Citrus Sinensis ID: 036258

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-
Protein Sequence
KSCEDITGLLRCFMASLAMTTVKNITTDQSALLAFKAHIADPYSVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDLCHWG
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHcccccccccHHHHHHHHHHcccccccccccccccccccccEEEccccccEEcccHHHHcccccccEEcccccEEEEccccccccccccccccccccccccccccHHHccccccccccccccccEEEEcccHHHHccccccccEEccccccccccHHHHccccccEEEccccEEEEcccccccccccccEEEccccEEccccccccccccccccccccccEEEcccccccccccHHHHHcHHHcccEEccccEEEEccccccccccccccEEccccEEEEccccccccccccccEEcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHcccccccEccccccHHHHHHHHHHccccccccccHHHccccccEEEEcccccccccccHHHHHHcccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEEcccccccccccccHHHHHccHcccEEEccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEccccccccccccccccccHHHcccccccEEEcccccccccccHHHHcHHHHccEEEcccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccc
Coil and Loop (DISEMBL)
KSCEDITGLLRCFMASLAMTTVKNITTDQSALLAFKAhiadpysvltKNCFYNISSLKMIRLssnslsgslpndlcnrlpsLEQLVLrsngffgqiplslskctqLQHLWLEHnkftgrlpenignLSKLRSLVlghkahnslhghlpstlsvslpnlkwLALGMNklrtipnsitnasELTLLELgknsfsglvpntfgnLRFLSLLDlgnnylttrssttEWSFLSSLTNCIYLKVLGlhsnqlsgilpplignfsDSLQQFYAYDCelkgsipqeignlnglidlrlqdndlngtiptTVGRLQQLQGLFLfgnnlqgsipsdlchwg
Flexible Loop (DISEMBL)
KSCEDITGLLRCFMASLAMTTVKNITTDQSALLAFKAHIADPYSVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGnnlqgsipsdlchwg
Low Complexity Region (SEG)
KSCEDITGLLRCFMASLAMTTVKNITTDQSALLAFKAHIADPYSVLTKNCFYNISSLKMIRlssnslsgslPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRlqqlqglflfgnnlqgSIPSDLCHWG
Disordered region (IsUnstruct)
****DITGLLRCFMASLAMTTVKNITTDQSALLAFKAHIADPYSVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDLC***
Disordered Region (DISOPRED)
KSCEDITGLLRCFMASLAMTTVKNITTDQSALLAFKAHIADPYSVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDLCHWG
Disordered Region (DISEMBL)
KSCEDITGLLRCFMASLAMTTVKNITTDQSALLAFKAHIADPYSVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDLCHWG
Disordered Region (DISPRO)
*****ITGLLRCFMASLAMTTVKNITTDQSALLAFKAHIADPYSVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDL****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
KSCEDITGLLRCFMASLAMTTVKNITTDQSALLAFKAHIADPYSVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDLCHWG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	331	2.2.26 [Sep-21-2011]
P93194	1109	Receptor-like protein kin	N/A	no	0.791	0.236	0.358	2e-36
C0LGP4	1010	Probable LRR receptor-lik	yes	no	0.815	0.267	0.384	6e-35
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.776	0.233	0.362	5e-33
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.728	0.192	0.352	6e-32
Q9LHP4	1141	Receptor-like protein kin	no	no	0.788	0.228	0.380	1e-31
Q8VZG8	1045	Probable LRR receptor-lik	no	no	0.803	0.254	0.339	2e-30
C0LGS2	1136	Probable LRR receptor-lik	no	no	0.794	0.231	0.334	7e-30
Q9LP24	1120	Probable leucine-rich rep	no	no	0.797	0.235	0.344	1e-29
Q9FZ59	1088	Leucine-rich repeat recep	no	no	0.800	0.243	0.338	2e-29
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.809	0.214	0.348	3e-29

>sp|P93194|RPK1_IPONI Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2

 Score =  153 bits (387), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 111/310 (35%), Positives = 160/310 (51%), Gaps = 48/310 (15%)

Query: 57  LKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKF 116
           +  + LSS  +SG    ++ + L  L+++VL  NGFFG IP  L  C+ L+H+ L  N F
Sbjct: 70  VDTLNLSSYGISGEFGPEI-SHLKHLKKVVLSGNGFFGSIPSQLGNCSLLEHIDLSSNSF 128

Query: 117 TGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLR-TIPNSI 175
           TG +P+ +G L  LR+L L     NSL G  P +L +S+P+L+ +    N L  +IP++I
Sbjct: 129 TGNIPDTLGALQNLRNLSL---FFNSLIGPFPESL-LSIPHLETVYFTGNGLNGSIPSNI 184

Query: 176 TNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNN-----------------YLTTR 218
            N SELT L L  N FSG VP++ GN+  L  L L +N                 YL  R
Sbjct: 185 GNMSELTTLWLDDNQFSGPVPSSLGNITTLQELYLNDNNLVGTLPVTLNNLENLVYLDVR 244

Query: 219 SSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQ- 277
           +++   +      +C  +  + L +NQ +G LPP +GN + SL++F A+ C L G IP  
Sbjct: 245 NNSLVGAIPLDFVSCKQIDTISLSNNQFTGGLPPGLGNCT-SLREFGAFSCALSGPIPSC 303

Query: 278 -----------------------EIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFL 314
                                  E+G    +IDL+LQ N L G IP  +G L QLQ L L
Sbjct: 304 FGQLTKLDTLYLAGNHFSGRIPPELGKCKSMIDLQLQQNQLEGEIPGELGMLSQLQYLHL 363

Query: 315 FGNNLQGSIP 324
           + NNL G +P
Sbjct: 364 YTNNLSGEVP 373

Possible role in short-day photoperiod floral induction.
Ipomoea nil (taxid: 35883)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1

 Score =  148 bits (373), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 115/299 (38%), Positives = 158/299 (52%), Gaps = 29/299 (9%)

Query: 51  FYNISSLKMIRLSSNSLSGSLP----------------NDLCNRLPS-------LEQLVL 87
            YN S L  +RL SN L GS+P                N++  +LP+       LEQL L
Sbjct: 134 LYNCSRLLNLRLDSNRLGGSVPSELGSLTNLVQLNLYGNNMRGKLPTSLGNLTLLEQLAL 193

Query: 88  RSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHL 147
             N   G+IP  +++ TQ+  L L  N F+G  P  + NLS L+ L +G   +N   G L
Sbjct: 194 SHNNLEGEIPSDVAQLTQIWSLQLVANNFSGVFPPALYNLSSLKLLGIG---YNHFSGRL 250

Query: 148 PSTLSVSLPNLKWLALGMNKLR-TIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLS 206
              L + LPNL    +G N    +IP +++N S L  L + +N+ +G +P TFGN+  L 
Sbjct: 251 RPDLGILLPNLLSFNMGGNYFTGSIPTTLSNISTLERLGMNENNLTGSIP-TFGNVPNLK 309

Query: 207 LLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYA 266
           LL L  N L + SS  +  FL+SLTNC  L+ LG+  N+L G LP  I N S  L     
Sbjct: 310 LLFLHTNSLGSDSS-RDLEFLTSLTNCTQLETLGIGRNRLGGDLPISIANLSAKLVTLDL 368

Query: 267 YDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPS 325
               + GSIP +IGNL  L  L L  N L+G +PT++G+L  L+ L LF N L G IP+
Sbjct: 369 GGTLISGSIPYDIGNLINLQKLILDQNMLSGPLPTSLGKLLNLRYLSLFSNRLSGGIPA 427

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  141 bits (356), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 99/273 (36%), Positives = 150/273 (54%), Gaps = 16/273 (5%)

Query: 57  LKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKF 116
           LK + LS N LSG +P ++ N   SLE L L +N F G+IP+ + K   L++L + +N+ 
Sbjct: 99  LKQLDLSYNGLSGKIPKEIGN-CSSLEILKLNNNQFDGEIPVEIGKLVSLENLIIYNNRI 157

Query: 117 TGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLR-TIPNSI 175
           +G LP  IGNL  L  LV      N++ G LP ++  +L  L     G N +  ++P+ I
Sbjct: 158 SGSLPVEIGNLLSLSQLV---TYSNNISGQLPRSIG-NLKRLTSFRAGQNMISGSLPSEI 213

Query: 176 TNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFL-SSLTNCI 234
                L +L L +N  SG +P   G L+ LS + L  N  +         F+   ++NC 
Sbjct: 214 GGCESLVMLGLAQNQLSGELPKEIGMLKKLSQVILWENEFS--------GFIPREISNCT 265

Query: 235 YLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDND 294
            L+ L L+ NQL G +P  +G+   SL+  Y Y   L G+IP+EIGNL+  I++   +N 
Sbjct: 266 SLETLALYKNQLVGPIPKELGDL-QSLEFLYLYRNGLNGTIPREIGNLSYAIEIDFSENA 324

Query: 295 LNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDL 327
           L G IP  +G ++ L+ L+LF N L G+IP +L
Sbjct: 325 LTGEIPLELGNIEGLELLYLFENQLTGTIPVEL 357

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  138 bits (347), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 98/278 (35%), Positives = 144/278 (51%), Gaps = 37/278 (13%)

Query: 51  FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLW 110
           F+N+S L  + L++N LSGSLP  +C+   +LEQLVL      G+IP+ LSKC  L+ L 
Sbjct: 307 FWNMSQLLDLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVELSKCQSLKQLD 366

Query: 111 LEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLR- 169
           L +N   G +PE +  L +L  L L    +N+L G L  ++S +L NL+WL L  N L  
Sbjct: 367 LSNNSLAGSIPEALFELVELTDLYL---HNNTLEGTLSPSIS-NLTNLQWLVLYHNNLEG 422

Query: 170 TIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSS 229
            +P  I+   +L +L L +N FSG +P   G                             
Sbjct: 423 KLPKEISALRKLEVLFLYENRFSGEIPQEIG----------------------------- 453

Query: 230 LTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLR 289
             NC  LK++ +  N   G +PP IG   + L   +    EL G +P  +GN + L  L 
Sbjct: 454 --NCTSLKMIDMFGNHFEGEIPPSIGRLKE-LNLLHLRQNELVGGLPASLGNCHQLNILD 510

Query: 290 LQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDL 327
           L DN L+G+IP++ G L+ L+ L L+ N+LQG++P  L
Sbjct: 511 LADNQLSGSIPSSFGFLKGLEQLMLYNNSLQGNLPDSL 548

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score =  137 bits (344), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 105/276 (38%), Positives = 154/276 (55%), Gaps = 15/276 (5%)

Query: 56  SLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNK 115
           SL+ + +S  +L+G+LP  L + L  L+ L L SNG  G IP SLSK   L+ L L  N+
Sbjct: 106 SLQKLTISGANLTGTLPESLGDCL-GLKVLDLSSNGLVGDIPWSLSKLRNLETLILNSNQ 164

Query: 116 FTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRT--IPN 173
            TG++P +I   SKL+SL+L     N L G +P+ L   L  L+ + +G NK  +  IP+
Sbjct: 165 LTGKIPPDISKCSKLKSLIL---FDNLLTGSIPTELG-KLSGLEVIRIGGNKEISGQIPS 220

Query: 174 SITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNC 233
            I + S LT+L L + S SG +P++ G L+ L  L +   Y T  S        S L NC
Sbjct: 221 EIGDCSNLTVLGLAETSVSGNLPSSLGKLKKLETLSI---YTTMISG----EIPSDLGNC 273

Query: 234 IYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDN 293
             L  L L+ N LSG +P  IG  +  L+Q + +   L G IP+EIGN + L  + L  N
Sbjct: 274 SELVDLFLYENSLSGSIPREIGQLT-KLEQLFLWQNSLVGGIPEEIGNCSNLKMIDLSLN 332

Query: 294 DLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDLCH 329
            L+G+IP+++GRL  L+   +  N   GSIP+ + +
Sbjct: 333 LLSGSIPSSIGRLSFLEEFMISDNKFSGSIPTTISN 368

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score =  133 bits (335), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/280 (33%), Positives = 147/280 (52%), Gaps = 14/280 (5%)

Query: 51  FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLW 110
           F ++ +L  + LS N  SG++ + L  R   LE   L  N   G+IP  L   + L  L 
Sbjct: 114 FSSLPNLTFVDLSMNRFSGTI-SPLWGRFSKLEYFDLSINQLVGEIPPELGDLSNLDTLH 172

Query: 111 LEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLR- 169
           L  NK  G +P  IG L+K+  + +     N L G +PS+   +L  L  L L +N L  
Sbjct: 173 LVENKLNGSIPSEIGRLTKVTEIAI---YDNLLTGPIPSSFG-NLTKLVNLYLFINSLSG 228

Query: 170 TIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSS 229
           +IP+ I N   L  L L +N+ +G +P++FGNL+ ++LL++  N L+             
Sbjct: 229 SIPSEIGNLPNLRELCLDRNNLTGKIPSSFGNLKNVTLLNMFENQLSGE-------IPPE 281

Query: 230 LTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLR 289
           + N   L  L LH+N+L+G +P  +GN   +L   + Y  +L GSIP E+G +  +IDL 
Sbjct: 282 IGNMTALDTLSLHTNKLTGPIPSTLGNIK-TLAVLHLYLNQLNGSIPPELGEMESMIDLE 340

Query: 290 LQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDLCH 329
           + +N L G +P + G+L  L+ LFL  N L G IP  + +
Sbjct: 341 ISENKLTGPVPDSFGKLTALEWLFLRDNQLSGPIPPGIAN 380

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1

 Score =  131 bits (330), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 108/323 (33%), Positives = 154/323 (47%), Gaps = 60/323 (18%)

Query: 53  NISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLE 112
           NI SLK + +S N  SG +P D+ N L  LE+L L +N   G+IP+ + +C  L  L  E
Sbjct: 330 NILSLKNLDVSGNLFSGEIPPDIGN-LKRLEELKLANNSLTGEIPVEIKQCGSLDVLDFE 388

Query: 113 HNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLR--- 169
            N   G++PE +G +  L+ L LG    NS  G++PS++ V+L  L+ L LG N L    
Sbjct: 389 GNSLKGQIPEFLGYMKALKVLSLGR---NSFSGYVPSSM-VNLQQLERLNLGENNLNGSF 444

Query: 170 ----------------------TIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSL 207
                                  +P SI+N S L+ L L  N FSG +P + GNL  L+ 
Sbjct: 445 PVELMALTSLSELDLSGNRFSGAVPVSISNLSNLSFLNLSGNGFSGEIPASVGNLFKLTA 504

Query: 208 LDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGN----------- 256
           LDL    ++          LS L N   ++V+ L  N  SG++P    +           
Sbjct: 505 LDLSKQNMSGEVPVE----LSGLPN---VQVIALQGNNFSGVVPEGFSSLVSLRYVNLSS 557

Query: 257 --FSDSLQQFYAY----------DCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVG 304
             FS  + Q + +          D  + GSIP EIGN + L  L L+ N L G IP  + 
Sbjct: 558 NSFSGEIPQTFGFLRLLVSLSLSDNHISGSIPPEIGNCSALEVLELRSNRLMGHIPADLS 617

Query: 305 RLQQLQGLFLFGNNLQGSIPSDL 327
           RL +L+ L L  NNL G IP ++
Sbjct: 618 RLPRLKVLDLGQNNLSGEIPPEI 640

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  130 bits (328), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 104/302 (34%), Positives = 153/302 (50%), Gaps = 38/302 (12%)

Query: 53  NISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLE 112
           N+ S+  + LS N L+GS+P+ L N L +L  L L  N   G IP  L     +  L L 
Sbjct: 172 NMESMTDLALSQNKLTGSIPSSLGN-LKNLMVLYLYENYLTGVIPPELGNMESMTDLALS 230

Query: 113 HNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLR-TI 171
            NK TG +P  +GNL  L  L L     N L G +P  +  ++ ++  LAL  NKL  +I
Sbjct: 231 QNKLTGSIPSTLGNLKNLMVLYL---YENYLTGVIPPEIG-NMESMTNLALSQNKLTGSI 286

Query: 172 PNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLT 231
           P+S+ N   LTLL L +N  +G +P   GN+  +  L+L NN LT        S  SSL 
Sbjct: 287 PSSLGNLKNLTLLSLFQNYLTGGIPPKLGNIESMIDLELSNNKLT-------GSIPSSLG 339

Query: 232 NCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIP--------------- 276
           N   L +L L+ N L+G++PP +GN  +S+      + +L GSIP               
Sbjct: 340 NLKNLTILYLYENYLTGVIPPELGNM-ESMIDLQLNNNKLTGSIPSSFGNLKNLTYLYLY 398

Query: 277 ---------QEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDL 327
                    QE+GN+  +I+L L  N L G++P + G   +L+ L+L  N+L G+IP  +
Sbjct: 399 LNYLTGVIPQELGNMESMINLDLSQNKLTGSVPDSFGNFTKLESLYLRVNHLSGAIPPGV 458

Query: 328 CH 329
            +
Sbjct: 459 AN 460

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FZ59|PEPR2_ARATH Leucine-rich repeat receptor-like protein kinase PEPR2 OS=Arabidopsis thaliana GN=PEPR2 PE=1 SV=1

 Score =  129 bits (325), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 102/301 (33%), Positives = 156/301 (51%), Gaps = 36/301 (11%)

Query: 51  FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLW 110
            + I SL  + + +N+L+G LP ++  +L  L++L L +NGF+G IP+SL     L+ + 
Sbjct: 360 IWKIQSLTQMLVYNNTLTGELPVEVT-QLKHLKKLTLFNNGFYGDIPMSLGLNRSLEEVD 418

Query: 111 LEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPST----------------LSVS 154
           L  N+FTG +P ++ +  KLR  +LG    N LHG +P++                LS  
Sbjct: 419 LLGNRFTGEIPPHLCHGQKLRLFILG---SNQLHGKIPASIRQCKTLERVRLEDNKLSGV 475

Query: 155 LP------NLKWLALGMNKLR-TIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSL 207
           LP      +L ++ LG N    +IP S+ +   L  ++L +N  +GL+P   GNL+ L L
Sbjct: 476 LPEFPESLSLSYVNLGSNSFEGSIPRSLGSCKNLLTIDLSQNKLTGLIPPELGNLQSLGL 535

Query: 208 LDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAY 267
           L+L +NYL       E    S L+ C  L    + SN L+G +P    ++  SL      
Sbjct: 536 LNLSHNYL-------EGPLPSQLSGCARLLYFDVGSNSLNGSIPSSFRSWK-SLSTLVLS 587

Query: 268 DCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQ-GLFLFGNNLQGSIPSD 326
           D    G+IPQ +  L+ L DLR+  N   G IP++VG L+ L+ GL L  N   G IP+ 
Sbjct: 588 DNNFLGAIPQFLAELDRLSDLRIARNAFGGKIPSSVGLLKSLRYGLDLSANVFTGEIPTT 647

Query: 327 L 327
           L
Sbjct: 648 L 648

Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  129 bits (323), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 105/301 (34%), Positives = 153/301 (50%), Gaps = 33/301 (10%)

Query: 53  NISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLE 112
           N +SL +   + N L+GSLP +L NRL +L+ L L  N F G+IP  L     +Q+L L 
Sbjct: 214 NCTSLALFAAAFNRLNGSLPAEL-NRLKNLQTLNLGDNSFSGEIPSQLGDLVSIQYLNLI 272

Query: 113 HNKFTGRLPENIGNLSKLRSLVLG--------HK-------------AHNSLHGHLPSTL 151
            N+  G +P+ +  L+ L++L L         H+             A N L G LP T+
Sbjct: 273 GNQLQGLIPKRLTELANLQTLDLSSNNLTGVIHEEFWRMNQLEFLVLAKNRLSGSLPKTI 332

Query: 152 SVSLPNLKWLALGMNKLR-TIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDL 210
             +  +LK L L   +L   IP  I+N   L LL+L  N+ +G +P++   L  L+ L L
Sbjct: 333 CSNNTSLKQLFLSETQLSGEIPAEISNCQSLKLLDLSNNTLTGQIPDSLFQLVELTNLYL 392

Query: 211 GNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCE 270
            NN L       E +  SS++N   L+   L+ N L G +P  IG F   L+  Y Y+  
Sbjct: 393 NNNSL-------EGTLSSSISNLTNLQEFTLYHNNLEGKVPKEIG-FLGKLEIMYLYENR 444

Query: 271 LKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDL--C 328
             G +P EIGN   L ++    N L+G IP+++GRL+ L  L L  N L G+IP+ L  C
Sbjct: 445 FSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGRLKDLTRLHLRENELVGNIPASLGNC 504

Query: 329 H 329
           H
Sbjct: 505 H 505

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	331
147853795	1420	hypothetical protein VITISV_005816 [Viti	0.842	0.196	0.443	1e-58
359485451	1454	PREDICTED: LRR receptor-like serine/thre	0.842	0.191	0.44	2e-58
255572272	1089	serine-threonine protein kinase, plant-t	0.833	0.253	0.440	4e-58
359485453	1202	PREDICTED: probable LRR receptor-like se	0.842	0.232	0.436	1e-57
359483685	1046	PREDICTED: LRR receptor-like serine/thre	0.842	0.266	0.437	3e-56
359497186	1140	PREDICTED: LRR receptor-like serine/thre	0.927	0.269	0.394	5e-56
359483677	1229	PREDICTED: LRR receptor-like serine/thre	0.842	0.227	0.421	9e-56
224139658	1019	predicted protein [Populus trichocarpa]	0.839	0.272	0.45	3e-55
147776333	1205	hypothetical protein VITISV_000078 [Viti	0.842	0.231	0.421	9e-55
147769371	1241	hypothetical protein VITISV_010511 [Viti	0.842	0.224	0.415	8e-54

>gi|147853795|emb|CAN81714.1| hypothetical protein VITISV_005816 [Vitis vinifera]

 Score =  233 bits (593), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 144/325 (44%), Positives = 182/325 (56%), Gaps = 46/325 (14%)

Query: 51  FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLW 110
            +NISSL+MI L+ NSL GSLP D+C  L +L+ L L  N   GQ+P +LS C QL  L 
Sbjct: 331 IFNISSLQMIDLTDNSLHGSLPMDICKHLHNLQGLYLSFNQLSGQLPTTLSLCGQLLSLS 390

Query: 111 LEHNKFTGRLPENIGNLSKLRSLVLGHK-------------------------------- 138
           L  N+FTG +P + GNL+ L+ L L                                   
Sbjct: 391 LWGNRFTGNIPPSFGNLTVLQDLELXENNIQGNIPNELGNLINLQNLKLSVNNLTGIIPE 450

Query: 139 -------------AHNSLHGHLPSTLSVSLPNLKWLALGMNKLR-TIPNSITNASELTLL 184
                        A N   G LPS++   LP+L+ LA+G N+    IP SI+N SELT+L
Sbjct: 451 AIFNISKLQTLXLAQNHFSGSLPSSIGTQLPDLEGLAIGXNEFSGIIPMSISNMSELTVL 510

Query: 185 ELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSN 244
           ++  N F+G VP   GNLR L  L+LG N LT   ST+E  FL+SLTNC +L+ L +  N
Sbjct: 511 DIWANFFTGDVPKDLGNLRRLEFLNLGFNQLTDEHSTSEVGFLTSLTNCKFLRRLWIEDN 570

Query: 245 QLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVG 304
            L GILP  +GN S SL+ F A  C+ KG+IP  IGNL  LIDLRL DNDL G IP + G
Sbjct: 571 PLKGILPNSLGNLSISLESFDASACQFKGTIPTGIGNLINLIDLRLNDNDLTGLIPISFG 630

Query: 305 RLQQLQGLFLFGNNLQGSIPSDLCH 329
            LQ+LQ   + GN + GSIPS LCH
Sbjct: 631 HLQKLQWFAISGNRIHGSIPSVLCH 655

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485451|ref|XP_002276944.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera]

 Score =  232 bits (592), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 143/325 (44%), Positives = 186/325 (57%), Gaps = 46/325 (14%)

Query: 51  FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLW 110
            +NISSL++  L+ NSL GSLP D+   LP+L++L L  N   GQ+P +LS C QLQ L 
Sbjct: 585 IFNISSLQIFDLTDNSLLGSLPMDIYKHLPNLQELYLSWNKLSGQLPSTLSLCGQLQSLS 644

Query: 111 LEHNKFTGRLPENIGNLSKLRSLVLGHK-------------------------------- 138
           L  N+FTG +P + GNL+ L+ L LG                                  
Sbjct: 645 LWGNRFTGNIPPSFGNLTALQDLELGDNNIQGNIPNELGNLINLQNLKLSENNLTGIIPE 704

Query: 139 -------------AHNSLHGHLPSTLSVSLPNLKWLALGMNKLR-TIPNSITNASELTLL 184
                        A N   G LPS+L   LP+L+ LA+G N+    IP SI+N SELT L
Sbjct: 705 AIFNISKLQSLSLAQNHFSGSLPSSLGTQLPDLEGLAIGRNEFSGIIPMSISNMSELTEL 764

Query: 185 ELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSN 244
           ++  N F+G VP   GNLR L  L+LG+N LT   S +E  FL+SLTNC +L+ L +  N
Sbjct: 765 DIWDNFFTGDVPKDLGNLRRLEFLNLGSNQLTDEHSASEVGFLTSLTNCNFLRTLWIEDN 824

Query: 245 QLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVG 304
            L GILP  +GN S SL+ F A  C+ +G+IP  IGNL  LI L L DNDL G IPTT+G
Sbjct: 825 PLKGILPNSLGNLSISLESFDASACQFRGTIPTGIGNLTSLISLELGDNDLTGLIPTTLG 884

Query: 305 RLQQLQGLFLFGNNLQGSIPSDLCH 329
           +L++LQ L + GN L+GSIP+DLC 
Sbjct: 885 QLKKLQELGIAGNRLRGSIPNDLCR 909

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572272|ref|XP_002527075.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223533580|gb|EEF35319.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  231 bits (588), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 142/322 (44%), Positives = 188/322 (58%), Gaps = 46/322 (14%)

Query: 53  NISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLE 112
           ++ SLK I L  N+LSG+L   LCN+   L+ L L  N  +GQIP  L KC +L+ L L 
Sbjct: 213 DLPSLKFIYLQVNNLSGNLKEILCNQNSKLQLLNLAGNQLYGQIPSDLYKCKELRSLALH 272

Query: 113 HNKFTGRLPENIGNLSKLRSLVLGHK---------------------------------- 138
            NKFTG +P  IGNL+KL+ L LG                                    
Sbjct: 273 ANKFTGSIPRTIGNLTKLKWLSLGRNNLTGRIPLEIGNLQNLQIVHLSFNNLNGSIPHAL 332

Query: 139 -----------AHNSLHGHLPSTLSVSLPNLKWLALGMNKLR-TIPNSITNASELTLLEL 186
                        N+L G+LP++L + LPNL WL LG+NKL   IP+ I+NAS+LT+LEL
Sbjct: 333 FNISTMKWIAMTSNNLLGNLPTSLGLHLPNLIWLYLGINKLSGPIPSYISNASKLTILEL 392

Query: 187 GKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQL 246
             NSF+G +P++ G+LR L  L LG N L+++ ++ E +  SSL NC  LK L L  N L
Sbjct: 393 PSNSFTGFIPDSLGDLRNLQTLKLGANLLSSKKTSQELTIFSSLKNCQNLKYLWLSYNPL 452

Query: 247 SGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRL 306
            G LP  +GN S+SL+ F A D  +KGS+ + IGNL+ L  L L +NDL G IPTT+G L
Sbjct: 453 DGYLPHSVGNLSNSLESFLASDGLIKGSVHESIGNLSSLTRLNLGNNDLTGRIPTTIGTL 512

Query: 307 QQLQGLFLFGNNLQGSIPSDLC 328
           + LQGL+L GN+L GSIPS+LC
Sbjct: 513 KHLQGLYLHGNDLDGSIPSELC 534

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485453|ref|XP_003633276.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Vitis vinifera]

 Score =  229 bits (584), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 142/325 (43%), Positives = 181/325 (55%), Gaps = 46/325 (14%)

Query: 51  FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLW 110
            +NISSL+ I  ++NSLSGSLP D+C  LP+L+ L+L  N   GQ+P +LS C +L  L 
Sbjct: 330 IFNISSLQEIGFANNSLSGSLPMDICKHLPNLQWLLLSLNQLSGQLPTTLSLCGELLTLT 389

Query: 111 LEHNKFTGRLPENIGNLSKLRSLVLGHK-------------------------------- 138
           L +N FTG +P  IGNLSKL  +                                     
Sbjct: 390 LAYNNFTGSIPREIGNLSKLEQIYFRRSSFTGNIPKELGNLVNLQFLSLNVNNLTGIVPE 449

Query: 139 -------------AHNSLHGHLPSTLSVSLPNLKWLALGMNKLR-TIPNSITNASELTLL 184
                        A N L G LPS++   LPNL+ L +G N+    IP SI+N S L  L
Sbjct: 450 AIFNISKLQVLSLAGNHLSGSLPSSIGSWLPNLEQLLIGGNEFSGIIPMSISNMSNLISL 509

Query: 185 ELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSN 244
           ++  N F G VP   GNLR L LL L +N LT   S +E +FL+SLTNCI+L+ L +  N
Sbjct: 510 DISDNFFIGNVPKDLGNLRQLQLLGLSHNQLTNEHSASELAFLTSLTNCIFLRTLSISDN 569

Query: 245 QLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVG 304
            L G++P  +GN S SL+  YA DC+L+G+IP  I NL  LI LRL DNDL G IPT  G
Sbjct: 570 PLKGMIPNSLGNLSISLEIIYASDCQLRGTIPTGISNLTNLIGLRLDDNDLTGLIPTPFG 629

Query: 305 RLQQLQGLFLFGNNLQGSIPSDLCH 329
           RLQ+LQ L +  N + GSIPS LCH
Sbjct: 630 RLQKLQMLSISQNRIHGSIPSGLCH 654

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483685|ref|XP_002263372.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR-like [Vitis vinifera]

 Score =  225 bits (573), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 136/311 (43%), Positives = 181/311 (58%), Gaps = 32/311 (10%)

Query: 51  FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLW 110
            + +SSL+ I  ++NSLSGSLP D+C  LP+L+ L L  N   GQ+P +LS C +L  L 
Sbjct: 191 IFTVSSLQRIIFANNSLSGSLPMDICKHLPNLQGLYLSQNHLSGQLPTTLSLCRELLSLA 250

Query: 111 LEHNKFTGRLPENIGNLSKLRSLVLGHKA------------------------------- 139
           L  NKFTG +P  IGNLSKL  + L   +                               
Sbjct: 251 LPMNKFTGSIPREIGNLSKLEEIDLSENSLIGSIPTSFGNLMTLKFLSFNISKLQTLGLV 310

Query: 140 HNSLHGHLPSTLSVSLPNLKWLALGMNKLR-TIPNSITNASELTLLELGKNSFSGLVPNT 198
            N L G LPS++   LP+L+ L +G+N+   TIP SI+N S+LT+L L  NSF+G VP  
Sbjct: 311 QNHLSGSLPSSIGTWLPDLEGLYIGINEFSGTIPMSISNMSKLTVLSLSDNSFTGNVPKD 370

Query: 199 FGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFS 258
             NL  L  LDL  N LT     +   FL+SLTNC +L+ L +  N L+G LP  +GN  
Sbjct: 371 LCNLTKLQFLDLAYNQLTDEHLASGVGFLTSLTNCKFLRNLWIGYNPLTGTLPNSLGNLP 430

Query: 259 DSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNN 318
            +L+ F A  C+ +G+IP  IGNL  LI L L  NDL G+IPTT+G+LQ+LQ L + GN 
Sbjct: 431 IALEIFIASACQFRGTIPTGIGNLTNLIWLDLGANDLTGSIPTTLGQLQKLQALSIVGNR 490

Query: 319 LQGSIPSDLCH 329
           ++GSIP+DLCH
Sbjct: 491 IRGSIPNDLCH 501

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359497186|ref|XP_003635448.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  224 bits (570), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 141/357 (39%), Positives = 194/357 (54%), Gaps = 50/357 (14%)

Query: 19  MTTVKNITTDQSALLAFKAHIADPYSVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNR 78
           +  ++ ++   ++  AFK    D    L     +N+SSL++I  + NSLSGSLP D+C  
Sbjct: 243 LVELQRLSLQNNSFTAFK----DISKALLFAEIFNVSSLQVIAFTDNSLSGSLPKDICKH 298

Query: 79  LPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHK 138
           LP+L+ L L  N   GQ+P +LS C +L  L L  NKF G +P+ IGNLSKL  + LG  
Sbjct: 299 LPNLQGLSLSQNHLSGQLPTTLSLCGELLFLSLSFNKFRGSIPKEIGNLSKLEEIYLGTN 358

Query: 139 A---------------------------------------------HNSLHGHLPSTLSV 153
           +                                              N L G LPS++  
Sbjct: 359 SLIGSIPTSFGNLKALKFLNLGINNLTGTVPEAIFNISKLQSLAMVKNHLSGSLPSSIGT 418

Query: 154 SLPNLKWLALGMNKLR-TIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGN 212
            LP+L+ L +  N+    IP SI+N S+LT+L L  NSF+G VP   GNL  L +LDL  
Sbjct: 419 WLPDLEGLFIAGNEFSGIIPMSISNMSKLTVLGLSANSFTGNVPKDLGNLTKLKVLDLAG 478

Query: 213 NYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELK 272
           N LT     +E  FL+SLTNC +LK L + +    G LP  +GN   +L+ F A  C+ +
Sbjct: 479 NQLTDEHVASEVGFLTSLTNCKFLKNLWIGNIPFKGTLPNSLGNLPIALESFIASACQFR 538

Query: 273 GSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDLCH 329
           G+IP  IGNL  LI L L  NDL G+IPTT+G+LQ+LQ L++ GN ++GSIP+DLCH
Sbjct: 539 GTIPTGIGNLTNLIRLDLGANDLTGSIPTTLGQLQKLQWLYIAGNRIRGSIPNDLCH 595

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483677|ref|XP_003633000.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera]

 Score =  223 bits (568), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 137/325 (42%), Positives = 181/325 (55%), Gaps = 46/325 (14%)

Query: 51  FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLW 110
            +N+SSL++I  + NSLSGSLP D+C  LP+L+ L L  N   GQ+P +LS C +L  L 
Sbjct: 360 IFNVSSLQVIAFTDNSLSGSLPKDICKHLPNLQGLSLSQNHLSGQLPTTLSLCGELLFLS 419

Query: 111 LEHNKFTGRLPENIGNLSKLRSLVLGHKA------------------------------- 139
           L  NKF G +P+ IGNLSKL  + LG  +                               
Sbjct: 420 LSFNKFRGSIPKEIGNLSKLEKIYLGTNSLIGSIPTSFGNLKALKFLNLGINNLTGTVPE 479

Query: 140 --------------HNSLHGHLPSTLSVSLPNLKWLALGMNKLR-TIPNSITNASELTLL 184
                          N L G LPS++   L +L+ L +  N+    IP SI+N S+LT+L
Sbjct: 480 AIFNISKLQSLAMVKNHLSGSLPSSIGTWLSDLEGLFIAGNEFSGIIPMSISNMSKLTVL 539

