FAETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLI   91 (272)
T ss_dssp             HHHHHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCC-CT-TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEE
T ss_pred             HHHHHHHHhcCccccccc--ccccccceeeeeeCCCCccc-cc-ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEE
Confidence            345556666666655442  34567788888888888763 33 477788888888888888753  3677888888888


Q ss_pred             cCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcc
Q 036216          439 VGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAI  518 (695)
Q Consensus       439 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l  518 (695)
                      +++|.+.+..+..+ ..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|           
T Consensus        92 L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-----------  159 (272)
T 3rfs_A           92 LTGNQLQSLPNGVF-DKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL-----------  159 (272)
T ss_dssp             CTTSCCCCCCTTTT-TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-----------
T ss_pred             CCCCccCccChhHh-cCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccC-----------
Confidence            88888854444333 368888888888888887777778888999999999998886666566666555           


Q ss_pred             cccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCcccc
Q 036216          519 EYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIG  598 (695)
Q Consensus       519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~  598 (695)
                                                           +.|++++|++++..+..+..+++|++|++++|++++..|..++
T Consensus       160 -------------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  202 (272)
T 3rfs_A          160 -------------------------------------TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFD  202 (272)
T ss_dssp             -------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred             -------------------------------------CEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHh
Confidence                                                 7888999999877777788999999999999999988888889


Q ss_pred             CcCCCCEEECCCCcccccCCcCCcCCCCCCEEEcccCcCcccCCCC
Q 036216          599 TMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSS  644 (695)
Q Consensus       599 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~iP~~  644 (695)
                      .+++|+.|++++|.+.+.       ++.|+.++++.|.++|.+|..
T Consensus       203 ~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~  241 (272)
T 3rfs_A          203 RLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNS  241 (272)
T ss_dssp             TCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCT
T ss_pred             CCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCc
Confidence            999999999999988754       457889999999999999975

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=1.9e-23  Score=206.00  Aligned_cols=207  Identities=19%  Similarity=0.235  Sum_probs=149.1

Q ss_pred             CCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEc
Q 036216          385 NLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLIL  464 (695)
Q Consensus       385 ~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l  464 (695)
                      +.+.++++++.++ .+|..+.  +++++|++++|++.+..+..|..+++|++|++++|.+ ..+|...+..+++|++|++
T Consensus        17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCC-SCCCTTTTSSCTTCCEEEC
T ss_pred             CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCcc-CeeChhhhcCCCCCCEEEC
Confidence            3455666666655 3444332  4566666666666655555566666666666666666 3444444345667777777


Q ss_pred             CCCcccccCCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCC
Q 036216          465 RSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGV  544 (695)
Q Consensus       465 ~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  544 (695)
                      ++|++.+..+..|..+++|++|++++|++++..+..|..+++|                                     
T Consensus        93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-------------------------------------  135 (270)
T 2o6q_A           93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL-------------------------------------  135 (270)
T ss_dssp             CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC-------------------------------------
T ss_pred             CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCC-------------------------------------
Confidence            7777765555666777788888888888776555556655554                                     


Q ss_pred             cchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCcCC
Q 036216          545 AADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSL  624 (695)
Q Consensus       545 ~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l  624 (695)
                                 ++|++++|++++..+..|..+++|++|++++|++++..+..|+.+++|+.|++++|++++..+..+..+
T Consensus       136 -----------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  204 (270)
T 2o6q_A          136 -----------TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSL  204 (270)
T ss_dssp             -----------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred             -----------CEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccc
Confidence                       777888888886666668889999999999999997777778999999999999999997766778999


Q ss_pred             CCCCEEEcccCcCcccCCC
Q 036216          625 TFLNHLNLSNNYLTGKIPS  643 (695)
Q Consensus       625 ~~L~~L~ls~N~l~~~iP~  643 (695)
                      ++|+.|++++|++....+.
T Consensus       205 ~~L~~L~l~~N~~~c~c~~  223 (270)
T 2o6q_A          205 EKLKMLQLQENPWDCTCNG  223 (270)
T ss_dssp             TTCCEEECCSSCBCCSSSS
T ss_pred             cCCCEEEecCCCeeCCCcc
Confidence            9999999999999866553

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=4.1e-25  Score=236.32  Aligned_cols=236  Identities=24%  Similarity=0.195  Sum_probs=194.1

Q ss_pred             CCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCC
Q 036216          331 SSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSL  410 (695)
Q Consensus       331 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L  410 (695)
                      +++|+.|++++|.+++..+..    |..+++|+.|++++|.+++..|  +..+++|++|++++|.+++..     ..++|
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L  101 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAAD----LAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSI  101 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGG----GTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTC
T ss_pred             CCCccEEEeeCCcCCCCCHHH----HhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCc
Confidence            347788888888877654443    3468899999999999886655  888999999999999998543     23899


Q ss_pred             cEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCcccc-CCCCCCEEeCC
Q 036216          411 VSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELC-DLAFLQILDLA  489 (695)
Q Consensus       411 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~-~l~~L~~L~L~  489 (695)
                      ++|++++|.+.+..+.   .+++|+.|++++|.+.+..|..+. .+++|+.|++++|.+++..|..+. .+++|++|+++
T Consensus       102 ~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls  177 (487)
T 3oja_A          102 ETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ  177 (487)
T ss_dssp             CEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGG-GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECT
T ss_pred             CEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhc-CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecC
Confidence            9999999999876554   357899999999999777676665 699999999999999988888876 79999999999


Q ss_pred             CCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCccccccC
Q 036216          490 DNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTL  569 (695)
Q Consensus       490 ~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~  569 (695)
                      +|.+++..+.  ..+                                                +.|+.|+|++|.+++. 
T Consensus       178 ~N~l~~~~~~--~~l------------------------------------------------~~L~~L~Ls~N~l~~~-  206 (487)
T 3oja_A          178 YNFIYDVKGQ--VVF------------------------------------------------AKLKTLDLSSNKLAFM-  206 (487)
T ss_dssp             TSCCCEEECC--CCC------------------------------------------------TTCCEEECCSSCCCEE-
T ss_pred             CCcccccccc--ccC------------------------------------------------CCCCEEECCCCCCCCC-
Confidence            9999854221  112                                                3348999999999964 


Q ss_pred             CccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCccc-ccCCcCCcCCCCCCEEEcc
Q 036216          570 PMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFT-GEIPQSMSSLTFLNHLNLS  633 (695)
Q Consensus       570 p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~ls  633 (695)
                      |..+..+++|+.|+|++|.++ .+|..++.+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus       207 ~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          207 GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             CHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            455999999999999999999 57888999999999999999998 6788888889999988887

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=1.6e-23  Score=207.50  Aligned_cols=224  Identities=21%  Similarity=0.211  Sum_probs=154.7

Q ss_pred             EEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCC
Q 036216            7 ELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFN   86 (695)
Q Consensus         7 ~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n   86 (695)
                      .++.++..++.+|.. +.  ++|++|++++|.+++. .+..+.++++|++|++++|.++...+..|.++++|++|++++|
T Consensus        11 ~~~c~~~~l~~ip~~-l~--~~l~~L~ls~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n   86 (276)
T 2z62_A           11 TYQCMELNFYKIPDN-LP--FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN   86 (276)
T ss_dssp             EEECTTSCCSSCCSS-SC--TTCCEEECTTCCCCEE-CTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             eEEecCCCccccCCC-CC--CCccEEECCCCccccc-CHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC
Confidence            456666667777652 22  4677777777777763 3446677777777777777777666667777777777777777


Q ss_pred             CCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccc-cchhhhhhhcccccccceEEccCccc
Q 036216           87 HFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQE-ISEILEIFSGCVSNGLESLALASSSI  165 (695)
Q Consensus        87 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~~~~~~L~~L~L~~n~~  165 (695)
                      .+++..+..|.++++|++|++++|.+.+..+..++++++|++|++++|.+.+. .|.    .++.+.. |++|++++|.+
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~----~~~~l~~-L~~L~Ls~N~l  161 (276)
T 2z62_A           87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE----YFSNLTN-LEHLDLSSNKI  161 (276)
T ss_dssp             CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG----GGGGCTT-CCEEECCSSCC
T ss_pred             ccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCch----hhccCCC-CCEEECCCCCC
Confidence            77766666777777777777777777765555677777777777777777653 344    4445555 77777777777


Q ss_pred             ccccchhcCCCCCCC----EEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCCCCc
Q 036216          166 SGHLTDQLGQFKNLD----SLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQL  241 (695)
Q Consensus       166 ~~~~~~~l~~l~~L~----~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L  241 (695)
                      ++..+..+..+++|+    +|++++|.++              .++...+.. .+|+.|++++|.++...+..+..+++|
T Consensus       162 ~~~~~~~~~~l~~L~~l~l~L~ls~n~l~--------------~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L  226 (276)
T 2z62_A          162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMN--------------FIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSL  226 (276)
T ss_dssp             CEECGGGGHHHHTCTTCCEEEECCSSCCC--------------EECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSC
T ss_pred             CcCCHHHhhhhhhccccceeeecCCCccc--------------ccCccccCC-CcccEEECCCCceeecCHhHhcccccc
Confidence            776666666655555    7777777775              444433333 367888888888776666667777888


Q ss_pred             cEEEccCCCCCCC
Q 036216          242 IELGLRSCDVGSR  254 (695)
Q Consensus       242 ~~L~l~~~~~~~~  254 (695)
                      +.|++++|++...
T Consensus       227 ~~L~l~~N~~~c~  239 (276)
T 2z62_A          227 QKIWLHTNPWDCS  239 (276)
T ss_dssp             CEEECCSSCBCCC
T ss_pred             cEEEccCCccccc
Confidence            8888888776643

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=8.9e-23  Score=201.17  Aligned_cols=202  Identities=24%  Similarity=0.292  Sum_probs=141.4

Q ss_pred             CCcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeC
Q 036216            4 SLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGL   83 (695)
Q Consensus         4 ~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L   83 (695)
                      ..++++++++.++.+|.. +  .+++++|++++|.++.. .+..+.++++|++|++++|.++...+..|..+++|++|++
T Consensus        17 ~~~~l~~~~~~l~~ip~~-~--~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSN-I--PADTKKLDLQSNKLSSL-PSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTTEEECTTSCCSSCCSC-C--CTTCSEEECCSSCCSCC-CTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred             CCCEEEccCCCCCccCCC-C--CCCCCEEECcCCCCCee-CHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence            467788888888888763 2  25788888888888774 4556778888888888888888666666788888888888


Q ss_pred             CCCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCc
Q 036216           84 PFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASS  163 (695)
Q Consensus        84 ~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n  163 (695)
                      ++|.+++..+..|..+++|++|++++|.+++..+..|+.+++|++|++++|.+.+..+.    .+..+.. |++|++++|
T Consensus        93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~-L~~L~L~~n  167 (270)
T 2o6q_A           93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG----VFDKLTS-LKELRLYNN  167 (270)
T ss_dssp             CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTT-CCEEECCSS
T ss_pred             CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHh----HccCCcc-cceeEecCC
Confidence            88888877667778888888888888888877777788888888888888877654443    2333433 666666666


Q ss_pred             ccccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccce
Q 036216          164 SISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLT  228 (695)
Q Consensus       164 ~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~  228 (695)
                      .+++..+..|..+++|++|++++|+++              .++...|..+++|+.|++++|.+.
T Consensus       168 ~l~~~~~~~~~~l~~L~~L~L~~N~l~--------------~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          168 QLKRVPEGAFDKLTELKTLKLDNNQLK--------------RVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCCS--------------CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             cCcEeChhHhccCCCcCEEECCCCcCC--------------cCCHHHhccccCCCEEEecCCCee
Confidence            666555555555666666666666554              344434555555555555555543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.90  E-value=6.1e-23  Score=203.94  Aligned_cols=204  Identities=20%  Similarity=0.202  Sum_probs=145.3

Q ss_pred             ccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCC
Q 036216          380 WMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRM  459 (695)
Q Consensus       380 ~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L  459 (695)
                      +..++++++++++++.++ .+|..+.  +.++.|++++|.+.+..+..|..+++|++|++++|.+.+ ++..  ..+++|
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~--~~l~~L   79 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD--GTLPVL   79 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC--SCCTTC
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC--CCCCcC
Confidence            445566666666666666 3444332  566666666666666666666666677777777766643 2222  256777


Q ss_pred             cEEEcCCCcccccCCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEE
Q 036216          460 VLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELV  539 (695)
Q Consensus       460 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  539 (695)
                      ++|++++|++. .+|..+..+++|++|++++|++++..|..|..+++|                                
T Consensus        80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L--------------------------------  126 (290)
T 1p9a_G           80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL--------------------------------  126 (290)
T ss_dssp             CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC--------------------------------
T ss_pred             CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCC--------------------------------
Confidence            77777777776 556667777888888888888875555666666555                                


Q ss_pred             EecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCc
Q 036216          540 VTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQ  619 (695)
Q Consensus       540 ~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~  619 (695)
                                      ++|++++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|+|++|+++ .+|.
T Consensus       127 ----------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~  189 (290)
T 1p9a_G          127 ----------------QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPK  189 (290)
T ss_dssp             ----------------CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCT
T ss_pred             ----------------CEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccCh
Confidence                            67778888888666667788888888888888888665666788888888888888888 6788


Q ss_pred             CCcCCCCCCEEEcccCcCcc
Q 036216          620 SMSSLTFLNHLNLSNNYLTG  639 (695)
Q Consensus       620 ~l~~l~~L~~L~ls~N~l~~  639 (695)
                      .+..+++|+.+++++|++..
T Consensus       190 ~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          190 GFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             TTTTTCCCSEEECCSCCBCC
T ss_pred             hhcccccCCeEEeCCCCccC
Confidence            88888888888888888764

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=3.5e-23  Score=204.18  Aligned_cols=209  Identities=21%  Similarity=0.206  Sum_probs=102.2

Q ss_pred             CCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCCCCCCCchhhhcCCCCCC
Q 036216           24 ANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLE  103 (695)
Q Consensus        24 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~  103 (695)
                      ..+++|+.|++++|.+..  ++ .+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++..+..|+.+++|+
T Consensus        38 ~~l~~L~~L~l~~~~i~~--~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  112 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIKS--VQ-GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK  112 (272)
T ss_dssp             HHHTTCCEEECTTSCCCC--CT-TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             ccccceeeeeeCCCCccc--cc-ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence            334444455554444443  22 234444455555554444421  2444444555555555544444444444444555


Q ss_pred             EEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCcccccccchhcCCCCCCCEEE
Q 036216          104 HLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLD  183 (695)
Q Consensus       104 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~  183 (695)
                      +|++++|.+++..+..++.+++|++|++++|.+.+..+.    .++.+.. |+.|++++|.+++..+..++.+++|++|+
T Consensus       113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  187 (272)
T 3rfs_A          113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKG----VFDKLTN-LTELDLSYNQLQSLPEGVFDKLTQLKDLR  187 (272)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTT-CCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHH----HhccCcc-CCEEECCCCCcCccCHHHhcCCccCCEEE
Confidence            555555544444444444444555555555444433332    2223333 55555555555544444455566666666


Q ss_pred             ccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCCCCccEEEccCCCCCCCCCccccCCC
Q 036216          184 LSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQK  263 (695)
Q Consensus       184 L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~  263 (695)
                      +++|+++              .+++..+..+++|+.|++++|.+.+       .++.++.+++..|.+.+.+|.+++.+.
T Consensus       188 L~~N~l~--------------~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~~  246 (272)
T 3rfs_A          188 LYQNQLK--------------SVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVA  246 (272)
T ss_dssp             CCSSCCS--------------CCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred             CCCCcCC--------------ccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCcccccC
Confidence            6666554              3333345556666666666665442       233555666666666666666655443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.90  E-value=3.8e-25  Score=230.61  Aligned_cols=252  Identities=14%  Similarity=0.216  Sum_probs=185.1

Q ss_pred             cCCCccchhhhhhhhhccccceeecccccccCCCC----ccccCCCCCCEEeCCCCc---ccccCCccc-------cCCC
Q 036216          343 SLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLP----DCWMSYQNLMALDLSNNK---FTGNLPTSL-------GSLS  408 (695)
Q Consensus       343 ~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~ls~n~---~~~~~~~~~-------~~l~  408 (695)
                      .++......+...+..+++|+.|++++|.+.+..+    ..+..+++|++|++++|.   +.+.+|..+       ..++
T Consensus        15 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~   94 (386)
T 2ca6_A           15 AITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCP   94 (386)
T ss_dssp             SCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCT
T ss_pred             CCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCC
Confidence            33333334445555667778888888887765433    336677888888888753   334444443       6788


Q ss_pred             CCcEEECcCCccee----eCCccccCCCCCcEEEcCCCcccccCChhhhh---cC---------CCCcEEEcCCCccc-c
Q 036216          409 SLVSLHLRKNRLSG----TIPILLKNCTSLVTLDVGENEVFGNIPSWFGE---RF---------SRMVLLILRSNNFD-G  471 (695)
Q Consensus       409 ~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~---~l---------~~L~~L~l~~n~~~-~  471 (695)
                      +|++|++++|.+..    .++..+..+++|++|++++|.+....+..+..   .+         ++|++|++++|+++ +
T Consensus        95 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~  174 (386)
T 2ca6_A           95 KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG  174 (386)
T ss_dssp             TCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG
T ss_pred             cccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcH
Confidence            88888888888875    35667788888999999988885444433332   22         88999999999887 3


Q ss_pred             cCC---ccccCCCCCCEEeCCCCcCcc-----cCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecC
Q 036216          472 PLP---TELCDLAFLQILDLADNNLSG-----TIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKG  543 (695)
Q Consensus       472 ~~~---~~l~~l~~L~~L~L~~n~l~~-----~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  543 (695)
                      .++   ..+..+++|++|++++|+++.     ..|..+..++                                      
T Consensus       175 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~--------------------------------------  216 (386)
T 2ca6_A          175 SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQ--------------------------------------  216 (386)
T ss_dssp             GHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCT--------------------------------------
T ss_pred             HHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCC--------------------------------------
Confidence            344   456778899999999998872     1222333333                                      


Q ss_pred             CcchhhhhcccccEEEcCCcccc----ccCCccccCCCCCCEEeccCCccccc----CCcccc--CcCCCCEEECCCCcc
Q 036216          544 VAADYNEILNLVRIIDFSKNLFS----GTLPMGLTNLKAVQSLNLSYNIFTGR----IPETIG--TMRSLESIDFSVNKF  613 (695)
Q Consensus       544 ~~~~~~~~~~~l~~L~Ls~n~l~----~~~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~~~--~l~~L~~L~Ls~n~l  613 (695)
                                .|+.|+|++|.++    +.+|..+..+++|++|+|++|.+++.    +|..+.  .+++|+.|+|++|.+
T Consensus       217 ----------~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i  286 (386)
T 2ca6_A          217 ----------ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI  286 (386)
T ss_dssp             ----------TCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCC
T ss_pred             ----------CccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcC
Confidence                      3488999999996    57788899999999999999999866    566663  489999999999999


Q ss_pred             cc----cCCcCC-cCCCCCCEEEcccCcCcccCC
Q 036216          614 TG----EIPQSM-SSLTFLNHLNLSNNYLTGKIP  642 (695)
Q Consensus       614 ~~----~~p~~l-~~l~~L~~L~ls~N~l~~~iP  642 (695)
                      ++    .+|..+ .++++|++|++++|++++..|
T Consensus       287 ~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          287 ELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             BHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             CHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            97    488877 668999999999999998765

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=3.1e-22  Score=198.83  Aligned_cols=202  Identities=20%  Similarity=0.150  Sum_probs=170.9

Q ss_pred             hccccceeecccccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEE
Q 036216          358 ETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTL  437 (695)
Q Consensus       358 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  437 (695)
                      .++++++++++++.++ .+|..+.  ++++.|++++|.+++..+..|..+++|++|++++|.+++..+.  ..+++|++|
T Consensus         8 ~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L   82 (290)
T 1p9a_G            8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTL   82 (290)
T ss_dssp             CSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEE
T ss_pred             ccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEE
Confidence            4677888888888887 4555443  6889999999999888788899999999999999999865443  688999999


Q ss_pred             EcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCc
Q 036216          438 DVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNA  517 (695)
Q Consensus       438 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~  517 (695)
                      ++++|.+ ..+|..+. .+++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|          
T Consensus        83 ~Ls~N~l-~~l~~~~~-~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L----------  150 (290)
T 1p9a_G           83 DLSHNQL-QSLPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL----------  150 (290)
T ss_dssp             ECCSSCC-SSCCCCTT-TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC----------
T ss_pred             ECCCCcC-CcCchhhc-cCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCC----------
Confidence            9999998 57777664 78999999999999998777889999999999999999996666666666655          


Q ss_pred             ccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccc
Q 036216          518 IEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETI  597 (695)
Q Consensus       518 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~  597 (695)
                                                            +.|++++|++++..+..|..+++|++|+|++|+++ .+|..+
T Consensus       151 --------------------------------------~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~  191 (290)
T 1p9a_G          151 --------------------------------------EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGF  191 (290)
T ss_dssp             --------------------------------------CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTT
T ss_pred             --------------------------------------CEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhh
Confidence                                                  88999999999766667889999999999999999 788888


Q ss_pred             cCcCCCCEEECCCCcccc
Q 036216          598 GTMRSLESIDFSVNKFTG  615 (695)
Q Consensus       598 ~~l~~L~~L~Ls~n~l~~  615 (695)
                      ..+.+|+.|+|++|.+..
T Consensus       192 ~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          192 FGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             TTTCCCSEEECCSCCBCC
T ss_pred             cccccCCeEEeCCCCccC
Confidence            889999999999998863

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.89  E-value=1.5e-22  Score=197.12  Aligned_cols=212  Identities=18%  Similarity=0.218  Sum_probs=139.1

Q ss_pred             CCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEc
Q 036216          385 NLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLIL  464 (695)
Q Consensus       385 ~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l  464 (695)
                      +.++++++++.++ .+|..+.  +.++.|++++|++.+..+..|.++++|++|++++|.+                    
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l--------------------   71 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL--------------------   71 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC--------------------
T ss_pred             CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcC--------------------
Confidence            4556666666666 4444433  4566666666666655555555555555555555554                    


Q ss_pred             CCCcccccCCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCC
Q 036216          465 RSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGV  544 (695)
Q Consensus       465 ~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  544 (695)
                           .+..+..|..+++|++|++++|++++..+..|..+++|                                     
T Consensus        72 -----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-------------------------------------  109 (251)
T 3m19_A           72 -----QTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQL-------------------------------------  109 (251)
T ss_dssp             -----CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-------------------------------------
T ss_pred             -----CccCHhHhccCCcCCEEECCCCcccccChhHhcccCCC-------------------------------------
Confidence                 44444455666666666666666664444445444444                                     


Q ss_pred             cchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCcCC
Q 036216          545 AADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSL  624 (695)
Q Consensus       545 ~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l  624 (695)
                                 ++|++++|++++..+..|..+++|++|+|++|++++..+..|+.+++|+.|+|++|++++..|..+..+
T Consensus       110 -----------~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  178 (251)
T 3m19_A          110 -----------DKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRL  178 (251)
T ss_dssp             -----------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred             -----------CEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCC
Confidence                       666677777775666667888999999999999997777789999999999999999998777889999


Q ss_pred             CCCCEEEcccCcCcccCCCCcccCcc------ccccccCCcccCCCCCCCCCCC
Q 036216          625 TFLNHLNLSNNYLTGKIPSSTQLQSF------NASCFLGNNLCGAPLPKNCTDE  672 (695)
Q Consensus       625 ~~L~~L~ls~N~l~~~iP~~~~~~~~------~~~~~~~n~l~~~~~~~~c~~~  672 (695)
                      ++|++|++++|++.+..+....+..+      ......|+.+++.|....|.+.
T Consensus       179 ~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~  232 (251)
T 3m19_A          179 GKLQTITLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQNLHESPDGVTCSDG  232 (251)
T ss_dssp             TTCCEEECCSCCBCTTSTTHHHHHHHHHHSGGGBCC-------CCGGGCBBTTS
T ss_pred             CCCCEEEeeCCceeCCccccHHHHHHHHhcccceeeccCcccccCCCcCccCCC
Confidence            99999999999998875543222221      1223345567777777778765

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.88  E-value=5.3e-24  Score=219.53  Aligned_cols=235  Identities=20%  Similarity=0.197  Sum_probs=117.7

Q ss_pred             cceeecccccccCCCC----ccccCCC-CCCEEeCCCCcccccCCccccCC-----CCCcEEECcCCcceeeCCcc----
Q 036216          362 LKFLFLDRNILQGKLP----DCWMSYQ-NLMALDLSNNKFTGNLPTSLGSL-----SSLVSLHLRKNRLSGTIPIL----  427 (695)
Q Consensus       362 L~~L~l~~n~l~~~~~----~~~~~~~-~L~~L~ls~n~~~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~----  427 (695)
                      |++|++++|.+++..+    .++..++ +|++|++++|.+++..+..+..+     ++|++|++++|.+++..+..    
T Consensus        24 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~  103 (362)
T 3goz_A           24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKT  103 (362)
T ss_dssp             CCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred             ceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHH
Confidence            5555555555443333    3444444 55555555555554444333332     55555555555554333332    


Q ss_pred             ccCC-CCCcEEEcCCCcccccCChhhhhc----CCCCcEEEcCCCcccccC----CccccCCC-CCCEEeCCCCcCcccC
Q 036216          428 LKNC-TSLVTLDVGENEVFGNIPSWFGER----FSRMVLLILRSNNFDGPL----PTELCDLA-FLQILDLADNNLSGTI  497 (695)
Q Consensus       428 ~~~l-~~L~~L~l~~n~~~~~~~~~~~~~----l~~L~~L~l~~n~~~~~~----~~~l~~l~-~L~~L~L~~n~l~~~~  497 (695)
                      +..+ ++|++|++++|.+.+..+..+...    .++|++|++++|.+.+..    +..+..++ +|++|++++|++++..
T Consensus       104 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~  183 (362)
T 3goz_A          104 LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKN  183 (362)
T ss_dssp             HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC
T ss_pred             HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhh
Confidence            2222 555555555555543333332211    235566666666555322    22233333 6666666666665444


Q ss_pred             ChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhc-ccccEEEcCCcccccc----CCcc
Q 036216          498 PNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEIL-NLVRIIDFSKNLFSGT----LPMG  572 (695)
Q Consensus       498 p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~L~Ls~n~l~~~----~p~~  572 (695)
                      +..+...-                                            ... ..|+.|||++|.+++.    ++..
T Consensus       184 ~~~l~~~l--------------------------------------------~~~~~~L~~L~Ls~N~i~~~~~~~l~~~  219 (362)
T 3goz_A          184 CAELAKFL--------------------------------------------ASIPASVTSLDLSANLLGLKSYAELAYI  219 (362)
T ss_dssp             HHHHHHHH--------------------------------------------HTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             HHHHHHHH--------------------------------------------HhCCCCCCEEECCCCCCChhHHHHHHHH
Confidence            43332210                                            001 1235666666666542    3334


Q ss_pred             ccC-CCCCCEEeccCCcccccCC----ccccCcCCCCEEECCCCcccc-------cCCcCCcCCCCCCEEEcccCcCccc
Q 036216          573 LTN-LKAVQSLNLSYNIFTGRIP----ETIGTMRSLESIDFSVNKFTG-------EIPQSMSSLTFLNHLNLSNNYLTGK  640 (695)
Q Consensus       573 l~~-l~~L~~L~Ls~n~l~~~~p----~~~~~l~~L~~L~Ls~n~l~~-------~~p~~l~~l~~L~~L~ls~N~l~~~  640 (695)
                      +.. .++|++|+|++|.+++..+    ..+..+++|+.|++++|.+.+       .++..+..+++|+.||+++|++.+.
T Consensus       220 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          220 FSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             HHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             HhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            443 2467777777776664433    223455667777777776332       2334566667777777777776654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.88  E-value=7.2e-23  Score=206.30  Aligned_cols=230  Identities=19%  Similarity=0.197  Sum_probs=149.9

Q ss_pred             CcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccc--cCCCCCCEEeCCCCcccccCC----ccccCC
Q 036216          334 LTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCW--MSYQNLMALDLSNNKFTGNLP----TSLGSL  407 (695)
Q Consensus       334 L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~--~~~~~L~~L~ls~n~~~~~~~----~~~~~l  407 (695)
                      ++.+.+.++.++......... +..+++|++|++++|.+.+..|..+  ..+++|++|++++|.+.+..+    ..+..+
T Consensus        66 l~~l~l~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           66 VRRLTVGAAQVPAQLLVGALR-VLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCEEEECSCCCBHHHHHHHHH-HHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             eeEEEEeCCcCCHHHHHHHHH-hcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            455666665554321111111 1234567888888888777777666  677778888888887775443    233456


Q ss_pred             CCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEe
Q 036216          408 SSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILD  487 (695)
Q Consensus       408 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~  487 (695)
                      ++|++|++++|++.+..+..+..+++|++|++++|++.+....                     ..+..+..+++|++|+
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---------------------~~~~~~~~l~~L~~L~  203 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGL---------------------MAALCPHKFPAIQNLA  203 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHH---------------------HTTSCTTSSCCCCSCB
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhh---------------------hHHHhhhcCCCCCEEE
Confidence            7777777777777666666676777777777777765321000                     0112234566777777


Q ss_pred             CCCCcCcccCChh----hhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCc
Q 036216          488 LADNNLSGTIPNC----IHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKN  563 (695)
Q Consensus       488 L~~n~l~~~~p~~----~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n  563 (695)
                      +++|+++ .++..    +..+++                                                |++||+++|
T Consensus       204 Ls~N~l~-~l~~~~~~l~~~l~~------------------------------------------------L~~L~Ls~N  234 (310)
T 4glp_A          204 LRNTGME-TPTGVCAALAAAGVQ------------------------------------------------PHSLDLSHN  234 (310)
T ss_dssp             CCSSCCC-CHHHHHHHHHHHTCC------------------------------------------------CSSEECTTS
T ss_pred             CCCCCCC-chHHHHHHHHhcCCC------------------------------------------------CCEEECCCC
Confidence            7777765 22221    223333                                                367778888


Q ss_pred             cccccCCccccCC---CCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEEcccCcCcc
Q 036216          564 LFSGTLPMGLTNL---KAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTG  639 (695)
Q Consensus       564 ~l~~~~p~~l~~l---~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~  639 (695)
                      ++++..|..+..+   ++|++|+|++|+++ .+|..+.  ++|+.|+|++|++++. |. +..+++|++|++++|+++.
T Consensus       235 ~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          235 SLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             CCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence            8877767777666   68999999999988 6777664  7899999999999853 44 6778899999999998864

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.88  E-value=3.3e-23  Score=211.91  Aligned_cols=251  Identities=19%  Similarity=0.222  Sum_probs=195.5

Q ss_pred             CCcEEEccCCcCCCccchhhhhhhhhc--cccceeecccccccCCCCccccCCCCCCEEeCCCCccccc-CCccccCCCC
Q 036216          333 NLTVLELSGNSLSGPIFHFLCYTINET--MKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGN-LPTSLGSLSS  409 (695)
Q Consensus       333 ~L~~L~l~~n~l~~~~~~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~-~~~~~~~l~~  409 (695)
                      .++.++++++.+.+   ..    +..+  +.++.+++++|.+.+..+. +..+++|++|++++|.+.+. ++..+..+++
T Consensus        48 ~~~~l~l~~~~~~~---~~----~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~  119 (336)
T 2ast_B           48 LWQTLDLTGKNLHP---DV----TGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSK  119 (336)
T ss_dssp             TSSEEECTTCBCCH---HH----HHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCC
T ss_pred             hheeeccccccCCH---HH----HHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCC
Confidence            46778888777652   22    2234  7899999999999877665 55789999999999998765 7778889999


Q ss_pred             CcEEECcCCcceeeCCccccCCCCCcEEEcCCC-ccccc-CChhhhhcCCCCcEEEcCCC-ccccc-CCccccCCC-CCC
Q 036216          410 LVSLHLRKNRLSGTIPILLKNCTSLVTLDVGEN-EVFGN-IPSWFGERFSRMVLLILRSN-NFDGP-LPTELCDLA-FLQ  484 (695)
Q Consensus       410 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~~~~~-~~~~~~~~l~~L~~L~l~~n-~~~~~-~~~~l~~l~-~L~  484 (695)
                      |++|++++|.+.+..+..+..+++|++|++++| .+.+. ++..+. .+++|++|++++| .+++. ++..+..++ +|+
T Consensus       120 L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~  198 (336)
T 2ast_B          120 LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS-SCSRLDELNLSWCFDFTEKHVQVAVAHVSETIT  198 (336)
T ss_dssp             CSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHH-HCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCC
T ss_pred             CCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHh-cCCCCCEEcCCCCCCcChHHHHHHHHhcccCCC
Confidence            999999999988777888889999999999999 56543 444444 7999999999999 88764 566788899 999


Q ss_pred             EEeCCCC--cCc-ccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcC
Q 036216          485 ILDLADN--NLS-GTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFS  561 (695)
Q Consensus       485 ~L~L~~n--~l~-~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls  561 (695)
                      +|++++|  .++ +.+|..+..+++|                                                +.|+++
T Consensus       199 ~L~l~~~~~~~~~~~l~~~~~~~~~L------------------------------------------------~~L~l~  230 (336)
T 2ast_B          199 QLNLSGYRKNLQKSDLSTLVRRCPNL------------------------------------------------VHLDLS  230 (336)
T ss_dssp             EEECCSCGGGSCHHHHHHHHHHCTTC------------------------------------------------SEEECT
T ss_pred             EEEeCCCcccCCHHHHHHHHhhCCCC------------------------------------------------CEEeCC
Confidence            9999999  454 3445555555544                                                889999


Q ss_pred             Ccc-ccccCCccccCCCCCCEEeccCCc-ccccCCccccCcCCCCEEECCCCcccccCCcCCcCC-CCCCEEEcccCcCc
Q 036216          562 KNL-FSGTLPMGLTNLKAVQSLNLSYNI-FTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSL-TFLNHLNLSNNYLT  638 (695)
Q Consensus       562 ~n~-l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~ls~N~l~  638 (695)
                      +|. +++..+..+..+++|++|++++|. +.......++++++|+.|++++| +.   .+.+..+ ..+..|++++|+++
T Consensus       231 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~---~~~~~~l~~~l~~L~l~~n~l~  306 (336)
T 2ast_B          231 DSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP---DGTLQLLKEALPHLQINCSHFT  306 (336)
T ss_dssp             TCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC---TTCHHHHHHHSTTSEESCCCSC
T ss_pred             CCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC---HHHHHHHHhhCcceEEecccCc
Confidence            999 777788889999999999999995 33222236788999999999999 33   2244444 34778889999999


Q ss_pred             ccCCCC
Q 036216          639 GKIPSS  644 (695)
Q Consensus       639 ~~iP~~  644 (695)
                      +..|..
T Consensus       307 ~~~~~~  312 (336)
T 2ast_B          307 TIARPT  312 (336)
T ss_dssp             CTTCSS
T ss_pred             cccCCc
Confidence            998875

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.88  E-value=3.4e-23  Score=213.55  Aligned_cols=213  Identities=18%  Similarity=0.153  Sum_probs=140.0

Q ss_pred             EEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCc----hhhcCCC-CCCEEEcCCCcCcccCCccCCCC-----C
Q 036216            7 ELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVP----AWVFGLS-RLHFLNLGYNNFQGPIPEGLQNL-----T   76 (695)
Q Consensus         7 ~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~----~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l-----~   76 (695)
                      .++++.|.+++..+..+...++|++|+|++|.+++. .+    +.+..++ +|++|+|++|.++...+..+..+     +
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~   80 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSI-STVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA   80 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGS-CHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChH-HHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence            467777887776665555556688888888888764 33    5566777 78888888888876666666554     7


Q ss_pred             CCCEEeCCCCCCCCCchhhh----cCC-CCCCEEEcccCcCCcccchhhc----C-CCCCCEEEccCCcCccccchhhhh
Q 036216           77 SLKHLGLPFNHFSSSVPKWF----DRL-THLEHLSLSYNSLEGRIPRSMA----R-LCNLRRLYLGGAKLNQEISEILEI  146 (695)
Q Consensus        77 ~L~~L~L~~n~l~~~~p~~~----~~l-~~L~~L~Ls~n~l~~~~~~~~~----~-l~~L~~L~L~~n~l~~~~~~~~~~  146 (695)
                      +|++|++++|.+++..+..+    ..+ ++|++|++++|.+++..+..+.    . .++|++|++++|.+.+.....+..
T Consensus        81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  160 (362)
T 3goz_A           81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ  160 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred             CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence            88888888888876666543    334 7888888888888765554433    3 357888888888887665555544


Q ss_pred             hhcccccccceEEccCcccccccchhc----CCC-CCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEE
Q 036216          147 FSGCVSNGLESLALASSSISGHLTDQL----GQF-KNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFL  221 (695)
Q Consensus       147 ~~~~~~~~L~~L~L~~n~~~~~~~~~l----~~l-~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~  221 (695)
                      .+.....+|++|++++|.+++..+..+    ..+ ++|++|++++|.+.+..         ...++.......++|+.|+
T Consensus       161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~---------~~~l~~~l~~~~~~L~~L~  231 (362)
T 3goz_A          161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKS---------YAELAYIFSSIPNHVVSLN  231 (362)
T ss_dssp             HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC---------HHHHHHHHHHSCTTCCEEE
T ss_pred             HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhH---------HHHHHHHHhcCCCCceEEE
Confidence            555555348888888887776665433    334 47888888877775210         0013332222245677777


Q ss_pred             ccccccee
Q 036216          222 VGANKLTL  229 (695)
Q Consensus       222 l~~n~l~~  229 (695)
                      +++|.+..
T Consensus       232 Ls~N~l~~  239 (362)
T 3goz_A          232 LCLNCLHG  239 (362)
T ss_dssp             CCSSCCCC
T ss_pred             CcCCCCCc
Confidence            77776654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.88  E-value=3.7e-22  Score=192.97  Aligned_cols=196  Identities=15%  Similarity=0.201  Sum_probs=119.9

Q ss_pred             CCCEEeCCCCcccccCCccccCCCCCcEEECcCCc-ceeeCCccccCCCCCcEEEcCC-CcccccCChhhhhcCCCCcEE
Q 036216          385 NLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNR-LSGTIPILLKNCTSLVTLDVGE-NEVFGNIPSWFGERFSRMVLL  462 (695)
Q Consensus       385 ~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~~l~~L~~L  462 (695)
                      ++++|++++|.+++..+..|..+++|++|++++|+ ++...+..|.++++|++|++++ |.+. .++...+..+++|++|
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKFL  110 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCCEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCCEE
Confidence            66777777777766555566667777777777775 6655555666677777777766 6663 3333222356666666


Q ss_pred             EcCCCcccccCCccccCCCCCC---EEeCCCC-cCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceE
Q 036216          463 ILRSNNFDGPLPTELCDLAFLQ---ILDLADN-NLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQEL  538 (695)
Q Consensus       463 ~l~~n~~~~~~~~~l~~l~~L~---~L~L~~n-~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~  538 (695)
                      ++++|++++ +|. +..+++|+   +|++++| ++++..+..|.++++|                               
T Consensus       111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L-------------------------------  157 (239)
T 2xwt_C          111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE-------------------------------  157 (239)
T ss_dssp             EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSS-------------------------------
T ss_pred             eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcc-------------------------------
Confidence            666666664 444 66666666   6777776 6664444445554444                               


