Citrus Sinensis ID: 036245

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60----
Protein Sequence
MMNSMRLYALPVIGFMFMAILQLGNAQNMAPSPAPAPSSDGTAIDQGIAYILMVLALAITYLVH
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
mmnsmrlyalPVIGFMFMAILQLgnaqnmapspapapssdgtaiDQGIAYILMVLALAITYLVH
Flexible Loop (DISEMBL)
MMNSMRLYALPVIGFMFMAILQLGNAQNMAPSPAPAPSSDGTAIDQGIAYILMVLALAITYLVH
Low Complexity Region (SEG)
MMNSMRLYALPVIGFMFMAILQLGNAQNMapspapapssDGTAIDQGIAYILMVLALAITYLVH
Disordered region (IsUnstruct)
*****RLYALPVIGFMFMAILQLG******************AIDQGIAYILMVLALAITYLV*
Disordered Region (DISOPRED)
*****RL*ALPVIGFMFMAILQL*******************AIDQGIAYILMVLALAITYLVH
Disordered Region (DISEMBL)
MMNSMRLYALPVIGFMFMAILQLGNAQ************DGTAIDQGIAYILMVLALAITYLVH
Disordered Region (DISPRO)
***SMRLYALPVIGFMFMAILQLGNAQ***********SDGTAIDQGIAYILMVLALAITYLVH
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (HMMTOP)
iiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
iiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHi
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MMNSMRLYALPVIGFMFMAILQLGNAQNMAPSPAPAPSSDGTAIDQGIAYILMVLALAITYLVH
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	64	2.2.26 [Sep-21-2011]
O82337	73	Arabinogalactan peptide 1	yes	no	0.906	0.794	0.596	3e-12
Q9FK16	63	Arabinogalactan peptide 2	no	no	0.781	0.793	0.58	7e-11
Q9M373	74	Arabinogalactan peptide 2	no	no	0.906	0.783	0.548	2e-10

>sp|O82337|AGP16_ARATH Arabinogalactan peptide 16 OS=Arabidopsis thaliana GN=AGP16 PE=1 SV=1

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 37/62 (59%), Positives = 48/62 (77%), Gaps = 4/62 (6%)

Query: 3  NSMRLYALPVIGFMFMAILQLGNAQNMAPSPAPAPSSDGTAIDQGIAYILMVLALAITYL 62
          NS+  +AL    F+F  IL L  AQ++AP  APAP+SDGT+IDQGIAY+LMV+AL +TYL
Sbjct: 5  NSVTGFAL--FSFVFAVILSLAGAQSLAP--APAPTSDGTSIDQGIAYLLMVVALVLTYL 60

Query: 63 VH 64
          +H
Sbjct: 61 IH 62

Proteoglycan that seems to be implicated in diverse developmental roles such as differentiation, cell-cell recognition, embryogenesis and programmed cell death.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FK16|AGP22_ARATH Arabinogalactan peptide 22 OS=Arabidopsis thaliana GN=AGP22 PE=3 SV=1

 Score = 65.9 bits (159), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 29/50 (58%), Positives = 43/50 (86%)

Query: 15 FMFMAILQLGNAQNMAPSPAPAPSSDGTAIDQGIAYILMVLALAITYLVH 64
          F+ ++++ L  AQ+ + SPAPAP+SDGT+IDQGIAY+LM++ALA+TY +H
Sbjct: 14 FVIISVILLPIAQSHSSSPAPAPTSDGTSIDQGIAYVLMMVALALTYFIH 63

Proteoglycan that seems to be implicated in diverse developmental roles such as differentiation, cell-cell recognition, embryogenesis and programmed cell death.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M373|AGP20_ARATH Arabinogalactan peptide 20 OS=Arabidopsis thaliana GN=AGP20 PE=3 SV=1

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/62 (54%), Positives = 46/62 (74%), Gaps = 4/62 (6%)

Query: 3  NSMRLYALPVIGFMFMAILQLGNAQNMAPSPAPAPSSDGTAIDQGIAYILMVLALAITYL 62
          NS+ + AL    F+F  I     AQ++AP  AP+P+SDGT+IDQGIAY+LMV+AL +TYL
Sbjct: 5  NSVAVIAL--FAFVFAVISPFAGAQSLAP--APSPTSDGTSIDQGIAYLLMVVALVLTYL 60