Query: 185 ELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSN 244
            L  NSF+G VP   GNL  L +LDL  N LT     +E  FL+SLTNC +LK L + +N
Sbjct: 540 GLSANSFTGNVPKDLGNLTKLKVLDLAGNQLTDEHVASEVGFLTSLTNCKFLKNLWIGNN 599

Query: 245 QLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVG 304
              G LP  +GN   +L+ F A  C+ +G+IP  IGNL  LI L L  NDL G+IPTT+G
Sbjct: 600 PFKGTLPNSLGNLPIALESFIASACQFRGTIPTRIGNLTNLIWLDLGANDLTGSIPTTLG 659

Query: 305 RLQQLQGLFLFGNNLQGSIPSDLCH 329
           RL++LQ L + GN L+GSIP+DLCH
Sbjct: 660 RLKKLQKLHIVGNRLRGSIPNDLCH 684

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139658|ref|XP_002323215.1| predicted protein [Populus trichocarpa] gi|222867845|gb|EEF04976.1| predicted protein [Populus trichocarpa]

 Score =  221 bits (563), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 135/300 (45%), Positives = 178/300 (59%), Gaps = 22/300 (7%)

Query: 51  FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLW 110
            +NISSLK++ L  N L GSLP ++C+ LP LE L+L SN   GQIP  L KC +LQ LW
Sbjct: 166 IFNISSLKVLDLMFNGLFGSLPKNMCDHLPRLEMLLLSSNQLSGQIPSDLFKCRELQLLW 225

Query: 111 LEHNKFTGRLPENIGNLSKLRSLVLG---------------------HKAHNSLHGHLPS 149
           L +N FTG +PE +G L  L  L LG                         N+L G +P 
Sbjct: 226 LPYNNFTGVIPEELGFLPMLEVLNLGVNMLSGDLPRSIFNMTSLRTMQICCNNLSGSIPQ 285

Query: 150 TLSVSLPNLKWLALGMNKLR-TIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLL 208
             S+ LPNL+ L L +N +  ++P  + N S L +L+L  N  +G V   FGNLR L +L
Sbjct: 286 ENSIDLPNLEELQLNLNGITGSMPRFLGNMSRLEILDLSYNKMTGNVLQEFGNLRALQVL 345

Query: 209 DLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYD 268
            L +N  T   S+   +F++SLTN   LK L +  N L G+LP  +GN S  L +FY Y 
Sbjct: 346 SLQSNSFTNHPSSQTLNFITSLTNSRQLKELHIGDNPLDGMLPNSVGNLSSFLTKFYVYA 405

Query: 269 CELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDLC 328
            +LKG+IP EIGNL+ LI L L++N L G IPTTVG L+++Q L+L  NNL GSIPSD+C
Sbjct: 406 SKLKGNIPGEIGNLSNLIVLSLEENSLMGPIPTTVGGLRKIQVLYLHKNNLNGSIPSDIC 465

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147776333|emb|CAN72034.1| hypothetical protein VITISV_000078 [Vitis vinifera]

 Score =  220 bits (560), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 137/325 (42%), Positives = 181/325 (55%), Gaps = 46/325 (14%)

Query: 51  FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLW 110
            +NISSL++I  ++NSLSGSLP  +C  LP+L+ L L  N   GQ+P +LS C +L  L 
Sbjct: 336 IFNISSLQVIDFTNNSLSGSLPMGICKHLPNLQGLYLAQNHLSGQLPTTLSLCGELLFLS 395

Query: 111 LEHNKFTGRLPENIGNLSKLRSLVLGHKA------------------------------- 139
           L  NKF G +P  IGNLSKL  + L   +                               
Sbjct: 396 LSFNKFRGSIPREIGNLSKLEHIDLRSNSLVGSIPTSFGNLKALKFLNLGINFLTGTVPE 455

Query: 140 --------------HNSLHGHLPSTLSVSLPNLKWLALGMNKLR-TIPNSITNASELTLL 184
                          N L G LPS++   LP+L+ L +G N+   TIP SI+N S+LT+L
Sbjct: 456 AIFNISELQNLALVQNHLSGSLPSSIGTWLPDLEGLYIGANEFSGTIPMSISNMSKLTVL 515

Query: 185 ELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSN 244
            L  NSF+G VP    NL  L  L+L +N LT     +   FL+SLTNC +L+ L +  N
Sbjct: 516 SLSDNSFTGNVPKDLCNLTKLKFLNLAHNQLTDEHLASGVGFLTSLTNCKFLRYLWIGYN 575

Query: 245 QLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVG 304
            L G LP  +GN   +L+ F AY C+ +G+IP  IGNL  LI L L  NDL G+IPTT+G
Sbjct: 576 PLKGTLPNSLGNLPIALESFTAYACQFRGTIPTGIGNLTNLIWLDLGANDLTGSIPTTLG 635

Query: 305 RLQQLQGLFLFGNNLQGSIPSDLCH 329
           RLQ+LQ L + GN ++GSIP+DLCH
Sbjct: 636 RLQKLQRLHIAGNRIRGSIPNDLCH 660

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147769371|emb|CAN72496.1| hypothetical protein VITISV_010511 [Vitis vinifera]

 Score =  217 bits (552), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 135/325 (41%), Positives = 180/325 (55%), Gaps = 46/325 (14%)

Query: 51  FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLW 110
            +NISSL++I  S+NSLSGSLP D+C  LP+L+ L L  N   GQ+P +LS C +L +L 
Sbjct: 372 IFNISSLQIIDFSNNSLSGSLPMDICKHLPNLQGLYLLQNHLSGQLPTTLSLCGELLYLS 431

Query: 111 LEHNKFTGRLPENIGNLSKLRSLVLGHKA------------------------------- 139
           L  NKF G +P  IGNLSKL  + L   +                               
Sbjct: 432 LAVNKFRGSIPREIGNLSKLEDISLRSNSLVGSIPTSFGNLMALKYLDLGMNFLTGTVPE 491

Query: 140 --------------HNSLHGHLPSTLSVSLPNLKWLALGMNKLR-TIPNSITNASELTLL 184
                          N L G LP ++   LP+L+ L +G NK   TIP SI+N S+L  L
Sbjct: 492 AIFNISELQILVLVQNHLSGSLPPSIGTWLPDLEGLYIGSNKFSGTIPMSISNMSKLIQL 551

Query: 185 ELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSN 244
           ++  NSF+G VP   GNL  L +L+L  N LT     +   FL+SLTNC +L+ L +  N
Sbjct: 552 QVWDNSFTGNVPKDLGNLTKLEVLNLAANQLTNEHLASGVGFLTSLTNCKFLRHLWIDDN 611

Query: 245 QLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVG 304
              G LP  +GN   +L+ F A  C+ +G+IP  IGNL  LI+L L  NDL  +IPTT+G
Sbjct: 612 PFKGTLPNSLGNLPIALESFTASACQFRGTIPTGIGNLTNLIELDLGANDLTRSIPTTLG 671

Query: 305 RLQQLQGLFLFGNNLQGSIPSDLCH 329
           RLQ+LQ L + GN ++GSIP+DLCH
Sbjct: 672 RLQKLQRLHIAGNRIRGSIPNDLCH 696

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	331
UNIPROTKB|Q40640	1025	Xa21 "Receptor kinase-like pro	0.746	0.240	0.372	5.6e-33
UNIPROTKB|O24435	813	O24435 "Receptor kinase-like p	0.749	0.305	0.338	4e-32
TAIR|locus:2079142	1010	AT3G47570 [Arabidopsis thalian	0.688	0.225	0.4	4.6e-31
UNIPROTKB|P93194	1109	INRPK1 "Receptor-like protein	0.743	0.221	0.353	5.5e-31
TAIR|locus:2149922	1031	EFR "EF-TU receptor" [Arabidop	0.809	0.259	0.328	6.5e-31
TAIR|locus:2011339	1120	AT1G35710 [Arabidopsis thalian	0.791	0.233	0.336	1.4e-29
TAIR|locus:2120362	1249	GSO1 "GASSHO1" [Arabidopsis th	0.752	0.199	0.345	5.6e-29
TAIR|locus:2085949	1141	AT3G24240 [Arabidopsis thalian	0.776	0.225	0.362	1.6e-28
TAIR|locus:2075661	1025	AT3G47110 [Arabidopsis thalian	0.821	0.265	0.345	2.9e-28
TAIR|locus:2079157	1011	AT3G47580 [Arabidopsis thalian	0.749	0.245	0.359	2e-27

UNIPROTKB|Q40640 Xa21 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)]

 Score = 371 (135.7 bits), Expect = 5.6e-33, P = 5.6e-33
 Identities = 95/255 (37%), Positives = 138/255 (54%)

Query:    72 PNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLR 131
             P+ L N L SL++  L  N   G IP SL + + L  + L  N  +G +P +I NLS LR
Sbjct:   193 PSALGN-LTSLQEFDLSFNRLSGAIPSSLGQLSSLLTMNLGQNNLSGMIPNSIWNLSSLR 251

Query:   132 SLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLR-TIPNSITNASELTLLELGKNS 190
             +  +     N L G +P+    +L  L+ + +G N+    IP S+ NAS LT++++  N 
Sbjct:   252 AFSV---RENKLGGMIPTNAFKTLHLLEVIDMGTNRFHGKIPASVANASHLTVIQIYGNL 308

Query:   191 FSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGIL 250
             FSG++ + FG LR L+ L L  N   TR    +W F+S LTNC  L+ L L  N L G+L
Sbjct:   309 FSGIITSGFGRLRNLTELYLWRNLFQTREQD-DWGFISDLTNCSKLQTLNLGENNLGGVL 367

Query:   251 PPLIGNFSDSLQQFYAYDC-ELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRXXXX 309
             P    N S SL  F A +  ++ GSIP++IGNL GL  L L +N+  G++P+++GR    
Sbjct:   368 PNSFSNLSTSLS-FLALELNKITGSIPKDIGNLIGLQHLYLCNNNFRGSLPSSLGRLKNL 426

Query:   310 XXXXXXXXXXXXSIP 324
                         SIP
Sbjct:   427 GILLAYENNLSGSIP 441

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|O24435 O24435 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)]

 Score = 361 (132.1 bits), Expect = 4.0e-32, P = 4.0e-32
 Identities = 86/254 (33%), Positives = 134/254 (52%)

Query:    53 NISSLKMIRXXXXXXXXXXPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLE 112
             N++SL ++           P+ L  +L  L  L L  N   G IP S  +  +L  L L 
Sbjct:   148 NLTSLSVLELTNNTLSGAIPSSL-GKLTGLTDLALAENTLSGSIPSSFGQLRRLSFLSLA 206

Query:   113 HNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLR-TI 171
              N  +G +P+ I N+S   SL +     N L G LP+    +LP+L+ + +  N+    I
Sbjct:   207 FNNLSGAIPDPIWNIS---SLTIFEVISNKLSGTLPTNAFSNLPSLQEVYMYYNQFHGRI 263

Query:   172 PNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLT 231
             P SI NAS +++  +G NSFSG+VP   G +R L  L+L    L+    T +W F+++LT
Sbjct:   264 PASIGNASNISIFTIGLNSFSGVVPPEIGRMRNLQRLELPET-LSEAEETNDWKFMTALT 322

Query:   232 NCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQ 291
             NC  L+ + L   +  G+LP  + N S SL      D ++ GS+P++IGNL  L  L L 
Sbjct:   323 NCSNLQEVELGGCKFGGVLPDSVSNLSSSLVSLSIRDNKISGSLPRDIGNLVNLQYLSLA 382

Query:   292 DNDLNGTIPTTVGR 305
             +N L G++P++  +
Sbjct:   383 NNSLTGSLPSSFSK 396

GO:0004672 "protein kinase activity" evidence=IDA

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2079142 AT3G47570 [Arabidopsis thaliana (taxid:3702)]

 Score = 353 (129.3 bits), Expect = 4.6e-31, P = 4.6e-31
 Identities = 94/235 (40%), Positives = 129/235 (54%)

Query:    72 PNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLR 131
             P  L N L  LEQL L  N   G+IP  +++ TQ+  L L  N F+G  P  + NLS L+
Sbjct:   179 PTSLGN-LTLLEQLALSHNNLEGEIPSDVAQLTQIWSLQLVANNFSGVFPPALYNLSSLK 237

Query:   132 SLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLR-TIPNSITNASELTLLELGKNS 190
              L +G+   N   G L   L + LPNL    +G N    +IP +++N S L  L + +N+
Sbjct:   238 LLGIGY---NHFSGRLRPDLGILLPNLLSFNMGGNYFTGSIPTTLSNISTLERLGMNENN 294

Query:   191 FSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGIL 250
              +G +P TFGN+  L LL L  N L + SS  +  FL+SLTNC  L+ LG+  N+L G L
Sbjct:   295 LTGSIP-TFGNVPNLKLLFLHTNSLGSDSSR-DLEFLTSLTNCTQLETLGIGRNRLGGDL 352

Query:   251 PPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGR 305
             P  I N S  L         + GSIP +IGNL  L  L L  N L+G +PT++G+
Sbjct:   353 PISIANLSAKLVTLDLGGTLISGSIPYDIGNLINLQKLILDQNMLSGPLPTSLGK 407

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|P93194 INRPK1 "Receptor-like protein kinase" [Ipomoea nil (taxid:35883)]

 Score = 353 (129.3 bits), Expect = 5.5e-31, P = 5.5e-31
 Identities = 95/269 (35%), Positives = 137/269 (50%)

Query:    77 NRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLG 136
             + L  L+++VL  NGFFG IP  L  C+ L+H+ L  N FTG +P+ +G L  LR+L L 
Sbjct:    89 SHLKHLKKVVLSGNGFFGSIPSQLGNCSLLEHIDLSSNSFTGNIPDTLGALQNLRNLSL- 147

Query:   137 HKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLR-TIPNSITNASELTLLELGKNSFSGLV 195
                 NSL G  P +L +S+P+L+ +    N L  +IP++I N SELT L L  N FSG V
Sbjct:   148 --FFNSLIGPFPESL-LSIPHLETVYFTGNGLNGSIPSNIGNMSELTTLWLDDNQFSGPV 204

Query:   196 PNTFGNLRFLSLLDLGNN-----------------YLTTRSSTTEWSFLSSLTNCIYLKV 238
             P++ GN+  L  L L +N                 YL  R+++   +      +C  +  
Sbjct:   205 PSSLGNITTLQELYLNDNNLVGTLPVTLNNLENLVYLDVRNNSLVGAIPLDFVSCKQIDT 264

Query:   239 LGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGT 298
             + L +NQ +G LPP +GN + SL++F A+ C L G IP   G L  L  L L  N  +G 
Sbjct:   265 ISLSNNQFTGGLPPGLGNCT-SLREFGAFSCALSGPIPSCFGQLTKLDTLYLAGNHFSGR 323

Query:   299 IPTTVGRXXXXXXXXXXXXXXXXSIPSDL 327
             IP  +G+                 IP +L
Sbjct:   324 IPPELGKCKSMIDLQLQQNQLEGEIPGEL 352

GO:0005524 "ATP binding" evidence=NAS

GO:0005576 "extracellular region" evidence=NAS

GO:0005886 "plasma membrane" evidence=NAS

GO:0006468 "protein phosphorylation" evidence=NAS

GO:0019199 "transmembrane receptor protein kinase activity" evidence=NAS

TAIR|locus:2149922 EFR "EF-TU receptor" [Arabidopsis thaliana (taxid:3702)]

 Score = 339 (124.4 bits), Expect = 6.5e-31, Sum P(2) = 6.5e-31
 Identities = 90/274 (32%), Positives = 134/274 (48%)

Query:    53 NISSLKMIRXXXXXXXXXXPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLE 112
             ++S L ++           P  L N L SL++L    N   G+IP  +++ TQ+    + 
Sbjct:   167 SLSKLAILDLSKNNLTGNFPASLGN-LTSLQKLDFAYNQMRGEIPDEVARLTQMVFFQIA 225

Query:   113 HNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLR-TI 171
              N F+G  P  + N+S L SL L   A NS  G+L +     LPNL+ L LG N+    I
Sbjct:   226 LNSFSGGFPPALYNISSLESLSL---ADNSFSGNLRADFGYLLPNLRRLLLGTNQFTGAI 282

Query:   172 PNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLT 231
             P ++ N S L   ++  N  SG +P +FG LR L  L + NN L   SS+    F+ ++ 
Sbjct:   283 PKTLANISSLERFDISSNYLSGSIPLSFGKLRNLWWLGIRNNSLGNNSSSG-LEFIGAVA 341

Query:   232 NCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQ 291
             NC  L+ L +  N+L G LP  I N S +L   +     + G+IP +IGNL  L +L L+
Sbjct:   342 NCTQLEYLDVGYNRLGGELPASIANLSTTLTSLFLGQNLISGTIPHDIGNLVSLQELSLE 401

Query:   292 DNDLNGTIPTTVGRXXXXXXXXXXXXXXXXSIPS 325
              N L+G +P + G+                 IPS
Sbjct:   402 TNMLSGELPVSFGKLLNLQVVDLYSNAISGEIPS 435

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010204 "defense response signaling pathway, resistance gene-independent" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0002764 "immune response-regulating signaling pathway" evidence=IMP

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0019199 "transmembrane receptor protein kinase activity" evidence=TAS

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2011339 AT1G35710 [Arabidopsis thaliana (taxid:3702)]

 Score = 340 (124.7 bits), Expect = 1.4e-29, P = 1.4e-29
 Identities = 93/276 (33%), Positives = 137/276 (49%)

Query:    53 NISSLKMIRXXXXXXXXXXPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLE 112
             N+ +L ++           P++L N + S+  L L  N   G IP SL     L  L+L 
Sbjct:   148 NLKNLTVLYLHQNYLTSVIPSELGN-MESMTDLALSQNKLTGSIPSSLGNLKNLMVLYLY 206

Query:   113 HNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLR-TI 171
              N  TG +P  +GN+  +  L L   + N L G +PSTL  +L NL  L L  N L   I
Sbjct:   207 ENYLTGVIPPELGNMESMTDLAL---SQNKLTGSIPSTLG-NLKNLMVLYLYENYLTGVI 262

Query:   172 PNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLT 231
             P  I N   +T L L +N  +G +P++ GNL+ L+LL L  NYLT          L ++ 
Sbjct:   263 PPEIGNMESMTNLALSQNKLTGSIPSSLGNLKNLTLLSLFQNYLTGGIPPK----LGNIE 318

Query:   232 NCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQ 291
             + I L+   L +N+L+G +P  +GN  + L   Y Y+  L G IP E+GN+  +IDL+L 
Sbjct:   319 SMIDLE---LSNNKLTGSIPSSLGNLKN-LTILYLYENYLTGVIPPELGNMESMIDLQLN 374

Query:   292 DNDLNGTIPTTVGRXXXXXXXXXXXXXXXXSIPSDL 327
             +N L G+IP++ G                  IP +L
Sbjct:   375 NNKLTGSIPSSFGNLKNLTYLYLYLNYLTGVIPQEL 410

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)]

 Score = 335 (123.0 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 94/272 (34%), Positives = 134/272 (49%)

Query:    51 FYNISSLKMIRXXXXXXXXXXPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLW 110
             F+N+S L  +           P  +C+   +LEQLVL      G+IP+ LSKC  L+ L 
Sbjct:   307 FWNMSQLLDLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVELSKCQSLKQLD 366

Query:   111 LEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLR- 169
             L +N   G +PE +  L +L  L L H  +N+L G L  ++S +L NL+WL L  N L  
Sbjct:   367 LSNNSLAGSIPEALFELVELTDLYL-H--NNTLEGTLSPSIS-NLTNLQWLVLYHNNLEG 422

Query:   170 TIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDL-GN---------------- 212
              +P  I+   +L +L L +N FSG +P   GN   L ++D+ GN                
Sbjct:   423 KLPKEISALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSIGRLKEL 482

Query:   213 NYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELK 272
             N L  R +       +SL NC  L +L L  NQLSG +P   G F   L+Q   Y+  L+
Sbjct:   483 NLLHLRQNELVGGLPASLGNCHQLNILDLADNQLSGSIPSSFG-FLKGLEQLMLYNNSLQ 541

Query:   273 GSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVG 304
             G++P  + +L  L  + L  N LNGTI    G
Sbjct:   542 GNLPDSLISLRNLTRINLSHNRLNGTIHPLCG 573

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2085949 AT3G24240 [Arabidopsis thaliana (taxid:3702)]

 Score = 330 (121.2 bits), Expect = 1.6e-28, P = 1.6e-28
 Identities = 100/276 (36%), Positives = 141/276 (51%)

Query:    56 SLKMIRXXXXXXXXXXPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNK 115
             SL+ +           P  L + L  L+ L L SNG  G IP SLSK   L+ L L  N+
Sbjct:   106 SLQKLTISGANLTGTLPESLGDCL-GLKVLDLSSNGLVGDIPWSLSKLRNLETLILNSNQ 164

Query:   116 FTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRT--IPN 173
              TG++P +I   SKL+SL+L     N L G +P+ L   L  L+ + +G NK  +  IP+
Sbjct:   165 LTGKIPPDISKCSKLKSLIL---FDNLLTGSIPTELG-KLSGLEVIRIGGNKEISGQIPS 220

Query:   174 SITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNC 233
              I + S LT+L L + S SG +P++ G L+ L  L +   Y T  S        S L NC
Sbjct:   221 EIGDCSNLTVLGLAETSVSGNLPSSLGKLKKLETLSI---YTTMISGEIP----SDLGNC 273

Query:   234 IYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGL--IDLRLQ 291
               L  L L+ N LSG +P  IG  +  L+Q + +   L G IP+EIGN + L  IDL L 
Sbjct:   274 SELVDLFLYENSLSGSIPREIGQLT-KLEQLFLWQNSLVGGIPEEIGNCSNLKMIDLSL- 331

Query:   292 DNDLNGTIPTTVGRXXXXXXXXXXXXXXXXSIPSDL 327
              N L+G+IP+++GR                SIP+ +
Sbjct:   332 -NLLSGSIPSSIGRLSFLEEFMISDNKFSGSIPTTI 366

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2075661 AT3G47110 [Arabidopsis thaliana (taxid:3702)]

 Score = 327 (120.2 bits), Expect = 2.9e-28, P = 2.9e-28
 Identities = 96/278 (34%), Positives = 131/278 (47%)

Query:    51 FYNISSLKMIRXXXXXXXXXXPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLW 110
             F ++S L ++           P  L N L SL+ L    N   G+IP  +++  Q+    
Sbjct:   173 FGSLSKLVLLSLGRNNLTGKFPASLGN-LTSLQMLDFIYNQIEGEIPGDIARLKQMIFFR 231

Query:   111 LEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLR- 169
             +  NKF G  P  I NLS L  L +     NS  G L       LPNL+ L +G+N    
Sbjct:   232 IALNKFNGVFPPPIYNLSSLIFLSI---TGNSFSGTLRPDFGSLLPNLQILYMGINSFTG 288

Query:   170 TIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSS 229
             TIP +++N S L  L++  N  +G +P +FG L+ L LL L NN L   SS  +  FL +
Sbjct:   289 TIPETLSNISSLRQLDIPSNHLTGKIPLSFGRLQNLLLLGLNNNSLGNYSSG-DLDFLGA 347

Query:   230 LTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLR 289
             LTNC  L+ L +  N+L G LP  I N S  L +       + GSIP  IGNL  L  L 
Sbjct:   348 LTNCSQLQYLNVGFNKLGGQLPVFIANLSTQLTELSLGGNLISGSIPHGIGNLVSLQTLD 407

Query:   290 LQDNDLNGTIPTTVGRXXXXXXXXXXXXXXXXSIPSDL 327
             L +N L G +P ++G                  IPS L
Sbjct:   408 LGENLLTGKLPPSLGELSELRKVLLYSNGLSGEIPSSL 445

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2079157 AT3G47580 [Arabidopsis thaliana (taxid:3702)]

 Score = 319 (117.4 bits), Expect = 2.0e-27, P = 2.0e-27
 Identities = 92/256 (35%), Positives = 124/256 (48%)

Query:    72 PNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLR 131
             P  L N L SL+ L    N   G++P  L++ +Q+  L L  NKF G  P  I NLS L 
Sbjct:   179 PRSLGN-LTSLKSLGFTDNNIEGEVPDELARLSQMVGLGLSMNKFFGVFPPAIYNLSALE 237

Query:   132 SLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKL-RTIPNSITNASELTLLELGKNS 190
              L L     +   G L       LPN++ L LG N L   IP +++N S L    + KN 
Sbjct:   238 DLFL---FGSGFSGSLKPDFGNLLPNIRELNLGENDLVGAIPTTLSNISTLQKFGINKNM 294

Query:   191 FSG-LVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGI 249
              +G + PN FG +  L  LDL  N L + +   +  F+ SLTNC +L++L +   +L G 
Sbjct:   295 MTGGIYPN-FGKVPSLQYLDLSENPLGSYTFG-DLEFIDSLTNCTHLQLLSVGYTRLGGA 352

Query:   250 LPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRXXXX 309
             LP  I N S  L           GSIPQ+IGNL GL  L+L  N L G +PT++G+    
Sbjct:   353 LPTSIANMSTELISLNLIGNHFFGSIPQDIGNLIGLQRLQLGKNMLTGPLPTSLGKLLRL 412

Query:   310 XXXXXXXXXXXXSIPS 325
                          IPS
Sbjct:   413 GLLSLYSNRMSGEIPS 428

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_XVI000210 hypothetical protein (1019 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	331
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-36
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-34
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-32
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-30
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-25
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  139 bits (352), Expect = 1e-36
 Identities = 110/311 (35%), Positives = 157/311 (50%), Gaps = 29/311 (9%)

Query: 32  LLAFKAHIADPYSVLTK------NCFY------NISSLKMIRLSSNSLSGSLPNDLCNRL 79
           LL+FK+ I DP   L+        C +      N S +  I LS  ++SG + +    RL
Sbjct: 34  LLSFKSSINDPLKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKI-SSAIFRL 92

Query: 80  PSLEQLVLRSNGFFGQIPLSLSK-CTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHK 138
           P ++ + L +N   G IP  +    + L++L L +N FTG +P   G++  L +L L   
Sbjct: 93  PYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDL--- 147

Query: 139 AHNSLHGHLPSTLSVSLPNLKWLALGMNKLR-TIPNSITNASELTLLELGKNSFSGLVPN 197
           ++N L G +P+ +  S  +LK L LG N L   IPNS+TN + L  L L  N   G +P 
Sbjct: 148 SNNMLSGEIPNDIG-SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPR 206

Query: 198 TFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNF 257
             G ++ L  + LG N L+      E   L+SL +      L L  N L+G +P  +GN 
Sbjct: 207 ELGQMKSLKWIYLGYNNLSGEIPY-EIGGLTSLNH------LDLVYNNLTGPIPSSLGNL 259

Query: 258 SDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGN 317
            + LQ  + Y  +L G IP  I +L  LI L L DN L+G IP  V +LQ L+ L LF N
Sbjct: 260 KN-LQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSN 318

Query: 318 NLQGSIPSDLC 328
           N  G IP  L 
Sbjct: 319 NFTGKIPVALT 329

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  131 bits (332), Expect = 6e-34
 Identities = 104/293 (35%), Positives = 149/293 (50%), Gaps = 23/293 (7%)

Query: 52  YNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWL 111
           +++  L  + LS NSLSG +P +L  +L +LE L L SN F G+IP++L+   +LQ L L
Sbjct: 281 FSLQKLISLDLSDNSLSGEIP-ELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQL 339

Query: 112 EHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRT- 170
             NKF+G +P+N+G  + L  L L   + N+L G +P  L  S  NL  L L  N L   
Sbjct: 340 WSNKFSGEIPKNLGKHNNLTVLDL---STNNLTGEIPEGLCSS-GNLFKLILFSNSLEGE 395

Query: 171 IPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEW------ 224
           IP S+     L  + L  NSFSG +P+ F  L  +  LD+ NN L  R ++ +W      
Sbjct: 396 IPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQ 455

Query: 225 -------SFLSSLTNCI---YLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGS 274
                   F   L +      L+ L L  NQ SG +P  +G+ S+ L Q    + +L G 
Sbjct: 456 MLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSE-LMQLKLSENKLSGE 514

Query: 275 IPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDL 327
           IP E+ +   L+ L L  N L+G IP +   +  L  L L  N L G IP +L
Sbjct: 515 IPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNL 567

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  127 bits (321), Expect = 1e-32
 Identities = 96/287 (33%), Positives = 143/287 (49%), Gaps = 16/287 (5%)

Query: 46  LTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQ 105
           +  + F   SSL+ + LS+N+ +GS+P      +P+LE L L +N   G+IP  +   + 
Sbjct: 109 IPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFSS 165

Query: 106 LQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGM 165
           L+ L L  N   G++P ++ NL+ L  L L   A N L G +P  L   + +LKW+ LG 
Sbjct: 166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTL---ASNQLVGQIPRELG-QMKSLKWIYLGY 221

Query: 166 NKLR-TIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEW 224
           N L   IP  I   + L  L+L  N+ +G +P++ GNL+ L  L L  N L+     +  
Sbjct: 222 NNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS-- 279

Query: 225 SFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNG 284
             + SL   I L    L  N LSG +P L+     +L+  + +     G IP  + +L  
Sbjct: 280 --IFSLQKLISLD---LSDNSLSGEIPELVIQLQ-NLEILHLFSNNFTGKIPVALTSLPR 333

Query: 285 LIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDLCHWG 331
           L  L+L  N  +G IP  +G+   L  L L  NNL G IP  LC  G
Sbjct: 334 LQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSG 380

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  120 bits (303), Expect = 3e-30
 Identities = 101/274 (36%), Positives = 136/274 (49%), Gaps = 38/274 (13%)

Query: 55  SSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHN 114
           SSLK++ L  N L G +PN L N L SLE L L SN   GQIP  L +   L+ ++L +N
Sbjct: 164 SSLKVLDLGGNVLVGKIPNSLTN-LTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYN 222

Query: 115 KFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLR-TIPN 173
             +G +P  IG L+ L  L L    +N+L G +PS+L  +L NL++L L  NKL   IP 
Sbjct: 223 NLSGEIPYEIGGLTSLNHLDL---VYNNLTGPIPSSLG-NLKNLQYLFLYQNKLSGPIPP 278

Query: 174 SITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNC 233
           SI +  +L  L+L  NS SG +P     L+ L +L L +N  T +        L+SL   
Sbjct: 279 SIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA----LTSLPR- 333

Query: 234 IYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDN 293
             L+VL L SN+ SG                          IP+ +G  N L  L L  N
Sbjct: 334 --LQVLQLWSNKFSG-------------------------EIPKNLGKHNNLTVLDLSTN 366

Query: 294 DLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDL 327
           +L G IP  +     L  L LF N+L+G IP  L
Sbjct: 367 NLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSL 400

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  106 bits (266), Expect = 2e-25
 Identities = 83/251 (33%), Positives = 135/251 (53%), Gaps = 19/251 (7%)

Query: 55  SSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHN 114
           ++L ++ LS+N+L+G +P  LC+   +L +L+L SN   G+IP SL  C  L+ + L+ N
Sbjct: 356 NNLTVLDLSTNNLTGEIPEGLCSS-GNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDN 414

Query: 115 KFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNK-LRTIPN 173
            F+G LP     L  +  L +   ++N+L G + ++    +P+L+ L+L  NK    +P+
Sbjct: 415 SFSGELPSEFTKLPLVYFLDI---SNNNLQGRI-NSRKWDMPSLQMLSLARNKFFGGLPD 470

Query: 174 SITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNC 233
           S   +  L  L+L +N FSG VP   G+L  L  L L  N L+             L++C
Sbjct: 471 S-FGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSG-------EIPDELSSC 522

Query: 234 IYLKVLGLHSNQLSGILPPLIGNFSD--SLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQ 291
             L  L L  NQLSG +P    +FS+   L Q      +L G IP+ +GN+  L+ + + 
Sbjct: 523 KKLVSLDLSHNQLSGQIP---ASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNIS 579

Query: 292 DNDLNGTIPTT 302
            N L+G++P+T
Sbjct: 580 HNHLHGSLPST 590

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 68.0 bits (166), Expect = 2e-12
 Identities = 43/102 (42%), Positives = 61/102 (59%), Gaps = 8/102 (7%)

Query: 51  FYNISSLKMIRLSSNSLSGSLPNDL--CNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQH 108
             ++S L  ++LS N LSG +P++L  C +L SL+   L  N   GQIP S S+   L  
Sbjct: 495 LGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLD---LSHNQLSGQIPASFSEMPVLSQ 551

Query: 109 LWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPST 150
           L L  N+ +G +P+N+GN   + SLV  + +HN LHG LPST
Sbjct: 552 LDLSQNQLSGEIPKNLGN---VESLVQVNISHNHLHGSLPST 590

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.0 bits (148), Expect = 3e-10
 Identities = 36/90 (40%), Positives = 51/90 (56%), Gaps = 4/90 (4%)

Query: 62  LSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLP 121
           L +  L G +PND+ ++L  L+ + L  N   G IP SL   T L+ L L +N F G +P
Sbjct: 425 LDNQGLRGFIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP 483

Query: 122 ENIGNLSKLRSLVLGHKAHNSLHGHLPSTL 151
           E++G L+ LR L L     NSL G +P+ L
Sbjct: 484 ESLGQLTSLRILNLN---GNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.4 bits (144), Expect = 9e-10
 Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 1/89 (1%)

Query: 239 LGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGT 298
           LGL +  L G +P  I      LQ        ++G+IP  +G++  L  L L  N  NG+
Sbjct: 423 LGLDNQGLRGFIPNDISKLR-HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 299 IPTTVGRLQQLQGLFLFGNNLQGSIPSDL 327
           IP ++G+L  L+ L L GN+L G +P+ L
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 53.3 bits (128), Expect = 8e-08
 Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 2/77 (2%)

Query: 143 LHGHLPSTLSVSLPNLKWLALGMNKLR-TIPNSITNASELTLLELGKNSFSGLVPNTFGN 201
           L G +P+ +S  L +L+ + L  N +R  IP S+ + + L +L+L  NSF+G +P + G 
Sbjct: 430 LRGFIPNDIS-KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQ 488

Query: 202 LRFLSLLDLGNNYLTTR 218
           L  L +L+L  N L+ R
Sbjct: 489 LTSLRILNLNGNSLSGR 505

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.1 bits (125), Expect = 2e-07
 Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 1/69 (1%)

Query: 57  LKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKF 116
           L+ I LS NS+ G++P  L + + SLE L L  N F G IP SL + T L+ L L  N  
Sbjct: 444 LQSINLSGNSIRGNIPPSLGS-ITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL 502

Query: 117 TGRLPENIG 125
           +GR+P  +G
Sbjct: 503 SGRVPAALG 511

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 48.0 bits (114), Expect = 4e-06
 Identities = 58/195 (29%), Positives = 84/195 (43%), Gaps = 17/195 (8%)

Query: 53  NISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLE 112
           N+  L  + L+ N L  ++       L +L  L L +N      PL     + L+ L L 
Sbjct: 91  NLLPLPSLDLNLNRLRSNISE--LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLS 148

Query: 113 HNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIP 172
            NK    LP  + NL  L++L L     + L       L  +L NL  L L  NK+  +P
Sbjct: 149 DNKIE-SLPSPLRNLPNLKNLDLSFNDLSDL-----PKLLSNLSNLNNLDLSGNKISDLP 202