Q ss_pred             EEecCCcchhhhhccccc-EEEcCCccccccCCccccCCCCCCEEeccCCc-ccccCCccccCc-CCCCEEECCCCcccc
Q 036216          539 VVTKGVAADYNEILNLVR-IIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNI-FTGRIPETIGTM-RSLESIDFSVNKFTG  615 (695)
Q Consensus       539 ~~~~~~~~~~~~~~~~l~-~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~l-~~L~~L~Ls~n~l~~  615 (695)
                                       + .|++++|+++...+..+.. ++|++|++++|+ +++..+..|+.+ ++|+.|++++|+++ 
T Consensus       158 -----------------~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-  218 (239)
T 2xwt_C          158 -----------------TLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-  218 (239)
T ss_dssp             -----------------EEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-
T ss_pred             -----------------eeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-
Confidence                             5 6666666666333333333 667777777774 665555666666 77777777777776 


Q ss_pred             cCCcCCcCCCCCCEEEcccC
Q 036216          616 EIPQSMSSLTFLNHLNLSNN  635 (695)
Q Consensus       616 ~~p~~l~~l~~L~~L~ls~N  635 (695)
                      .+|..  .+++|++|+++++
T Consensus       219 ~l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          219 ALPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             CCCCT--TCTTCSEEECTTC
T ss_pred             cCChh--HhccCceeeccCc
Confidence            34433  4566677776665

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.87  E-value=4.6e-23  Score=214.89  Aligned_cols=251  Identities=18%  Similarity=0.179  Sum_probs=128.1

Q ss_pred             CchhhcCCCCCCEEEcCCCcCccc----CCccCCCCCCCCEEeCCCCCC---CCCchhhh-------cCCCCCCEEEccc
Q 036216           44 VPAWVFGLSRLHFLNLGYNNFQGP----IPEGLQNLTSLKHLGLPFNHF---SSSVPKWF-------DRLTHLEHLSLSY  109 (695)
Q Consensus        44 ~~~~~~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~L~~n~l---~~~~p~~~-------~~l~~L~~L~Ls~  109 (695)
                      ++..+..+++|++|+|++|.+...    ++..+..+++|++|++++|.+   .+.+|..+       ..+++|++|++++
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~  103 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  103 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence            344444555555555555555543    222345555566665555422   22333333       4556666666666


Q ss_pred             CcCCc----ccchhhcCCCCCCEEEccCCcCccccchhhhhhhccc---------ccccceEEccCcccc-cccc---hh
Q 036216          110 NSLEG----RIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCV---------SNGLESLALASSSIS-GHLT---DQ  172 (695)
Q Consensus       110 n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~---------~~~L~~L~L~~n~~~-~~~~---~~  172 (695)
                      |.+..    .+|..+..+++|++|++++|.+....+..+...+...         +. |++|++++|.+. ..++   ..
T Consensus       104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~-L~~L~L~~n~l~~~~~~~l~~~  182 (386)
T 2ca6_A          104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPP-LRSIICGRNRLENGSMKEWAKT  182 (386)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCC-CCEEECCSSCCTGGGHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCC-CcEEECCCCCCCcHHHHHHHHH
Confidence            66554    2445555566666666666655443333222222222         22 555555555554 2222   24


Q ss_pred             cCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccce----eecCCCCCCCCCccEEEccC
Q 036216          173 LGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLT----LKVKRDWIPPFQLIELGLRS  248 (695)
Q Consensus       173 l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~----~~~~~~~~~~~~L~~L~l~~  248 (695)
                      +..+++|++|++++|++....        . ..+.+..+..+++|+.|++++|.++    ...+..+..+++|++|++++
T Consensus       183 l~~~~~L~~L~L~~n~l~~~g--------~-~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~  253 (386)
T 2ca6_A          183 FQSHRLLHTVKMVQNGIRPEG--------I-EHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND  253 (386)
T ss_dssp             HHHCTTCCEEECCSSCCCHHH--------H-HHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTT
T ss_pred             HHhCCCcCEEECcCCCCCHhH--------H-HHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCC
Confidence            455566666666666553100        0 0011113455566666666666553    22333444455555555555


Q ss_pred             CCCCCC----CCcccc--CCCCCCEEEcccCCCcc----ccChHHhhcccccceeecccccccccc
Q 036216          249 CDVGSR----FPLWLY--SQKDLQFLDLFNSGISG----TFPNRLLKSASQLYLLDLGHNQIHGEL  304 (695)
Q Consensus       249 ~~~~~~----~~~~l~--~~~~L~~L~l~~~~i~~----~~~~~~~~~l~~L~~L~l~~n~l~~~~  304 (695)
                      |.+.+.    ++..+.  .+++|++|++++|.+.+    .+|..++..+++|+.|++++|.+++..
T Consensus       254 n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          254 CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             CCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             CCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            555443    334442  26677777777777765    356555555667777777777666443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=8.2e-21  Score=184.87  Aligned_cols=178  Identities=26%  Similarity=0.343  Sum_probs=142.0

Q ss_pred             CCcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeC
Q 036216            4 SLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGL   83 (695)
Q Consensus         4 ~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L   83 (695)
                      ..++++++++.++.+|.. +.  +++++|++++|.+++. .+..+.++++|++|+|++|.+++..+..|..+++|++|++
T Consensus        15 ~~~~l~~~~~~l~~~p~~-~~--~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSG-IP--ADTEKLDLQSTGLATL-SDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGTEEECTTCCCSSCCSC-CC--TTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCeEEecCCCCccccCCC-CC--CCCCEEEccCCCcCcc-CHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            467899999999998873 32  6899999999999886 6667889999999999999999888888999999999999


Q ss_pred             CCCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCc
Q 036216           84 PFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASS  163 (695)
Q Consensus        84 ~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n  163 (695)
                      ++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|++.+..+.    .++.+.. |++|++++|
T Consensus        91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~-L~~L~L~~N  165 (251)
T 3m19_A           91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAG----AFDKLTN-LQTLSLSTN  165 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTT-CCEEECCSS
T ss_pred             CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHH----HcCcCcC-CCEEECCCC
Confidence            99999987778889999999999999999977677788899999999999888765554    3344444 666666666


Q ss_pred             ccccccchhcCCCCCCCEEEccCCCcC
Q 036216          164 SISGHLTDQLGQFKNLDSLDLSNNSIV  190 (695)
Q Consensus       164 ~~~~~~~~~l~~l~~L~~L~L~~n~i~  190 (695)
                      .+.+..+..+..+++|++|++++|++.
T Consensus       166 ~l~~~~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          166 QLQSVPHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             cCCccCHHHHhCCCCCCEEEeeCCcee
Confidence            666666656666666666666666654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=1.2e-21  Score=196.65  Aligned_cols=209  Identities=19%  Similarity=0.297  Sum_probs=145.7

Q ss_pred             eeecccccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCc
Q 036216          364 FLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENE  443 (695)
Q Consensus       364 ~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  443 (695)
                      .+.+..+.+.+..  .+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+.+..+  +..+++|++|++++|.
T Consensus        23 ~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~   96 (308)
T 1h6u_A           23 KIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNP   96 (308)
T ss_dssp             HHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCC
T ss_pred             HHHhCCCCcCcee--cHHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCc
Confidence            3444444444332  23456677777777777763 34 46677777777777777764433  7777777777777777


Q ss_pred             ccccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCC
Q 036216          444 VFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFP  523 (695)
Q Consensus       444 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~  523 (695)
                      +.+ ++ .+. .+++|+.|++++|++++. + .+..+++|++|++++|++++..+  +..+++|                
T Consensus        97 l~~-~~-~~~-~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L----------------  153 (308)
T 1h6u_A           97 LKN-VS-AIA-GLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNL----------------  153 (308)
T ss_dssp             CSC-CG-GGT-TCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTC----------------
T ss_pred             CCC-ch-hhc-CCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCc----------------
Confidence            633 44 232 577888888888887753 3 37788888888888888774322  4444333                


Q ss_pred             CCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCC
Q 036216          524 LNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSL  603 (695)
Q Consensus       524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  603 (695)
                                                      +.|++++|++++..+  +..+++|++|++++|++++. +. +..+++|
T Consensus       154 --------------------------------~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L  197 (308)
T 1h6u_A          154 --------------------------------QYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDI-SP-LASLPNL  197 (308)
T ss_dssp             --------------------------------CEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GG-GGGCTTC
T ss_pred             --------------------------------cEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcC-hh-hcCCCCC
Confidence                                            778888888875333  78888888888988888844 33 7888889


Q ss_pred             CEEECCCCcccccCCcCCcCCCCCCEEEcccCcCcc
Q 036216          604 ESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTG  639 (695)
Q Consensus       604 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~  639 (695)
                      +.|++++|++++..  .+..+++|++|++++|++++
T Consensus       198 ~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          198 IEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred             CEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence            99999999888544  37888889999999988875

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=1.5e-20  Score=188.75  Aligned_cols=167  Identities=25%  Similarity=0.339  Sum_probs=79.4

Q ss_pred             CCCcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEe
Q 036216            3 PSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLG   82 (695)
Q Consensus         3 ~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   82 (695)
                      ++|++|++++|.++.++  .+..+++|++|++++|.+.+  ++. +..+++|++|++++|.+++.  ..+..+++|++|+
T Consensus        41 ~~L~~L~l~~~~i~~l~--~~~~l~~L~~L~L~~n~i~~--~~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~  113 (308)
T 1h6u_A           41 DGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITD--LAP-LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLD  113 (308)
T ss_dssp             HTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCC--CGG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEE
T ss_pred             CCcCEEEeeCCCccCch--hhhccCCCCEEEccCCcCCC--Chh-HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEE
Confidence            34555555555555543  24455555555555555554  333 44555555555555555432  2455555555555


Q ss_pred             CCCCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccC
Q 036216           83 LPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALAS  162 (695)
Q Consensus        83 L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~  162 (695)
                      +++|.+++. + .+..+++|++|++++|.+++..+  ++.+++|++|++++|++.+..+      +..+.. |+.|++++
T Consensus       114 l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~------l~~l~~-L~~L~l~~  182 (308)
T 1h6u_A          114 LTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP------LANLSK-LTTLKADD  182 (308)
T ss_dssp             CTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG------GTTCTT-CCEEECCS
T ss_pred             CCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh------hcCCCC-CCEEECCC
Confidence            555555532 2 15555555555555555553222  4555555555555555443211      222222 44444444


Q ss_pred             cccccccchhcCCCCCCCEEEccCCCc
Q 036216          163 SSISGHLTDQLGQFKNLDSLDLSNNSI  189 (695)
Q Consensus       163 n~~~~~~~~~l~~l~~L~~L~L~~n~i  189 (695)
                      |.+++..+  +..+++|++|++++|++
T Consensus       183 n~l~~~~~--l~~l~~L~~L~L~~N~l  207 (308)
T 1h6u_A          183 NKISDISP--LASLPNLIEVHLKNNQI  207 (308)
T ss_dssp             SCCCCCGG--GGGCTTCCEEECTTSCC
T ss_pred             CccCcChh--hcCCCCCCEEEccCCcc
Confidence            44443322  44444444444444444

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=1.6e-21  Score=199.34  Aligned_cols=251  Identities=19%  Similarity=0.214  Sum_probs=162.9

Q ss_pred             CCCEEECCCCCCCCCCCchhhcCC--CCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCCCCCCC-chhhhcCCCCCCE
Q 036216           28 TLTTLDLSHNQFDNSFVPAWVFGL--SRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSS-VPKWFDRLTHLEH  104 (695)
Q Consensus        28 ~L~~L~Ls~n~i~~~~~~~~~~~l--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~  104 (695)
                      .++.++++++.+.    +..+..+  +++++|++++|.+.+..+. +..+++|++|++++|.+++. +|..+..+++|++
T Consensus        48 ~~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~  122 (336)
T 2ast_B           48 LWQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN  122 (336)
T ss_dssp             TSSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred             hheeeccccccCC----HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence            4677888877764    4455555  7788888888887755544 45678888888888877654 6667777888888


Q ss_pred             EEcccCcCCcccchhhcCCCCCCEEEccCC-cCccc-cchhhhhhhcccccccceEEccCc-ccccc-cchhcCCCC-CC
Q 036216          105 LSLSYNSLEGRIPRSMARLCNLRRLYLGGA-KLNQE-ISEILEIFSGCVSNGLESLALASS-SISGH-LTDQLGQFK-NL  179 (695)
Q Consensus       105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~~~~~~~~~L~~L~L~~n-~~~~~-~~~~l~~l~-~L  179 (695)
                      |++++|.+.+..+..++.+++|++|++++| .+++. .+.    .+..++. |++|++++| .+++. ++..+..++ +|
T Consensus       123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~----~~~~~~~-L~~L~l~~~~~l~~~~~~~~~~~l~~~L  197 (336)
T 2ast_B          123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT----LLSSCSR-LDELNLSWCFDFTEKHVQVAVAHVSETI  197 (336)
T ss_dssp             EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHH----HHHHCTT-CCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred             EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHH----HHhcCCC-CCEEcCCCCCCcChHHHHHHHHhcccCC
Confidence            888888777667777777888888888887 55542 222    3444554 777777777 66654 456677777 88


Q ss_pred             CEEEccCCC--cCCCceEEeeccccccccChhhhhCCCCCCEEEccccc-ceeecCCCCCCCCCccEEEccCCC-CCCCC
Q 036216          180 DSLDLSNNS--IVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANK-LTLKVKRDWIPPFQLIELGLRSCD-VGSRF  255 (695)
Q Consensus       180 ~~L~L~~n~--i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l~~~~-~~~~~  255 (695)
                      ++|++++|.  +++            +.++. .+.++++|+.|++++|. ++......+..+++|++|++++|. +....
T Consensus       198 ~~L~l~~~~~~~~~------------~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  264 (336)
T 2ast_B          198 TQLNLSGYRKNLQK------------SDLST-LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET  264 (336)
T ss_dssp             CEEECCSCGGGSCH------------HHHHH-HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGG
T ss_pred             CEEEeCCCcccCCH------------HHHHH-HHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHH
Confidence            888888874  320            12333 45677788888887777 555555566666777777777774 22221


Q ss_pred             CccccCCCCCCEEEcccCCCccccChHHhhcc-cccceeecccccccccccC
Q 036216          256 PLWLYSQKDLQFLDLFNSGISGTFPNRLLKSA-SQLYLLDLGHNQIHGELTN  306 (695)
Q Consensus       256 ~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~  306 (695)
                      ...+..+++|++|++++| +.    ...+..+ ..++.|++++|.+++..+.
T Consensus       265 ~~~l~~~~~L~~L~l~~~-i~----~~~~~~l~~~l~~L~l~~n~l~~~~~~  311 (336)
T 2ast_B          265 LLELGEIPTLKTLQVFGI-VP----DGTLQLLKEALPHLQINCSHFTTIARP  311 (336)
T ss_dssp             GGGGGGCTTCCEEECTTS-SC----TTCHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred             HHHHhcCCCCCEEeccCc-cC----HHHHHHHHhhCcceEEecccCccccCC
Confidence            224566777777777776 33    2212222 2355566677766665553

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=3.4e-21  Score=186.25  Aligned_cols=196  Identities=15%  Similarity=0.143  Sum_probs=158.4

Q ss_pred             ccceeecccccccCCCCccccCCCCCCEEeCCCCc-ccccCCccccCCCCCcEEECcC-CcceeeCCccccCCCCCcEEE
Q 036216          361 KLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNK-FTGNLPTSLGSLSSLVSLHLRK-NRLSGTIPILLKNCTSLVTLD  438 (695)
Q Consensus       361 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~-~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~  438 (695)
                      ++++|++++|.+++..+..|..+++|++|++++|. ++...+..|..+++|++|++++ |++++..+..|.++++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            66777777777776666678888889999999886 7766667888889999999988 888877777888899999999


Q ss_pred             cCCCcccccCChhhhhcCCCCc---EEEcCCC-cccccCCccccCCCCCC-EEeCCCCcCcccCChh-hhhcccCcccCC
Q 036216          439 VGENEVFGNIPSWFGERFSRMV---LLILRSN-NFDGPLPTELCDLAFLQ-ILDLADNNLSGTIPNC-IHNLTAMATVNP  512 (695)
Q Consensus       439 l~~n~~~~~~~~~~~~~l~~L~---~L~l~~n-~~~~~~~~~l~~l~~L~-~L~L~~n~l~~~~p~~-~~~l~~L~~l~~  512 (695)
                      +++|.+.+ +|. + ..+++|+   +|++++| ++.+..+..|..+++|+ +|++++|+++ .+|.. +.. ++      
T Consensus       112 l~~n~l~~-lp~-~-~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~------  180 (239)
T 2xwt_C          112 IFNTGLKM-FPD-L-TKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TK------  180 (239)
T ss_dssp             EEEECCCS-CCC-C-TTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CE------
T ss_pred             CCCCCCcc-ccc-c-ccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-CC------
Confidence            99998854 676 3 3678887   9999999 88877777799999999 9999999998 55542 322 33      


Q ss_pred             CCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCcc-ccccCCccccCC-CCCCEEeccCCccc
Q 036216          513 FTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNL-FSGTLPMGLTNL-KAVQSLNLSYNIFT  590 (695)
Q Consensus       513 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~-l~~~~p~~l~~l-~~L~~L~Ls~n~l~  590 (695)
                                                                |+.|++++|+ +++..+..|..+ ++|++|++++|+++
T Consensus       181 ------------------------------------------L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~  218 (239)
T 2xwt_C          181 ------------------------------------------LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT  218 (239)
T ss_dssp             ------------------------------------------EEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred             ------------------------------------------CCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence                                                      4889999995 987778889999 99999999999999


Q ss_pred             ccCCccccCcCCCCEEECCCCc
Q 036216          591 GRIPETIGTMRSLESIDFSVNK  612 (695)
Q Consensus       591 ~~~p~~~~~l~~L~~L~Ls~n~  612 (695)
                       .+|..  .+++|+.|+++++.
T Consensus       219 -~l~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          219 -ALPSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             -CCCCT--TCTTCSEEECTTC-
T ss_pred             -cCChh--HhccCceeeccCcc
Confidence             55553  68899999998874

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.85  E-value=2.4e-21  Score=195.18  Aligned_cols=231  Identities=18%  Similarity=0.111  Sum_probs=130.5

Q ss_pred             CCCEEECCCCCCCCCCCchh--hcCCCCCCEEEcCCCcCcccCCccC--CCCCCCCEEeCCCCCCCCCch----hhhcCC
Q 036216           28 TLTTLDLSHNQFDNSFVPAW--VFGLSRLHFLNLGYNNFQGPIPEGL--QNLTSLKHLGLPFNHFSSSVP----KWFDRL   99 (695)
Q Consensus        28 ~L~~L~Ls~n~i~~~~~~~~--~~~l~~L~~L~Ls~n~i~~~~~~~~--~~l~~L~~L~L~~n~l~~~~p----~~~~~l   99 (695)
                      .++.+.+.++.+....+...  +..+++|++|++++|.+.+..|..+  ..+++|++|++++|.+++..+    ..+..+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            45667776666543211111  1234567777777777777777766  777777777777777775433    344567


Q ss_pred             CCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCcccccccchhcCCCCCC
Q 036216          100 THLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNL  179 (695)
Q Consensus       100 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L  179 (695)
                      ++|++|++++|.+.+..+..++.+++|++|++++|++.+.....                         .+..++.+++|
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-------------------------~~~~~~~l~~L  199 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLM-------------------------AALCPHKFPAI  199 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHH-------------------------TTSCTTSSCCC
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhh-------------------------HHHhhhcCCCC
Confidence            77777777777777666677777777777777777764321100                         01123456677


Q ss_pred             CEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCC---CCccEEEccCCCCCCCCC
Q 036216          180 DSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPP---FQLIELGLRSCDVGSRFP  256 (695)
Q Consensus       180 ~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~  256 (695)
                      ++|++++|+++..           +.++...+.++++|+.|++++|.+.+..+..+..+   ++|++|++++|.+. .+|
T Consensus       200 ~~L~Ls~N~l~~l-----------~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp  267 (310)
T 4glp_A          200 QNLALRNTGMETP-----------TGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVP  267 (310)
T ss_dssp             CSCBCCSSCCCCH-----------HHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCC
T ss_pred             CEEECCCCCCCch-----------HHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chh
Confidence            7777777766411           01111134566777777777777665544444333   35555555555554 233


Q ss_pred             ccccCCCCCCEEEcccCCCccccChHHhhcccccceeecccccc
Q 036216          257 LWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQI  300 (695)
Q Consensus       257 ~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l  300 (695)
                      ..+.  ++|++|++++|.++ .+|.  +..+++|+.|++++|++
T Consensus       268 ~~~~--~~L~~L~Ls~N~l~-~~~~--~~~l~~L~~L~L~~N~l  306 (310)
T 4glp_A          268 KGLP--AKLRVLDLSSNRLN-RAPQ--PDELPEVDNLTLDGNPF  306 (310)
T ss_dssp             SCCC--SCCSCEECCSCCCC-SCCC--TTSCCCCSCEECSSTTT
T ss_pred             hhhc--CCCCEEECCCCcCC-CCch--hhhCCCccEEECcCCCC
Confidence            3332  44555555555554 2222  23344444444444444

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.83  E-value=5.2e-20  Score=173.72  Aligned_cols=160  Identities=26%  Similarity=0.309  Sum_probs=76.2

Q ss_pred             CCcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeC
Q 036216            4 SLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGL   83 (695)
Q Consensus         4 ~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L   83 (695)
                      +|++|++++|.++.++...|..+++|++|++++|.++.. .+..+..+++|++|++++|.+++..+..|..+++|++|++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  107 (208)
T 2o6s_A           29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL  107 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc-ChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence            445555555555554444444555555555555555442 2223344555555555555554444444445555555555


Q ss_pred             CCCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCc
Q 036216           84 PFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASS  163 (695)
Q Consensus        84 ~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n  163 (695)
                      ++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+.            ++.|++..|
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~------------l~~L~~~~n  175 (208)
T 2o6s_A          108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG------------IRYLSEWIN  175 (208)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTTT------------THHHHHHHH
T ss_pred             CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCCC------------HHHHHHHHH
Confidence            55555444444444455555555555555443333444455555555555544333222            444444445


Q ss_pred             ccccccchhcCCC
Q 036216          164 SISGHLTDQLGQF  176 (695)
Q Consensus       164 ~~~~~~~~~l~~l  176 (695)
                      .+++.+|..++.+
T Consensus       176 ~~~g~ip~~~~~l  188 (208)
T 2o6s_A          176 KHSGVVRNSAGSV  188 (208)
T ss_dssp             HCTTTBBCTTSSB
T ss_pred             hCCceeeccCccc
Confidence            5554444444433

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.82  E-value=1.1e-19  Score=186.06  Aligned_cols=239  Identities=15%  Similarity=0.074  Sum_probs=168.2

Q ss_pred             cEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccC-CccCCCCCCCCE-EeC
Q 036216            6 VELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPI-PEGLQNLTSLKH-LGL   83 (695)
Q Consensus         6 ~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~-L~L   83 (695)
                      ++++.++++++.+|...   .+++++|+|++|+|+.+ .+++|.++++|++|+|++|++.+.+ +.+|.+++++++ +.+
T Consensus        12 ~~v~C~~~~Lt~iP~~l---~~~l~~L~Ls~N~i~~i-~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDL---PRNAIELRFVLTKLRVI-QKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCCSCCTTC---CTTCSEEEEESCCCSEE-CTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCCccCcCc---CCCCCEEEccCCcCCCc-CHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            67888999999998743   36899999999999873 3356889999999999999986544 467889988775 666


Q ss_pred             CCCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccC-CcCccccchhhhhhhcccccccceEEccC
Q 036216           84 PFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGG-AKLNQEISEILEIFSGCVSNGLESLALAS  162 (695)
Q Consensus        84 ~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~~~~~~L~~L~L~~  162 (695)
                      ++|+++...|..|..+++|++|++++|.+....+..+....++..+++.+ +.+....+.    .+......++.|++++
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~----~f~~~~~~l~~L~L~~  163 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERN----SFVGLSFESVILWLNK  163 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTT----SSTTSBSSCEEEECCS
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccccccccccc----chhhcchhhhhhcccc
Confidence            77889877788899999999999999999876666777777888888865 455544333    3333444478888888


Q ss_pred             cccccccchhcCCCCCCCEEEccC-CCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCCCCc
Q 036216          163 SSISGHLTDQLGQFKNLDSLDLSN-NSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQL  241 (695)
Q Consensus       163 n~~~~~~~~~l~~l~~L~~L~L~~-n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L  241 (695)
                      |.++.+.+..+ ...+|++|++++ |.++              .++...|.++++|+.|++++|+++......+   .+|
T Consensus       164 N~i~~i~~~~f-~~~~L~~l~l~~~n~l~--------------~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L  225 (350)
T 4ay9_X          164 NGIQEIHNSAF-NGTQLDELNLSDNNNLE--------------ELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENL  225 (350)
T ss_dssp             SCCCEECTTSS-TTEEEEEEECTTCTTCC--------------CCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTC
T ss_pred             ccccCCChhhc-cccchhHHhhccCCccc--------------CCCHHHhccCcccchhhcCCCCcCccChhhh---ccc
Confidence            88877555444 456788888864 5554              6777778888888888888887775444333   334


Q ss_pred             cEEEccCCCCCCCCCccccCCCCCCEEEcc
Q 036216          242 IELGLRSCDVGSRFPLWLYSQKDLQFLDLF  271 (695)
Q Consensus       242 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  271 (695)
                      +.|.+.++.....+| .+..+++|+.+++.
T Consensus       226 ~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~  254 (350)
T 4ay9_X          226 KKLRARSTYNLKKLP-TLEKLVALMEASLT  254 (350)
T ss_dssp             CEEECTTCTTCCCCC-CTTTCCSCCEEECS
T ss_pred             hHhhhccCCCcCcCC-CchhCcChhhCcCC
Confidence            444444433333333 24444555555443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.82  E-value=3.1e-19  Score=168.40  Aligned_cols=179  Identities=23%  Similarity=0.182  Sum_probs=129.1

Q ss_pred             cEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCC
Q 036216            6 VELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPF   85 (695)
Q Consensus         6 ~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~   85 (695)
                      +.++++++.++.+|...   .++|++|++++|.++.. .+..+..+++|++|++++|+++...+..|..+++|++|++++
T Consensus        10 ~~v~c~~~~l~~~p~~~---~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~   85 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGI---PAQTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST   85 (208)
T ss_dssp             TEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEecCCCccCCCCCC---CCCCcEEEcCCCccCcC-ChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence            56788888888887532   35788888888888864 455567888888888888888866666778888888888888


Q ss_pred             CCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCccc
Q 036216           86 NHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSI  165 (695)
Q Consensus        86 n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~  165 (695)
                      |.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|++++.                          
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~--------------------------  139 (208)
T 2o6s_A           86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSV--------------------------  139 (208)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC--------------------------
T ss_pred             CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCcccee--------------------------
Confidence            888866666678888888888888888866666677777777777777766532                          


Q ss_pred             ccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCC
Q 036216          166 SGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPP  238 (695)
Q Consensus       166 ~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~  238 (695)
                         .+..+..+++|++|++++|.+.                     ..++.|+.+++..|.+++.++..++.+
T Consensus       140 ---~~~~~~~l~~L~~L~l~~N~~~---------------------~~~~~l~~L~~~~n~~~g~ip~~~~~l  188 (208)
T 2o6s_A          140 ---PDGVFDRLTSLQYIWLHDNPWD---------------------CTCPGIRYLSEWINKHSGVVRNSAGSV  188 (208)
T ss_dssp             ---CTTTTTTCTTCCEEECCSCCBC---------------------CCTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred             ---CHHHhccCCCccEEEecCCCee---------------------cCCCCHHHHHHHHHhCCceeeccCccc
Confidence               2334666777778888777653                     334556666666666665555554433

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.81  E-value=1.8e-19  Score=193.72  Aligned_cols=79  Identities=23%  Similarity=0.378  Sum_probs=44.7

Q ss_pred             cEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCC-------CEEECCCCcccccCCcCCcCCCCCC
Q 036216          556 RIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSL-------ESIDFSVNKFTGEIPQSMSSLTFLN  628 (695)
Q Consensus       556 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L-------~~L~Ls~n~l~~~~p~~l~~l~~L~  628 (695)
                      +.|++++|++++ +|. |.  ++|+.|+|++|.|+ .+|. |..  +|       +.|+|++|+++ .+|..+..+++|+
T Consensus       163 ~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~  233 (571)
T 3cvr_A          163 EVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTC  233 (571)
T ss_dssp             CEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTE
T ss_pred             CEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCC
Confidence            455555555553 444 43  56666666666665 4444 433  44       66666666666 4566555566666


Q ss_pred             EEEcccCcCcccCCC
Q 036216          629 HLNLSNNYLTGKIPS  643 (695)
Q Consensus       629 ~L~ls~N~l~~~iP~  643 (695)
                      +|++++|++++.+|.
T Consensus       234 ~L~L~~N~l~~~~p~  248 (571)
T 3cvr_A          234 TIILEDNPLSSRIRE  248 (571)
T ss_dssp             EEECCSSSCCHHHHH
T ss_pred             EEEeeCCcCCCcCHH
Confidence            666666666665554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.81  E-value=1.2e-19  Score=172.19  Aligned_cols=157  Identities=18%  Similarity=0.199  Sum_probs=124.4

Q ss_pred             cEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCC-ccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCC
Q 036216          435 VTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLP-TELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPF  513 (695)
Q Consensus       435 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~  513 (695)
                      +.+++++|.+ +.+|..+   .+.++.|++++|++++..+ ..|..+++|++|++++|++++..+..|.++++|      
T Consensus        14 ~~l~~s~n~l-~~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L------   83 (220)
T 2v70_A           14 TTVDCSNQKL-NKIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV------   83 (220)
T ss_dssp             TEEECCSSCC-SSCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTC------
T ss_pred             CEeEeCCCCc-ccCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCC------
Confidence            3566666665 4455533   3345677777777776543 446778888888888888886666667666655      


Q ss_pred             CCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccC
Q 036216          514 TGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRI  593 (695)
Q Consensus       514 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~  593 (695)
                                                                ++|+|++|++++..+..|..+++|++|+|++|++++..
T Consensus        84 ------------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  121 (220)
T 2v70_A           84 ------------------------------------------NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVG  121 (220)
T ss_dssp             ------------------------------------------CEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBC
T ss_pred             ------------------------------------------CEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeEC
Confidence                                                      77888888888777778899999999999999999888


Q ss_pred             CccccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEEcccCcCcccCCC
Q 036216          594 PETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPS  643 (695)
Q Consensus       594 p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~iP~  643 (695)
                      |..|+.+++|+.|+|++|++++..|..|..+++|++|++++|++.+..+-
T Consensus       122 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l  171 (220)
T 2v70_A          122 NDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL  171 (220)
T ss_dssp             TTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred             HhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence            99999999999999999999988899999999999999999999876653

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.80  E-value=2.4e-19  Score=192.77  Aligned_cols=188  Identities=28%  Similarity=0.370  Sum_probs=130.1

Q ss_pred             ccceeecccccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcC
Q 036216          361 KLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVG  440 (695)
Q Consensus       361 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  440 (695)
                      +++.|++++|.+++ +|..+  .++|++|++++|.++ .+|   ..+++|++|++++|++++ +|. +..  +|++|+++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            67777777777764 55444  267777777777777 455   345777777887777775 555 444  77788888


Q ss_pred             CCcccccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccc
Q 036216          441 ENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEY  520 (695)
Q Consensus       441 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~  520 (695)
                      +|.+.+ +|.    .+++|+.|++++|.+++ +|.   .+++|++|++++|++++ +|. +.  ++              
T Consensus       129 ~N~l~~-lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~--------------  181 (571)
T 3cvr_A          129 NNQLTM-LPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ES--------------  181 (571)
T ss_dssp             SSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TT--------------
T ss_pred             CCcCCC-CCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CC--------------
Confidence            777744 665    36777888888887775 454   46778888888887774 544 32  22              


Q ss_pred             cCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCC-------CEEeccCCcccccC
Q 036216          521 SFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAV-------QSLNLSYNIFTGRI  593 (695)
Q Consensus       521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L-------~~L~Ls~n~l~~~~  593 (695)
                                                        |+.|+|++|+|+ .+|. +..  +|       +.|+|++|.++ .+
T Consensus       182 ----------------------------------L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~l  222 (571)
T 3cvr_A          182 ----------------------------------LEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HI  222 (571)
T ss_dssp             ----------------------------------CCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CC
T ss_pred             ----------------------------------CCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ec
Confidence                                              367778888777 5555 544  66       88888888888 67


Q ss_pred             CccccCcCCCCEEECCCCcccccCCcCCcCCC
Q 036216          594 PETIGTMRSLESIDFSVNKFTGEIPQSMSSLT  625 (695)
Q Consensus       594 p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~  625 (695)
                      |..+..+++|+.|+|++|.+++.+|..+..++
T Consensus       223 p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          223 PENILSLDPTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             CGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             CHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence            77777788888888888888887777766543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.80  E-value=4.2e-19  Score=181.80  Aligned_cols=244  Identities=16%  Similarity=0.121  Sum_probs=180.9

Q ss_pred             CcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeCCCCcccccC-CccccCCCCCcE
Q 036216          334 LTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNL-PTSLGSLSSLVS  412 (695)
Q Consensus       334 L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~-~~~~~~l~~L~~  412 (695)
                      -++++.++++++. +|..+      .+++++|++++|+++...+.+|.++++|++|++++|++.+.+ +.+|.+++++++
T Consensus        11 ~~~v~C~~~~Lt~-iP~~l------~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~   83 (350)
T 4ay9_X           11 NRVFLCQESKVTE-IPSDL------PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHE   83 (350)
T ss_dssp             TTEEEEESTTCCS-CCTTC------CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCE
T ss_pred             CCEEEecCCCCCc-cCcCc------CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhh
Confidence            3678888888874 44332      247899999999999666678999999999999999986544 457888888775


Q ss_pred             -EECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCC-CcccccCCccccCCC-CCCEEeCC
Q 036216          413 -LHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRS-NNFDGPLPTELCDLA-FLQILDLA  489 (695)
Q Consensus       413 -L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~l~~l~-~L~~L~L~  489 (695)
                       +.+..|++....|..|..+++|++|++++|.+.. +|...+....++..+++.+ +++....+..|..+. .++.|+++
T Consensus        84 ~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~  162 (350)
T 4ay9_X           84 IRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH-LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLN  162 (350)
T ss_dssp             EEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSS-CCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECC
T ss_pred             hhcccCCcccccCchhhhhcccccccccccccccc-CCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccc
Confidence             5667788998888999999999999999999854 4443333566788888865 566655555666664 68899999


Q ss_pred             CCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCC-cccccc
Q 036216          490 DNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSK-NLFSGT  568 (695)
Q Consensus       490 ~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~-n~l~~~  568 (695)
                      +|+|+. +|.......+                                                ++.+++++ |.++..
T Consensus       163 ~N~i~~-i~~~~f~~~~------------------------------------------------L~~l~l~~~n~l~~i  193 (350)
T 4ay9_X          163 KNGIQE-IHNSAFNGTQ------------------------------------------------LDELNLSDNNNLEEL  193 (350)
T ss_dssp             SSCCCE-ECTTSSTTEE------------------------------------------------EEEEECTTCTTCCCC
T ss_pred             cccccC-CChhhccccc------------------------------------------------hhHHhhccCCcccCC
Confidence            999984 4433222222                                                37788875 566644


Q ss_pred             CCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEEcccCcCc
Q 036216          569 LPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLT  638 (695)
Q Consensus       569 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~  638 (695)
                      .+..|..+++|++|+|++|+++ .+|.  +.+..|+.|.+.++.-...+| .+.++++|+.++++++.-.
T Consensus       194 ~~~~f~~l~~L~~LdLs~N~l~-~lp~--~~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~~c  259 (350)
T 4ay9_X          194 PNDVFHGASGPVILDISRTRIH-SLPS--YGLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYPSHC  259 (350)
T ss_dssp             CTTTTTTEECCSEEECTTSCCC-CCCS--SSCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHHHH
T ss_pred             CHHHhccCcccchhhcCCCCcC-ccCh--hhhccchHhhhccCCCcCcCC-CchhCcChhhCcCCCCccc
Confidence            4457899999999999999999 5554  335677777776665555777 4889999999999876543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.78  E-value=1.8e-18  Score=164.18  Aligned_cols=154  Identities=17%  Similarity=0.203  Sum_probs=124.1

Q ss_pred             cEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCC
Q 036216          435 VTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFT  514 (695)
Q Consensus       435 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~  514 (695)
                      +.++++++.+ ..+|..+   .++++.|++++|++.+..+..|..+++|++|++++|++++..|..|.++++|       
T Consensus        14 ~~v~c~~~~l-~~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L-------   82 (220)
T 2v9t_B           14 NIVDCRGKGL-TEIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL-------   82 (220)
T ss_dssp             TEEECTTSCC-SSCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSC-------
T ss_pred             CEEEcCCCCc-CcCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCC-------
Confidence            4566666665 4555543   3567777888887776666678888888888888888887777777777665       


Q ss_pred             CCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCC
Q 036216          515 GNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIP  594 (695)
Q Consensus       515 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p  594 (695)
                                                               ++|+|++|++++..+..|..+++|++|+|++|++++..|
T Consensus        83 -----------------------------------------~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~  121 (220)
T 2v9t_B           83 -----------------------------------------NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRV  121 (220)
T ss_dssp             -----------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             -----------------------------------------CEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCH
Confidence                                                     788888888886666667889999999999999998888


Q ss_pred             ccccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEEcccCcCccc
Q 036216          595 ETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGK  640 (695)
Q Consensus       595 ~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~  640 (695)
                      ..|+.+++|+.|+|++|++++..+..|..+++|++|++++|++...
T Consensus       122 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  167 (220)
T 2v9t_B          122 DAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD  167 (220)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             HHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence            8999999999999999999987777899999999999999998753

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.77  E-value=4.8e-18  Score=168.77  Aligned_cols=185  Identities=24%  Similarity=0.303  Sum_probs=132.5

Q ss_pred             EcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCCCC
Q 036216            9 DLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHF   88 (695)
Q Consensus         9 ~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l   88 (695)
                      .+..+.++.+.  .+..+++|++|++++|.+..  ++ .+..+++|++|++++|++++..+  +..+++|++|++++|.+
T Consensus        30 ~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~--~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l  102 (291)
T 1h6t_A           30 NLKKKSVTDAV--TQNELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV  102 (291)
T ss_dssp             HTTCSCTTSEE--CHHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             HhcCCCccccc--chhhcCcccEEEccCCCccc--Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcC
Confidence            34444444433  24567778888888888776  44 36678888888888888875443  77888888888888888


Q ss_pred             CCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCcccccc
Q 036216           89 SSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGH  168 (695)
Q Consensus        89 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~  168 (695)
                      ++ +| .+..+++|++|++++|.+++.  ..+..+++|++|++++|++.+.  .    .++.+.. |++|++++|.+.+.
T Consensus       103 ~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~----~l~~l~~-L~~L~L~~N~l~~~  171 (291)
T 1h6t_A          103 KD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--T----VLSRLTK-LDTLSLEDNQISDI  171 (291)
T ss_dssp             CC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--G----GGGGCTT-CSEEECCSSCCCCC
T ss_pred             CC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--h----hhccCCC-CCEEEccCCccccc
Confidence            74 33 477888888888888887753  4677788888888888877664  1    3445555 77788877777775