Query: 63 VH 64
          +H
Sbjct: 61 IH 62

Proteoglycan that seems to be implicated in diverse developmental roles such as differentiation, cell-cell recognition, embryogenesis and programmed cell death.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	64
224143520	63	predicted protein [Populus trichocarpa]	0.984	1.0	0.666	2e-17
255546527	65	conserved hypothetical protein [Ricinus	1.0	0.984	0.615	2e-14
356520575	63	PREDICTED: arabinogalactan peptide 22-li	0.984	1.0	0.587	3e-13
359484592	64	PREDICTED: arabinogalactan peptide 16-li	0.984	0.984	0.546	9e-13
356531255	63	PREDICTED: arabinogalactan peptide 22-li	0.984	1.0	0.571	3e-12
357500477	64	Arabinogalactan peptide [Medicago trunca	1.0	1.0	0.515	6e-11
42569970	73	arabinogalactan protein 16 [Arabidopsis	0.906	0.794	0.596	1e-10
449443145	63	PREDICTED: arabinogalactan peptide 22-li	0.984	1.0	0.555	6e-10
15238685	63	arabinogalactan protein 22 [Arabidopsis	0.781	0.793	0.58	3e-09
15233171	74	arabinogalactan protein 20 [Arabidopsis	0.906	0.783	0.548	7e-09

>gi|224143520|ref|XP_002324983.1| predicted protein [Populus trichocarpa] gi|222866417|gb|EEF03548.1| predicted protein [Populus trichocarpa]

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/63 (66%), Positives = 53/63 (84%)

Query: 2  MNSMRLYALPVIGFMFMAILQLGNAQNMAPSPAPAPSSDGTAIDQGIAYILMVLALAITY 61
          M+SMRL+ALP+IGFMF+A+L+ G  Q  APSPA  P++DG  IDQGIAY+L++LALAITY
Sbjct: 1  MSSMRLHALPIIGFMFLALLEFGFGQGTAPSPAEGPTNDGKTIDQGIAYVLLMLALAITY 60

Query: 62 LVH 64
          L H
Sbjct: 61 LFH 63

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546527|ref|XP_002514323.1| conserved hypothetical protein [Ricinus communis] gi|223546779|gb|EEF48277.1| conserved hypothetical protein [Ricinus communis]

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/65 (61%), Positives = 51/65 (78%), Gaps = 1/65 (1%)

Query: 1  MMNSMRLYALPVIGFMFMAILQLGNAQNMAPSPA-PAPSSDGTAIDQGIAYILMVLALAI 59
          M   M+LYALP+IG +  A+ Q+G AQ MAPSPA   PSSDG +IDQGIAY+L+++ALA+
Sbjct: 1  MSTPMKLYALPIIGLVIFALFQIGYAQTMAPSPAAEGPSSDGNSIDQGIAYVLLLVALAV 60

Query: 60 TYLVH 64
          TYL H
Sbjct: 61 TYLFH 65

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520575|ref|XP_003528937.1| PREDICTED: arabinogalactan peptide 22-like [Glycine max]

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 37/63 (58%), Positives = 50/63 (79%)

Query: 2  MNSMRLYALPVIGFMFMAILQLGNAQNMAPSPAPAPSSDGTAIDQGIAYILMVLALAITY 61
          M ++ ++ALP++    MAI +L  AQ++  SPAP P+SDGTAIDQGIAYILMV+AL ITY
Sbjct: 1  MRTVNIFALPLLALFIMAISRLAQAQDLPLSPAPPPTSDGTAIDQGIAYILMVVALGITY 60

Query: 62 LVH 64
          ++H
Sbjct: 61 MIH 63

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484592|ref|XP_003633125.1| PREDICTED: arabinogalactan peptide 16-like [Vitis vinifera]

 Score = 77.8 bits (190), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 35/64 (54%), Positives = 49/64 (76%), Gaps = 1/64 (1%)

Query: 2  MNSMRLYALPVIGFMFMAILQLGNAQNMAPSPAP-APSSDGTAIDQGIAYILMVLALAIT 60
          MN ++ YA P++G + +A+L+    Q +APSPAP  P SDG+ IDQGIA++L+V+AL IT
Sbjct: 1  MNPIKFYAFPIVGLVLLALLEGSRGQGIAPSPAPQGPFSDGSTIDQGIAFVLLVVALVIT 60