Query: 173 NSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTN 232
             I   S L  L+L  NS    + ++  NL+ LS L+L NN L             S+ N
Sbjct: 203 PEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED--------LPESIGN 253

Query: 233 CIYLKVLGLHSNQLS 247
              L+ L L +NQ+S
Sbjct: 254 LSNLETLDLSNNQIS 268

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.5 bits (113), Expect = 5e-06
 Identities = 34/116 (29%), Positives = 50/116 (43%), Gaps = 27/116 (23%)

Query: 85  LVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLH 144
           L L + G  G IP  +SK   LQ + L  N   G +P ++G+++ L  L L   ++NS +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDL---SYNSFN 479

Query: 145 GHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFG 200
           G                        +IP S+   + L +L L  NS SG VP   G
Sbjct: 480 G------------------------SIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.7 bits (111), Expect = 1e-05
 Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 1/84 (1%)

Query: 235 YLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDND 294
           +L+ + L  N + G +PP +G+ + SL+          GSIP+ +G L  L  L L  N 
Sbjct: 443 HLQSINLSGNSIRGNIPPSLGSIT-SLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS 501

Query: 295 LNGTIPTTVGRLQQLQGLFLFGNN 318
           L+G +P  +G     +  F F +N
Sbjct: 502 LSGRVPAALGGRLLHRASFNFTDN 525

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 35.6 bits (83), Expect = 0.002
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 157 NLKWLALGMNKLRTIP-NSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYL 215
           NLK L L  N+L  IP  +      L +L+L  N+ + + P  F  L  L  LDL  N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	331
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.97
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.96
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.95
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.93
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.92
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.87
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.84
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.82
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.81
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.81
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.8
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.79
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.79
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.78
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.78
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.77
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.74
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.74
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.72
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.7
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.69
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.37
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.27
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.26
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.22
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.21
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.19
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.18
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.18
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.17
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.14
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.14
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.13
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.11
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.06
PLN03150	623	hypothetical protein; Provisional	99.05
PLN03150	623	hypothetical protein; Provisional	99.02
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.02
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.95
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.91
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.87
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.8
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.56
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.5
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.47
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.46
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.43
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.41
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.38
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.29
PRK15386	426	type III secretion protein GogB; Provisional	98.27
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.27
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.27
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.09
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.05
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.04
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.96
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.89
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.85
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.83
KOG4341	483	consensus F-box protein containing LRR [General fu	97.81
PRK15386	426	type III secretion protein GogB; Provisional	97.71
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.53
KOG4341	483	consensus F-box protein containing LRR [General fu	97.21
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.04
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	97.02
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.01
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.97
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.85
KOG4308	478	consensus LRR-containing protein [Function unknown	95.82
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.68
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.45
KOG4308	478	consensus LRR-containing protein [Function unknown	95.35
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.04
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.97
smart00370	26	LRR Leucine-rich repeats, outliers.	94.97
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	93.23
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.25
smart00370	26	LRR Leucine-rich repeats, outliers.	92.25
KOG3864	221	consensus Uncharacterized conserved protein [Funct	90.61
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	90.21
KOG0473	326	consensus Leucine-rich repeat protein [Function un	87.04
KOG3864	221	consensus Uncharacterized conserved protein [Funct	86.42

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.5e-31  Score=264.62  Aligned_cols=298  Identities=34%  Similarity=0.539  Sum_probs=174.4

Q ss_pred             ChhhHHHHHHHHHhccCCCCCCCcc------------------------------------hhcCCCCccEEEcCCCcCc
Q 036258           25 ITTDQSALLAFKAHIADPYSVLTKN------------------------------------CFYNISSLKMIRLSSNSLS   68 (331)
Q Consensus        25 ~~~~~~~l~~~~~~~~~~~~~~~~~------------------------------------~~~~~~~L~~L~l~~~~i~   68 (331)
                      .+.+..++..|+..+.+|......|                                    .|..+++|++|++++|.+.
T Consensus        27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~  106 (968)
T PLN00113         27 HAEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLS  106 (968)
T ss_pred             CHHHHHHHHHHHHhCCCCcccCCCCCCCCCCCcCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccC
Confidence            3567788899988776554433333                                    1456778888888888887


Q ss_pred             cCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccccCccccccccccCC
Q 036258           69 GSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLP  148 (331)
Q Consensus        69 ~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~  148 (331)
                      +.+|..+|..+++|++|++++|.+.+..|.  +.+++|++|++++|.+.+..|..+..+++|++|++++|..   .+.++
T Consensus       107 ~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l---~~~~p  181 (968)
T PLN00113        107 GPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVL---VGKIP  181 (968)
T ss_pred             CcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcc---cccCC
Confidence            778887776777777777777776655443  3455666666666666555666666666666666644332   22233


Q ss_pred             cchhcCCCCCcEEEcCCCCCC-CCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCC-----
Q 036258          149 STLSVSLPNLKWLALGMNKLR-TIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTT-----  222 (331)
Q Consensus       149 ~~~~~~l~~L~~L~l~~~~l~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~-----  222 (331)
                      ..+. .+++|++|++++|.+. .+|..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.......     
T Consensus       182 ~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~  260 (968)
T PLN00113        182 NSLT-NLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLK  260 (968)
T ss_pred             hhhh-hCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCC
Confidence            3222 4555555555555543 34444555555555555555554444444555555555555555443210000     


Q ss_pred             ------------ccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEc
Q 036258          223 ------------EWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRL  290 (331)
Q Consensus       223 ------------~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  290 (331)
                                  ....+..+..+++|++|++++|.+.+.+|..+..+. +|+.|++++|.+.+..|..+..+++|+.|++
T Consensus       261 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L  339 (968)
T PLN00113        261 NLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQ-NLEILHLFSNNFTGKIPVALTSLPRLQVLQL  339 (968)
T ss_pred             CCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCC-CCcEEECCCCccCCcCChhHhcCCCCCEEEC
Confidence                        002333445555555555555555555555555444 6666666666666556666666666666666


Q ss_pred             cCCCCcccCCcCccCCCCCCeEeccCCeeeecCCccccC
Q 036258          291 QDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDLCH  329 (331)
Q Consensus       291 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~  329 (331)
                      ++|.+.+.+|..+..+++|+.|++++|.+++.+|+.++.
T Consensus       340 ~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~  378 (968)
T PLN00113        340 WSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS  378 (968)
T ss_pred             cCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhC
Confidence            666666666666666666777777777766666666554

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.97  E-value=5.2e-31  Score=260.72  Aligned_cols=274  Identities=33%  Similarity=0.522  Sum_probs=188.9

Q ss_pred             CCCcchhcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccc
Q 036258           45 VLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENI  124 (331)
Q Consensus        45 ~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~  124 (331)
                      .++...|..+++|++|++++|.+.+.+|.   ..+++|++|++++|.+.+..|..++.+++|++|++++|.+.+.+|..+
T Consensus       108 ~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~  184 (968)
T PLN00113        108 PIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL  184 (968)
T ss_pred             cCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhh
Confidence            34444566777777777777766655553   234555555555555554555555555555555555555544455555


Q ss_pred             cCcccccccccCcccc---------------------ccccccCCcchhcCCCCCcEEEcCCCCCC-CCcccccCCCCCc
Q 036258          125 GNLSKLRSLVLGHKAH---------------------NSLHGHLPSTLSVSLPNLKWLALGMNKLR-TIPNSITNASELT  182 (331)
Q Consensus       125 ~~l~~L~~L~l~~~~~---------------------~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~~~~~~~~l~~L~  182 (331)
                      .++++|++|++++|..                     +.+.+.++..+. .+++|++|++.+|.+. .+|..+..+++|+
T Consensus       185 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  263 (968)
T PLN00113        185 TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIG-GLTSLNHLDLVYNNLTGPIPSSLGNLKNLQ  263 (968)
T ss_pred             hhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHh-cCCCCCEEECcCceeccccChhHhCCCCCC
Confidence            5555555555533322                     122223333332 5555666666555554 4455555566666


Q ss_pred             eeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhcccccc
Q 036258          183 LLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQ  262 (331)
Q Consensus       183 ~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~  262 (331)
                      .|++++|.+.+..|..+..+++|++|++++|.+..       .++..+..+++|++|++++|.+.+..|..+..++ +|+
T Consensus       264 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-------~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~-~L~  335 (968)
T PLN00113        264 YLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG-------EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLP-RLQ  335 (968)
T ss_pred             EEECcCCeeeccCchhHhhccCcCEEECcCCeecc-------CCChhHcCCCCCcEEECCCCccCCcCChhHhcCC-CCC
Confidence            66666666655555556666666666666666554       4566788999999999999999989999888887 999


Q ss_pred             EEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEeccCCeeeecCCccccCC
Q 036258          263 QFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDLCHW  330 (331)
Q Consensus       263 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~  330 (331)
                      .|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+++.+|..+..+
T Consensus       336 ~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~  403 (968)
T PLN00113        336 VLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGAC  403 (968)
T ss_pred             EEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCC
Confidence            99999999999999999999999999999999999999999999999999999999999999876654

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.96  E-value=1.3e-29  Score=220.43  Aligned_cols=278  Identities=22%  Similarity=0.231  Sum_probs=233.9

Q ss_pred             cCCCCCCCcchhcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCcccccc
Q 036258           40 ADPYSVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGR  119 (331)
Q Consensus        40 ~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~  119 (331)
                      .|....++..+|+.-.++++|+|++|.|+ .+..+.|..+..|-+|.|+.|.++...+..|.++++|+.|+|..|++...
T Consensus       158 rN~is~i~~~sfp~~~ni~~L~La~N~It-~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv  236 (873)
T KOG4194|consen  158 RNLISEIPKPSFPAKVNIKKLNLASNRIT-TLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV  236 (873)
T ss_pred             hchhhcccCCCCCCCCCceEEeecccccc-ccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence            37778888889999999999999999998 88888889999999999999999977777888899999999999999854


Q ss_pred             CCccccCcccccccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCc-ccccCCCCCceeeCcCccccccCchh
Q 036258          120 LPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIP-NSITNASELTLLELGKNSFSGLVPNT  198 (331)
Q Consensus       120 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~  198 (331)
                      -.-.|.++++|+.|.+..|.+.    .+.+++|..+.++++|+|..|++..+. ..+.+++.|+.|++++|.|..+.++.
T Consensus       237 e~ltFqgL~Sl~nlklqrN~I~----kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~  312 (873)
T KOG4194|consen  237 EGLTFQGLPSLQNLKLQRNDIS----KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDS  312 (873)
T ss_pred             hhhhhcCchhhhhhhhhhcCcc----cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecch
Confidence            4678899999999999666655    456778889999999999999998665 67889999999999999999998899


Q ss_pred             ccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCccccc---C
Q 036258          199 FGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGS---I  275 (331)
Q Consensus       199 l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~  275 (331)
                      +..+++|+.|+|+.|.++..+++       .+..+..|++|+|+.|.+...-...|..+. +|++|+|.+|.+...   .
T Consensus       313 WsftqkL~~LdLs~N~i~~l~~~-------sf~~L~~Le~LnLs~Nsi~~l~e~af~~ls-sL~~LdLr~N~ls~~IEDa  384 (873)
T KOG4194|consen  313 WSFTQKLKELDLSSNRITRLDEG-------SFRVLSQLEELNLSHNSIDHLAEGAFVGLS-SLHKLDLRSNELSWCIEDA  384 (873)
T ss_pred             hhhcccceeEeccccccccCChh-------HHHHHHHhhhhcccccchHHHHhhHHHHhh-hhhhhcCcCCeEEEEEecc
Confidence            99999999999999999986544       478888999999999998744444555554 999999999988753   3


Q ss_pred             CccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEeccCCeeeecCCccccCC
Q 036258          276 PQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDLCHW  330 (331)
Q Consensus       276 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~  330 (331)
                      ...+.++++|+.|++.+|.+...--.+|.+++.|++|++.+|.+..-=|+.|..+
T Consensus       385 a~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m  439 (873)
T KOG4194|consen  385 AVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM  439 (873)
T ss_pred             hhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc
Confidence            4567889999999999999984434588999999999999999874445565543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.95  E-value=8.3e-29  Score=215.48  Aligned_cols=267  Identities=24%  Similarity=0.258  Sum_probs=213.0

Q ss_pred             CCCcchhcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccc
Q 036258           45 VLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENI  124 (331)
Q Consensus        45 ~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~  124 (331)
                      .+.+..++.++.|+.||||-|.|. .+|..-|..-.+++.|+|++|.|+...-..|..+.+|..|.|++|+++...+..|
T Consensus       139 sv~se~L~~l~alrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~F  217 (873)
T KOG4194|consen  139 SVTSEELSALPALRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSF  217 (873)
T ss_pred             cccHHHHHhHhhhhhhhhhhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHh
Confidence            333345667777888888888877 7777666666788888888888887777788888888888888888886666778


Q ss_pred             cCcccccccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCc-ccccCCCCCceeeCcCccccccCchhccCCC
Q 036258          125 GNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIP-NSITNASELTLLELGKNSFSGLVPNTFGNLR  203 (331)
Q Consensus       125 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~  203 (331)
                      .++++|+.|+|..|++.-..    --.|.+++.|+.|.+..|++..+. ..|..+.++++|++..|++.......+.+++
T Consensus       218 k~L~~L~~LdLnrN~irive----~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt  293 (873)
T KOG4194|consen  218 KRLPKLESLDLNRNRIRIVE----GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLT  293 (873)
T ss_pred             hhcchhhhhhccccceeeeh----hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccc
Confidence            88888888888666554332    223457888888888888887664 6678888999999999988877778888899


Q ss_pred             CCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCC
Q 036258          204 FLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLN  283 (331)
Q Consensus       204 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~  283 (331)
                      .|++|+++.|.|..++       +++...+++|++|+|++|.++...+..+..+. .|+.|.|++|.+....-.+|.+++
T Consensus       294 ~L~~L~lS~NaI~rih-------~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~-~Le~LnLs~Nsi~~l~e~af~~ls  365 (873)
T KOG4194|consen  294 SLEQLDLSYNAIQRIH-------IDSWSFTQKLKELDLSSNRITRLDEGSFRVLS-QLEELNLSHNSIDHLAEGAFVGLS  365 (873)
T ss_pred             hhhhhccchhhhheee-------cchhhhcccceeEeccccccccCChhHHHHHH-HhhhhcccccchHHHHhhHHHHhh
Confidence            9999999999888764       34477888999999999999866666766666 999999999999866677889999


Q ss_pred             CCCEEEccCCCCcccC---CcCccCCCCCCeEeccCCeeeecCCc
Q 036258          284 GLIDLRLQDNDLNGTI---PTTVGRLQQLQGLFLFGNNLQGSIPS  325 (331)
Q Consensus       284 ~L~~L~l~~n~l~~~~---~~~l~~l~~L~~L~l~~n~~~~~~p~  325 (331)
                      +|.+||++.|.++..+   ...|..+++|+.|.+.||++. +||.
T Consensus       366 sL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~k  409 (873)
T KOG4194|consen  366 SLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPK  409 (873)
T ss_pred             hhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee-ecch
Confidence            9999999999987533   345778999999999999998 8885

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.93  E-value=1.3e-27  Score=209.94  Aligned_cols=257  Identities=28%  Similarity=0.397  Sum_probs=193.4

Q ss_pred             hcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccc
Q 036258           51 FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKL  130 (331)
Q Consensus        51 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L  130 (331)
                      +.++..|++||||.|++. +.|..+ ..-+++-+|+|++|+|..+.-..|-++..|-+|||++|++. .+|..+..+.+|
T Consensus        99 iF~l~dLt~lDLShNqL~-EvP~~L-E~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~L  175 (1255)
T KOG0444|consen   99 IFRLKDLTILDLSHNQLR-EVPTNL-EYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSML  175 (1255)
T ss_pred             hcccccceeeecchhhhh-hcchhh-hhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhh
Confidence            557889999999999998 889888 88899999999999998544445668899999999999988 788888889999


Q ss_pred             cccccCccccccccccCCcchhcCCCCCcEEEcCCCCCC--CCcccccCCCCCceeeCcCccccccCchhccCCCCCCEE
Q 036258          131 RSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLR--TIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLL  208 (331)
Q Consensus       131 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L  208 (331)
                      ++|++++|....+--.   .+. .++.|++|.++++.-+  .+|..+..+.+|..++++.|.+. ..|+.+..+++|+.|
T Consensus       176 qtL~Ls~NPL~hfQLr---QLP-smtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrL  250 (1255)
T KOG0444|consen  176 QTLKLSNNPLNHFQLR---QLP-SMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRL  250 (1255)
T ss_pred             hhhhcCCChhhHHHHh---cCc-cchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhhee
Confidence            9999988776654211   111 5566777777777654  67777888888888888888776 567778888888888


Q ss_pred             EccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCccc-ccCCccccCCCCCCE
Q 036258          209 DLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELK-GSIPQEIGNLNGLID  287 (331)
Q Consensus       209 ~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~  287 (331)
                      +|++|.|+.....        .....+|++|+++.|+++ ..|.++.+++ .|+.|++.+|+++ +-+|..++.+.+|+.
T Consensus       251 NLS~N~iteL~~~--------~~~W~~lEtLNlSrNQLt-~LP~avcKL~-kL~kLy~n~NkL~FeGiPSGIGKL~~Lev  320 (1255)
T KOG0444|consen  251 NLSGNKITELNMT--------EGEWENLETLNLSRNQLT-VLPDAVCKLT-KLTKLYANNNKLTFEGIPSGIGKLIQLEV  320 (1255)
T ss_pred             ccCcCceeeeecc--------HHHHhhhhhhccccchhc-cchHHHhhhH-HHHHHHhccCcccccCCccchhhhhhhHH
Confidence            8888888764332        455667778888888876 7777777776 7777777777766 235667777777777


Q ss_pred             EEccCCCCcccCCcCccCCCCCCeEeccCCeeeecCCccc
Q 036258          288 LRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDL  327 (331)
Q Consensus       288 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~  327 (331)
                      +..++|.+. -+|+.++.|+.|+.|.++.|++- .+|+.+
T Consensus       321 f~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaI  358 (1255)
T KOG0444|consen  321 FHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAI  358 (1255)
T ss_pred             HHhhccccc-cCchhhhhhHHHHHhccccccee-echhhh
Confidence            777777776 67777777777777777777765 566544

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.92  E-value=6.2e-27  Score=205.78  Aligned_cols=259  Identities=25%  Similarity=0.433  Sum_probs=151.7

Q ss_pred             CCCccEEEcCCCcCc-cCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccc
Q 036258           54 ISSLKMIRLSSNSLS-GSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRS  132 (331)
Q Consensus        54 ~~~L~~L~l~~~~i~-~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  132 (331)
                      ++-.+-+|+++|.++ +.+|.++ ..|.+++.|.|...++. .+|+.++.+.+|++|.+++|++. .+...+..++.|+.
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v-~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRs   82 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDV-EQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRS   82 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhH-HHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHH
Confidence            455667777777776 4567666 66777777777777665 66777777777777777777766 45556667777777


Q ss_pred             cccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccC
Q 036258          133 LVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGN  212 (331)
Q Consensus       133 L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~  212 (331)
                      +.+..|...+.  .+|..+| .+..|..|++++|+++++|..+..-+++-.|++++|+|..+.-..|-++..|-+|+|++
T Consensus        83 v~~R~N~LKns--GiP~diF-~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~  159 (1255)
T KOG0444|consen   83 VIVRDNNLKNS--GIPTDIF-RLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN  159 (1255)
T ss_pred             HhhhccccccC--CCCchhc-ccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc
Confidence            77765554433  4666666 67777777777777777776666666777777777777655444555566666666666


Q ss_pred             CcccCccCCCccccccccccCCCCcEEEeeccccc-------------------------ccCCchhhhccccccEEEec
Q 036258          213 NYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLS-------------------------GILPPLIGNFSDSLQQFYAY  267 (331)
Q Consensus       213 ~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~-------------------------~~~~~~~~~~~~~L~~L~l~  267 (331)
                      |++..        +|.....+.+|++|.|++|++.                         ..+|..+..+. +|..++++
T Consensus       160 NrLe~--------LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~-NL~dvDlS  230 (1255)
T KOG0444|consen  160 NRLEM--------LPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLH-NLRDVDLS  230 (1255)
T ss_pred             chhhh--------cCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhh-hhhhcccc
Confidence            66653        2333444445555555554432                         12333333333 44444444


Q ss_pred             cCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEeccCCeeeecCCccccCC
Q 036258          268 DCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDLCHW  330 (331)
Q Consensus       268 ~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~  330 (331)
                      .|.+. .+|+.+-.+++|..|++++|.|+ .+.-..+...+|++|+++.|+++ .+|+++|++
T Consensus       231 ~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL  290 (1255)
T KOG0444|consen  231 ENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKL  290 (1255)
T ss_pred             ccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhh
Confidence            44444 44444444445555555555544 33233333444444455555555 555555543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.87  E-value=4.4e-24  Score=178.57  Aligned_cols=255  Identities=29%  Similarity=0.438  Sum_probs=172.2

Q ss_pred             hcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccc
Q 036258           51 FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKL  130 (331)
Q Consensus        51 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L  130 (331)
                      |+.+..|+++.+..|+|. .+|+...+.++++.+|++++|++. ..|+.+..+.+|.+||+++|.++ .+|..++++ .|
T Consensus       224 f~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL  299 (565)
T KOG0472|consen  224 FPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HL  299 (565)
T ss_pred             CCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-ee
Confidence            666666777777666666 667666666777777777777765 66667777777777777777776 566667766 67


Q ss_pred             cccccCcccccccc----------------------------------ccCCcchh---cCCCCCcEEEcCCCCCCCCcc
Q 036258          131 RSLVLGHKAHNSLH----------------------------------GHLPSTLS---VSLPNLKWLALGMNKLRTIPN  173 (331)
Q Consensus       131 ~~L~l~~~~~~~~~----------------------------------~~~~~~~~---~~l~~L~~L~l~~~~l~~~~~  173 (331)
                      +.|.+.+|....+-                                  +..+...|   ......+.|+++.-.++.+|.
T Consensus       300 ~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPd  379 (565)
T KOG0472|consen  300 KFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPD  379 (565)
T ss_pred             eehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCH
Confidence            77666663111000                                  00000000   022334444444444444442


Q ss_pred             cccCCC---CCceeeCcCcccc-----------------------ccCchhccCCCCCCEEEccCCcccCccCCCccccc
Q 036258          174 SITNAS---ELTLLELGKNSFS-----------------------GLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFL  227 (331)
Q Consensus       174 ~~~~l~---~L~~L~l~~n~~~-----------------------~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~  227 (331)
                      ......   -+...+++.|++.                       +..|..++.+++|..|++++|.+...        |
T Consensus       380 EVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~L--------P  451 (565)
T KOG0472|consen  380 EVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDL--------P  451 (565)
T ss_pred             HHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhc--------c
Confidence            221111   1344444444432                       24566778888999999999988854        4


Q ss_pred             cccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCC
Q 036258          228 SSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQ  307 (331)
Q Consensus       228 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~  307 (331)
                      ..+..+..|+.|+++.|.+. ..|..+.... .++.+-.++|++...-+..+.++.+|+.||+.+|.+. .+|..++++.
T Consensus       452 ~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq-~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~Lgnmt  528 (565)
T KOG0472|consen  452 EEMGSLVRLQTLNLSFNRFR-MLPECLYELQ-TLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMT  528 (565)
T ss_pred             hhhhhhhhhheecccccccc-cchHHHhhHH-HHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhcccc
Confidence            44677777999999999887 7888776654 7777777778887555556999999999999999999 9999999999


Q ss_pred             CCCeEeccCCeee
Q 036258          308 QLQGLFLFGNNLQ  320 (331)
Q Consensus       308 ~L~~L~l~~n~~~  320 (331)
                      +|++|.+.||+|.
T Consensus       529 nL~hLeL~gNpfr  541 (565)
T KOG0472|consen  529 NLRHLELDGNPFR  541 (565)
T ss_pred             ceeEEEecCCccC
Confidence            9999999999998

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.84  E-value=1.1e-23  Score=176.30  Aligned_cols=247  Identities=30%  Similarity=0.448  Sum_probs=197.7

Q ss_pred             hcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccc
Q 036258           51 FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKL  130 (331)
Q Consensus        51 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L  130 (331)
                      ..++..+++|.+++|.+. +.|+.+ +.+.+++.++.+.|++. .+|..++.+.+|++++.++|.+. .+++.++.+..+
T Consensus        64 l~nL~~l~vl~~~~n~l~-~lp~ai-g~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l  139 (565)
T KOG0472|consen   64 LKNLACLTVLNVHDNKLS-QLPAAI-GELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDL  139 (565)
T ss_pred             hhcccceeEEEeccchhh-hCCHHH-HHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhh
Confidence            667788888888888887 888877 77888888888888876 77888888888888888888887 677788888888


Q ss_pred             cccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEc
Q 036258          131 RSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDL  210 (331)
Q Consensus       131 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l  210 (331)
                      +.++..+|.+.    .+|.+++ .+.++..+++.+|.+..+|+..-.++.|++++.-.|.+. ..|..++.+.+|+-|++
T Consensus       140 ~dl~~~~N~i~----slp~~~~-~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL  213 (565)
T KOG0472|consen  140 EDLDATNNQIS----SLPEDMV-NLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYL  213 (565)
T ss_pred             hhhhccccccc----cCchHHH-HHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHh
Confidence            88888666665    3444444 677788888888888877766666888888888888776 45666888888888888


Q ss_pred             cCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEc
Q 036258          211 GNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRL  290 (331)
Q Consensus       211 ~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  290 (331)
                      ..|++...+         .|..+..|++|.+..|++. .+|....+..+++..||+.+|+++ +.|+.+.-+.+|..||+
T Consensus       214 ~~Nki~~lP---------ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDl  282 (565)
T KOG0472|consen  214 RRNKIRFLP---------EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDL  282 (565)
T ss_pred             hhcccccCC---------CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcc
Confidence            888887543         3778888888888888886 666666544448888899888888 78888888888889999


Q ss_pred             cCCCCcccCCcCccCCCCCCeEeccCCeee
Q 036258          291 QDNDLNGTIPTTVGRLQQLQGLFLFGNNLQ  320 (331)
Q Consensus       291 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  320 (331)
                      ++|.|+ .+|-.++.+ +|+.|.+.||++.
T Consensus       283 SNN~is-~Lp~sLgnl-hL~~L~leGNPlr  310 (565)
T KOG0472|consen  283 SNNDIS-SLPYSLGNL-HLKFLALEGNPLR  310 (565)
T ss_pred             cCCccc-cCCcccccc-eeeehhhcCCchH
Confidence            999888 778888888 7888888888875

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.82  E-value=1.9e-22  Score=168.47  Aligned_cols=259  Identities=25%  Similarity=0.283  Sum_probs=191.7

Q ss_pred             CccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccC-ccccccCCccccCcccccccc
Q 036258           56 SLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEH-NKFTGRLPENIGNLSKLRSLV  134 (331)
Q Consensus        56 ~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~  134 (331)
                      .-+++.|..|+|+ .||+..|+.+++|++|+|++|.|+.+.|++|.++++|..|.+.+ |+|+......|.++..++.|.
T Consensus        68 ~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl  146 (498)
T KOG4237|consen   68 ETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL  146 (498)
T ss_pred             cceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence            5678889999998 99999999999999999999999989999999999988888777 888865557788999999998


Q ss_pred             cCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcc-cccCCCCCceeeCcCcccc------------ccCchhccC
Q 036258          135 LGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPN-SITNASELTLLELGKNSFS------------GLVPNTFGN  201 (331)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~l~~L~~L~l~~n~~~------------~~~~~~l~~  201 (331)
                      +.-+..+    .+...++..++++..|.+..|.+..++. .+..+..++.+.+..|.+.            ...+.++++
T Consensus       147 lNan~i~----Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsg  222 (498)
T KOG4237|consen  147 LNANHIN----CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSG  222 (498)
T ss_pred             cChhhhc----chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccc
Confidence            8433333    4556677788999999999998887774 7888888888888777621            112223333


Q ss_pred             CCCCCEEEccCCcccCccCCC------------------cc-ccccccccCCCCcEEEeecccccccCCchhhhcccccc
Q 036258          202 LRFLSLLDLGNNYLTTRSSTT------------------EW-SFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQ  262 (331)
Q Consensus       202 ~~~L~~L~l~~~~l~~~~~~~------------------~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~  262 (331)
                      ++-..-..+...++.+.....                  .. .-...|..+++|++|++++|+++.+-+.+|.... .++
T Consensus       223 arc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a-~l~  301 (498)
T KOG4237|consen  223 ARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAA-ELQ  301 (498)
T ss_pred             ceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchh-hhh
Confidence            332222222222222211000                  00 0112367788999999999999877777877776 899


Q ss_pred             EEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEeccCCeee
Q 036258          263 QFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQ  320 (331)
Q Consensus       263 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  320 (331)
                      .|.|..|++...-...|.++.+|+.|++.+|.|+-..|.+|..+.+|.+|++-.|++.
T Consensus       302 eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  302 ELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             hhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence            9999999887555667888888999999999998777788888888999998888764

>PLN03210 Resistant to P

Probab=99.81  E-value=7e-19  Score=175.55  Aligned_cols=106  Identities=26%  Similarity=0.321  Sum_probs=70.7

Q ss_pred             CCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccc
Q 036258           53 NISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRS  132 (331)
Q Consensus        53 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  132 (331)
                      ...+|++|+++++.+. .++.++ ..+++|+.|+++++.....+| .++.+++|++|++++|.....+|..+..+++|+.
T Consensus       609 ~~~~L~~L~L~~s~l~-~L~~~~-~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~  685 (1153)
T PLN03210        609 RPENLVKLQMQGSKLE-KLWDGV-HSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLED  685 (1153)
T ss_pred             CccCCcEEECcCcccc-cccccc-ccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCE
Confidence            4578888888888887 677666 678888888888765444555 3677888888888887554567777788888888


Q ss_pred             cccCccccccccccCCcchhcCCCCCcEEEcCCC
Q 036258          133 LVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMN  166 (331)
Q Consensus       133 L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~  166 (331)
                      |+++++.   ....+|...  .+++|++|++++|
T Consensus       686 L~L~~c~---~L~~Lp~~i--~l~sL~~L~Lsgc  714 (1153)
T PLN03210        686 LDMSRCE---NLEILPTGI--NLKSLYRLNLSGC  714 (1153)
T ss_pred             EeCCCCC---CcCccCCcC--CCCCCCEEeCCCC
Confidence            8885422   122333322  3455555555544

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.81  E-value=1.3e-19  Score=169.48  Aligned_cols=231  Identities=27%  Similarity=0.314  Sum_probs=128.6

Q ss_pred             CccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCccccccccc
Q 036258           56 SLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVL  135 (331)
Q Consensus        56 ~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  135 (331)
                      +|+.|++.+|.++ .+|.    .+++|++|++++|+++ .+|..   .++|+.|++++|.++ .+|..   ..+|+.|++
T Consensus       223 ~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~L  289 (788)
T PRK15387        223 HITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLT-HLPAL---PSGLCKLWI  289 (788)
T ss_pred             CCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccC-cccCc---ccccceeeccCCchh-hhhhc---hhhcCEEEC
Confidence            3455555555544 4442    2345555555555544 22321   234444444444443 22221   123444444


Q ss_pred             CccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcc
Q 036258          136 GHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYL  215 (331)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l  215 (331)
                      ++|....+    +.    ..++|+.|++++|.+..+|...   ..|+.|++++|.+.. +|.   -..+|++|++++|.+
T Consensus       290 s~N~Lt~L----P~----~p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N~L~~-LP~---lp~~Lq~LdLS~N~L  354 (788)
T PRK15387        290 FGNQLTSL----PV----LPPGLQELSVSDNQLASLPALP---SELCKLWAYNNQLTS-LPT---LPSGLQELSVSDNQL  354 (788)
T ss_pred             cCCccccc----cc----cccccceeECCCCccccCCCCc---ccccccccccCcccc-ccc---cccccceEecCCCcc
Confidence            44333322    11    2355666666666666554322   234444555555442 121   113566666666666


Q ss_pred             cCccCCCc------------cccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCC
Q 036258          216 TTRSSTTE------------WSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLN  283 (331)
Q Consensus       216 ~~~~~~~~------------~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~  283 (331)
                      +.++....            ..++.   ...+|+.|++++|.+. .+|..    ++.|+.|++++|.+. .+|..+   .
T Consensus       355 s~LP~lp~~L~~L~Ls~N~L~~LP~---l~~~L~~LdLs~N~Lt-~LP~l----~s~L~~LdLS~N~Ls-sIP~l~---~  422 (788)
T PRK15387        355 ASLPTLPSELYKLWAYNNRLTSLPA---LPSGLKELIVSGNRLT-SLPVL----PSELKELMVSGNRLT-SLPMLP---S  422 (788)
T ss_pred             CCCCCCCcccceehhhccccccCcc---cccccceEEecCCccc-CCCCc----ccCCCEEEccCCcCC-CCCcch---h
Confidence            65432100            00111   1246788888888877 44543    237888888888887 466533   4


Q ss_pred             CCCEEEccCCCCcccCCcCccCCCCCCeEeccCCeeeecCCccc
Q 036258          284 GLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDL  327 (331)
Q Consensus       284 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~  327 (331)
                      +|+.|++++|.++ .+|..+..+++|+.|++++|++++..|+.+
T Consensus       423 ~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        423 GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             hhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence            6778999999998 789889999999999999999998887765

>PLN03210 Resistant to P

Probab=99.80  E-value=2e-18  Score=172.35  Aligned_cols=160  Identities=22%  Similarity=0.312  Sum_probs=105.3

Q ss_pred             CCcchhcCCCCccEEEcCCCc------CccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCcccccc
Q 036258           46 LTKNCFYNISSLKMIRLSSNS------LSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGR  119 (331)
Q Consensus        46 ~~~~~~~~~~~L~~L~l~~~~------i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~  119 (331)
                      +...+|.+|++|+.|.+..+.      +...+|.++..-.++|+.|.+.++.+. .+|..| ...+|++|++.++.+. .
T Consensus       549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~  625 (1153)
T PLN03210        549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-K  625 (1153)
T ss_pred             ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-c
Confidence            344579999999999886543      222456655333356888888887765 566665 4678888888888776 5


Q ss_pred             CCccccCcccccccccCccccccccccCCcchhcCCCCCcEEEcCCCC-CCCCcccccCCCCCceeeCcCccccccCchh
Q 036258          120 LPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNK-LRTIPNSITNASELTLLELGKNSFSGLVPNT  198 (331)
Q Consensus       120 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~  198 (331)
                      ++..+..+++|+.|+++++.   ....++. . ..+++|++|++.+|. +..+|..+..+++|+.|++++|.....+|..
T Consensus       626 L~~~~~~l~~Lk~L~Ls~~~---~l~~ip~-l-s~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~  700 (1153)
T PLN03210        626 LWDGVHSLTGLRNIDLRGSK---NLKEIPD-L-SMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG  700 (1153)
T ss_pred             cccccccCCCCCEEECCCCC---CcCcCCc-c-ccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc
Confidence            67777778888888885432   1223332 2 256788888887664 4567777777788888888776544444443