Q ss_pred             cchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEccccccee
Q 036216          169 LTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTL  229 (695)
Q Consensus       169 ~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~  229 (695)
                      .+  +..+++|++|++++|.++              .++  .+..+++|+.|++++|++..
T Consensus       172 ~~--l~~l~~L~~L~L~~N~i~--------------~l~--~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          172 VP--LAGLTKLQNLYLSKNHIS--------------DLR--ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             GG--GTTCTTCCEEECCSSCCC--------------BCG--GGTTCTTCSEEEEEEEEEEC
T ss_pred             hh--hcCCCccCEEECCCCcCC--------------CCh--hhccCCCCCEEECcCCcccC
Confidence            54  778888888888888875              343  36778888888888887764

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.77  E-value=3.9e-18  Score=163.03  Aligned_cols=158  Identities=19%  Similarity=0.228  Sum_probs=130.9

Q ss_pred             CcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCC
Q 036216          434 LVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPF  513 (695)
Q Consensus       434 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~  513 (695)
                      -+.++.+++.+ +.+|..+   .++|++|++++|.+++..|..|..+++|++|++++|++++..+..|..+++|      
T Consensus        21 ~~~v~c~~~~l-~~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L------   90 (229)
T 3e6j_A           21 GTTVDCRSKRH-ASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQL------   90 (229)
T ss_dssp             TTEEECTTSCC-SSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC------
T ss_pred             CCEeEccCCCc-CccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCc------
Confidence            45667766666 5666543   4778888888888888778888888999999999998875444556666555      


Q ss_pred             CCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccC
Q 036216          514 TGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRI  593 (695)
Q Consensus       514 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~  593 (695)
                                                                +.|+|++|++++..+..|..+++|++|+|++|+++ .+
T Consensus        91 ------------------------------------------~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~l  127 (229)
T 3e6j_A           91 ------------------------------------------TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-EL  127 (229)
T ss_dssp             ------------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SC
T ss_pred             ------------------------------------------CEEECCCCcCCccChhHhCcchhhCeEeccCCccc-cc
Confidence                                                      78889999998777777899999999999999999 88


Q ss_pred             CccccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEEcccCcCcccCCCC
Q 036216          594 PETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSS  644 (695)
Q Consensus       594 p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~iP~~  644 (695)
                      |..+..+++|+.|+|++|++++..+..+..+++|+.|++++|++.+..+..
T Consensus       128 p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~  178 (229)
T 3e6j_A          128 PRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDI  178 (229)
T ss_dssp             CTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGGG
T ss_pred             CcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcchh
Confidence            899999999999999999999777778999999999999999999876643

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.77  E-value=5.1e-18  Score=168.57  Aligned_cols=169  Identities=25%  Similarity=0.356  Sum_probs=149.0

Q ss_pred             CCCCcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEE
Q 036216            2 LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHL   81 (695)
Q Consensus         2 l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   81 (695)
                      +++|++|++++|.++.++  .+..+++|++|++++|.+++  ++. +..+++|++|++++|.+++.  ..+..+++|++|
T Consensus        45 l~~L~~L~l~~~~i~~~~--~~~~l~~L~~L~L~~n~l~~--~~~-l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L  117 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTD--IKP-LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSL  117 (291)
T ss_dssp             HHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEE
T ss_pred             cCcccEEEccCCCcccCh--hHhcCCCCCEEEccCCccCC--Ccc-cccCCCCCEEECCCCcCCCC--hhhccCCCCCEE
Confidence            468999999999999986  48899999999999999998  555 88999999999999999853  359999999999


Q ss_pred             eCCCCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEcc
Q 036216           82 GLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALA  161 (695)
Q Consensus        82 ~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~  161 (695)
                      ++++|.+++.  ..+..+++|++|++++|.+++.  ..+..+++|++|++++|++.+..+      +..+.. |+.|+++
T Consensus       118 ~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~------l~~l~~-L~~L~L~  186 (291)
T 1h6t_A          118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP------LAGLTK-LQNLYLS  186 (291)
T ss_dssp             ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG------GTTCTT-CCEEECC
T ss_pred             ECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh------hcCCCc-cCEEECC
Confidence            9999999964  4689999999999999999965  689999999999999999987643      445555 9999999


Q ss_pred             CcccccccchhcCCCCCCCEEEccCCCcC
Q 036216          162 SSSISGHLTDQLGQFKNLDSLDLSNNSIV  190 (695)
Q Consensus       162 ~n~~~~~~~~~l~~l~~L~~L~L~~n~i~  190 (695)
                      +|.+++. + .+..+++|+.|++++|+++
T Consensus       187 ~N~i~~l-~-~l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          187 KNHISDL-R-ALAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             SSCCCBC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred             CCcCCCC-h-hhccCCCCCEEECcCCccc
Confidence            9999885 3 4899999999999999886

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.76  E-value=2.4e-18  Score=176.88  Aligned_cols=180  Identities=27%  Similarity=0.282  Sum_probs=124.4

Q ss_pred             cEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhc-CCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCC
Q 036216            6 VELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVF-GLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLP   84 (695)
Q Consensus         6 ~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~   84 (695)
                      ++++++++.++.+|...   .+.+++|+|++|.|+.. .+..+. ++++|++|+|++|+++...+..|.++++|++|+|+
T Consensus        21 ~~l~c~~~~l~~iP~~~---~~~l~~L~Ls~N~l~~l-~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSL---PSYTALLDLSHNNLSRL-RAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCSSCCSSC---CTTCSEEECCSSCCCEE-CTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcCccCccC---CCCCCEEECCCCCCCcc-ChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            56788888888887632   24578888888888774 444455 78888888888888887777778888888888888


Q ss_pred             CCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCcc
Q 036216           85 FNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSS  164 (695)
Q Consensus        85 ~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~  164 (695)
                      +|++++..+..|..+++|++|+|++|.+.+..+..|..+++|++|++++|++....+..    +.               
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~----~~---------------  157 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVEL----IK---------------  157 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGG----TC---------------
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHH----hc---------------
Confidence            88888766667888888888888888888777778888888888888888776543331    10               


Q ss_pred             cccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCC--CCEEEccccccee
Q 036216          165 ISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTK--LSVFLVGANKLTL  229 (695)
Q Consensus       165 ~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~--L~~L~l~~n~l~~  229 (695)
                             .+..+++|+.|+|++|+|+              .++...+..++.  ++.|++++|.+..
T Consensus       158 -------~~~~l~~L~~L~L~~N~l~--------------~l~~~~~~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          158 -------DGNKLPKLMLLDLSSNKLK--------------KLPLTDLQKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             -----------CTTCCEEECCSSCCC--------------CCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred             -------CcccCCcCCEEECCCCCCC--------------ccCHHHhhhccHhhcceEEecCCCccC
Confidence                   0134556666666666654              445445555554  2556666666553

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.76  E-value=1.2e-17  Score=158.54  Aligned_cols=154  Identities=20%  Similarity=0.226  Sum_probs=116.8

Q ss_pred             cEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCC
Q 036216            6 VELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPF   85 (695)
Q Consensus         6 ~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~   85 (695)
                      ++++++++.++.+|...   ...+++|++++|.++....+..+..+++|++|+|++|.+++..+..|.++++|++|++++
T Consensus        14 ~~l~~s~n~l~~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCCCCcccCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            57888888888887632   245678888888887642224467888888888888888877777888888888888888


Q ss_pred             CCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCccc
Q 036216           86 NHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSI  165 (695)
Q Consensus        86 n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~  165 (695)
                      |.+++..+..|..+++|++|++++|.+++..|..|..+++|++|++++|++++.                          
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--------------------------  144 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTV--------------------------  144 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCB--------------------------
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEE--------------------------
Confidence            888877777788888888888888888877777777777777777777776543                          


Q ss_pred             ccccchhcCCCCCCCEEEccCCCcCC
Q 036216          166 SGHLTDQLGQFKNLDSLDLSNNSIVG  191 (695)
Q Consensus       166 ~~~~~~~l~~l~~L~~L~L~~n~i~~  191 (695)
                         .|..|..+++|++|++++|.+..
T Consensus       145 ---~~~~~~~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A          145 ---APGAFDTLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             ---CTTTTTTCTTCCEEECCSCCEEC
T ss_pred             ---CHHHhcCCCCCCEEEecCcCCcC
Confidence               45567778888888888888753

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.75  E-value=4.6e-18  Score=158.55  Aligned_cols=153  Identities=16%  Similarity=0.163  Sum_probs=85.0

Q ss_pred             CCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCCCCCCCchhhhcCCCCCC
Q 036216           24 ANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLE  103 (695)
Q Consensus        24 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~  103 (695)
                      ..+++|++|++++|.++.  +| .+..+++|++|++++|.++  .+..+..+++|++|++++|.+++..|..|+.+++|+
T Consensus        41 ~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  115 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTD--LT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT  115 (197)
T ss_dssp             HHHHTCCEEEEESSCCSC--CT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred             hhcCCccEEeccCCCccC--hH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence            344555556665555554  34 3555555666666555443  123455555666666666555544455555555666


Q ss_pred             EEEcccCcCCcccchhhcCCCCCCEEEccCCc-CccccchhhhhhhcccccccceEEccCcccccccchhcCCCCCCCEE
Q 036216          104 HLSLSYNSLEGRIPRSMARLCNLRRLYLGGAK-LNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSL  182 (695)
Q Consensus       104 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L  182 (695)
                      +|++++|.+++..+..++.+++|++|++++|+ +.. ++     .+..++. |+.|++++|.+++..  .+..+++|++|
T Consensus       116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-----~l~~l~~-L~~L~l~~n~i~~~~--~l~~l~~L~~L  186 (197)
T 4ezg_A          116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-----PLKTLPE-LKSLNIQFDGVHDYR--GIEDFPKLNQL  186 (197)
T ss_dssp             EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-----GGGGCSS-CCEEECTTBCCCCCT--TGGGCSSCCEE
T ss_pred             EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-----hhcCCCC-CCEEECCCCCCcChH--HhccCCCCCEE
Confidence            66666665555455555555666666666555 322 22     2233333 666666666655532  57788888999


Q ss_pred             EccCCCcC
Q 036216          183 DLSNNSIV  190 (695)
Q Consensus       183 ~L~~n~i~  190 (695)
                      ++++|+|.
T Consensus       187 ~l~~N~i~  194 (197)
T 4ezg_A          187 YAFSQTIG  194 (197)
T ss_dssp             EECBC---
T ss_pred             EeeCcccC
Confidence            98888874

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.75  E-value=1e-17  Score=158.83  Aligned_cols=152  Identities=22%  Similarity=0.262  Sum_probs=96.8

Q ss_pred             cEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCC
Q 036216            6 VELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPF   85 (695)
Q Consensus         6 ~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~   85 (695)
                      +.++++++.++.+|...   .+++++|++++|.|+.+ .+..|..+++|++|+|++|.+++..|..|.++++|++|+|++
T Consensus        14 ~~v~c~~~~l~~iP~~l---~~~l~~L~l~~n~i~~i-~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNL---PETITEIRLEQNTIKVI-PPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG   89 (220)
T ss_dssp             TEEECTTSCCSSCCSSC---CTTCCEEECCSSCCCEE-CTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred             CEEEcCCCCcCcCCCcc---CcCCCEEECCCCcCCCc-CHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence            45666666676666522   15667777777776653 344566666777777777776666666666667777777777


Q ss_pred             CCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCccc
Q 036216           86 NHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSI  165 (695)
Q Consensus        86 n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~  165 (695)
                      |.++...+..|..+++|++|++++|.+++..|..|..+++|++|++++|++++                           
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~---------------------------  142 (220)
T 2v9t_B           90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT---------------------------  142 (220)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC---------------------------
T ss_pred             CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCE---------------------------
Confidence            76665555556666666666666666666656666666666666666665543                           


Q ss_pred             ccccchhcCCCCCCCEEEccCCCcC
Q 036216          166 SGHLTDQLGQFKNLDSLDLSNNSIV  190 (695)
Q Consensus       166 ~~~~~~~l~~l~~L~~L~L~~n~i~  190 (695)
                        ..+..|..+++|++|++++|.+.
T Consensus       143 --~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          143 --IAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             --CCTTTTTTCTTCCEEECCSSCEE
T ss_pred             --ECHHHHhCCCCCCEEEeCCCCcC
Confidence              23344666677777777777664

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.75  E-value=4.4e-18  Score=185.26  Aligned_cols=127  Identities=25%  Similarity=0.311  Sum_probs=71.6

Q ss_pred             hccccceeecccccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEE
Q 036216          358 ETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTL  437 (695)
Q Consensus       358 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  437 (695)
                      .++.|+.|++++|.+... + .+..+++|+.|+|++|.+.+..+  +..+++|+.|+|++|.+.+ ++ .+..+++|+.|
T Consensus        41 ~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L  114 (605)
T 1m9s_A           41 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSL  114 (605)
T ss_dssp             HHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEE
T ss_pred             cCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEE
Confidence            355666666666666532 2 35566666666666666664332  5566666666666666653 22 45556666666


Q ss_pred             EcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCcc
Q 036216          438 DVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSG  495 (695)
Q Consensus       438 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~  495 (695)
                      ++++|.+.+ ++. +. .+++|+.|++++|++++.  ..++.+++|+.|+|++|++++
T Consensus       115 ~Ls~N~l~~-l~~-l~-~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~  167 (605)
T 1m9s_A          115 SLEHNGISD-ING-LV-HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD  167 (605)
T ss_dssp             ECTTSCCCC-CGG-GG-GCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC
T ss_pred             EecCCCCCC-Ccc-cc-CCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC
Confidence            666666532 322 22 455666666666655543  345555566666666665553

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=3.7e-18  Score=185.88  Aligned_cols=190  Identities=24%  Similarity=0.290  Sum_probs=135.2

Q ss_pred             EEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCC
Q 036216            7 ELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFN   86 (695)
Q Consensus         7 ~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n   86 (695)
                      .+.+..+.+..+..  +..+++|+.|++++|.+..  ++ .+..+++|++|+|++|.+.+..+  +..+++|++|+|++|
T Consensus        25 ~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N   97 (605)
T 1m9s_A           25 KDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN   97 (605)
T ss_dssp             HHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC--CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSS
T ss_pred             HHhccCCCcccccc--hhcCCCCCEEECcCCCCCC--Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCC
Confidence            34455555555443  4567778888888888776  44 46778888888888888775444  777888888888888


Q ss_pred             CCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCcccc
Q 036216           87 HFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSIS  166 (695)
Q Consensus        87 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~  166 (695)
                      .+.+ +| .+..+++|++|+|++|.+.+.  ..+..+++|+.|+|++|++.+.  .    .+..+.. |+.|+|++|.+.
T Consensus        98 ~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~----~l~~l~~-L~~L~Ls~N~l~  166 (605)
T 1m9s_A           98 KIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--T----VLSRLTK-LDTLSLEDNQIS  166 (605)
T ss_dssp             CCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--G----GGGSCTT-CSEEECCSSCCC
T ss_pred             CCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--h----hhcccCC-CCEEECcCCcCC
Confidence            7774 33 577788888888888887742  4577788888888888877664  1    3445555 788888888777


Q ss_pred             cccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecC
Q 036216          167 GHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVK  232 (695)
Q Consensus       167 ~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~  232 (695)
                      +..|  +..+++|+.|+|++|.|.              .++  .+..+++|+.|++++|.+.....
T Consensus       167 ~~~~--l~~l~~L~~L~Ls~N~i~--------------~l~--~l~~l~~L~~L~L~~N~l~~~p~  214 (605)
T 1m9s_A          167 DIVP--LAGLTKLQNLYLSKNHIS--------------DLR--ALAGLKNLDVLELFSQECLNKPI  214 (605)
T ss_dssp             CCGG--GTTCTTCCEEECCSSCCC--------------BCG--GGTTCTTCSEEECCSEEEECCCC
T ss_pred             Cchh--hccCCCCCEEECcCCCCC--------------CCh--HHccCCCCCEEEccCCcCcCCcc
Confidence            7655  788888888888888875              332  47778888888888888765433

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.74  E-value=1.4e-17  Score=171.28  Aligned_cols=177  Identities=25%  Similarity=0.192  Sum_probs=139.6

Q ss_pred             CEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCC-CCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEEcc
Q 036216           30 TTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQ-NLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLS  108 (695)
Q Consensus        30 ~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls  108 (695)
                      ++++++++.++.  +|..+.  ..+++|+|++|++++..+..|. ++++|++|+|++|.+++..+..|..+++|++|+|+
T Consensus        21 ~~l~c~~~~l~~--iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLPN--VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCSS--CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcCc--cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            678888888877  676543  4588888888888877777777 88888888888888887777778888888888888


Q ss_pred             cCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCcccccccchhcCCCCCCCEEEccCCC
Q 036216          109 YNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLDLSNNS  188 (695)
Q Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~  188 (695)
                      +|.++...+..|..+++|++|++++|++..                             ..+..|..+++|++|+|++|+
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-----------------------------~~~~~~~~l~~L~~L~L~~N~  147 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVV-----------------------------VDRNAFEDMAQLQKLYLSQNQ  147 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCE-----------------------------ECTTTTTTCTTCCEEECCSSC
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCcccE-----------------------------ECHHHhCCcccCCEEECCCCc
Confidence            888887666677888888888877777653                             345568889999999999999


Q ss_pred             cCCCceEEeeccccccccChhhh---hCCCCCCEEEcccccceeecCCCCCCCCC--ccEEEccCCCCCC
Q 036216          189 IVGPRVLQLYLNKLHGTLSEIHF---ANLTKLSVFLVGANKLTLKVKRDWIPPFQ--LIELGLRSCDVGS  253 (695)
Q Consensus       189 i~~~~~~~l~~~~~~~~l~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~~~~--L~~L~l~~~~~~~  253 (695)
                      ++              .++...|   ..+++|+.|++++|.++......+..++.  ++.|++++|++..
T Consensus       148 l~--------------~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          148 IS--------------RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             CC--------------SCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred             CC--------------eeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence            87              5666566   67999999999999999766666666665  4889999998753

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.74  E-value=4.8e-17  Score=155.43  Aligned_cols=152  Identities=26%  Similarity=0.269  Sum_probs=111.8

Q ss_pred             CcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCC
Q 036216            5 LVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLP   84 (695)
Q Consensus         5 L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~   84 (695)
                      -+.++++++.++.+|...   .++|++|+|++|.+++. .|..+..+++|++|+|++|++....+..|..+++|++|+++
T Consensus        21 ~~~v~c~~~~l~~ip~~~---~~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls   96 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAGI---PTNAQILYLHDNQITKL-EPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG   96 (229)
T ss_dssp             TTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEeEccCCCcCccCCCC---CCCCCEEEcCCCccCcc-CHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence            356777777777777632   26778888888888775 56677777888888888888776666667778888888888


Q ss_pred             CCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCcc
Q 036216           85 FNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSS  164 (695)
Q Consensus        85 ~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~  164 (695)
                      +|.+++..+..|..+++|++|++++|.++ .+|..+..+++|++|++++|++.+                          
T Consensus        97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~--------------------------  149 (229)
T 3e6j_A           97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKS--------------------------  149 (229)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCC--------------------------
T ss_pred             CCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCc--------------------------
Confidence            88877666666777788888888888777 567777777777777777776653                          


Q ss_pred             cccccchhcCCCCCCCEEEccCCCcC
Q 036216          165 ISGHLTDQLGQFKNLDSLDLSNNSIV  190 (695)
Q Consensus       165 ~~~~~~~~l~~l~~L~~L~L~~n~i~  190 (695)
                         ..+..+..+++|+.|++++|.+.
T Consensus       150 ---~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          150 ---IPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             ---CCTTTTTTCTTCCEEECTTSCBC
T ss_pred             ---cCHHHHhCCCCCCEEEeeCCCcc
Confidence               23345677888888888888875

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.73  E-value=2.5e-17  Score=152.64  Aligned_cols=154  Identities=19%  Similarity=0.275  Sum_probs=110.8

Q ss_pred             cEEEcCCCcccccCCccccCCCCCCEEeCCCCcCcccCCh-hhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceE
Q 036216          460 VLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPN-CIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQEL  538 (695)
Q Consensus       460 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~  538 (695)
                      +.+++++|.++ .+|..+.  .+|++|++++|++++..+. .|..+++|                               
T Consensus        11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L-------------------------------   56 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHL-------------------------------   56 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTC-------------------------------
T ss_pred             CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCC-------------------------------
Confidence            45566666664 4454443  2677777777777744443 35555544                               


Q ss_pred             EEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCC
Q 036216          539 VVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIP  618 (695)
Q Consensus       539 ~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p  618 (695)
                                       ++|+|++|++++..|..|..+++|++|+|++|++++..|..|+.+++|+.|+|++|++++..|
T Consensus        57 -----------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  119 (192)
T 1w8a_A           57 -----------------VKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP  119 (192)
T ss_dssp             -----------------CEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECT
T ss_pred             -----------------CEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCH
Confidence                             777888888887778888889999999999999998888888899999999999999998889


Q ss_pred             cCCcCCCCCCEEEcccCcCcccCCCCcccCccccccccCC-cccCCC
Q 036216          619 QSMSSLTFLNHLNLSNNYLTGKIPSSTQLQSFNASCFLGN-NLCGAP  664 (695)
Q Consensus       619 ~~l~~l~~L~~L~ls~N~l~~~iP~~~~~~~~~~~~~~~n-~l~~~~  664 (695)
                      ..+..+++|++|++++|++.+..|.......+....+.++ ..|+.|
T Consensus       120 ~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P  166 (192)
T 1w8a_A          120 GSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP  166 (192)
T ss_dssp             TSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred             HHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence            9999999999999999999887764322222233334444 445544

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.73  E-value=1.1e-17  Score=155.94  Aligned_cols=80  Identities=23%  Similarity=0.368  Sum_probs=53.3

Q ss_pred             cEEEcCCccccccCCccccCCCCCCEEeccCCc-ccccCCccccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEEccc
Q 036216          556 RIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNI-FTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSN  634 (695)
Q Consensus       556 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~  634 (695)
                      ++|++++|++++..|..+..+++|++|++++|+ ++ .+| .++.+++|+.|++++|++++ ++ .+..+++|++|++++
T Consensus       115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~  190 (197)
T 4ezg_A          115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFS  190 (197)
T ss_dssp             CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECB
T ss_pred             CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeC
Confidence            555566666655556666777777777777776 44 555 57777788888888887774 34 677777888888888


Q ss_pred             CcCcc
Q 036216          635 NYLTG  639 (695)
Q Consensus       635 N~l~~  639 (695)
                      |++.+
T Consensus       191 N~i~~  195 (197)
T 4ezg_A          191 QTIGG  195 (197)
T ss_dssp             C----
T ss_pred             cccCC
Confidence            87654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.73  E-value=8.3e-18  Score=170.65  Aligned_cols=284  Identities=12%  Similarity=0.067  Sum_probs=175.3

Q ss_pred             cccceeecccccccccccCccc-cCccceEecccccce--eecCCCCCCCcEEEccCCcCCCccchhhhhhhhh------
Q 036216          288 SQLYLLDLGHNQIHGELTNLTK-ASQLSYLSLIANNFS--GSLPLISSNLTVLELSGNSLSGPIFHFLCYTINE------  358 (695)
Q Consensus       288 ~~L~~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~n~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~------  358 (695)
                      .+++.|.++++--...+..+.. +++|+.|++++|++.  ......++.+..+.+..+.+..       .+|.+      
T Consensus        25 ~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~-------~aF~~~~~~~~   97 (329)
T 3sb4_A           25 NSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPA-------YAFSNVVNGVT   97 (329)
T ss_dssp             HHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECT-------TTTEEEETTEE
T ss_pred             CceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCH-------HHhcccccccc
Confidence            4556666654321112222222 456666666666665  3333333334445554443321       33445      


Q ss_pred             --ccccceeecccccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcc----eeeCCccccCCC
Q 036216          359 --TMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRL----SGTIPILLKNCT  432 (695)
Q Consensus       359 --~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l----~~~~~~~~~~l~  432 (695)
                        +++|+.+.+.+ .++...+.+|.+|++|+++++++|.+....+.+|..+.++..+.......    .......|.++.
T Consensus        98 ~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~  176 (329)
T 3sb4_A           98 KGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE  176 (329)
T ss_dssp             EECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred             cccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence              77888888887 67666667788888888888888887767777787777777776665332    122334566677


Q ss_pred             CCc-EEEcCCCcccccCChhhhh---cCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCcccCChhhhhcccCc
Q 036216          433 SLV-TLDVGENEVFGNIPSWFGE---RFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMA  508 (695)
Q Consensus       433 ~L~-~L~l~~n~~~~~~~~~~~~---~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~  508 (695)
                      .|+ .+.+...   +.++..++.   ...++..+.+.++-...........+++|+.+++++|+++...+.+|.++++| 
T Consensus       177 ~L~~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L-  252 (329)
T 3sb4_A          177 PLETTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYL-  252 (329)
T ss_dssp             CCEEEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTC-
T ss_pred             ccceeEEecCC---CcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCC-
Confidence            776 4555432   223333322   13445555554432111111111236788888888888875555567776666 


Q ss_pred             ccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCC-EEeccCC
Q 036216          509 TVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQ-SLNLSYN  587 (695)
Q Consensus       509 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~-~L~Ls~n  587 (695)
                                                                     +.+++++| ++.+.+..|.++++|+ .+++.+ 
T Consensus       253 -----------------------------------------------~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-  283 (329)
T 3sb4_A          253 -----------------------------------------------LKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-  283 (329)
T ss_dssp             -----------------------------------------------CEEECCTT-CCEECTTTTTTCTTCCEEEEECT-
T ss_pred             -----------------------------------------------CEEECCcc-cceehHHHhhCChhccEEEEEcc-
Confidence                                                           66777776 6666677788888888 888888 


Q ss_pred             cccccCCccccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEEc
Q 036216          588 IFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNL  632 (695)
Q Consensus       588 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l  632 (695)
                      .++...+.+|.++++|+.+++++|.++...+.+|.++++|+.++.
T Consensus       284 ~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          284 SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            677666788888888888888888888777778888888888763

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.71  E-value=1.1e-17  Score=163.45  Aligned_cols=122  Identities=21%  Similarity=0.271  Sum_probs=77.8

Q ss_pred             CcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCC
Q 036216            5 LVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLP   84 (695)
Q Consensus         5 L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~   84 (695)
                      ++.++++++.++.++  .+..+++|++|++++|.++.  ++ .+..+++|++|++++|++++..+  +..+++|++|+++
T Consensus        21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~   93 (263)
T 1xeu_A           21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS--LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred             HHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc--ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence            445566666666665  35666777777777777765  44 46667777777777777764433  6677777777777


Q ss_pred             CCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCcc
Q 036216           85 FNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQ  138 (695)
Q Consensus        85 ~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  138 (695)
                      +|++++. |. +.. ++|++|++++|.+++.  ..+..+++|++|++++|++++
T Consensus        94 ~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~  142 (263)
T 1xeu_A           94 RNRLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKS  142 (263)
T ss_dssp             SSCCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCB
T ss_pred             CCccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCC
Confidence            7777643 32 222 6677777777776642  246666677777776666654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.71  E-value=8.5e-18  Score=164.19  Aligned_cols=171  Identities=22%  Similarity=0.294  Sum_probs=116.6

Q ss_pred             hccccceeecccccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEE
Q 036216          358 ETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTL  437 (695)
Q Consensus       358 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  437 (695)
                      .+.++..++++++.+++..  .+..+++|+.|++++|.++ .++ .+..+++|++|++++|++.+..+  +..+++|+.|
T Consensus        17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L   90 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL   90 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred             HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence            3556777778887777443  4677788888888888887 344 57778888888888888875444  7778888888


Q ss_pred             EcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCc
Q 036216          438 DVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNA  517 (695)
Q Consensus       438 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~  517 (695)
                      ++++|.+.+ +|...  . ++|+.|++++|++++.  ..+..+++|+.|++++|++++. + .+..+++|          
T Consensus        91 ~L~~N~l~~-l~~~~--~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L----------  152 (263)
T 1xeu_A           91 SVNRNRLKN-LNGIP--S-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKL----------  152 (263)
T ss_dssp             ECCSSCCSC-CTTCC--C-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTC----------
T ss_pred             ECCCCccCC-cCccc--c-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCC----------
Confidence            888887743 44322  2 6777777777777753  3577777777777777777632 2 33333333          


Q ss_pred             ccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCccccc
Q 036216          518 IEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGR  592 (695)
Q Consensus       518 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~  592 (695)
                                                            +.|++++|++++.  ..+..+++|+.|++++|.+.+.
T Consensus       153 --------------------------------------~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          153 --------------------------------------EVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             --------------------------------------CEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             --------------------------------------CEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence                                                  6667777777654  4566677777777777776643

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.70  E-value=9.6e-17  Score=148.69  Aligned_cols=133  Identities=23%  Similarity=0.252  Sum_probs=120.7

Q ss_pred             cEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCch-hhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCC
Q 036216            6 VELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPA-WVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLP   84 (695)
Q Consensus         6 ~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~   84 (695)
                      ++++++++.++.+|....   .++++|++++|.++.. .+. .+..+++|++|+|++|.+++..|..|.++++|++|+++
T Consensus        11 ~~l~~s~~~l~~ip~~~~---~~l~~L~l~~n~i~~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIP---LHTTELLLNDNELGRI-SSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC---TTCSEEECCSCCCCSB-CCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEcCCCCcCcCccCCC---CCCCEEECCCCcCCcc-CCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence            789999999999997433   3899999999999884 332 48899999999999999998889999999999999999


Q ss_pred             CCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccch
Q 036216           85 FNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISE  142 (695)
Q Consensus        85 ~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  142 (695)
                      +|++++..+..|..+++|++|++++|.+++..|..+..+++|++|++++|++....+.
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l  144 (192)
T 1w8a_A           87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL  144 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence            9999988888899999999999999999998899999999999999999999876653

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.70  E-value=4.2e-17  Score=165.47  Aligned_cols=102  Identities=22%  Similarity=0.181  Sum_probs=57.6

Q ss_pred             CCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCCCCcc-EEEccCCCCCCC
Q 036216          176 FKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLI-ELGLRSCDVGSR  254 (695)
Q Consensus       176 l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~-~L~l~~~~~~~~  254 (695)
                      +++|+++++++|+++              .|+...|.++++|+.+++..| +......+|..+.+|+ .+.+.+ .+...
T Consensus       225 ~~~L~~l~L~~n~i~--------------~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I  288 (329)
T 3sb4_A          225 MPNLVSLDISKTNAT--------------TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAI  288 (329)
T ss_dssp             CTTCCEEECTTBCCC--------------EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEE
T ss_pred             cCCCeEEECCCCCcc--------------eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEE
Confidence            566666666666654              566666666666666666665 5555555555555555 555554 44444


Q ss_pred             CCccccCCCCCCEEEcccCCCccccChHHhhcccccceee
Q 036216          255 FPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLD  294 (695)
Q Consensus       255 ~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~  294 (695)
                      .+..|..+++|+.++++.+.+. .++...|..+++|+.+.
T Consensus       289 ~~~aF~~c~~L~~l~l~~n~i~-~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          289 EFGAFMGCDNLRYVLATGDKIT-TLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             CTTTTTTCTTEEEEEECSSCCC-EECTTTTCTTCCCCEEE
T ss_pred             chhhhhCCccCCEEEeCCCccC-ccchhhhcCCcchhhhc
Confidence            4445555555555555555554 45554555555555443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.70  E-value=3.6e-19  Score=192.69  Aligned_cols=85  Identities=24%  Similarity=0.300  Sum_probs=50.8

Q ss_pred             cEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccC-CcCCcCCCCCCEEEccc
Q 036216          556 RIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEI-PQSMSSLTFLNHLNLSN  634 (695)
Q Consensus       556 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~ls~  634 (695)
                      +.|+|++|+++ .+|..++.+++|++|+|++|++++ +| .|+.+++|+.|+|++|++++.. |..+..+++|+.|++++
T Consensus       466 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~  542 (567)
T 1dce_A          466 THLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG  542 (567)
T ss_dssp             CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTT
T ss_pred             cEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecC
Confidence            55556666655 555566666666666666666663 44 5566666666666666666544 66666666666666666


Q ss_pred             CcCcccCCC
Q 036216          635 NYLTGKIPS  643 (695)
Q Consensus       635 N~l~~~iP~  643 (695)
                      |++++.+|.
T Consensus       543 N~l~~~~~~  551 (567)
T 1dce_A          543 NSLCQEEGI  551 (567)
T ss_dssp             SGGGGSSSC
T ss_pred             CcCCCCccH
Confidence            666655554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.67  E-value=7.1e-16  Score=142.69  Aligned_cols=130  Identities=27%  Similarity=0.306  Sum_probs=118.8

Q ss_pred             cEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCC
Q 036216            6 VELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPF   85 (695)
Q Consensus         6 ~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~   85 (695)
                      ++++++++.++.+|...   .++|++|++++|.++.  +|..+.++++|++|+|++|.+++..+..|.++++|++|++++
T Consensus        13 ~~l~~~~~~l~~ip~~~---~~~l~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGI---PRDVTELYLDGNQFTL--VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             TEEECTTSCCSSCCSCC---CTTCCEEECCSSCCCS--CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCCCcCCCCC---CCCCCEEECCCCcCch--hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence            67999999999998743   3689999999999986  788999999999999999999988889999999999999999


Q ss_pred             CCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCcccc
Q 036216           86 NHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEI  140 (695)
Q Consensus        86 n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  140 (695)
                      |.+++..|..|..+++|++|++++|.++...+..|..+++|++|++++|++....
T Consensus        88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c  142 (193)
T 2wfh_A           88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDC  142 (193)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred             CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCC
Confidence            9999888889999999999999999999776778999999999999999986543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.66  E-value=2.2e-18  Score=186.52  Aligned_cols=197  Identities=20%  Similarity=0.217  Sum_probs=159.1

Q ss_pred             cCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCc-------------ceeeCCccccCCCCCcEEE-cCCCcccc
Q 036216          381 MSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNR-------------LSGTIPILLKNCTSLVTLD-VGENEVFG  446 (695)
Q Consensus       381 ~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~-------------l~~~~~~~~~~l~~L~~L~-l~~n~~~~  446 (695)
                      ..++.|+.|++++|.+. .+|..++.+++|+.|++++|.             ..+..|..+..+++|+.|+ ++.|.+ .
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~-~  423 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL-D  423 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH-H
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc-c
Confidence            45789999999999998 678899999999999997765             3455667778888888888 566543 2


Q ss_pred             cCChh------hh-hcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCccc
Q 036216          447 NIPSW------FG-ERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIE  519 (695)
Q Consensus       447 ~~~~~------~~-~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~  519 (695)
                      .++..      +. -....|+.|++++|.+++ +|. ++.+++|+.|++++|+++ .+|..+..+++|            
T Consensus       424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L------------  488 (567)
T 1dce_A          424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCL------------  488 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTC------------
T ss_pred             hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCC------------
Confidence            22211      00 012468999999999986 665 999999999999999999 888888877776            


Q ss_pred             ccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccC-Ccccc
Q 036216          520 YSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRI-PETIG  598 (695)
Q Consensus       520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~~~  598 (695)
                                                          +.|+|++|++++ +| .++.+++|++|+|++|++++.. |..|+
T Consensus       489 ------------------------------------~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~  530 (567)
T 1dce_A          489 ------------------------------------EVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLV  530 (567)
T ss_dssp             ------------------------------------CEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGG
T ss_pred             ------------------------------------CEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHh
Confidence                                                889999999996 66 8999999999999999999776 99999


Q ss_pred             CcCCCCEEECCCCcccccCCcC---CcCCCCCCEEEc
Q 036216          599 TMRSLESIDFSVNKFTGEIPQS---MSSLTFLNHLNL  632 (695)
Q Consensus       599 ~l~~L~~L~Ls~n~l~~~~p~~---l~~l~~L~~L~l  632 (695)
                      .+++|+.|+|++|.+++..|..   +..+++|+.||+
T Consensus       531 ~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          531 SCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             GCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             cCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            9999999999999999655432   234789998875

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.66  E-value=4.5e-17  Score=182.05  Aligned_cols=191  Identities=21%  Similarity=0.204  Sum_probs=120.5

Q ss_pred             eecccccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcc
Q 036216          365 LFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEV  444 (695)
Q Consensus       365 L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~  444 (695)
                      +++..|.+. ..+..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|..+++|+.|+|++|.+
T Consensus       206 ~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l  282 (727)
T 4b8c_D          206 DDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRL  282 (727)
T ss_dssp             -----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCC
T ss_pred             cccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcC
Confidence            344445554 56778889999999999999998 67777778999999999999999 7888899999999999999999


Q ss_pred             cccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCC
Q 036216          445 FGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPL  524 (695)
Q Consensus       445 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~  524 (695)
                      . .+|..+. .+++|++|+|++|.++ .+|..|+.+++|++|+|++|++++.+|..+..+....                
T Consensus       283 ~-~lp~~~~-~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~----------------  343 (727)
T 4b8c_D          283 T-SLPAELG-SCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTG----------------  343 (727)
T ss_dssp             S-SCCSSGG-GGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHH----------------
T ss_pred             C-ccChhhc-CCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhh----------------
Confidence            5 8888876 7999999999999997 7788899999999999999999988888876543220                


Q ss_pred             CCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCC--------cccccCCcc
Q 036216          525 NSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYN--------IFTGRIPET  596 (695)
Q Consensus       525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n--------~l~~~~p~~  596 (695)
                                                     ..+++++|.+++.+|.      .|+.|++++|        .+.+..+..
T Consensus       344 -------------------------------~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~  386 (727)
T 4b8c_D          344 -------------------------------LIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHL  386 (727)
T ss_dssp             -------------------------------HHHHHHHCCCCCCCCC------C--------------------------
T ss_pred             -------------------------------hHHhhccCcccCcCcc------ccceeEeecccccccccCCccccccch
Confidence                                           2356778888877775      4455666666        333334444


Q ss_pred             ccCcCCCCEEECCCCccc
Q 036216          597 IGTMRSLESIDFSVNKFT  614 (695)
Q Consensus       597 ~~~l~~L~~L~Ls~n~l~  614 (695)
                      +..+..++...+++|.+.
T Consensus       387 ~~~l~~~~~~~ls~Nil~  404 (727)
T 4b8c_D          387 ATDLAKRTFTVLSYNTLC  404 (727)
T ss_dssp             ---------------CCC
T ss_pred             hhcccccceeeeeccccc
Confidence            455566666667777664

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.64  E-value=7.8e-17  Score=180.15  Aligned_cols=155  Identities=24%  Similarity=0.296  Sum_probs=116.5

Q ss_pred             CCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCCCCCCCchhhhc
Q 036216           18 FPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFD   97 (695)
Q Consensus        18 ~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~   97 (695)
                      +++..|..++.|++|+|++|.+..  +|..++.+++|++|+|++|.++ .+|..|.++++|++|+|++|.++ .+|..|+
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~  290 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSNLQIFN--ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELG  290 (727)
T ss_dssp             -------CCCCCCEEECTTSCCSC--CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGG
T ss_pred             cChhhhccCCCCcEEECCCCCCCC--CChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhc
Confidence            345678888999999999999986  7777889999999999999998 78888999999999999999998 6788899