Query: 61 YLVH 64
          YLVH
Sbjct: 61 YLVH 64

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531255|ref|XP_003534193.1| PREDICTED: arabinogalactan peptide 22-like [Glycine max]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/63 (57%), Positives = 50/63 (79%)

Query: 2  MNSMRLYALPVIGFMFMAILQLGNAQNMAPSPAPAPSSDGTAIDQGIAYILMVLALAITY 61
          M ++ ++ALP++    MAI +LG AQ++  SPAP P+S G AIDQGIAYILM++ALAITY
Sbjct: 1  MRTVSVFALPLVALFIMAISRLGQAQDLPLSPAPPPTSHGNAIDQGIAYILMLVALAITY 60

Query: 62 LVH 64
          ++H
Sbjct: 61 MMH 63

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357500477|ref|XP_003620527.1| Arabinogalactan peptide [Medicago truncatula] gi|355495542|gb|AES76745.1| Arabinogalactan peptide [Medicago truncatula]

 Score = 71.6 bits (174), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 33/64 (51%), Positives = 43/64 (67%)

Query: 1  MMNSMRLYALPVIGFMFMAILQLGNAQNMAPSPAPAPSSDGTAIDQGIAYILMVLALAIT 60
          MM  M ++  P++   FMAI  LG AQ    SPAP+P+SD   +DQGIAY LM++AL IT
Sbjct: 1  MMTMMSIFTFPLLSLFFMAISHLGQAQGFDMSPAPSPTSDAQILDQGIAYFLMLVALVIT 60

Query: 61 YLVH 64
          Y+ H
Sbjct: 61 YMFH 64

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42569970|ref|NP_566070.3| arabinogalactan protein 16 [Arabidopsis thaliana] gi|297828351|ref|XP_002882058.1| hypothetical protein ARALYDRAFT_483786 [Arabidopsis lyrata subsp. lyrata] gi|75100629|sp|O82337.1|AGP16_ARATH RecName: Full=Arabinogalactan peptide 16; Short=AG-peptide 16; Flags: Precursor gi|10880509|gb|AAG24284.1|AF195897_1 arabinogalactan protein [Arabidopsis thaliana] gi|15294170|gb|AAK95262.1|AF410276_1 At2g46330/F11C10.2 [Arabidopsis thaliana] gi|4559376|gb|AAD23036.1| expressed protein [Arabidopsis thaliana] gi|20197373|gb|AAM15047.1| expressed protein [Arabidopsis thaliana] gi|20453295|gb|AAM19886.1| At2g46330/F11C10.2 [Arabidopsis thaliana] gi|21553759|gb|AAM62852.1| unknown [Arabidopsis thaliana] gi|297327897|gb|EFH58317.1| hypothetical protein ARALYDRAFT_483786 [Arabidopsis lyrata subsp. lyrata] gi|330255586|gb|AEC10680.1| arabinogalactan protein 16 [Arabidopsis thaliana]

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/62 (59%), Positives = 48/62 (77%), Gaps = 4/62 (6%)

Query: 3  NSMRLYALPVIGFMFMAILQLGNAQNMAPSPAPAPSSDGTAIDQGIAYILMVLALAITYL 62
          NS+  +AL    F+F  IL L  AQ++AP  APAP+SDGT+IDQGIAY+LMV+AL +TYL
Sbjct: 5  NSVTGFAL--FSFVFAVILSLAGAQSLAP--APAPTSDGTSIDQGIAYLLMVVALVLTYL 60

Query: 63 VH 64
          +H
Sbjct: 61 IH 62

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443145|ref|XP_004139341.1| PREDICTED: arabinogalactan peptide 22-like [Cucumis sativus] gi|449521078|ref|XP_004167558.1| PREDICTED: arabinogalactan peptide 22-like [Cucumis sativus]

 Score = 68.2 bits (165), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 35/63 (55%), Positives = 52/63 (82%)

Query: 2  MNSMRLYALPVIGFMFMAILQLGNAQNMAPSPAPAPSSDGTAIDQGIAYILMVLALAITY 61
          M+S++L A+P++GF+F+ +LQL +  +   SPA  PS+DG AIDQGIAY+L++LALA+TY
Sbjct: 1  MSSLKLTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTY 60

