Citrus Sinensis ID: 036220

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520--
LLLSASATTSASLLDNFSKCLSVNSELYVPSSTFFSQNNSSFSSILESSAQNLRYLVPSMPKPEFIFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETETPFIIVDLAKLRSVKVDIDDNSAWVQAGATIGEVYYRISEKSKTHGFPAGLCTSLGVGGHITGGAYGSMMRKYGLGADNVVDARIVDASGRILDREAMGEDFFWAIRGGGGASFGVILAWKIKLVPVPATVTVFTVTKTLEQCATKLLHRWQEVADKLDEDLFIRVIIQVANAGPKGEKTVTTSYNSLFLGGAERLLKVVEESFPELGLTKKDCTETSWIKSVLYIAGYPSNTPPEVLLQGKSLFKNYFKAKSDFVKDPIPETALEGLWKRLLGEDSPLMIWTPYGGMMSKISESEIPFPHRKGTLFKIQYVSTWQDGEKNATKHIDWIRRLYNYMGPYVSMLPRAAYVNYRDLDLGMNKNGSSFIKSSVWGYKYFKDNFNRLVKVKTKVDPDNFFRHEQSIPPLPLCSEHCLA
cEEEccccccccHHHHHHHHHHccccccccccccccccccccHHHHHHHHccccccccccccccEEEEEccHHHHHHHHHHHHHHccEEEEEEcccccccccccccccccEEEEEccccccEEEEccccEEEEcccccHHHHHHHHHHcccccccccccccccccccccccccccHHHHHcccccEEEEEEEEEEccccEEEccccccccEEEEEccccccEEEEEEEEEEEEccccEEEEEEEEccHHHHHHHHHHHHHHHHHccccccEEEEEEEEcccccccccEEEEEEEEEEEccHHHHHHHHHHHcccccccccccccccHHHHHHHHHcccccccccccccccccccccEEEEcccccccccHHHHHHHHHHHccccccEEEEEccccccccccccccccccccccEEEEEEEEEEccccHHHHHHHHHHHHHHHHHccccccccccEEEccccccccccccccccccccHHHHHcHHHHHHHHHHHHHHccccccccccccccccccccccccc
cEEEcccccccccHHHHHHHHHccccccccccEEEccccccHHHHHHHHHHccccccccccccEEEEEcccHHHHHEHEHHHHHcccEEEEEcccccccccEEEEcccccEEEEEcHHcccEEEEcccccEEEEccccHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHccccccEEEEEEEEccccEEcHHHHcccHHEEEEccccccEEEEEEEEEEEEccccEEEEEEEcccHHHcHHHHHHHHHHHHHcccccEEEEEEEEEccccccccEEEEEEEEEEEcccHHHHHHHHHHHccHccccHccHHHHHHHHHHHHHccccccccHHHHHccccccHHHHccccccccccccHHHHHHHHHHHHcccccEEEEcccccccccccccccccccccccEEEEEEEEEcccccHHHHHHHHHHHHHHHHcccccccccccEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHEEEEEcccccccccccccccccccccccccc
lllsasattsaSLLDNFSKclsvnselyvpsstffsqnnssfSSILESSAQNLRylvpsmpkpefiftplyEAHVQAAVICCKELGVHLrvrsgghdyeglsyvsetetPFIIVDLAKlrsvkvdiddnsawVQAGATIGEVYYRISekskthgfpaglctslgvgghitggaYGSMMRkyglgadnvvdarivdasgrildreamgEDFFwairggggasFGVILAWKiklvpvpatVTVFTVTKTLEQCATKLLHRWQEVADKLDEDLFIRVIIQVAnagpkgektvTTSYNSLFLGGAERLLKVVEEsfpelgltkkdctetswIKSVLYIagypsntppevlLQGKSLFKNYFKAksdfvkdpipetALEGLWKRllgedsplmiwtpyggmmskiseseipfphrkgtlfKIQYVSTWQDGEKNATKHIDWIRRLYNymgpyvsmlpraayvnyrdldlgmnkngssfiksSVWGYKYFKDNFNRLVKVKtkvdpdnffrheqsipplplcsehcla
lllsasattsaslldNFSKCLSVNSELYVPSSTFFSQNNSSFSSILESSAQNLRYLVPSMPKPEFIFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETETPFIIVDLAKLRSVKVDIDDNSAWVQAGATIGEVYYRISEKSKTHGFPAGLCTSLGVGGHITGGAYGSMMRKYGLGADNVVDARIVDASGRILDREAMGEDFFWAIRGGGGASFGVILAWKIKLVPVPATVTVFTVTKTLEQCATKLLHRWQEVADKLDEDLFIRVIIQvanagpkgektvTTSYNSLFLGGAERLLKVVEESFpelgltkkdctetsWIKSVLYIAGYPSNTPPEVLLQGKSLFKNYFKAKSDFVKDPIPETALEGLWKRLLGEDSPLMIWTPYGGMMSKISESEIPFPHRKGTLFKIQYVSTWQDGEKNATKHIDWIRRLYNYMGPYVSMLPRAAYVNYRDLDLGMNKNGSSFIKSSVWGYKYFKDNFNRLVKVKTKVDPDNFfrheqsipplplcsehcla
lllsasattsasllDNFSKCLSVNSELYVPsstffsqnnssfssilessAQNLRYLVPSMPKPEFIFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETETPFIIVDLAKLRSVKVDIDDNSAWVQAGATIGEVYYRISEKSKTHGFPAGLCTSLGVGGHITGGAYGSMMRKYGLGADNVVDARIVDASGRILDREAMGEDFFWAIRGGGGASFGVILAWKIKLvpvpatvtvftvtktLEQCATKLLHRWQEVADKLDEDLFIRVIIQVANAGPKGEKTVTTSYNSLFLGGAERLLKVVEESFPELGLTKKDCTETSWIKSVLYIAGYPSNTPPEVLLQGKSLFKNYFKAKSDFVKDPIPETALEGLWKRLLGEDSPLMIWTPYGGMMSKISESEIPFPHRKGTLFKIQYVSTWQDGEKNATKHIDWIRRLYNYMGPYVSMLPRAAYVNYRDLDLGMNKNGSSFIKSSVWGYKYFKDNFNRLVKVKTKVDPDNFFRHEQSIPPLPLCSEHCLA
*************LDNFSKCLSVNSELYVPSSTFF****************NLRYLVPSMPKPEFIFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETETPFIIVDLAKLRSVKVDIDDNSAWVQAGATIGEVYYRISEKSKTHGFPAGLCTSLGVGGHITGGAYGSMMRKYGLGADNVVDARIVDASGRILDREAMGEDFFWAIRGGGGASFGVILAWKIKLVPVPATVTVFTVTKTLEQCATKLLHRWQEVADKLDEDLFIRVIIQVANAGPKGEKTVTTSYNSLFLGGAERLLKVVEESFPELGLTKKDCTETSWIKSVLYIAGYPSNTPPEVLLQGKSLFKNYFKAKSDFVKDPIPETALEGLWKRLLGEDSPLMIWTPYGGMMSKISESEIPFPHRKGTLFKIQYVSTWQDGEKNATKHIDWIRRLYNYMGPYVSMLPRAAYVNYRDLDLGMNKNGSSFIKSSVWGYKYFKDNFNRLVKVKTKVDPDNFFRH****************
LLLSAS*TTSASLLDNFSKCLSVNSELYVPSSTFFSQNNSSFSSILESSAQNLRYLVPSMPKPEFIFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETETPFIIVDLAKLRSVKVDIDDNSAWVQAGATIGEVYYRISEKSKTHGFPAGLCTSLGVGGHITGGAYGSMMRKYGLGADNVVDARIVDASGRILDREAMGEDFFWAIRGGGGASFGVILAWKIKLVPVPATVTVFTVTKTLEQCATKLLHRWQEVADKLDEDLFIRVIIQVANAGPKGEKTVTTSYNSLFLGGAERLLKVVEESFPELGLTKKDCTETSWIKSVLYIAGYPSNTPPEVLLQGKSLFKNYFKAKSDFVKDPIPETALEGLWKRLLGEDSPLMIWTPYGGMMSKISESEIPFPHRKGTLFKIQYVSTWQDGEKNATKHIDWIRRLYNYMGPYVSMLPRAAYVNYRDLDLGMNKNGSSFIKSSVWGYKYFKDNFNRLVKVKTKVDPDNFFRHEQSIPP**********
*********SASLLDNFSKCLSVNSELYVPSSTFFSQNNSSFSSILESSAQNLRYLVPSMPKPEFIFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETETPFIIVDLAKLRSVKVDIDDNSAWVQAGATIGEVYYRISEKSKTHGFPAGLCTSLGVGGHITGGAYGSMMRKYGLGADNVVDARIVDASGRILDREAMGEDFFWAIRGGGGASFGVILAWKIKLVPVPATVTVFTVTKTLEQCATKLLHRWQEVADKLDEDLFIRVIIQVANAGPKGEKTVTTSYNSLFLGGAERLLKVVEESFPELGLTKKDCTETSWIKSVLYIAGYPSNTPPEVLLQGKSLFKNYFKAKSDFVKDPIPETALEGLWKRLLGEDSPLMIWTPYGGMMSKISESEIPFPHRKGTLFKIQYVSTWQDGEKNATKHIDWIRRLYNYMGPYVSMLPRAAYVNYRDLDLGMNKNGSSFIKSSVWGYKYFKDNFNRLVKVKTKVDPDNFFRHEQSIPPLPLCSEHCLA
LLLSASATTSASLLDNFSKCLSVNSELYVPSSTFFSQNNSSFSSILESSAQNLRYLVPSMPKPEFIFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETETPFIIVDLAKLRSVKVDIDDNSAWVQAGATIGEVYYRISEKSKTHGFPAGLCTSLGVGGHITGGAYGSMMRKYGLGADNVVDARIVDASGRILDREAMGEDFFWAIRGGGGASFGVILAWKIKLVPVPATVTVFTVTKTLEQCATKLLHRWQEVADKLDEDLFIRVIIQVANAGPKGEKTVTTSYNSLFLGGAERLLKVVEESFPELGLTKKDCTETSWIKSVLYIAGYPSNTPPEVLLQGKSLFKNYFKAKSDFVKDPIPETALEGLWKRLLGEDSPLMIWTPYGGMMSKISESEIPFPHRKGTLFKIQYVSTWQDGEKNATKHIDWIRRLYNYMGPYVSMLPRAAYVNYRDLDLGMNKNGSSFIKSSVWGYKYFKDNFNRLVKVKTKVDPDNFFRHEQSIPPLPLCSE*CL*
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LLLSASATTSASLLDNFSKCLSVNSELYVPSSTFFSQNNSSFSSILESSAQNLRYLVPSMPKPEFIFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETETPFIIVDLAKLRSVKVDIDDNSAWVQAGATIGEVYYRISEKSKTHGFPAGLCTSLGVGGHITGGAYGSMMRKYGLGADNVVDARIVDASGRILDREAMGEDFFWAIRGGGGASFGVILAWKIKLVPVPATVTVFTVTKTLEQCATKLLHRWQEVADKLDEDLFIRVIIQVANAGPKGEKTVTTSYNSLFLGGAERLLKVVEESFPELGLTKKDCTETSWIKSVLYIAGYPSNTPPEVLLQGKSLFKNYFKAKSDFVKDPIPETALEGLWKRLLGEDSPLMIWTPYGGMMSKISESEIPFPHRKGTLFKIQYVSTWQDGEKNATKHIDWIRRLYNYMGPYVSMLPRAAYVNYRDLDLGMNKNGSSFIKSSVWGYKYFKDNFNRLVKVKTKVDPDNFFRHEQSIPPLPLCSEHCLA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query522 2.2.26 [Sep-21-2011]
Q8GTB6545 Tetrahydrocannabinolic ac N/A no 0.952 0.911 0.472 1e-137
A6P6W1545 Cannabidiolic acid syntha N/A no 0.946 0.906 0.474 1e-137
A6P6W0545 Cannabidiolic acid syntha N/A no 0.946 0.906 0.476 1e-137
Q33DQ2545 Inactive tetrahydrocannab N/A no 0.952 0.911 0.476 1e-135
A6P6V9544 Cannabidiolic acid syntha N/A no 0.955 0.917 0.459 1e-135
Q9SVG4570 Reticuline oxidase-like p no no 0.955 0.875 0.476 1e-121
P30986538 Reticuline oxidase OS=Esc N/A no 0.913 0.886 0.433 1e-102
P93479535 Reticuline oxidase OS=Pap N/A no 0.959 0.936 0.415 1e-100
O06997447 Uncharacterized FAD-linke yes no 0.756 0.883 0.281 2e-23
Q796Y5451 Uncharacterized FAD-linke no no 0.743 0.860 0.266 4e-22
>sp|Q8GTB6|THCAS_CANSA Tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=1 SV=1 Back     alignment and function desciption
 Score =  489 bits (1260), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 246/521 (47%), Positives = 358/521 (68%), Gaps = 24/521 (4%)