Q ss_pred             CCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCcccccccchhcCCCC
Q 036216           98 RLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFK  177 (695)
Q Consensus        98 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~  177 (695)
                      .+++|++|+|++|.++ .+|..|+++++|++|+|++|.+.+.+|..+    .........+++++|.+++.+|.      
T Consensus       291 ~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~----~~~~~~~~~l~l~~N~l~~~~p~------  359 (727)
T 4b8c_D          291 SCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKIL----TEKSVTGLIFYLRDNRPEIPLPH------  359 (727)
T ss_dssp             GGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHH----HHHHHHHHHHHHHHCCCCCCCCC------
T ss_pred             CCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHH----hhcchhhhHHhhccCcccCcCcc------
Confidence            9999999999999987 678889999999999999999988877743    22222134577888888887765      


Q ss_pred             CCCEEEccCC
Q 036216          178 NLDSLDLSNN  187 (695)
Q Consensus       178 ~L~~L~L~~n  187 (695)
                      .|+.|+++.|
T Consensus       360 ~l~~l~l~~n  369 (727)
T 4b8c_D          360 ERRFIEINTD  369 (727)
T ss_dssp             C---------
T ss_pred             ccceeEeecc
Confidence            3455666665

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.64  E-value=4.8e-15  Score=135.49  Aligned_cols=134  Identities=25%  Similarity=0.245  Sum_probs=119.1

Q ss_pred             CcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCC
Q 036216            5 LVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLP   84 (695)
Q Consensus         5 L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~   84 (695)
                      .+.++++++.++.+|...   .++|++|++++|.+++. .+..+..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus         9 ~~~l~~~~~~l~~~p~~~---~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGI---PSSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             TTEEECCSSCCSSCCTTC---CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCCccCCCCC---CCCCcEEEeCCCcccEe-CHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence            478999999999998633   37899999999999974 55567899999999999999997777888999999999999


Q ss_pred             CCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccch
Q 036216           85 FNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISE  142 (695)
Q Consensus        85 ~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  142 (695)
                      +|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|++.+..+.
T Consensus        85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  142 (177)
T 2o6r_A           85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  142 (177)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCcc
Confidence            9999988777889999999999999999976666789999999999999999887763

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.64  E-value=4.2e-16  Score=141.26  Aligned_cols=137  Identities=20%  Similarity=0.184  Sum_probs=68.6

Q ss_pred             CCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEE
Q 036216           27 STLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLS  106 (695)
Q Consensus        27 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  106 (695)
                      ++|++|++++|.++...+|..+..+++|++|++++|.++..  ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            45555555555554111444455555555555555555533  4455555555555555555544555555555555555


Q ss_pred             cccCcCCccc-chhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCccccc
Q 036216          107 LSYNSLEGRI-PRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISG  167 (695)
Q Consensus       107 Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~  167 (695)
                      +++|.+++.. +..+..+++|++|++++|++.+..+ .....+..++. |++|++++|.+..
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~-~~~~~~~~l~~-L~~L~l~~n~~~~  161 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND-YRESVFKLLPQ-LTYLDGYDREDQE  161 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTT-HHHHHHTTCSS-CCEETTEETTSCB
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHH-HHHHHHHhCcc-CcEecCCCCChhh
Confidence            5555555321 1455555555555555555544332 00112333333 5555555555443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.63  E-value=6.7e-16  Score=136.78  Aligned_cols=111  Identities=23%  Similarity=0.257  Sum_probs=59.0

Q ss_pred             CCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEE
Q 036216           27 STLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLS  106 (695)
Q Consensus        27 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  106 (695)
                      ++|++|++++|.++...+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            44555555555554111444455555555555555555533  4455555555555555555544555555555555555


Q ss_pred             cccCcCCcc-cchhhcCCCCCCEEEccCCcCccc
Q 036216          107 LSYNSLEGR-IPRSMARLCNLRRLYLGGAKLNQE  139 (695)
Q Consensus       107 Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~  139 (695)
                      +++|.+++. .+..++.+++|++|++++|++++.
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~  128 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNL  128 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGS
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccch
Confidence            555555532 224555555555555555555443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.63  E-value=1.7e-14  Score=149.06  Aligned_cols=267  Identities=10%  Similarity=0.075  Sum_probs=177.7

Q ss_pred             CCCcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEe
Q 036216            3 PSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLG   82 (695)
Q Consensus         3 ~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   82 (695)
                      ..++.+.+.+ .++.|+..+|.++ +|+.+++..+ ++.+ -..+|.+ .+|+.+.+.. .++.+.+.+|.+|++|+.++
T Consensus       113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I-~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~  186 (401)
T 4fdw_A          113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSI-GDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKAD  186 (401)
T ss_dssp             SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEE-CTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred             CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEE-CHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeee
Confidence            4566666654 5788888899886 7999999877 6654 4455656 4799999986 67767788999999999999


Q ss_pred             CCCCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccC
Q 036216           83 LPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALAS  162 (695)
Q Consensus        83 L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~  162 (695)
                      +++|.++.+...+|. +.+|+.+.+..+ ++.+...+|.++++|+.+++..+ +......    .+.. . +|+.+.+ .
T Consensus       187 l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~----aF~~-~-~L~~i~l-p  256 (401)
T 4fdw_A          187 LSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQE----AFRE-S-GITTVKL-P  256 (401)
T ss_dssp             CTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTT----TTTT-C-CCSEEEE-E
T ss_pred             cCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccc----cccc-C-CccEEEe-C
Confidence            999999866666676 689999999854 66677788999999999999875 3333333    2222 2 3788877 4


Q ss_pred             cccccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCCCCcc
Q 036216          163 SSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLI  242 (695)
Q Consensus       163 n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~  242 (695)
                      +.++.+...+|.++++|+.+++.++.+...         -...++...|.+|++|+.+.+. +.++.....+|..+.+|+
T Consensus       257 ~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~---------~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~  326 (401)
T 4fdw_A          257 NGVTNIASRAFYYCPELAEVTTYGSTFNDD---------PEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVT  326 (401)
T ss_dssp             TTCCEECTTTTTTCTTCCEEEEESSCCCCC---------TTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCC
T ss_pred             CCccEEChhHhhCCCCCCEEEeCCccccCC---------cccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCcc
Confidence            456666677788888888888877665210         0113666677777777777777 345655666666666666


Q ss_pred             EEEccCCCCCCCCCccccCCCCCCEEEcccCCCccccChHHhhccc-ccceeecccc
Q 036216          243 ELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSAS-QLYLLDLGHN  298 (695)
Q Consensus       243 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~-~L~~L~l~~n  298 (695)
                      .+.+..+ +.......|..+ +|+.+++.++.+. .++...|..++ .++.+.+..+
T Consensus       327 ~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~-~l~~~~F~~~~~~l~~l~vp~~  380 (401)
T 4fdw_A          327 QLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP-QVFEKVWYGFPDDITVIRVPAE  380 (401)
T ss_dssp             EEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC-BCCCSSCCCSCTTCCEEEECGG
T ss_pred             EEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc-ccccccccCCCCCccEEEeCHH
Confidence            6666433 333334445555 5666666555544 33333333332 3444444443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.63  E-value=2.7e-15  Score=138.75  Aligned_cols=129  Identities=22%  Similarity=0.311  Sum_probs=103.9

Q ss_pred             cEEEcCCCcccccCCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEE
Q 036216          460 VLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELV  539 (695)
Q Consensus       460 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  539 (695)
                      +.+++++|.++ .+|..+.  ++|++|++++|+++ .+|..|..+++|                                
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L--------------------------------   56 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHL--------------------------------   56 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTC--------------------------------
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCC--------------------------------
Confidence            45666666665 4454432  57888888888887 666666666555                                


Q ss_pred             EecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCc
Q 036216          540 VTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQ  619 (695)
Q Consensus       540 ~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~  619 (695)
                                      +.|++++|+|++..+..|.++++|++|+|++|++++..|..|+.+++|+.|+|++|++++..+.
T Consensus        57 ----------------~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~  120 (193)
T 2wfh_A           57 ----------------TLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEG  120 (193)
T ss_dssp             ----------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTT
T ss_pred             ----------------CEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChh
Confidence                            7788888888877778899999999999999999988888899999999999999999976666


Q ss_pred             CCcCCCCCCEEEcccCcCccc
Q 036216          620 SMSSLTFLNHLNLSNNYLTGK  640 (695)
Q Consensus       620 ~l~~l~~L~~L~ls~N~l~~~  640 (695)
                      .|..+++|++|++++|++...
T Consensus       121 ~~~~l~~L~~L~L~~N~~~C~  141 (193)
T 2wfh_A          121 AFNDLSALSHLAIGANPLYCD  141 (193)
T ss_dssp             TTTTCTTCCEEECCSSCEECS
T ss_pred             hhhcCccccEEEeCCCCeecC
Confidence            789999999999999998754

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.63  E-value=5.4e-16  Score=140.50  Aligned_cols=83  Identities=23%  Similarity=0.189  Sum_probs=54.5

Q ss_pred             cEEEcCCccccccCCccccCCCCCCEEeccCCcccccC-CccccCcCCCCEEECCCCcccccCC---cCCcCCCCCCEEE
Q 036216          556 RIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRI-PETIGTMRSLESIDFSVNKFTGEIP---QSMSSLTFLNHLN  631 (695)
Q Consensus       556 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~Ls~n~l~~~~p---~~l~~l~~L~~L~  631 (695)
                      ++|++++|++++.+|..+..+++|++|++++|.+++.. +..++.+++|+.|++++|.+++..+   ..+..+++|++|+
T Consensus        74 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~  153 (168)
T 2ell_A           74 KKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLD  153 (168)
T ss_dssp             CEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEET
T ss_pred             CEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEec
Confidence            56666666666556666666677777777777776321 1566777777777777777774433   3667777777777


Q ss_pred             cccCcCc
Q 036216          632 LSNNYLT  638 (695)
Q Consensus       632 ls~N~l~  638 (695)
                      +++|++.
T Consensus       154 l~~n~~~  160 (168)
T 2ell_A          154 GYDREDQ  160 (168)
T ss_dssp             TEETTSC
T ss_pred             CCCCChh
Confidence            7777665

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.61  E-value=6.5e-16  Score=136.85  Aligned_cols=128  Identities=21%  Similarity=0.205  Sum_probs=78.0

Q ss_pred             CCCCcEEEcCCCccc-ccCCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccc
Q 036216          456 FSRMVLLILRSNNFD-GPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVT  534 (695)
Q Consensus       456 l~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~  534 (695)
                      .++|+.|++++|.++ +.+|..+..+++|++|++++|++++.  ..+..+++                            
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~----------------------------   65 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNK----------------------------   65 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTT----------------------------
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCC----------------------------
Confidence            345666666666665 45555566666666666666666532  22333222                            


Q ss_pred             cceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCccccc-CCccccCcCCCCEEECCCCcc
Q 036216          535 EQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGR-IPETIGTMRSLESIDFSVNKF  613 (695)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~n~l  613 (695)
                                          |++|++++|.+++.+|..+..+++|++|++++|.+++. .|..++.+++|+.|++++|.+
T Consensus        66 --------------------L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l  125 (149)
T 2je0_A           66 --------------------LKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV  125 (149)
T ss_dssp             --------------------CCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGG
T ss_pred             --------------------CCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcc
Confidence                                25666666666655666666667777777777777642 235667777777777777777


Q ss_pred             cccCC---cCCcCCCCCCEEEcc
Q 036216          614 TGEIP---QSMSSLTFLNHLNLS  633 (695)
Q Consensus       614 ~~~~p---~~l~~l~~L~~L~ls  633 (695)
                      ++..+   ..+..+++|++||++
T Consensus       126 ~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A          126 TNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             GGSTTHHHHHHHHCTTCCEETTB
T ss_pred             cchHHHHHHHHHHCCCcccccCC
Confidence            65444   356667777777765

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.60  E-value=4.9e-15  Score=135.39  Aligned_cols=89  Identities=16%  Similarity=0.146  Sum_probs=75.3

Q ss_pred             cEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEEcccC
Q 036216          556 RIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNN  635 (695)
Q Consensus       556 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N  635 (695)
                      ++|++++|++++..+..|..+++|++|++++|++++..+..|+.+++|+.|++++|++++..+..+..+++|++|++++|
T Consensus        55 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N  134 (177)
T 2o6r_A           55 TKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN  134 (177)
T ss_dssp             SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCC
Confidence            67777777777666666788999999999999999777777899999999999999999666666788999999999999


Q ss_pred             cCcccCCCC
Q 036216          636 YLTGKIPSS  644 (695)
Q Consensus       636 ~l~~~iP~~  644 (695)
                      ++.+..|..
T Consensus       135 ~~~~~~~~l  143 (177)
T 2o6r_A          135 PWDCSCPRI  143 (177)
T ss_dssp             CBCCCHHHH
T ss_pred             CeeccCccH
Confidence            999887743

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.60  E-value=2.3e-14  Score=149.09  Aligned_cols=101  Identities=14%  Similarity=0.117  Sum_probs=68.6

Q ss_pred             hhhccccceeecccccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCc
Q 036216          356 INETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLV  435 (695)
Q Consensus       356 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  435 (695)
                      |..+.+|+.+.+..+ ++.....+|.++++|+.+++..+ ++.....+|.+|.+|+.+.+..+ ++.+-..+|.+|.+|+
T Consensus       293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~  369 (394)
T 4fs7_A          293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLK  369 (394)
T ss_dssp             TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCC
T ss_pred             ccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCC
Confidence            335667777777654 44455567888888888888754 55566778888888888888766 6656677888888888


Q ss_pred             EEEcCCCcccccCChhhhhcCCCCcEE
Q 036216          436 TLDVGENEVFGNIPSWFGERFSRMVLL  462 (695)
Q Consensus       436 ~L~l~~n~~~~~~~~~~~~~l~~L~~L  462 (695)
                      .+++..+-  ..+...+ .++++|+.+
T Consensus       370 ~i~lp~~~--~~~~~~F-~~c~~L~~I  393 (394)
T 4fs7_A          370 KVELPKRL--EQYRYDF-EDTTKFKWI  393 (394)
T ss_dssp             EEEEEGGG--GGGGGGB-CTTCEEEEE
T ss_pred             EEEECCCC--EEhhhee-cCCCCCcEE
Confidence            88886542  2233222 356666643

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.58  E-value=1.1e-13  Score=143.20  Aligned_cols=242  Identities=12%  Similarity=0.116  Sum_probs=196.4

Q ss_pred             CCcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeC
Q 036216            4 SLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGL   83 (695)
Q Consensus         4 ~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L   83 (695)
                      +|+.+.+..+ ++.|...+|.++ +|+.+.+.. .+..+ -+.+|.+|++|+.+++++|.++.+...+|. +.+|+.+.+
T Consensus       136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I-~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~l  210 (401)
T 4fdw_A          136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQL-KEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLL  210 (401)
T ss_dssp             CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEE-CSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEEC
T ss_pred             CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEe-hHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEe
Confidence            6888998766 889999999995 699999986 66654 557788999999999999999977777777 689999999


Q ss_pred             CCCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCc
Q 036216           84 PFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASS  163 (695)
Q Consensus        84 ~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n  163 (695)
                      ..+ ++.+...+|.++++|+.+++..+ ++.+...+|.+ .+|+.+.+.. .+......    .+..+.. |+.+.+.++
T Consensus       211 p~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~----aF~~c~~-L~~l~l~~~  281 (401)
T 4fdw_A          211 PVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVTNIASR----AFYYCPE-LAEVTTYGS  281 (401)
T ss_dssp             CTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCCEECTT----TTTTCTT-CCEEEEESS
T ss_pred             CCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-CccEEChh----HhhCCCC-CCEEEeCCc
Confidence            855 77677889999999999999875 56566677777 7899999954 44444343    4555666 999999888


Q ss_pred             ccc-----cccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCC
Q 036216          164 SIS-----GHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPP  238 (695)
Q Consensus       164 ~~~-----~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~  238 (695)
                      .+.     .+...+|.++++|+.+++.. .++              .|+...|.+|++|+.+.+..+ ++.....+|..+
T Consensus       282 ~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~--------------~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~  345 (401)
T 4fdw_A          282 TFNDDPEAMIHPYCLEGCPKLARFEIPE-SIR--------------ILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT  345 (401)
T ss_dssp             CCCCCTTCEECTTTTTTCTTCCEECCCT-TCC--------------EECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS
T ss_pred             cccCCcccEECHHHhhCCccCCeEEeCC-ceE--------------EEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC
Confidence            765     56678899999999999984 464              788889999999999999665 777888899999


Q ss_pred             CCccEEEccCCCCCCCCCccccCCC-CCCEEEcccCCCc
Q 036216          239 FQLIELGLRSCDVGSRFPLWLYSQK-DLQFLDLFNSGIS  276 (695)
Q Consensus       239 ~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~i~  276 (695)
                       +|+.+.+.++......+..|..++ .++.|.+..+.+.
T Consensus       346 -~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          346 -GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             -CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred             -CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence             999999999988777777777774 7889988776543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.56  E-value=7.4e-15  Score=133.99  Aligned_cols=137  Identities=18%  Similarity=0.150  Sum_probs=72.8

Q ss_pred             CCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCCCCCCCchhhhcCCCCC
Q 036216           23 VANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHL  102 (695)
Q Consensus        23 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L  102 (695)
                      +.++.+|++|++++|.++.  +|......++|++|++++|.+++.  ..|..+++|++|++++|.+++..+..|..+++|
T Consensus        15 ~~~~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   90 (176)
T ss_dssp             EECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             cCCcCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence            4455566666666666654  333222223666666666666543  455666666666666666664433444566666


Q ss_pred             CEEEcccCcCCcccch--hhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCcccc
Q 036216          103 EHLSLSYNSLEGRIPR--SMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSIS  166 (695)
Q Consensus       103 ~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~  166 (695)
                      ++|++++|.+. .+|.  .+..+++|++|++++|++... +......+..++. |+.|+++.|...
T Consensus        91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~-~~~~~~~~~~l~~-L~~Ld~~~n~~~  153 (176)
T 1a9n_A           91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNK-KHYRLYVIYKVPQ-VRVLDFQKVKLK  153 (176)
T ss_dssp             CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGS-TTHHHHHHHHCTT-CSEETTEECCHH
T ss_pred             CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCc-HhHHHHHHHHCCc-cceeCCCcCCHH
Confidence            66666666664 3333  555666666666666665432 2211112334444 666666665543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.53  E-value=1.8e-14  Score=131.45  Aligned_cols=129  Identities=20%  Similarity=0.150  Sum_probs=80.3

Q ss_pred             CCCCcEEEcCCCcCCCCCccCCCCCC-CCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCE
Q 036216            2 LPSLVELDLSNCQLHHFPQLPVANFS-TLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKH   80 (695)
Q Consensus         2 l~~L~~L~ls~~~l~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   80 (695)
                      +++|++|++++|.++.++.  +..+. +|++|++++|.+++  + ..+..+++|++|++++|.+++..+..+..+++|++
T Consensus        18 ~~~L~~L~l~~n~l~~i~~--~~~~~~~L~~L~Ls~N~l~~--~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           18 AVRDRELDLRGYKIPVIEN--LGATLDQFDAIDFSDNEIRK--L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   92 (176)
T ss_dssp             TTSCEEEECTTSCCCSCCC--GGGGTTCCSEEECCSSCCCE--E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             cCCceEEEeeCCCCchhHH--hhhcCCCCCEEECCCCCCCc--c-cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence            4566677777776666632  33333 67777777776665  3 45566667777777777766544444566677777


Q ss_pred             EeCCCCCCCCCchh--hhcCCCCCCEEEcccCcCCcccch----hhcCCCCCCEEEccCCcCc
Q 036216           81 LGLPFNHFSSSVPK--WFDRLTHLEHLSLSYNSLEGRIPR----SMARLCNLRRLYLGGAKLN  137 (695)
Q Consensus        81 L~L~~n~l~~~~p~--~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~  137 (695)
                      |++++|.++ .+|.  .+..+++|++|++++|.+. ..|.    .+..+++|++|++++|...
T Consensus        93 L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           93 LILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             EECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             EECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            777777665 3443  5666667777777777666 3344    2666677777776666543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.51  E-value=8.5e-13  Score=137.26  Aligned_cols=60  Identities=5%  Similarity=0.101  Sum_probs=36.1

Q ss_pred             cCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCcCCCCCCEE
Q 036216          568 TLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHL  630 (695)
Q Consensus       568 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  630 (695)
                      +-..+|.++++|+.+++..+ ++.....+|.++++|+.+++..+ +. .+..+|.++++|+.+
T Consensus       334 I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          334 IGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             ECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred             EhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence            33455666677777777655 55455566777777777777644 22 234566666666543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.49  E-value=4.1e-16  Score=145.40  Aligned_cols=129  Identities=21%  Similarity=0.275  Sum_probs=83.9

Q ss_pred             cCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccc
Q 036216          455 RFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVT  534 (695)
Q Consensus       455 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~  534 (695)
                      .+++|++|++++|++++ +| .+..+++|++|++++|+++ .+|..+..+++|                           
T Consensus        46 ~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L---------------------------   95 (198)
T 1ds9_A           46 TLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL---------------------------   95 (198)
T ss_dssp             HTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC---------------------------
T ss_pred             cCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC---------------------------
Confidence            46666666666666664 44 5666677777777777666 455544444443                           


Q ss_pred             cceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCC-ccccCcCCCCEEECCCCcc
Q 036216          535 EQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIP-ETIGTMRSLESIDFSVNKF  613 (695)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~Ls~n~l  613 (695)
                                           +.|++++|++++ +| .+..+++|++|++++|++++..+ ..++.+++|+.|++++|.+
T Consensus        96 ---------------------~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l  152 (198)
T 1ds9_A           96 ---------------------EELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             ---------------------SEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred             ---------------------CEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence                                 667777777764 33 56677777777777777773322 3567777777777777777


Q ss_pred             cccCCcC----------CcCCCCCCEEEcccCcCc
Q 036216          614 TGEIPQS----------MSSLTFLNHLNLSNNYLT  638 (695)
Q Consensus       614 ~~~~p~~----------l~~l~~L~~L~ls~N~l~  638 (695)
                      .+..|..          +..+++|++||  +|+++
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          153 YNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             ccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            7665543          66777777776  56554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.47  E-value=3.4e-13  Score=121.79  Aligned_cols=109  Identities=28%  Similarity=0.292  Sum_probs=74.7

Q ss_pred             CCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEEcc
Q 036216           29 LTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLS  108 (695)
Q Consensus        29 L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls  108 (695)
                      .+++++++|.++.  +|..+  .++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|..+++|++|+++
T Consensus        11 ~~~l~~s~n~l~~--ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           11 GTTVDCSGKSLAS--VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             TTEEECTTSCCSS--CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCcCc--cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            4566667666665  55544  2667777777777776666677777777777777777776666666777777777777


Q ss_pred             cCcCCcccchhhcCCCCCCEEEccCCcCccccc
Q 036216          109 YNSLEGRIPRSMARLCNLRRLYLGGAKLNQEIS  141 (695)
Q Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  141 (695)
                      +|.+++..+..|..+++|++|++++|++....+
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            777776555567777777777777777765543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.47  E-value=2.9e-13  Score=122.23  Aligned_cols=107  Identities=27%  Similarity=0.221  Sum_probs=96.7

Q ss_pred             CcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCC
Q 036216            5 LVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLP   84 (695)
Q Consensus         5 L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~   84 (695)
                      .++++++++.++.+|...   .++|++|+|++|.|++. .|..|.++++|++|+|++|++++..+..|..+++|++|+|+
T Consensus        11 ~~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGI---PTTTQVLYLYDNQITKL-EPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             TTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCcCccCccC---CCCCcEEEcCCCcCCcc-ChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            578999999999998743   38899999999999986 68889999999999999999998888889999999999999


Q ss_pred             CCCCCCCchhhhcCCCCCCEEEcccCcCCcc
Q 036216           85 FNHFSSSVPKWFDRLTHLEHLSLSYNSLEGR  115 (695)
Q Consensus        85 ~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~  115 (695)
                      +|++++..+..|..+++|++|++++|.+...
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            9999987777899999999999999998743

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.45  E-value=5.4e-13  Score=120.85  Aligned_cols=108  Identities=24%  Similarity=0.283  Sum_probs=80.9

Q ss_pred             CEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEEccc
Q 036216           30 TTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSY  109 (695)
Q Consensus        30 ~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~  109 (695)
                      +.+++++|.++.  +|..+.  ++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|.++++|++|++++
T Consensus        15 ~~l~~~~n~l~~--iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           15 TLVNCQNIRLAS--VPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SEEECCSSCCSS--CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             cEEEeCCCCCCc--cCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            677777777765  666553  6778888888888777777788888888888888888766566677788888888888


Q ss_pred             CcCCcccchhhcCCCCCCEEEccCCcCccccc
Q 036216          110 NSLEGRIPRSMARLCNLRRLYLGGAKLNQEIS  141 (695)
Q Consensus       110 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  141 (695)
                      |.+++..+..|..+++|++|++++|++....+
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            88876555567788888888888887765543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.44  E-value=6.1e-13  Score=120.51  Aligned_cols=106  Identities=25%  Similarity=0.228  Sum_probs=93.7

Q ss_pred             CcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCC
Q 036216            5 LVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLP   84 (695)
Q Consensus         5 L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~   84 (695)
                      -+.++++++.++.+|...   .++|++|+|++|.+++. .|..|.++++|++|+|++|++++..+..|.++++|++|+|+
T Consensus        14 ~~~l~~~~n~l~~iP~~~---~~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~   89 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGI---PTDKQRLWLNNNQITKL-EPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN   89 (174)
T ss_dssp             SSEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CcEEEeCCCCCCccCCCc---CCCCcEEEeCCCCcccc-CHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence            368999999999998743   28899999999999986 67888999999999999999997777778999999999999


Q ss_pred             CCCCCCCchhhhcCCCCCCEEEcccCcCCc
Q 036216           85 FNHFSSSVPKWFDRLTHLEHLSLSYNSLEG  114 (695)
Q Consensus        85 ~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~  114 (695)
                      +|++++..+..|..+++|++|++++|.+..
T Consensus        90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             SSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             CCccceeCHHHhccccCCCEEEeCCCCccc
Confidence            999997766679999999999999999883

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.43  E-value=2.7e-15  Score=139.82  Aligned_cols=132  Identities=17%  Similarity=0.184  Sum_probs=82.7

Q ss_pred             cccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCcccCChhhhhccc
Q 036216          427 LLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTA  506 (695)
Q Consensus       427 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~  506 (695)
                      .+..+++|++|++++|.+.+ +| .+. .+++|+.|++++|.++ .+|..+..+++|++|++++|++++ +| .+..+++
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~-~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~  116 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-IS-SLS-GMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVN  116 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-CC-CHH-HHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHH
T ss_pred             HHhcCCCCCEEECCCCCCcc-cc-ccc-cCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCC
Confidence            44455555555555555532 44 222 4555666666666555 345555556677777777777763 33 3444444


Q ss_pred             CcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCccccccCC-ccccCCCCCCEEecc
Q 036216          507 MATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLP-MGLTNLKAVQSLNLS  585 (695)
Q Consensus       507 L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls  585 (695)
                      |                                                +.|++++|++++..+ ..+..+++|++|+++
T Consensus       117 L------------------------------------------------~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~  148 (198)
T 1ds9_A          117 L------------------------------------------------RVLYMSNNKITNWGEIDKLAALDKLEDLLLA  148 (198)
T ss_dssp             S------------------------------------------------SEEEESEEECCCHHHHHHHTTTTTCSEEEEC
T ss_pred             C------------------------------------------------CEEECCCCcCCchhHHHHHhcCCCCCEEEec
Confidence            3                                                677777777774322 467788888999999


Q ss_pred             CCcccccCCcc----------ccCcCCCCEEECCCCccc
Q 036216          586 YNIFTGRIPET----------IGTMRSLESIDFSVNKFT  614 (695)
Q Consensus       586 ~n~l~~~~p~~----------~~~l~~L~~L~Ls~n~l~  614 (695)
                      +|.+.+..|..          +..+++|+.||  +|.++
T Consensus       149 ~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          149 GNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             SCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             CCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            99887666543          78889999887  66665

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.39  E-value=2.1e-14  Score=147.01  Aligned_cols=138  Identities=20%  Similarity=0.183  Sum_probs=66.0

Q ss_pred             CCCCEEEcCCCcCcccCCccC-CCCCCCCEEeCCCCCCCCCchhhh-----cCCCCCCEEEcccCcCCc----ccchhhc
Q 036216           52 SRLHFLNLGYNNFQGPIPEGL-QNLTSLKHLGLPFNHFSSSVPKWF-----DRLTHLEHLSLSYNSLEG----RIPRSMA  121 (695)
Q Consensus        52 ~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~L~~n~l~~~~p~~~-----~~l~~L~~L~Ls~n~l~~----~~~~~~~  121 (695)
                      ++|++|+|++|.+.......+ ..+++|++|+|++|.++......+     ...++|++|+|++|.++.    .++..+.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            455555555555543222222 223455555555555543322222     234555555555555542    1233334


Q ss_pred             CCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCccccccc----chhcCCCCCCCEEEccCCCcC
Q 036216          122 RLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHL----TDQLGQFKNLDSLDLSNNSIV  190 (695)
Q Consensus       122 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~----~~~l~~l~~L~~L~L~~n~i~  190 (695)
                      .+++|++|+|++|.+.+.....+...+..... |++|+|++|.++...    ...+...+.|++|+|++|.|+
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~-L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQ-LQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSC-CCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCC-cCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence            55555555555555544333333333333333 566666665554322    233444566666666666664

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.36  E-value=6.2e-11  Score=123.16  Aligned_cols=128  Identities=13%  Similarity=0.160  Sum_probs=65.8

Q ss_pred             hccccceeecccccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEE
Q 036216          358 ETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTL  437 (695)
Q Consensus       358 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  437 (695)
                      .+..|+.+.+..+... ....+|.++++|+.+.+.. .++.....+|.++.+|+.+.+..+ ++.+-..+|.+|.+|+.+
T Consensus       263 ~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i  339 (394)
T 4gt6_A          263 SCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERI  339 (394)
T ss_dssp             TCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEE
T ss_pred             ecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEE
Confidence            3444444444433222 3334566666666666653 344344556666666666666543 444555666677777777


Q ss_pred             EcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcC
Q 036216          438 DVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNL  493 (695)
Q Consensus       438 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l  493 (695)
                      .+..+ + ..+....+.++++|+.+++.++....   .++..+..|+.+.+..+.+
T Consensus       340 ~ip~s-v-~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          340 AIPSS-V-TKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             EECTT-C-CBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred             EECcc-c-CEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence            76543 3 44555555566677776666654331   3456667777777665543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.29  E-value=5.2e-13  Score=136.62  Aligned_cols=172  Identities=17%  Similarity=0.158  Sum_probs=119.1

Q ss_pred             CCCCCEEEcCCCcCcccCCccC----C-CCCCCCEEeCCCCCCCCCchhhh-cCCCCCCEEEcccCcCCcccchhh----
Q 036216           51 LSRLHFLNLGYNNFQGPIPEGL----Q-NLTSLKHLGLPFNHFSSSVPKWF-DRLTHLEHLSLSYNSLEGRIPRSM----  120 (695)
Q Consensus        51 l~~L~~L~Ls~n~i~~~~~~~~----~-~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~Ls~n~l~~~~~~~~----  120 (695)
                      +++|++|+|++|.++......+    . ..++|++|+|++|.++......+ ..+++|++|+|++|.+.......+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            4678888998888875433333    2 23689999999998875433333 345688999999998875443343    


Q ss_pred             -cCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCccccccc----chhcCCCCCCCEEEccCCCcCCCceE
Q 036216          121 -ARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHL----TDQLGQFKNLDSLDLSNNSIVGPRVL  195 (695)
Q Consensus       121 -~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~----~~~l~~l~~L~~L~L~~n~i~~~~~~  195 (695)
                       ...++|++|++++|.++......+...+..... |++|+|++|.+....    ...+...++|++|+|++|.|++... 
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~-L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~-  228 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTS-VTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA-  228 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSS-CCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH-
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCC-cCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH-
Confidence             346789999999998876555544445555555 999999999887543    5566777889999999998863210 


Q ss_pred             EeeccccccccChhhhhCCCCCCEEEcccccceeecCC
Q 036216          196 QLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKR  233 (695)
Q Consensus       196 ~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~  233 (695)
                              ..+.. .+...+.|+.|++++|.+......
T Consensus       229 --------~~l~~-~L~~~~~L~~L~Ls~N~i~~~g~~  257 (372)
T 3un9_A          229 --------LALAR-AAREHPSLELLHLYFNELSSEGRQ  257 (372)
T ss_dssp             --------HHHHH-HHHHCSSCCEEECTTSSCCHHHHH
T ss_pred             --------HHHHH-HHHhCCCCCEEeccCCCCCHHHHH
Confidence                    02333 567788899999999988765443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.27  E-value=9.3e-10  Score=114.22  Aligned_cols=42  Identities=14%  Similarity=0.135  Sum_probs=19.0

Q ss_pred             CCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcc
Q 036216          569 LPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKF  613 (695)
Q Consensus       569 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l  613 (695)
                      -..+|.++++|+.+++.++....   ..+...++|+.+.+..+.+
T Consensus       349 ~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          349 PESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             CGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred             hHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence            34456666777777776665431   3455666677666665544

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.20  E-value=4.6e-11  Score=121.98  Aligned_cols=106  Identities=24%  Similarity=0.302  Sum_probs=77.3

Q ss_pred             EEECCCC-CCCCCCCchhhcCCCCCCEEEcCC-CcCcccCCccCCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEEcc
Q 036216           31 TLDLSHN-QFDNSFVPAWVFGLSRLHFLNLGY-NNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLS  108 (695)
Q Consensus        31 ~L~Ls~n-~i~~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls  108 (695)
                      .++.+++ .++.  +|. +..+++|++|+|++ |.+++..+..|.++++|++|+|++|++++..|..|.++++|++|+|+
T Consensus        12 ~v~~~~~n~l~~--ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           12 GLRCTRDGALDS--LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             CEECCSSCCCTT--TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             EEEcCCCCCCCc--cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            4577776 6766  666 77777777777775 77776666777778888888888888777777777778888888888


Q ss_pred             cCcCCcccchhhcCCCCCCEEEccCCcCcccc
Q 036216          109 YNSLEGRIPRSMARLCNLRRLYLGGAKLNQEI  140 (695)
Q Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  140 (695)
                      +|++++..+..|..++ |+.|++.+|.+....
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c  119 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPLHCSC  119 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCCCCCG
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCccCCC
Confidence            8887755555555554 888888888776543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.18  E-value=6.2e-11  Score=121.04  Aligned_cols=105  Identities=23%  Similarity=0.238  Sum_probs=88.1

Q ss_pred             cEEEcCCC-cCCCCCccCCCCCCCCCEEECCC-CCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeC
Q 036216            6 VELDLSNC-QLHHFPQLPVANFSTLTTLDLSH-NQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGL   83 (695)
Q Consensus         6 ~~L~ls~~-~l~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L   83 (695)
                      ..++++++ .++.+|.  +..+++|++|+|++ |.++.+ .+..|.++++|++|+|++|++++..|..|.++++|++|+|
T Consensus        11 ~~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l   87 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (347)
T ss_dssp             SCEECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CEEEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCc-ChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence            35788888 8888887  88888999999986 888874 5577888999999999999999888888999999999999


Q ss_pred             CCCCCCCCchhhhcCCCCCCEEEcccCcCCc
Q 036216           84 PFNHFSSSVPKWFDRLTHLEHLSLSYNSLEG  114 (695)
Q Consensus        84 ~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~  114 (695)
                      ++|++++..+..|..+. |++|++++|.+..
T Consensus        88 ~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           88 SFNALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             CSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             CCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            99999876666666665 9999999998873

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.13  E-value=8e-09  Score=106.67  Aligned_cols=72  Identities=11%  Similarity=0.164  Sum_probs=34.5

Q ss_pred             ccccceeecccccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCC
Q 036216          359 TMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCT  432 (695)
Q Consensus       359 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  432 (695)
                      +.+|+.+.+.++.++.....+|.+|.+|+.+.+..+ ++.....+|.+|.+|+.+.+..+ ++.+-..+|.++.
T Consensus       285 c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~  356 (379)
T 4h09_A          285 CSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS  356 (379)
T ss_dssp             CTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred             ccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence            444444444444444333445555555555555433 33334445555555555555433 3334444555543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.98  E-value=5.1e-08  Score=100.57  Aligned_cols=108  Identities=19%  Similarity=0.266  Sum_probs=52.7

Q ss_pred             ccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCC
Q 036216          378 DCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFS  457 (695)
Q Consensus       378 ~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~  457 (695)
                      .++..+.+|+.+.+..+ +.......|.++..|+.+.+..+ ++.+-..+|.++.+|+.+.+..+ + ..++...+..++
T Consensus       211 ~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i-~~i~~~aF~~c~  286 (379)
T 4h09_A          211 YGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-V-KTVPYLLCSGCS  286 (379)
T ss_dssp             TTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-C-SEECTTTTTTCT
T ss_pred             cccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-c-eecccccccccc
Confidence            34445555555555443 22234445555555666555543 33344445555555665555432 2 233333333455


Q ss_pred             CCcEEEcCCCcccccCCccccCCCCCCEEeCC
Q 036216          458 RMVLLILRSNNFDGPLPTELCDLAFLQILDLA  489 (695)
Q Consensus       458 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~  489 (695)
                      +|+.+.+.++.++..-..+|.+|.+|+.+.|.
T Consensus       287 ~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp  318 (379)
T 4h09_A          287 NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP  318 (379)
T ss_dssp             TCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred             ccccccccccccceehhhhhcCCCCCCEEEcC
Confidence            55555555544443334455555555555553

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.80  E-value=4.2e-09  Score=106.58  Aligned_cols=59  Identities=15%  Similarity=0.402  Sum_probs=30.7

Q ss_pred             CCCCCEEeccCCccccc----CCccccCcCCCCEEECCCCcccccCCcCCcC-CCCCCEEEcccCc
Q 036216          576 LKAVQSLNLSYNIFTGR----IPETIGTMRSLESIDFSVNKFTGEIPQSMSS-LTFLNHLNLSNNY  636 (695)
Q Consensus       576 l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~ls~N~  636 (695)
                      +++|++|+|+.|.+.+.    ++..+..+++|+.|++++|.++...-..+.. +  ...++++.++
T Consensus       278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            45566666666655542    2233344566666666666665433333332 2  3456666665

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.75  E-value=4.2e-09  Score=106.55  Aligned_cols=164  Identities=18%  Similarity=0.184  Sum_probs=111.1

Q ss_pred             CCCCCCCCCEEECCCCCCC--------CCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCCCCCCCch
Q 036216           22 PVANFSTLTTLDLSHNQFD--------NSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVP   93 (695)
Q Consensus        22 ~~~~l~~L~~L~Ls~n~i~--------~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~p   93 (695)
                      +...+++|+.|.+......        ...+...+..+++|+.|+|++|.-. .++. +. +++|++|++..|.+.....
T Consensus       134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l  210 (362)
T 2ra8_A          134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVV  210 (362)
T ss_dssp             THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHH
T ss_pred             hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHH
Confidence            4567789999988765321        1114556678899999999988422 2333 43 8999999999988765444