Query: 62 LVH 64
          +VH
Sbjct: 61 IVH 63

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15238685|ref|NP_200137.1| arabinogalactan protein 22 [Arabidopsis thaliana] gi|75171157|sp|Q9FK16.1|AGP22_ARATH RecName: Full=Arabinogalactan peptide 22; Short=AG-peptide 22; Flags: Precursor gi|9759172|dbj|BAB09787.1| unnamed protein product [Arabidopsis thaliana] gi|38566508|gb|AAR24144.1| At5g53250 [Arabidopsis thaliana] gi|40823626|gb|AAR92294.1| At5g53250 [Arabidopsis thaliana] gi|110737731|dbj|BAF00804.1| predicted GPI-anchored protein [Arabidopsis thaliana] gi|332008946|gb|AED96329.1| arabinogalactan protein 22 [Arabidopsis thaliana]

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/50 (58%), Positives = 43/50 (86%)

Query: 15 FMFMAILQLGNAQNMAPSPAPAPSSDGTAIDQGIAYILMVLALAITYLVH 64
          F+ ++++ L  AQ+ + SPAPAP+SDGT+IDQGIAY+LM++ALA+TY +H
Sbjct: 14 FVIISVILLPIAQSHSSSPAPAPTSDGTSIDQGIAYVLMMVALALTYFIH 63

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15233171|ref|NP_191723.1| arabinogalactan protein 20 [Arabidopsis thaliana] gi|75183616|sp|Q9M373.1|AGP20_ARATH RecName: Full=Arabinogalactan peptide 20; Short=AG-peptide 20; Flags: Precursor gi|6850855|emb|CAB71094.1| putative protein [Arabidopsis thaliana] gi|21536871|gb|AAM61203.1| unknown [Arabidopsis thaliana] gi|98960995|gb|ABF58981.1| At3g61640 [Arabidopsis thaliana] gi|332646714|gb|AEE80235.1| arabinogalactan protein 20 [Arabidopsis thaliana]

 Score = 64.7 bits (156), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 34/62 (54%), Positives = 46/62 (74%), Gaps = 4/62 (6%)

Query: 3  NSMRLYALPVIGFMFMAILQLGNAQNMAPSPAPAPSSDGTAIDQGIAYILMVLALAITYL 62
          NS+ + AL    F+F  I     AQ++AP  AP+P+SDGT+IDQGIAY+LMV+AL +TYL
Sbjct: 5  NSVAVIAL--FAFVFAVISPFAGAQSLAP--APSPTSDGTSIDQGIAYLLMVVALVLTYL 60

Query: 63 VH 64
          +H
Sbjct: 61 IH 62

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	64
TAIR|locus:2039079	73	AGP16 "arabinogalactan protein	0.906	0.794	0.483	7.6e-09
TAIR|locus:2076730	74	AGP20 "arabinogalactan protein	0.906	0.783	0.451	8.7e-08
TAIR|locus:2154232	63	AGP22 "arabinogalactan protein	0.968	0.984	0.390	1.1e-07
TAIR|locus:1006230578	63	AGP41 "AT5G24105" [Arabidopsis	0.953	0.968	0.384	1.8e-07

TAIR|locus:2039079 AGP16 "arabinogalactan protein 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
 Identities = 30/62 (48%), Positives = 40/62 (64%)

Query:     3 NSMRLYALPVIGFMFMAILQLGNAQNMXXXXXXXXXXDGTAIDQGIAYILMVLALAITYL 62
             NS+  +AL    F+F  IL L  AQ++          DGT+IDQGIAY+LMV+AL +TYL
Sbjct:     5 NSVTGFAL--FSFVFAVILSLAGAQSLAPAPAPTS--DGTSIDQGIAYLLMVVALVLTYL 60

Query:    63 VH 64
             +H
Sbjct:    61 IH 62

GO:0005886 "plasma membrane" evidence=ISM

GO:0031225 "anchored to membrane" evidence=TAS

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

TAIR|locus:2076730 AGP20 "arabinogalactan protein 20" [Arabidopsis thaliana (taxid:3702)]

 Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
 Identities = 28/62 (45%), Positives = 38/62 (61%)

Query:     3 NSMRLYALPVIGFMFMAILQLGNAQNMXXXXXXXXXXDGTAIDQGIAYILMVLALAITYL 62
             NS+ + AL    F+F  I     AQ++          DGT+IDQGIAY+LMV+AL +TYL
Sbjct:     5 NSVAVIAL--FAFVFAVISPFAGAQSLAPAPSPTS--DGTSIDQGIAYLLMVVALVLTYL 60