Query: 11  ASLLDNFSKCLSVNSELYVPSST-----FFSQNNSSFSSILESSAQNLRYLVPSMPKPEF 65
           A+  +NF KC S     ++P++       ++Q++  + SIL S+ QNLR++  + PKP  
Sbjct: 28  ANPRENFLKCFSK----HIPNNVANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLV 83

Query: 66  IFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETETPFIIVDLAKLRSVKVD 125
           I TP   +H+QA ++C K++G+ +R RSGGHD EG+SY+S+   PF++VDL  + S+K+D
Sbjct: 84  IVTPSNNSHIQATILCSKKVGLQIRTRSGGHDAEGMSYISQV--PFVVVDLRNMHSIKID 141

Query: 126 IDDNSAWVQAGATIGEVYYRISEKSKTHGFPAGLCTSLGVGGHITGGAYGSMMRKYGLGA 185
           +   +AWV+AGAT+GEVYY I+EK++   FP G C ++GVGGH +GG YG++MR YGL A
Sbjct: 142 VHSQTAWVEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAA 201

Query: 186 DNVVDARIVDASGRILDREAMGEDFFWAIRGGGGASFGVILAWKIKLVPVPATVTVFTVT 245
           DN++DA +V+  G++LDR++MGED FWAIRGGGG +FG+I AWKIKLV VP+  T+F+V 
Sbjct: 202 DNIIDAHLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVK 261

Query: 246 KTLE-QCATKLLHRWQEVADKLDEDLFIR---VIIQVANAGPKGEKTVTTSYNSLFLGGA 301
           K +E     KL ++WQ +A K D+DL +    +   + +   K + TV   ++S+F GG 
Sbjct: 262 KNMEIHGLVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGV 321

Query: 302 ERLLKVVEESFPELGLTKKDCTETSWIKSVLYIAGY----PSNTPPEVLLQGKSLFKNYF 357
           + L+ ++ +SFPELG+ K DC E SWI + ++ +G      +N   E+LL   +  K  F
Sbjct: 322 DSLVDLMNKSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLDRSAGKKTAF 381

Query: 358 KAKSDFVKDPIPETALEGLWKRLLGED--SPLMIWTPYGGMMSKISESEIPFPHRKGTLF 415
             K D+VK PIPETA+  + ++L  ED  + + +  PYGG+M +ISES IPFPHR G ++
Sbjct: 382 SIKLDYVKKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEISESAIPFPHRAGIMY 441

Query: 416 KIQYVSTWQDGEKNATKHIDWIRRLYNYMGPYVSMLPRAAYVNYRDLDLGMNKNGS--SF 473
           ++ Y ++W+  E N  KHI+W+R +YN+  PYVS  PR AY+NYRDLDLG   + S  ++
Sbjct: 442 ELWYTASWEKQEDNE-KHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNY 500

Query: 474 IKSSVWGYKYFKDNFNRLVKVKTKVDPDNFFRHEQSIPPLP 514
            ++ +WG KYF  NFNRLVKVKTKVDP+NFFR+EQSIPPLP
Sbjct: 501 TQARIWGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPLP 541
Catalyzes the oxidative cyclization of the monoterpene moiety in cannabigerolic acid (CBGA), producing delta(9)-tetrahydrocannabinolate (THCA), the major cannabioid in drug-type Cannabis plants. Can also use cannabinerolic acid as substrate, but not cannabigerol or cannabinerol.
Cannabis sativa (taxid: 3483)
EC: 1EC: .EC: 2EC: 1EC: .EC: 3EC: .EC: 7
>sp|A6P6W1|CASL2_CANSA Cannabidiolic acid synthase-like 2 OS=Cannabis sativa GN=CBDAS3 PE=2 SV=1 Back     alignment and function description
>sp|A6P6W0|CASL1_CANSA Cannabidiolic acid synthase-like 1 OS=Cannabis sativa GN=CBDAS2 PE=2 SV=1 Back     alignment and function description
>sp|Q33DQ2|THCAI_CANSA Inactive tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=3 SV=1 Back     alignment and function description
>sp|A6P6V9|CBDAS_CANSA Cannabidiolic acid synthase OS=Cannabis sativa GN=CBDAS PE=1 SV=1 Back     alignment and function description
>sp|Q9SVG4|RETOL_ARATH Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2 Back     alignment and function description
>sp|P30986|RETO_ESCCA Reticuline oxidase OS=Eschscholzia californica GN=BBE1 PE=1 SV=1 Back     alignment and function description
>sp|P93479|RETO_PAPSO Reticuline oxidase OS=Papaver somniferum GN=BBE1 PE=3 SV=1 Back     alignment and function description
>sp|O06997|YVDP_BACSU Uncharacterized FAD-linked oxidoreductase YvdP OS=Bacillus subtilis (strain 168) GN=yvdP PE=1 SV=1 Back     alignment and function description
>sp|Q796Y5|YGAK_BACSU Uncharacterized FAD-linked oxidoreductase YgaK OS=Bacillus subtilis (strain 168) GN=ygaK PE=3 SV=4 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query522
225444135539 PREDICTED: reticuline oxidase-like prote 0.982 0.951 0.786 0.0
147846530539 hypothetical protein VITISV_003756 [Viti 0.982 0.951 0.786 0.0
356533127543 PREDICTED: reticuline oxidase-like prote 0.990 0.952 0.780 0.0
255564335548 Reticuline oxidase precursor, putative [ 0.967 0.921 0.804 0.0
356533129540 PREDICTED: reticuline oxidase-like prote 0.984 0.951 0.779 0.0
356555926543 PREDICTED: reticuline oxidase-like prote 0.990 0.952 0.770 0.0
224056801507 predicted protein [Populus trichocarpa] 0.967 0.996 0.777 0.0
255564331548 Reticuline oxidase precursor, putative [ 0.971 0.925 0.797 0.0
224115654545 predicted protein [Populus trichocarpa] 0.965 0.924 0.772 0.0
449435514546 PREDICTED: reticuline oxidase-like prote 0.969 0.926 0.750 0.0
>gi|225444135|ref|XP_002268361.1| PREDICTED: reticuline oxidase-like protein [Vitis vinifera] Back     alignment and taxonomy information
 Score =  862 bits (2227), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/516 (78%), Positives = 458/516 (88%), Gaps = 3/516 (0%)