Q ss_pred             ccCCCCCCEEEccCCc
Q 036258          199 FGNLRFLSLLDLGNNY  214 (331)
Q Consensus       199 l~~~~~L~~L~l~~~~  214 (331)
                      + .+++|++|++++|.
T Consensus       701 i-~l~sL~~L~Lsgc~  715 (1153)
T PLN03210        701 I-NLKSLYRLNLSGCS  715 (1153)
T ss_pred             C-CCCCCCEEeCCCCC
Confidence            3 46666667666663

syringae 6; Provisional

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.79  E-value=4.4e-21  Score=166.92  Aligned_cols=265  Identities=23%  Similarity=0.310  Sum_probs=185.6

Q ss_pred             hhcCCCCccEEEcCCCcCcc----CCChhhhcCCCCCcEEEccCCcccc------cCCccCcCCCCCCEEEccCcccccc
Q 036258           50 CFYNISSLKMIRLSSNSLSG----SLPNDLCNRLPSLEQLVLRSNGFFG------QIPLSLSKCTQLQHLWLEHNKFTGR  119 (331)
Q Consensus        50 ~~~~~~~L~~L~l~~~~i~~----~~~~~~~~~~~~L~~L~L~~n~i~~------~~~~~~~~l~~L~~L~l~~n~~~~~  119 (331)
                      .|..+..|++|+++++.+++    .++..+ ...+.++.++++++.+.+      ..+..+..+++|++|++++|.+...
T Consensus        18 ~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l-~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~   96 (319)
T cd00116          18 LLPKLLCLQVLRLEGNTLGEEAAKALASAL-RPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD   96 (319)
T ss_pred             HHHHHhhccEEeecCCCCcHHHHHHHHHHH-hhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChh
Confidence            45666779999999998853    233333 567889999999887651      2334567788999999999988755


Q ss_pred             CCccccCccc---ccccccCcccccccccc-CCcchhcCC-CCCcEEEcCCCCCC-----CCcccccCCCCCceeeCcCc
Q 036258          120 LPENIGNLSK---LRSLVLGHKAHNSLHGH-LPSTLSVSL-PNLKWLALGMNKLR-----TIPNSITNASELTLLELGKN  189 (331)
Q Consensus       120 ~~~~~~~l~~---L~~L~l~~~~~~~~~~~-~~~~~~~~l-~~L~~L~l~~~~l~-----~~~~~~~~l~~L~~L~l~~n  189 (331)
                      .+..+..+..   |++|+++++........ +...+ ..+ ++|++|++.+|.++     .++..+..+++|++|++++|
T Consensus        97 ~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l-~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n  175 (319)
T cd00116          97 GCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGL-KDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANN  175 (319)
T ss_pred             HHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHH-HhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCC
Confidence            5555555554   99999976655421111 11222 255 88999999999887     23455677788999999999


Q ss_pred             ccccc----CchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhc----cccc
Q 036258          190 SFSGL----VPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNF----SDSL  261 (331)
Q Consensus       190 ~~~~~----~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~----~~~L  261 (331)
                      .+.+.    .+..+...++|++|++++|.+......   .+...+..+++|++|++++|.+.+.....+...    .+.|
T Consensus       176 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~---~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L  252 (319)
T cd00116         176 GIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGAS---ALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISL  252 (319)
T ss_pred             CCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHH---HHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCc
Confidence            88742    233455667999999999987653221   344557778999999999998876444443332    1489


Q ss_pred             cEEEeccCcccc----cCCccccCCCCCCEEEccCCCCccc----CCcCccCC-CCCCeEeccCCee
Q 036258          262 QQFYAYDCELKG----SIPQEIGNLNGLIDLRLQDNDLNGT----IPTTVGRL-QQLQGLFLFGNNL  319 (331)
Q Consensus       262 ~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l-~~L~~L~l~~n~~  319 (331)
                      ++|++++|.+++    .+...+..+++|+.+++++|.+...    ....+... +.|+++++.+|++
T Consensus       253 ~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         253 LTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             eEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            999999998862    3345566678899999999999853    34444445 6789999988864

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.79  E-value=3.5e-19  Score=167.52  Aligned_cols=225  Identities=29%  Similarity=0.435  Sum_probs=131.5

Q ss_pred             CccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCccccccccc
Q 036258           56 SLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVL  135 (331)
Q Consensus        56 ~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  135 (331)
                      +++.|++++|.++ .+|..+   .++|++|++++|.++ .+|..+.  ++|+.|++++|.+. .+|..+.  .+|+.|++
T Consensus       200 ~L~~L~Ls~N~Lt-sLP~~l---~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~L  269 (754)
T PRK15370        200 QITTLILDNNELK-SLPENL---QGNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDL  269 (754)
T ss_pred             CCcEEEecCCCCC-cCChhh---ccCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEEC
Confidence            4666666666666 566554   246666666666665 3444332  35666666666665 4454432  35666666


Q ss_pred             CccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcc
Q 036258          136 GHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYL  215 (331)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l  215 (331)
                      ++|....+    |..+   .++|+.|++++|.++.+|..+.  ..|+.|++++|.+... |..+  .++|+.|++++|.+
T Consensus       270 s~N~L~~L----P~~l---~~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~L-P~~l--~~sL~~L~Ls~N~L  337 (754)
T PRK15370        270 FHNKISCL----PENL---PEELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTAL-PETL--PPGLKTLEAGENAL  337 (754)
T ss_pred             cCCccCcc----cccc---CCCCcEEECCCCccccCcccch--hhHHHHHhcCCccccC-Cccc--cccceeccccCCcc
Confidence            55544432    2222   1356666776666666554332  3566666666666532 3222  24677777777766


Q ss_pred             cCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCC
Q 036258          216 TTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDL  295 (331)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l  295 (331)
                      +.++.        .+  .++|+.|++++|++. .+|..+   +++|+.|++++|.++ .+|..+.  ..|+.|++++|.+
T Consensus       338 t~LP~--------~l--~~sL~~L~Ls~N~L~-~LP~~l---p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L  400 (754)
T PRK15370        338 TSLPA--------SL--PPELQVLDVSKNQIT-VLPETL---PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNL  400 (754)
T ss_pred             ccCCh--------hh--cCcccEEECCCCCCC-cCChhh---cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCc
Confidence            65322        12  256777777777776 455443   237777777777776 4555443  2567777777777


Q ss_pred             cccCCcCccC----CCCCCeEeccCCeee
Q 036258          296 NGTIPTTVGR----LQQLQGLFLFGNNLQ  320 (331)
Q Consensus       296 ~~~~~~~l~~----l~~L~~L~l~~n~~~  320 (331)
                      . .+|+.+..    ++.+..+++.+|+++
T Consensus       401 ~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        401 V-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             c-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            7 55554433    466777888887764

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.78  E-value=4.9e-19  Score=166.53  Aligned_cols=230  Identities=25%  Similarity=0.376  Sum_probs=181.3

Q ss_pred             CCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccc
Q 036258           55 SSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLV  134 (331)
Q Consensus        55 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  134 (331)
                      .+.+.|++++++++ .+|..+   .+.|+.|++++|.++ .+|..+.  .+|++|++++|.++ .+|..+.  .+|+.|+
T Consensus       178 ~~~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~  247 (754)
T PRK15370        178 NNKTELRLKILGLT-TIPACI---PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEME  247 (754)
T ss_pred             cCceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEE
Confidence            35789999999998 888766   468999999999998 5665553  58999999999998 5676553  4799999


Q ss_pred             cCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCc
Q 036258          135 LGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNY  214 (331)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~  214 (331)
                      +++|....+    |..+.   .+|+.|++++|++..+|..+.  ++|+.|++++|.+... |..+.  ++|++|++++|.
T Consensus       248 Ls~N~L~~L----P~~l~---s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~L-P~~lp--~sL~~L~Ls~N~  315 (754)
T PRK15370        248 LSINRITEL----PERLP---SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTL-PAHLP--SGITHLNVQSNS  315 (754)
T ss_pred             CcCCccCcC----ChhHh---CCCCEEECcCCccCccccccC--CCCcEEECCCCccccC-cccch--hhHHHHHhcCCc
Confidence            987776544    44332   479999999999998887653  5899999999998853 43332  479999999999


Q ss_pred             ccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCC
Q 036258          215 LTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDND  294 (331)
Q Consensus       215 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~  294 (331)
                      +..++..        +  .++|+.|++++|.++ .+|..+.   ++|+.|++++|++. .+|..+.  ++|+.|++++|.
T Consensus       316 Lt~LP~~--------l--~~sL~~L~Ls~N~Lt-~LP~~l~---~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~  378 (754)
T PRK15370        316 LTALPET--------L--PPGLKTLEAGENALT-SLPASLP---PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNA  378 (754)
T ss_pred             cccCCcc--------c--cccceeccccCCccc-cCChhhc---CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCc
Confidence            8864321        2  267999999999998 4665543   49999999999998 5776553  689999999999


Q ss_pred             CcccCCcCccCCCCCCeEeccCCeeeecCCccc
Q 036258          295 LNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDL  327 (331)
Q Consensus       295 l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~  327 (331)
                      ++ .+|..+.  +.|+.|++++|+++ .+|..+
T Consensus       379 Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl  407 (754)
T PRK15370        379 LT-NLPENLP--AALQIMQASRNNLV-RLPESL  407 (754)
T ss_pred             CC-CCCHhHH--HHHHHHhhccCCcc-cCchhH
Confidence            99 6777654  37999999999998 888654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.78  E-value=3.3e-18  Score=160.24  Aligned_cols=228  Identities=25%  Similarity=0.306  Sum_probs=158.2

Q ss_pred             CCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccc
Q 036258           55 SSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLV  134 (331)
Q Consensus        55 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  134 (331)
                      ..-..|+++++.++ .+|..+   .++|+.|++.+|+++ .+|.   ..++|++|++++|+++ .+|..   .++|+.|+
T Consensus       201 ~~~~~LdLs~~~Lt-sLP~~l---~~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~  268 (788)
T PRK15387        201 NGNAVLNVGESGLT-TLPDCL---PAHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELS  268 (788)
T ss_pred             CCCcEEEcCCCCCC-cCCcch---hcCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc---ccccceee
Confidence            45678999999998 899877   358999999999987 4564   3589999999999998 45643   46899999


Q ss_pred             cCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCc
Q 036258          135 LGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNY  214 (331)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~  214 (331)
                      +.+|....+.    .    ...+|+.|++.+|+++.+|..   .++|+.|++++|.+... |..   ...|+.|++++|.
T Consensus       269 Ls~N~L~~Lp----~----lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~L-p~l---p~~L~~L~Ls~N~  333 (788)
T PRK15387        269 IFSNPLTHLP----A----LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASL-PAL---PSELCKLWAYNNQ  333 (788)
T ss_pred             ccCCchhhhh----h----chhhcCEEECcCCcccccccc---ccccceeECCCCccccC-CCC---cccccccccccCc
Confidence            9777665433    2    235789999999999988753   47899999999998854 332   2468889999999


Q ss_pred             ccCccCCCccccccccccCCCCcEEEeecccccccCCchhh----------------hccccccEEEeccCcccccCCcc
Q 036258          215 LTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIG----------------NFSDSLQQFYAYDCELKGSIPQE  278 (331)
Q Consensus       215 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~----------------~~~~~L~~L~l~~~~~~~~~~~~  278 (331)
                      +..++.           ...+|+.|++++|++. .+|....                ..+.+|+.|++++|.+. .+|..
T Consensus       334 L~~LP~-----------lp~~Lq~LdLS~N~Ls-~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt-~LP~l  400 (788)
T PRK15387        334 LTSLPT-----------LPSGLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-SLPVL  400 (788)
T ss_pred             cccccc-----------cccccceEecCCCccC-CCCCCCcccceehhhccccccCcccccccceEEecCCccc-CCCCc
Confidence            886432           1136778888888776 3332110                01124555556555555 34432


Q ss_pred             ccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEeccCCeeeecCCccccCC
Q 036258          279 IGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDLCHW  330 (331)
Q Consensus       279 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~  330 (331)
                         .++|+.|++++|.++ .+|..   ..+|+.|++++|+++ .+|+.++++
T Consensus       401 ---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L  444 (788)
T PRK15387        401 ---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHL  444 (788)
T ss_pred             ---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhc
Confidence               235666677766666 45542   235677777788877 778776654

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.77  E-value=1.3e-20  Score=157.62  Aligned_cols=261  Identities=21%  Similarity=0.260  Sum_probs=199.2

Q ss_pred             cEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccccCc
Q 036258           58 KMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGH  137 (331)
Q Consensus        58 ~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~  137 (331)
                      ..++.++-+++ ++|.++   .+.-..+.|..|+|+.+.+.+|+.+++|++|||++|.|+.+.|.+|.++..+..|.+.+
T Consensus        49 ~~VdCr~~GL~-eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg  124 (498)
T KOG4237|consen   49 GIVDCRGKGLT-EVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYG  124 (498)
T ss_pred             ceEEccCCCcc-cCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhc
Confidence            45777787888 899866   67788899999999988889999999999999999999999999999999999988865


Q ss_pred             -cccccccccCCcchhcCCCCCcEEEcCCCCCCCCc-ccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcc
Q 036258          138 -KAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIP-NSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYL  215 (331)
Q Consensus       138 -~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l  215 (331)
                       |.+.    +++..+|.++..++-|.+.-|.+..++ ..|..++++..|.+.+|.+..+....|..+..++.++++.|..
T Consensus       125 ~NkI~----~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~  200 (498)
T KOG4237|consen  125 NNKIT----DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPF  200 (498)
T ss_pred             CCchh----hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcc
Confidence             5554    677888889999999999999888554 8899999999999999999876666889999999999998873


Q ss_pred             cCccC-----CCccccccccccCCC----------------------CcEE--Eeec-ccccccCCc-hhhhccccccEE
Q 036258          216 TTRSS-----TTEWSFLSSLTNCIY----------------------LKVL--GLHS-NQLSGILPP-LIGNFSDSLQQF  264 (331)
Q Consensus       216 ~~~~~-----~~~~~~~~~~~~~~~----------------------L~~L--~l~~-n~~~~~~~~-~~~~~~~~L~~L  264 (331)
                      -.-..     +..-..+..++....                      ++.+  .+.. +...++-|. .|..++ +|++|
T Consensus       201 icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~-~L~~l  279 (498)
T KOG4237|consen  201 ICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLP-NLRKL  279 (498)
T ss_pred             ccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcc-cceEe
Confidence            22100     000000111111111                      1111  1111 112223343 444555 99999


Q ss_pred             EeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEeccCCeeeecCCccc
Q 036258          265 YAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDL  327 (331)
Q Consensus       265 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~  327 (331)
                      +|++|++++.-+.+|.+...+++|.+.+|++...-...|.++..|+.|++.+|+|+-.-|-.|
T Consensus       280 nlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF  342 (498)
T KOG4237|consen  280 NLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAF  342 (498)
T ss_pred             ccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccc
Confidence            999999998889999999999999999999986555678899999999999999995444343

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.74  E-value=3.9e-20  Score=137.99  Aligned_cols=164  Identities=30%  Similarity=0.526  Sum_probs=133.2

Q ss_pred             CCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccC
Q 036258          154 SLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNC  233 (331)
Q Consensus       154 ~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~  233 (331)
                      .+.++..|.+++|+++.+|+.+..+.+|+.|++.+|++. ..|..++.++.|+.|+++.|++..        .|..|..+
T Consensus        31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~~--------lprgfgs~  101 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNI--------LPRGFGSF  101 (264)
T ss_pred             chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhhc--------CccccCCC
Confidence            566777778888888888888888888888888888887 557778888888888888887773        56668888


Q ss_pred             CCCcEEEeecccccc-cCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeE
Q 036258          234 IYLKVLGLHSNQLSG-ILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGL  312 (331)
Q Consensus       234 ~~L~~L~l~~n~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  312 (331)
                      |.|+.|++++|++.. ..|-.|+.+. .++.|++++|.+- .+|..++.+.+|+.|.+.+|.+. .+|..++.+.+|++|
T Consensus       102 p~levldltynnl~e~~lpgnff~m~-tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrel  178 (264)
T KOG0617|consen  102 PALEVLDLTYNNLNENSLPGNFFYMT-TLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLREL  178 (264)
T ss_pred             chhhhhhccccccccccCCcchhHHH-HHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHH
Confidence            888888888887753 3455555554 8888888888886 78888899999999999999988 888889999999999


Q ss_pred             eccCCeeeecCCccccCC
Q 036258          313 FLFGNNLQGSIPSDLCHW  330 (331)
Q Consensus       313 ~l~~n~~~~~~p~~~~~~  330 (331)
                      ++++|+++ .+|+.+.++
T Consensus       179 hiqgnrl~-vlppel~~l  195 (264)
T KOG0617|consen  179 HIQGNRLT-VLPPELANL  195 (264)
T ss_pred             hcccceee-ecChhhhhh
Confidence            99999998 888877654

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.74  E-value=1.2e-19  Score=158.03  Aligned_cols=258  Identities=22%  Similarity=0.248  Sum_probs=182.3

Q ss_pred             EEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccc----cCCccCcCCCCCCEEEccCccccc------cCCccccCcc
Q 036258           59 MIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFG----QIPLSLSKCTQLQHLWLEHNKFTG------RLPENIGNLS  128 (331)
Q Consensus        59 ~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~l~~n~~~~------~~~~~~~~l~  128 (331)
                      .|+|..+.+++.--..+|..+.+|+.|+++++.++.    .++..+...+++++++++++.+..      .++..+..++
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            467777777643334555778889999999998742    244556677889999999987762      2334567788


Q ss_pred             cccccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCC-----CcccccCC-CCCceeeCcCccccc----cCchh
Q 036258          129 KLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRT-----IPNSITNA-SELTLLELGKNSFSG----LVPNT  198 (331)
Q Consensus       129 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-----~~~~~~~l-~~L~~L~l~~n~~~~----~~~~~  198 (331)
                      +|++|+++++............+... ++|++|++++|.+..     +...+..+ ++|++|++++|.+.+    .....
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~  160 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA  160 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence            99999997666543221111222223 569999999998862     23455666 899999999999873    23445


Q ss_pred             ccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCch----hhhccccccEEEeccCccccc
Q 036258          199 FGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPL----IGNFSDSLQQFYAYDCELKGS  274 (331)
Q Consensus       199 l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~  274 (331)
                      +..+++|++|++++|.+......   .+...+...++|++|++++|.+.+.....    +... ++|++|++++|.+.+.
T Consensus       161 ~~~~~~L~~L~l~~n~l~~~~~~---~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~-~~L~~L~ls~n~l~~~  236 (319)
T cd00116         161 LRANRDLKELNLANNGIGDAGIR---ALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASL-KSLEVLNLGDNNLTDA  236 (319)
T ss_pred             HHhCCCcCEEECcCCCCchHHHH---HHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhccc-CCCCEEecCCCcCchH
Confidence            67778999999999988742111   23344566689999999999987443333    3333 3899999999998853


Q ss_pred             CCcccc-----CCCCCCEEEccCCCCcc----cCCcCccCCCCCCeEeccCCeeee
Q 036258          275 IPQEIG-----NLNGLIDLRLQDNDLNG----TIPTTVGRLQQLQGLFLFGNNLQG  321 (331)
Q Consensus       275 ~~~~l~-----~l~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~~~~  321 (331)
                      ....+.     ..+.|++|++++|.++.    .+...+..+++|+++++++|.++.
T Consensus       237 ~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~  292 (319)
T cd00116         237 GAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGE  292 (319)
T ss_pred             HHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence            222222     24789999999999972    334556677899999999999984

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.72  E-value=1.4e-19  Score=166.01  Aligned_cols=242  Identities=27%  Similarity=0.365  Sum_probs=161.6

Q ss_pred             CCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccc
Q 036258           55 SSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLV  134 (331)
Q Consensus        55 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  134 (331)
                      ++++.|+.+.|.+....+.   ....+|++++++.+.++ .+|+.++.+.+|+.+...+|.++ .+|..+..+.+|+.|.
T Consensus       219 ~~l~~L~a~~n~l~~~~~~---p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~  293 (1081)
T KOG0618|consen  219 PSLTALYADHNPLTTLDVH---PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLS  293 (1081)
T ss_pred             cchheeeeccCcceeeccc---cccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHH
Confidence            5667777777766522222   23567888888888776 55677777888888888888776 6676666777777777


Q ss_pred             cCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcccccC--------------------------CCCCceeeCcC
Q 036258          135 LGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITN--------------------------ASELTLLELGK  188 (331)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~--------------------------l~~L~~L~l~~  188 (331)
                      ..+|...++    +.... .+..|++|++..|.+..+|..+..                          ...|+.|.+.+
T Consensus       294 ~~~nel~yi----p~~le-~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lylan  368 (1081)
T KOG0618|consen  294 AAYNELEYI----PPFLE-GLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLAN  368 (1081)
T ss_pred             hhhhhhhhC----CCccc-ccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhc
Confidence            755544433    33222 466777777777777655532211                          12355566666


Q ss_pred             ccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEecc
Q 036258          189 NSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYD  268 (331)
Q Consensus       189 n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~  268 (331)
                      |.+.+..-..+.+..+|+.|+|++|++..++..       .+.++..|++|++++|.++ .+|..+..+. .|+.|...+
T Consensus       369 N~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas-------~~~kle~LeeL~LSGNkL~-~Lp~tva~~~-~L~tL~ahs  439 (1081)
T KOG0618|consen  369 NHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPAS-------KLRKLEELEELNLSGNKLT-TLPDTVANLG-RLHTLRAHS  439 (1081)
T ss_pred             CcccccchhhhccccceeeeeecccccccCCHH-------HHhchHHhHHHhcccchhh-hhhHHHHhhh-hhHHHhhcC
Confidence            666654444566777788888888877765433       2667777788888888876 6667666666 777777777


Q ss_pred             CcccccCCccccCCCCCCEEEccCCCCcc-cCCcCccCCCCCCeEeccCCe
Q 036258          269 CELKGSIPQEIGNLNGLIDLRLQDNDLNG-TIPTTVGRLQQLQGLFLFGNN  318 (331)
Q Consensus       269 ~~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~  318 (331)
                      |.+. .+| .+..+++|+.+|++-|.++. .++... ..|+|++||++||.
T Consensus       440 N~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~-p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  440 NQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEAL-PSPNLKYLDLSGNT  487 (1081)
T ss_pred             Ccee-ech-hhhhcCcceEEecccchhhhhhhhhhC-CCcccceeeccCCc
Confidence            7776 667 67888888888888888875 333333 33788888888887

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.70  E-value=1.8e-19  Score=134.48  Aligned_cols=161  Identities=29%  Similarity=0.452  Sum_probs=131.6

Q ss_pred             hcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccc
Q 036258           51 FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKL  130 (331)
Q Consensus        51 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L  130 (331)
                      +.++.+++.|.+|+|.++ .+|+.+ ..+.+|+.|++.+|+|+ .+|..++.+++|+.|++..|++. ..|.+|+.++.|
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppni-a~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l  104 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNI-AELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL  104 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcH-HHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchh
Confidence            456778899999999998 888888 78999999999999997 78889999999999999999988 899999999999


Q ss_pred             cccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEc
Q 036258          131 RSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDL  210 (331)
Q Consensus       131 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l  210 (331)
                      +.|++.+|..+.-  .+|...| .+..|+.|.++.|.+..+|..++++++|+.|.+.+|.+. ..|..++.+..|+.|++
T Consensus       105 evldltynnl~e~--~lpgnff-~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhi  180 (264)
T KOG0617|consen  105 EVLDLTYNNLNEN--SLPGNFF-YMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHI  180 (264)
T ss_pred             hhhhccccccccc--cCCcchh-HHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhc
Confidence            9999965554432  3444444 677788888888888888888888888888888888776 45777777778888888


Q ss_pred             cCCcccCcc
Q 036258          211 GNNYLTTRS  219 (331)
Q Consensus       211 ~~~~l~~~~  219 (331)
                      .+|+++..+
T Consensus       181 qgnrl~vlp  189 (264)
T KOG0617|consen  181 QGNRLTVLP  189 (264)
T ss_pred             ccceeeecC
Confidence            888777644

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.69  E-value=5.1e-19  Score=162.27  Aligned_cols=247  Identities=30%  Similarity=0.361  Sum_probs=196.6

Q ss_pred             hcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccc
Q 036258           51 FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKL  130 (331)
Q Consensus        51 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L  130 (331)
                      ...+.+|+.|....|++. .+.    ..-++|+.|+...|.+....+  -.--.+|+++++++|.++ .+|+.+..+.+|
T Consensus       195 ls~~~~l~~l~c~rn~ls-~l~----~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~-~lp~wi~~~~nl  266 (1081)
T KOG0618|consen  195 LSNLANLEVLHCERNQLS-ELE----ISGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLS-NLPEWIGACANL  266 (1081)
T ss_pred             hhhccchhhhhhhhcccc-eEE----ecCcchheeeeccCcceeecc--ccccccceeeecchhhhh-cchHHHHhcccc
Confidence            456677777777777765 433    346889999999998873332  233468999999999998 678889999999


Q ss_pred             cccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccC---------
Q 036258          131 RSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGN---------  201 (331)
Q Consensus       131 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~---------  201 (331)
                      +.+...+|...    .++..++ ..++|+.+...+|.+..+|.....++.|++|++..|.+....+..+..         
T Consensus       267 e~l~~n~N~l~----~lp~ri~-~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln  341 (1081)
T KOG0618|consen  267 EALNANHNRLV----ALPLRIS-RITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLN  341 (1081)
T ss_pred             eEecccchhHH----hhHHHHh-hhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHh
Confidence            99999766663    5666666 789999999999999999999999999999999999886432221111         


Q ss_pred             ----------------CCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEE
Q 036258          202 ----------------LRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFY  265 (331)
Q Consensus       202 ----------------~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~  265 (331)
                                      ...|+.|.+++|.++.       .....+.++++|+.|+|++|++.......+.++. .|+.|+
T Consensus       342 ~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd-------~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle-~LeeL~  413 (1081)
T KOG0618|consen  342 VSSNKLSTLPSYEENNHAALQELYLANNHLTD-------SCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLE-ELEELN  413 (1081)
T ss_pred             hhhccccccccccchhhHHHHHHHHhcCcccc-------cchhhhccccceeeeeecccccccCCHHHHhchH-HhHHHh
Confidence                            1235666666776665       4555688899999999999999844445666665 999999


Q ss_pred             eccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEeccCCeeee
Q 036258          266 AYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQG  321 (331)
Q Consensus       266 l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~  321 (331)
                      |++|+++ .+|+.+..++.|+.|...+|.+. ..| .+..++.|+.+|++.|+++.
T Consensus       414 LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~  466 (1081)
T KOG0618|consen  414 LSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSE  466 (1081)
T ss_pred             cccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhh
Confidence            9999998 78999999999999999999998 788 68899999999999999874

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.37  E-value=1.8e-14  Score=119.37  Aligned_cols=249  Identities=22%  Similarity=0.288  Sum_probs=151.1

Q ss_pred             cCCCCccEEEcCCCcCccC----CChhhhcCCCCCcEEEccCCc---ccccCC-------ccCcCCCCCCEEEccCcccc
Q 036258           52 YNISSLKMIRLSSNSLSGS----LPNDLCNRLPSLEQLVLRSNG---FFGQIP-------LSLSKCTQLQHLWLEHNKFT  117 (331)
Q Consensus        52 ~~~~~L~~L~l~~~~i~~~----~~~~~~~~~~~L~~L~L~~n~---i~~~~~-------~~~~~l~~L~~L~l~~n~~~  117 (331)
                      ..+..++.+++++|.+...    +...+ ...++|+..++++--   ....+|       +++..+++|++++||.|.+.
T Consensus        27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L-~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G  105 (382)
T KOG1909|consen   27 EPMDSLTKLDLSGNTFGTEAARAIAKVL-ASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG  105 (382)
T ss_pred             cccCceEEEeccCCchhHHHHHHHHHHH-hhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence            4557799999999987522    22223 567788888887631   112233       23455678888888888776


Q ss_pred             ccCCccc----cCcccccccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccc
Q 036258          118 GRLPENI----GNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSG  193 (331)
Q Consensus       118 ~~~~~~~----~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~  193 (331)
                      ...+..|    .....|++|+|.+++.....+.....   .+..|   .        .......-++|+.+..++|++..
T Consensus       106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~---al~~l---~--------~~kk~~~~~~Lrv~i~~rNrlen  171 (382)
T KOG1909|consen  106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR---ALFEL---A--------VNKKAASKPKLRVFICGRNRLEN  171 (382)
T ss_pred             ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH---HHHHH---H--------HHhccCCCcceEEEEeecccccc
Confidence            4333332    34566777777666555544332111   00000   0        11223344677777777777653


Q ss_pred             c----CchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccccCC----chhhhccccccEEE
Q 036258          194 L----VPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILP----PLIGNFSDSLQQFY  265 (331)
Q Consensus       194 ~----~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~----~~~~~~~~~L~~L~  265 (331)
                      .    ....|...+.|+.+.+..|.|..-+..   .+...+..+++|+.|+|.+|-++..-.    ..+..++ .|+.|+
T Consensus       172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~---al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~-~L~El~  247 (382)
T KOG1909|consen  172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVT---ALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWP-HLRELN  247 (382)
T ss_pred             ccHHHHHHHHHhccccceEEEecccccCchhH---HHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccc-hheeec
Confidence            2    234566667788888888877654332   345567788888888888887764322    3334444 788888


Q ss_pred             eccCcccccCCccc-----cCCCCCCEEEccCCCCccc----CCcCccCCCCCCeEeccCCee
Q 036258          266 AYDCELKGSIPQEI-----GNLNGLIDLRLQDNDLNGT----IPTTVGRLQQLQGLFLFGNNL  319 (331)
Q Consensus       266 l~~~~~~~~~~~~l-----~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~  319 (331)
                      +++|.+.......+     ...|+|+.|.+.+|.++..    +...+...|.|+.|++++|.+
T Consensus       248 l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  248 LGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             ccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            88888775544433     3367788888888887642    222344567788888888887

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.27  E-value=2.1e-13  Score=113.08  Aligned_cols=195  Identities=24%  Similarity=0.358  Sum_probs=128.4

Q ss_pred             hhcCCCCccEEEcCCCc---CccCCChhh------hcCCCCCcEEEccCCcccccCCcc----CcCCCCCCEEEccCccc
Q 036258           50 CFYNISSLKMIRLSSNS---LSGSLPNDL------CNRLPSLEQLVLRSNGFFGQIPLS----LSKCTQLQHLWLEHNKF  116 (331)
Q Consensus        50 ~~~~~~~L~~L~l~~~~---i~~~~~~~~------~~~~~~L~~L~L~~n~i~~~~~~~----~~~l~~L~~L~l~~n~~  116 (331)
                      ++.+.+.|++.++++-.   ....+|..+      ..++|+|++|+|++|-+....+..    +.++..|++|.|.+|.+
T Consensus        53 ~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Gl  132 (382)
T KOG1909|consen   53 VLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGL  132 (382)
T ss_pred             HHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCC
Confidence            57778899999998742   222445432      246889999999999774333323    36689999999999987


Q ss_pred             cccCC-------------ccccCcccccccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCC-----CcccccCC
Q 036258          117 TGRLP-------------ENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRT-----IPNSITNA  178 (331)
Q Consensus       117 ~~~~~-------------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-----~~~~~~~l  178 (331)
                      ...-.             ...+.-++|+.+...+|+..+.+......++...+.|+.+.+..|++..     +...+..+
T Consensus       133 g~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~  212 (382)
T KOG1909|consen  133 GPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHC  212 (382)
T ss_pred             ChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhC
Confidence            62111             1233456788888877777666655556666677788888888877751     23556777


Q ss_pred             CCCceeeCcCccccc----cCchhccCCCCCCEEEccCCcccCccCCCccccccccc-cCCCCcEEEeeccccc
Q 036258          179 SELTLLELGKNSFSG----LVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLT-NCIYLKVLGLHSNQLS  247 (331)
Q Consensus       179 ~~L~~L~l~~n~~~~----~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~  247 (331)
                      ++|+.|++.+|.++.    .+...++.|++|+.++++.|.+..-+..   .+...+. ..|.|+.+.+.+|.++
T Consensus       213 ~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~---a~~~al~~~~p~L~vl~l~gNeIt  283 (382)
T KOG1909|consen  213 PHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAI---AFVDALKESAPSLEVLELAGNEIT  283 (382)
T ss_pred             CcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHH---HHHHHHhccCCCCceeccCcchhH
Confidence            888888888887653    2345666777788888877777653222   2222222 3466777777777665

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.26  E-value=6.7e-12  Score=97.43  Aligned_cols=128  Identities=26%  Similarity=0.286  Sum_probs=47.8

Q ss_pred             ccCCCCCceeeCcCccccccCchhcc-CCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCch
Q 036258          175 ITNASELTLLELGKNSFSGLVPNTFG-NLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPL  253 (331)
Q Consensus       175 ~~~l~~L~~L~l~~n~~~~~~~~~l~-~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~  253 (331)
                      +.+..++++|++.+|.|..+  +.++ .+.+|+.|++++|.++.+.         .+..+++|++|++++|.+. .+...
T Consensus        15 ~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l~---------~l~~L~~L~~L~L~~N~I~-~i~~~   82 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKLE---------GLPGLPRLKTLDLSNNRIS-SISEG   82 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S--T---------T----TT--EEE--SS----S-CHH
T ss_pred             cccccccccccccccccccc--cchhhhhcCCCEEECCCCCCcccc---------CccChhhhhhcccCCCCCC-ccccc
Confidence            34455778888888888754  3454 4677888888888887642         3666788888888888887 44444


Q ss_pred             hhhccccccEEEeccCccccc-CCccccCCCCCCEEEccCCCCcccCCc----CccCCCCCCeEecc
Q 036258          254 IGNFSDSLQQFYAYDCELKGS-IPQEIGNLNGLIDLRLQDNDLNGTIPT----TVGRLQQLQGLFLF  315 (331)
Q Consensus       254 ~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~----~l~~l~~L~~L~l~  315 (331)
                      +....++|+.|++++|++... ....+..+++|+.|++.+|+++. .+.    .+..+|+|+.||-.
T Consensus        83 l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~-~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   83 LDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE-KKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             HHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG-STTHHHHHHHH-TT-SEETTE
T ss_pred             hHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc-hhhHHHHHHHHcChhheeCCE
Confidence            433223888888888888742 23467788999999999999884 332    34568889888754

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.22  E-value=1.3e-12  Score=111.52  Aligned_cols=136  Identities=24%  Similarity=0.217  Sum_probs=62.4

Q ss_pred             CCCCCcEEEcCCCCCC--CCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccc
Q 036258          154 SLPNLKWLALGMNKLR--TIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLT  231 (331)
Q Consensus       154 ~l~~L~~L~l~~~~l~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~  231 (331)
                      .++.|+.|.++.|+++  .+......+++|+.|++.+|............++.|+.|+|++|.+...+      ......
T Consensus       195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~------~~~~~~  268 (505)
T KOG3207|consen  195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFD------QGYKVG  268 (505)
T ss_pred             hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccc------cccccc
Confidence            3455566666666555  22233444556666666555322222222333445566666665544321      112344