Q ss_pred             hhhc--CCCCCCEEEccc--CcCCcc-----cchhh--cCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccC
Q 036216           94 KWFD--RLTHLEHLSLSY--NSLEGR-----IPRSM--ARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALAS  162 (695)
Q Consensus        94 ~~~~--~l~~L~~L~Ls~--n~l~~~-----~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~  162 (695)
                      ..+.  .+++|++|+|+.  +...+.     +...+  ..+++|++|++.+|.+.+.....+... ..++. |++|+|+.
T Consensus       211 ~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a-~~~~~-L~~LdLs~  288 (362)
T 2ra8_A          211 EDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLES-DILPQ-LETMDISA  288 (362)
T ss_dssp             HHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHC-SSGGG-CSEEECCS
T ss_pred             HHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhC-ccCCC-CCEEECCC
Confidence            4444  789999999864  221111     11222  357899999999999876544322211 23444 99999999


Q ss_pred             cccccccc----hhcCCCCCCCEEEccCCCcC
Q 036216          163 SSISGHLT----DQLGQFKNLDSLDLSNNSIV  190 (695)
Q Consensus       163 n~~~~~~~----~~l~~l~~L~~L~L~~n~i~  190 (695)
                      |.+.+..+    ..+..+++|+.|++++|.|+
T Consensus       289 n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          289 GVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             SCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             CCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            99887543    33456799999999999886

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.59  E-value=4.1e-08  Score=89.49  Aligned_cols=92  Identities=17%  Similarity=0.191  Sum_probs=48.7

Q ss_pred             hcCCCCCCEEEcCCC-cCccc----CCccCCCCCCCCEEeCCCCCCCCC----chhhhcCCCCCCEEEcccCcCCcc---
Q 036216           48 VFGLSRLHFLNLGYN-NFQGP----IPEGLQNLTSLKHLGLPFNHFSSS----VPKWFDRLTHLEHLSLSYNSLEGR---  115 (695)
Q Consensus        48 ~~~l~~L~~L~Ls~n-~i~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~---  115 (695)
                      +...+.|++|+|++| .+...    +...+...++|++|+|++|.+...    +...+...+.|++|+|++|.|...   
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            335566666666666 55421    233445556666666666665532    223344445566666666665532   


Q ss_pred             -cchhhcCCCCCCEEEc--cCCcCccc
Q 036216          116 -IPRSMARLCNLRRLYL--GGAKLNQE  139 (695)
Q Consensus       116 -~~~~~~~l~~L~~L~L--~~n~l~~~  139 (695)
                       +...+...++|++|++  ++|.+...
T Consensus       112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~  138 (185)
T 1io0_A          112 ALVEALQSNTSLIELRIDNQSQPLGNN  138 (185)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHH
T ss_pred             HHHHHHHhCCCceEEEecCCCCCCCHH
Confidence             2344555555666666  55555443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.56  E-value=5.7e-08  Score=88.55  Aligned_cols=121  Identities=11%  Similarity=0.049  Sum_probs=77.9

Q ss_pred             CCccCCCCCCCCEEeCCCC-CCCCC----chhhhcCCCCCCEEEcccCcCCcc----cchhhcCCCCCCEEEccCCcCcc
Q 036216           68 IPEGLQNLTSLKHLGLPFN-HFSSS----VPKWFDRLTHLEHLSLSYNSLEGR----IPRSMARLCNLRRLYLGGAKLNQ  138 (695)
Q Consensus        68 ~~~~~~~l~~L~~L~L~~n-~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~  138 (695)
                      +...+...++|++|+|++| .+...    +...+...++|++|+|++|.+...    +...+...++|++|+|++|.+..
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~  107 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG  107 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence            3455677888888888888 77642    345566678888888888887642    34555666788888888888876


Q ss_pred             ccchhhhhhhcccccccceEEc--cCccccccc----chhcCCCCCCCEEEccCCCc
Q 036216          139 EISEILEIFSGCVSNGLESLAL--ASSSISGHL----TDQLGQFKNLDSLDLSNNSI  189 (695)
Q Consensus       139 ~~~~~~~~~~~~~~~~L~~L~L--~~n~~~~~~----~~~l~~l~~L~~L~L~~n~i  189 (695)
                      .....+...+..... |++|+|  ++|.+....    ...+...+.|++|++++|.+
T Consensus       108 ~g~~~l~~~L~~n~~-L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          108 SGILALVEALQSNTS-LIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHHHHHHHGGGGCSS-CCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHHHHHhCCC-ceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence            554444444444444 666666  556665432    23334445666666666655

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.26  E-value=5.5e-07  Score=86.07  Aligned_cols=67  Identities=24%  Similarity=0.335  Sum_probs=39.6

Q ss_pred             CCCCCCEEeccCCcccc--cCCccccCcCCCCEEECCCCcccccCCcCCcCCC--CCCEEEcccCcCcccCCC
Q 036216          575 NLKAVQSLNLSYNIFTG--RIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLT--FLNHLNLSNNYLTGKIPS  643 (695)
Q Consensus       575 ~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~--~L~~L~ls~N~l~~~iP~  643 (695)
                      ++++|++|+|++|++++  .+|..++.+++|+.|+|++|++++.  ..+..+.  +|++|+|++|++++.+|.
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~  238 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRD  238 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSS
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCc
Confidence            45566666666666664  3345555666666666666666643  2233333  667777777777666663

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.25  E-value=2.6e-07  Score=88.36  Aligned_cols=81  Identities=16%  Similarity=0.167  Sum_probs=66.6

Q ss_pred             hhcccccEEEcCCccccc--cCCccccCCCCCCEEeccCCcccccCCccccCcC--CCCEEECCCCcccccCCc------
Q 036216          550 EILNLVRIIDFSKNLFSG--TLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMR--SLESIDFSVNKFTGEIPQ------  619 (695)
Q Consensus       550 ~~~~~l~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~--~L~~L~Ls~n~l~~~~p~------  619 (695)
                      ..++.|+.|+|++|+|++  .+|..+..+++|+.|+|++|++.+.  +.+..+.  +|+.|+|++|.+.+..|+      
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            457889999999999997  4567778999999999999999854  3455555  999999999999987763      


Q ss_pred             -CCcCCCCCCEEEc
Q 036216          620 -SMSSLTFLNHLNL  632 (695)
Q Consensus       620 -~l~~l~~L~~L~l  632 (695)
                       .+..+++|+.||=
T Consensus       245 ~il~~~P~L~~LDg  258 (267)
T 3rw6_A          245 AIRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHHCTTCCEESS
T ss_pred             HHHHHCcccCeECC
Confidence             3667888888863

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.16  E-value=1.1e-06  Score=77.67  Aligned_cols=86  Identities=9%  Similarity=0.126  Sum_probs=61.6

Q ss_pred             CCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCCC-CCCCchhhhcCC----CCCCEEEcccCc-CCcccchhhcCC
Q 036216           50 GLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNH-FSSSVPKWFDRL----THLEHLSLSYNS-LEGRIPRSMARL  123 (695)
Q Consensus        50 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l----~~L~~L~Ls~n~-l~~~~~~~~~~l  123 (695)
                      .-.+|++||+++|.|+..--..+.++++|++|+|++|. +++.--..+..+    ++|++|++++|. ++..--..+.++
T Consensus        59 ~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~  138 (176)
T 3e4g_A           59 DKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF  138 (176)
T ss_dssp             TCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred             CCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence            34568888888888776555667788888888888885 654333445554    368888888874 775555567788


Q ss_pred             CCCCEEEccCCc
Q 036216          124 CNLRRLYLGGAK  135 (695)
Q Consensus       124 ~~L~~L~L~~n~  135 (695)
                      ++|++|+++++.
T Consensus       139 ~~L~~L~L~~c~  150 (176)
T 3e4g_A          139 RNLKYLFLSDLP  150 (176)
T ss_dssp             TTCCEEEEESCT
T ss_pred             CCCCEEECCCCC
Confidence            888888888875

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.04  E-value=8.8e-07  Score=78.21  Aligned_cols=83  Identities=14%  Similarity=0.097  Sum_probs=68.2

Q ss_pred             cccEEEcCCccccccCCccccCCCCCCEEeccCCc-ccccCCccccCc----CCCCEEECCCCc-ccccCCcCCcCCCCC
Q 036216          554 LVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNI-FTGRIPETIGTM----RSLESIDFSVNK-FTGEIPQSMSSLTFL  627 (695)
Q Consensus       554 ~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~l----~~L~~L~Ls~n~-l~~~~p~~l~~l~~L  627 (695)
                      .|+.||++++.++..--..+.++++|++|+|++|. ++...-..++.+    ++|+.|+|++|. ++..--..++.+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            47999999999987766778899999999999995 765444445554    479999999985 876655677889999


Q ss_pred             CEEEcccCc
Q 036216          628 NHLNLSNNY  636 (695)
Q Consensus       628 ~~L~ls~N~  636 (695)
                      ++|++++|+
T Consensus       142 ~~L~L~~c~  150 (176)
T 3e4g_A          142 KYLFLSDLP  150 (176)
T ss_dssp             CEEEEESCT
T ss_pred             CEEECCCCC
Confidence            999999996

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.55  E-value=9.4e-05  Score=66.58  Aligned_cols=84  Identities=15%  Similarity=0.131  Sum_probs=39.9

Q ss_pred             CCCCCCEEEcCCC-cCcc----cCCccCCCCCCCCEEeCCCCCCCCC----chhhhcCCCCCCEEEcccCcCCcc----c
Q 036216           50 GLSRLHFLNLGYN-NFQG----PIPEGLQNLTSLKHLGLPFNHFSSS----VPKWFDRLTHLEHLSLSYNSLEGR----I  116 (695)
Q Consensus        50 ~l~~L~~L~Ls~n-~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~  116 (695)
                      .-+.|++|+|++| .|..    .+.+++..-+.|++|+|++|.+...    +.+.+..-+.|++|+|+.|.|...    +
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al  118 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL  118 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence            3445666666553 4432    1233444555566666666655432    222333345555555555555431    2


Q ss_pred             chhhcCCCCCCEEEccC
Q 036216          117 PRSMARLCNLRRLYLGG  133 (695)
Q Consensus       117 ~~~~~~l~~L~~L~L~~  133 (695)
                      .+++..-+.|++|+|++
T Consensus       119 a~aL~~N~tL~~L~L~n  135 (197)
T 1pgv_A          119 LRSTLVTQSIVEFKADN  135 (197)
T ss_dssp             HHHTTTTCCCSEEECCC
T ss_pred             HHHHhhCCceeEEECCC
Confidence            23333444455555543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.48  E-value=0.00014  Score=65.52  Aligned_cols=119  Identities=14%  Similarity=0.115  Sum_probs=75.9

Q ss_pred             ccCCCCCCCCEEeCCCC-CCCCC----chhhhcCCCCCCEEEcccCcCCc----ccchhhcCCCCCCEEEccCCcCcccc
Q 036216           70 EGLQNLTSLKHLGLPFN-HFSSS----VPKWFDRLTHLEHLSLSYNSLEG----RIPRSMARLCNLRRLYLGGAKLNQEI  140 (695)
Q Consensus        70 ~~~~~l~~L~~L~L~~n-~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~  140 (695)
                      ..+.+-+.|++|+|++| .+...    +.+++..-+.|+.|+|++|.+..    .+.+.+..-+.|++|+|++|.|....
T Consensus        35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G  114 (197)
T 1pgv_A           35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL  114 (197)
T ss_dssp             HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred             HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence            34456678888888875 66532    34556667788888888888774    33455556678888888888887666


Q ss_pred             chhhhhhhcccccccceEEccCc---ccccc----cchhcCCCCCCCEEEccCCCc
Q 036216          141 SEILEIFSGCVSNGLESLALASS---SISGH----LTDQLGQFKNLDSLDLSNNSI  189 (695)
Q Consensus       141 ~~~~~~~~~~~~~~L~~L~L~~n---~~~~~----~~~~l~~l~~L~~L~L~~n~i  189 (695)
                      ...+...+..... |++|+|+++   .+...    +...+..-+.|++|+++.|.+
T Consensus       115 a~ala~aL~~N~t-L~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          115 LARLLRSTLVTQS-IVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHHHTTTTCC-CSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHHHhhCCc-eeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            5555545544444 777777654   22221    233445556677777766543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.81  E-value=0.0018  Score=54.34  Aligned_cols=56  Identities=18%  Similarity=0.342  Sum_probs=30.1

Q ss_pred             cEEEcCCcccc-ccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcc
Q 036216          556 RIIDFSKNLFS-GTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKF  613 (695)
Q Consensus       556 ~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l  613 (695)
                      ..++.+++.++ ..+|..+.  ++|++|+|++|+|+...++.|..+++|+.|+|++|.+
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            45666666664 24443322  2456666666666544444555555566655555544

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.70  E-value=0.0027  Score=53.23  Aligned_cols=57  Identities=16%  Similarity=0.178  Sum_probs=47.2

Q ss_pred             CEEeccCCccc-ccCCccccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEEcccCcCc
Q 036216          580 QSLNLSYNIFT-GRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLT  638 (695)
Q Consensus       580 ~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~  638 (695)
                      ..++.+++.++ ..+|..+.  ++|+.|+|++|+|+...+..|..+++|++|+|++|++.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            47889999886 35665433  57999999999999766778899999999999999886

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	695
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-20
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	8e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	7e-08
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	2e-06
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.001
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	9e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.004
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	7e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	8e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.002
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	6e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	7e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.001
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.002
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.003
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.004
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	6e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.004
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.001
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.003
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.004

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 89.0 bits (219), Expect = 6e-20
 Identities = 70/284 (24%), Positives = 103/284 (36%), Gaps = 5/284 (1%)

Query: 390 DLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPIL--LKNCTSLVTLDVGENEVFGN 447
           D  N  + G L  +      + +L L    L    PI   L N   L  L +G       
Sbjct: 32  DCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG 91

Query: 448 IPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAM 507
                  + +++  L +   N  G +P  L  +  L  LD + N LSGT+P  I +L   
Sbjct: 92  PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP-N 150

Query: 508 ATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSG 567
                F GN I  + P +        T   +   +          NL             
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLE 210

Query: 568 TLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFL 627
                L                       +G  ++L  +D   N+  G +PQ ++ L FL
Sbjct: 211 GDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270

Query: 628 NHLNLSNNYLTGKIPSSTQLQSFNASCFLGNN-LCGAPLPKNCT 670
           + LN+S N L G+IP    LQ F+ S +  N  LCG+PLP  CT
Sbjct: 271 HSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPA-CT 313

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 61.3 bits (147), Expect = 1e-10
 Identities = 60/274 (21%), Positives = 86/274 (31%), Gaps = 18/274 (6%)

Query: 171 DQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVF-LVGANKLTL 229
           D   Q   +++LDLS  ++  P  +                ANL  L+   + G N L  
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPS------------SLANLPYLNFLYIGGINNLVG 91

Query: 230 KVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQ 289
            +        QL  L +   +V    P +L   K L  LD   + +SGT P  +  S   
Sbjct: 92  PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI-SSLPN 150

Query: 290 LYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNSL-SGPI 348
           L  +    N+I G + +       S L          L                  S  +
Sbjct: 151 LVGITFDGNRISGAIPDSY--GSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNM 208

Query: 349 FHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLS 408
                  +  + K                      +NL  LDL NN+  G LP  L  L 
Sbjct: 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLK 268

Query: 409 SLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGEN 442
            L SL++  N L G IP    N           N
Sbjct: 269 FLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANN 301

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 60.9 bits (146), Expect = 1e-10
 Identities = 59/269 (21%), Positives = 91/269 (33%), Gaps = 50/269 (18%)

Query: 306 NLTKASQLSYLSLIANNFSGSLPLISS--NLTVLELSGNSLSGPIFHFLCYTINETMKLK 363
             T+  +++ L L   N     P+ SS  NL  L          +   +   I +  +L 
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104

Query: 364 FLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGT 423
           +L++    + G +PD     + L+ LD S N  +G LP S+ SL +LV +    NR+SG 
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164

Query: 424 IPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLI-------------------- 463
           IP    + + L T                    +   + +                    
Sbjct: 165 IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQ 224

Query: 464 --------------------------LRSNNFDGPLPTELCDLAFLQILDLADNNLSGTI 497
                                     LR+N   G LP  L  L FL  L+++ NNL G I
Sbjct: 225 KIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284

Query: 498 PNCIHNLTAMATVNPFTGNAIEYSFPLNS 526
           P    NL        +  N      PL +
Sbjct: 285 PQ-GGNLQRFDVSA-YANNKCLCGSPLPA 311

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 54.4 bits (129), Expect = 2e-08
 Identities = 54/283 (19%), Positives = 99/283 (34%), Gaps = 24/283 (8%)

Query: 50  GLSRLHFLNLGYNNFQG--PIPEGLQNLTSLKHLGLPFNH-FSSSVPKWFDRLTHLEHLS 106
              R++ L+L   N     PIP  L NL  L  L +   +     +P    +LT L +L 
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 107 LSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSIS 166
           +++ ++ G IP  ++++  L  L      L+  +   +      V    +      + IS
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD-----GNRIS 162

Query: 167 GHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANK 226
           G + D  G F  L +    +             N+L     +I          F+  +  
Sbjct: 163 GAIPDSYGSFSKLFTSMTISR------------NRLT---GKIPPTFANLNLAFVDLSRN 207

Query: 227 LTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKS 286
           +            +  +    + +  +     +   K+L  LDL N+ I GT P   L  
Sbjct: 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQG-LTQ 266

Query: 287 ASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPL 329
              L+ L++  N + GE+       +    +   N      PL
Sbjct: 267 LKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPL 309

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 50.1 bits (118), Expect = 4e-07
 Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 1/77 (1%)

Query: 36  HNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKW 95
             +   +F    V     L+ L+L  N   G +P+GL  L  L  L + FN+    +P+ 
Sbjct: 228 LAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287

Query: 96  FDRLTHLEHLSLSYNSL 112
              L   +  + + N  
Sbjct: 288 G-NLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 46.7 bits (109), Expect = 5e-06
 Identities = 54/254 (21%), Positives = 86/254 (33%), Gaps = 33/254 (12%)

Query: 5   LVELDLSNCQLHHFPQLP--VANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYN 62
           +  LDLS   L     +P  +AN   L  L +         +P  +  L++LH+L + + 
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 63  NFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMAR 122
           N  G IP+ L  + +L  L   +N  S ++P     L +L  ++   N + G IP S   
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 123 LCNL------------------RRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSS 164
              L                                    +      S+        + +
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 165 ISGHLTDQLGQFKNLDSLDLSNNSIVGP-----------RVLQLYLNKLHGTLSEIHFAN 213
                  ++G  KNL+ LDL NN I G              L +  N L G + +    N
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGN 289

Query: 214 LTKLSVFLVGANKL 227
           L +  V     NK 
Sbjct: 290 LQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 46.3 bits (108), Expect = 6e-06
 Identities = 59/267 (22%), Positives = 103/267 (38%), Gaps = 24/267 (8%)

Query: 98  RLTHLEHLSLSYNSLEGR--IPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGL 155
           +   + +L LS  +L     IP S+A L  L  LY+GG      +   +      ++  L
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGG---INNLVGPIPPAIAKLTQ-L 103

Query: 156 ESLALASSSISGHLTDQLGQFKNLDSLDLSNNSIV-----------GPRVLQLYLNKLHG 204
             L +  +++SG + D L Q K L +LD S N++                +    N++ G
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163

Query: 205 TLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKD 264
            + + + +     +   +  N+LT K+   +           R+   G    L+   +  
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNT 223

Query: 265 LQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGEL-TNLTKASQLSYLSLIANNF 323
            +     NS         L K+ +    LDL +N+I+G L   LT+   L  L++  NN 
Sbjct: 224 QKIHLAKNSLAFDLGKVGLSKNLN---GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280

Query: 324 SGSLPLIS--SNLTVLELSGNS-LSGP 347
            G +P         V   + N  L G 
Sbjct: 281 CGEIPQGGNLQRFDVSAYANNKCLCGS 307

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 82.7 bits (203), Expect = 1e-17
 Identities = 76/393 (19%), Positives = 136/393 (34%), Gaps = 29/393 (7%)

Query: 50  GLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSY 109
            L+      LG  N    + +   +L  +  L        S      + L +L  ++ S 
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQ--TDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSN 75

Query: 110 NSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHL 169
           N L    P  +  L  L  + +   ++              ++     +       +   
Sbjct: 76  NQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133

Query: 170 TDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTL 229
            ++L    N     +S+ S +        L+  +        ANLT L    + +NK++ 
Sbjct: 134 LNRLELSSN----TISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD 189

Query: 230 KVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQ 289
                 +   +   L   +  +    PL + +   L  L L  + +        L S + 
Sbjct: 190 ISVLAKLTNLE--SLIATNNQISDITPLGILTN--LDELSLNGNQLKDIGT---LASLTN 242

Query: 290 LYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIF 349
           L  LDL +NQI   L  L+  ++L+ L L AN  S   PL       L    N       
Sbjct: 243 LTDLDLANNQISN-LAPLSGLTKLTELKLGANQISNISPLAG-----LTALTNLELNENQ 296

Query: 350 HFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSS 409
                 I+    L +L L  N +    P   ++   L  L  +NNK +    +SL +L++
Sbjct: 297 LEDISPISNLKNLTYLTLYFNNISDISPVSSLT--KLQRLFFANNKVSD--VSSLANLTN 352

Query: 410 LVSLHLRKNRLSGTIPILLKNCTSLVTLDVGEN 442
           +  L    N++S   P  L N T +  L + + 
Sbjct: 353 INWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 66.9 bits (162), Expect = 2e-12
 Identities = 61/347 (17%), Positives = 129/347 (37%), Gaps = 34/347 (9%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVP-----AWVFGLSRLHF 56
           L +L +++ SN QL      P+ N + L  + +++NQ  +              L     
Sbjct: 65  LNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQI 122

Query: 57  LNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRI 116
            ++        +     +  ++  +       S     + +++T L+ L+         I
Sbjct: 123 TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDI 182

Query: 117 PRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQF 176
             +     ++         L    ++I +I    +   L+ L+L  + +       L   
Sbjct: 183 SSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD--IGTLASL 240

Query: 177 KNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWI 236
            NL  LDL+NN I                      + LTKL+   +GAN+++       +
Sbjct: 241 TNLTDLDLANNQISNL----------------APLSGLTKLTELKLGANQISNISPLAGL 284

Query: 237 PPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLG 296
                +E      +        + + K+L +L L+ + IS   P   + S ++L  L   
Sbjct: 285 TALTNLE----LNENQLEDISPISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFA 337

Query: 297 HNQIHGELTNLTKASQLSYLSLIANNFSGSLPLIS-SNLTVLELSGN 342
           +N++   +++L   + +++LS   N  S   PL + + +T L L+  
Sbjct: 338 NNKVSD-VSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 63.1 bits (152), Expect = 3e-11
 Identities = 70/392 (17%), Positives = 139/392 (35%), Gaps = 35/392 (8%)

Query: 275 ISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLIS--S 332
           I+  F +  L   ++     LG   +   ++  T   Q++ L         S+  +   +
Sbjct: 12  INQIFTDTAL---AEKMKTVLGKTNVTDTVS-QTDLDQVTTLQADRLGIK-SIDGVEYLN 66

Query: 333 NLTVLELSGNSLSGPI---------FHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSY 383
           NLT +  S N L+               +       +       +   L           
Sbjct: 67  NLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDID 126

Query: 384 QNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENE 443
                 +L+  + + N  + + +LS L SL         T    L N T+L  LD+  N+
Sbjct: 127 PLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK 186

Query: 444 VFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHN 503
                      + + +  LI  +N      P  +     L  L L  N L       + +
Sbjct: 187 ---VSDISVLAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKD--IGTLAS 239

Query: 504 LTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKN 563
           LT +  ++    N I    PL+     G     EL +     ++ + +  L  + +   N
Sbjct: 240 LTNLTDLD-LANNQISNLAPLS-----GLTKLTELKLGANQISNISPLAGLTALTNLELN 293

Query: 564 LFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSS 623
                    ++NLK +  L L +N  +   P  + ++  L+ + F+ NK +     S+++
Sbjct: 294 ENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLAN 349

Query: 624 LTFLNHLNLSNNYLTGKIPSS--TQLQSFNAS 653
           LT +N L+  +N ++   P +  T++     +
Sbjct: 350 LTNINWLSAGHNQISDLTPLANLTRITQLGLN 381

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 59.6 bits (143), Expect = 5e-10
 Identities = 68/360 (18%), Positives = 118/360 (32%), Gaps = 41/360 (11%)

Query: 153 NGLESLALASSSISGHLTDQLGQFKNLDSLDLSNNSIVGP---------RVLQLYLNKLH 203
           + + +L      I     D +    NL  ++ SNN +              + +  N++ 
Sbjct: 44  DQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIA 101

Query: 204 GTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQK 263
                 +  NLT L++F      +        +   +L    +      S          
Sbjct: 102 DITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSF 161

Query: 264 -----------DLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQ 312
                      +L  L+  +   +      +L   + L  L   +NQI   +T L   + 
Sbjct: 162 GNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISD-ITPLGILTN 220

Query: 313 LSYLSLIANNFSGSLPLIS-SNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNI 371
           L  LSL  N       L S +NLT L+L+ N +S          ++   KL  L L  N 
Sbjct: 221 LDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA------PLSGLTKLTELKLGANQ 274

Query: 372 LQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNC 431
           +    P   ++    +      N+      + + +L +L  L L  N +S   P+   + 
Sbjct: 275 ISNISPLAGLTALTNL----ELNENQLEDISPISNLKNLTYLTLYFNNISDISPV--SSL 328

Query: 432 TSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADN 491
           T L  L    N+V     S      + +  L    N      P  L +L  +  L L D 
Sbjct: 329 TKLQRLFFANNKVSD--VSSLA-NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 66.6 bits (161), Expect = 2e-12
 Identities = 54/280 (19%), Positives = 87/280 (31%), Gaps = 32/280 (11%)

Query: 52  SRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNS 111
                L+L  N          +NL +L  L L  N  S   P  F  L  LE L LS N 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 112 LEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTD 171
           L+    +    L  LR         N+       +F+G     +  L       SG    
Sbjct: 91  LKELPEKMPKTLQELRVHE------NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG 144

Query: 172 QLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKV 231
                K L  + +++ +                 ++ I       L+   +  NK+T   
Sbjct: 145 AFQGMKKLSYIRIADTN-----------------ITTIPQGLPPSLTELHLDGNKITKVD 187

Query: 232 KRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLY 291
                    L +LGL    + +     L +   L+ L L N+ +              + 
Sbjct: 188 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGL--ADHKYIQ 245

Query: 292 LLDLGHNQIHG-------ELTNLTKASQLSYLSLIANNFS 324
           ++ L +N I              TK +  S +SL +N   
Sbjct: 246 VVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.8 bits (159), Expect = 3e-12
 Identities = 50/323 (15%), Positives = 83/323 (25%), Gaps = 33/323 (10%)

Query: 12  NCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEG 71
            C      ++P         LDL +N+            L  LH L L  N      P  
Sbjct: 16  QCSDLGLEKVPKDLPPDTALLDLQNNKI-TEIKDGDFKNLKNLHTLILINNKISKISPGA 74

Query: 72  LQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYL 131
              L  L+ L L  N       K    L  L         +   +   + ++  +     
Sbjct: 75  FAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN 134

Query: 132 GGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLDLSNNSIVG 191
                  E              G++ L+    + +   T   G   +L  L L  N I  
Sbjct: 135 PLKSSGIENGAF---------QGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITK 185

Query: 192 PRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDV 251
                                 L  L+   +  N ++            L EL L +  +
Sbjct: 186 V--------------DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 231

Query: 252 GSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKAS 311
             + P  L   K +Q + L N+ IS    N                  +          +
Sbjct: 232 -VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS--------N 282

Query: 312 QLSYLSLIANNFSGSLPLISSNL 334
            + Y  +  + F       +  L
Sbjct: 283 PVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.8 bits (159), Expect = 3e-12
 Identities = 53/271 (19%), Positives = 94/271 (34%), Gaps = 9/271 (3%)

Query: 263 KDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTN-LTKASQLSYLSLIAN 321
            D   LDL N+ I+    +   K+   L+ L L +N+I            +L  L L  N
Sbjct: 31  PDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89

Query: 322 NFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWM 381
                   +   L  L +  N ++              M +  L  +     G     + 
Sbjct: 90  QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQ--MIVVELGTNPLKSSGIENGAFQ 147

Query: 382 SYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGE 441
             + L  + +++   T  +P  L    SL  LHL  N+++      LK   +L  L +  
Sbjct: 148 GMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 204

Query: 442 NEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCI 501
           N +                L +  +NN    +P  L D  ++Q++ L +NN+S    N  
Sbjct: 205 NSISAVDNGSLANTPHLRELHL--NNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDF 262

Query: 502 HNLTAMATVNPFTGNAIEYSFPLNSTIGPGT 532
                      ++G ++  +      I P T
Sbjct: 263 CPPGYNTKKASYSGVSLFSNPVQYWEIQPST 293

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.7 bits (143), Expect = 3e-10
 Identities = 41/273 (15%), Positives = 83/273 (30%), Gaps = 34/273 (12%)

Query: 384 QNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENE 443
            +   LDL NNK T        +L +L +L L  N++S   P        L  L + +N 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN- 89

Query: 444 VFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNL--SGTIPNCI 501
               +     +    +  L +  N       +    L  + +++L  N L  SG      
Sbjct: 90  ---QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 146

Query: 502 HNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFS 561
             +  + +        I                                +   +  +   
Sbjct: 147 QGMKKL-SYIRIADTNITTIPQ--------------------------GLPPSLTELHLD 179

Query: 562 KNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSM 621
            N  +      L  L  +  L LS+N  +     ++     L  +  + NK   ++P  +
Sbjct: 180 GNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGL 238

Query: 622 SSLTFLNHLNLSNNYLTGKIPSSTQLQSFNASC 654
           +   ++  + L NN ++    +      +N   
Sbjct: 239 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKK 271

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.8 bits (133), Expect = 6e-09
 Identities = 47/251 (18%), Positives = 80/251 (31%), Gaps = 19/251 (7%)

Query: 3   PSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYN 62
           P    LDL N ++         N   L TL L +N+  +   P     L +L  L L  N
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI-SKISPGAFAPLVKLERLYLSKN 89

Query: 63  NFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMAR 122
             +    +  + L  L+           SV    +++  +  L  +     G    +   
Sbjct: 90  QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV-ELGTNPLKSSGIENGAFQG 148

Query: 123 LCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSL 182
           +  L  + +    +      +           L  L L  + I+      L    NL  L
Sbjct: 149 MKKLSYIRIADTNITTIPQGLPP--------SLTELHLDGNKITKVDAASLKGLNNLAKL 200

Query: 183 DLSNNSIVG---------PRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKR 233
            LS NSI           P + +L+LN           A+   + V  +  N ++     
Sbjct: 201 GLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSN 260

Query: 234 DWIPPFQLIEL 244
           D+ PP    + 
Sbjct: 261 DFCPPGYNTKK 271

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.9 bits (115), Expect = 1e-06
 Identities = 31/188 (16%), Positives = 55/188 (29%), Gaps = 11/188 (5%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
           L  L  L LS  QL   P+        L   +    +   S           +  L    
Sbjct: 78  LVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVF--NGLNQMIVVELGTNP 135

Query: 62  NNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMA 121
               G      Q +  L ++ +   + ++           L  L L  N +      S+ 
Sbjct: 136 LKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKITKVDAASLK 192

Query: 122 RLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDS 181
            L NL +L L    ++   +  L                 +++    +   L   K +  
Sbjct: 193 GLNNLAKLGLSFNSISAVDNGSLANTPHLRE------LHLNNNKLVKVPGGLADHKYIQV 246

Query: 182 LDLSNNSI 189
           + L NN+I
Sbjct: 247 VYLHNNNI 254

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.3 bits (111), Expect = 3e-06
 Identities = 26/142 (18%), Positives = 50/142 (35%), Gaps = 11/142 (7%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
           +  L  + +++  +     +P     +LT L L  N+       A + GL+ L  L L +
Sbjct: 149 MKKLSYIRIADTNITT---IPQGLPPSLTELHLDGNKI-TKVDAASLKGLNNLAKLGLSF 204

Query: 62  NNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEG------R 115
           N+        L N   L+ L L  N     VP       +++ + L  N++         
Sbjct: 205 NSISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISAIGSNDFC 263

Query: 116 IPRSMARLCNLRRLYLGGAKLN 137
            P    +  +   + L    + 
Sbjct: 264 PPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.5 bits (101), Expect = 6e-05
 Identities = 29/135 (21%), Positives = 49/135 (36%), Gaps = 9/135 (6%)

Query: 1   MLPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLG 60
           + PSL EL L   ++       +   + L  L LS N        +       L  L+L 
Sbjct: 169 LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT-PHLRELHLN 227

Query: 61  YNNFQGPIPEGLQNLTSLKHLGLPFNHFSS------SVPKWFDRLTHLEHLSLSYNSLE- 113
            N     +P GL +   ++ + L  N+ S+        P +  +      +SL  N ++ 
Sbjct: 228 NNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 286

Query: 114 GRIPRSMARLCNLRR 128
             I  S  R   +R 
Sbjct: 287 WEIQPSTFRCVYVRA 301

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.6 bits (91), Expect = 9e-04
 Identities = 16/113 (14%), Positives = 32/113 (28%)

Query: 550 EILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFS 609
           ++     ++D   N  +        NLK + +L L  N  +   P     +  LE +  S
Sbjct: 28  DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 87

Query: 610 VNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSSTQLQSFNASCFLGNNLCG 662
            N+      +   +L  L         +   + +                  G
Sbjct: 88  KNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG 140

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.2 bits (144), Expect = 2e-10
 Identities = 43/188 (22%), Positives = 58/188 (30%), Gaps = 9/188 (4%)

Query: 1   MLPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLG 60
            L  L  L L  C L           + L  L L  N    +        L  L  L L 
Sbjct: 103 GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL-QALPDDTFRDLGNLTHLFLH 161

Query: 61  YNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSM 120
            N          + L SL  L L  N  +   P  F  L  L  L L  N+L      ++
Sbjct: 162 GNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEAL 221

Query: 121 ARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLG--QFKN 178
           A L  L+ L L       +           +   L+    +SS +   L  +L     K 
Sbjct: 222 APLRALQYLRLNDNPWVCDCRARP------LWAWLQKFRGSSSEVPCSLPQRLAGRDLKR 275

Query: 179 LDSLDLSN 186
           L + DL  
Sbjct: 276 LAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (130), Expect = 1e-08
 Identities = 45/255 (17%), Positives = 74/255 (29%), Gaps = 4/255 (1%)

Query: 385 NLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEV 444
               + L  N+ +     S  +  +L  L L  N L+            L  LD+ +N  
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 445 FGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNL 504
             ++         R+  L L         P     LA LQ L L DN L     +   +L
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152

Query: 505 TAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNL 564
             +  +                 +               V       L  +  +    N 
Sbjct: 153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212

Query: 565 FSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSL 624
            S      L  L+A+Q L L+ N +             L+    S ++    +PQ ++  
Sbjct: 213 LSALPTEALAPLRALQYLRLNDNPWVC-DCRARPLWAWLQKFRGSSSEVPCSLPQRLAGR 271

Query: 625 TFLNHLNLSNNYLTG 639
                  L+ N L G
Sbjct: 272 DL---KRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (130), Expect = 1e-08
 Identities = 65/296 (21%), Positives = 90/296 (30%), Gaps = 34/296 (11%)

Query: 12  NCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEG 71
           +C       +PV   +    + L  N+  +    A       L  L L  N         
Sbjct: 17  SCPQQGLQAVPVGIPAASQRIFLHGNRI-SHVPAASFRACRNLTILWLHSNVLARIDAAA 75

Query: 72  LQNLTSLKHLGLPFNHFSSSV-PKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLY 130
              L  L+ L L  N    SV P  F  L  L  L L    L+   P     L  L+ LY
Sbjct: 76  FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY 135

Query: 131 LGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLDLSNNSIV 190
           L    L     +            L  L L  + IS           +LD L L  N   
Sbjct: 136 LQDNALQALPDDTF-----RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR-- 188

Query: 191 GPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLR--- 247
                          +    F +L +L    + AN L+        P   L  L L    
Sbjct: 189 ------------VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236

Query: 248 -SCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHG 302
             CD  +R    L++   LQ     +S +  + P RL    +   L  L  N + G
Sbjct: 237 WVCDCRAR---PLWAW--LQKFRGSSSEVPCSLPQRL----AGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (127), Expect = 2e-08
 Identities = 39/274 (14%), Positives = 86/274 (31%), Gaps = 8/274 (2%)

Query: 379 CWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLD 438
           C    +  +            +P  + +  +   + L  NR+S       + C +L  L 
Sbjct: 6   CVCYNEPKVTTSCPQQGLQ-AVPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILW 62

Query: 439 VGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIP 498
           +  N +     + F        L +  +       P     L  L  L L D      + 
Sbjct: 63  LHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL-DRCGLQELG 121

Query: 499 NCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNL--VR 556
             +    A         NA+  + P ++    G +T   L   +  +        L  + 
Sbjct: 122 PGLFRGLAALQYLYLQDNAL-QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD 180

Query: 557 IIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGE 616
            +   +N  +   P    +L  + +L L  N  +    E +  +R+L+ +  + N +  +
Sbjct: 181 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD 240

Query: 617 IPQSMSSLTFLNHLNLSNNYLTGKIPSSTQLQSF 650
              +     +L     S++ +   +P     +  
Sbjct: 241 CR-ARPLWAWLQKFRGSSSEVPCSLPQRLAGRDL 273

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (123), Expect = 8e-08
 Identities = 57/321 (17%), Positives = 86/321 (26%), Gaps = 49/321 (15%)

Query: 27  STLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFN 86
               T            VP  +   +    + L  N          +   +L  L L  N
Sbjct: 11  EPKVTTSCPQQGL--QAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSN 66

Query: 87  HFSSSVPKWFDRLTHLEHLSLSYNSLEGRI-PRSMARLCNLRRLYLGGAKLNQEISEILE 145
             +      F  L  LE L LS N+    + P +   L  L  L+L     ++   + L 
Sbjct: 67  VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL-----DRCGLQELG 121

Query: 146 IFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGT 205
                    L+ L L  +++     D      NL  L L  N I                
Sbjct: 122 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-------------- 167

Query: 206 LSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLRSCDVGSRFPLWLYSQKDL 265
           + E  F  L  L   L+  N+         + P    +LG           L        
Sbjct: 168 VPERAFRGLHSLDRLLLHQNR------VAHVHPHAFRDLGRLMTLYLFANNLS------- 214

Query: 266 QFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSLIANNFSG 325
                         P   L     L  L L  N    +       + L      ++    
Sbjct: 215 ------------ALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPC 262

Query: 326 SLPLISSNLTVLELSGNSLSG 346
           SLP   +   +  L+ N L G
Sbjct: 263 SLPQRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (117), Expect = 4e-07
 Identities = 38/208 (18%), Positives = 61/208 (29%), Gaps = 5/208 (2%)

Query: 313 LSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNIL 372
              + L  N  S            L +     +              +  +    D   L
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 373 QGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCT 432
           +   P  +     L  L L         P     L++L  L+L+ N L        ++  
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 153

Query: 433 SLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNN 492
           +L  L +  N +       F      +  L+L  N      P    DL  L  L L  NN
Sbjct: 154 NLTHLFLHGNRISSVPERAF-RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212

Query: 493 LSGTIPNCIHNLTAMATV----NPFTGN 516
           LS      +  L A+  +    NP+  +
Sbjct: 213 LSALPTEALAPLRALQYLRLNDNPWVCD 240

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (104), Expect = 2e-05
 Identities = 48/298 (16%), Positives = 76/298 (25%), Gaps = 47/298 (15%)