Query: 1   LLLSASATTSASLLDNFSKCLSVNSELYVPSST-FFSQNNSSFSSILESSAQNLRYLVPS 59
           +LLSAS T S  +L+ FS+C+S+NSE+ +P ST F++ N +SFS+ L+SSAQNLRYLVPS
Sbjct: 14  ILLSASVTASDPILEKFSQCVSLNSEILIPVSTAFYTPNTTSFSAFLQSSAQNLRYLVPS 73

Query: 60  MPKPEFIFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETETPFIIVDLAKL 119
            PKPEFIFTP+++ HVQAAVIC K+L +H+RVRSGGHDYEGLSYVSE E PFI+VDLA+L
Sbjct: 74  APKPEFIFTPMHDTHVQAAVICSKQLSIHMRVRSGGHDYEGLSYVSEMEKPFIMVDLARL 133

Query: 120 RSVKVDIDDNSAWVQAGATIGEVYYRISEKSKTHGFPAGLCTSLGVGGHITGGAYGSMMR 179
           R +KVDIDDNSAWVQAGAT+GEVYYRI EKSKTHGFPAGLCTSLG+GGHITGGAYGSMMR
Sbjct: 134 RGIKVDIDDNSAWVQAGATVGEVYYRIYEKSKTHGFPAGLCTSLGIGGHITGGAYGSMMR 193

Query: 180 KYGLGADNVVDARIVDASGRILDREAMGEDFFWAIRGGGGASFGVILAWKIKLVPVPATV 239
           KYGLGADNV+DARIVD  GRILDRE+MGED FWAIRGGGGASFG+IL WKI+LVPVP+TV
Sbjct: 194 KYGLGADNVMDARIVDVHGRILDRESMGEDLFWAIRGGGGASFGIILWWKIRLVPVPSTV 253

Query: 240 TVFTVTKTLEQCATKLLHRWQEVADKLDEDLFIRVIIQVANAGPKGEKTVTTSYNSLFLG 299
           TVFTV + LEQ ATKLL+RWQ+VADKL EDLFIRVII V  A  KG KTV+ ++NSLFLG
Sbjct: 254 TVFTVGRALEQGATKLLYRWQQVADKLHEDLFIRVIISV-KANEKGNKTVSAAFNSLFLG 312

Query: 300 GAERLLKVVEESFPELGLTKKDCTETSWIKSVLYIAGYPSNTPPEVLLQGKSLFKNYFKA 359
           G +RLL+++ ESFPELGLT KDCTE SWI+SVLYI GYPS TPPEVLLQGKS FKNYFKA
Sbjct: 313 GVDRLLQIMGESFPELGLTMKDCTEMSWIRSVLYIGGYPSGTPPEVLLQGKSTFKNYFKA 372

Query: 360 KSDFVKDPIPETALEGLWKRLLGEDSPLMIWTPYGGMMSKISESEIPFPHRKGTLFKIQY 419
           KSDFVK+PIPE ALEGLW RLL E+SPLMIW PYGGMMSKISESEIPFPHRKG +FKIQ 
Sbjct: 373 KSDFVKEPIPENALEGLWTRLLEEESPLMIWNPYGGMMSKISESEIPFPHRKGNIFKIQL 432

Query: 420 VSTWQDGEKNATKHIDWIRRLYNYMGPYVSMLPRAAYVNYRDLDLGMNKN-GSSFIKSSV 478
           ++TWQDGEKN   H++WIRRLY YM PYVSM PRAAYVNYRDLDLG+NKN  +SFI++SV
Sbjct: 433 LTTWQDGEKNTKNHMEWIRRLYCYMTPYVSMFPRAAYVNYRDLDLGINKNSNTSFIQASV 492

Query: 479 WGYKYFKDNFNRLVKVKTKVDPDNFFRHEQSIPPLP 514
           WG KYFK NFNRLV VKTKVDPDNFFRHEQSIPP+P
Sbjct: 493 WGAKYFKGNFNRLVHVKTKVDPDNFFRHEQSIPPMP 528

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147846530|emb|CAN81654.1| hypothetical protein VITISV_003756 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356533127|ref|XP_003535119.1| PREDICTED: reticuline oxidase-like protein-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|255564335|ref|XP_002523164.1| Reticuline oxidase precursor, putative [Ricinus communis] gi|223537571|gb|EEF39195.1| Reticuline oxidase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356533129|ref|XP_003535120.1| PREDICTED: reticuline oxidase-like protein-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|356555926|ref|XP_003546280.1| PREDICTED: reticuline oxidase-like protein-like [Glycine max] Back     alignment and taxonomy information
>gi|224056801|ref|XP_002299030.1| predicted protein [Populus trichocarpa] gi|222846288|gb|EEE83835.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255564331|ref|XP_002523162.1| Reticuline oxidase precursor, putative [Ricinus communis] gi|223537569|gb|EEF39193.1| Reticuline oxidase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224115654|ref|XP_002317089.1| predicted protein [Populus trichocarpa] gi|222860154|gb|EEE97701.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449435514|ref|XP_004135540.1| PREDICTED: reticuline oxidase-like protein-like [Cucumis sativus] gi|449488542|ref|XP_004158078.1| PREDICTED: reticuline oxidase-like protein-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query522
TAIR|locus:2204579534 AT1G30760 [Arabidopsis thalian 0.944 0.923 0.668 3.3e-182
TAIR|locus:2044692532 MEE23 "MATERNAL EFFECT EMBRYO 0.944 0.926 0.66 6.1e-181
TAIR|locus:2158740537 AT5G44400 [Arabidopsis thalian 0.952 0.925 0.630 3.2e-175
TAIR|locus:2158730542 AT5G44390 [Arabidopsis thalian 0.955 0.920 0.590 3.9e-163
TAIR|locus:2158720541 AT5G44380 [Arabidopsis thalian 0.954 0.920 0.571 1.2e-161
TAIR|locus:2158700532 AT5G44360 [Arabidopsis thalian 0.940 0.922 0.490 3.9e-131
TAIR|locus:2133044530 AT4G20860 [Arabidopsis thalian 0.856 0.843 0.520 1.3e-130
TAIR|locus:2204604527 AT1G30700 [Arabidopsis thalian 0.954 0.944 0.482 3.5e-130
TAIR|locus:2121534532 AT4G20820 [Arabidopsis thalian 0.929 0.911 0.486 1.7e-128
TAIR|locus:2197935530 AT1G26390 [Arabidopsis thalian 0.877 0.864 0.480 1.9e-122
TAIR|locus:2204579 AT1G30760 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1768 (627.4 bits), Expect = 3.3e-182, P = 3.3e-182
 Identities = 334/500 (66%), Positives = 386/500 (77%)

Query:    16 NFSKCLSVNSELYVPXXXXXXXXXXXXXX---XXXXXAQNLRYLVPSMPKPEFIFTPLYE 72
             +F  CL  NS+   P                      AQNLRYL+PS PKPEFIF PLYE
Sbjct:    34 DFVMCLVDNSDASFPMDSSFFTHDLNASSFKLALETSAQNLRYLMPSNPKPEFIFEPLYE 93

Query:    73 AHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETETPFIIVDLAKLRSVKVDIDDNSAW 132
              HVQAAV+C K+L +HLR+RSGGHDYEGLSYVSE ET F+IVDL+KLR + VDI+ NSAW
Sbjct:    94 THVQAAVLCAKKLKLHLRLRSGGHDYEGLSYVSEMETAFVIVDLSKLRQISVDIESNSAW 153

Query:   133 VQAGATIGEVYYRISEKSKTHGFPAGLCTSLGVGGHITGGAYGSMMRKYGLGADNVVDAR 192
             V AGA+IGEVYYRI EKSK HGFPAGLCTSLG+GGHI GGAYGSMMRK+GLGADNV+DAR
Sbjct:   154 VHAGASIGEVYYRIQEKSKIHGFPAGLCTSLGIGGHIIGGAYGSMMRKFGLGADNVLDAR 213

Query:   193 IVDASGRILDREAMGEDFFWAIRGGGGASFGVILAWKIKLXXXXXXXXXXXXXXXLEQCA 252
             IVDA G+IL+R AMGED FWAIRGGGG SFGVILAWKIKL               LEQ  
Sbjct:   214 IVDADGKILNRAAMGEDVFWAIRGGGGGSFGVILAWKIKLVPVPEIVTVFTVTRTLEQDG 273

Query:   253 TKLLHRWQEVADKLDEDLFIRVIIQVANAGPKG-EKTVTTSYNSLFLGGAERLLKVVEES 311
             TKLL++WQ+VADKLDEDLFIRVIIQ  +  PK  E+T++TSY   FLG A RLL+V++ S
Sbjct:   274 TKLLYKWQQVADKLDEDLFIRVIIQPTSKTPKSKERTISTSYQGQFLGDANRLLQVMQRS 333