Q ss_pred             cCCCCcEEEeecccccccCC-ch-----hhhccccccEEEeccCcccc-cCCccccCCCCCCEEEccCCCCc
Q 036258          232 NCIYLKVLGLHSNQLSGILP-PL-----IGNFSDSLQQFYAYDCELKG-SIPQEIGNLNGLIDLRLQDNDLN  296 (331)
Q Consensus       232 ~~~~L~~L~l~~n~~~~~~~-~~-----~~~~~~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~n~l~  296 (331)
                      .++.|+.|+++.+.+.+.-- +.     ...++ +++.|++..|++.+ .....+..+++|+.|.+..|.+.
T Consensus       269 ~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~-kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  269 TLPGLNQLNLSSTGIASIAEPDVESLDKTHTFP-KLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             cccchhhhhccccCcchhcCCCccchhhhcccc-cceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            55555555555555442211 11     11222 55556665555531 11223344455555555555554

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.21  E-value=5.3e-13  Score=117.35  Aligned_cols=194  Identities=25%  Similarity=0.397  Sum_probs=113.6

Q ss_pred             CCCCCEEEccCccccccCCccccCcccccccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCc
Q 036258          103 CTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELT  182 (331)
Q Consensus       103 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~  182 (331)
                      +..-...|++.|++. .+|..+..+..|+.+.+.+|.+..+    +..+. .+..|..++++.|.+..+|..+..+ -|+
T Consensus        74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r~i----p~~i~-~L~~lt~l~ls~NqlS~lp~~lC~l-pLk  146 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIRTI----PEAIC-NLEALTFLDLSSNQLSHLPDGLCDL-PLK  146 (722)
T ss_pred             ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccceec----chhhh-hhhHHHHhhhccchhhcCChhhhcC-cce
Confidence            344456677777777 6677776667777776655554432    22222 4555666666666666666554433 456


Q ss_pred             eeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhcccccc
Q 036258          183 LLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQ  262 (331)
Q Consensus       183 ~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~  262 (331)
                      .|-+++|++. ..|+.++..+.|..|+.+.|.+..        ++..+..+..|+.|.+..|.+. .+|..+..+  .|.
T Consensus       147 vli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~s--------lpsql~~l~slr~l~vrRn~l~-~lp~El~~L--pLi  214 (722)
T KOG0532|consen  147 VLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQS--------LPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL--PLI  214 (722)
T ss_pred             eEEEecCccc-cCCcccccchhHHHhhhhhhhhhh--------chHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC--cee
Confidence            6666666665 345555566666666666666654        3444566666666666666665 445555544  466


Q ss_pred             EEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCc---cCCCCCCeEeccCC
Q 036258          263 QFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTV---GRLQQLQGLFLFGN  317 (331)
Q Consensus       263 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l---~~l~~L~~L~l~~n  317 (331)
                      .||++.|++. .+|-.|.+|..|+.|.|.+|++. .-|-.+   ++.+-.++|+.+-|
T Consensus       215 ~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  215 RLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             eeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence            6666666665 56666666666666666666666 333322   22334555555555

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.19  E-value=1.6e-12  Score=106.07  Aligned_cols=179  Identities=24%  Similarity=0.308  Sum_probs=106.4

Q ss_pred             cCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccc---cCC--------------------ccCcCCCCCCE
Q 036258           52 YNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFG---QIP--------------------LSLSKCTQLQH  108 (331)
Q Consensus        52 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~---~~~--------------------~~~~~l~~L~~  108 (331)
                      .-+++|+.+.++.|.-. .|..-. ..=|.|+++.+++..+..   ..|                    ..+..++.|++
T Consensus       211 ~~f~~l~~~~~s~~~~~-~i~~~~-~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~Lte  288 (490)
T KOG1259|consen  211 NAFRNLKTLKFSALSTE-NIVDIE-LLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTE  288 (490)
T ss_pred             HHhhhhheeeeeccchh-heecee-ecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhhh
Confidence            34456666666666533 332211 234566666666554321   111                    11223456777


Q ss_pred             EEccCccccccCCccccCcccccccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcC
Q 036258          109 LWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGK  188 (331)
Q Consensus       109 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~  188 (331)
                      +||++|.++ .+.+++.-.|+++.|++++|++..+..     + ..+++|++|++++|.++.+...-.++-+++.|.+++
T Consensus       289 lDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~n-----L-a~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~  361 (490)
T KOG1259|consen  289 LDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQN-----L-AELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ  361 (490)
T ss_pred             ccccccchh-hhhhhhhhccceeEEeccccceeeehh-----h-hhcccceEeecccchhHhhhhhHhhhcCEeeeehhh
Confidence            777777776 566666667777777776666553321     1 256777777777777766555555666777777777


Q ss_pred             ccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeeccccc
Q 036258          189 NSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLS  247 (331)
Q Consensus       189 n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~  247 (331)
                      |.+...  ..++.+-+|.+|++.+|+|...      +....+.++|.|+++.+.+|++.
T Consensus       362 N~iE~L--SGL~KLYSLvnLDl~~N~Ie~l------deV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  362 NKIETL--SGLRKLYSLVNLDLSSNQIEEL------DEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             hhHhhh--hhhHhhhhheeccccccchhhH------HHhcccccccHHHHHhhcCCCcc
Confidence            766532  2345566677777777777665      33345667777777777777765

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.18  E-value=3.3e-11  Score=108.02  Aligned_cols=195  Identities=32%  Similarity=0.419  Sum_probs=134.7

Q ss_pred             EEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCC-CCCEEEccCccccccCCccccCcccccccccCc
Q 036258           59 MIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCT-QLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGH  137 (331)
Q Consensus        59 ~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~  137 (331)
                      .++.+.+.+...+. .+ ...+.++.|++.++.+. .++....... +|+.|++++|.+. .+|..+..+++|+.|++++
T Consensus        97 ~l~~~~~~~~~~~~-~~-~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~  172 (394)
T COG4886          97 SLDLNLNRLRSNIS-EL-LELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF  172 (394)
T ss_pred             eeeccccccccCch-hh-hcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCC
Confidence            57777776632222 22 34577888888888887 4454555563 8888888888887 5666777888888888876


Q ss_pred             cccccccccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcccC
Q 036258          138 KAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTT  217 (331)
Q Consensus       138 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~  217 (331)
                      |....+.    .... ..++|+.+++++|.+..+|........|+++.+++|.+. ..+..+..+.++..+.+..|.+..
T Consensus       173 N~l~~l~----~~~~-~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~  246 (394)
T COG4886         173 NDLSDLP----KLLS-NLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED  246 (394)
T ss_pred             chhhhhh----hhhh-hhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee
Confidence            6665443    2222 567888888888888888876656667888888888533 234556677777777777777664


Q ss_pred             ccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCccccc
Q 036258          218 RSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGS  274 (331)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  274 (331)
                              .+..+..++.+++|++++|.+.....  +.... +++.|+++++.+...
T Consensus       247 --------~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~-~l~~L~~s~n~~~~~  292 (394)
T COG4886         247 --------LPESIGNLSNLETLDLSNNQISSISS--LGSLT-NLRELDLSGNSLSNA  292 (394)
T ss_pred             --------ccchhccccccceecccccccccccc--ccccC-ccCEEeccCcccccc
Confidence                    24446777778888888888873333  44444 888888888877643

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.18  E-value=2.9e-11  Score=108.36  Aligned_cols=150  Identities=33%  Similarity=0.480  Sum_probs=70.7

Q ss_pred             CCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCC
Q 036258          157 NLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYL  236 (331)
Q Consensus       157 ~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L  236 (331)
                      +|+++++.+|.+..++..+..++.|+.|++++|++... +......+.|+.|++++|.+..++.        .......|
T Consensus       141 nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l-~~~~~~~~~L~~L~ls~N~i~~l~~--------~~~~~~~L  211 (394)
T COG4886         141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDL-PKLLSNLSNLNNLDLSGNKISDLPP--------EIELLSAL  211 (394)
T ss_pred             hcccccccccchhhhhhhhhccccccccccCCchhhhh-hhhhhhhhhhhheeccCCccccCch--------hhhhhhhh
Confidence            45555555555554444445555555555555555422 2222234455555555555553321        11223335


Q ss_pred             cEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEeccC
Q 036258          237 KVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFG  316 (331)
Q Consensus       237 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~  316 (331)
                      +++.+++|.+. ..+..+.... .+..+.+.+|++. .++..+..++.++.|++++|.++ .++. ++.+.+++.|++++
T Consensus       212 ~~l~~~~N~~~-~~~~~~~~~~-~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~  286 (394)
T COG4886         212 EELDLSNNSII-ELLSSLSNLK-NLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSG  286 (394)
T ss_pred             hhhhhcCCcce-ecchhhhhcc-cccccccCCceee-eccchhccccccceecccccccc-cccc-ccccCccCEEeccC
Confidence            55555555322 2333333333 4444444444444 22444555555555555555555 3332 45555555566655


Q ss_pred             Ceee
Q 036258          317 NNLQ  320 (331)
Q Consensus       317 n~~~  320 (331)
                      |.++
T Consensus       287 n~~~  290 (394)
T COG4886         287 NSLS  290 (394)
T ss_pred             cccc
Confidence            5555

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.17  E-value=3.7e-12  Score=108.73  Aligned_cols=208  Identities=21%  Similarity=0.193  Sum_probs=132.9

Q ss_pred             cCCCCCCEEEccCccccccCC--ccccCcccccccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCc--cccc
Q 036258          101 SKCTQLQHLWLEHNKFTGRLP--ENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIP--NSIT  176 (331)
Q Consensus       101 ~~l~~L~~L~l~~n~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~--~~~~  176 (331)
                      .++.+|+++.|+++.+. ..+  .....+++++.|++++|-+..+..  ...+...+|+|+.|+++.|++....  ..-.
T Consensus       118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~--v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~  194 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFP--VLKIAEQLPSLENLNLSSNRLSNFISSNTTL  194 (505)
T ss_pred             hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHH--HHHHHHhcccchhcccccccccCCccccchh
Confidence            46778888888888776 222  355678888888887766655421  1233447888888888888876322  2223


Q ss_pred             CCCCCceeeCcCccccc-cCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccccCC-chh
Q 036258          177 NASELTLLELGKNSFSG-LVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILP-PLI  254 (331)
Q Consensus       177 ~l~~L~~L~l~~n~~~~-~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~  254 (331)
                      .++.|+.|.+++|.++- ........+|+|+.|++..|....+       ......-+..|++|+|++|++.+... ...
T Consensus       195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~-------~~~~~~i~~~L~~LdLs~N~li~~~~~~~~  267 (505)
T KOG3207|consen  195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILI-------KATSTKILQTLQELDLSNNNLIDFDQGYKV  267 (505)
T ss_pred             hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccce-------ecchhhhhhHHhhccccCCccccccccccc
Confidence            45778888888887752 2223345678888888888742211       11224455668888888888763322 233


Q ss_pred             hhccccccEEEeccCccccc-CCcc-----ccCCCCCCEEEccCCCCcccCC--cCccCCCCCCeEeccCCeee
Q 036258          255 GNFSDSLQQFYAYDCELKGS-IPQE-----IGNLNGLIDLRLQDNDLNGTIP--TTVGRLQQLQGLFLFGNNLQ  320 (331)
Q Consensus       255 ~~~~~~L~~L~l~~~~~~~~-~~~~-----l~~l~~L~~L~l~~n~l~~~~~--~~l~~l~~L~~L~l~~n~~~  320 (331)
                      ..++ .|..|+++.|.+.+. +|++     ...+++|+.|++..|++. +.+  ..+..+++|+.|.+.+|.++
T Consensus       268 ~~l~-~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  268 GTLP-GLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             cccc-chhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhhhccccccc
Confidence            4444 788888888887753 3443     355678888888888885 222  23455677788888777765

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.14  E-value=1.6e-12  Score=114.38  Aligned_cols=196  Identities=26%  Similarity=0.422  Sum_probs=139.8

Q ss_pred             CCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccc
Q 036258           53 NISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRS  132 (331)
Q Consensus        53 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  132 (331)
                      .+.--...|++.|.+. .+|..+ ..+..|+.+.++.|.+. .+|..+.++..|.+++|+.|+++ .+|..++.++ |+.
T Consensus        73 ~ltdt~~aDlsrNR~~-elp~~~-~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkv  147 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFS-ELPEEA-CAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKV  147 (722)
T ss_pred             cccchhhhhccccccc-cCchHH-HHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-cee
Confidence            3444566788888877 777766 45677888888887775 67778888888888888888887 6777766654 677


Q ss_pred             cccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccC
Q 036258          133 LVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGN  212 (331)
Q Consensus       133 L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~  212 (331)
                      |.+++|...    .++..+. ..+.|..|+.++|.+..+|..+..+.+|+.|.+..|++... |..+..++ |..||++.
T Consensus       148 li~sNNkl~----~lp~~ig-~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~l-p~El~~Lp-Li~lDfSc  220 (722)
T KOG0532|consen  148 LIVSNNKLT----SLPEEIG-LLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDL-PEELCSLP-LIRLDFSC  220 (722)
T ss_pred             EEEecCccc----cCCcccc-cchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhC-CHHHhCCc-eeeeeccc
Confidence            777666655    3444454 66778888888888888888888888888888888887744 44555554 88888888


Q ss_pred             CcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhcc--ccccEEEeccC
Q 036258          213 NYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFS--DSLQQFYAYDC  269 (331)
Q Consensus       213 ~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~--~~L~~L~l~~~  269 (331)
                      |++..        +|..|..+..|++|.|.+|.+. ..|-.+....  --.++|+...|
T Consensus       221 Nkis~--------iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  221 NKISY--------LPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             Cceee--------cchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence            88885        4555888888888888888886 4443332111  14566666666

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.14  E-value=2.7e-11  Score=94.11  Aligned_cols=106  Identities=29%  Similarity=0.387  Sum_probs=22.1

Q ss_pred             CCCCcEEEccCCcccccCCccCc-CCCCCCEEEccCccccccCCccccCcccccccccCccccccccccCCcchhcCCCC
Q 036258           79 LPSLEQLVLRSNGFFGQIPLSLS-KCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPN  157 (331)
Q Consensus        79 ~~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~  157 (331)
                      ..+++.|+|.+|.|+.+  +.++ .+.+|+.|++++|.++. + +.+..++.|+.|++++|.+..+.    ..+...+|+
T Consensus        18 ~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~i~----~~l~~~lp~   89 (175)
T PF14580_consen   18 PVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISSIS----EGLDKNLPN   89 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-C----HHHHHH-TT
T ss_pred             ccccccccccccccccc--cchhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCccc----cchHHhCCc
Confidence            33445555555544422  1232 34455555555555441 1 12333334444444333333221    111113445


Q ss_pred             CcEEEcCCCCCCCCc--ccccCCCCCceeeCcCcccc
Q 036258          158 LKWLALGMNKLRTIP--NSITNASELTLLELGKNSFS  192 (331)
Q Consensus       158 L~~L~l~~~~l~~~~--~~~~~l~~L~~L~l~~n~~~  192 (331)
                      |++|++++|++..+.  ..+..+++|+.|++.+|.+.
T Consensus        90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            555555555544322  23444555555555555554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.13  E-value=1.1e-11  Score=101.18  Aligned_cols=128  Identities=27%  Similarity=0.281  Sum_probs=66.0

Q ss_pred             CCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCC
Q 036258          156 PNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIY  235 (331)
Q Consensus       156 ~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~  235 (331)
                      +.|+++++++|.++.+.+...-.++++.|+++.|.+...  +.+..+++|+.|++++|.+..+.        .+-..+-+
T Consensus       284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~--------Gwh~KLGN  353 (490)
T KOG1259|consen  284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECV--------GWHLKLGN  353 (490)
T ss_pred             hhhhhccccccchhhhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhh--------hhHhhhcC
Confidence            345566666666665555555556666666666665433  23555556666666666555432        22334455


Q ss_pred             CcEEEeecccccccCCchhhhccccccEEEeccCcccc-cCCccccCCCCCCEEEccCCCCc
Q 036258          236 LKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKG-SIPQEIGNLNGLIDLRLQDNDLN  296 (331)
Q Consensus       236 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~n~l~  296 (331)
                      +++|.+++|.+.  ....+.++. +|..|++.+|+|.. .-...++++|-|+.+.+.+|++.
T Consensus       354 IKtL~La~N~iE--~LSGL~KLY-SLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  354 IKTLKLAQNKIE--TLSGLRKLY-SLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             EeeeehhhhhHh--hhhhhHhhh-hheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence            556666655553  122333333 55555555555542 11234455555555555555554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.11  E-value=2.4e-11  Score=116.91  Aligned_cols=109  Identities=27%  Similarity=0.373  Sum_probs=83.0

Q ss_pred             CCCCccEEEcCCCc--CccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccc
Q 036258           53 NISSLKMIRLSSNS--LSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKL  130 (331)
Q Consensus        53 ~~~~L~~L~l~~~~--i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L  130 (331)
                      ..+.|+.|-+.++.  +. .++..+|..+|.|++|+|++|.-.+.+|..++.+-+||+|+++++.++ .+|..+.++..|
T Consensus       543 ~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L  620 (889)
T KOG4658|consen  543 ENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKL  620 (889)
T ss_pred             CCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhh
Confidence            44578888887775  54 778888888999999999987655688888889999999999998888 788888889999


Q ss_pred             cccccCccccccccccCCcchhcCCCCCcEEEcCCCC
Q 036258          131 RSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNK  167 (331)
Q Consensus       131 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  167 (331)
                      .+|++..+..-..   + ......+++|++|.+....
T Consensus       621 ~~Lnl~~~~~l~~---~-~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  621 IYLNLEVTGRLES---I-PGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             heecccccccccc---c-cchhhhcccccEEEeeccc
Confidence            9998854433221   2 3444368888988886654

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.06  E-value=1.4e-10  Score=74.31  Aligned_cols=61  Identities=33%  Similarity=0.469  Sum_probs=52.5

Q ss_pred             CCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccc
Q 036258           55 SSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKF  116 (331)
Q Consensus        55 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~  116 (331)
                      ++|++|++++|.+. .+|...|..+++|++|++++|.+....+..|.++++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            56888999999888 88888888899999999999988877778888999999999988864

...

>PLN03150 hypothetical protein; Provisional

Probab=99.05  E-value=1e-09  Score=103.27  Aligned_cols=141  Identities=31%  Similarity=0.442  Sum_probs=93.9

Q ss_pred             cCChhhHHHHHHHHHhccCCCC--CCC--------cc----hh-cC---CCCccEEEcCCCcCccCCChhhhcCCCCCcE
Q 036258           23 KNITTDQSALLAFKAHIADPYS--VLT--------KN----CF-YN---ISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQ   84 (331)
Q Consensus        23 ~~~~~~~~~l~~~~~~~~~~~~--~~~--------~~----~~-~~---~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~   84 (331)
                      ...+.+..++..+|..+.++..  ...        .|    |- ..   ...++.|+|+++.+.+.+|..+ ..+++|+.
T Consensus       368 ~t~~~~~~aL~~~k~~~~~~~~~~W~g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i-~~L~~L~~  446 (623)
T PLN03150        368 KTLLEEVSALQTLKSSLGLPLRFGWNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDI-SKLRHLQS  446 (623)
T ss_pred             ccCchHHHHHHHHHHhcCCcccCCCCCCCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHH-hCCCCCCE
Confidence            4456677888888876654321  000        11    21 11   1136778888888887777766 67888888


Q ss_pred             EEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccccCccccccccccCCcchhcCCCCCcEEEcC
Q 036258           85 LVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALG  164 (331)
Q Consensus        85 L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~  164 (331)
                      |+|++|.+.+.+|..++.+++|+.|++++|.+++.+|..+..+++|++|++++|   .+.+.+|..+.....++..+++.
T Consensus       447 L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N---~l~g~iP~~l~~~~~~~~~l~~~  523 (623)
T PLN03150        447 INLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN---SLSGRVPAALGGRLLHRASFNFT  523 (623)
T ss_pred             EECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCC---cccccCChHHhhccccCceEEec
Confidence            888888888788888888888888888888888788888888888888888443   34455555544333344555555


Q ss_pred             CCC
Q 036258          165 MNK  167 (331)
Q Consensus       165 ~~~  167 (331)
                      +|.
T Consensus       524 ~N~  526 (623)
T PLN03150        524 DNA  526 (623)
T ss_pred             CCc
Confidence            543

>PLN03150 hypothetical protein; Provisional

Probab=99.02  E-value=3.1e-10  Score=106.78  Aligned_cols=91  Identities=35%  Similarity=0.619  Sum_probs=54.3

Q ss_pred             CcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEecc
Q 036258          236 LKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLF  315 (331)
Q Consensus       236 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  315 (331)
                      ++.|+|++|.+.+.+|..+..+. .|+.|+|++|.+.+.+|..+..+++|+.|++++|.+.+.+|+.+..+++|+.|+++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~-~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLR-HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCC-CCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            45556666666555555555554 56666666666655556556666666666666666665556556666666666666


Q ss_pred             CCeeeecCCccc
Q 036258          316 GNNLQGSIPSDL  327 (331)
Q Consensus       316 ~n~~~~~~p~~~  327 (331)
                      +|.++|.+|+.+
T Consensus       499 ~N~l~g~iP~~l  510 (623)
T PLN03150        499 GNSLSGRVPAAL  510 (623)
T ss_pred             CCcccccCChHH
Confidence            666666666544

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.02  E-value=2.3e-10  Score=110.21  Aligned_cols=267  Identities=21%  Similarity=0.225  Sum_probs=146.6

Q ss_pred             hhcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCccc
Q 036258           50 CFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSK  129 (331)
Q Consensus        50 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~  129 (331)
                      .|..++.|++||+++|.-.+.+|..+ +.+-+|++|+++++.+. .+|.+++++..|.+|++..+.-...++.....+++
T Consensus       566 ff~~m~~LrVLDLs~~~~l~~LP~~I-~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~  643 (889)
T KOG4658|consen  566 FFRSLPLLRVLDLSGNSSLSKLPSSI-GELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQS  643 (889)
T ss_pred             HHhhCcceEEEECCCCCccCcCChHH-hhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhccc
Confidence            47778888888888775444778777 77888888888888876 77888888888888888877654455666666888


Q ss_pred             ccccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCc----eeeCcCccccccCchhccCCCCC
Q 036258          130 LRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELT----LLELGKNSFSGLVPNTFGNLRFL  205 (331)
Q Consensus       130 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~----~L~l~~n~~~~~~~~~l~~~~~L  205 (331)
                      |++|.+..-. ..........+ ..+.+|+.+....... .+-..+..++.|.    .+.+.++... ..+..+..+.+|
T Consensus       644 Lr~L~l~~s~-~~~~~~~l~el-~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L  719 (889)
T KOG4658|consen  644 LRVLRLPRSA-LSNDKLLLKEL-ENLEHLENLSITISSV-LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNL  719 (889)
T ss_pred             ccEEEeeccc-cccchhhHHhh-hcccchhhheeecchh-HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCc
Confidence            8888774322 11111111112 1334444444432222 1111222223332    2222222211 233456667778


Q ss_pred             CEEEccCCcccCccCCCccccccccc-cCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCC
Q 036258          206 SLLDLGNNYLTTRSSTTEWSFLSSLT-NCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNG  284 (331)
Q Consensus       206 ~~L~l~~~~l~~~~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~  284 (331)
                      +.|.+..+.+..+....  ....... .++++..+.+.++... ..+.+. .++++|+.|.+..|.....+.+....+..
T Consensus       720 ~~L~i~~~~~~e~~~~~--~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~-~f~~~L~~l~l~~~~~~e~~i~~~k~~~~  795 (889)
T KOG4658|consen  720 EELSILDCGISEIVIEW--EESLIVLLCFPNLSKVSILNCHML-RDLTWL-LFAPHLTSLSLVSCRLLEDIIPKLKALLE  795 (889)
T ss_pred             ceEEEEcCCCchhhccc--ccccchhhhHHHHHHHHhhccccc-cccchh-hccCcccEEEEecccccccCCCHHHHhhh
Confidence            88888887765432110  0000011 1333434433333322 111221 34459999999999887766666666666


Q ss_pred             CCEEEccCCCCccc-CCcCccC----------CCCCCeEeccCCeeeecCCcc
Q 036258          285 LIDLRLQDNDLNGT-IPTTVGR----------LQQLQGLFLFGNNLQGSIPSD  326 (331)
Q Consensus       285 L~~L~l~~n~l~~~-~~~~l~~----------l~~L~~L~l~~n~~~~~~p~~  326 (331)
                      ++++.+..+.+.+. .-...+.          .+.|+.+.+..|+-.+++|..
T Consensus       796 l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~  848 (889)
T KOG4658|consen  796 LKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLL  848 (889)
T ss_pred             cccEEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCccc
Confidence            76665655555432 1111111          234677777777766677753

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.95  E-value=8.4e-10  Score=70.63  Aligned_cols=60  Identities=30%  Similarity=0.377  Sum_probs=50.3

Q ss_pred             cccEEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEeccCCee
Q 036258          260 SLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNL  319 (331)
Q Consensus       260 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~  319 (331)
                      +|++|++++|++....+.++.++++|++|++++|.+++..+++|.++++|++|++++|++
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            678888888888866667888889999999999998876677888899999999988875

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.91  E-value=1e-10  Score=95.50  Aligned_cols=203  Identities=19%  Similarity=0.134  Sum_probs=120.2

Q ss_pred             CCCCCCEEEccCcccc--ccCCccccCcccccccccCccccccccccCCcchhcCCCCCcEEEcCCCCCC--CCcccccC
Q 036258          102 KCTQLQHLWLEHNKFT--GRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLR--TIPNSITN  177 (331)
Q Consensus       102 ~l~~L~~L~l~~n~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~--~~~~~~~~  177 (331)
                      ....++.+||.+|.++  ..+...+.++|.|+.|+++.|+.+.-.+..|.    ...+|++|-+.++.+.  .....+..
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~----p~~nl~~lVLNgT~L~w~~~~s~l~~  144 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPL----PLKNLRVLVLNGTGLSWTQSTSSLDD  144 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcc----cccceEEEEEcCCCCChhhhhhhhhc
Confidence            3455666666666554  12223345666666666666555554444442    4567777777777665  34456667


Q ss_pred             CCCCceeeCcCccccc--cCchhccCC-CCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchh
Q 036258          178 ASELTLLELGKNSFSG--LVPNTFGNL-RFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLI  254 (331)
Q Consensus       178 l~~L~~L~l~~n~~~~--~~~~~l~~~-~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~  254 (331)
                      ++.+++|+++.|..-.  ...+....+ +.+.+++...|....|..     ......-+|++..+.+..+++.+.....-
T Consensus       145 lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~-----~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~  219 (418)
T KOG2982|consen  145 LPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLN-----KNKLSRIFPNVNSVFVCEGPLKTESSEKG  219 (418)
T ss_pred             chhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHH-----HHhHHhhcccchheeeecCcccchhhccc
Confidence            7777788777773321  111112222 356667777775544321     22234556788888888887765544432


Q ss_pred             hhccccccEEEeccCccccc-CCccccCCCCCCEEEccCCCCcccCCc------CccCCCCCCeEe
Q 036258          255 GNFSDSLQQFYAYDCELKGS-IPQEIGNLNGLIDLRLQDNDLNGTIPT------TVGRLQQLQGLF  313 (331)
Q Consensus       255 ~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~------~l~~l~~L~~L~  313 (331)
                      +.-.+.+..|+|+.+++.+. -.+.+.++++|..|.++++++.+.+..      .++.+++++.|+
T Consensus       220 se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN  285 (418)
T KOG2982|consen  220 SEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN  285 (418)
T ss_pred             CCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence            22223677788888887643 245788899999999999998754432      245566666654

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.87  E-value=2.1e-10  Score=103.20  Aligned_cols=128  Identities=34%  Similarity=0.398  Sum_probs=59.4

Q ss_pred             CCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCccccccc
Q 036258           54 ISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSL  133 (331)
Q Consensus        54 ~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  133 (331)
                      +..++.+.+..+.+. .+-..+ ..+.+|..|++.+|.|..+. ..+..+++|++|++++|.++..  ..+..++.|+.|
T Consensus        71 l~~l~~l~l~~n~i~-~~~~~l-~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L  145 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIA-KILNHL-SKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKEL  145 (414)
T ss_pred             hHhHHhhccchhhhh-hhhccc-ccccceeeeeccccchhhcc-cchhhhhcchheeccccccccc--cchhhccchhhh
Confidence            344444445555444 211112 34555555555555554221 1144555555555555555422  223344445555


Q ss_pred             ccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCccc-ccCCCCCceeeCcCcccc
Q 036258          134 VLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNS-ITNASELTLLELGKNSFS  192 (331)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~-~~~l~~L~~L~l~~n~~~  192 (331)
                      ++.+|.+..+.+.      ..+++|+.+++++|.+..+... ...+.+++.+.+++|.+.
T Consensus       146 ~l~~N~i~~~~~~------~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  146 NLSGNLISDISGL------ESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIR  199 (414)
T ss_pred             eeccCcchhccCC------ccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchh
Confidence            5555444433221      0245555555555555543322 344555555555555544

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.80  E-value=4.2e-10  Score=101.21  Aligned_cols=219  Identities=28%  Similarity=0.281  Sum_probs=140.6

Q ss_pred             CCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccc
Q 036258           55 SSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLV  134 (331)
Q Consensus        55 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  134 (331)
                      +.++.++...+.+. ..... ...+..++.+.++.|.+.. .-..+..+.+|..+++..|.+.. +...+..+++|++|+
T Consensus        49 ~~~~~~~~~~~~~~-~~~~~-~~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~  124 (414)
T KOG0531|consen   49 SDLEEIDLIFNLDG-SDEDL-VESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLD  124 (414)
T ss_pred             chhhhhcchhcccc-chhhh-HHHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchhee
Confidence            34455555554433 11111 1357788888898888764 33457888999999999999873 333367789999999


Q ss_pred             cCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCc-hhccCCCCCCEEEccCC
Q 036258          135 LGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVP-NTFGNLRFLSLLDLGNN  213 (331)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~L~l~~~  213 (331)
                      +++|.+..+.+-      ..++.|+.|++.+|.++.+. .+..++.|+.+++++|.+....+ . ...+..++.+.+.+|
T Consensus       125 ls~N~I~~i~~l------~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n  196 (414)
T KOG0531|consen  125 LSFNKITKLEGL------STLTLLKELNLSGNLISDIS-GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGN  196 (414)
T ss_pred             ccccccccccch------hhccchhhheeccCcchhcc-CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCC
Confidence            988888766432      15677999999999998664 45558999999999999986544 2 467788999999999


Q ss_pred             cccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCC
Q 036258          214 YLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDN  293 (331)
Q Consensus       214 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n  293 (331)
                      .+..+..         +.....+..+++.+|.+...-+-...... .++.+++.+|++. ..+..+..+..+..|++.+|
T Consensus       197 ~i~~i~~---------~~~~~~l~~~~l~~n~i~~~~~l~~~~~~-~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n  265 (414)
T KOG0531|consen  197 SIREIEG---------LDLLKKLVLLSLLDNKISKLEGLNELVML-HLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSN  265 (414)
T ss_pred             chhcccc---------hHHHHHHHHhhcccccceeccCcccchhH-HHHHHhcccCccc-cccccccccccccccchhhc
Confidence            8876532         23333344445555555422221110000 1566666666665 23344555555566666555


Q ss_pred             CCc
Q 036258          294 DLN  296 (331)
Q Consensus       294 ~l~  296 (331)
                      .+.
T Consensus       266 ~~~  268 (414)
T KOG0531|consen  266 RIS  268 (414)
T ss_pred             ccc
Confidence            543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.56  E-value=2.2e-10  Score=103.93  Aligned_cols=134  Identities=22%  Similarity=0.261  Sum_probs=60.0

Q ss_pred             cCCCCCcEEEccCCccccc-CCccCcCCCCCCEEEccCccccccCCccccCc-ccccccccCcccc-------ccccccC
Q 036258           77 NRLPSLEQLVLRSNGFFGQ-IPLSLSKCTQLQHLWLEHNKFTGRLPENIGNL-SKLRSLVLGHKAH-------NSLHGHL  147 (331)
Q Consensus        77 ~~~~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~l~~~~~-------~~~~~~~  147 (331)
                      .-+++++.|.+-.-.-.+. .|-.+..+..|++|.++++.+..  ..++..+ ..|++|.-.+ ..       ....+++
T Consensus        81 d~lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~-Sl~Al~~v~ascggd~  157 (1096)
T KOG1859|consen   81 DFLQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHN-SLDALRHVFASCGGDI  157 (1096)
T ss_pred             HHHhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhc-cHHHHHHHHHHhcccc
Confidence            3345555555543321111 14556667788888888877762  2222222 1344443211 11       0011111


Q ss_pred             CcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcccC
Q 036258          148 PSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTT  217 (331)
Q Consensus       148 ~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~  217 (331)
                      ....  .--+|...+.++|.+..+...+.-++.+++|+++.|++...  +.+..++.|++|||+.|.+..
T Consensus       158 ~ns~--~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~  223 (1096)
T KOG1859|consen  158 SNSP--VWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRH  223 (1096)
T ss_pred             ccch--hhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhcc
Confidence            1100  00124444455555554444455455555555555555433  244455555555555555544

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.50  E-value=7.4e-10  Score=90.55  Aligned_cols=178  Identities=22%  Similarity=0.146  Sum_probs=92.9

Q ss_pred             cccccccCccccccccccCCcchhcCCCCCcEEEcCCCCCC-CCcccccCCCCCceeeCcCccc-cc-cCchhccCCCCC
Q 036258          129 KLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLR-TIPNSITNASELTLLELGKNSF-SG-LVPNTFGNLRFL  205 (331)
Q Consensus       129 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~~~~~~~~l~~L~~L~l~~n~~-~~-~~~~~l~~~~~L  205 (331)
                      .++++|+++   ..+.......+...+.+|+.|.+.++.+. .+...+..-.+|+.++++.+.- +. ...-.+.++..|
T Consensus       186 Rlq~lDLS~---s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L  262 (419)
T KOG2120|consen  186 RLQHLDLSN---SVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRL  262 (419)
T ss_pred             hhHHhhcch---hheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhH
Confidence            466677643   22222222233345666777777766665 3334555556677777766532 11 112345566677


Q ss_pred             CEEEccCCcccCccCCCccccccccc-cCCCCcEEEeeccccc--ccCCchhhhccccccEEEeccCcc-cccCCccccC
Q 036258          206 SLLDLGNNYLTTRSSTTEWSFLSSLT-NCIYLKVLGLHSNQLS--GILPPLIGNFSDSLQQFYAYDCEL-KGSIPQEIGN  281 (331)
Q Consensus       206 ~~L~l~~~~l~~~~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~--~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~l~~  281 (331)
                      ..|++++|.+..-.      +...+. --++|+.|+++++.-.  +.--..+..-++.+.+|||++|.. +......+..
T Consensus       263 ~~LNlsWc~l~~~~------Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~k  336 (419)
T KOG2120|consen  263 DELNLSWCFLFTEK------VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFK  336 (419)
T ss_pred             hhcCchHhhccchh------hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHh
Confidence            77777777655411      011111 1245667777665421  111122333344777777777643 3233345566