Query:    63 VH 64
             +H
Sbjct:    61 IH 62

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0031225 "anchored to membrane" evidence=TAS

GO:0009612 "response to mechanical stimulus" evidence=RCA

TAIR|locus:2154232 AGP22 "arabinogalactan protein 22" [Arabidopsis thaliana (taxid:3702)]

 Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 25/64 (39%), Positives = 42/64 (65%)

Query:     2 MNSMRLYALPVIG-FMFMAILQLGNAQNMXXXXXXXXXXDGTAIDQGIAYILMVLALAIT 60
             M S++ + L ++  F+ ++++ L  AQ+           DGT+IDQGIAY+LM++ALA+T
Sbjct:     1 MASLK-FPLEILAVFVIISVILLPIAQSHSSSPAPAPTSDGTSIDQGIAYVLMMVALALT 59

Query:    61 YLVH 64
             Y +H
Sbjct:    60 YFIH 63

GO:0005886 "plasma membrane" evidence=ISM

GO:0031225 "anchored to membrane" evidence=TAS

GO:0006826 "iron ion transport" evidence=RCA

GO:0010054 "trichoblast differentiation" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:1006230578 AGP41 "AT5G24105" [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 25/65 (38%), Positives = 39/65 (60%)

Query:     2 MNSMRLY--ALPVIGFMFMAILQLGNAQNMXXXXXXXXXXDGTAIDQGIAYILMVLALAI 59
             M+  RL+     ++  +F  +L + +AQ+           DGT IDQGIAY+LM++AL +
Sbjct:     1 MSGSRLFFGVSTIVSIIFAILLPMAHAQS--AAPAPAPTSDGTTIDQGIAYVLMLVALVL 58

Query:    60 TYLVH 64
             TYL+H
Sbjct:    59 TYLIH 63


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.334   0.143   0.406    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       64        54   0.00091  102 3  10 21  0.44    26
                                                     29  0.38    27


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  442 (47 KB)
  Total size of DFA:  78 KB (2064 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  6.09u 0.18s 6.27t   Elapsed:  00:00:01
  Total cpu time:  6.09u 0.18s 6.27t   Elapsed:  00:00:01
  Start:  Sat May 11 06:44:46 2013   End:  Sat May 11 06:44:47 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O82337	AGP16_ARATH	No assigned EC number	0.5967	0.9062	0.7945	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00180672 hypothetical protein (63 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	64
pfam06376	34	pfam06376, DUF1070, Protein of unknown function (D	4e-08

>gnl|CDD|219002 pfam06376, DUF1070, Protein of unknown function (DUF1070)

 Score = 43.6 bits (103), Expect = 4e-08
 Identities = 23/35 (65%), Positives = 28/35 (80%), Gaps = 1/35 (2%)

Query: 30 APSPAPAPSSDGTAIDQGIAYILMVLALAITYLVH 64
          AP+P   P+SDG AIDQGIAY+LM  AL +TYL+H
Sbjct: 1  APAPRA-PTSDGKAIDQGIAYLLMDAALVVTYLLH 34

This family consists of several short hypothetical plant proteins of unknown function. Length = 34

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	64
PF06376	34	DUF1070: Protein of unknown function (DUF1070); In	99.83

>PF06376 DUF1070: Protein of unknown function (DUF1070); InterPro: IPR009424 This entry represents the arabinogalactan peptide family found in plants []

Probab=99.83  E-value=3.2e-21  Score=106.89  Aligned_cols=33  Identities=73%  Similarity=1.239  Sum_probs=30.9

Q ss_pred             CCCC-CCCCCchhHHHHHHHHHHHHHHHHHHHhC
Q 036245           32 SPAP-APSSDGTAIDQGIAYILMVLALAITYLVH   64 (64)
Q Consensus        32 apAp-ap~~dg~aiDQgIay~Lm~~Al~~tyl~h   64 (64)
                      |||| +|++||++|||||+|+||++||++||++|
T Consensus         1 apAp~ap~~Dg~aiDqgiay~Lm~~Al~~tyl~H   34 (34)
T PF06376_consen    1 APAPAAPTSDGKAIDQGIAYMLMLVALVVTYLFH   34 (34)
T ss_pred             CCCCCCcCCCcchhhHHHHHHHHHHHHHHHhhcC
Confidence            3566 89999999999999999999999999999

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00