Query:   312 FPELGLTKKDCTETSWIKSVLYIAGYPSNTPPEVLLQGKSLFKNYFKAKSDFVKDPIPET 371
             FP+LGLTKKDC ETSWIKSV+YIAG+PS  P E LL GKSLFKNYFKAKSD+V++PIP  
Sbjct:   334 FPQLGLTKKDCLETSWIKSVMYIAGFPSTAPSEALLDGKSLFKNYFKAKSDYVEEPIPVE 393

Query:   372 ALEGLWKRLLGEDSPLMIWTPYGGMMSKISESEIPFPHRKGTLFKIQYVSTWQDGEKNAT 431
              LEGLW++LL EDSPL IW PYGGMM+KI E+E PFPHR GTLFKIQ+++ WQDG+ +  
Sbjct:   394 GLEGLWEKLLEEDSPLTIWNPYGGMMAKIPETETPFPHRSGTLFKIQWLTLWQDGKTSEA 453

Query:   432 KHIDWIRRLYNYMGPYVSMLPRAAYVNYRDLDLGMNKNGSSFIKSSVWGYKYFKDNFNRL 491
             KH+ W+R +Y+YM  YVS  PR+AYVNYRDLDLGMN  GS    +  WG +YFK NF RL
Sbjct:   454 KHMGWMREMYSYMEQYVSKSPRSAYVNYRDLDLGMNGKGSD---AREWGNRYFKGNFERL 510

Query:   492 VKVKTKVDPDNFFRHEQSIP 511
             V++K K DP+NFFRHEQSIP
Sbjct:   511 VEIKAKFDPENFFRHEQSIP 530
GO:0003824 "catalytic activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA
GO:0009055 "electron carrier activity" evidence=ISS
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA
GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
TAIR|locus:2044692 MEE23 "MATERNAL EFFECT EMBRYO ARREST 23" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158740 AT5G44400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158730 AT5G44390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158720 AT5G44380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158700 AT5G44360 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2133044 AT4G20860 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204604 AT1G30700 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121534 AT4G20820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197935 AT1G26390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.21.3LOW CONFIDENCE prediction!
3rd Layer1.21.3.3LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00029820001
SubName- Full=Chromosome chr10 scaffold_50, whole genome shotgun sequence; (539 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query522
pfam01565139 pfam01565, FAD_binding_4, FAD binding domain 5e-29
COG0277459 COG0277, GlcD, FAD/FMN-containing dehydrogenases [ 1e-26
pfam0803145 pfam08031, BBE, Berberine and berberine like 3e-21
TIGR01678438 TIGR01678, FAD_lactone_ox, sugar 1,4-lactone oxida 5e-07
PLN02805555 PLN02805, PLN02805, D-lactate dehydrogenase [cytoc 4e-05
TIGR00387413 TIGR00387, glcD, glycolate oxidase, subunit GlcD 2e-04
TIGR01679419 TIGR01679, bact_FAD_ox, FAD-linked oxidoreductase 4e-04
>gnl|CDD|216574 pfam01565, FAD_binding_4, FAD binding domain Back     alignment and domain information 
 Score =  111 bits (279), Expect = 5e-29
 Identities = 41/141 (29%), Positives = 68/141 (48%), Gaps = 5/141 (3%)

Query: 63  PEFIFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETETPFIIVDLAKL-RS 121
           P  +  P  E  V A V    E G+ + VR GG    G + ++      +++DL++L   
Sbjct: 1   PAAVVRPESEEEVAAIVRLANENGLPVLVRGGGSSLLGDAVLTGG----VVLDLSRLNGI 56

Query: 122 VKVDIDDNSAWVQAGATIGEVYYRISEKSKTHGFPAGLCTSLGVGGHITGGAYGSMMRKY 181
           +++D +D +A V+AG T+G++   ++ K    G   G      VGG I     G    +Y
Sbjct: 57  LEIDPEDGTATVEAGVTLGDLVRALAAKGLLLGLEPGSGIPGTVGGAIATNGGGYGSERY 116

Query: 182 GLGADNVVDARIVDASGRILD 202
           GL  DNV+   +V A G ++ 
Sbjct: 117 GLTRDNVLSLEVVLADGEVVR 137

This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. Length = 139
>gnl|CDD|223354 COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|219706 pfam08031, BBE, Berberine and berberine like Back     alignment and domain information
>gnl|CDD|233525 TIGR01678, FAD_lactone_ox, sugar 1,4-lactone oxidases Back     alignment and domain information
>gnl|CDD|178402 PLN02805, PLN02805, D-lactate dehydrogenase [cytochrome] Back     alignment and domain information
>gnl|CDD|129482 TIGR00387, glcD, glycolate oxidase, subunit GlcD Back     alignment and domain information
>gnl|CDD|130740 TIGR01679, bact_FAD_ox, FAD-linked oxidoreductase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 522
PLN02441525 cytokinin dehydrogenase 100.0
TIGR01678438 FAD_lactone_ox sugar 1,4-lactone oxidases. This mo 100.0
PRK11230499 glycolate oxidase subunit GlcD; Provisional 100.0
COG0277459 GlcD FAD/FMN-containing dehydrogenases [Energy pro 100.0
TIGR01679419 bact_FAD_ox FAD-linked oxidoreductase. This model 100.0
PLN02805555 D-lactate dehydrogenase [cytochrome] 100.0
TIGR01676541 GLDHase galactonolactone dehydrogenase. This model 100.0
TIGR01677557 pln_FAD_oxido plant-specific FAD-dependent oxidore 99.97
TIGR00387413 glcD glycolate oxidase, subunit GlcD. This protein 99.97
PRK11282352 glcE glycolate oxidase FAD binding subunit; Provis 99.97
KOG1231505 consensus Proteins containing the FAD binding doma 99.97
PLN02465573 L-galactono-1,4-lactone dehydrogenase 99.96
PF01565139 FAD_binding_4: FAD binding domain This is only a s 99.94
PRK13905298 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.91
PRK11183564 D-lactate dehydrogenase; Provisional 99.91
PRK14652302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.88
PRK12436305 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.88
TIGR00179284 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.87
KOG4730518 consensus D-arabinono-1, 4-lactone oxidase [Defens 99.87
PRK13903363 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.87
PRK13906307 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.87
KOG1232511 consensus Proteins containing the FAD binding doma 99.86
KOG1233613 consensus Alkyl-dihydroxyacetonephosphate synthase 99.85
PRK14649295 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.83
PRK14653297 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.78
COG0812291 MurB UDP-N-acetylmuramate dehydrogenase [Cell enve 99.76
PRK14650302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.74
PRK00046334 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.72
PRK14648354 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.69
PF0803147 BBE: Berberine and berberine like ; InterPro: IPR0 99.64
PRK14651273 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.59
KOG1262543 consensus FAD-binding protein DIMINUTO [General fu 99.45
PRK13904257 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.32
PF00941171 FAD_binding_5: FAD binding domain in molybdopterin 96.12
TIGR02963467 xanthine_xdhA xanthine dehydrogenase, small subuni 95.64
PRK09971291 xanthine dehydrogenase subunit XdhB; Provisional 95.35
TIGR03312257 Se_sel_red_FAD probable selenate reductase, FAD-bi 95.0
PRK09799258 putative oxidoreductase; Provisional 94.69
PF09265281 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and c 92.77
PLN02906 1319 xanthine dehydrogenase 92.08
TIGR03195321 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta s 89.91
PLN00107257 FAD-dependent oxidoreductase; Provisional 89.7
PF02913248 FAD-oxidase_C: FAD linked oxidases, C-terminal dom 87.9
TIGR03199264 pucC xanthine dehydrogenase C subunit. This gene h 87.72
COG4630493 XdhA Xanthine dehydrogenase, iron-sulfur cluster a 86.19
PF04030259 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: I 86.16
PLN00192 1344 aldehyde oxidase 81.03
>PLN02441 cytokinin dehydrogenase Back     alignment and domain information 
Probab=100.00  E-value=1.8e-37  Score=327.69  Aligned_cols=189  Identities=21%  Similarity=0.268  Sum_probs=167.8

Q ss_pred             ccCCCCCCCceEEEecCCHHHHHHHHHHHH--HcCCeEEEEeCCCCCCCCcccCCCCCCeEEEEcCCCCC------e-EE
Q 036220           54 RYLVPSMPKPEFIFTPLYEAHVQAAVICCK--ELGVHLRVRSGGHDYEGLSYVSETETPFIIVDLAKLRS------V-KV  124 (522)
Q Consensus        54 r~~~~~~~~p~~vv~P~t~~dv~~~v~~a~--~~~~~v~~~ggGh~~~~~~~~~d~~~~givIdl~~l~~------i-~~  124 (522)
                      .|.......|.+|++|+|++||+++|++|+  +++++|++||+||++.|.+...    +|++|||++||+      + ++
T Consensus        56 d~g~~~~~~P~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~rGgGHS~~G~a~~~----~GivIdms~Ln~i~~~~~ii~v  131 (525)
T PLN02441         56 DFGNLVHSLPAAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSLNGQAQAP----GGVVVDMRSLRGGVRGPPVIVV  131 (525)
T ss_pred             CcccccCCCCCEEEeCCCHHHHHHHHHHHhhccCCceEEEECCCcCCCCCccCC----CeEEEECCCCCCcCccCceEEE
Confidence            577777789999999999999999999997  6699999999999999888765    589999999999      3 78