Q ss_pred             CCCCCEEEccCCCCcccCCc---CccCCCCCCeEeccCC
Q 036258          282 LNGLIDLRLQDNDLNGTIPT---TVGRLQQLQGLFLFGN  317 (331)
Q Consensus       282 l~~L~~L~l~~n~l~~~~~~---~l~~l~~L~~L~l~~n  317 (331)
                      ++.|++|.++.|..-  +|+   .+...|+|.+|++.|+
T Consensus       337 f~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  337 FNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             cchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence            677777777666532  222   3455677777777665

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.47  E-value=3.6e-08  Score=80.84  Aligned_cols=84  Identities=23%  Similarity=0.320  Sum_probs=45.9

Q ss_pred             CCCccEEEcCCCcCccC-CChhhhcCCCCCcEEEccCCcccccCCccC-cCCCCCCEEEccCccccc-cCCccccCcccc
Q 036258           54 ISSLKMIRLSSNSLSGS-LPNDLCNRLPSLEQLVLRSNGFFGQIPLSL-SKCTQLQHLWLEHNKFTG-RLPENIGNLSKL  130 (331)
Q Consensus        54 ~~~L~~L~l~~~~i~~~-~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L  130 (331)
                      .+.++++||.+|.|++. -...+.+.+|+|++|+++.|.+...+. +. ....+|+.|.|.+..+.. .....+..+|.+
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~-~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK-SLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc-cCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            45666677777766531 112334567777777777766542221 12 244566677776665441 233344556666


Q ss_pred             cccccCcc
Q 036258          131 RSLVLGHK  138 (331)
Q Consensus       131 ~~L~l~~~  138 (331)
                      +.|.++.|
T Consensus       149 telHmS~N  156 (418)
T KOG2982|consen  149 TELHMSDN  156 (418)
T ss_pred             hhhhhccc
Confidence            66666555

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.46  E-value=2.4e-09  Score=97.46  Aligned_cols=179  Identities=31%  Similarity=0.395  Sum_probs=94.3

Q ss_pred             hcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCc------cc---ccCCccCcCCCCCCEEEccCccccccCC
Q 036258           51 FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNG------FF---GQIPLSLSKCTQLQHLWLEHNKFTGRLP  121 (331)
Q Consensus        51 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~------i~---~~~~~~~~~l~~L~~L~l~~n~~~~~~~  121 (331)
                      +..++.|++|.+.+|.+. . -.++.+--..|+.|..++.-      +.   +.+..+ .-+..|...++++|.+. ...
T Consensus       105 ifpF~sLr~LElrg~~L~-~-~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns-~~Wn~L~~a~fsyN~L~-~mD  180 (1096)
T KOG1859|consen  105 IFPFRSLRVLELRGCDLS-T-AKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNS-PVWNKLATASFSYNRLV-LMD  180 (1096)
T ss_pred             eccccceeeEEecCcchh-h-hhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccc-hhhhhHhhhhcchhhHH-hHH
Confidence            455677778888777765 2 12221112344444443320      00   111111 11345666666677665 445


Q ss_pred             ccccCcccccccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccC
Q 036258          122 ENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGN  201 (331)
Q Consensus       122 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~  201 (331)
                      .++.-++.++.|+|++|.....     +.+. .+++|++|++++|.++.+|..-..-.+|+.|.+++|.+...  ..+.+
T Consensus       181 ~SLqll~ale~LnLshNk~~~v-----~~Lr-~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL--~gie~  252 (1096)
T KOG1859|consen  181 ESLQLLPALESLNLSHNKFTKV-----DNLR-RLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTL--RGIEN  252 (1096)
T ss_pred             HHHHHHHHhhhhccchhhhhhh-----HHHH-hcccccccccccchhccccccchhhhhheeeeecccHHHhh--hhHHh
Confidence            5566666777777765555433     1222 66777777777777766653222223467777777666532  23455


Q ss_pred             CCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeeccccc
Q 036258          202 LRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLS  247 (331)
Q Consensus       202 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~  247 (331)
                      +.+|+.||++.|-+..-      .-..-+..+..|+.|.|.+|++.
T Consensus       253 LksL~~LDlsyNll~~h------seL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  253 LKSLYGLDLSYNLLSEH------SELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hhhhhccchhHhhhhcc------hhhhHHHHHHHHHHHhhcCCccc
Confidence            66667777777655542      11222344555666666666653

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.43  E-value=2e-09  Score=88.06  Aligned_cols=225  Identities=21%  Similarity=0.189  Sum_probs=133.1

Q ss_pred             CCccEEEcCCCcCccCCChhhhcCC--CCCcEEEccCCccccc-CCccCc-CCCCCCEEEccCccccc-cCCccccCccc
Q 036258           55 SSLKMIRLSSNSLSGSLPNDLCNRL--PSLEQLVLRSNGFFGQ-IPLSLS-KCTQLQHLWLEHNKFTG-RLPENIGNLSK  129 (331)
Q Consensus        55 ~~L~~L~l~~~~i~~~~~~~~~~~~--~~L~~L~L~~n~i~~~-~~~~~~-~l~~L~~L~l~~n~~~~-~~~~~~~~l~~  129 (331)
                      ...+.+|+.+-.|.   |... +.+  .....+.+...-+... +.+.+. .-.+||++||++..++. .+-..+.++.+
T Consensus       136 ~lW~~lDl~~r~i~---p~~l-~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~k  211 (419)
T KOG2120|consen  136 SLWQTLDLTGRNIH---PDVL-GRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSK  211 (419)
T ss_pred             cceeeeccCCCccC---hhHH-HHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHh
Confidence            34677888776554   2211 222  2333334333222111 112222 12468888888877662 23344567788


Q ss_pred             ccccccCccccccccccCCcchhcCCCCCcEEEcCCCC-CCCC--cccccCCCCCceeeCcCccccccC-chhccC-CCC
Q 036258          130 LRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNK-LRTI--PNSITNASELTLLELGKNSFSGLV-PNTFGN-LRF  204 (331)
Q Consensus       130 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~~--~~~~~~l~~L~~L~l~~n~~~~~~-~~~l~~-~~~  204 (331)
                      |+.|.+.+++...   .+...+. .-.+|+.++++.+. +++.  .-.+.+++.|.+|++++|...... .....+ -+.
T Consensus       212 Lk~lSlEg~~LdD---~I~~~iA-kN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~  287 (419)
T KOG2120|consen  212 LKNLSLEGLRLDD---PIVNTIA-KNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISET  287 (419)
T ss_pred             hhhccccccccCc---HHHHHHh-ccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchh
Confidence            8888886555432   3333333 56788888886664 5532  245778889999999988764321 111111 256


Q ss_pred             CCEEEccCCcccCccCCCccccccccccCCCCcEEEeeccc-ccccCCchhhhccccccEEEeccCcccccCCc---ccc
Q 036258          205 LSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQ-LSGILPPLIGNFSDSLQQFYAYDCELKGSIPQ---EIG  280 (331)
Q Consensus       205 L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~l~  280 (331)
                      |..|+++++.-.-...    .+......+|+|.+|||+++. ++......+.+++ .|++|.++.|-..  .|+   .+.
T Consensus       288 l~~LNlsG~rrnl~~s----h~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~-~L~~lSlsRCY~i--~p~~~~~l~  360 (419)
T KOG2120|consen  288 LTQLNLSGYRRNLQKS----HLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFN-YLQHLSLSRCYDI--IPETLLELN  360 (419)
T ss_pred             hhhhhhhhhHhhhhhh----HHHHHHHhCCceeeeccccccccCchHHHHHHhcc-hheeeehhhhcCC--ChHHeeeec
Confidence            8889998874221000    233445788999999999876 3433444566666 8999999988643  444   456


Q ss_pred             CCCCCCEEEccCCC
Q 036258          281 NLNGLIDLRLQDND  294 (331)
Q Consensus       281 ~l~~L~~L~l~~n~  294 (331)
                      ..|+|+.|++-++-
T Consensus       361 s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  361 SKPSLVYLDVFGCV  374 (419)
T ss_pred             cCcceEEEEecccc
Confidence            67889999986654

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.41  E-value=1e-08  Score=74.45  Aligned_cols=106  Identities=20%  Similarity=0.170  Sum_probs=66.6

Q ss_pred             CCceeeCcCcccccc--CchhccCCCCCCEEEccCCcccCccCCCcccccccccc-CCCCcEEEeecccccccCCchhhh
Q 036258          180 ELTLLELGKNSFSGL--VPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTN-CIYLKVLGLHSNQLSGILPPLIGN  256 (331)
Q Consensus       180 ~L~~L~l~~n~~~~~--~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~  256 (331)
                      .+..+++++|++...  ....+.....|...++++|.+...        |..|.. .+.++.+++++|.+. .+|..+..
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~f--------p~kft~kf~t~t~lNl~~neis-dvPeE~Aa   98 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKF--------PKKFTIKFPTATTLNLANNEIS-DVPEELAA   98 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhC--------CHHHhhccchhhhhhcchhhhh-hchHHHhh
Confidence            455666777765421  123344455667777777777643        333333 346777777777776 66666666


Q ss_pred             ccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCc
Q 036258          257 FSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLN  296 (331)
Q Consensus       257 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~  296 (331)
                      ++ .|+.|+++.|.+. ..|.++..+.++-.|+..+|.+.
T Consensus        99 m~-aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen   99 MP-ALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             hH-HhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence            66 7777777777776 56666666777777777777766

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.38  E-value=4.1e-08  Score=79.52  Aligned_cols=241  Identities=17%  Similarity=0.154  Sum_probs=139.5

Q ss_pred             cCCCCCcEEEccCCcccccCC----ccCcCCCCCCEEEccCcccc---ccCC-------ccccCcccccccccCcccccc
Q 036258           77 NRLPSLEQLVLRSNGFFGQIP----LSLSKCTQLQHLWLEHNKFT---GRLP-------ENIGNLSKLRSLVLGHKAHNS  142 (331)
Q Consensus        77 ~~~~~L~~L~L~~n~i~~~~~----~~~~~l~~L~~L~l~~n~~~---~~~~-------~~~~~l~~L~~L~l~~~~~~~  142 (331)
                      ..+..+..++|++|.|.....    ..+.+-.+|+..+++.-...   ..++       .++..+++|+..+++.|.+..
T Consensus        27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~  106 (388)
T COG5238          27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS  106 (388)
T ss_pred             HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence            357889999999998854333    33455577888887753221   1222       345677888888887666554


Q ss_pred             ccccCCcchhcCCCCCcEEEcCCCCCCCCc-----c---------cccCCCCCceeeCcCccccccCc----hhccCCCC
Q 036258          143 LHGHLPSTLSVSLPNLKWLALGMNKLRTIP-----N---------SITNASELTLLELGKNSFSGLVP----NTFGNLRF  204 (331)
Q Consensus       143 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~-----~---------~~~~l~~L~~L~l~~n~~~~~~~----~~l~~~~~  204 (331)
                      -..............|++|.+++|++..+.     .         ...+-+.|+.+..+.|++.....    ..+..-.+
T Consensus       107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~  186 (388)
T COG5238         107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHEN  186 (388)
T ss_pred             ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcC
Confidence            322222222335677888888888776332     1         12234677778777777653221    12222356


Q ss_pred             CCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchh----hhccccccEEEeccCcccccCCccc-
Q 036258          205 LSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLI----GNFSDSLQQFYAYDCELKGSIPQEI-  279 (331)
Q Consensus       205 L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~~~l-  279 (331)
                      |+.+.+..|.|..-+...  -....+..+++|+.|++.+|.++..-...+    ..|+ .|+.|.+.+|-+......++ 
T Consensus       187 lk~vki~qNgIrpegv~~--L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~-~lrEL~lnDClls~~G~~~v~  263 (388)
T COG5238         187 LKEVKIQQNGIRPEGVTM--LAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWN-LLRELRLNDCLLSNEGVKSVL  263 (388)
T ss_pred             ceeEEeeecCcCcchhHH--HHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccc-hhhhccccchhhccccHHHHH
Confidence            788888888776421110  122335567778888888887764433322    2333 57778887777765443322 


Q ss_pred             -----cCCCCCCEEEccCCCCcccCCc-----Cc--cCCCCCCeEeccCCeee
Q 036258          280 -----GNLNGLIDLRLQDNDLNGTIPT-----TV--GRLQQLQGLFLFGNNLQ  320 (331)
Q Consensus       280 -----~~l~~L~~L~l~~n~l~~~~~~-----~l--~~l~~L~~L~l~~n~~~  320 (331)
                           ...|+|..|-..+|...+..-.     .+  ..+|-|..|.++||.+.
T Consensus       264 ~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~  316 (388)
T COG5238         264 RRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK  316 (388)
T ss_pred             HHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence                 2246677777777765542111     11  24566667777777765

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.29  E-value=1.2e-07  Score=76.86  Aligned_cols=167  Identities=23%  Similarity=0.284  Sum_probs=90.4

Q ss_pred             CCCCCcEEEccCCcccccCCc----cCcCCCCCCEEEccCcccccc----CCc---------cccCcccccccccCcccc
Q 036258           78 RLPSLEQLVLRSNGFFGQIPL----SLSKCTQLQHLWLEHNKFTGR----LPE---------NIGNLSKLRSLVLGHKAH  140 (331)
Q Consensus        78 ~~~~L~~L~L~~n~i~~~~~~----~~~~l~~L~~L~l~~n~~~~~----~~~---------~~~~l~~L~~L~l~~~~~  140 (331)
                      +||+|+..+|++|.+....|.    .++.-..|.+|.+++|.+..+    +..         ..++-|.|+.+....|+.
T Consensus        90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl  169 (388)
T COG5238          90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL  169 (388)
T ss_pred             cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh
Confidence            567777777777765433332    234556677777777665411    111         112345666666666665


Q ss_pred             ccccccCCcchhcCCCCCcEEEcCCCCCCC--C----cccccCCCCCceeeCcCccccc----cCchhccCCCCCCEEEc
Q 036258          141 NSLHGHLPSTLSVSLPNLKWLALGMNKLRT--I----PNSITNASELTLLELGKNSFSG----LVPNTFGNLRFLSLLDL  210 (331)
Q Consensus       141 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~--~----~~~~~~l~~L~~L~l~~n~~~~----~~~~~l~~~~~L~~L~l  210 (331)
                      -+.+.......+....+|+++.+.+|++..  +    -..+..+++|+.|++.+|.++.    .+...+..|+.|+.|.+
T Consensus       170 engs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~l  249 (388)
T COG5238         170 ENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRL  249 (388)
T ss_pred             ccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccc
Confidence            555544444444444567777777776651  1    1233445677777777776642    22345556666777777


Q ss_pred             cCCcccCccCCCccccccccc--cCCCCcEEEeeccccc
Q 036258          211 GNNYLTTRSSTTEWSFLSSLT--NCIYLKVLGLHSNQLS  247 (331)
Q Consensus       211 ~~~~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~n~~~  247 (331)
                      ..|.+..-+..   ++...+.  ..|+|+.|...+|-+.
T Consensus       250 nDClls~~G~~---~v~~~f~e~~~p~l~~L~~~Yne~~  285 (388)
T COG5238         250 NDCLLSNEGVK---SVLRRFNEKFVPNLMPLPGDYNERR  285 (388)
T ss_pred             cchhhccccHH---HHHHHhhhhcCCCccccccchhhhc
Confidence            77766543221   2222222  2355666666665543

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.27  E-value=6.9e-06  Score=72.02  Aligned_cols=34  Identities=21%  Similarity=0.348  Sum_probs=18.6

Q ss_pred             ccccccEEEeccCcccccCCccccCCCCCCEEEccCC
Q 036258          257 FSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDN  293 (331)
Q Consensus       257 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n  293 (331)
                      +|++|+.|++.+|... ..|..+-  .+|+.|.++.+
T Consensus       154 LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        154 ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             cCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence            3446777777766654 2333222  35666666554

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.27  E-value=2.4e-06  Score=66.42  Aligned_cols=125  Identities=18%  Similarity=0.184  Sum_probs=86.9

Q ss_pred             CceeeCcCccccccCchhccC-CCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccc
Q 036258          181 LTLLELGKNSFSGLVPNTFGN-LRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSD  259 (331)
Q Consensus       181 L~~L~l~~n~~~~~~~~~l~~-~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~  259 (331)
                      =+++++.+.++..+  +.++. ......++++.|.+...         ..+..++.|.+|.+.+|.|+ .+...+..+.+
T Consensus        21 e~e~~LR~lkip~i--enlg~~~d~~d~iDLtdNdl~~l---------~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p   88 (233)
T KOG1644|consen   21 ERELDLRGLKIPVI--ENLGATLDQFDAIDLTDNDLRKL---------DNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLP   88 (233)
T ss_pred             ccccccccccccch--hhccccccccceecccccchhhc---------ccCCCccccceEEecCCcce-eeccchhhhcc
Confidence            45666666665422  12332 23567788888877642         34777888999999999998 44555555555


Q ss_pred             cccEEEeccCcccccC-CccccCCCCCCEEEccCCCCcccC---CcCccCCCCCCeEeccCC
Q 036258          260 SLQQFYAYDCELKGSI-PQEIGNLNGLIDLRLQDNDLNGTI---PTTVGRLQQLQGLFLFGN  317 (331)
Q Consensus       260 ~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~n~l~~~~---~~~l~~l~~L~~L~l~~n  317 (331)
                      .+..|.|.+|++.... .+-+..||+|+.|.+-+|+++..-   .-.+..+|+|+.||+++-
T Consensus        89 ~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen   89 NLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             ccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            8999999999887321 335678899999999999987421   123567899999998763

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.27  E-value=4.9e-07  Score=53.03  Aligned_cols=36  Identities=28%  Similarity=0.491  Sum_probs=16.1

Q ss_pred             CCCEEEccCCCCcccCCcCccCCCCCCeEeccCCeee
Q 036258          284 GLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQ  320 (331)
Q Consensus       284 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  320 (331)
                      +|++|++++|.|+ .+|..++++++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            3444444444444 33333444455555555555444

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.09  E-value=1.9e-07  Score=67.89  Aligned_cols=108  Identities=27%  Similarity=0.389  Sum_probs=47.6

Q ss_pred             ccEEEcCCCcCccCCChhhh--cCCCCCcEEEccCCcccccCCccCc-CCCCCCEEEccCccccccCCccccCccccccc
Q 036258           57 LKMIRLSSNSLSGSLPNDLC--NRLPSLEQLVLRSNGFFGQIPLSLS-KCTQLQHLWLEHNKFTGRLPENIGNLSKLRSL  133 (331)
Q Consensus        57 L~~L~l~~~~i~~~~~~~~~--~~~~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  133 (331)
                      +..++|+.|++. .+++.+.  ....+|...+|++|.+. ..|+.|. ..+.++.|++++|.++ .+|..++.++.|+.|
T Consensus        29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL  105 (177)
T ss_pred             hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence            334555555543 4443321  12334444455555554 2333332 3345555555555555 445445555555555


Q ss_pred             ccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCc
Q 036258          134 VLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIP  172 (331)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~  172 (331)
                      +++.|..+..    +..++ .+.++-.|+...|.+.+++
T Consensus       106 Nl~~N~l~~~----p~vi~-~L~~l~~Lds~~na~~eid  139 (177)
T KOG4579|consen  106 NLRFNPLNAE----PRVIA-PLIKLDMLDSPENARAEID  139 (177)
T ss_pred             ccccCccccc----hHHHH-HHHhHHHhcCCCCccccCc
Confidence            5543333321    12222 2444444444555444444

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.05  E-value=9.2e-06  Score=63.28  Aligned_cols=106  Identities=24%  Similarity=0.296  Sum_probs=57.7

Q ss_pred             CCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccccCccccccccccCCcchhcCCCCC
Q 036258           79 LPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNL  158 (331)
Q Consensus        79 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L  158 (331)
                      ..+...++|++|.+.. + ..|..+++|.+|.+.+|+++.+.|.--.-+++|..|.+.+|++..+.+--+-   ..+|+|
T Consensus        41 ~d~~d~iDLtdNdl~~-l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pL---a~~p~L  115 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRK-L-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPL---ASCPKL  115 (233)
T ss_pred             ccccceecccccchhh-c-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchh---ccCCcc
Confidence            4456666777776642 2 3456667777777777777644443333345566666655555554322111   145666


Q ss_pred             cEEEcCCCCCCCCc----ccccCCCCCceeeCcCc
Q 036258          159 KWLALGMNKLRTIP----NSITNASELTLLELGKN  189 (331)
Q Consensus       159 ~~L~l~~~~l~~~~----~~~~~l~~L~~L~l~~n  189 (331)
                      ++|.+-+|.+..-.    ..+..+++|+.|++..-
T Consensus       116 ~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  116 EYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             ceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            66666666554222    33455566666665543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.04  E-value=9.9e-07  Score=83.40  Aligned_cols=211  Identities=23%  Similarity=0.244  Sum_probs=129.5

Q ss_pred             hcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCcc-------------C--cCCCCCCEEEccCcc
Q 036258           51 FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLS-------------L--SKCTQLQHLWLEHNK  115 (331)
Q Consensus        51 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~-------------~--~~l~~L~~L~l~~n~  115 (331)
                      +..--+++.+++.+.... .....+..... |+.+.+.+-......-..             +  ..-.+|++|++++..
T Consensus        56 ~~~~f~ltki~l~~~~~~-~~~~~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~  133 (699)
T KOG3665|consen   56 IIRKFNLTKIDLKNVTLQ-HQTLEMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSE  133 (699)
T ss_pred             hhhhheeEEeeccceecc-hhHHHHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccc
Confidence            444456777777776554 22223323333 777777764322110000             0  112589999998864


Q ss_pred             cc-ccCCccc-cCcccccccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccc
Q 036258          116 FT-GRLPENI-GNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSG  193 (331)
Q Consensus       116 ~~-~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~  193 (331)
                      .- ..-+..+ .-+|.|+.|.+.+.....   .-...++..+|+|..||+++++++.+ .+++.+++|+.|.+.+-.+..
T Consensus       134 ~~s~~W~~kig~~LPsL~sL~i~~~~~~~---~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~  209 (699)
T KOG3665|consen  134 LFSNGWPKKIGTMLPSLRSLVISGRQFDN---DDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFES  209 (699)
T ss_pred             hhhccHHHHHhhhCcccceEEecCceecc---hhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCc
Confidence            32 1111222 357899999886533322   22345666899999999999999877 688999999999988876653


Q ss_pred             c-CchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEecc
Q 036258          194 L-VPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYD  268 (331)
Q Consensus       194 ~-~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~  268 (331)
                      . .-..+..+.+|++||++......... .-..+.+.-..+|+|+.||.++..+.+.+-+.+-...++|+.+..-+
T Consensus       210 ~~~l~~LF~L~~L~vLDIS~~~~~~~~~-ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~~  284 (699)
T KOG3665|consen  210 YQDLIDLFNLKKLRVLDISRDKNNDDTK-IIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAALD  284 (699)
T ss_pred             hhhHHHHhcccCCCeeeccccccccchH-HHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhhhh
Confidence            1 11346678999999999875544220 00023334456889999999988887666655544444666555443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.96  E-value=1.9e-05  Score=58.74  Aligned_cols=86  Identities=17%  Similarity=0.339  Sum_probs=47.5

Q ss_pred             CCcchhcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCcccc
Q 036258           46 LTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIG  125 (331)
Q Consensus        46 ~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~  125 (331)
                      ++.++|.++++|+.+.+.. .+. .++...|..+++|+.+.+..+ +.......|..+++|+.+.+.. .+.......|.
T Consensus         3 i~~~~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~   78 (129)
T PF13306_consen    3 IGNNAFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFS   78 (129)
T ss_dssp             E-TTTTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTT
T ss_pred             ECHHHHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccc
Confidence            4556788888888888864 455 677777788878888888764 5545556677777788888865 33323334555


Q ss_pred             Cccccccccc
Q 036258          126 NLSKLRSLVL  135 (331)
Q Consensus       126 ~l~~L~~L~l  135 (331)
                      .+++|+.+++
T Consensus        79 ~~~~l~~i~~   88 (129)
T PF13306_consen   79 NCTNLKNIDI   88 (129)
T ss_dssp             T-TTECEEEE
T ss_pred             cccccccccc
Confidence            5666666665

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.89  E-value=1.4e-05  Score=46.80  Aligned_cols=36  Identities=33%  Similarity=0.524  Sum_probs=18.3

Q ss_pred             CCcEEEcCCCCCCCCcccccCCCCCceeeCcCcccc
Q 036258          157 NLKWLALGMNKLRTIPNSITNASELTLLELGKNSFS  192 (331)
Q Consensus       157 ~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~  192 (331)
                      +|++|++++|+++.+|..+.++++|+.|++++|.+.
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence            455555555555555544555555555555555544

...

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.85  E-value=4e-05  Score=56.97  Aligned_cols=126  Identities=20%  Similarity=0.253  Sum_probs=55.1

Q ss_pred             CCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccccCccccccccccCCc
Q 036258           70 SLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPS  149 (331)
Q Consensus        70 ~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~  149 (331)
                      .+++..|..+.+|+.+.+.. .+..+....|..+.+|+.+.+..+ +.......|..+++++.+.+.. ...    .+..
T Consensus         2 ~i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~----~i~~   74 (129)
T PF13306_consen    2 SIGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK----SIGD   74 (129)
T ss_dssp             EE-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-----EE-T
T ss_pred             EECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc----cccc
Confidence            45667778888888888875 455566667888888888888775 5434445666666677776632 111    2333


Q ss_pred             chhcCCCCCcEEEcCCCCCCCCc-ccccCCCCCceeeCcCccccccCchhccCCCCC
Q 036258          150 TLSVSLPNLKWLALGMNKLRTIP-NSITNASELTLLELGKNSFSGLVPNTFGNLRFL  205 (331)
Q Consensus       150 ~~~~~l~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L  205 (331)
                      ..|..+++++.+.+..+ +..++ ..+... .++.+.+.. .+.......|.++++|
T Consensus        75 ~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   75 NAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             TTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             ccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            44444566666666443 33332 334443 555555543 2222333444444433

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.83  E-value=7.7e-06  Score=77.47  Aligned_cols=141  Identities=19%  Similarity=0.223  Sum_probs=67.3

Q ss_pred             ccccccccCccccccccccCCcchhcCCCCCcEEEcCCCCCC--CCcccccCCCCCceeeCcCccccccCchhccCCCCC
Q 036258          128 SKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLR--TIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFL  205 (331)
Q Consensus       128 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L  205 (331)
                      .+|++|++++  ...+....+...+..+|.|+.|.+.+-.+.  .+.....++++|..||+++..+...  ..++.+++|
T Consensus       122 ~nL~~LdI~G--~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknL  197 (699)
T KOG3665|consen  122 QNLQHLDISG--SELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNL  197 (699)
T ss_pred             HhhhhcCccc--cchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccH
Confidence            3556666643  222233334444445566666666554443  2223344555556666655555433  334455555


Q ss_pred             CEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCC
Q 036258          206 SLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGL  285 (331)
Q Consensus       206 ~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L  285 (331)
                      +.|.+.+-.+...      .....+.++++|+.||++....... +....                  ...+.-..+|.|
T Consensus       198 q~L~mrnLe~e~~------~~l~~LF~L~~L~vLDIS~~~~~~~-~~ii~------------------qYlec~~~LpeL  252 (699)
T KOG3665|consen  198 QVLSMRNLEFESY------QDLIDLFNLKKLRVLDISRDKNNDD-TKIIE------------------QYLECGMVLPEL  252 (699)
T ss_pred             HHHhccCCCCCch------hhHHHHhcccCCCeeeccccccccc-hHHHH------------------HHHHhcccCccc
Confidence            5555555444431      1222344555555555555443311 11111                  111223346677


Q ss_pred             CEEEccCCCCcc
Q 036258          286 IDLRLQDNDLNG  297 (331)
Q Consensus       286 ~~L~l~~n~l~~  297 (331)
                      +.||.++..+.+
T Consensus       253 rfLDcSgTdi~~  264 (699)
T KOG3665|consen  253 RFLDCSGTDINE  264 (699)
T ss_pred             cEEecCCcchhH
Confidence            777777777654

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.81  E-value=3.2e-07  Score=78.72  Aligned_cols=136  Identities=19%  Similarity=0.169  Sum_probs=70.6

Q ss_pred             CCCCCceeeCcCcccc-ccCchhc-cCCCCCCEEEccCCc-ccCccCCCccccccccccCCCCcEEEeecccccccC-Cc
Q 036258          177 NASELTLLELGKNSFS-GLVPNTF-GNLRFLSLLDLGNNY-LTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGIL-PP  252 (331)
Q Consensus       177 ~l~~L~~L~l~~n~~~-~~~~~~l-~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~  252 (331)
                      .+..|+.+..+++... ...-..+ .+..+|+.+-+++|. ++..      .+...-.+++.|+.+++..+...... ..
T Consensus       292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~------~ft~l~rn~~~Le~l~~e~~~~~~d~tL~  365 (483)
T KOG4341|consen  292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDR------GFTMLGRNCPHLERLDLEECGLITDGTLA  365 (483)
T ss_pred             hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhh------hhhhhhcCChhhhhhcccccceehhhhHh
Confidence            3456666666654332 1111222 355677777777764 2221      12222345666777777665532111 12


Q ss_pred             hhhhccccccEEEeccCccc-cc----CCccccCCCCCCEEEccCCCCc-ccCCcCccCCCCCCeEeccCCe
Q 036258          253 LIGNFSDSLQQFYAYDCELK-GS----IPQEIGNLNGLIDLRLQDNDLN-GTIPTTVGRLQQLQGLFLFGNN  318 (331)
Q Consensus       253 ~~~~~~~~L~~L~l~~~~~~-~~----~~~~l~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~  318 (331)
                      .++...+.++.+.+++|... ++    +...-.++..|..+-+++++.. +..-+.+..++.|+++++-+++
T Consensus       366 sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  366 SLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             hhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence            22333347777777776543 21    1222244556677777777644 2333445667777777777665

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.71  E-value=0.00022  Score=62.80  Aligned_cols=137  Identities=23%  Similarity=0.301  Sum_probs=84.8

Q ss_pred             hcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCc-cccccCCccccCccc
Q 036258           51 FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHN-KFTGRLPENIGNLSK  129 (331)
Q Consensus        51 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~  129 (331)
                      +..+++++.|++++|.++ .+|. +   ..+|+.|.+++|.-...+|..+  .++|++|++++| .+. .+|.      .
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~-L---P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------s  113 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV-L---PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE------S  113 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC-C---CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc------c
Confidence            445688999999999888 8872 2   4579999999865434666544  358999999998 554 4443      4


Q ss_pred             ccccccCccccccccccCCcchhcCCCCCcEEEcCCCCCC---CCcccccCCCCCceeeCcCccccccCchhccCCCCCC
Q 036258          130 LRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLR---TIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLS  206 (331)
Q Consensus       130 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~---~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~  206 (331)
                      |+.|++.++....+. .+|       ++|+.|.+.++...   .++..+  .++|++|.+++|... ..|..+.  .+|+
T Consensus       114 Le~L~L~~n~~~~L~-~LP-------ssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i-~LP~~LP--~SLk  180 (426)
T PRK15386        114 VRSLEIKGSATDSIK-NVP-------NGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNI-ILPEKLP--ESLQ  180 (426)
T ss_pred             cceEEeCCCCCcccc-cCc-------chHhheecccccccccccccccc--CCcccEEEecCCCcc-cCccccc--ccCc
Confidence            666666543333221 222       35667776433211   122111  257888888887754 2333333  4788


Q ss_pred             EEEccCCc
Q 036258          207 LLDLGNNY  214 (331)
Q Consensus       207 ~L~l~~~~  214 (331)
                      .|.++.+.
T Consensus       181 ~L~ls~n~  188 (426)
T PRK15386        181 SITLHIEQ  188 (426)
T ss_pred             EEEecccc
Confidence            88887653

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.53  E-value=3.3e-05  Score=62.72  Aligned_cols=110  Identities=25%  Similarity=0.329  Sum_probs=64.8

Q ss_pred             hhcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCC--cccccCCccCcCCCCCCEEEccCccccc-cCCccccC
Q 036258           50 CFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSN--GFFGQIPLSLSKCTQLQHLWLEHNKFTG-RLPENIGN  126 (331)
Q Consensus        50 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n--~i~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~  126 (331)
                      ++..+..|+.|++.+..++ .+-.  |-.+++|+.|.++.|  .+.+.++.....+|+|+++++++|++.. ..-..+..
T Consensus        38 l~d~~~~le~ls~~n~glt-t~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~  114 (260)
T KOG2739|consen   38 LTDEFVELELLSVINVGLT-TLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKE  114 (260)
T ss_pred             ccccccchhhhhhhcccee-eccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhh
Confidence            4556677777878887766 3322  235889999999988  5554444444566999999999998762 11123345


Q ss_pred             cccccccccCccccccccccCCcchhcCCCCCcEEEc
Q 036258          127 LSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLAL  163 (331)
Q Consensus       127 l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l  163 (331)
                      +.+|..|++.++...+.. ..-..+|.-+++|++++-
T Consensus       115 l~nL~~Ldl~n~~~~~l~-dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  115 LENLKSLDLFNCSVTNLD-DYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             hcchhhhhcccCCccccc-cHHHHHHHHhhhhccccc
Confidence            556666666544443321 111223334455554443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.21  E-value=1.1e-05  Score=69.56  Aligned_cols=136  Identities=21%  Similarity=0.150  Sum_probs=87.9

Q ss_pred             CCCCCcEEEcCCCCC-CC--CcccccCCCCCceeeCcCccc-cccCchhc-cCCCCCCEEEccCCcccCccCCCcccccc
Q 036258          154 SLPNLKWLALGMNKL-RT--IPNSITNASELTLLELGKNSF-SGLVPNTF-GNLRFLSLLDLGNNYLTTRSSTTEWSFLS  228 (331)
Q Consensus       154 ~l~~L~~L~l~~~~l-~~--~~~~~~~l~~L~~L~l~~n~~-~~~~~~~l-~~~~~L~~L~l~~~~l~~~~~~~~~~~~~  228 (331)
                      .+..|++++.+++.- +.  +..-..+..+|+.+.+.+++- ++..-..+ .+++.|+.+++..+......     .+..
T Consensus       292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~-----tL~s  366 (483)
T KOG4341|consen  292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG-----TLAS  366 (483)
T ss_pred             hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh-----hHhh
Confidence            567788888866653 21  123335568999999998863 22211223 46788999999988665421     3455