Query: 176 FKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVG-ANKLTLKVKRD 234
                 + L  N I                +    F     L++  +       +     
Sbjct: 31  PAASQRIFLHGNRISH--------------VPAASFRACRNLTILWLHSNVLARIDAAAF 76

Query: 235 WIPPFQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLD 294
                        +  + S  P   +    L  L L   G+    P      A+ L  L 
Sbjct: 77  TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA-LQYLY 135

Query: 295 LGHNQIHGELTN-LTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLC 353
           L  N +     +       L++L L  N  S         L                   
Sbjct: 136 LQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH------------------ 177

Query: 354 YTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSL 413
                   L  L L +N +    P  +     LM L L  N  +     +L  L +L  L
Sbjct: 178 -------SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYL 230

Query: 414 HLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDG 471
            L  N               L       +EV  ++P    +R +   L  L +N+  G
Sbjct: 231 RLNDNPWVCDCR-ARPLWAWLQKFRGSSSEVPCSLP----QRLAGRDLKRLAANDLQG 283

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 51.0 bits (120), Expect = 7e-08
 Identities = 40/170 (23%), Positives = 64/170 (37%), Gaps = 8/170 (4%)

Query: 330 ISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMAL 389
           I  + T L L+ N L       L         L  L L RN L G  P+ +    ++  L
Sbjct: 27  IPLHTTELLLNDNELGRISSDGLF---GRLPHLVKLELKRNQLTGIEPNAFEGASHIQEL 83

Query: 390 DLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIP 449
            L  NK           L  L +L+L  N++S  +P   ++  SL +L++  N    N  
Sbjct: 84  QLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143

Query: 450 SWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPN 499
             +   + R     L         P+++ D   +QI DL  +    +  N
Sbjct: 144 LAWFAEWLRK--KSLNGGAARCGAPSKVRD---VQIKDLPHSEFKCSSEN 188

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 46.7 bits (109), Expect = 2e-06
 Identities = 34/177 (19%), Positives = 58/177 (32%), Gaps = 9/177 (5%)

Query: 12  NCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEG 71
           +C      ++P       T L L+ N+            L  L  L L  N   G  P  
Sbjct: 14  DCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNA 73

Query: 72  LQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYL 131
            +  + ++ L L  N       K F  L  L+ L+L  N +   +P S   L +L  L L
Sbjct: 74  FEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL 133

Query: 132 GGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLDLSNNS 188
                N              +  L   +L   +       ++   +++   DL ++ 
Sbjct: 134 ASNPFNCNCHLA------WFAEWLRKKSLNGGAARCGAPSKV---RDVQIKDLPHSE 181

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 38.2 bits (87), Expect = 0.001
 Identities = 22/102 (21%), Positives = 31/102 (30%)

Query: 3   PSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYN 62
               EL L++ +L       +                     P    G S +  L LG N
Sbjct: 29  LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88

Query: 63  NFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEH 104
             +    +    L  LK L L  N  S  +P  F+ L  L  
Sbjct: 89  KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTS 130

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 51.4 bits (121), Expect = 2e-07
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 10/79 (12%)

Query: 1   MLPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLG 60
           + PSL EL++SN +L   P    A    L  L  S N    + VP        L  L++ 
Sbjct: 282 LPPSLEELNVSNNKLIELP----ALPPRLERLIASFNHL--AEVPEL---PQNLKQLHVE 332

Query: 61  YNNFQGPIPEGLQNLTSLK 79
           YN  +   P+  +++  L+
Sbjct: 333 YNPLRE-FPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.9 bits (99), Expect = 9e-05
 Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 10/93 (10%)

Query: 10  LSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIP 69
                  +  +       +L  L++S+N+     +PA      RL  L   +N+    +P
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKL--IELPAL---PPRLERLIASFNHLAE-VP 320

Query: 70  EGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHL 102
           E  QN   LK L + +N      P   + +  L
Sbjct: 321 ELPQN---LKQLHVEYNPL-REFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.5 bits (98), Expect = 1e-04
 Identities = 24/108 (22%), Positives = 37/108 (34%), Gaps = 10/108 (9%)

Query: 349 FHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLS 408
                   +   +L       N    ++        +L  L++SNNK    LP     L 
Sbjct: 249 LDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLE 307

Query: 409 SLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEV--FGNIPSWFGE 454
               L    N L+  +P L +N   L  L V  N +  F +IP    +
Sbjct: 308 ---RLIASFNHLA-EVPELPQN---LKQLHVEYNPLREFPDIPESVED 348

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.7 bits (96), Expect = 2e-04
 Identities = 49/337 (14%), Positives = 94/337 (27%), Gaps = 23/337 (6%)

Query: 4   SLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNN 63
              EL+L+N  L   P+LP      L +L  S N    + +P        L  L +  NN
Sbjct: 39  QAHELELNNLGLSSLPELP----PHLESLVASCNSL--TELPEL---PQSLKSLLVDNNN 89

Query: 64  FQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARL 123
            +      L +L  L       N+    +P+  +          + +  +          
Sbjct: 90  LK-----ALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEF 144

Query: 124 CNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLD 183
                  L      Q +  +  I++   S         S        + L +   L +L 
Sbjct: 145 IAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLP 204

Query: 184 LSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIE 243
                     +L+   +      +     N       L  +       +  +    +L  
Sbjct: 205 FLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPP 264

Query: 244 LGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGE 303
                    +           L+ L++ N+ +       L     +L  L    N +  E
Sbjct: 265 NLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-----ELPALPPRLERLIASFNHL-AE 318

Query: 304 LTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLELS 340
           +  L     L  L +  N      P I  ++  L ++
Sbjct: 319 VPELP--QNLKQLHVEYNPLR-EFPDIPESVEDLRMN 352

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.8 bits (91), Expect = 7e-04
 Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 10/87 (11%)

Query: 560 FSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQ 619
           +  N  S  +        +++ LN+S N     +P        LE +  S N    E+P+
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHLA-EVPE 321

Query: 620 SMSSLTFLNHLNLSNNYLTG--KIPSS 644
              +L     L++  N L     IP S
Sbjct: 322 LPQNLK---QLHVEYNPLREFPDIPES 345

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.4 bits (90), Expect = 0.001
 Identities = 50/323 (15%), Positives = 89/323 (27%), Gaps = 15/323 (4%)

Query: 311 SQLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSG--PIFHFLCYTINETMKLKFLFLD 368
            Q   L L     S SLP +  +L  L  S NSL+    +   L   + +   LK L   
Sbjct: 38  RQAHELELNNLGLS-SLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDL 96

Query: 369 RNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILL 428
             +L+          +     + S  K       SL  L  L          +  +  L 
Sbjct: 97  PPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELP 156

Query: 429 KNCT-SLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILD 487
           +      +T    +N     +P       S +    +     +      L  +     L 
Sbjct: 157 ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLL 216

Query: 488 LADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAAD 547
               +L  ++         +  +     +        N   G   +      +       
Sbjct: 217 KTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEI 276

Query: 548 YNEILNL--VRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLES 605
            +       +  ++ S N     LP     L   + L  S+N     +PE      +L+ 
Sbjct: 277 RSLCDLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNHLA-EVPELPQ---NLKQ 328

Query: 606 IDFSVNKFTGEIPQSMSSLTFLN 628
           +    N    E P    S+  L 
Sbjct: 329 LHVEYNPLR-EFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.5 bits (85), Expect = 0.004
 Identities = 21/90 (23%), Positives = 31/90 (34%), Gaps = 8/90 (8%)

Query: 583 NLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIP 642
               N  +  I        SLE ++ S NK   E+P     L     L  S N+L     
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLE---RLIASFNHLAEVPE 321

Query: 643 SSTQLQSFNASCFLGNNLCGAP-LPKNCTD 671
               L+  +      N L   P +P++  D
Sbjct: 322 LPQNLKQLHVE---YNPLREFPDIPESVED 348

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (119), Expect = 4e-07
 Identities = 13/91 (14%), Positives = 26/91 (28%), Gaps = 9/91 (9%)

Query: 29  LTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQG----PIPEGLQNLTSLKHLGLP 84
           + +LD+   +  ++     +  L +   + L            I   L+   +L  L L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 85  FNHFSSSVPKWF-----DRLTHLEHLSLSYN 110
            N                    ++ LSL   
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (105), Expect = 2e-05
 Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 5/71 (7%)

Query: 579 VQSLNLSYNIFT-GRIPETIGTMRSLESIDFSVNKFTGE----IPQSMSSLTFLNHLNLS 633
           +QSL++     +  R  E +  ++  + +       T      I  ++     L  LNL 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 634 NNYLTGKIPSS 644
           +N L       
Sbjct: 64  SNELGDVGVHC 74

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 6e-05
 Identities = 15/97 (15%), Positives = 22/97 (22%), Gaps = 9/97 (9%)

Query: 36  HNQFDNSFVPAWVFGLSRLHFLNLGYNNFQG----PIPEGLQNLTSLKHLGLPFNHFSSS 91
            +              S L  L L   +        +   L    SL+ L L  N    +
Sbjct: 353 EDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 412

Query: 92  VPKWF-----DRLTHLEHLSLSYNSLEGRIPRSMARL 123
                          LE L L        +   +  L
Sbjct: 413 GILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 8e-05
 Identities = 21/105 (20%), Positives = 30/105 (28%), Gaps = 14/105 (13%)

Query: 16  HHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSR---LHFLNLGYNNFQGPIPEGL 72
               Q      S L  L L+     +S   +    L     L  L+L  N         L
Sbjct: 358 RELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQL 417

Query: 73  -----QNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSL 112
                Q    L+ L L   ++S  +         L+ L     SL
Sbjct: 418 VESVRQPGCLLEQLVLYDIYWSEEMEDR------LQALEKDKPSL 456

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 1e-04
 Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 8/81 (9%)

Query: 3   PSLVELDLSNCQLHHFPQLPVA----NFSTLTTLDLSHNQFDNSFVPAWVFGL----SRL 54
             L  L L++C +       +A       +L  LDLS+N   ++ +   V  +      L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 55  HFLNLGYNNFQGPIPEGLQNL 75
             L L    +   + + LQ L
Sbjct: 429 EQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (98), Expect = 1e-04
 Identities = 15/96 (15%), Positives = 31/96 (32%), Gaps = 7/96 (7%)

Query: 331 SSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGK----LPDCWMSYQNL 386
           S ++  L++    LS   +  L   +    + + + LD   L       +         L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQ---QCQVVRLDDCGLTEARCKDISSALRVNPAL 57

Query: 387 MALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSG 422
             L+L +N+        +       S  ++K  L  
Sbjct: 58  AELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (95), Expect = 3e-04
 Identities = 19/83 (22%), Positives = 29/83 (34%), Gaps = 9/83 (10%)

Query: 72  LQNLTSLKHLGLPFNHFS----SSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMAR----- 122
            Q  + L+ L L     S    SS+         L  L LS N L       +       
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424

Query: 123 LCNLRRLYLGGAKLNQEISEILE 145
            C L +L L     ++E+ + L+
Sbjct: 425 GCLLEQLVLYDIYWSEEMEDRLQ 447

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 4e-04
 Identities = 15/124 (12%), Positives = 29/124 (23%), Gaps = 30/124 (24%)

Query: 385 NLMALDLSNNKFTGN-LPTSLGSLSSLVSLHLRKNRLSG----TIPILLKNCTSLVTLDV 439
           ++ +LD+   + +       L  L     + L    L+      I   L+   +L  L+ 
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN- 61

Query: 440 GENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPN 499
                                   LRSN         +          +   +L      
Sbjct: 62  ------------------------LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 97

Query: 500 CIHN 503
               
Sbjct: 98  GAGC 101

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 6e-04
 Identities = 12/93 (12%), Positives = 25/93 (26%), Gaps = 6/93 (6%)

Query: 552 LNLVRIIDFSKNLFSGT-LPMGLTNLKAVQSLNLSYNIFTGR----IPETIGTMRSLESI 606
           L++ + +D      S       L  L+  Q + L     T      I   +    +L  +
Sbjct: 2   LDI-QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 607 DFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTG 639
           +   N+        +          +    L  
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 6e-04
 Identities = 12/79 (15%), Positives = 24/79 (30%), Gaps = 9/79 (11%)

Query: 575 NLKAVQSLNLSYNIFTGR----IPETIGTMRSLESIDFSVNKFTGEIPQSMSS-----LT 625
               ++ L L+    +      +  T+    SL  +D S N         +         
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 626 FLNHLNLSNNYLTGKIPSS 644
            L  L L + Y + ++   
Sbjct: 427 LLEQLVLYDIYWSEEMEDR 445

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (88), Expect = 0.002
 Identities = 13/103 (12%), Positives = 26/103 (25%), Gaps = 11/103 (10%)

Query: 4   SLVELDLSNCQL--HHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGL---SRLHFLN 58
            +  LD+   +L    + +L +        + L       +        L     L  LN
Sbjct: 3   DIQSLDIQCEELSDARWAEL-LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 59  LGYNNFQGPIPEGL-----QNLTSLKHLGLPFNHFSSSVPKWF 96
           L  N         +          ++ L L     + +     
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL 104

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 7e-07
 Identities = 27/267 (10%), Positives = 75/267 (28%), Gaps = 15/267 (5%)

Query: 389 LDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNI 448
           LDL+      ++   L S   +++    ++ +   +         +  +D+  + +  + 
Sbjct: 5   LDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFS-PFRVQHMDLSNSVIEVST 62

Query: 449 PSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMA 508
                 + S++  L L       P+   L   + L  L+L+  +            +   
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122

Query: 509 TVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKN----- 563
                     +++                 +   G   +  +      +           
Sbjct: 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 182

Query: 564 ----LFSGTLPMGLTNLKAVQSLNLSY-NIFTGRIPETIGTMRSLESIDFSVNKFTGEIP 618
               +           L  +Q L+LS            +G + +L+++        G + 
Sbjct: 183 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQ 242

Query: 619 QSMSSLTFLNHLNLSNNYLTGKIPSST 645
               +L    HL ++ ++ T     + 
Sbjct: 243 LLKEALP---HLQINCSHFTTIARPTI 266

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (99), Expect = 8e-05
 Identities = 32/198 (16%), Positives = 62/198 (31%), Gaps = 7/198 (3%)

Query: 4   SLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNN 63
            ++        +   P     +   +  +DLS++  + S +   +   S+L  L+L    
Sbjct: 24  GVIAFRCPRSFMDQ-PLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR 82

Query: 64  FQGPIPEGLQNLTSLKHLGLPFNHF-----SSSVPKWFDRLTHLEHLSLSYNSLEGRIPR 118
              PI   L   ++L  L L            ++     RL  L        + +     
Sbjct: 83  LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA 142

Query: 119 SMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKN 178
                  + +L L G + N + S++  +   C +         S  +      +  Q   
Sbjct: 143 VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV-HLDLSDSVMLKNDCFQEFFQLNY 201

Query: 179 LDSLDLSNNSIVGPRVLQ 196
           L  L LS    + P  L 
Sbjct: 202 LQHLSLSRCYDIIPETLL 219

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 6e-04
 Identities = 39/264 (14%), Positives = 81/264 (30%), Gaps = 26/264 (9%)

Query: 181 SLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQ 240
           +LDL+  ++      +L    +                +          +   +   PF+
Sbjct: 4   TLDLTGKNLHPDVTGRLLSQGV----------------IAFRCPRSFMDQPLAEHFSPFR 47

Query: 241 LIELGLRSCDVGSRFPLWLYSQ-KDLQFLDLFNSGISGTFPNRLLKSASQLYL------- 292
           +  + L +  +       + SQ   LQ L L    +S    N L K+++ + L       
Sbjct: 48  VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSG 107

Query: 293 -LDLGHNQIHGELTNLTKASQLSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHF 351
             +     +    + L + +          +   ++  +S  +T L LSG   +      
Sbjct: 108 FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDL 167

Query: 352 LCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSN-NKFTGNLPTSLGSLSSL 410
                     +     D  +L+      +     L  L LS            LG + +L
Sbjct: 168 STLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTL 227

Query: 411 VSLHLRKNRLSGTIPILLKNCTSL 434
            +L +      GT+ +L +    L
Sbjct: 228 KTLQVFGIVPDGTLQLLKEALPHL 251

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.1 bits (106), Expect = 2e-06
 Identities = 27/120 (22%), Positives = 39/120 (32%), Gaps = 8/120 (6%)

Query: 389 LDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNI 448
           L L++   T      L  L  +  L L  NRL    P L     +L  L+V +       
Sbjct: 3   LHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPPAL----AALRCLEVLQASDNALE 56

Query: 449 PSWFGERFSRMVLLILRSNNF-DGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAM 507
                    R+  L+L +N          L     L +L+L  N+L          L  M
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLAEM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.7 bits (105), Expect = 3e-06
 Identities = 32/126 (25%), Positives = 49/126 (38%), Gaps = 10/126 (7%)

Query: 8   LDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGP 67
           L L++  L     L       +T LDLSHN+     +P  +  L  L  L    ++    
Sbjct: 3   LHLAHKDLTVLCHL--EQLLLVTHLDLSHNRL--RALPPALAALRCLEVLQ--ASDNALE 56

Query: 68  IPEGLQNLTSLKHLGLPFNHFSS-SVPKWFDRLTHLEHLSLSYNSL---EGRIPRSMARL 123
             +G+ NL  L+ L L  N     +  +       L  L+L  NSL   EG   R    L
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116

Query: 124 CNLRRL 129
            ++  +
Sbjct: 117 PSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.1 bits (93), Expect = 1e-04
 Identities = 25/119 (21%), Positives = 38/119 (31%), Gaps = 7/119 (5%)

Query: 31  TLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSS 90
            L L+H           +  L  +  L+L +N  +   P  L  L  L+ L    N   +
Sbjct: 2   VLHLAHKDLTV---LCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALEN 57

Query: 91  SVPKWFDRLTHLEHLSLSYNSLEG-RIPRSMARLCNLRRLYLGGAKLNQEISEILEIFS 148
                      L+ L L  N L+     + +     L  L L G  L QE      +  
Sbjct: 58  VDGVANLP--RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 114

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.9 bits (90), Expect = 3e-04
 Identities = 23/108 (21%), Positives = 36/108 (33%), Gaps = 8/108 (7%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
           L  +  LDLS+ +L   P       + L  L++     +       V  L RL  L L  
Sbjct: 19  LLLVTHLDLSHNRLRALPP----ALAALRCLEVLQASDNALENVDGVANLPRLQELLLCN 74

Query: 62  NNFQG-PIPEGLQNLTSLKHLGLPFNHFS---SSVPKWFDRLTHLEHL 105
           N  Q     + L +   L  L L  N          +  + L  +  +
Sbjct: 75  NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.2 bits (88), Expect = 5e-04
 Identities = 28/130 (21%), Positives = 45/130 (34%), Gaps = 15/130 (11%)

Query: 315 YLSLIANNFSGSLPLIS-SNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQ 373
            L L   + +    L     +T L+LS N L             E ++     L+     
Sbjct: 2   VLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN---- 57

Query: 374 GKLPDCWMSYQNLMALDLSNNKFTG-NLPTSLGSLSSLVSLHLRKNRLSG------TIPI 426
               D   +   L  L L NN+         L S   LV L+L+ N L         +  
Sbjct: 58  ---VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 114

Query: 427 LLKNCTSLVT 436
           +L + +S++T
Sbjct: 115 MLPSVSSILT 124

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.6 bits (84), Expect = 0.002
 Identities = 27/132 (20%), Positives = 49/132 (37%), Gaps = 11/132 (8%)

Query: 79  KHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQ 138
           + L L     +       ++L  + HL LS+N L    P ++A L  L         L  
Sbjct: 1   RVLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEV-------LQA 50

Query: 139 EISEILEIFSGCVSNGLESLALASSSI-SGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQL 197
             + +  +        L+ L L ++ +        L     L  L+L  NS+     +Q 
Sbjct: 51  SDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE 110

Query: 198 YLNKLHGTLSEI 209
            L ++  ++S I
Sbjct: 111 RLAEMLPSVSSI 122

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (100), Expect = 2e-05
 Identities = 25/132 (18%), Positives = 38/132 (28%), Gaps = 8/132 (6%)

Query: 2   LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGY 61
                ELDL   ++     L  A       +D S N+            L RL  L +  
Sbjct: 17  AVRDRELDLRGYKIPVIENLG-ATLDQFDAIDFSDNEIRK---LDGFPLLRRLKTLLVNN 72

Query: 62  NNFQGPIPEGLQNLTSLKHLGLPFNHFSS-SVPKWFDRLTHLEHLSLS---YNSLEGRIP 117
           N          Q L  L  L L  N             L  L +L +      + +    
Sbjct: 73  NRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRL 132

Query: 118 RSMARLCNLRRL 129
             + ++  +R L
Sbjct: 133 YVIYKVPQVRVL 144

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 6e-04
 Identities = 24/127 (18%), Positives = 39/127 (30%), Gaps = 5/127 (3%)

Query: 25  NFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLP 84
           N      LDL   +     +      L +   ++   N  +    +G   L  LK L + 
Sbjct: 16  NAVRDRELDLRGYKI--PVIENLGATLDQFDAIDFSDNEIR--KLDGFPLLRRLKTLLVN 71

Query: 85  FNHFSSSVPKWFDRLTHLEHLSLSYNSLEG-RIPRSMARLCNLRRLYLGGAKLNQEISEI 143
            N            L  L  L L+ NSL        +A L +L  L +    +  +    
Sbjct: 72  NNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYR 131

Query: 144 LEIFSGC 150
           L +    
Sbjct: 132 LYVIYKV 138

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (99), Expect = 7e-05
 Identities = 40/208 (19%), Positives = 63/208 (30%), Gaps = 33/208 (15%)

Query: 2   LPSLVELDLSNCQLHHFPQ-LPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNL- 59
           + S +E++     L   P  LP       T L LS N    +F  A +   +RL  LNL 
Sbjct: 9   VASHLEVNCDKRNLTALPPDLP----KDTTILHLSENLL-YTFSLATLMPYTRLTQLNLD 63

Query: 60  GYNNFQGPIPEGLQNLTSLKHLGLPF--------------------NHFSSSVPKWFDRL 99
                +  +   L  L +L                           N  +S        L
Sbjct: 64  RAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123

Query: 100 THLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLA 159
             L+ L L  N L+   P  +       +L       N        + +G  +  L++L 
Sbjct: 124 GELQELYLKGNELKTLPPGLL---TPTPKLEKLSLANNNLTELPAGLLNGLEN--LDTLL 178

Query: 160 LASSSISGHLTDQLGQFKNLDSLDLSNN 187
           L  +S+   +         L    L  N
Sbjct: 179 LQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 2e-04
 Identities = 36/238 (15%), Positives = 61/238 (25%), Gaps = 33/238 (13%)

Query: 377 PDCWMS-YQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLV 435
           P C +S   + + ++      T  LP  L        LHL +N L       L   T L 
Sbjct: 2   PICEVSKVASHLEVNCDKRNLT-ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLT 58

Query: 436 TLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSG 495
            L++   E+               VL  L  ++        L        +     N   
Sbjct: 59  QLNLDRAELTKLQVDGT-----LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT 113

Query: 496 TIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLV 555
           ++P                GN ++   P                               +
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPP-----------------------GLLTPTPKL 150

Query: 556 RIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKF 613
             +  + N  +      L  L+ + +L L  N     IP+       L       N +
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 34/177 (19%), Positives = 53/177 (29%), Gaps = 4/177 (2%)

Query: 483 LQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTK 542
             IL L++N L       +   T +  +N    +  E +        P   T        
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNL---DRAELTKLQVDGTLPVLGTLDLSHNQL 89

Query: 543 GVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRS 602
                  + L  + ++D S N  +      L  L  +Q L L  N      P  +     
Sbjct: 90  QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149

Query: 603 LESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSSTQLQSFNASCFLGNN 659
           LE +  + N  T      ++ L  L+ L L  N L                 FL  N
Sbjct: 150 LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLP-FAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 18/77 (23%), Positives = 25/77 (32%), Gaps = 1/77 (1%)

Query: 36  HNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKW 95
                 +  P  +    +L  L+L  NN        L  L +L  L L  N   + +PK 
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKG 190

Query: 96  FDRLTHLEHLSLSYNSL 112
           F     L    L  N  
Sbjct: 191 FFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 0.003
 Identities = 37/181 (20%), Positives = 54/181 (29%), Gaps = 19/181 (10%)

Query: 330 ISSNLTVLELSGNSLSGPIFHFL---------------CYTINETMKLKFLFLDRNILQG 374
           +  + T+L LS N L       L                  +     L  L         
Sbjct: 29  LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQ 88

Query: 375 K--LPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCT 432
              LP    +   L  LD+S N+ T     +L  L  L  L+L+ N L    P LL    
Sbjct: 89  LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP 148

Query: 433 SLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNN 492
            L  L +  N +              +  L+L+ N+    +P        L    L  N 
Sbjct: 149 KLEKLSLANNNLTELPAGLLN-GLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNP 206

Query: 493 L 493
            
Sbjct: 207 W 207

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 4e-04
 Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 4/91 (4%)

Query: 349 FHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLS 408
            + +             +L     Q        +   L  L   +NK +   P  L SL 
Sbjct: 138 LNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLP 195

Query: 409 SLVSLHLRKNRLSGTIPILLKNCTSLVTLDV 439
           +L+ +HL+ N++S   P  L N ++L  + +
Sbjct: 196 NLIEVHLKNNQISDVSP--LANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.9 bits (84), Expect = 0.004
 Identities = 31/230 (13%), Positives = 72/230 (31%), Gaps = 21/230 (9%)

Query: 406 SLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFG-ERFSRMVLLIL 464
           +L++ + +   K+ ++ T+     +   + TL          + +  G +  + ++ L L
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGT----GVTTIEGVQYLNNLIGLEL 70

Query: 465 RSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPL 524
           + N      P +         L          I       T   T    T          
Sbjct: 71  KDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLS- 129

Query: 525 NSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNL 584
                      Q L +      + + +  L  +   S      +    L NL  + +L  
Sbjct: 130 ---------NLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKA 180

Query: 585 SYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSN 634
             N  +   P  + ++ +L  +    N+ +   P  +++ + L  + L+N
Sbjct: 181 DDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 6e-04
 Identities = 14/91 (15%), Positives = 26/91 (28%)

Query: 349 FHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLS 408
                  +  + +   L+L++N +Q      +   Q        NN             S
Sbjct: 142 TIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGAS 201

Query: 409 SLVSLHLRKNRLSGTIPILLKNCTSLVTLDV 439
             V L + + R+       L+N   L     
Sbjct: 202 GPVILDISRTRIHSLPSYGLENLKKLRARST 232

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (84), Expect = 0.004
 Identities = 8/73 (10%), Positives = 14/73 (19%)

Query: 36  HNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKW 95
           +             G           NN +    +     +    L +      S     
Sbjct: 161 NKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG 220

Query: 96  FDRLTHLEHLSLS 108
            + L  L   S  
Sbjct: 221 LENLKKLRARSTY 233

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.5 bits (90), Expect = 0.001
 Identities = 36/331 (10%), Positives = 85/331 (25%), Gaps = 31/331 (9%)

Query: 358 ETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGN----LPTSLGSLSSLVSL 413
           E   LK   +     +  +    +   ++  + LS N         L  ++ S   L   
Sbjct: 6   EGKSLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 64

Query: 414 HLRKNRLS----------GTIPILLKNCTSLVTLDVGENEVFGNIP-----SWFGERFSR 458
                               +   L  C  L T+ + +N                     
Sbjct: 65  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 124

Query: 459 MVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAI 518
            + L                           +     +I    + L   +          
Sbjct: 125 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 184

Query: 519 EYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKA 578
                    +  G   E    +     A   E+  L    +   +L S  L + L +   
Sbjct: 185 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 244

Query: 579 VQSLNLSYNIFTGRIPETIGTM------RSLESIDFSVNKFTGEIPQSMSS-----LTFL 627
           ++ L L+  + + R    +           L+++    N+   +  +++ +     +  L
Sbjct: 245 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDL 304

Query: 628 NHLNLSNNYLTGKIPSSTQLQSFNASCFLGN 658
             L L+ N  + +     +++   ++   G 
Sbjct: 305 LFLELNGNRFSEEDDVVDEIREVFSTRGRGE 335

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 0.003
 Identities = 27/128 (21%), Positives = 54/128 (42%), Gaps = 6/128 (4%)

Query: 386 LMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVF 445
             ALDL   +   +L     + +  V L+ R +  + T+ I+ +N   L++L++  N ++
Sbjct: 24  QQALDLKGLRSDPDL----VAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLY 78

Query: 446 GNIP-SWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNL 504
                S   ++   + +L L  N        +      L+ L L  N+LS T  +    +
Sbjct: 79  RLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYI 138

Query: 505 TAMATVNP 512
           +A+    P
Sbjct: 139 SAIRERFP 146

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (83), Expect = 0.004
 Identities = 25/137 (18%), Positives = 47/137 (34%), Gaps = 9/137 (6%)

Query: 9   DLSNCQLHHFPQLPVANFS-TLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGP 67
           +L   Q+     +    +  +   LDL   + D   V       +    LN   ++    
Sbjct: 3   ELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLV-----AQNIDVVLNRR-SSMAAT 56

Query: 68  IPEGLQNLTSLKHLGLPFNHFS--SSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCN 125
           +    +N+  L  L L  N       +     +  +L+ L+LS N L+        +   
Sbjct: 57  LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLK 116

Query: 126 LRRLYLGGAKLNQEISE 142
           L  L+L G  L+    +
Sbjct: 117 LEELWLDGNSLSDTFRD 133

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	695
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.98
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.91
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.88
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.87
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.82
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.82
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.79
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.77
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.76
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.75
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.72
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.72
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.71
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.7
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.7
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.7
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.69
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.59
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.58
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.57
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.57
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.55
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.55
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.49
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.45
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.31
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.28
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.28
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.26
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.44
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.29
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.94
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.8
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.49
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.44

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.98  E-value=5.9e-32  Score=271.16  Aligned_cols=258  Identities=29%  Similarity=0.530  Sum_probs=230.5

Q ss_pred             ccceeecccccccC--CCCccccCCCCCCEEeCCC-CcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEE
Q 036216          361 KLKFLFLDRNILQG--KLPDCWMSYQNLMALDLSN-NKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTL  437 (695)
Q Consensus       361 ~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~ls~-n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  437 (695)
                      +++.|+++++.+.+  .+|..+.++++|++|++++ |.++|.+|..++.+++|++|++++|++.+..+..+..+..|+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            56777777777766  4678899999999999986 78888899999999999999999999998888889999999999


Q ss_pred             EcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCCC-CEEeCCCCcCcccCChhhhhcccCcccCCCCCC
Q 036216          438 DVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFL-QILDLADNNLSGTIPNCIHNLTAMATVNPFTGN  516 (695)
Q Consensus       438 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L-~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~  516 (695)
                      ++++|.+.+.+|..+. .++.++.+++++|.+.+.+|..+..+..+ +.+++++|++++..|..+..+..          
T Consensus       131 ~l~~N~~~~~~p~~l~-~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~----------  199 (313)
T d1ogqa_         131 DFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL----------  199 (313)
T ss_dssp             ECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC----------
T ss_pred             ccccccccccCchhhc-cCcccceeecccccccccccccccccccccccccccccccccccccccccccc----------
Confidence            9999999888888886 79999999999999999999988888876 88999999999888887765543          


Q ss_pred             cccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCcc
Q 036216          517 AIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPET  596 (695)
Q Consensus       517 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~  596 (695)
                                                             ..++++++...+.+|..+..+++++.+++++|.+.+.+| .
T Consensus       200 ---------------------------------------~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~  239 (313)
T d1ogqa_         200 ---------------------------------------AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-K  239 (313)
T ss_dssp             ---------------------------------------SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-G
T ss_pred             ---------------------------------------ccccccccccccccccccccccccccccccccccccccc-c
Confidence                                                   468899999999999999999999999999999997665 5


Q ss_pred             ccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEEcccCcCcccCCCCcccCccccccccCC-cccCCCCCCCCC
Q 036216          597 IGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIPSSTQLQSFNASCFLGN-NLCGAPLPKNCT  670 (695)
Q Consensus       597 ~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~iP~~~~~~~~~~~~~~~n-~l~~~~~~~~c~  670 (695)
                      ++.+++|+.|+|++|+++|.+|+.++++++|++|+|++|+++|.+|+.+.+++++...+.|| .+||.|++ .|.
T Consensus       240 ~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~plp-~c~  313 (313)
T d1ogqa_         240 VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-ACT  313 (313)
T ss_dssp             CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CCC
T ss_pred             cccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccccCCCCC-CCC
Confidence            89999999999999999999999999999999999999999999999999999999999999 69999976 674

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.96  E-value=4.5e-29  Score=249.96  Aligned_cols=255  Identities=28%  Similarity=0.473  Sum_probs=224.2

Q ss_pred             CCcEEEccCCcCCCc--cchhhhhhhhhccccceeeccc-ccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCC
Q 036216          333 NLTVLELSGNSLSGP--IFHFLCYTINETMKLKFLFLDR-NILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSS  409 (695)
Q Consensus       333 ~L~~L~l~~n~l~~~--~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~  409 (695)
                      .++.|+++++.+.+.  +|.    .+.++++|++|++++ |.+++.+|..+.++++|++|++++|++.+..+..+..+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~----~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~  126 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPS----SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT  126 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCG----GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred             EEEEEECCCCCCCCCCCCCh----HHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhh
Confidence            467788888877763  344    445699999999997 7899899999999999999999999999999999999999


Q ss_pred             CcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCC-cEEEcCCCcccccCCccccCCCCCCEEeC
Q 036216          410 LVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRM-VLLILRSNNFDGPLPTELCDLAFLQILDL  488 (695)
Q Consensus       410 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L-~~L~l~~n~~~~~~~~~l~~l~~L~~L~L  488 (695)
                      |+.+++++|.+.+.+|..+..++.|+.+++++|.+.+.+|..+. .+..+ +.+++++|++++..|..+..+..+ .+++
T Consensus       127 L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~-~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l  204 (313)
T d1ogqa_         127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDL  204 (313)
T ss_dssp             CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG-CCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEEC
T ss_pred             hcccccccccccccCchhhccCcccceeeccccccccccccccc-cccccccccccccccccccccccccccccc-cccc
Confidence            99999999999999999999999999999999999999999887 45554 899999999999999888877554 7999


Q ss_pred             CCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCcccccc
Q 036216          489 ADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGT  568 (695)
Q Consensus       489 ~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~  568 (695)
                      +++...+.+|..+..++++                                                +.+++++|.+.+.
T Consensus       205 ~~~~~~~~~~~~~~~~~~l------------------------------------------------~~l~~~~~~l~~~  236 (313)
T d1ogqa_         205 SRNMLEGDASVLFGSDKNT------------------------------------------------QKIHLAKNSLAFD  236 (313)
T ss_dssp             CSSEEEECCGGGCCTTSCC------------------------------------------------SEEECCSSEECCB
T ss_pred             ccccccccccccccccccc------------------------------------------------ccccccccccccc
Confidence            9999998888877766665                                                7889999999876


Q ss_pred             CCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEEcccCc-Cccc-CCC
Q 036216          569 LPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNY-LTGK-IPS  643 (695)
Q Consensus       569 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~-l~~~-iP~  643 (695)
                      +| .++.+++|+.|+|++|++++.+|+.|+++++|++|+|++|+++|.+|+ +.++++|+.+++++|+ ++|. +|.
T Consensus       237 ~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g~plp~  311 (313)
T d1ogqa_         237 LG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPLPA  311 (313)
T ss_dssp             GG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEESTTSSC
T ss_pred             cc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCccccCCCCCC
Confidence            55 688999999999999999999999999999999999999999999995 5789999999999998 5665 453

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=1.9e-25  Score=230.87  Aligned_cols=101  Identities=26%  Similarity=0.314  Sum_probs=61.5

Q ss_pred             hccccceeecccccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEE
Q 036216          358 ETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTL  437 (695)
Q Consensus       358 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  437 (695)
                      .++.++.+.+..|.+.+.  ..+..+++++.|++++|++++. + .+..+++|++|++++|++++ ++ .+.++++|++|
T Consensus       283 ~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L  356 (384)
T d2omza2         283 GLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDI-S-PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWL  356 (384)
T ss_dssp             TCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCC-G-GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEE
T ss_pred             cccccccccccccccccc--cccchhcccCeEECCCCCCCCC-c-ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEE
Confidence            355566666666665532  2355666677777777766643 2 25666777777777776653 22 46667777777


Q ss_pred             EcCCCcccccCChhhhhcCCCCcEEEcCCC
Q 036216          438 DVGENEVFGNIPSWFGERFSRMVLLILRSN  467 (695)
Q Consensus       438 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n  467 (695)
                      ++++|++++..|  + .++++|+.|++++|
T Consensus       357 ~l~~N~l~~l~~--l-~~l~~L~~L~L~~N  383 (384)
T d2omza2         357 SAGHNQISDLTP--L-ANLTRITQLGLNDQ  383 (384)
T ss_dssp             ECCSSCCCBCGG--G-TTCTTCSEEECCCE
T ss_pred             ECCCCcCCCChh--h-ccCCCCCEeeCCCC
Confidence            777777654333  2 25677777777665

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=1.8e-25  Score=231.09  Aligned_cols=353  Identities=21%  Similarity=0.271  Sum_probs=212.6

Q ss_pred             EccCcccccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCC
Q 036216          159 ALASSSISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPP  238 (695)
Q Consensus       159 ~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~  238 (695)
                      .+..+.+++.+.  ...+.+|++|+++++.|+              .+.  .+..+++|++|++++|+++...  .+..+
T Consensus        28 ~l~~~~~~~~~~--~~~l~~l~~L~l~~~~I~--------------~l~--gl~~L~nL~~L~Ls~N~l~~l~--~l~~L   87 (384)
T d2omza2          28 VLGKTNVTDTVS--QTDLDQVTTLQADRLGIK--------------SID--GVEYLNNLTQINFSNNQLTDIT--PLKNL   87 (384)
T ss_dssp             HTTCSSTTSEEC--HHHHTTCCEEECCSSCCC--------------CCT--TGGGCTTCCEEECCSSCCCCCG--GGTTC
T ss_pred             HhCCCCCCCccC--HHHhCCCCEEECCCCCCC--------------Ccc--ccccCCCCCEEeCcCCcCCCCc--cccCC
Confidence            455555555443  346777888888877775              332  3566777777777777766432  25555


Q ss_pred             CCccEEEccCCCCCCCCCccccCCCCCCEEEcccCCCccccChHHhhcccccceeecccccccccccCccccCccceEec
Q 036216          239 FQLIELGLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLLKSASQLYLLDLGHNQIHGELTNLTKASQLSYLSL  318 (695)
Q Consensus       239 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l  318 (695)
                      ++|++|++++|.+.+..  .+..+++|+.|+++++.+.+..+.   .....+.......+.+.                 
T Consensus        88 ~~L~~L~L~~n~i~~i~--~l~~l~~L~~L~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~-----------------  145 (384)
T d2omza2          88 TKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITDIDPL---KNLTNLNRLELSSNTIS-----------------  145 (384)
T ss_dssp             TTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCGGG---TTCTTCSEEEEEEEEEC-----------------
T ss_pred             ccccccccccccccccc--cccccccccccccccccccccccc---ccccccccccccccccc-----------------
Confidence            55555555555554432  144555555555555544421111   11223333333333332                 