Q ss_pred             eCCCCEEEEcCCCcHHHHHHHHHhcCCcceecCCCCCCccchhhhhCCCCCCcccccCccccceeEEEEEccCCcEec-c
Q 036220          125 DIDDNSAWVQAGATIGEVYYRISEKSKTHGFPAGLCTSLGVGGHITGGAYGSMMRKYGLGADNVVDARIVDASGRILD-R  203 (522)
Q Consensus       125 d~~~~~v~v~aG~~~~~l~~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vv~~~G~~~~-~  203 (522)
                      |.+..+|+|++|++|.++.+++.++|+. ....+....++|||++++||.|..+.+||..+|+|+++|||+++|++++ +
T Consensus       132 d~~~~~VtV~aG~~~~dv~~~l~~~Gla-P~~~~d~~~~TVGG~ist~G~gg~s~ryG~~~d~Vl~leVVtadGevv~~s  210 (525)
T PLN02441        132 SGDGPYVDVSGGELWIDVLKATLKHGLA-PRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLELDVVTGKGEVVTCS  210 (525)
T ss_pred             cCCCCEEEEcCCCCHHHHHHHHHHCCCc-cCCccccCceEEeEEcCCCCccccccccCcHHHhEEEEEEEeCCceEEEeC
Confidence            8889999999999999999999998742 1223566678999999999999999999999999999999999999997 6


Q ss_pred             cCCCcchhhhhhccCCCceEEEEEEEEEEEecCceEEEEEEEech
Q 036220          204 EAMGEDFFWAIRGGGGASFGVILAWKIKLVPVPATVTVFTVTKTL  248 (522)
Q Consensus       204 ~~~~~dl~~a~rg~~~g~~Givt~~~lk~~p~p~~~~~~~~~~~~  248 (522)
                      +.+|+|||||+|||+ |+|||||+++||++|.|+.+..+.+.+..
T Consensus       211 ~~~n~DLF~Av~Ggl-G~fGIIT~atlrL~Pap~~v~~~~~~y~~  254 (525)
T PLN02441        211 PTQNSDLFFAVLGGL-GQFGIITRARIALEPAPKRVRWIRVLYSD  254 (525)
T ss_pred             CCCChhHHHhhccCC-CCcEEEEEEEEEEEecCCceEEEEEEcCC
Confidence            677999999999988 89999999999999999977666666653

>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases Back     alignment and domain information
>PRK11230 glycolate oxidase subunit GlcD; Provisional Back     alignment and domain information
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase Back     alignment and domain information
>PLN02805 D-lactate dehydrogenase [cytochrome] Back     alignment and domain information
>TIGR01676 GLDHase galactonolactone dehydrogenase Back     alignment and domain information
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase Back     alignment and domain information
>TIGR00387 glcD glycolate oxidase, subunit GlcD Back     alignment and domain information
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional Back     alignment and domain information
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>PLN02465 L-galactono-1,4-lactone dehydrogenase Back     alignment and domain information
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK11183 D-lactate dehydrogenase; Provisional Back     alignment and domain information
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase Back     alignment and domain information
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms] Back     alignment and domain information
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only] Back     alignment and domain information
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids Back     alignment and domain information
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only] Back     alignment and domain information
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain Back     alignment and domain information
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit Back     alignment and domain information
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional Back     alignment and domain information
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit Back     alignment and domain information
>PRK09799 putative oxidoreductase; Provisional Back     alignment and domain information
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold Back     alignment and domain information
>PLN02906 xanthine dehydrogenase Back     alignment and domain information
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit Back     alignment and domain information
>PLN00107 FAD-dependent oxidoreductase; Provisional Back     alignment and domain information
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>TIGR03199 pucC xanthine dehydrogenase C subunit Back     alignment and domain information
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism] Back     alignment and domain information
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1 Back     alignment and domain information
>PLN00192 aldehyde oxidase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query522
3vte_A518 Crystal Structure Of Tetrahydrocannabinolic Acid Sy 1e-128
4dns_A497 Crystal Structure Of Bermuda Grass Isoallergen Bg60 1e-116
3tsh_A500 Crystal Structure Of Phl P 4, A Grass Pollen Allerg 1e-109
3d2d_A538 Structure Of Berberine Bridge Enzyme In Complex Wit 4e-92
4ec3_A519 Structure Of Berberine Bridge Enzyme, H174a Variant 4e-92
3gsy_A519 Structure Of Berberine Bridge Enzyme In Complex Wit 4e-92
3fw9_A495 Structure Of Berberine Bridge Enzyme In Complex Wit 5e-92
3fw8_A495 Structure Of Berberine Bridge Enzyme, C166a Variant 5e-91
3fw7_A498 Structure Of Berberine Bridge Enzyme, H104a Variant 6e-91
3fwa_A497 Structure Of Berberine Bridge Enzyme, C166a Variant 6e-91
2y08_A530 Structure Of The Substrate-Free Fad-Dependent Tiran 5e-19
3rj8_A473 Crystal Structure Of Carbohydrate Oxidase From Micr 9e-19
2ipi_A521 Crystal Structure Of Aclacinomycin Oxidoreductase L 3e-18
3pop_A501 The Crystal Structure Of Gilr, An Oxidoreductase Th 1e-15
2wdw_A523 The Native Crystal Structure Of The Primary Hexose 3e-15
2bvf_A459 Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase Fr 1e-14
1zr6_A503 The Crystal Structure Of An Acremonium Strictum Glu 2e-10
3hsu_A503 Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-H 3e-09
3pm9_A476 Crystal Structure Of A Putative Dehydrogenase (Rpa1 5e-05
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa Length = 518 Back     alignment and structure 
Iteration: 1

 Score =  454 bits (1168), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 227/476 (47%), Positives = 324/476 (68%), Gaps = 15/476 (3%)
Query: 51  QNLRYLVPSMPKPEFIFTPLYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETETP 110
           QNLR++  + PKP  I TP   +H+QA ++C K++G+ +R RSGGHD EG+SY+S+   P
Sbjct: 42  QNLRFISDTTPKPLVIVTPSNNSHIQATILCSKKVGLQIRTRSGGHDAEGMSYISQV--P 99
Query: 111 FIIVDLAKLRSVKVDIDDNSAWVQAGATIGEVYYRISEKSKTHGFPAGLCTSLGVGGHIT 170
           F++VDL  + S+K+D+   +AWV+AGAT+GEVYY I+EK++   FP G C ++GVGGH +
Sbjct: 100 FVVVDLRNMHSIKIDVHSQTAWVEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFS 159
Query: 171 GGAYGSMMRKYGLGADNVVDARIVDASGRILDREAMGEDFFWAIRGGGGASFGVILAWKI 230
           GG YG++MR YGL ADN++DA +V+  G++LDR++MGED FWAIRGGGG +FG+I AWKI
Sbjct: 160 GGGYGALMRNYGLAADNIIDAHLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKI 219
Query: 231 KLXXXXXXXXXXXXXXXLE-QCATKLLHRWQEVADKLDEDLFIR---VIIQVANAGPKGE 286
           KL               +E     KL ++WQ +A K D+DL +    +   + +   K +
Sbjct: 220 KLVAVPSKSTIFSVKKNMEIHGLVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNK 279
Query: 287 KTVTTSYNSLFLGGAERLLKVVEESFPELGLTKKDCTETSWIKSVLYIAGY----PSNTP 342
            TV   ++S+F GG + L+ ++ +SFPELG+ K DC E SWI + ++ +G      +N  
Sbjct: 280 TTVHGYFSSIFHGGVDSLVDLMNKSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFK 339
Query: 343 PEVLLQGKSLFKNYFKAKSDFVKDPIPETALEGLWKRLLGED--SPLMIWTPYGGMMSKI 400
            E+LL   +  K  F  K D+VK PIPETA+  + ++L  ED  + + +  PYGG+M +I
Sbjct: 340 KEILLDRSAGKKTAFSIKLDYVKKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEI 399
Query: 401 SESEIPFPHRKGTLFKIQYVSTWQDGEKNATKHIDWIRRLYNYMGPYVSMLPRAAYVNYR 460
           SES IPFPHR G ++++ Y ++W+  E N  KHI+W+R +YN+  PYVS  PR AY+NYR
Sbjct: 400 SESAIPFPHRAGIMYELWYTASWEKQEDNE-KHINWVRSVYNFTTPYVSQNPRLAYLNYR 458
Query: 461 DLDLGMNKNGS--SFIKSSVWGYKYFKDNFNRLVKVKTKVDPDNFFRHEQSIPPLP 514
           DLDLG   + S  ++ ++ +WG KYF  NFNRLVKVKTKVDP+NFFR+EQSIPPLP
Sbjct: 459 DLDLGKTNHASPNNYTQARIWGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPLP 514
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens Length = 497 Back     alignment and structure
>pdb|3TSH|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity Length = 500 Back     alignment and structure
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Reticuline Length = 538 Back     alignment and structure
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In Complex With (S)-Reticuline Length = 519 Back     alignment and structure
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With Dehydroscoulerine Length = 519 Back     alignment and structure
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Scoulerine Length = 495 Back     alignment and structure
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant Length = 495 Back     alignment and structure
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant Length = 498 Back     alignment and structure
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In Complex With (S)-Reticuline Length = 497 Back     alignment and structure
>pdb|2Y08|A Chain A, Structure Of The Substrate-Free Fad-Dependent Tirandamycin Oxidase Taml Length = 530 Back     alignment and structure
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From Microdochium Nivale Length = 473 Back     alignment and structure
>pdb|2IPI|A Chain A, Crystal Structure Of Aclacinomycin Oxidoreductase Length = 521 Back     alignment and structure
>pdb|3POP|A Chain A, The Crystal Structure Of Gilr, An Oxidoreductase That Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis Length = 501 Back     alignment and structure
>pdb|2WDW|A Chain A, The Native Crystal Structure Of The Primary Hexose Oxidase ( Dbv29) In Antibiotic A40926 Biosynthesis Length = 523 Back     alignment and structure
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From Arthrobacter Nicotinovorans. Crystal Form 3 (P1) Length = 459 Back     alignment and structure
>pdb|1ZR6|A Chain A, The Crystal Structure Of An Acremonium Strictum Glucooligosaccharide Oxidase Reveals A Novel Flavinylation Length = 503 Back     alignment and structure
>pdb|3HSU|A Chain A, Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-Histidyl Fad In Glucooligosaccharide Oxidase From Acremonium Strictum Length = 503 Back     alignment and structure
>pdb|3PM9|A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution Length = 476 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query522
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 0.0
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 0.0
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 0.0
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 1e-178
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 1e-178
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 1e-177
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 1e-173
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 1e-171
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 1e-125
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 7e-48
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 5e-36
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 6e-20
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 2e-17
2i0k_A561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 3e-17
3js8_A540 Cholesterol oxidase; cholsterol, organic solvent s 9e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-13
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 9e-08
2uuu_A584 Alkyldihydroxyacetonephosphate synthase; transfera 2e-07
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 5e-06
1f0x_A571 DLDH, D-lactate dehydrogenase; oxidoreductase; HET 4e-05
3tx1_A322 UDP-N-acetylenolpyruvoylglucosamine reductase; str 3e-04
1hsk_A326 UDP-N-acetylenolpyruvoylglucosamine reductase; pep 5e-04
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Length = 518 Back     alignment and structure
 Score =  602 bits (1554), Expect = 0.0
 Identities = 245/519 (47%), Positives = 352/519 (67%), Gaps = 16/519 (3%)