Q ss_pred             ccccCCCCcEEEeecccc-cccCCchh---hhccccccEEEeccCccc-ccCCccccCCCCCCEEEccCCC
Q 036258          229 SLTNCIYLKVLGLHSNQL-SGILPPLI---GNFSDSLQQFYAYDCELK-GSIPQEIGNLNGLIDLRLQDND  294 (331)
Q Consensus       229 ~~~~~~~L~~L~l~~n~~-~~~~~~~~---~~~~~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~n~  294 (331)
                      .-.+++.|+.+.++.+.. +++.-..+   ......++.+.|.++..+ +..-+.+..+++|+.+++-++.
T Consensus       367 ls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  367 LSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             hccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence            567889999999997653 22211111   122237888999999765 3445567788899998887665

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.04  E-value=0.00023  Score=57.91  Aligned_cols=59  Identities=31%  Similarity=0.329  Sum_probs=29.6

Q ss_pred             CCCCcEEEcCCCCCCCCc--ccccCCCCCceeeCcCccccccC---chhccCCCCCCEEEccCC
Q 036258          155 LPNLKWLALGMNKLRTIP--NSITNASELTLLELGKNSFSGLV---PNTFGNLRFLSLLDLGNN  213 (331)
Q Consensus       155 l~~L~~L~l~~~~l~~~~--~~~~~l~~L~~L~l~~n~~~~~~---~~~l~~~~~L~~L~l~~~  213 (331)
                      +|+|+++++++|++..+.  ..+..+.+|..|++..|......   ...|.-+++|++|+-...
T Consensus        90 ~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen   90 APNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV  153 (260)
T ss_pred             CCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence            356666666666655321  23344455666666666544311   123444566666654443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.02  E-value=0.00032  Score=34.20  Aligned_cols=22  Identities=50%  Similarity=0.612  Sum_probs=17.2

Q ss_pred             CCCeEeccCCeeeecCCccccCC
Q 036258          308 QLQGLFLFGNNLQGSIPSDLCHW  330 (331)
Q Consensus       308 ~L~~L~l~~n~~~~~~p~~~~~~  330 (331)
                      +|++|++++|+++ .+|+.|++|
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSNL   22 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT-
T ss_pred             CccEEECCCCcCE-eCChhhcCC
Confidence            4788888888888 888887764

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.01  E-value=2e-05  Score=64.53  Aligned_cols=98  Identities=20%  Similarity=0.274  Sum_probs=42.5

Q ss_pred             CCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccccCC-chhhhcc
Q 036258          180 ELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILP-PLIGNFS  258 (331)
Q Consensus       180 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~  258 (331)
                      +++.|++-+|.+.++  .....++.|++|.|+-|+|++.         ..+..|++|++|.|..|.|.+..- ..+..++
T Consensus        20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL---------~pl~rCtrLkElYLRkN~I~sldEL~YLknlp   88 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL---------APLQRCTRLKELYLRKNCIESLDELEYLKNLP   88 (388)
T ss_pred             HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc---------hhHHHHHHHHHHHHHhcccccHHHHHHHhcCc
Confidence            344444444444432  2233444555555555554431         224445555555555554431111 1122222


Q ss_pred             ccccEEEeccCcccccCCc-----cccCCCCCCEEE
Q 036258          259 DSLQQFYAYDCELKGSIPQ-----EIGNLNGLIDLR  289 (331)
Q Consensus       259 ~~L~~L~l~~~~~~~~~~~-----~l~~l~~L~~L~  289 (331)
                       +|+.|.|..|...+..+.     ++.-+|+|+.||
T Consensus        89 -sLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   89 -SLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             -hhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence             455555544444433221     445566666664

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.97  E-value=2.5e-05  Score=63.98  Aligned_cols=77  Identities=30%  Similarity=0.489  Sum_probs=38.3

Q ss_pred             CccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCC-ccccCcccccccc
Q 036258           56 SLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLP-ENIGNLSKLRSLV  134 (331)
Q Consensus        56 ~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~  134 (331)
                      +.+.|++-||++. .|  .++..|+.|++|.|+-|+|+...  .+..+.+|++|+|..|.+....- ..+.++++|+.|-
T Consensus        20 ~vkKLNcwg~~L~-DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   20 NVKKLNCWGCGLD-DI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HhhhhcccCCCcc-HH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            3445555555554 22  23345666666666666555332  24555666666666665541110 2334555555555


Q ss_pred             cCc
Q 036258          135 LGH  137 (331)
Q Consensus       135 l~~  137 (331)
                      |..
T Consensus        95 L~E   97 (388)
T KOG2123|consen   95 LDE   97 (388)
T ss_pred             hcc
Confidence            533

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.85  E-value=0.00058  Score=62.90  Aligned_cols=34  Identities=26%  Similarity=0.158  Sum_probs=16.9

Q ss_pred             CCEEEccCCCCcc-cCCcCccC-CCCCCeEeccCCe
Q 036258          285 LIDLRLQDNDLNG-TIPTTVGR-LQQLQGLFLFGNN  318 (331)
Q Consensus       285 L~~L~l~~n~l~~-~~~~~l~~-l~~L~~L~l~~n~  318 (331)
                      ++.|+++.+.... ..-..... +..++.+++.++.
T Consensus       403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~  438 (482)
T KOG1947|consen  403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCR  438 (482)
T ss_pred             cceEecccCccccccchHHHhhhhhccccCCccCcc
Confidence            5677776665431 11111111 4556667676665

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.82  E-value=1.4e-05  Score=72.43  Aligned_cols=138  Identities=22%  Similarity=0.250  Sum_probs=78.8

Q ss_pred             CCcEEEcCCCCCC-----CCcccccCCCCCceeeCcCccccc----cCchhc----cCCCCCCEEEccCCcccCccCCCc
Q 036258          157 NLKWLALGMNKLR-----TIPNSITNASELTLLELGKNSFSG----LVPNTF----GNLRFLSLLDLGNNYLTTRSSTTE  223 (331)
Q Consensus       157 ~L~~L~l~~~~l~-----~~~~~~~~l~~L~~L~l~~n~~~~----~~~~~l----~~~~~L~~L~l~~~~l~~~~~~~~  223 (331)
                      .+++|.+..|.++     .+...+.....++.++++.|.+..    ..+..+    ....++++|++++|.++.....  
T Consensus       145 ~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~--  222 (478)
T KOG4308|consen  145 LLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCA--  222 (478)
T ss_pred             HHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHH--
Confidence            3445555555554     234555556677777777776531    112222    2356788888888877643222  


Q ss_pred             cccccccccCCC-CcEEEeecccccccCC----chhhhccccccEEEeccCccccc----CCccccCCCCCCEEEccCCC
Q 036258          224 WSFLSSLTNCIY-LKVLGLHSNQLSGILP----PLIGNFSDSLQQFYAYDCELKGS----IPQEIGNLNGLIDLRLQDND  294 (331)
Q Consensus       224 ~~~~~~~~~~~~-L~~L~l~~n~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~n~  294 (331)
                       .+...+...+. +..|++..|.+.+...    +.+......++++++..|.+++.    +...+..+++++.+.+..|+
T Consensus       223 -~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~  301 (478)
T KOG4308|consen  223 -LLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNP  301 (478)
T ss_pred             -HHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCc
Confidence             23334445555 5667887777664422    22222323567777777777743    34445566677777777777


Q ss_pred             Ccc
Q 036258          295 LNG  297 (331)
Q Consensus       295 l~~  297 (331)
                      +..
T Consensus       302 l~~  304 (478)
T KOG4308|consen  302 LTD  304 (478)
T ss_pred             ccc
Confidence            663

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.68  E-value=0.0016  Score=59.99  Aligned_cols=113  Identities=24%  Similarity=0.214  Sum_probs=55.4

Q ss_pred             CCCCccEEEcCCCc-CccCC-ChhhhcCCCCCcEEEccCC-cccccC----CccCcCCCCCCEEEccCcc-ccccCCccc
Q 036258           53 NISSLKMIRLSSNS-LSGSL-PNDLCNRLPSLEQLVLRSN-GFFGQI----PLSLSKCTQLQHLWLEHNK-FTGRLPENI  124 (331)
Q Consensus        53 ~~~~L~~L~l~~~~-i~~~~-~~~~~~~~~~L~~L~L~~n-~i~~~~----~~~~~~l~~L~~L~l~~n~-~~~~~~~~~  124 (331)
                      .++.|+.|.+.++. +. .. -..+...+++|+.|+++++ ......    ......+++|+.++++++. ++...-..+
T Consensus       186 ~~~~L~~l~l~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l  264 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKIT-DDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL  264 (482)
T ss_pred             hCchhhHhhhcccccCC-hhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence            45677777776663 33 21 1223356777777777652 111111    1122345667777777665 442222222


Q ss_pred             cC-cccccccccCccccccccccCCcchhcCCCCCcEEEcCCCCC
Q 036258          125 GN-LSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKL  168 (331)
Q Consensus       125 ~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l  168 (331)
                      +. +++|++|.+.+...  ++......+...++.|++|++.++..
T Consensus       265 ~~~c~~L~~L~l~~c~~--lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  265 ASRCPNLETLSLSNCSN--LTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             HhhCCCcceEccCCCCc--cchhHHHHHHHhcCcccEEeeecCcc
Confidence            22 55666666422111  22222333444566677777765543

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.45  E-value=0.0078  Score=27.13  Aligned_cols=16  Identities=44%  Similarity=0.561  Sum_probs=7.2

Q ss_pred             CCCeEeccCCeeeecCC
Q 036258          308 QLQGLFLFGNNLQGSIP  324 (331)
Q Consensus       308 ~L~~L~l~~n~~~~~~p  324 (331)
                      +|+.|++++|+++ ++|
T Consensus         2 ~L~~L~l~~n~L~-~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLT-SLP   17 (17)
T ss_dssp             T-SEEEETSS--S-SE-
T ss_pred             ccCEEECCCCCCC-CCc
Confidence            4666666666655 443

...

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.35  E-value=5.6e-05  Score=68.70  Aligned_cols=188  Identities=24%  Similarity=0.272  Sum_probs=84.4

Q ss_pred             ccEEEcCCCcCccCCCh---hhhcCCCCCcEEEccCCccccc----CCccCcCC-CCCCEEEccCccccc----cCCccc
Q 036258           57 LKMIRLSSNSLSGSLPN---DLCNRLPSLEQLVLRSNGFFGQ----IPLSLSKC-TQLQHLWLEHNKFTG----RLPENI  124 (331)
Q Consensus        57 L~~L~l~~~~i~~~~~~---~~~~~~~~L~~L~L~~n~i~~~----~~~~~~~l-~~L~~L~l~~n~~~~----~~~~~~  124 (331)
                      +..|.+.+|.+.+....   ..+...+.|..|++++|.+...    +-..+... ..+++|++..|.++.    .+...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            55555655555422111   1224455566666666554310    00111221 344555555554442    222333


Q ss_pred             cCcccccccccCccccccccccCCcch----hcCCCCCcEEEcCCCCCCC-----CcccccCCCC-CceeeCcCcccccc
Q 036258          125 GNLSKLRSLVLGHKAHNSLHGHLPSTL----SVSLPNLKWLALGMNKLRT-----IPNSITNASE-LTLLELGKNSFSGL  194 (331)
Q Consensus       125 ~~l~~L~~L~l~~~~~~~~~~~~~~~~----~~~l~~L~~L~l~~~~l~~-----~~~~~~~l~~-L~~L~l~~n~~~~~  194 (331)
                      .....++.++++.|.............    +....++++|++.++.++.     +...+...+. +.++++..|.+.+.
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            344555555554444432221111111    1134556666666665541     1233333333 45566666655432


Q ss_pred             ----CchhccCC-CCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeeccccc
Q 036258          195 ----VPNTFGNL-RFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLS  247 (331)
Q Consensus       195 ----~~~~l~~~-~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~  247 (331)
                          ....+..+ ..++++++..|.++.-...   .+...+..++.++.+.++.|.+.
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~---~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVR---DLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcCCccccchH---HHHHHHhhhHHHHHhhcccCccc
Confidence                11233333 4456666666666553322   23444455556666666666554

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.04  E-value=0.011  Score=28.65  Aligned_cols=11  Identities=9%  Similarity=-0.016  Sum_probs=4.3

Q ss_pred             cEEEeccCccc
Q 036258          262 QQFYAYDCELK  272 (331)
Q Consensus       262 ~~L~l~~~~~~  272 (331)
                      ++|++++|+++
T Consensus         3 ~~Ldls~n~l~   13 (22)
T PF00560_consen    3 EYLDLSGNNLT   13 (22)
T ss_dssp             SEEEETSSEES
T ss_pred             cEEECCCCcCE
Confidence            33344444333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.97  E-value=0.028  Score=28.47  Aligned_cols=23  Identities=39%  Similarity=0.585  Sum_probs=16.9

Q ss_pred             CCCccEEEcCCCcCccCCChhhhc
Q 036258           54 ISSLKMIRLSSNSLSGSLPNDLCN   77 (331)
Q Consensus        54 ~~~L~~L~l~~~~i~~~~~~~~~~   77 (331)
                      +++|+.|++++|++. .+|..+|.
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~f~   23 (26)
T smart00369        1 LPNLRELDLSNNQLS-SLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHHcc
Confidence            356788888888887 77777654

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.97  E-value=0.028  Score=28.47  Aligned_cols=23  Identities=39%  Similarity=0.585  Sum_probs=16.9

Q ss_pred             CCCccEEEcCCCcCccCCChhhhc
Q 036258           54 ISSLKMIRLSSNSLSGSLPNDLCN   77 (331)
Q Consensus        54 ~~~L~~L~l~~~~i~~~~~~~~~~   77 (331)
                      +++|+.|++++|++. .+|..+|.
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~f~   23 (26)
T smart00370        1 LPNLRELDLSNNQLS-SLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHHcc
Confidence            356788888888887 77777654

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=93.23  E-value=0.0096  Score=29.55  Aligned_cols=20  Identities=25%  Similarity=0.194  Sum_probs=10.5

Q ss_pred             CCCCeEeccCCeeeecCCcc
Q 036258          307 QQLQGLFLFGNNLQGSIPSD  326 (331)
Q Consensus       307 ~~L~~L~l~~n~~~~~~p~~  326 (331)
                      ++|++|++++|.+++..+..
T Consensus         2 ~~L~~L~l~~n~i~~~g~~~   21 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGASA   21 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHHHH
T ss_pred             CCCCEEEccCCcCCHHHHHH
Confidence            45666666666666544433

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.25  E-value=0.1  Score=26.29  Aligned_cols=21  Identities=38%  Similarity=0.491  Sum_probs=15.0

Q ss_pred             CCCCCeEeccCCeeeecCCccc
Q 036258          306 LQQLQGLFLFGNNLQGSIPSDL  327 (331)
Q Consensus       306 l~~L~~L~l~~n~~~~~~p~~~  327 (331)
                      +++|++|++++|.++ .+|+..
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~   21 (26)
T smart00369        1 LPNLRELDLSNNQLS-SLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHH
Confidence            356778888888887 777643

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.25  E-value=0.1  Score=26.29  Aligned_cols=21  Identities=38%  Similarity=0.491  Sum_probs=15.0

Q ss_pred             CCCCCeEeccCCeeeecCCccc
Q 036258          306 LQQLQGLFLFGNNLQGSIPSDL  327 (331)
Q Consensus       306 l~~L~~L~l~~n~~~~~~p~~~  327 (331)
                      +++|++|++++|.++ .+|+..
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~~   21 (26)
T smart00370        1 LPNLRELDLSNNQLS-SLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHHH
Confidence            356778888888887 777643

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.61  E-value=0.018  Score=45.34  Aligned_cols=34  Identities=18%  Similarity=0.185  Sum_probs=20.7

Q ss_pred             CCceeeCcCccccccCchhccCCCCCCEEEccCC
Q 036258          180 ELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNN  213 (331)
Q Consensus       180 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~  213 (331)
                      .++.++.++..|..+.-+.+..++.++.|.+..|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c  135 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC  135 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence            4566666666665554455666666666666555

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=90.21  E-value=0.19  Score=25.37  Aligned_cols=18  Identities=33%  Similarity=0.488  Sum_probs=13.8

Q ss_pred             CCCCeEeccCCeeeecCCc
Q 036258          307 QQLQGLFLFGNNLQGSIPS  325 (331)
Q Consensus       307 ~~L~~L~l~~n~~~~~~p~  325 (331)
                      ++|+.|++++|+++ ++|+
T Consensus         2 ~~L~~L~vs~N~Lt-~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLT-SLPE   19 (26)
T ss_pred             cccceeecCCCccc-cCcc
Confidence            35778888888888 7776

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=87.04  E-value=0.015  Score=46.90  Aligned_cols=80  Identities=18%  Similarity=0.189  Sum_probs=45.1

Q ss_pred             CCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCccccccc
Q 036258           54 ISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSL  133 (331)
Q Consensus        54 ~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  133 (331)
                      +...++||++.+++. .+...+ .-+..+..|+++.|.+. ..|+.++....++.+++.+|..+ ..|.++...+.++++
T Consensus        41 ~kr~tvld~~s~r~v-n~~~n~-s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~  116 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLV-NLGKNF-SILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN  116 (326)
T ss_pred             cceeeeehhhhhHHH-hhccch-HHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence            355566666666554 333332 34555666666666554 55555666666666666655555 556666666666666


Q ss_pred             ccCc
Q 036258          134 VLGH  137 (331)
Q Consensus       134 ~l~~  137 (331)
                      ++.+
T Consensus       117 e~k~  120 (326)
T KOG0473|consen  117 EQKK  120 (326)
T ss_pred             hhcc
Confidence            6543

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.42  E-value=0.18  Score=39.99  Aligned_cols=80  Identities=16%  Similarity=0.123  Sum_probs=39.7

Q ss_pred             CCcEEEcCCCCCCCCc-ccccCCCCCceeeCcCcccccc-Cchhcc-CCCCCCEEEccCC-cccCccCCCcccccccccc
Q 036258          157 NLKWLALGMNKLRTIP-NSITNASELTLLELGKNSFSGL-VPNTFG-NLRFLSLLDLGNN-YLTTRSSTTEWSFLSSLTN  232 (331)
Q Consensus       157 ~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~n~~~~~-~~~~l~-~~~~L~~L~l~~~-~l~~~~~~~~~~~~~~~~~  232 (331)
                      .+++++-+++.+.... ..+..++.++.|.+.+|.--+. .-+-++ -.++|+.|++++| .|+.       .....+..
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~-------~GL~~L~~  174 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD-------GGLACLLK  174 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech-------hHHHHHHH
Confidence            3556666666554221 3455556666666665543211 001111 2456667777666 4444       23334555


Q ss_pred             CCCCcEEEeec
Q 036258          233 CIYLKVLGLHS  243 (331)
Q Consensus       233 ~~~L~~L~l~~  243 (331)
                      +++|+.|.+.+
T Consensus       175 lknLr~L~l~~  185 (221)
T KOG3864|consen  175 LKNLRRLHLYD  185 (221)
T ss_pred             hhhhHHHHhcC
Confidence            66666665554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	331
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		3e-19
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		4e-19
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-13
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		8e-04

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 92.4 bits (228), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 91/295 (30%), Positives = 131/295 (44%), Gaps = 65/295 (22%)
Query: 72  PNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLR 131
           PN   N   +L++L L++NGF G+IP +LS C++L  L L  N  +G +P ++G+LSKLR
Sbjct: 386 PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 445
Query: 132 SLVL------GHKAH---------------NSLHGHLPSTLSVSLPNLKWLALGMNKLR- 169
            L L      G                   N L G +PS LS +  NL W++L  N+L  
Sbjct: 446 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS-NCTNLNWISLSNNRLTG 504
Query: 170 TIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLT--------TRSST 221
            IP  I     L +L+L  NSFSG +P   G+ R L  LDL  N            +S  
Sbjct: 505 EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK 564
Query: 222 TEWSFLSSLTNCIYLK----------------VLGLHSNQLS----------------GI 249
              +F++     +Y+K                  G+ S QL+                G 
Sbjct: 565 IAANFIAG-KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH 623
Query: 250 LPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVG 304
             P   N    +    +Y+  L G IP+EIG++  L  L L  ND++G+IP  VG
Sbjct: 624 TSPTFDNNGSMMFLDMSYNM-LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG 677

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 92.0 bits (227), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 91/295 (30%), Positives = 131/295 (44%), Gaps = 65/295 (22%)
Query: 72  PNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLR 131
           PN   N   +L++L L++NGF G+IP +LS C++L  L L  N  +G +P ++G+LSKLR
Sbjct: 383 PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 442
Query: 132 SLVL------GHKAH---------------NSLHGHLPSTLSVSLPNLKWLALGMNKLR- 169
            L L      G                   N L G +PS LS +  NL W++L  N+L  
Sbjct: 443 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS-NCTNLNWISLSNNRLTG 501
Query: 170 TIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLT--------TRSST 221
            IP  I     L +L+L  NSFSG +P   G+ R L  LDL  N            +S  
Sbjct: 502 EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK 561
Query: 222 TEWSFLSSLTNCIYLK----------------VLGLHSNQLS----------------GI 249
              +F++     +Y+K                  G+ S QL+                G 
Sbjct: 562 IAANFIAG-KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH 620
Query: 250 LPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVG 304
             P   N    +    +Y+  L G IP+EIG++  L  L L  ND++G+IP  VG
Sbjct: 621 TSPTFDNNGSMMFLDMSYNM-LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG 674

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 120/232 (51%), Gaps = 18/232 (7%)
Query: 72  PNDLCNRLPSLEQLVLRS-NGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKL 130
           P+ L N LP L  L +   N   G IP +++K TQL +L++ H   +G +P+    LS++
Sbjct: 69  PSSLAN-LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD---FLSQI 124
Query: 131 RSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLR-TIPNSITNASEL-TLLELGK 188
           ++LV    ++N+L G LP ++S SLPNL  +    N++   IP+S  + S+L T + + +
Sbjct: 125 KTLVTLDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR 183
Query: 189 NSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSG 248
           N  +G +P TF NL  L+ +DL  N L   +S    S  ++       + + L  N L+ 
Sbjct: 184 NRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNT-------QKIHLAKNSLAF 235
Query: 249 ILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIP 300
            L  +    S +L      +  + G++PQ +  L  L  L +  N+L G IP
Sbjct: 236 DLGKV--GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 9/138 (6%)
Query: 43  YSVLTKNCFYNISSLKMIRXXXX-----XXXXXXPNDLCNRLPSLEQLVLRSNGFFGQIP 97
           Y  L  N  ++IS+LK +                PN + ++L +L++LVL  N       
Sbjct: 67  YLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPD 126
Query: 98  LSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPN 157
               K T L +L+L HN+    LP+  G   KL +L      +N L   LP  +   L  
Sbjct: 127 GVFDKLTNLTYLYLYHNQLQS-LPK--GVFDKLTNLTRLDLDNNQLQS-LPEGVFDKLTQ 182
Query: 158 LKWLALGMNKLRTIPNSI 175
           LK L+L  N+L+++P+ +
Sbjct: 183 LKQLSLNDNQLKSVPDGV 200

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	331
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-63
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-60
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-58
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-55
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-54
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-52
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-52
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-43
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-36
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-20
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-13
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-57
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-29
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-38
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-37
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-31
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-30
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-18
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-17
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-37
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-34
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-33
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-32
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-31
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-31
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-31
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-30
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-27
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-37
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-31
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-28
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-24
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-31
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-30
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-28
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-27
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-26
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-26
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-24
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-22
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-31
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-29
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-28
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-26
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-25
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-25
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-31
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-28
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-29
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-16
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-27
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-26
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-25
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-23
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-18
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-26
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-25
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-24
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-26
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-21
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-25
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-25
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-24
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-23
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-23
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-20
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-18
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-25
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-24
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-23
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-22
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-20
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-24
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-22
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-23
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-19
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-23
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-21
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-19
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-17
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-23
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-23
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-22
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-22
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-21
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-16
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-15
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-22
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-20
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-22
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-21
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-22
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-15
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-21
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-18
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-21
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-16
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-15
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-15
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-19
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-19
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-18
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-18
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-15
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-18
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-18
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-17
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-16
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-17
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-15
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-16
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-16
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-14
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-16
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-16
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-16
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-14
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-14
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	9e-14
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	9e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-10
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	8e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	9e-10
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-08
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-09
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-08
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	7e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-07
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	5e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	7e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	6e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	7e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  214 bits (546), Expect = 1e-63
 Identities = 85/282 (30%), Positives = 128/282 (45%), Gaps = 15/282 (5%)

Query: 53  NISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLE 112
            + SL+ + L+ N  +G +P+ L     +L  L L  N F+G +P     C+ L+ L L 
Sbjct: 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 326

Query: 113 HNKFTGRLP-ENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLR-T 170
            N F+G LP + +  +  L+ L L     N   G LP +L+    +L  L L  N     
Sbjct: 327 SNNFSGELPMDTLLKMRGLKVLDLS---FNEFSGELPESLTNLSASLLTLDLSSNNFSGP 383

Query: 171 IPNSITN--ASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLS 228
           I  ++     + L  L L  N F+G +P T  N   L  L L  NYL+        +  S
Sbjct: 384 ILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS-------GTIPS 436

Query: 229 SLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDL 288
           SL +   L+ L L  N L G +P  +     +L+       +L G IP  + N   L  +
Sbjct: 437 SLGSLSKLRDLKLWLNMLEGEIPQELMYVK-TLETLILDFNDLTGEIPSGLSNCTNLNWI 495

Query: 289 RLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDLCHW 330
            L +N L G IP  +GRL+ L  L L  N+  G+IP++L   
Sbjct: 496 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 537

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  204 bits (522), Expect = 3e-60
 Identities = 90/283 (31%), Positives = 132/283 (46%), Gaps = 16/283 (5%)

Query: 51  FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPL-SLSKCTQLQHL 109
                +L  + LS N   G++P    +    LE L L SN F G++P+ +L K   L+ L
Sbjct: 290 SGACDTLTGLDLSGNHFYGAVPPFFGS-CSLLESLALSSNNFSGELPMDTLLKMRGLKVL 348

Query: 110 WLEHNKFTGRLPENIGNLS-KLRSLVLGHKAHNSLHGHLPSTL-SVSLPNLKWLALGMNK 167
            L  N+F+G LPE++ NLS  L +L L   + N+  G +   L       L+ L L  N 
Sbjct: 349 DLSFNEFSGELPESLTNLSASLLTLDL---SSNNFSGPILPNLCQNPKNTLQELYLQNNG 405

Query: 168 LR-TIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSF 226
               IP +++N SEL  L L  N  SG +P++ G+L  L  L L  N L           
Sbjct: 406 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE-------GEI 458

Query: 227 LSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLI 286
              L     L+ L L  N L+G +P  + N + +L      +  L G IP+ IG L  L 
Sbjct: 459 PQELMYVKTLETLILDFNDLTGEIPSGLSNCT-NLNWISLSNNRLTGEIPKWIGRLENLA 517

Query: 287 DLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDLCH 329
            L+L +N  +G IP  +G  + L  L L  N   G+IP+ +  
Sbjct: 518 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 560

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  198 bits (505), Expect = 8e-58
 Identities = 96/283 (33%), Positives = 130/283 (45%), Gaps = 19/283 (6%)

Query: 51  FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLS-KCTQLQHL 109
               + LK++ +SSN   G +P      L SL+ L L  N F G+IP  LS  C  L  L
Sbjct: 243 ISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGL 299

Query: 110 WLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLR 169
            L  N F G +P   G+ S L SL L   + N+  G LP    + +  LK L L  N+  
Sbjct: 300 DLSGNHFYGAVPPFFGSCSLLESLAL---SSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 356

Query: 170 -TIPNSITNAS-ELTLLELGKNSFSGLVPNTFGNLRFLSL--LDLGNNYLTTRSSTTEWS 225
             +P S+TN S  L  L+L  N+FSG +          +L  L L NN  T         
Sbjct: 357 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT-------GK 409

Query: 226 FLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGL 285
              +L+NC  L  L L  N LSG +P  +G+ S  L+    +   L+G IPQE+  +  L
Sbjct: 410 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS-KLRDLKLWLNMLEGEIPQELMYVKTL 468

Query: 286 IDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDLC 328
             L L  NDL G IP+ +     L  + L  N L G IP  + 
Sbjct: 469 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG 511

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  190 bits (485), Expect = 5e-55
 Identities = 89/281 (31%), Positives = 132/281 (46%), Gaps = 17/281 (6%)

Query: 53  NISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLE 112
           + S+L+ + +S N LSG     +      L+ L + SN F G IP        LQ+L L 
Sbjct: 221 DCSALQHLDISGNKLSGDFSRAIST-CTELKLLNISSNQFVGPIPPL--PLKSLQYLSLA 277

Query: 113 HNKFTGRLPENI-GNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLR-T 170
            NKFTG +P+ + G    L  L L     N  +G +P     S   L+ LAL  N     
Sbjct: 278 ENKFTGEIPDFLSGACDTLTGLDLS---GNHFYGAVPPFFG-SCSLLESLALSSNNFSGE 333

Query: 171 IP-NSITNASELTLLELGKNSFSGLVPNTFGNLRF-LSLLDLGNNYLTTRSSTTEWSFLS 228
           +P +++     L +L+L  N FSG +P +  NL   L  LDL +N  +           +
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS--GPILPNLCQN 391

Query: 229 SLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDL 288
                  L+ L L +N  +G +PP + N S  L   +     L G+IP  +G+L+ L DL
Sbjct: 392 PKNT---LQELYLQNNGFTGKIPPTLSNCS-ELVSLHLSFNYLSGTIPSSLGSLSKLRDL 447

Query: 289 RLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDLCH 329
           +L  N L G IP  +  ++ L+ L L  N+L G IPS L +
Sbjct: 448 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 488

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  187 bits (478), Expect = 4e-54
 Identities = 90/287 (31%), Positives = 134/287 (46%), Gaps = 20/287 (6%)

Query: 49  NCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCT-QLQ 107
             F + S L+ + LSSN+ SG LP D   ++  L+ L L  N F G++P SL+  +  L 
Sbjct: 312 PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLL 371

Query: 108 HLWLEHNKFTGRLPENIGN--LSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGM 165
            L L  N F+G +  N+     + L+ L L    +N   G +P TLS +   L  L L  
Sbjct: 372 TLDLSSNNFSGPILPNLCQNPKNTLQELYLQ---NNGFTGKIPPTLS-NCSELVSLHLSF 427

Query: 166 NKLR-TIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEW 224
           N L  TIP+S+ + S+L  L+L  N   G +P     ++ L  L L  N LT        
Sbjct: 428 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT-------G 480

Query: 225 SFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNG 284
              S L+NC  L  + L +N+L+G +P  IG    +L      +    G+IP E+G+   
Sbjct: 481 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE-NLAILKLSNNSFSGNIPAELGDCRS 539

Query: 285 LIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDLCHWG 331
           LI L L  N  NGTIP  + +        +  N + G     + + G
Sbjct: 540 LIWLDLNTNLFNGTIPAAMFKQSGK----IAANFIAGKRYVYIKNDG 582

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  183 bits (466), Expect = 2e-52
 Identities = 83/280 (29%), Positives = 121/280 (43%), Gaps = 16/280 (5%)

Query: 49  NCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQH 108
           +   ++S L+ ++L  N L G +P +L   + +LE L+L  N   G+IP  LS CT L  
Sbjct: 436 SSLGSLSKLRDLKLWLNMLEGEIPQELMY-VKTLETLILDFNDLTGEIPSGLSNCTNLNW 494

Query: 109 LWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKL 168
           + L +N+ TG +P+ IG L  L  L L +   NS  G++P+ L     +L WL L  N  
Sbjct: 495 ISLSNNRLTGEIPKWIGRLENLAILKLSN---NSFSGNIPAELG-DCRSLIWLDLNTNLF 550

Query: 169 R-TIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFL 227
             TIP ++   S     ++  N  +G       N           N L  +         
Sbjct: 551 NGTIPAAMFKQS----GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGI-----RS 601

Query: 228 SSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLID 287
             L          + S    G   P   N   S+         L G IP+EIG++  L  
Sbjct: 602 EQLNRLSTRNPCNITSRVYGGHTSPTFDNNG-SMMFLDMSYNMLSGYIPKEIGSMPYLFI 660

Query: 288 LRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDL 327
           L L  ND++G+IP  VG L+ L  L L  N L G IP  +
Sbjct: 661 LNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 700

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  182 bits (463), Expect = 6e-52
 Identities = 86/290 (29%), Positives = 123/290 (42%), Gaps = 21/290 (7%)

Query: 45  VLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKC- 103
            L  +    +  LK++ LS N  SG LP  L N   SL  L L SN F G I  +L +  
Sbjct: 333 ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNP 392

Query: 104 -TQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLA 162
              LQ L+L++N FTG++P  + N S+L SL L   + N L G +PS+L  SL  L+ L 
Sbjct: 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHL---SFNYLSGTIPSSLG-SLSKLRDLK 448

Query: 163 LGMNKLR-TIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSST 221
           L +N L   IP  +     L  L L  N  +G +P+   N   L+ + L NN LT     
Sbjct: 449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG---- 504

Query: 222 TEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGN 281
                   +     L +L L +N  SG +P  +G+   SL           G+IP  +  
Sbjct: 505 ---EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR-SLIWLDLNTNLFNGTIPAAMFK 560

Query: 282 LNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGN--NLQGSIPSDLCH 329
            +G     +  N + G     +      +     GN    QG     L  
Sbjct: 561 QSGK----IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR 606

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  156 bits (398), Expect = 5e-43
 Identities = 70/280 (25%), Positives = 112/280 (40%), Gaps = 20/280 (7%)

Query: 49  NCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQH 108
                + +L+ + L  N L+G +P+ L N   +L  + L +N   G+IP  + +   L  
Sbjct: 460 QELMYVKTLETLILDFNDLTGEIPSGLSN-CTNLNWISLSNNRLTGEIPKWIGRLENLAI 518

Query: 109 LWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKL 168
           L L +N F+G +P  +G+   L  L L     N  +G +P+ +       +   +  N +
Sbjct: 519 LKLSNNSFSGNIPAELGDCRSLIWLDL---NTNLFNGTIPAAMF-----KQSGKIAANFI 570

Query: 169 R-TIPNSITNASELTLLELGKN--SFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWS 225
                  I N           N   F G+       L   +  ++ +             
Sbjct: 571 AGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG-------GH 623

Query: 226 FLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGL 285
              +  N   +  L +  N LSG +P  IG+    L        ++ GSIP E+G+L GL
Sbjct: 624 TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP-YLFILNLGHNDISGSIPDEVGDLRGL 682

Query: 286 IDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPS 325
             L L  N L+G IP  +  L  L  + L  NNL G IP 
Sbjct: 683 NILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  136 bits (345), Expect = 7e-36
 Identities = 59/324 (18%), Positives = 108/324 (33%), Gaps = 65/324 (20%)

Query: 16  SLAMTTVKNITTDQSALLAFKAHIADPYSVLTKNCFYNISSLKMIRLSSNSLSGSLPNDL 75
           S   +  +++  +   L++FK  + D                    L   S +     + 
Sbjct: 1   SFQASPSQSLYREIHQLISFKDVLPDK-----------------NLLPDWSSN----KNP 39

Query: 76  CN---------RLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGN 126
           C          ++ S++      N  F  +  SL   T L+ L+L ++   G +      
Sbjct: 40  CTFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKC 98

Query: 127 LSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLEL 186
            + L SL L     NSL G + +                        S+ + S L  L +
Sbjct: 99  SASLTSLDLSR---NSLSGPVTT----------------------LTSLGSCSGLKFLNV 133