Q ss_pred             ccccceeecCCCCC---CCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeCCCCc
Q 036216          319 IANNFSGSLPLISS---NLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNK  395 (695)
Q Consensus       319 ~~n~~~~~~~~~~~---~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~  395 (695)
                            ...+....   ............         ..+.............+...  ....+..+++++.+++++|.
T Consensus       146 ------~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~l~l~~n~  208 (384)
T d2omza2         146 ------DISALSGLTSLQQLSFGNQVTDL---------KPLANLTTLERLDISSNKVS--DISVLAKLTNLESLIATNNQ  208 (384)
T ss_dssp             ------CCGGGTTCTTCSEEEEEESCCCC---------GGGTTCTTCCEEECCSSCCC--CCGGGGGCTTCSEEECCSSC
T ss_pred             ------ccccccccccccccccccccchh---------hhhccccccccccccccccc--cccccccccccceeeccCCc
Confidence                  11111100   000111100000         00111222333333333322  23445667778888888887


Q ss_pred             ccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCc
Q 036216          396 FTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPT  475 (695)
Q Consensus       396 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  475 (695)
                      +++..|  +..+++|++|++++|.++..  ..+..+++|+.+++++|.+.+..+  + ..+++|++|++++|++.+..  
T Consensus       209 i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~-~~~~~L~~L~l~~~~l~~~~--  279 (384)
T d2omza2         209 ISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--L-SGLTKLTELKLGANQISNIS--  279 (384)
T ss_dssp             CCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G-TTCTTCSEEECCSSCCCCCG--
T ss_pred             cCCCCc--ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCCc--c-cccccCCEeeccCcccCCCC--
Confidence            775433  35567788888888877642  356777888888888887754333  2 25778888888888877542  


Q ss_pred             cccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccc
Q 036216          476 ELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLV  555 (695)
Q Consensus       476 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  555 (695)
                      .+..++.++.+++++|++++ + ..+..++                                                .+
T Consensus       280 ~~~~~~~l~~l~~~~n~l~~-~-~~~~~~~------------------------------------------------~l  309 (384)
T d2omza2         280 PLAGLTALTNLELNENQLED-I-SPISNLK------------------------------------------------NL  309 (384)
T ss_dssp             GGTTCTTCSEEECCSSCCSC-C-GGGGGCT------------------------------------------------TC
T ss_pred             cccccccccccccccccccc-c-cccchhc------------------------------------------------cc
Confidence            36778888888888888763 1 1233333                                                34


Q ss_pred             cEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEEcccC
Q 036216          556 RIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNN  635 (695)
Q Consensus       556 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N  635 (695)
                      +.|++++|++++..  .+..+++|++|++++|+++ .++ .++++++|+.|++++|++++..|  +.++++|+.|+|++|
T Consensus       310 ~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~-~l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         310 TYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVS-DVS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             SEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCC-CCG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CeEECCCCCCCCCc--ccccCCCCCEEECCCCCCC-CCh-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            78899999998653  3788999999999999998 454 58999999999999999986544  888999999999987

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=9e-24  Score=210.26  Aligned_cols=271  Identities=16%  Similarity=0.227  Sum_probs=203.1

Q ss_pred             cceEecccccceeecCCCCCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeCC
Q 036216          313 LSYLSLIANNFSGSLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLS  392 (695)
Q Consensus       313 L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls  392 (695)
                      .+.++-++..++...+..++++++|++++|+++...+    .+|.++++|++|++++|.+....|.+|..++.|++|+++
T Consensus        12 ~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~----~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          12 LRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKD----GDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             TTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCT----TTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCCCccCCCCCCCCCEEECcCCcCCCcCh----hHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence            3344444444443333334677888888887764322    234468889999999999887778888899999999999


Q ss_pred             CCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCccc--ccCChhhhhcCCCCcEEEcCCCccc
Q 036216          393 NNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVF--GNIPSWFGERFSRMVLLILRSNNFD  470 (695)
Q Consensus       393 ~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~--~~~~~~~~~~l~~L~~L~l~~n~~~  470 (695)
                      +|+++ .+|..+  .+.++.|++.+|.+.+..+..+.....+..++...|...  ...+..+ ..+++|+.+++++|.+.
T Consensus        88 ~n~l~-~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~-~~l~~L~~l~l~~n~l~  163 (305)
T d1xkua_          88 KNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF-QGMKKLSYIRIADTNIT  163 (305)
T ss_dssp             SSCCS-BCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGG-GGCTTCCEEECCSSCCC
T ss_pred             CCccC-cCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCcccc-ccccccCccccccCCcc
Confidence            99888 455433  367888999999888766666777888888888887542  2223333 36888999999999887


Q ss_pred             ccCCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhh
Q 036216          471 GPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNE  550 (695)
Q Consensus       471 ~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  550 (695)
                      . +|..  .+++|+.|++++|.+++..+..+..++.+                                           
T Consensus       164 ~-l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l-------------------------------------------  197 (305)
T d1xkua_         164 T-IPQG--LPPSLTELHLDGNKITKVDAASLKGLNNL-------------------------------------------  197 (305)
T ss_dssp             S-CCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTC-------------------------------------------
T ss_pred             c-cCcc--cCCccCEEECCCCcCCCCChhHhhccccc-------------------------------------------
Confidence            4 4443  36789999999998887777777666555                                           


Q ss_pred             hcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCC------cCC
Q 036216          551 ILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSM------SSL  624 (695)
Q Consensus       551 ~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l------~~l  624 (695)
                           ++|++++|.+++..+..+.++++|++|+|++|+++ .+|++|+.+++|+.|+|++|+|+......|      ..+
T Consensus       198 -----~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~  271 (305)
T d1xkua_         198 -----AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKK  271 (305)
T ss_dssp             -----CEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTS
T ss_pred             -----cccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhccc
Confidence                 78889999999888888999999999999999998 678889999999999999999985433333      457


Q ss_pred             CCCCEEEcccCcCc-ccCCC
Q 036216          625 TFLNHLNLSNNYLT-GKIPS  643 (695)
Q Consensus       625 ~~L~~L~ls~N~l~-~~iP~  643 (695)
                      .+|+.|++++|++. ..+|.
T Consensus       272 ~~L~~L~L~~N~~~~~~~~~  291 (305)
T d1xkua_         272 ASYSGVSLFSNPVQYWEIQP  291 (305)
T ss_dssp             CCCSEEECCSSSSCGGGSCG
T ss_pred             CCCCEEECCCCcCccCcCCH
Confidence            88999999999985 45544

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.4e-24  Score=210.68  Aligned_cols=226  Identities=19%  Similarity=0.168  Sum_probs=155.1

Q ss_pred             ecccccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCccc
Q 036216          366 FLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVF  445 (695)
Q Consensus       366 ~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~  445 (695)
                      ..+++.++ .+|..+.  +++++|+|++|+++...+.+|.++++|++|++++|++....+..+..+..++.+++..+...
T Consensus        17 ~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~   93 (284)
T d1ozna_          17 SCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL   93 (284)
T ss_dssp             ECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC
T ss_pred             EcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccccc
Confidence            33444444 4444332  45677777777777655566777777777777777777666666777777777766544333


Q ss_pred             ccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCC
Q 036216          446 GNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLN  525 (695)
Q Consensus       446 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~  525 (695)
                      ..++...+..+++|++|++++|.+....+..+..+++|+.+++++|++++..+..|..++.|                  
T Consensus        94 ~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L------------------  155 (284)
T d1ozna_          94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL------------------  155 (284)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC------------------
T ss_pred             ccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccch------------------
Confidence            44444333467777777777777766666667777777777777777775445555554444                  


Q ss_pred             CCCCCCccccceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCE
Q 036216          526 STIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLES  605 (695)
Q Consensus       526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  605 (695)
                                                    +.|++++|++++..+..|.++++|+++++++|++++..|..|+.+++|+.
T Consensus       156 ------------------------------~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~  205 (284)
T d1ozna_         156 ------------------------------THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT  205 (284)
T ss_dssp             ------------------------------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             ------------------------------hhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhccc
Confidence                                          67777777777777777777888888888888887777777888888888


Q ss_pred             EECCCCcccccCCcCCcCCCCCCEEEcccCcCcccCC
Q 036216          606 IDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIP  642 (695)
Q Consensus       606 L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~iP  642 (695)
                      |++++|++.+..|..|..+++|++|++++|++.+..+
T Consensus       206 L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~  242 (284)
T d1ozna_         206 LYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (284)
T ss_dssp             EECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             ccccccccccccccccccccccCEEEecCCCCCCCcc
Confidence            8888888877667777777888888888887776544

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=2.3e-22  Score=199.93  Aligned_cols=268  Identities=20%  Similarity=0.188  Sum_probs=219.8

Q ss_pred             CcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCC
Q 036216            5 LVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLP   84 (695)
Q Consensus         5 L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~   84 (695)
                      .+++|.++..++.+|.. +  .+++++|+|++|+|+.+ .+.+|.++++|++|++++|.+....|.+|.++++|++|+++
T Consensus        12 ~~~~~C~~~~L~~lP~~-l--~~~l~~L~Ls~N~i~~l-~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          12 LRVVQCSDLGLEKVPKD-L--PPDTALLDLQNNKITEI-KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             TTEEECTTSCCCSCCCS-C--CTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCCCccCCC-C--CCCCCEEECcCCcCCCc-ChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence            57899999999999873 3  36899999999999883 33478899999999999999998888999999999999999


Q ss_pred             CCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCcc
Q 036216           85 FNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSS  164 (695)
Q Consensus        85 ~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~  164 (695)
                      +|+++. +|..+  ...++.|++++|.+.+..+..+.....++.++...|........  ...+..+.. ++.+++++|.
T Consensus        88 ~n~l~~-l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~--~~~~~~l~~-L~~l~l~~n~  161 (305)
T d1xkua_          88 KNQLKE-LPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE--NGAFQGMKK-LSYIRIADTN  161 (305)
T ss_dssp             SSCCSB-CCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBC--TTGGGGCTT-CCEEECCSSC
T ss_pred             CCccCc-Cccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCC--ccccccccc-cCccccccCC
Confidence            999984 55433  46899999999999987777888889999999988865432211  113444444 9999999998


Q ss_pred             cccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCCCCccEE
Q 036216          165 ISGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIEL  244 (695)
Q Consensus       165 ~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L  244 (695)
                      +... +..  .+++|++|++++|.+.              ......|.+++.++.|++++|.+....+..+..+++|++|
T Consensus       162 l~~l-~~~--~~~~L~~L~l~~n~~~--------------~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L  224 (305)
T d1xkua_         162 ITTI-PQG--LPPSLTELHLDGNKIT--------------KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLREL  224 (305)
T ss_dssp             CCSC-CSS--CCTTCSEEECTTSCCC--------------EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEE
T ss_pred             cccc-Ccc--cCCccCEEECCCCcCC--------------CCChhHhhccccccccccccccccccccccccccccceee
Confidence            8764 322  3678999999999876              4444578999999999999999999888899999999999


Q ss_pred             EccCCCCCCCCCccccCCCCCCEEEcccCCCccccChHHh------hcccccceeeccccccc
Q 036216          245 GLRSCDVGSRFPLWLYSQKDLQFLDLFNSGISGTFPNRLL------KSASQLYLLDLGHNQIH  301 (695)
Q Consensus       245 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~------~~l~~L~~L~l~~n~l~  301 (695)
                      ++++|.+.. +|.++..+++|++|++++|+++ .++...|      ...++|+.|++++|.+.
T Consensus       225 ~L~~N~L~~-lp~~l~~l~~L~~L~Ls~N~i~-~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         225 HLNNNKLVK-VPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             ECCSSCCSS-CCTTTTTCSSCCEEECCSSCCC-CCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             ecccccccc-cccccccccCCCEEECCCCccC-ccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            999999875 5778999999999999999998 6665443      34678999999999875

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.1e-23  Score=202.84  Aligned_cols=223  Identities=22%  Similarity=0.202  Sum_probs=126.6

Q ss_pred             EEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCC-C
Q 036216            7 ELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLP-F   85 (695)
Q Consensus         7 ~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~-~   85 (695)
                      +++.++++++.+|.. +  .+.+++|+|++|+|+.+ .+.+|.++++|++|++++|.+....+..+..+..+++++.. .
T Consensus        15 ~v~c~~~~L~~iP~~-i--p~~~~~L~Ls~N~i~~i-~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~   90 (284)
T d1ozna_          15 TTSCPQQGLQAVPVG-I--PAASQRIFLHGNRISHV-PAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (284)
T ss_dssp             EEECCSSCCSSCCTT-C--CTTCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             EEEcCCCCCCccCCC-C--CCCCCEEECcCCcCCCC-CHHHhhccccccccccccccccccccccccccccccccccccc
Confidence            345555556665542 1  13456666666666542 23345555566666666665555555555555555555443 3


Q ss_pred             CCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCccc
Q 036216           86 NHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSI  165 (695)
Q Consensus        86 n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~  165 (695)
                      +.++...+..|.++++|++|++++|.+....+..+....+|+.+++++|.+                             
T Consensus        91 ~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l-----------------------------  141 (284)
T d1ozna_          91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL-----------------------------  141 (284)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC-----------------------------
T ss_pred             cccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccc-----------------------------
Confidence            344444455555555555555555555444444444444455544444444                             


Q ss_pred             ccccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCCCCccEEE
Q 036216          166 SGHLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELG  245 (695)
Q Consensus       166 ~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  245 (695)
                      ++..+..|..+++|++|++++|+++              .+++..|.++++|+.+++++|++.+..+..|..++++++|+
T Consensus       142 ~~i~~~~f~~~~~L~~L~l~~N~l~--------------~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~  207 (284)
T d1ozna_         142 QALPDDTFRDLGNLTHLFLHGNRIS--------------SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY  207 (284)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCC--------------EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             cccChhHhccccchhhcccccCccc--------------ccchhhhccccccchhhhhhccccccChhHhhhhhhccccc
Confidence            3334455677777888888888775              56666777777777777777777666555555555555555


Q ss_pred             ccCCCCCCCCCccccCCCCCCEEEcccCCCc
Q 036216          246 LRSCDVGSRFPLWLYSQKDLQFLDLFNSGIS  276 (695)
Q Consensus       246 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~  276 (695)
                      +++|.+.+..+.++..+++|++|++++|.+.
T Consensus       208 l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         208 LFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             CCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             ccccccccccccccccccccCEEEecCCCCC
Confidence            5555555555555555555555555555443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.3e-22  Score=193.96  Aligned_cols=201  Identities=20%  Similarity=0.214  Sum_probs=141.3

Q ss_pred             CCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEE
Q 036216          383 YQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGENEVFGNIPSWFGERFSRMVLL  462 (695)
Q Consensus       383 ~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L  462 (695)
                      ...+.+++.+++.++ .+|..+.  +++++|+|++|++++..+..|.++++|++|++++|.+. .+|..  ..+++|++|
T Consensus         9 ~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~~--~~l~~L~~L   82 (266)
T d1p9ag_           9 VASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPVLGTL   82 (266)
T ss_dssp             STTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTTCCEE
T ss_pred             cCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccccc--ccccccccc
Confidence            344555566666555 3444332  45666666666666555555666666666666666653 33322  246667777


Q ss_pred             EcCCCcccccCCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEec
Q 036216          463 ILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTK  542 (695)
Q Consensus       463 ~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  542 (695)
                      ++++|++.+ .+..+..+++|++|++++|.+.+..+..+..+..+                                   
T Consensus        83 ~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l-----------------------------------  126 (266)
T d1p9ag_          83 DLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL-----------------------------------  126 (266)
T ss_dssp             ECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC-----------------------------------
T ss_pred             ccccccccc-cccccccccccccccccccccceeecccccccccc-----------------------------------
Confidence            777777663 35567777888888888887775444444444433                                   


Q ss_pred             CCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCc
Q 036216          543 GVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMS  622 (695)
Q Consensus       543 ~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~  622 (695)
                                   +.|++++|.+++..+..+..++.|+.|++++|++++..++.|+.+++|+.|+|++|+++ .+|+++.
T Consensus       127 -------------~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~  192 (266)
T d1p9ag_         127 -------------QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFF  192 (266)
T ss_dssp             -------------CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTT
T ss_pred             -------------ccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHC
Confidence                         67778888888677777788889999999999999777888899999999999999998 7888888


Q ss_pred             CCCCCCEEEcccCcCcc
Q 036216          623 SLTFLNHLNLSNNYLTG  639 (695)
Q Consensus       623 ~l~~L~~L~ls~N~l~~  639 (695)
                      .+++|+.|+|++|++..
T Consensus       193 ~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         193 GSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             TTCCCSEEECCSCCBCC
T ss_pred             CCCCCCEEEecCCCCCC
Confidence            89999999999998763

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2e-21  Score=188.34  Aligned_cols=200  Identities=20%  Similarity=0.159  Sum_probs=164.7

Q ss_pred             ccccceeecccccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEE
Q 036216          359 TMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLD  438 (695)
Q Consensus       359 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  438 (695)
                      ...+.+++.+++.++ .+|..+.  +++++|+|++|.+++..+.+|..+++|++|++++|+++.. + .+..+++|++|+
T Consensus         9 ~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~   83 (266)
T d1p9ag_           9 VASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGTLD   83 (266)
T ss_dssp             STTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCCEEE
T ss_pred             cCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc-c-cccccccccccc
Confidence            345566777777777 4565543  5789999999999876677888999999999999998854 3 356789999999


Q ss_pred             cCCCcccccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcc
Q 036216          439 VGENEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAI  518 (695)
Q Consensus       439 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l  518 (695)
                      +++|++. ..+..+. .+++|+.|++++|.+.+..+..+..+.++++|++++|.+++..+..+..++.+           
T Consensus        84 Ls~N~l~-~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l-----------  150 (266)
T d1p9ag_          84 LSHNQLQ-SLPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL-----------  150 (266)
T ss_dssp             CCSSCCS-SCCCCTT-TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-----------
T ss_pred             ccccccc-ccccccc-cccccccccccccccceeeccccccccccccccccccccceeccccccccccc-----------
Confidence            9999884 4454443 68999999999999988888888899999999999999985555556555554           


Q ss_pred             cccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCcccc
Q 036216          519 EYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIG  598 (695)
Q Consensus       519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~  598 (695)
                                                           +.+++++|++++..+..|..+++|++|+|++|+|+ .+|+.+.
T Consensus       151 -------------------------------------~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~  192 (266)
T d1p9ag_         151 -------------------------------------EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFF  192 (266)
T ss_dssp             -------------------------------------CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTT
T ss_pred             -------------------------------------hhcccccccccccCccccccccccceeecccCCCc-ccChhHC
Confidence                                                 78899999999888888999999999999999999 8888888


Q ss_pred             CcCCCCEEECCCCccc
Q 036216          599 TMRSLESIDFSVNKFT  614 (695)
Q Consensus       599 ~l~~L~~L~Ls~n~l~  614 (695)
                      .+++|+.|+|++|.+.
T Consensus       193 ~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         193 GSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             TTCCCSEEECCSCCBC
T ss_pred             CCCCCCEEEecCCCCC
Confidence            9999999999999876

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1e-21  Score=207.77  Aligned_cols=112  Identities=19%  Similarity=0.251  Sum_probs=65.9

Q ss_pred             CCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcc----cCCccCCCCCCCCEEeCCCCCCCCC----chhhhc-C
Q 036216           28 TLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQG----PIPEGLQNLTSLKHLGLPFNHFSSS----VPKWFD-R   98 (695)
Q Consensus        28 ~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~----~p~~~~-~   98 (695)
                      +|++||+++|++++..+.+.+..++++|+|+|++|.++.    .++.++..+++|++|+|++|.++..    +...+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            456666666666653334444556666777777776652    2234456667777777777766421    112222 2


Q ss_pred             CCCCCEEEcccCcCCcc----cchhhcCCCCCCEEEccCCcCccc
Q 036216           99 LTHLEHLSLSYNSLEGR----IPRSMARLCNLRRLYLGGAKLNQE  139 (695)
Q Consensus        99 l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~  139 (695)
                      ..+|++|++++|.++..    ++..+..+++|++|++++|.+...
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~  127 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDA  127 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccchhh
Confidence            24677777777776542    344566677777777777776543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.82  E-value=6.3e-18  Score=171.47  Aligned_cols=95  Identities=24%  Similarity=0.337  Sum_probs=51.7

Q ss_pred             CCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEEc
Q 036216           28 TLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSL  107 (695)
Q Consensus        28 ~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  107 (695)
                      ++++|||+++.++.  +|+.   .++|++|++++|+|+ .+|+.   +.+|++|++++|.++. ++. +  .+.|++|++
T Consensus        39 ~l~~LdLs~~~L~~--lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~~-l~~-l--p~~L~~L~L  105 (353)
T d1jl5a_          39 QAHELELNNLGLSS--LPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLKA-LSD-L--PPLLEYLGV  105 (353)
T ss_dssp             TCSEEECTTSCCSC--CCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CCS-C--CTTCCEEEC
T ss_pred             CCCEEEeCCCCCCC--CCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccch-hhh-h--ccccccccc
Confidence            45566666666654  4542   345666666666665 34433   2456666666666552 221 1  134666666


Q ss_pred             ccCcCCcccchhhcCCCCCCEEEccCCcCc
Q 036216          108 SYNSLEGRIPRSMARLCNLRRLYLGGAKLN  137 (695)
Q Consensus       108 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  137 (695)
                      ++|.+. .+|. ++.+++|++|+++++.+.
T Consensus       106 ~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~  133 (353)
T d1jl5a_         106 SNNQLE-KLPE-LQNSSFLKIIDVDNNSLK  133 (353)
T ss_dssp             CSSCCS-SCCC-CTTCTTCCEEECCSSCCS
T ss_pred             cccccc-cccc-hhhhccceeecccccccc
Confidence            666665 3342 455666666666666554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.79  E-value=4.9e-17  Score=164.77  Aligned_cols=114  Identities=25%  Similarity=0.362  Sum_probs=89.1

Q ss_pred             CCcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeC
Q 036216            4 SLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGL   83 (695)
Q Consensus         4 ~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L   83 (695)
                      ++++|||+++.++.+|+    .+++|++|++++|+|+.  +|+.   ..+|++|++++|+++. +++ +  .+.|++|++
T Consensus        39 ~l~~LdLs~~~L~~lp~----~~~~L~~L~Ls~N~l~~--lp~~---~~~L~~L~l~~n~l~~-l~~-l--p~~L~~L~L  105 (353)
T d1jl5a_          39 QAHELELNNLGLSSLPE----LPPHLESLVASCNSLTE--LPEL---PQSLKSLLVDNNNLKA-LSD-L--PPLLEYLGV  105 (353)
T ss_dssp             TCSEEECTTSCCSCCCS----CCTTCSEEECCSSCCSS--CCCC---CTTCCEEECCSSCCSC-CCS-C--CTTCCEEEC
T ss_pred             CCCEEEeCCCCCCCCCC----CCCCCCEEECCCCCCcc--cccc---hhhhhhhhhhhcccch-hhh-h--ccccccccc
Confidence            68899999999999985    25789999999999997  7764   4689999999999883 332 1  246999999


Q ss_pred             CCCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcC
Q 036216           84 PFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKL  136 (695)
Q Consensus        84 ~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l  136 (695)
                      ++|.+.. +|. ++.+++|++|+++++.+... +.   ....+..+.+..+..
T Consensus       106 ~~n~l~~-lp~-~~~l~~L~~L~l~~~~~~~~-~~---~~~~l~~l~~~~~~~  152 (353)
T d1jl5a_         106 SNNQLEK-LPE-LQNSSFLKIIDVDNNSLKKL-PD---LPPSLEFIAAGNNQL  152 (353)
T ss_dssp             CSSCCSS-CCC-CTTCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCC
T ss_pred             ccccccc-ccc-hhhhccceeecccccccccc-cc---ccccccchhhccccc
Confidence            9999984 554 68899999999999988743 32   234566666655443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=5.2e-20  Score=194.43  Aligned_cols=192  Identities=20%  Similarity=0.117  Sum_probs=121.8

Q ss_pred             cCccceEeccccccee--------ecCCCCCCCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCcc--
Q 036216          310 ASQLSYLSLIANNFSG--------SLPLISSNLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDC--  379 (695)
Q Consensus       310 ~~~L~~L~l~~n~~~~--------~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~--  379 (695)
                      .+.++.+++..|.+..        ........++.+++++|.+...........+...+.++.+++++|.+.+.....  
T Consensus       225 ~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~  304 (460)
T d1z7xw1         225 KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLC  304 (460)
T ss_dssp             CTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHH
T ss_pred             cccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence            3555666666554321        122234577888888887765544445555566778888888888775322211  


Q ss_pred             ---ccCCCCCCEEeCCCCcccccCC----ccccCCCCCcEEECcCCcceee----CCcccc-CCCCCcEEEcCCCccccc
Q 036216          380 ---WMSYQNLMALDLSNNKFTGNLP----TSLGSLSSLVSLHLRKNRLSGT----IPILLK-NCTSLVTLDVGENEVFGN  447 (695)
Q Consensus       380 ---~~~~~~L~~L~ls~n~~~~~~~----~~~~~l~~L~~L~l~~n~l~~~----~~~~~~-~l~~L~~L~l~~n~~~~~  447 (695)
                         ......|+.+++++|.+.....    ..+...++|++|+|++|++.+.    ++..+. ..+.|++|++++|.++..
T Consensus       305 ~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~  384 (460)
T d1z7xw1         305 ETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDS  384 (460)
T ss_dssp             HHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHH
T ss_pred             ccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChH
Confidence               1234578888898888764332    2334567899999999887642    222332 456799999999988542


Q ss_pred             ----CChhhhhcCCCCcEEEcCCCcccccCCc----ccc-CCCCCCEEeCCCCcCcccCChhhh
Q 036216          448 ----IPSWFGERFSRMVLLILRSNNFDGPLPT----ELC-DLAFLQILDLADNNLSGTIPNCIH  502 (695)
Q Consensus       448 ----~~~~~~~~l~~L~~L~l~~n~~~~~~~~----~l~-~l~~L~~L~L~~n~l~~~~p~~~~  502 (695)
                          +...+. .+++|++|++++|+++.....    .+. +...|+.|++.+|.+....+..+.
T Consensus       385 ~~~~l~~~l~-~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l~  447 (460)
T d1z7xw1         385 SCSSLAATLL-ANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQ  447 (460)
T ss_dssp             HHHHHHHHHH-HCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHH
T ss_pred             HHHHHHHHHh-cCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHHHH
Confidence                233333 578899999999988753222    222 345799999999998765555443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=4.3e-18  Score=160.43  Aligned_cols=206  Identities=19%  Similarity=0.294  Sum_probs=132.6

Q ss_pred             cceeecccccccCCCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeCCccccCCCCCcEEEcCC
Q 036216          362 LKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTIPILLKNCTSLVTLDVGE  441 (695)
Q Consensus       362 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  441 (695)
                      +..+++..+.+++..  .+..+.+|++|++.+|.++. ++ .+..+++|++|++++|++.+..|  +..+++|+.+++++
T Consensus        21 ~~~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~   94 (227)
T d1h6ua2          21 AIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSG   94 (227)
T ss_dssp             HHHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCS
T ss_pred             HHHHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCc-ch-hHhcCCCCcEeecCCceeecccc--cccccccccccccc
Confidence            334455555555432  23455666777777776663 32 36666777777777776664332  56667777777776


Q ss_pred             CcccccCChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCccccc
Q 036216          442 NEVFGNIPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYS  521 (695)
Q Consensus       442 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~  521 (695)
                      |.+ ..++. +. .+++|+.+.+++|...+.  ..+...+.++.+.++++.+....  .+..++                
T Consensus        95 n~~-~~i~~-l~-~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~----------------  151 (227)
T d1h6ua2          95 NPL-KNVSA-IA-GLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNIS--PLAGLT----------------  151 (227)
T ss_dssp             CCC-SCCGG-GT-TCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCG--GGGGCT----------------
T ss_pred             ccc-ccccc-cc-cccccccccccccccccc--chhccccchhhhhchhhhhchhh--hhcccc----------------
Confidence            665 23332 22 566777777777666543  23556677777777777665221  122222                


Q ss_pred             CCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcC
Q 036216          522 FPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMR  601 (695)
Q Consensus       522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~  601 (695)
                                                      .++.|++++|.+.+.  ..++++++|++|++++|++++ +|. +++++
T Consensus       152 --------------------------------~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~-l~~-l~~l~  195 (227)
T d1h6ua2         152 --------------------------------NLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISD-ISP-LASLP  195 (227)
T ss_dssp             --------------------------------TCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-CGG-GGGCT
T ss_pred             --------------------------------ccccccccccccccc--hhhcccccceecccCCCccCC-Chh-hcCCC
Confidence                                            236777888877633  237888899999999998884 443 78889


Q ss_pred             CCCEEECCCCcccccCCcCCcCCCCCCEEEccc
Q 036216          602 SLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSN  634 (695)
Q Consensus       602 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~  634 (695)
                      +|+.|++++|++++ +| .++++++|++|++++
T Consensus       196 ~L~~L~Ls~N~lt~-i~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         196 NLIEVHLKNNQISD-VS-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             TCCEEECTTSCCCB-CG-GGTTCTTCCEEEEEE
T ss_pred             CCCEEECcCCcCCC-Cc-ccccCCCCCEEEeeC
Confidence            99999999999885 44 378899999999874

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.75  E-value=2.3e-18  Score=157.31  Aligned_cols=174  Identities=20%  Similarity=0.209  Sum_probs=142.1

Q ss_pred             CcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCC
Q 036216            5 LVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLP   84 (695)
Q Consensus         5 L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~   84 (695)
                      .+++++++++++.+|.+.   .+++++|+|++|.|+....+..|.++++|++|+|++|.+....+..|..+++|++|+++
T Consensus        10 ~~~v~Cs~~~L~~iP~~l---p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTSCCSSCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEEeCCCcCccCCCC---CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            568999999999999743   26899999999999864356778899999999999999999999999999999999999


Q ss_pred             CCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCcc
Q 036216           85 FNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSS  164 (695)
Q Consensus        85 ~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~  164 (695)
                      +|+++++.|.+|.++++|++|+|++|.|++..+.+|..+++|++|++++|.+.......   ++   ...++.+.+..+.
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~---~~---~~~l~~~~l~~~~  160 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA---WF---AEWLRKKSLNGGA  160 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGH---HH---HHHHHHHCCSGGG
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchH---HH---hhhhhhhcccCCC
Confidence            99999888889999999999999999999888889999999999999999987654331   11   1125556666677


Q ss_pred             cccccchhcCCCCCCCEEEccCCCcC
Q 036216          165 ISGHLTDQLGQFKNLDSLDLSNNSIV  190 (695)
Q Consensus       165 ~~~~~~~~l~~l~~L~~L~L~~n~i~  190 (695)
                      +....|..   +..++.++++.|.+.
T Consensus       161 ~~c~~p~~---l~~~~l~~L~~n~l~  183 (192)
T d1w8aa_         161 ARCGAPSK---VRDVQIKDLPHSEFK  183 (192)
T ss_dssp             CBBCSSTT---TTTSBGGGSCTTTCC
T ss_pred             eEeCCChh---hcCCEeeecCHhhCc
Confidence            66655544   344555566666653

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=1.7e-16  Score=149.28  Aligned_cols=203  Identities=21%  Similarity=0.246  Sum_probs=147.2

Q ss_pred             EEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCCC
Q 036216            8 LDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNH   87 (695)
Q Consensus         8 L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~   87 (695)
                      ++++.+.++.+.  .++.+.+|++|++.+|.|++  ++ .+..+++|++|++++|.+.+..  .+..+++|+++++++|.
T Consensus        24 ~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~--l~-~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~   96 (227)
T d1h6ua2          24 IAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNP   96 (227)
T ss_dssp             HHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCC
T ss_pred             HHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCc--ch-hHhcCCCCcEeecCCceeeccc--ccccccccccccccccc
Confidence            445555555543  45667788888888888876  43 4778888888888888887543  37888888888888888


Q ss_pred             CCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCccccc
Q 036216           88 FSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISG  167 (695)
Q Consensus        88 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~  167 (695)
                      ++..  ..+..+++|++++++++...+.  ..+...+.++.+.++++.+....+      +..... +++|++++|.+..
T Consensus        97 ~~~i--~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~------~~~~~~-L~~L~l~~n~~~~  165 (227)
T d1h6ua2          97 LKNV--SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNISP------LAGLTN-LQYLSIGNAQVSD  165 (227)
T ss_dssp             CSCC--GGGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCGG------GGGCTT-CCEEECCSSCCCC
T ss_pred             cccc--cccccccccccccccccccccc--chhccccchhhhhchhhhhchhhh------hccccc-ccccccccccccc
Confidence            7743  3477888888888888876643  346677788888888877754332      233344 8888888888765


Q ss_pred             ccchhcCCCCCCCEEEccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCCCCccEEEcc
Q 036216          168 HLTDQLGQFKNLDSLDLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQLIELGLR  247 (695)
Q Consensus       168 ~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~  247 (695)
                      ..  .++++++|++|++++|+++              .++  .++++++|+.|++++|+++...  .+..+++|+.|+++
T Consensus       166 ~~--~l~~l~~L~~L~Ls~n~l~--------------~l~--~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         166 LT--PLANLSKLTTLKADDNKIS--------------DIS--PLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLT  225 (227)
T ss_dssp             CG--GGTTCTTCCEEECCSSCCC--------------CCG--GGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEE
T ss_pred             ch--hhcccccceecccCCCccC--------------CCh--hhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEee
Confidence            43  3788888889998888876              343  3778888899999888887653  37788888888876


Q ss_pred             C
Q 036216          248 S  248 (695)
Q Consensus       248 ~  248 (695)
                      +
T Consensus       226 n  226 (227)
T d1h6ua2         226 N  226 (227)
T ss_dssp             E
T ss_pred             C
Confidence            3

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.9e-17  Score=157.98  Aligned_cols=202  Identities=13%  Similarity=0.108  Sum_probs=105.5

Q ss_pred             CCCEEeCCCCcccccCCccccCCCCCcEEECcCCcceeeC-CccccCCCCCcEEEcCC-CcccccCChhhhhcCCCCcEE
Q 036216          385 NLMALDLSNNKFTGNLPTSLGSLSSLVSLHLRKNRLSGTI-PILLKNCTSLVTLDVGE-NEVFGNIPSWFGERFSRMVLL  462 (695)
Q Consensus       385 ~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~~l~~L~~L  462 (695)
                      ++++|++++|.++...+.+|.++++|++|++++|.+...+ +..|..++.++++.+.. |.+....+..+ ..+++|+.+
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~-~~l~~L~~l  108 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF-QNLPNLQYL  108 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSE-ECCTTCCEE
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccc-ccccccccc
Confidence            5556666666555444445555566666666665554322 33455555555555543 23322222222 245555555


Q ss_pred             EcCCCcccccCCc-cccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEe
Q 036216          463 ILRSNNFDGPLPT-ELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVT  541 (695)
Q Consensus       463 ~l~~n~~~~~~~~-~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  541 (695)
                      ++++|++....+. .+..+..+..+...++.+....+..+.+++                                    
T Consensus       109 ~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~------------------------------------  152 (242)
T d1xwdc1         109 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS------------------------------------  152 (242)
T ss_dssp             EEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSB------------------------------------
T ss_pred             ccchhhhccccccccccccccccccccccccccccccccccccc------------------------------------
Confidence            5555555432111 122233333344444444422222322221                                    


Q ss_pred             cCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEE-eccCCcccccCCccccCcCCCCEEECCCCcccccCCcC
Q 036216          542 KGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSL-NLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQS  620 (695)
Q Consensus       542 ~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L-~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~  620 (695)
                                 ..++.|++++|+++...+..+ ..++++++ ++++|.++...++.|.++++|+.|++++|+++...+..
T Consensus       153 -----------~~l~~L~l~~n~l~~i~~~~~-~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~  220 (242)
T d1xwdc1         153 -----------FESVILWLNKNGIQEIHNCAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG  220 (242)
T ss_dssp             -----------SSCEEEECCSSCCCEECTTTT-TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSS
T ss_pred             -----------ccceeeecccccccccccccc-cchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHH
Confidence                       123667777777774444333 34454444 56777777444556788888888888888887544556


Q ss_pred             CcCCCCCCEEEcccC
Q 036216          621 MSSLTFLNHLNLSNN  635 (695)
Q Consensus       621 l~~l~~L~~L~ls~N  635 (695)
                      |.++++|+.+++.+.
T Consensus       221 ~~~l~~L~~l~~~~l  235 (242)
T d1xwdc1         221 LENLKKLRARSTYNL  235 (242)
T ss_dssp             CTTCCEEESSSEESS
T ss_pred             HcCCcccccCcCCCC
Confidence            777777776666543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.8e-17  Score=158.05  Aligned_cols=216  Identities=13%  Similarity=0.058  Sum_probs=141.2

Q ss_pred             cEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCccc-CCccCCCCCCCCEEeCC
Q 036216            6 VELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGP-IPEGLQNLTSLKHLGLP   84 (695)
Q Consensus         6 ~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~   84 (695)
                      ++++.++..++.+|...+   +++++|++++|.|+.+ .+.+|.++++|++|++++|.+... .+.+|.++++++++.+.
T Consensus        11 ~~i~c~~~~l~~iP~~l~---~~l~~L~Ls~n~i~~l-~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLP---RNAIELRFVLTKLRVI-QKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSCSSCCSCSC---SCCSEEEEESCCCCEE-CTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCCCCCCcCCCCC---CCCCEEECcCCcCCcc-ChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            678888888888887443   5788999999988863 344677889999999998887653 45678888888888876


Q ss_pred             C-CCCCCCchhhhcCCCCCCEEEcccCcCCcccc-hhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccC
Q 036216           85 F-NHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIP-RSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALAS  162 (695)
Q Consensus        85 ~-n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~  162 (695)
                      . |.+....+..|.++++|++|++++|.+....+ ..+..+..+..+..+++.+....+.    .+......++.+++++
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~----~~~~~~~~l~~L~l~~  162 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERN----SFVGLSFESVILWLNK  162 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTT----SSTTSBSSCEEEECCS
T ss_pred             ccccccccccccccccccccccccchhhhccccccccccccccccccccccccccccccc----ccccccccceeeeccc
Confidence            4 56776777778888999999999888764322 2334455555556666666544333    2233333377777777


Q ss_pred             cccccccchhcCCCCCCCEE-EccCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcccccceeecCCCCCCCCCc
Q 036216          163 SSISGHLTDQLGQFKNLDSL-DLSNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVGANKLTLKVKRDWIPPFQL  241 (695)
Q Consensus       163 n~~~~~~~~~l~~l~~L~~L-~L~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L  241 (695)
                      |.++...+..+. ..+++++ ++++|.++              .++...|.++++|+.|++++|+++......|..+++|
T Consensus       163 n~l~~i~~~~~~-~~~l~~~~~l~~n~l~--------------~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L  227 (242)
T d1xwdc1         163 NGIQEIHNCAFN-GTQLDELNLSDNNNLE--------------ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKL  227 (242)
T ss_dssp             SCCCEECTTTTT-TCCEEEEECTTCTTCC--------------CCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEE
T ss_pred             cccccccccccc-chhhhccccccccccc--------------cccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCccc
Confidence            777765444433 3444333 45666664              5665566777777777777776664444344444444


Q ss_pred             cEE
Q 036216          242 IEL  244 (695)
Q Consensus       242 ~~L  244 (695)
                      +.+
T Consensus       228 ~~l  230 (242)
T d1xwdc1         228 RAR  230 (242)
T ss_dssp             ESS
T ss_pred             ccC
Confidence            433