Query: 11  ASLLDNFSKCLSVNSELYVP-SSTFFSQNNSSFSSILESSAQNLRYLVPSMPKPEFIFTP 69
           A+  +NF KC S +    V      ++Q++  + SIL S+ QNLR++  + PKP  I TP
Sbjct: 1   ANPRENFLKCFSKHIPNNVANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTP 60

Query: 70  LYEAHVQAAVICCKELGVHLRVRSGGHDYEGLSYVSETETPFIIVDLAKLRSVKVDIDDN 129
              +H+QA ++C K++G+ +R RSGGHD EG+SY+  ++ PF++VDL  + S+K+D+   
Sbjct: 61  SNNSHIQATILCSKKVGLQIRTRSGGHDAEGMSYI--SQVPFVVVDLRNMHSIKIDVHSQ 118

Query: 130 SAWVQAGATIGEVYYRISEKSKTHGFPAGLCTSLGVGGHITGGAYGSMMRKYGLGADNVV 189
           +AWV+AGAT+GEVYY I+EK++   FP G C ++GVGGH +GG YG++MR YGL ADN++
Sbjct: 119 TAWVEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNII 178

Query: 190 DARIVDASGRILDREAMGEDFFWAIRGGGGASFGVILAWKIKLVPVPATVTVFTVTKTLE 249
           DA +V+  G++LDR++MGED FWAIRGGGG +FG+I AWKIKLV VP+  T+F+V K +E
Sbjct: 179 DAHLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNME 238

Query: 250 QC-ATKLLHRWQEVADKLDEDLFIRVIIQVANAGP---KGEKTVTTSYNSLFLGGAERLL 305
                KL ++WQ +A K D+DL +       N      K + TV   ++S+F GG + L+
Sbjct: 239 IHGLVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLV 298

Query: 306 KVVEESFPELGLTKKDCTETSWIKSVLYIAGY----PSNTPPEVLLQGKSLFKNYFKAKS 361
            ++ +SFPELG+ K DC E SWI + ++ +G      +N   E+LL   +  K  F  K 
Sbjct: 299 DLMNKSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLDRSAGKKTAFSIKL 358

Query: 362 DFVKDPIPETALEGLWKRLLGEDSP--LMIWTPYGGMMSKISESEIPFPHRKGTLFKIQY 419
           D+VK PIPETA+  + ++L  ED    + +  PYGG+M +ISES IPFPHR G ++++ Y
Sbjct: 359 DYVKKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEISESAIPFPHRAGIMYELWY 418

Query: 420 VSTWQDGEKNATKHIDWIRRLYNYMGPYVSMLPRAAYVNYRDLDLGMNKNGS--SFIKSS 477
            ++W+  E +  KHI+W+R +YN+  PYVS  PR AY+NYRDLDLG   + S  ++ ++ 
Sbjct: 419 TASWEKQE-DNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQAR 477

Query: 478 VWGYKYFKDNFNRLVKVKTKVDPDNFFRHEQSIPPLPLC 516
           +WG KYF  NFNRLVKVKTKVDP+NFFR+EQSIPPLP  
Sbjct: 478 IWGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPLPPH 516
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 3fw8_A* 3fw7_A* 3fwa_A* Length = 495 Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Length = 503 Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Length = 521 Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Length = 473 Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Length = 523 Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Length = 501 Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Length = 530 Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Length = 459 Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Length = 524 Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Length = 534 Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Length = 422 Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* Length = 481 Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Length = 561 Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Length = 540 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Length = 560 Back     alignment and structure
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Length = 584 Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Length = 520 Back     alignment and structure
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Length = 571 Back     alignment and structure
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: FAD; 2.69A {Listeria monocytogenes} Length = 322 Back     alignment and structure
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1 Length = 326 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query522
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 100.0
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 100.0
3tsh_A500 Pollen allergen PHL P 4; flavoprotein, BI-covalent 100.0
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 100.0
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 100.0
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 100.0
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 100.0
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 100.0
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 100.0
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 100.0
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 100.0
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 100.0
3pm9_A476 Putative oxidoreductase; putative D-2-hydroxygluta 100.0
4bby_A658 Alkyldihydroxyacetonephosphate synthase, peroxiso; 100.0
2uuu_A584 Alkyldihydroxyacetonephosphate synthase; transfera 99.98
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 99.97
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 99.97
2i0k_A561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 99.96
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 99.96
3js8_A540 Cholesterol oxidase; cholsterol, organic solvent s 99.96
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 99.96
1f0x_A571 DLDH, D-lactate dehydrogenase; oxidoreductase; HET 99.95
3tx1_A322 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.93
3i99_A357 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.92
1hsk_A326 UDP-N-acetylenolpyruvoylglucosamine reductase; pep 99.92
1uxy_A340 MURB, uridine diphospho-N-acetylenolpyruvylglucosa 99.91
2gqt_A268 UDP-N-acetylenolpyruvylglucosamine reductase; pept 99.87
2yvs_A219 Glycolate oxidase subunit GLCE; oxidoreductase; 2. 99.79
1ffv_C287 CUTM, flavoprotein of carbon monoxide dehydrogenas 98.42
1n62_C288 Carbon monoxide dehydrogenase medium chain; CODH, 97.74
2w3s_A462 Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2 97.54
3nvz_B305 Xanthine dehydrogenase/oxidase; hydroxylase, homod 96.84
1t3q_C288 Quinoline 2-oxidoreductase medium subunit; QOR, mo 96.61
3hrd_C296 Nicotinate dehydrogenase FAD-subunit; selenium lig 92.89
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 92.65
1rm6_B324 4-hydroxybenzoyl-COA reductase beta subunit; xanth 89.74
4bby_A658 Alkyldihydroxyacetonephosphate synthase, peroxiso; 88.92
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 86.39
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Back     alignment and structure
Probab=100.00  E-value=3.7e-88  Score=721.52  Aligned_cols=500  Identities=49%  Similarity=0.947  Sum_probs=425.5

Q ss_pred             ccccHHhhhcccCCCCCCCcc-eecCCCccchhHHhhcccccccCCCCCCCceEEEecCCHHHHHHHHHHHHHcCCeEEE
Q 036220           13 LLDNFSKCLSVNSELYVPSST-FFSQNNSSFSSILESSAQNLRYLVPSMPKPEFIFTPLYEAHVQAAVICCKELGVHLRV   91 (522)
Q Consensus        13 ~~~~l~~c~~~~~~~~~~~~~-v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~P~t~~dv~~~v~~a~~~~~~v~~   91 (522)
                      ..++|.+||+....++.++++ |++|+|+.|+.++.++.+|.||+......|.+||+|+|++||+++|++|+++++||.+
T Consensus         3 ~~~~f~~c~~~~~~~~~~~~~~v~~p~~~~y~~~~~~~~~n~rw~~~~~~~P~~vv~P~s~~dV~~~v~~a~~~~~~v~v   82 (518)
T 3vte_A            3 PRENFLKCFSKHIPNNVANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTPSNNSHIQATILCSKKVGLQIRT   82 (518)
T ss_dssp             HHHHHHHHHHHHCCC----CCCEECTTSTTHHHHHHHTCCBGGGCSSSSCCCSEEECCCSHHHHHHHHHHHHHHTCEEEE
T ss_pred             hhHHHHHHHHhcCCccCCCCceEECCCCcchHHHHhhhhcccccccccCCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEE
Confidence            346799999998777778888 9999999999998788999999998899999999999999999999999999999999


Q ss_pred             EeCCCCCCCCcccCCCCCCeEEEEcCCCCCeEEeCCCCEEEEcCCCcHHHHHHHHHhcCCcceecCCCCCCccchhhhhC
Q 036220           92 RSGGHDYEGLSYVSETETPFIIVDLAKLRSVKVDIDDNSAWVQAGATIGEVYYRISEKSKTHGFPAGLCTSLGVGGHITG  171 (522)
Q Consensus        92 ~ggGh~~~~~~~~~d~~~~givIdl~~l~~i~~d~~~~~v~v~aG~~~~~l~~~l~~~g~~~~~~~g~~~~vgigG~~~g  171 (522)
                      ||||||+.+.+...  +.++++|||++||+|++|+++.+|+||||+++++|+++|.++|+++.+++|.|++|||||+++|
T Consensus        83 rggGh~~~g~~~~~--~~~gvvIdl~~l~~i~vd~~~~~v~V~aG~~l~~l~~~l~~~g~gl~~~~G~~~~vgvgG~~~g  160 (518)
T 3vte_A           83 RSGGHDAEGMSYIS--QVPFVVVDLRNMHSIKIDVHSQTAWVEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSG  160 (518)
T ss_dssp             ESSCCCTTCTTTCC--SSSEEEEECTTCCCEEEETTTTEEEEETTCBHHHHHHHHHHHCTTEECCCCSCTTCBHHHHHHT
T ss_pred             ECCCcCCCCCccCC--CCCeEEEECCCCceeEEeCCCCEEEEeCCccHHHHHHHHHHhCCCceecCCCCCCeeeeeeeCC
Confidence            99999998876432  1368999999999999999999999999999999999999998789999999999999999999


Q ss_pred             CCCCCcccccCccccceeEEEEEccCCcEecccCCCcchhhhhhccCCCceEEEEEEEEEEEecCceEEEEEEEechH-H
Q 036220          172 GAYGSMMRKYGLGADNVVDARIVDASGRILDREAMGEDFFWAIRGGGGASFGVILAWKIKLVPVPATVTVFTVTKTLE-Q  250 (522)
Q Consensus       172 gg~g~~~~~~G~~~d~v~~~~vv~~~G~~~~~~~~~~dl~~a~rg~~~g~~Givt~~~lk~~p~p~~~~~~~~~~~~~-~  250 (522)
                      ||+|+++++||+++|+|+++|||++||++++.+.+++|||||+|||++|+|||||+++||++|.|+.+..|.+.+..+ +
T Consensus       161 Gg~G~~s~~~G~~~D~V~~~evV~adG~iv~~~~~~~DLf~a~rGgg~g~fGIVt~~~l~l~p~p~~~~~~~~~~~~~~~  240 (518)
T 3vte_A          161 GGYGALMRNYGLAADNIIDAHLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIH  240 (518)
T ss_dssp             CCCCTTHHHHCCGGGGEEEEEEECTTCCEECHHHHCHHHHHHHTTSCGGGTCEEEEEEEECEECCSCEEEEEEEECCCHH
T ss_pred             CCCccccCCCCchhheEEEEEEEccCCeEEEeeccccchhhheecccCCCceEEEEEEEEEEeCCCeEEEEEEEecCCHH
Confidence            999999999999999999999999999999755568999999999855899999999999999999888888877543 5


Q ss_pred             HHHHHHHHHHHHHhhccccceEEEEEEEecCC---CCCCceEEEEEEEEEeCCHHHHHHHHHhhCCcCCCCcCccccccH
Q 036220          251 CATKLLHRWQEVADKLDEDLFIRVIIQVANAG---PKGEKTVTTSYNSLFLGGAERLLKVVEESFPELGLTKKDCTETSW  327 (522)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~G~~~~~~~~l~~~~~~~~~~~~~~~~~~~  327 (522)
                      ++.+++.+|+++.+++|+++++.+.+...++.   +.+...+.+.+.++|+|+.+++.+.|.+.|++++....++.+++|
T Consensus       241 ~~~~~l~~~~~~~~~~p~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~~~~~~l~~~~~~lg~~~~~~~~~~w  320 (518)
T 3vte_A          241 GLVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLMNKSFPELGIKKTDCKEFSW  320 (518)
T ss_dssp             HHHHHHHHHHHHGGGSCTTEEEEEEEEEESCC-------CEEEEEEEEEEESCHHHHHHHHHHHCGGGCCCGGGEEEECH
T ss_pred             HHHHHHHHHHHHHHcCCHhHeEEEEEcccCCCCCCCcCCCceEEEEEEEEeCCHHHHhhhhhhhhhhcCCCccceeecch
Confidence            67889999999999999999999888753211   112233467889999999999999998888888876677889999


Q ss_pred             HHHHHHHhcCCCC-CC---ccccccCCccccccccccccCcCCCCCHHHHHHHHHHHhcC--CCceEEEEecCCccCCCC
Q 036220          328 IKSVLYIAGYPSN-TP---PEVLLQGKSLFKNYFKAKSDFVKDPIPETALEGLWKRLLGE--DSPLMIWTPYGGMMSKIS  401 (522)
Q Consensus       328 ~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~f~~~s~~~~~~l~~~~i~~l~~~~~~~--~~~~i~~~~~Gga~~~~~  401 (522)
                      ++.+.+++.++.+ .+   ++.+.++......+||.||+|+.++++++.++.+++++.+.  +.+.+.++++||++++++
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~ks~~~~~~l~~~~i~~l~~~~~~~~~~~~~v~~~~~GGa~~~v~  400 (518)
T 3vte_A          321 IDTTIFYSGVVNFNTANFKKEILLDRSAGKKTAFSIKLDYVKKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEIS  400 (518)
T ss_dssp             HHHHHHTSSSCCC-----CGGGGGCTTCSCCBEEEEEEEEESSCCCHHHHHHHHHGGGGSCTTTEEEEEEECCGGGGTSC
T ss_pred             hhhhhhhhcCCccCCccchhhhhccCCcCcccceeeechhcccCCCHHHHHHHHHHHHhCCCCCeEEEEeecCccccCCC
Confidence            9988887655432 23   44455554344457788999998899999999999988763  357889999999999999


Q ss_pred             CCCCCCcccCCceEEEEEEEecCCCchhhhHHHHHHHHHHHhccccccCCCCceeccccCcccC-CC-CCCCcccccchh
Q 036220          402 ESEIPFPHRKGTLFKIQYVSTWQDGEKNATKHIDWIRRLYNYMGPYVSMLPRAAYVNYRDLDLG-MN-KNGSSFIKSSVW  479 (522)
Q Consensus       402 ~~~tAf~~R~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~Y~Ny~d~~~~-~~-~~~~~~~~~~~~  479 (522)
                      .++|||+||++.+|.+++.+.|.+ ++.++++.+|++++++.|.|+.+..+.++|+||.|.+++ .. ..|.+++.++.|
T Consensus       401 ~~~TAf~hR~~~~~~~~~~~~w~~-~~~~~~~~~w~~~~~~~~~p~~~~~~~g~YvNy~D~dl~~~~~~~~~~~~~~~~w  479 (518)
T 3vte_A          401 ESAIPFPHRAGIMYELWYTASWEK-QEDNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQARIW  479 (518)
T ss_dssp             TTSSSCCCCTTCCEEEEEEEEECC-TTTHHHHHHHHHHHHHHTGGGSCCTTCCCCTTSCCGGGCCCCTTSCCCHHHHHHH
T ss_pred             CCCCcccccCcceEEEEEEEecCC-cchhHHHHHHHHHHHHHhccccCCCCccccccCCCccccccccccccchhhhhhH
Confidence            999999999955899999999974 667788999999999999998655567899999998875 21 112234445579