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=1.7e-16  Score=146.93  Aligned_cols=165  Identities=25%  Similarity=0.323  Sum_probs=108.2

Q ss_pred             CCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCE
Q 036216           25 NFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEH  104 (695)
Q Consensus        25 ~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  104 (695)
                      .+..|++|++++|.++.  ++ .+..+++|++|++++|++++..  .+..+++|++|++++|++++ +| .+..+++|+.
T Consensus        44 ~L~~L~~L~l~~~~i~~--l~-~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~  116 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKS  116 (210)
T ss_dssp             HHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCE
T ss_pred             HhcCccEEECcCCCCCC--ch-hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc-cccccccccc
Confidence            45667777777777765  33 3567777777777777777432  35677777777777777774 33 4777777777


Q ss_pred             EEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCcccccccchhcCCCCCCCEEEc
Q 036216          105 LSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGHLTDQLGQFKNLDSLDL  184 (695)
Q Consensus       105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L  184 (695)
                      |++++|.+..  ...+..+++++.+++++|.+.+..      ....++. |+.+++++|++++..  .+.++++|++|++
T Consensus       117 L~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~~~------~~~~l~~-L~~l~l~~n~l~~i~--~l~~l~~L~~L~L  185 (210)
T d1h6ta2         117 LSLEHNGISD--INGLVHLPQLESLYLGNNKITDIT------VLSRLTK-LDTLSLEDNQISDIV--PLAGLTKLQNLYL  185 (210)
T ss_dssp             EECTTSCCCC--CGGGGGCTTCCEEECCSSCCCCCG------GGGGCTT-CSEEECCSSCCCCCG--GGTTCTTCCEEEC
T ss_pred             cccccccccc--cccccccccccccccccccccccc------ccccccc-ccccccccccccccc--cccCCCCCCEEEC
Confidence            7777777652  235677777777777777765432      2233333 677777777666532  2667777777777


Q ss_pred             cCCCcCCCceEEeeccccccccChhhhhCCCCCCEEEcc
Q 036216          185 SNNSIVGPRVLQLYLNKLHGTLSEIHFANLTKLSVFLVG  223 (695)
Q Consensus       185 ~~n~i~~~~~~~l~~~~~~~~l~~~~~~~l~~L~~L~l~  223 (695)
                      ++|+|+              .++  .+.++++|++|+++
T Consensus       186 s~N~i~--------------~l~--~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         186 SKNHIS--------------DLR--ALAGLKNLDVLELF  208 (210)
T ss_dssp             CSSCCC--------------BCG--GGTTCTTCSEEEEE
T ss_pred             CCCCCC--------------CCh--hhcCCCCCCEEEcc
Confidence            777765              343  36667777777665

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=2.2e-16  Score=146.20  Aligned_cols=165  Identities=26%  Similarity=0.353  Sum_probs=140.8

Q ss_pred             CCCCcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEE
Q 036216            2 LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHL   81 (695)
Q Consensus         2 l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   81 (695)
                      +.+|++|++++|.++.+..  +..+++|++|++++|++++  ++ .++.+++|++|++++|+++. ++ .+..+++|+.|
T Consensus        45 L~~L~~L~l~~~~i~~l~~--l~~l~~L~~L~L~~n~i~~--l~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L  117 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTD--IK-PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSL  117 (210)
T ss_dssp             HHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCC--CG-GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEE
T ss_pred             hcCccEEECcCCCCCCchh--HhhCCCCCEEeCCCccccC--cc-ccccCccccccccccccccc-cc-ccccccccccc
Confidence            3578999999999998864  7889999999999999987  44 36789999999999999985 44 68999999999


Q ss_pred             eCCCCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEcc
Q 036216           82 GLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALA  161 (695)
Q Consensus        82 ~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~  161 (695)
                      ++++|.+...  ..+..+++++.+++++|.+++  +..+..+++|+++++++|++.+..      .++.+++ |++|+++
T Consensus       118 ~l~~~~~~~~--~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i~------~l~~l~~-L~~L~Ls  186 (210)
T d1h6ta2         118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIV------PLAGLTK-LQNLYLS  186 (210)
T ss_dssp             ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCG------GGTTCTT-CCEEECC
T ss_pred             cccccccccc--ccccccccccccccccccccc--cccccccccccccccccccccccc------cccCCCC-CCEEECC
Confidence            9999998743  468899999999999999884  346788999999999999997643      2445666 9999999


Q ss_pred             CcccccccchhcCCCCCCCEEEccC
Q 036216          162 SSSISGHLTDQLGQFKNLDSLDLSN  186 (695)
Q Consensus       162 ~n~~~~~~~~~l~~l~~L~~L~L~~  186 (695)
                      +|.++.. + .+.++++|++|+|++
T Consensus       187 ~N~i~~l-~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         187 KNHISDL-R-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             SSCCCBC-G-GGTTCTTCSEEEEEE
T ss_pred             CCCCCCC-h-hhcCCCCCCEEEccC
Confidence            9999874 3 599999999999874

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=2.1e-16  Score=144.97  Aligned_cols=162  Identities=23%  Similarity=0.293  Sum_probs=103.1

Q ss_pred             EcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCCCC
Q 036216            9 DLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHF   88 (695)
Q Consensus         9 ~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l   88 (695)
                      .++.+.++.+..  ...+.++++|++++|.++.  + +.+..+++|++|++++|++++..  .++++++|++|++++|.+
T Consensus        24 ~l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~--l-~~l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~   96 (199)
T d2omxa2          24 VLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS--I-DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQI   96 (199)
T ss_dssp             HTTCSSTTSEEC--HHHHTTCCEEECTTSCCCC--C-TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCC
T ss_pred             HhCCCCCCCccC--HHHhcCCCEEECCCCCCCC--c-cccccCCCcCcCccccccccCcc--cccCCccccccccccccc
Confidence            344555554432  2356677777877777765  3 24667777778888777777443  277777777888777777


Q ss_pred             CCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEccCcccccc
Q 036216           89 SSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALASSSISGH  168 (695)
Q Consensus        89 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~~~~~  168 (695)
                      ... + .++++++|++|++++|.+...  ..+..+++|+.|++++|++... +     .+..... ++.|++.+|.+++.
T Consensus        97 ~~~-~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~-~-----~l~~~~~-L~~L~l~~n~l~~l  165 (199)
T d2omxa2          97 ADI-T-PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDI-S-----ALSGLTS-LQQLNFSSNQVTDL  165 (199)
T ss_dssp             CCC-G-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCC-G-----GGTTCTT-CSEEECCSSCCCCC
T ss_pred             ccc-c-ccccccccccccccccccccc--cccchhhhhHHhhhhhhhhccc-c-----ccccccc-ccccccccccccCC
Confidence            643 3 377777777777777776632  3466777777777777776432 1     1233333 66666666666553


Q ss_pred             cchhcCCCCCCCEEEccCCCcC
Q 036216          169 LTDQLGQFKNLDSLDLSNNSIV  190 (695)
Q Consensus       169 ~~~~l~~l~~L~~L~L~~n~i~  190 (695)
                      .  .++++++|++|++++|+++
T Consensus       166 ~--~l~~l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         166 K--PLANLTTLERLDISSNKVS  185 (199)
T ss_dssp             G--GGTTCTTCCEEECCSSCCC
T ss_pred             c--cccCCCCCCEEECCCCCCC
Confidence            2  2666677777777776665

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.69  E-value=2.5e-17  Score=150.30  Aligned_cols=58  Identities=21%  Similarity=0.322  Sum_probs=26.2

Q ss_pred             EEEcCCccccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCccc
Q 036216          557 IIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFT  614 (695)
Q Consensus       557 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~  614 (695)
                      +|+|++|+|++..|..|.++++|++|+|++|+|++..|+.|..+++|++|+|++|.+.
T Consensus        82 ~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          82 ELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             EEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             eeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            3334444444333444444444444444444444444444444444444444444443

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=5.3e-16  Score=142.28  Aligned_cols=161  Identities=25%  Similarity=0.356  Sum_probs=136.8

Q ss_pred             CCCCcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEE
Q 036216            2 LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHL   81 (695)
Q Consensus         2 l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   81 (695)
                      ++++++|+++++.++.+.  .++.+++|++|++++|++++  ++. +.++++|++|++++|.+... + .+.++++|++|
T Consensus        39 l~~l~~L~l~~~~i~~l~--~l~~l~nL~~L~Ls~N~l~~--~~~-l~~l~~L~~L~l~~n~~~~~-~-~l~~l~~L~~L  111 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTD--ITP-LKNLTKLVDILMNNNQIADI-T-PLANLTNLTGL  111 (199)
T ss_dssp             HTTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCCC-G-GGTTCTTCSEE
T ss_pred             hcCCCEEECCCCCCCCcc--ccccCCCcCcCccccccccC--ccc-ccCCcccccccccccccccc-c-ccccccccccc
Confidence            468999999999999886  47889999999999999987  444 88999999999999998843 3 58999999999


Q ss_pred             eCCCCCCCCCchhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCccccchhhhhhhcccccccceEEcc
Q 036216           82 GLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQEISEILEIFSGCVSNGLESLALA  161 (695)
Q Consensus        82 ~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~L~~L~L~  161 (695)
                      ++++|.+...  ..+..+++|+.|++++|.+.. + ..+..+++|+.|++.+|++++..      .++.++. |++|+++
T Consensus       112 ~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l~------~l~~l~~-L~~L~ls  180 (199)
T d2omxa2         112 TLFNNQITDI--DPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDLK------PLANLTT-LERLDIS  180 (199)
T ss_dssp             ECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCCG------GGTTCTT-CCEEECC
T ss_pred             cccccccccc--cccchhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccCCc------cccCCCC-CCEEECC
Confidence            9999998854  358899999999999999874 3 46899999999999999997643      2455666 9999999


Q ss_pred             CcccccccchhcCCCCCCCEE
Q 036216          162 SSSISGHLTDQLGQFKNLDSL  182 (695)
Q Consensus       162 ~n~~~~~~~~~l~~l~~L~~L  182 (695)
                      +|++++.  +.++.+++|++|
T Consensus       181 ~N~i~~i--~~l~~L~~L~~L  199 (199)
T d2omxa2         181 SNKVSDI--SVLAKLTNLESL  199 (199)
T ss_dssp             SSCCCCC--GGGGGCTTCSEE
T ss_pred             CCCCCCC--ccccCCCCCCcC
Confidence            9999874  357888888875

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.59  E-value=5.1e-15  Score=123.19  Aligned_cols=118  Identities=26%  Similarity=0.266  Sum_probs=84.7

Q ss_pred             cEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCC
Q 036216            6 VELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPF   85 (695)
Q Consensus         6 ~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~   85 (695)
                      |+|+|++|+++.++.  +..+++|++|++++|.|+.  +|+.++.+++|++|++++|.++.. | .+..+++|++|++++
T Consensus         1 R~L~Ls~n~l~~l~~--l~~l~~L~~L~ls~N~l~~--lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~   74 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCN   74 (124)
T ss_dssp             SEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCS
T ss_pred             CEEEcCCCCCCCCcc--cccCCCCCEEECCCCccCc--chhhhhhhhccccccccccccccc-C-ccccccccCeEECCC
Confidence            578888888887763  7778888888888888876  677777888888888888888743 3 477888888888888


Q ss_pred             CCCCCCc-hhhhcCCCCCCEEEcccCcCCcc---cchhhcCCCCCCEE
Q 036216           86 NHFSSSV-PKWFDRLTHLEHLSLSYNSLEGR---IPRSMARLCNLRRL  129 (695)
Q Consensus        86 n~l~~~~-p~~~~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L  129 (695)
                      |++++.. ...+..+++|++|++++|.++..   .......+++|+.+
T Consensus        75 N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          75 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            8887543 24577778888888888877532   12233445666554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=8.7e-16  Score=149.29  Aligned_cols=252  Identities=18%  Similarity=0.143  Sum_probs=152.7

Q ss_pred             cEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeCCCCccccc-CCccccCCCCCcEE
Q 036216          335 TVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNKFTGN-LPTSLGSLSSLVSL  413 (695)
Q Consensus       335 ~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~~~~~-~~~~~~~l~~L~~L  413 (695)
                      +.+|++++.+...   .....+.  .....+.+....+...... .....+|++||+++|.++.. +...+..+++|++|
T Consensus         3 ~~lDLs~~~l~~~---~l~~l~~--~~~~~lrl~~~~~~~~~~~-~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L   76 (284)
T d2astb2           3 QTLDLTGKNLHPD---VTGRLLS--QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL   76 (284)
T ss_dssp             SEEECTTCBCCHH---HHHHHHH--TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred             CEEECCCCCCCch---HHHHHHh--ccceEeeccccccccchhh-hccCCCCCEEECCCCccCHHHHHHHHHhCCCcccc
Confidence            4677777766432   2221111  1334455555444422222 33456899999999887643 34457788999999


Q ss_pred             ECcCCcceeeCCccccCCCCCcEEEcCCCc-ccccCChhhhhcCCCCcEEEcCCCc-cccc-CCccc-cCCCCCCEEeCC
Q 036216          414 HLRKNRLSGTIPILLKNCTSLVTLDVGENE-VFGNIPSWFGERFSRMVLLILRSNN-FDGP-LPTEL-CDLAFLQILDLA  489 (695)
Q Consensus       414 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~-~~~~l-~~l~~L~~L~L~  489 (695)
                      ++++|.+.+..+..+..+++|++|++++|. ++...-..+...+++|++|++++|. ++.. +...+ ..++.|+.|+++
T Consensus        77 ~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~  156 (284)
T d2astb2          77 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS  156 (284)
T ss_dssp             ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred             cccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhc
Confidence            999998877777778888999999999864 4322222334468889999998874 3321 11222 234678888888


Q ss_pred             CCc--CcccCChhhhhcccCcccCCCCCCcccccCCCCCCCCCCccccceEEEecCCcchhhhhcccccEEEcCCc-ccc
Q 036216          490 DNN--LSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNSTIGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKN-LFS  566 (695)
Q Consensus       490 ~n~--l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n-~l~  566 (695)
                      ++.  ++..   .+.                                            .+...++.|++|++++| .++
T Consensus       157 ~~~~~i~~~---~l~--------------------------------------------~l~~~~~~L~~L~L~~~~~it  189 (284)
T d2astb2         157 GYRKNLQKS---DLS--------------------------------------------TLVRRCPNLVHLDLSDSVMLK  189 (284)
T ss_dssp             SCGGGSCHH---HHH--------------------------------------------HHHHHCTTCSEEECTTCTTCC
T ss_pred             ccccccccc---ccc--------------------------------------------ccccccccccccccccccCCC
Confidence            763  2211   110                                            11123345578888775 466


Q ss_pred             ccCCccccCCCCCCEEeccCC-cccccCCccccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEEcccCcCcccCC
Q 036216          567 GTLPMGLTNLKAVQSLNLSYN-IFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSNNYLTGKIP  642 (695)
Q Consensus       567 ~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~iP  642 (695)
                      +..+..+..+++|++|++++| .++......++++++|+.|++++|--.+.++.....+++   |++..+++++..|
T Consensus       190 d~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~---L~i~~~~ls~~~~  263 (284)
T d2astb2         190 NDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPH---LQINCSHFTTIAR  263 (284)
T ss_dssp             GGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTT---SEESCCCSCCTTC
T ss_pred             chhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCcc---ccccCccCCCCCC
Confidence            666777778888888888885 566555666777888888888877211111111123444   4456666665443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.5e-15  Score=133.22  Aligned_cols=113  Identities=20%  Similarity=0.147  Sum_probs=89.7

Q ss_pred             CCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCCCCCCCchhhhcCCCC
Q 036216           22 PVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTH  101 (695)
Q Consensus        22 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~  101 (695)
                      .|.++.++|+|+|++|+|+.  ++..+..+++|++|+|++|.|+..  +.|..+++|++|++++|.++...+..+..+++
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~--i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~   88 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD   88 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             hccCcCcCcEEECCCCCCCc--cCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccc
Confidence            36677788999999999887  566667888899999999988844  35888889999999999988665566677889


Q ss_pred             CCEEEcccCcCCccc-chhhcCCCCCCEEEccCCcCcc
Q 036216          102 LEHLSLSYNSLEGRI-PRSMARLCNLRRLYLGGAKLNQ  138 (695)
Q Consensus       102 L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~  138 (695)
                      |++|++++|.+.... ...+..+++|++|++++|+++.
T Consensus        89 L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~  126 (162)
T d1a9na_          89 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN  126 (162)
T ss_dssp             CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG
T ss_pred             cccceeccccccccccccccccccccchhhcCCCcccc
Confidence            999999999887432 2467788888888888887754

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=3.2e-15  Score=131.06  Aligned_cols=126  Identities=20%  Similarity=0.122  Sum_probs=107.2

Q ss_pred             CCCCcEEEcCCCcCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEE
Q 036216            2 LPSLVELDLSNCQLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHL   81 (695)
Q Consensus         2 l~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   81 (695)
                      ..++++|+|++|.|+.++. .+..+++|++|++++|.|+.  ++ .+..+++|++|++++|+++...+..+..+++|++|
T Consensus        17 ~~~lr~L~L~~n~I~~i~~-~~~~l~~L~~L~Ls~N~i~~--l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L   92 (162)
T d1a9na_          17 AVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRK--LD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   92 (162)
T ss_dssp             TTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCE--EC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             cCcCcEEECCCCCCCccCc-cccccccCCEEECCCCCCCc--cC-CcccCcchhhhhcccccccCCCccccccccccccc
Confidence            4679999999999999974 56889999999999999987  53 47899999999999999997766677889999999


Q ss_pred             eCCCCCCCCCch-hhhcCCCCCCEEEcccCcCCccc---chhhcCCCCCCEEEc
Q 036216           82 GLPFNHFSSSVP-KWFDRLTHLEHLSLSYNSLEGRI---PRSMARLCNLRRLYL  131 (695)
Q Consensus        82 ~L~~n~l~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~L  131 (695)
                      ++++|+++.... ..+..+++|++|++++|.++...   +..+..+++|++||-
T Consensus        93 ~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          93 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred             eeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCC
Confidence            999999985322 46889999999999999987432   235788999999873

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=4.2e-15  Score=144.36  Aligned_cols=156  Identities=22%  Similarity=0.226  Sum_probs=70.9

Q ss_pred             CCcEEEccCCcCCCccchhhhhhhhhccccceeecccccccCCCCccccCCCCCCEEeCCCCc-cccc-CCccccCCCCC
Q 036216          333 NLTVLELSGNSLSGPIFHFLCYTINETMKLKFLFLDRNILQGKLPDCWMSYQNLMALDLSNNK-FTGN-LPTSLGSLSSL  410 (695)
Q Consensus       333 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ls~n~-~~~~-~~~~~~~l~~L  410 (695)
                      +|++|++++|.+++.   .+...+..+++|++|++++|.+.+..+..+..+++|++|++++|. ++.. +......+++|
T Consensus        47 ~L~~LdLs~~~i~~~---~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          47 RVQHMDLSNSVIEVS---TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCCEEECTTCEECHH---HHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             CCCEEECCCCccCHH---HHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            556666666555432   222223456666666666666655555555566666666666643 3211 11122345566


Q ss_pred             cEEECcCCc-ceee-CCccc-cCCCCCcEEEcCCCc--ccccCChhhhhcCCCCcEEEcCCCc-ccccCCccccCCCCCC
Q 036216          411 VSLHLRKNR-LSGT-IPILL-KNCTSLVTLDVGENE--VFGNIPSWFGERFSRMVLLILRSNN-FDGPLPTELCDLAFLQ  484 (695)
Q Consensus       411 ~~L~l~~n~-l~~~-~~~~~-~~l~~L~~L~l~~n~--~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~l~~l~~L~  484 (695)
                      ++|++++|. +++. ....+ ..++.|+.|+++++.  +.......+...+++|++|++++|. +++.....+.++++|+
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~  203 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ  203 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred             cccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCC
Confidence            666666553 2211 11111 123455555555432  2111112222234455555554432 3333333444444444


Q ss_pred             EEeCCCC
Q 036216          485 ILDLADN  491 (695)
Q Consensus       485 ~L~L~~n  491 (695)
                      +|++++|
T Consensus       204 ~L~L~~C  210 (284)
T d2astb2         204 HLSLSRC  210 (284)
T ss_dssp             EEECTTC
T ss_pred             EEECCCC
Confidence            4444443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.55  E-value=1.7e-14  Score=119.99  Aligned_cols=103  Identities=24%  Similarity=0.278  Sum_probs=89.1

Q ss_pred             CEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEEccc
Q 036216           30 TTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSY  109 (695)
Q Consensus        30 ~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~  109 (695)
                      |+|+|++|.++.  ++. +..+++|++|++++|+++ .+|..+..+++|++|++++|.+++. | .+..+++|++|++++
T Consensus         1 R~L~Ls~n~l~~--l~~-l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~   74 (124)
T d1dcea3           1 RVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCN   74 (124)
T ss_dssp             SEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCS
T ss_pred             CEEEcCCCCCCC--Ccc-cccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-C-ccccccccCeEECCC
Confidence            689999999986  553 789999999999999998 5677899999999999999999954 4 489999999999999


Q ss_pred             CcCCccc-chhhcCCCCCCEEEccCCcCcc
Q 036216          110 NSLEGRI-PRSMARLCNLRRLYLGGAKLNQ  138 (695)
Q Consensus       110 n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~  138 (695)
                      |++.... ...++.+++|++|++++|++..
T Consensus        75 N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          75 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             CccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            9998543 3578899999999999998864

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.49  E-value=4.3e-15  Score=149.30  Aligned_cols=86  Identities=16%  Similarity=0.323  Sum_probs=59.1

Q ss_pred             cccEEEcCCcccccc----CCccccCCCCCCEEeccCCcccccCCccc----cC--cCCCCEEECCCCccccc----CCc
Q 036216          554 LVRIIDFSKNLFSGT----LPMGLTNLKAVQSLNLSYNIFTGRIPETI----GT--MRSLESIDFSVNKFTGE----IPQ  619 (695)
Q Consensus       554 ~l~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~----~~--l~~L~~L~Ls~n~l~~~----~p~  619 (695)
                      .|+.|++++|.++..    +...+..+++|++|+|++|.+++.....+    ..  .+.|++|++++|++...    +..
T Consensus       216 ~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~  295 (344)
T d2ca6a1         216 ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT  295 (344)
T ss_dssp             TCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHH
T ss_pred             hhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHH
Confidence            346777777777532    34556778888899999988875433333    22  36799999999988643    233


Q ss_pred             CCc-CCCCCCEEEcccCcCcc
Q 036216          620 SMS-SLTFLNHLNLSNNYLTG  639 (695)
Q Consensus       620 ~l~-~l~~L~~L~ls~N~l~~  639 (695)
                      .+. +++.|++|++++|++..
T Consensus       296 ~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         296 VIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHHHHCTTCCEEECTTSBSCT
T ss_pred             HHHccCCCCCEEECCCCcCCC
Confidence            342 56789999999998863

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.45  E-value=7.6e-14  Score=140.02  Aligned_cols=92  Identities=14%  Similarity=0.128  Sum_probs=55.1

Q ss_pred             hhcCCCCCCEEEcCCCcCccc----CCccCCCCCCCCEEeCCCCCCCCC----------chhhhcCCCCCCEEEcccCcC
Q 036216           47 WVFGLSRLHFLNLGYNNFQGP----IPEGLQNLTSLKHLGLPFNHFSSS----------VPKWFDRLTHLEHLSLSYNSL  112 (695)
Q Consensus        47 ~~~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~~~----------~p~~~~~l~~L~~L~Ls~n~l  112 (695)
                      .+.....|++|+|++|.+...    +...+...++|+.|+++++.....          +...+..+++|++|++++|.+
T Consensus        26 ~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i  105 (344)
T d2ca6a1          26 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF  105 (344)
T ss_dssp             HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred             HHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccc
Confidence            344556666666666665421    233455667777777766544321          123345667777888877776


Q ss_pred             Ccc----cchhhcCCCCCCEEEccCCcCcc
Q 036216          113 EGR----IPRSMARLCNLRRLYLGGAKLNQ  138 (695)
Q Consensus       113 ~~~----~~~~~~~l~~L~~L~L~~n~l~~  138 (695)
                      ...    +...+...++|++|++++|.+..
T Consensus       106 ~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~  135 (344)
T d2ca6a1         106 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGP  135 (344)
T ss_dssp             CTTTHHHHHHHHHHCTTCCEEECCSSCCHH
T ss_pred             ccccccchhhhhcccccchheecccccccc
Confidence            643    33445567778888888777643

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=8.5e-12  Score=108.06  Aligned_cols=108  Identities=21%  Similarity=0.233  Sum_probs=83.9

Q ss_pred             CCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCC-cCcccCCccCCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEE
Q 036216           27 STLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYN-NFQGPIPEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHL  105 (695)
Q Consensus        27 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  105 (695)
                      .....++.+++.+..  .|..+..+++|++|++++| .++.+.+++|.++++|++|++++|+++.+.|.+|..+++|++|
T Consensus         8 ~~~~~l~c~~~~~~~--~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L   85 (156)
T d2ifga3           8 HGSSGLRCTRDGALD--SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL   85 (156)
T ss_dssp             SSSSCEECCSSCCCT--TTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred             CCCCeEEecCCCCcc--CcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccce
Confidence            445567888877776  6777778888888888765 4776777788888888888888888887778888888888888


Q ss_pred             EcccCcCCcccchhhcCCCCCCEEEccCCcCc
Q 036216          106 SLSYNSLEGRIPRSMARLCNLRRLYLGGAKLN  137 (695)
Q Consensus       106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  137 (695)
                      +|++|+++...+..|.. .+|++|++++|++.
T Consensus        86 ~Ls~N~l~~l~~~~~~~-~~l~~L~L~~Np~~  116 (156)
T d2ifga3          86 NLSFNALESLSWKTVQG-LSLQELVLSGNPLH  116 (156)
T ss_dssp             ECCSSCCSCCCSTTTCS-CCCCEEECCSSCCC
T ss_pred             eccCCCCcccChhhhcc-ccccccccCCCccc
Confidence            88888888544444444 47888999888875

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.28  E-value=2.5e-14  Score=130.05  Aligned_cols=149  Identities=21%  Similarity=0.286  Sum_probs=114.1

Q ss_pred             CCcEEEcCCC--cCCCCCccCCCCCCCCCEEECCCCCCCCCCCchhhcCCCCCCEEEcCCCcCcccCCccCCCCCCCCEE
Q 036216            4 SLVELDLSNC--QLHHFPQLPVANFSTLTTLDLSHNQFDNSFVPAWVFGLSRLHFLNLGYNNFQGPIPEGLQNLTSLKHL   81 (695)
Q Consensus         4 ~L~~L~ls~~--~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   81 (695)
                      ..+.+++++.  .++.++ .++..+++|++|+|++|.|+.  ++ .+..+++|++|+|++|.++ .++..+..+++|++|
T Consensus        24 ~~~~~~l~~~~~~i~~l~-~sl~~L~~L~~L~Ls~n~I~~--i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L   98 (198)
T d1m9la_          24 EAEKVELHGMIPPIEKMD-ATLSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEEL   98 (198)
T ss_dssp             TCSCEECCBCCTTCCCCH-HHHHHTTTCCEEECSEEEESC--CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEE
T ss_pred             ccceeeeecccCchhhhh-hHHhcccccceeECcccCCCC--cc-cccCCccccChhhcccccc-ccccccccccccccc
Confidence            3556666654  244444 368889999999999999987  54 4889999999999999998 456556667789999


Q ss_pred             eCCCCCCCCCchhhhcCCCCCCEEEcccCcCCcccc-hhhcCCCCCCEEEccCCcCccccchhh------hhhhcccccc
Q 036216           82 GLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLEGRIP-RSMARLCNLRRLYLGGAKLNQEISEIL------EIFSGCVSNG  154 (695)
Q Consensus        82 ~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~------~~~~~~~~~~  154 (695)
                      ++++|.++. + ..+..+++|++|++++|.++.... ..+..+++|+.|++++|++....+...      ...+..+++ 
T Consensus        99 ~l~~N~i~~-l-~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~-  175 (198)
T d1m9la_          99 WISYNQIAS-L-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPN-  175 (198)
T ss_dssp             ECSEEECCC-H-HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSS-
T ss_pred             ccccccccc-c-ccccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCC-
Confidence            999999985 3 358889999999999999985322 578999999999999998865443321      112455555 


Q ss_pred             cceEEc
Q 036216          155 LESLAL  160 (695)
Q Consensus       155 L~~L~L  160 (695)
                      |+.|+-
T Consensus       176 L~~LD~  181 (198)
T d1m9la_         176 LKKLDG  181 (198)
T ss_dssp             CCEESS
T ss_pred             cCEeCC
Confidence            888863

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.28  E-value=1.5e-13  Score=124.73  Aligned_cols=130  Identities=20%  Similarity=0.265  Sum_probs=78.8

Q ss_pred             CChhhhhcCCCCcEEEcCCCcccccCCccccCCCCCCEEeCCCCcCcccCChhhhhcccCcccCCCCCCcccccCCCCCC
Q 036216          448 IPSWFGERFSRMVLLILRSNNFDGPLPTELCDLAFLQILDLADNNLSGTIPNCIHNLTAMATVNPFTGNAIEYSFPLNST  527 (695)
Q Consensus       448 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~l~~~~~~~l~~~~~~~~~  527 (695)
                      ++..+. .+++|+.|++++|+++. ++ .+..+++|++|++++|+++ .+|..+..++.                     
T Consensus        40 l~~sl~-~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~---------------------   94 (198)
T d1m9la_          40 MDATLS-TLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADT---------------------   94 (198)
T ss_dssp             CHHHHH-HTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHH---------------------
T ss_pred             hhhHHh-cccccceeECcccCCCC-cc-cccCCccccChhhcccccc-ccccccccccc---------------------
Confidence            334443 46666666666666653 32 4666677777777777665 33333222222                     


Q ss_pred             CCCCccccceEEEecCCcchhhhhcccccEEEcCCccccccCCccccCCCCCCEEeccCCcccccCC-ccccCcCCCCEE
Q 036216          528 IGPGTVTEQELVVTKGVAADYNEILNLVRIIDFSKNLFSGTLPMGLTNLKAVQSLNLSYNIFTGRIP-ETIGTMRSLESI  606 (695)
Q Consensus       528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L  606 (695)
                                                 |+.|++++|+++..  +.+..+++|++|++++|+++.... +.++.+++|+.|
T Consensus        95 ---------------------------L~~L~l~~N~i~~l--~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L  145 (198)
T d1m9la_          95 ---------------------------LEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDL  145 (198)
T ss_dssp             ---------------------------CCEEECSEEECCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEE
T ss_pred             ---------------------------cccccccccccccc--ccccccccccccccccchhccccccccccCCCcccee
Confidence                                       36677777777632  346667777777777777763221 356777777777


Q ss_pred             ECCCCcccccCCcC----------CcCCCCCCEEE
Q 036216          607 DFSVNKFTGEIPQS----------MSSLTFLNHLN  631 (695)
Q Consensus       607 ~Ls~n~l~~~~p~~----------l~~l~~L~~L~  631 (695)
                      ++++|.+....+..          +..+++|++||
T Consensus       146 ~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         146 LLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             EECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            77777776544432          45577777776

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.5e-11  Score=106.44  Aligned_cols=82  Identities=16%  Similarity=0.126  Sum_probs=67.5

Q ss_pred             cEEEcCCc-cccccCCccccCCCCCCEEeccCCcccccCCccccCcCCCCEEECCCCcccccCCcCCcCCCCCCEEEccc
Q 036216          556 RIIDFSKN-LFSGTLPMGLTNLKAVQSLNLSYNIFTGRIPETIGTMRSLESIDFSVNKFTGEIPQSMSSLTFLNHLNLSN  634 (695)
Q Consensus       556 ~~L~Ls~n-~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~  634 (695)
                      +.|++++| .++...+..|.++++|+.|++++|+|+...|++|..+++|++|+|++|+++. +|........|++|+|++
T Consensus        34 ~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~-l~~~~~~~~~l~~L~L~~  112 (156)
T d2ifga3          34 TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALES-LSWKTVQGLSLQELVLSG  112 (156)
T ss_dssp             SEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSC-CCSTTTCSCCCCEEECCS
T ss_pred             CeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcc-cChhhhccccccccccCC
Confidence            67777655 4776667789999999999999999998888889999999999999999994 554444445799999999


Q ss_pred             CcCc
Q 036216          635 NYLT  638 (695)
Q Consensus       635 N~l~  638 (695)
                      |++.
T Consensus       113 Np~~  116 (156)
T d2ifga3         113 NPLH  116 (156)
T ss_dssp             SCCC
T ss_pred             Cccc
Confidence            9985

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=5.8e-09  Score=90.56  Aligned_cols=66  Identities=24%  Similarity=0.294  Sum_probs=30.8

Q ss_pred             CCCCCCCEEeCCCCCCCCCc--hhhhcCCCCCCEEEcccCcCCcccchhhcCCCCCCEEEccCCcCcc
Q 036216           73 QNLTSLKHLGLPFNHFSSSV--PKWFDRLTHLEHLSLSYNSLEGRIPRSMARLCNLRRLYLGGAKLNQ  138 (695)
Q Consensus        73 ~~l~~L~~L~L~~n~l~~~~--p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  138 (695)
                      ..+++|++|+|++|+++...  +..+..+++|++|++++|.|+...+-.+.+..+|+.|++++|++..
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCc
Confidence            34455555555555554321  2334445555555555555553222222333345555555555543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=2.8e-08  Score=86.08  Aligned_cols=64  Identities=30%  Similarity=0.158  Sum_probs=27.0

Q ss_pred             CCCCCCEEEcCCCcCcccC--CccCCCCCCCCEEeCCCCCCCCCchhhhcCCCCCCEEEcccCcCC
Q 036216           50 GLSRLHFLNLGYNNFQGPI--PEGLQNLTSLKHLGLPFNHFSSSVPKWFDRLTHLEHLSLSYNSLE  113 (695)
Q Consensus        50 ~l~~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~  113 (695)
                      .+++|++|+|++|+|+...  +..+..+++|++|++++|.++...+-.+....+|+.|++++|.+.
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            3444445555555444321  122334444455555555444322222222334444444444444

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.94  E-value=7.2e-06  Score=70.81  Aligned_cols=88  Identities=14%  Similarity=0.122  Sum_probs=50.1

Q ss_pred             CCCCCCEEEcCCC-cCccc----CCccCCCCCCCCEEeCCCCCCCC----CchhhhcCCCCCCEEEcccCcCCcc----c
Q 036216           50 GLSRLHFLNLGYN-NFQGP----IPEGLQNLTSLKHLGLPFNHFSS----SVPKWFDRLTHLEHLSLSYNSLEGR----I  116 (695)
Q Consensus        50 ~l~~L~~L~Ls~n-~i~~~----~~~~~~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~Ls~n~l~~~----~  116 (695)
                      +.++|++|+|+++ .+...    +..++...++|++|++++|.+..    .+...+...+.|++|++++|.+...    +
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            4567777777764 34421    23345566677777777776653    2233444556667777776666532    2


Q ss_pred             chhhcCCCCCCEEEccCCcCc
Q 036216          117 PRSMARLCNLRRLYLGGAKLN  137 (695)
Q Consensus       117 ~~~~~~l~~L~~L~L~~n~l~  137 (695)
                      ..++...+.|++|++++|.+.
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSC
T ss_pred             HHHHHhCCcCCEEECCCCcCC
Confidence            334555566666666666443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.80  E-value=2.1e-05  Score=67.79  Aligned_cols=110  Identities=9%  Similarity=0.060  Sum_probs=61.8

Q ss_pred             CCCCCCEEECCCC-CCCCCCC---chhhcCCCCCCEEEcCCCcCccc----CCccCCCCCCCCEEeCCCCCCCCC----c
Q 036216           25 NFSTLTTLDLSHN-QFDNSFV---PAWVFGLSRLHFLNLGYNNFQGP----IPEGLQNLTSLKHLGLPFNHFSSS----V   92 (695)
Q Consensus        25 ~l~~L~~L~Ls~n-~i~~~~~---~~~~~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~   92 (695)
                      +.++|++|+|+++ .++....   -..+...++|++|+|++|.+...    +.+.+...+.|++|++++|.++..    +
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            3466777777763 3433211   11344566677777777776532    223444566777777777776642    2


Q ss_pred             hhhhcCCCCCCEEEcccCcCCcc-------cchhhcCCCCCCEEEccCC
Q 036216           93 PKWFDRLTHLEHLSLSYNSLEGR-------IPRSMARLCNLRRLYLGGA  134 (695)
Q Consensus        93 p~~~~~l~~L~~L~Ls~n~l~~~-------~~~~~~~l~~L~~L~L~~n  134 (695)
                      ..++...+.|++|++++|.+...       +...+...++|+.|+++.+
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            23455566677777776654421       2344445566666666554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.49  E-value=6e-05  Score=64.83  Aligned_cols=82  Identities=18%  Similarity=0.216  Sum_probs=41.2

Q ss_pred             CCCCCCEEEcCC-CcCccc----CCccCCCCCCCCEEeCCCCCCCCC----chhhhcCCCCCCEEEcccCcCCcc----c
Q 036216           50 GLSRLHFLNLGY-NNFQGP----IPEGLQNLTSLKHLGLPFNHFSSS----VPKWFDRLTHLEHLSLSYNSLEGR----I  116 (695)
Q Consensus        50 ~l~~L~~L~Ls~-n~i~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~  116 (695)
                      +.+.|++|+|++ +.++..    +..++...++|++|++++|.++..    +...+...+.++.+++++|.+...    +
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            456666666665 334321    223444556666666666665432    222334455566666666555421    2


Q ss_pred             chhhcCCCCCCEEEc
Q 036216          117 PRSMARLCNLRRLYL  131 (695)
Q Consensus       117 ~~~~~~l~~L~~L~L  131 (695)
                      ...+...++|+.++|
T Consensus        95 ~~~l~~~~~L~~l~L  109 (166)
T d1io0a_          95 VEALQSNTSLIELRI  109 (166)
T ss_dssp             HHGGGGCSSCCEEEC
T ss_pred             HHHHHhCccccEEee
Confidence            233444555554443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.44  E-value=4.6e-05  Score=65.60  Aligned_cols=110  Identities=16%  Similarity=0.129  Sum_probs=50.7

Q ss_pred             CCCCCCEEECCC-CCCCCCC---CchhhcCCCCCCEEEcCCCcCccc----CCccCCCCCCCCEEeCCCCCCCCC----c
Q 036216           25 NFSTLTTLDLSH-NQFDNSF---VPAWVFGLSRLHFLNLGYNNFQGP----IPEGLQNLTSLKHLGLPFNHFSSS----V   92 (695)
Q Consensus        25 ~l~~L~~L~Ls~-n~i~~~~---~~~~~~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~   92 (695)
                      +.+.|++|++++ +.++...   +-.++...++|++|++++|.+...    +.+.+...+.++.+++++|.+...    +
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            345566666655 2343211   111223455566666666655432    222334455666666666555432    2


Q ss_pred             hhhhcCCCCCCEEEcc--cCcCCc----ccchhhcCCCCCCEEEccCC
Q 036216           93 PKWFDRLTHLEHLSLS--YNSLEG----RIPRSMARLCNLRRLYLGGA  134 (695)
Q Consensus        93 p~~~~~l~~L~~L~Ls--~n~l~~----~~~~~~~~l~~L~~L~L~~n  134 (695)
                      ...+...+.|+.++|+  +|.+..    .+...+...+.|++|+++.+
T Consensus        95 ~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          95 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            2334455555554443  333432    22333445555555555544