Q ss_pred             hhhhccccHHHHHHhhhhcCCCCccccCCCCCCCCC
Q 036220          480 GYKYFKDNFNRLVKVKTKVDPDNFFRHEQSIPPLPL  515 (522)
Q Consensus       480 ~~~yyg~n~~RL~~IK~kyDP~~vF~~~q~i~~~~~  515 (522)
                      ++.|||+||+||++||+||||+|||+++|||+|.+.
T Consensus       480 ~~~Yyg~N~~RL~~vK~~yDP~n~F~~~QsI~p~~~  515 (518)
T 3vte_A          480 GEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPLPP  515 (518)
T ss_dssp             HHHHSSTHHHHHHHHHHHHCTTCCSCCTTCCCCCCT
T ss_pred             HHHHhHhHHHHHHHHHhhcCchhcccCCCCCCCCCC
Confidence            999999999999999999999999999999999765
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 4ec3_A* 3fw8_A* 3fw7_A* 3fwa_A* Back     alignment and structure
>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A* Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Back     alignment and structure
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris} Back     alignment and structure
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A* Back     alignment and structure
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* 4aut_A* 4f4q_A* 4g3t_A 4g3u_A Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Back     alignment and structure
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Back     alignment and structure
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: FAD; 2.69A {Listeria monocytogenes} Back     alignment and structure
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae} Back     alignment and structure
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1 Back     alignment and structure
>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A* 2q85_A* 2mbr_A* Back     alignment and structure
>2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A* Back     alignment and structure
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus} Back     alignment and structure
>1ffv_C CUTM, flavoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: d.87.2.1 d.145.1.3 PDB: 1ffu_C* Back     alignment and structure
>1n62_C Carbon monoxide dehydrogenase medium chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: d.87.2.1 d.145.1.3 PDB: 1n5w_C* 1n61_C* 1n60_C* 1n63_C* 1zxi_C* Back     alignment and structure
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A* Back     alignment and structure
>3nvz_B Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE I3A; 1.60A {Bos taurus} PDB: 3eub_B* 3etr_B* 3ns1_B* 3nrz_B* 3rca_B* 3sr6_B* 3nvw_B* 3nvv_B* 3nvy_B* Back     alignment and structure
>1t3q_C Quinoline 2-oxidoreductase medium subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.87.2.1 d.145.1.3 Back     alignment and structure
>3hrd_C Nicotinate dehydrogenase FAD-subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri} Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Back     alignment and structure
>1rm6_B 4-hydroxybenzoyl-COA reductase beta subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.87.2.1 d.145.1.3 PDB: 1sb3_B* Back     alignment and structure
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A* Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 522
d1w1oa2206 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Ma 1e-16
d2i0ka2216 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibac 3e-15
d1e8ga2268 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fung 8e-05
d1f0xa2265 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Esche 0.001
d1wvfa2236 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cres 0.003
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Length = 206 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

 Score = 76.5 bits (187), Expect = 1e-16
 Identities = 32/179 (17%), Positives = 57/179 (31%), Gaps = 8/179 (4%)

Query: 62  KPEFIFTPLYEAHVQAAVICCKE---LGVHLRVRSGGHDYEGLSYVSE--TETPFIIVDL 116
            P  +  P     + A +            +  R  GH   G ++           + D 
Sbjct: 29  LPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPGGVVVNMASLGDA 88

Query: 117 AKLRSVKVDIDDNSAWVQAGATIGEVYYRISEKSKTHGFPAGLCTSLGVGGHITGGAYGS 176
           A    + V  D             +V      +             L VGG ++      
Sbjct: 89  AAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVAPRSW-TDYLYLTVGGTLSNAGISG 147

Query: 177 MMRKYGLGADNVVDARIVDASGRILD-REAMGEDFFWAIRGGGGASFGVILAWKIKLVP 234
              ++G    NV++  ++   G ++   + +  D F A+ GG G  FGVI   +I + P
Sbjct: 148 QAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLG-QFGVITRARIAVEP 205
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Length = 216 Back     information, alignment and structure
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Length = 268 Back     information, alignment and structure
>d1f0xa2 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 265 Back     information, alignment and structure
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Length = 236 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query522
d1w1oa2206 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 100.0
d1wvfa2236 Flavoprotein subunit of p-cresol methylhydroxylase 99.98
d2i0ka2216 Cholesterol oxidase {Brevibacterium sterolicum [Ta 99.96
d1e8ga2268 Vanillyl-alcohol oxidase {Fungus (Penicillium simp 99.96
d1hska1194 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 99.87
d1uxya1198 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 99.86
d1f0xa2265 D-lactate dehydrogenase {Escherichia coli [TaxId: 99.82
d1ffvc2177 Carbon monoxide (CO) dehydrogenase flavoprotein, N 96.05
d1t3qc2176 Quinoline 2-oxidoreductase medium subunit QorM {Ps 93.73
d1v97a6223 Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [ 93.62
d1rm6b2216 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, 93.43
d1jroa4167 Xanthine dehydrogenase chain A, domain 3 {Rhodobac 93.35
d1n62c2177 Carbon monoxide (CO) dehydrogenase flavoprotein, N 92.77
d1w1oa1289 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 88.33
d1e8ga1287 Vanillyl-alcohol oxidase {Fungus (Penicillium simp 83.43
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

Probab=100.00  E-value=1.1e-36  Score=286.69  Aligned_cols=177  Identities=18%  Similarity=0.255  Sum_probs=158.9

Q ss_pred             ccccCCCCCCCceEEEecCCHHHHHHHHHHHHHc---CCeEEEEeCCCCCCCCcccCCCCCCeEEEEcCCCCCe------
Q 036220           52 NLRYLVPSMPKPEFIFTPLYEAHVQAAVICCKEL---GVHLRVRSGGHDYEGLSYVSETETPFIIVDLAKLRSV------  122 (522)
Q Consensus        52 n~r~~~~~~~~p~~vv~P~t~~dv~~~v~~a~~~---~~~v~~~ggGh~~~~~~~~~d~~~~givIdl~~l~~i------  122 (522)
                      ...|.......|.+|++|+|++||+++|++|+++   ++||++||+||++.+.+...    ++++|||++||+|      
T Consensus        19 ~~d~~~~~~~~P~~Vv~P~s~~ev~~iv~~a~~~~~~~~~v~~rggGhs~~g~s~~~----~~ividl~~l~~i~~~~~~   94 (206)
T d1w1oa2          19 STDFGNITSALPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAP----GGVVVNMASLGDAAAPPRI   94 (206)
T ss_dssp             SCCTTCSCCCCCSEEECCSSHHHHHHHHHHHHHCTTCCCCEEEESSCCCSSSTTCCT----TSEEEEGGGGGCSSSSCSE
T ss_pred             EECcccCcccCCCEEEEcCCHHHHHHHHHHHHhCCCCCeEEEEECCCCCcccCcccC----CCEeeeccccceeeeceeE
Confidence            3446555667999999999999999999999997   69999999999999887655    5799999999986      


Q ss_pred             EEeCCCCEEEEcCCCcHHHHHHHHHhcCCcceec-CCCCCCccchhhhhCCCCCCcccccCccccceeEEEEEccCCcEe
Q 036220          123 KVDIDDNSAWVQAGATIGEVYYRISEKSKTHGFP-AGLCTSLGVGGHITGGAYGSMMRKYGLGADNVVDARIVDASGRIL  201 (522)
Q Consensus       123 ~~d~~~~~v~v~aG~~~~~l~~~l~~~g~~~~~~-~g~~~~vgigG~~~ggg~g~~~~~~G~~~d~v~~~~vv~~~G~~~  201 (522)
                      ++|++..+++||+|+++.+|.++|.++|+  .++ .+....++|||++++||+|..+++||..+|+|+++|+|++||+++
T Consensus        95 ~id~~~~~v~v~aG~~~~~l~~~l~~~Gl--~~~~~~~~~~~tvGG~i~~~g~g~~s~~~G~~~d~v~~~evV~~~G~~~  172 (206)
T d1w1oa2          95 NVSADGRYVDAGGEQVWIDVLRASLARGV--APRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMV  172 (206)
T ss_dssp             EECTTSSEEEEETTCBHHHHHHHHHTTTE--EESCCCSSCCSBHHHHHTTCCCSTTHHHHCCGGGSEEEEEEEETTSCEE
T ss_pred             EEecCCCEEEEEcceehhhhhhhhhcccc--ccccCCccCceEEeeeeccccceeccccccceeeeeeEEEEEcCCCcEE
Confidence            68999999999999999999999999874  333 456677899999999999999999999999999999999999999


Q ss_pred             c-ccCCCcchhhhhhccCCCceEEEEEEEEEEEec
Q 036220          202 D-REAMGEDFFWAIRGGGGASFGVILAWKIKLVPV  235 (522)
Q Consensus       202 ~-~~~~~~dl~~a~rg~~~g~~Givt~~~lk~~p~  235 (522)
                      + ++++|+||||++||+. |+|||||+++||++|+
T Consensus       173 ~~s~~~~~dl~~a~~g~~-G~~Giit~~tl~l~PA  206 (206)
T d1w1oa2         173 TCSKQLNADLFDAVLGGL-GQFGVITRARIAVEPA  206 (206)
T ss_dssp             EEESSSSHHHHHHHTTCT-TCSEEEEEEEEEEEEC
T ss_pred             EECCCCCHHHHHHHhhCC-CccEeEEEEEEEEEcC
Confidence            7 6667899999999998 8999999999999985
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Back     information, alignment and structure
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Back     information, alignment and structure
>d1hska1 d.145.1.2 (A:15-208) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1uxya1 d.145.1.2 (A:3-200) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1f0xa2 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ffvc2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Hydrogenophaga pseudoflava [TaxId: 47421]} Back     information, alignment and structure
>d1t3qc2 d.145.1.3 (C:1-176) Quinoline 2-oxidoreductase medium subunit QorM {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1v97a6 d.145.1.3 (A:192-414) Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rm6b2 d.145.1.3 (B:1-216) 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, N-terminal domain {Thauera aromatica [TaxId: 59405]} Back     information, alignment and structure
>d1jroa4 d.145.1.3 (A:179-345) Xanthine dehydrogenase chain A, domain 3 {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
>d1n62c2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]} Back     information, alignment and structure
>d1w1oa1 d.58.32.4 (A:246-534) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1e8ga1 d.58.32.1 (A:274-560) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Back     information, alignment and structure