Query: 187 GKNSFSGLVP-NTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQ 245
             N+       +    L  L +LDL  N ++  ++   W           LK L +  N+
Sbjct: 134 SSNTLDFPGKVSGGLKLNSLEVLDLSANSISG-ANVVGWVLSDGCGE---LKHLAISGNK 189

Query: 246 LSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGR 305
           +SG +   +     +L+            IP  +G+ + L  L +  N L+G     +  
Sbjct: 190 ISGDVD--VSRCV-NLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAIST 245

Query: 306 LQQLQGLFLFGNNLQGSIPSDLCH 329
             +L+ L +  N   G IP     
Sbjct: 246 CTELKLLNISSNQFVGPIPPLPLK 269

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 90.0 bits (224), Expect = 5e-20
 Identities = 42/171 (24%), Positives = 66/171 (38%), Gaps = 12/171 (7%)

Query: 50  CFYNISSLKMIRLSSN--SLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQ 107
              N    K    + N     G     L   L +     + S  + G    +      + 
Sbjct: 577 YIKNDGMKKECHGAGNLLEFQGIRSEQLNR-LSTRNPCNITSRVYGGHTSPTFDNNGSMM 635

Query: 108 HLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNK 167
            L + +N  +G +P+ IG++  L  L LGH   N + G +P  +   L  L  L L  NK
Sbjct: 636 FLDMSYNMLSGYIPKEIGSMPYLFILNLGH---NDISGSIPDEVG-DLRGLNILDLSSNK 691

Query: 168 LR-TIPNSITNASELTLLELGKNSFSGLVPNT--FGNLRFLSLLDLGNNYL 215
           L   IP +++  + LT ++L  N+ SG +P    F          L N  L
Sbjct: 692 LDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKF--LNNPGL 740

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 69.6 bits (171), Expect = 3e-13
 Identities = 27/134 (20%), Positives = 53/134 (39%), Gaps = 9/134 (6%)

Query: 201 NLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDS 260
               ++ +DL +  L    +    +  SSL +   L+ L L ++ ++G +       + S
Sbjct: 48  RDDKVTSIDLSSKPL----NVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSA-S 101

Query: 261 LQQFYAYDCELKGSIP--QEIGNLNGLIDLRLQDNDLNGTIPTTVG-RLQQLQGLFLFGN 317
           L         L G +     +G+ +GL  L +  N L+     + G +L  L+ L L  N
Sbjct: 102 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 161

Query: 318 NLQGSIPSDLCHWG 331
           ++ G+         
Sbjct: 162 SISGANVVGWVLSD 175

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  186 bits (474), Expect = 4e-57
 Identities = 83/323 (25%), Positives = 139/323 (43%), Gaps = 37/323 (11%)

Query: 27  TDQSALLAFKAHIADPYSV--------LTKNCFY--------NISSLKMIRLSSNSLSGS 70
            D+ ALL  K  + +P ++             +             +  + LS  +L   
Sbjct: 6   QDKQALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKP 65

Query: 71  --LPNDLCNRLPSLEQLVLRS-NGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNL 127
             +P+ L N LP L  L +   N   G IP +++K TQL +L++ H   +G +P+ +  +
Sbjct: 66  YPIPSSLAN-LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI 124

Query: 128 SKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLR-TIPNSITNASEL-TLLE 185
             L +L     ++N+L G LP ++S SLPNL  +    N++   IP+S  + S+L T + 
Sbjct: 125 KTLVTLDF---SYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT 180

Query: 186 LGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQ 245
           + +N  +G +P TF NL  L+ +DL  N L                +    + + L  N 
Sbjct: 181 ISRNRLTGKIPPTFANLN-LAFVDLSRNMLEG-------DASVLFGSDKNTQKIHLAKNS 232

Query: 246 LSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGR 305
           L+  L  + G    +L      +  + G++PQ +  L  L  L +  N+L G IP   G 
Sbjct: 233 LAFDLGKV-GLSK-NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GN 289

Query: 306 LQQLQGLFLFGNNLQGSIPSDLC 328
           LQ+        N      P   C
Sbjct: 290 LQRFDVSAYANNKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  112 bits (282), Expect = 7e-29
 Identities = 34/163 (20%), Positives = 65/163 (39%), Gaps = 12/163 (7%)

Query: 171 IPNSITNASELTLLELGKNSFSG--LVPNTFGNLRFLSLLDLGN-NYLTTRSSTTEWSFL 227
           + ++ T    +  L+L   +      +P++  NL +L+ L +G  N L            
Sbjct: 42  LCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG-------PIP 94

Query: 228 SSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLID 287
            ++     L  L +    +SG +P  +     +L         L G++P  I +L  L+ 
Sbjct: 95  PAIAKLTQLHYLYITHTNVSGAIPDFLSQIK-TLVTLDFSYNALSGTLPPSISSLPNLVG 153

Query: 288 LRLQDNDLNGTIPTTVGRLQQL-QGLFLFGNNLQGSIPSDLCH 329
           +    N ++G IP + G   +L   + +  N L G IP    +
Sbjct: 154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN 196

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  143 bits (363), Expect = 1e-38
 Identities = 45/291 (15%), Positives = 93/291 (31%), Gaps = 22/291 (7%)

Query: 53  NISSLKMIRLSSNSL-SGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWL 111
               +++I +  N+L +  +   L   +  L  L    N   G++P +     +L  L L
Sbjct: 303 VGEKIQIIYIGYNNLKTFPVETSLQK-MKKLGMLECLYNQLEGKLP-AFGSEIKLASLNL 360

Query: 112 EHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLR-- 169
            +N+ T       G   ++ +L   H   N L        + S+  +  +    N++   
Sbjct: 361 AYNQITEIPANFCGFTEQVENLSFAH---NKLKYIPNIFDAKSVSVMSAIDFSYNEIGSV 417

Query: 170 ------TIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTE 223
                  +  +      ++ + L  N  S      F     LS ++L  N LT     + 
Sbjct: 418 DGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSL 477

Query: 224 WSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLN 283
                +  N   L  + L  N+L+ +           L              P +  N +
Sbjct: 478 KDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSS 536

Query: 284 GLIDLRLQD------NDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDLC 328
            L    +++      N      P  +     L  L +  N+++  +   + 
Sbjct: 537 TLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT 586

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  139 bits (351), Expect = 6e-37
 Identities = 36/322 (11%), Positives = 87/322 (27%), Gaps = 59/322 (18%)

Query: 51  FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLW 110
              ++ L+   + ++               + E         +    L       L  + 
Sbjct: 202 VMRLTKLRQFYMGNSPFVAENI------CEAWENENSEYAQQYKTEDLKWDNLKDLTDVE 255

Query: 111 LEHNKFTGRLPENIGNLSKLRSLVLGHK-----------------------------AHN 141
           + +     +LP  +  L +++ + +                                 +N
Sbjct: 256 VYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN 315

Query: 142 SL-HGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFG 200
           +L    + ++L   +  L  L    N+L     +  +  +L  L L  N  + +  N  G
Sbjct: 316 NLKTFPVETSLQ-KMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCG 374

Query: 201 NLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGI-------LPPL 253
               +  L   +N L    +  +   +S ++       +    N++  +       L P 
Sbjct: 375 FTEQVENLSFAHNKLKYIPNIFDAKSVSVMS------AIDFSYNEIGSVDGKNFDPLDPT 428

Query: 254 IGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNG-------TIPTTVGRL 306
                 ++      + ++     +     + L  + L  N L                  
Sbjct: 429 PFKGI-NVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNT 487

Query: 307 QQLQGLFLFGNNLQGSIPSDLC 328
             L  + L  N L   +  D  
Sbjct: 488 YLLTSIDLRFNKLT-KLSDDFR 508

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  121 bits (306), Expect = 8e-31
 Identities = 50/288 (17%), Positives = 93/288 (32%), Gaps = 30/288 (10%)

Query: 51  FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIP--LSLSKCTQLQH 108
           F +   L  + L+ N ++  +P + C     +E L    N     IP        + +  
Sbjct: 349 FGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAHN-KLKYIPNIFDAKSVSVMSA 406

Query: 109 LWLEHNKFTG-------RLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWL 161
           +   +N+           L         + S+ L +   N +        S +   L  +
Sbjct: 407 IDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSN---NQISKFPKELFS-TGSPLSSI 462

Query: 162 ALGMNKLRTIP--------NSITNASELTLLELGKNSFSGLVPN-TFGNLRFLSLLDLGN 212
            L  N L  IP         +  N   LT ++L  N  + L  +     L +L  +DL  
Sbjct: 463 NLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSY 522

Query: 213 NYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELK 272
           N  +   +  +    S+L             N+     P  I     SL Q      +++
Sbjct: 523 NSFSKFPT--QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCP-SLTQLQIGSNDIR 579

Query: 273 GSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQ 320
             + ++I     +  L ++DN       + V    +     LF +  Q
Sbjct: 580 -KVNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  119 bits (300), Expect = 4e-30
 Identities = 39/287 (13%), Positives = 86/287 (29%), Gaps = 26/287 (9%)

Query: 63  SSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTG-RLP 121
               + G+ P    N    +  L L   G  G++P ++ + T+L+ L L  +        
Sbjct: 64  KELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERL 123

Query: 122 ENIGNLSKLRSLVLGHKAHNSLHGHLPSTLS-VSLPNLKWLALGMNKLR-TIPNSITNAS 179
                +S   S     K                   +L    +  +  + +I  S     
Sbjct: 124 FGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITL 183

Query: 180 ELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLS----------- 228
           + T +    N+ + +       L  L    +GN+     +    W   +           
Sbjct: 184 KDTQIGQLSNNITFV-SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED 242

Query: 229 -SLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELK--------GSIPQEI 279
               N   L  + +++      LP  +      +Q                       + 
Sbjct: 243 LKWDNLKDLTDVEVYNCPNLTKLPTFLKALP-EMQLINVACNRGISGEQLKDDWQALADA 301

Query: 280 GNLNGLIDLRLQDNDL-NGTIPTTVGRLQQLQGLFLFGNNLQGSIPS 325
                +  + +  N+L    + T++ ++++L  L    N L+G +P+
Sbjct: 302 PVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA 348

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 85.5 bits (212), Expect = 1e-18
 Identities = 43/213 (20%), Positives = 72/213 (33%), Gaps = 33/213 (15%)

Query: 53  NISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGF-------FGQIPLSLSKCTQ 105
              ++  I LS+N +S   P +L +    L  + L  N               +      
Sbjct: 431 KGINVSSINLSNNQISK-FPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYL 489

Query: 106 LQHLWLEHNKFTGRLPENI--GNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLAL 163
           L  + L  NK T  L ++     L  L  + L   ++NS     P+    +   LK   +
Sbjct: 490 LTSIDLRFNKLTK-LSDDFRATTLPYLVGIDL---SYNSFSK-FPTQPL-NSSTLKGFGI 543

Query: 164 GMNK-------LRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLT 216
              +       LR  P  IT    LT L++G N    +      N+     LD+ +N   
Sbjct: 544 RNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNISV---LDIKDNPNI 600

Query: 217 TRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGI 249
           +         LS +   I   +  L  ++   I
Sbjct: 601 SID-------LSYVCPYIEAGMYMLFYDKTQDI 626

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 80.1 bits (198), Expect = 8e-17
 Identities = 22/155 (14%), Positives = 46/155 (29%), Gaps = 5/155 (3%)

Query: 174 SITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNC 233
           S+ +   +T L L     SG VP+  G L  L +L LG++                ++  
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERL---FGPKGISAN 132

Query: 234 IYLKVLGLHSNQLSGILPPLIGNFS-DSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQD 292
           +  +                        L +        + SI +          +    
Sbjct: 133 MSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLS 192

Query: 293 NDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDL 327
           N++   +   V RL +L+  ++  +        + 
Sbjct: 193 NNI-TFVSKAVMRLTKLRQFYMGNSPFVAENICEA 226

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 62.0 bits (151), Expect = 8e-11
 Identities = 24/129 (18%), Positives = 36/129 (27%), Gaps = 13/129 (10%)

Query: 50  CFYNISSLKMIRLSSNSLSGSLPNDLCN-----RLPSLEQLVLRSNGFFGQIPLSLSKCT 104
               +  L  I LS NS S   P    N           Q   + N    + P  ++ C 
Sbjct: 508 RATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCP 566

Query: 105 QLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALG 164
            L  L +  N     + E I     +  L +     N       S +           L 
Sbjct: 567 SLTQLQIGSNDIRK-VNEKI--TPNISVLDI---KDNPNISIDLSYVC-PYIEAGMYMLF 619

Query: 165 MNKLRTIPN 173
            +K + I  
Sbjct: 620 YDKTQDIRG 628

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  140 bits (356), Expect = 2e-37
 Identities = 66/285 (23%), Positives = 98/285 (34%), Gaps = 13/285 (4%)

Query: 44  SVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKC 103
             L    F   S L  + +  N++S  L  +LC +LP L+ L L+ N        + + C
Sbjct: 38  RRLPAANFTRYSQLTSLDVGFNTISK-LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFC 96

Query: 104 TQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLAL 163
           T L  L L  N               L +L L    HN L      T    L NL+ L L
Sbjct: 97  TNLTELHLMSNSIQKIKNNPFVKQKNLITLDLS---HNGLSSTKLGTQV-QLENLQELLL 152

Query: 164 GMNKLRTIPN---SITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSS 220
             NK++ + +    I   S L  LEL  N      P  F  +  L  L L N  L    +
Sbjct: 153 SNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLT 212

Query: 221 TTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSD-SLQQFYAYDCELKGSIPQEI 279
                 L        ++ L L ++QLS             +L         L        
Sbjct: 213 EK----LCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSF 268

Query: 280 GNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIP 324
             L  L    L+ N++      ++  L  ++ L L  +  + SI 
Sbjct: 269 AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSIS 313

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  130 bits (330), Expect = 5e-34
 Identities = 59/282 (20%), Positives = 92/282 (32%), Gaps = 19/282 (6%)

Query: 55  SSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHN 114
           +++ ++ L+ N L      +       L  L +  N      P    K   L+ L L+HN
Sbjct: 25  TNITVLNLTHNQLRRLPAANFTR-YSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83

Query: 115 KFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTI-PN 173
           + +    +     + L  L L     NS+     +       NL  L L  N L +    
Sbjct: 84  ELSQLSDKTFAFCTNLTELHL---MSNSIQKIKNNPFV-KQKNLITLDLSHNGLSSTKLG 139

Query: 174 SITNASELTLLELGKNSFSGLVPNTFGNLRFLSL--LDLGNNYLTTRSSTTEWSFLSSLT 231
           +      L  L L  N    L           SL  L+L +N +   S            
Sbjct: 140 TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP-------GCFH 192

Query: 232 NCIYLKVLGLHSNQLSGILPPLIGNFSD--SLQQFYAYDCELKGSIPQEIGNLNG--LID 287
               L  L L++ QL   L   +       S++     + +L  +       L    L  
Sbjct: 193 AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTM 252

Query: 288 LRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDLCH 329
           L L  N+LN     +   L QL+  FL  NN+Q      L  
Sbjct: 253 LDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHG 294

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  129 bits (327), Expect = 1e-33
 Identities = 61/291 (20%), Positives = 103/291 (35%), Gaps = 14/291 (4%)

Query: 44  SVLTKNCFYNISSLKMIRLSSNSLS-GSLPNDLCNRLP--SLEQLVLRSNGFFGQIPLSL 100
             +  N F  + +LK + LS++  S  +L N+    L    L  L L  N        + 
Sbjct: 342 PGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAF 401

Query: 101 SKCTQLQHLWLEHNKFTGRLPEN-IGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLK 159
           S    L+ L L  N+    L       L  +  + L   ++N       ++ +  +P+L+
Sbjct: 402 SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYL---SYNKYLQLTRNSFA-LVPSLQ 457

Query: 160 WLALGMNKLRTI---PNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLT 216
            L L    L+ +   P+       LT+L+L  N+ + +  +    L  L +LDL +N L 
Sbjct: 458 RLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 517

Query: 217 T-RSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSI 275
                      +  L    +L +L L SN    I   +  +    L+        L    
Sbjct: 518 RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLF-ELKIIDLGLNNLNTLP 576

Query: 276 PQEIGNLNGLIDLRLQDNDLNGTIPTTVGR-LQQLQGLFLFGNNLQGSIPS 325
                N   L  L LQ N +        G   + L  L +  N    +  S
Sbjct: 577 ASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  127 bits (320), Expect = 1e-32
 Identities = 67/280 (23%), Positives = 101/280 (36%), Gaps = 20/280 (7%)

Query: 56  SLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNK 115
           S ++   S   L+  +P+DL     ++  L L  N        + ++ +QL  L +  N 
Sbjct: 5   SHEVADCSHLKLT-QVPDDL---PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60

Query: 116 FTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTI-PNS 174
            +   PE    L  L+ L L    HN L      T +    NL  L L  N ++ I  N 
Sbjct: 61  ISKLEPELCQKLPMLKVLNL---QHNELSQLSDKTFA-FCTNLTELHLMSNSIQKIKNNP 116

Query: 175 ITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCI 234
                 L  L+L  N  S     T   L  L  L L NN +    S         +    
Sbjct: 117 FVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEE-----LDIFANS 171

Query: 235 YLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIG---NLNGLIDLRLQ 291
            LK L L SNQ+    P         L   +  + +L  S+ +++        + +L L 
Sbjct: 172 SLKKLELSSNQIKEFSPGCFHAIG-RLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLS 230

Query: 292 DNDLNGTIPTTVGRLQ--QLQGLFLFGNNLQGSIPSDLCH 329
           ++ L+ T  TT   L+   L  L L  NNL          
Sbjct: 231 NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW 270

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  124 bits (313), Expect = 1e-31
 Identities = 60/298 (20%), Positives = 94/298 (31%), Gaps = 28/298 (9%)

Query: 44  SVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKC 103
           S L+   F   ++L  + L SNS+     N       +L  L L  NG       +  + 
Sbjct: 86  SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVK-QKNLITLDLSHNGLSSTKLGTQVQL 144

Query: 104 TQLQHLWLEHNKFTGRLPENIG--NLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWL 161
             LQ L L +NK      E +     S L+ L L   + N +    P     ++  L  L
Sbjct: 145 ENLQELLLSNNKIQALKSEELDIFANSSLKKLEL---SSNQIKEFSPGCFH-AIGRLFGL 200

Query: 162 ALGMNKLRTIPNSIT----NASELTLLELGKNSFSGLVPNTFGNLRFLSL--LDLGNNYL 215
            L   +L              + +  L L  +  S     TF  L++ +L  LDL  N L
Sbjct: 201 FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL 260

Query: 216 TTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGN--------FSDSLQQFYAY 267
               +        S      L+   L  N +  +    +             S  +    
Sbjct: 261 NVVGN-------DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSIS 313

Query: 268 DCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPS 325
              L          L  L  L ++DND+ G        L  L+ L L  +       +
Sbjct: 314 LASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLT 371

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  123 bits (310), Expect = 2e-31
 Identities = 59/300 (19%), Positives = 99/300 (33%), Gaps = 24/300 (8%)

Query: 44  SVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKC 103
           S L       +  LK++ L  N LS            +L +L L SN           K 
Sbjct: 62  SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAF-CTNLTELHLMSNSIQKIKNNPFVKQ 120

Query: 104 TQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSV-SLPNLKWLA 162
             L  L L HN  +         L  L+ L+L   ++N +       L + +  +LK L 
Sbjct: 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLL---SNNKIQALKSEELDIFANSSLKKLE 177

Query: 163 LGMNKLRTI-PNSITNASELTLLELGKNSFSGLVPNTFG---NLRFLSLLDLGNNYLTTR 218
           L  N+++   P        L  L L        +            +  L L N+ L+T 
Sbjct: 178 LSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTT 237

Query: 219 SSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQE 278
           S+TT       L     L +L L  N L+ +           L+ F+     ++      
Sbjct: 238 SNTT----FLGL-KWTNLTMLDLSYNNLNVVGNDSFAWLP-QLEYFFLEYNNIQHLFSHS 291

Query: 279 IGNLNGLIDLRLQDN---------DLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDLCH 329
           +  L  +  L L+ +          L      +   L+ L+ L +  N++ G   +    
Sbjct: 292 LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG 351

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  122 bits (309), Expect = 3e-31
 Identities = 65/308 (21%), Positives = 109/308 (35%), Gaps = 46/308 (14%)

Query: 51  FYNISSLKMIRLSSNSLSGSLPNDLCN-RLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHL 109
               +S++ + LS++ LS +        +  +L  L L  N        S +   QL++ 
Sbjct: 218 ELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYF 277

Query: 110 WLEHNKFTGRLPENIGNLSKLRSLVL------GHKAHNSLHGHLPSTLSVSLPNLKWLAL 163
           +LE+N        ++  L  +R L L         +  SL      +    L  L+ L +
Sbjct: 278 FLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQ-WLKCLEHLNM 336

Query: 164 GMNKLRTIPNSI-----------------------------TNASELTLLELGKNSFSGL 194
             N +  I +++                                S L +L L KN  S +
Sbjct: 337 EDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKI 396

Query: 195 VPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLI 254
             + F  L  L +LDLG N +    +  EW  L +      +  + L  N+   +     
Sbjct: 397 ESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLEN------IFEIYLSYNKYLQLTRNSF 450

Query: 255 GNFSDSLQQFYAYDCELKG--SIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGL 312
                SLQ+       LK   S P     L  L  L L +N++       +  L++L+ L
Sbjct: 451 ALVP-SLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEIL 509

Query: 313 FLFGNNLQ 320
            L  NNL 
Sbjct: 510 DLQHNNLA 517

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  118 bits (298), Expect = 9e-30
 Identities = 57/308 (18%), Positives = 100/308 (32%), Gaps = 32/308 (10%)

Query: 44  SVLTKNCFYNISSLKMIRLSSNSLSGSL--------PNDLCNRLPSLEQLVLRSNGFFGQ 95
             L  +  + + +++ + L  +    S+         +     L  LE L +  N   G 
Sbjct: 285 QHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI 344

Query: 96  IPLSLSKCTQLQHLWLEHNKFTGRLPENIG----NLSKLRSLVLGHKAHNSLHGHLPSTL 151
                +    L++L L ++  + R   N        S L  L L     N +        
Sbjct: 345 KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTK---NKISKIESDAF 401

Query: 152 SVSLPNLKWLALGMNKLRTI--PNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLD 209
           S  L +L+ L LG+N++              +  + L  N +  L  N+F  +  L  L 
Sbjct: 402 S-WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLM 460

Query: 210 LGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDC 269
           L    L         S  S       L +L L +N ++ I   ++      L+       
Sbjct: 461 LRRVALKN-----VDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE-KLEILDLQHN 514

Query: 270 EL--------KGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQG 321
            L         G     +  L+ L  L L+ N  +         L +L+ + L  NNL  
Sbjct: 515 NLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNT 574

Query: 322 SIPSDLCH 329
              S   +
Sbjct: 575 LPASVFNN 582

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  110 bits (276), Expect = 8e-27
 Identities = 52/267 (19%), Positives = 93/267 (34%), Gaps = 22/267 (8%)

Query: 44  SVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKC 103
           S +  + F  +  L+++ L  N +   L       L ++ ++ L  N +      S +  
Sbjct: 394 SKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALV 453

Query: 104 TQLQHLWLEHNKFTG--RLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWL 161
             LQ L L           P     L  L  L L   ++N++       L   L  L+ L
Sbjct: 454 PSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDL---SNNNIANINDDMLE-GLEKLEIL 509

Query: 162 ALGMNKLRTI---------PNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGN 212
            L  N L  +            +   S L +L L  N F  +    F +L  L ++DLG 
Sbjct: 510 DLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGL 569

Query: 213 NYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELK 272
           N L T  +    S  ++  +   LK L L  N ++ +   + G    +L +         
Sbjct: 570 NNLNTLPA----SVFNNQVS---LKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622

Query: 273 GSIPQEIGNLNGLIDLRLQDNDLNGTI 299
            +       +N + +      +L+   
Sbjct: 623 CTCESIAWFVNWINETHTNIPELSSHY 649

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  140 bits (355), Expect = 3e-37
 Identities = 45/295 (15%), Positives = 97/295 (32%), Gaps = 23/295 (7%)

Query: 49  NCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQH 108
           +       +++  +  N+L     +    ++  L  L    N     +  +     +L  
Sbjct: 542 DDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN-KVRHLE-AFGTNVKLTD 599

Query: 109 LWLEHNKFTGRLPENIG-NLSKLRSLVLGHKAHNSLHGHLPSTLSV-SLPNLKWLALGMN 166
           L L++N+    +PE+      ++  L   H   N L   +P+  +  S+  +  +    N
Sbjct: 600 LKLDYNQIEE-IPEDFCAFTDQVEGLGFSH---NKLKY-IPNIFNAKSVYVMGSVDFSYN 654

Query: 167 KLRTIPNSIT------NASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSS 220
           K+ +   +I+           + + L  N         F     +S + L NN +T+   
Sbjct: 655 KIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPE 714

Query: 221 TTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIG 280
            +      +  N   L  + L  N+L+ +           L            S P +  
Sbjct: 715 NSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPL 773

Query: 281 NLNGLIDLRLQ------DNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDLCH 329
           N + L    ++       N +    PT +     L  L +  N+++  +   L  
Sbjct: 774 NSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKLTP 827

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  123 bits (311), Expect = 2e-31
 Identities = 42/285 (14%), Positives = 86/285 (30%), Gaps = 43/285 (15%)

Query: 51  FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLW 110
              ++ L++I  +++  +              E         +    LS S    L  + 
Sbjct: 444 IQRLTKLQIIYFANSPFTYDNI------AVDWEDANSDYAKQYENEELSWSNLKDLTDVE 497

Query: 111 LEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRT 170
           L +     +LP+ + +L +L+SL +   A N                    A        
Sbjct: 498 LYNCPNMTQLPDFLYDLPELQSLNI---ACNRGIS---------------AAQLKADWTR 539

Query: 171 IPNSITNASELTLLELGKNSFSGL-VPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSS 229
           + +      ++ +  +G N+        +   +  L LLD  +N +           L +
Sbjct: 540 LADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH---------LEA 590

Query: 230 LTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQ--EIGNLNGLID 287
               + L  L L  NQ+  I P     F+D ++       +LK  IP      ++  +  
Sbjct: 591 FGTNVKLTDLKLDYNQIEEI-PEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGS 648

Query: 288 LRLQDNDLNGTIPTT-----VGRLQQLQGLFLFGNNLQGSIPSDL 327
           +    N +              +      + L  N +Q       
Sbjct: 649 VDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELF 693

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  114 bits (287), Expect = 3e-28
 Identities = 42/317 (13%), Positives = 85/317 (26%), Gaps = 37/317 (11%)

Query: 27  TDQSALLAFKAHIADP---YSVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLE 83
            D  AL A    +      Y   T N   +  +          + G  P    +    + 
Sbjct: 269 KDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNF--NKELDMWGDQPGVDLDNNGRVT 326

Query: 84  QLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSL 143
            L L   G  G++P ++ + T+L+ L    +  T              +  +  +  + +
Sbjct: 327 GLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEEL---TPDMSEERKHRI 383

Query: 144 HGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGL------VPN 197
             H           L    L  + +   P  +    + + + L       L      +  
Sbjct: 384 RMHYKKMFLDYDQRLNLSDLLQDAINRNPE-MKPIKKDSRISLKDTQIGNLTNRITFISK 442

Query: 198 TFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNF 257
               L  L ++   N+  T                 +  +       +          N 
Sbjct: 443 AIQRLTKLQIIYFANSPFT------------YDNIAVDWEDANSDYAKQYENEELSWSNL 490

Query: 258 SDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNG---------TIPTTVGRLQQ 308
              L     Y+C     +P  + +L  L  L +  N              +        +
Sbjct: 491 K-DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPK 549

Query: 309 LQGLFLFGNNLQGSIPS 325
           +Q  ++  NNL+    S
Sbjct: 550 IQIFYMGYNNLEEFPAS 566

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  103 bits (257), Expect = 2e-24
 Identities = 37/288 (12%), Positives = 81/288 (28%), Gaps = 42/288 (14%)

Query: 44  SVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIP-----L 98
             + ++       ++ +  S N L           +  +  +    N    +       +
Sbjct: 608 EEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM 667

Query: 99  SLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGH----KAHNSLHGHLPSTLSVS 154
              K      + L +N+      E     S + +++L +        +           +
Sbjct: 668 DDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYK-N 726

Query: 155 LPNLKWLALGMNKLRTIPNSI--TNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGN 212
              L  + L  NKL ++ +    T    L+ +++  N FS   P    N   L    + +
Sbjct: 727 TYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSF-PTQPLNSSQLKAFGIRH 785

Query: 213 NYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELK 272
                                          N++    P  I     SL Q      +++
Sbjct: 786 Q-------------------------RDAEGNRILRQWPTGITTCP-SLIQLQIGSNDIR 819

Query: 273 GSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQ 320
             + +++     L  L + DN       T+V    +     L  +  Q
Sbjct: 820 -KVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 81.8 bits (202), Expect = 3e-17
 Identities = 34/240 (14%), Positives = 64/240 (26%), Gaps = 51/240 (21%)

Query: 42  PYSVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGF-------FG 94
             ++      Y   +   + LS N +    P +L      +  ++L +N           
Sbjct: 660 GRNISCSMDDYKGINASTVTLSYNEIQK-FPTELFATGSPISTIILSNNLMTSIPENSLK 718

Query: 95  QIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVS 154
               +      L  + L  NK T  L ++                              +
Sbjct: 719 PKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRAT--------------------------T 751

Query: 155 LPNLKWLALGMNKLRTIPNSITNASELTLLEL------GKNSFSGLVPNTFGNLRFLSLL 208
           LP L  + +  N   + P    N+S+L    +        N      P        L  L
Sbjct: 752 LPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQL 811

Query: 209 DLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYD 268
            +G+N +              L       +L +  N    I    +  + ++      YD
Sbjct: 812 QIGSNDIRKVDE----KLTPQLY------ILDIADNPNISIDVTSVCPYIEAGMYVLLYD 861

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 71.8 bits (176), Expect = 6e-14
 Identities = 32/172 (18%), Positives = 53/172 (30%), Gaps = 15/172 (8%)

Query: 38  HIADPYSVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIP 97
            I +         + N   L  I L  N L+    +     LP L  + +  N  F   P
Sbjct: 711 SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYN-CFSSFP 769

Query: 98  LSLSKCTQLQHLWLEH------NKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTL 151
                 +QL+   + H      N+   + P  I     L  L +G    N +   +   L
Sbjct: 770 TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIG---SNDI-RKVDEKL 825

Query: 152 SVSLPNLKWLALGMNKLRTIP-NSITNASELTLLELGKNSFSGLVPNTFGNL 202
               P L  L +  N   +I   S+    E  +  L  +    +       +
Sbjct: 826 ---TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALGI 874

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 69.9 bits (171), Expect = 2e-13
 Identities = 36/255 (14%), Positives = 68/255 (26%), Gaps = 45/255 (17%)

Query: 119 RLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNK---LRTIPNSI 175
           +L E    +   ++L    +A +  +    S    +  +                    +
Sbjct: 260 QLKETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDL 319

Query: 176 TNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIY 235
            N   +T L L      G VP+  G L  L +L  G +  T          L+   +   
Sbjct: 320 DNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEER 379

Query: 236 LKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKG---------------------- 273
              + +H  ++       + N SD LQ     + E+K                       
Sbjct: 380 KHRIRMHYKKMFLDYDQRL-NLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRIT 438

Query: 274 SIPQEIGNLNGLIDLRLQDNDLNGTI-------------------PTTVGRLQQLQGLFL 314
            I + I  L  L  +   ++                           +   L+ L  + L
Sbjct: 439 FISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVEL 498

Query: 315 FGNNLQGSIPSDLCH 329
           +       +P  L  
Sbjct: 499 YNCPNMTQLPDFLYD 513

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  122 bits (309), Expect = 3e-31
 Identities = 65/281 (23%), Positives = 95/281 (33%), Gaps = 18/281 (6%)

Query: 55  SSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHN 114
            S++ I L  +       N        L++L L +     ++P  L   + L+ L L  N
Sbjct: 254 MSVESINLQKHYFFNISSNTFHC-FSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSAN 311

Query: 115 KFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIP-- 172
           KF      +  N   L  L +     N+    L +    +L NL+ L L  + + T    
Sbjct: 312 KFENLCQISASNFPSLTHLSI---KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCC 368

Query: 173 -NSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLT 231
              + N S L  L L  N    L    F     L LLDL    L  + +    S   +L 
Sbjct: 369 NLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA---QSPFQNLH 425

Query: 232 NCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLR-- 289
               LKVL L  + L      L      +LQ              Q+  +L  L  L   
Sbjct: 426 L---LKVLNLSHSLLDISSEQLFDGLP-ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEIL 481

Query: 290 -LQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDLCH 329
            L   DL+         L+ +  + L  N L  S    L H
Sbjct: 482 VLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH 522

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  120 bits (302), Expect = 2e-30
 Identities = 66/290 (22%), Positives = 114/290 (39%), Gaps = 19/290 (6%)

Query: 44  SVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKC 103
             ++ N F+  S L+ + L++  LS  LP+ L   L +L++LVL +N F     +S S  
Sbjct: 267 FNISSNTFHCFSGLQELDLTATHLS-ELPSGLVG-LSTLKKLVLSANKFENLCQISASNF 324

Query: 104 TQLQHLWLEHNKFTGRLPEN-IGNLSKLRSLVLGHKAHNSLHG-HLPSTLSVSLPNLKWL 161
             L HL ++ N     L    + NL  LR L L H   + +      +    +L +L+ L
Sbjct: 325 PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSH---DDIETSDCCNLQLRNLSHLQSL 381

Query: 162 ALGMNKLRTI-PNSITNASELTLLELGKNSFSGLVPNT-FGNLRFLSLLDLGNNYLTTRS 219
            L  N+  ++   +     +L LL+L           + F NL  L +L+L ++ L    
Sbjct: 382 NLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI-- 439

Query: 220 STTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSD--SLQQFYAYDCELKGSIPQ 277
             +       L     L+ L L  N           +      L+      C+L      
Sbjct: 440 --SSEQLFDGLPA---LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH 494

Query: 278 EIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDL 327
              +L  +  + L  N L  +    +  L+ +  L L  N++   +PS L
Sbjct: 495 AFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLL 543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  115 bits (290), Expect = 1e-28
 Identities = 48/287 (16%), Positives = 88/287 (30%), Gaps = 16/287 (5%)

Query: 44  SVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKC 103
             + ++ F +   L  + L++N L   +     +   +L+ L     G      + L   
Sbjct: 70  YWIHEDTFQSQHRLDTLVLTANPLI-FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQ 128

Query: 104 TQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKW--L 161
             L+ L+L  N  +           KL+ L      +N++H      +S SL       L
Sbjct: 129 KTLESLYLGSNHISSIKLPKGFPTEKLKVLDF---QNNAIHYLSKEDMS-SLQQATNLSL 184

Query: 162 ALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSL--LDLGNNYLTTRS 219
            L  N +  I     +++    L  G      ++     N    SL      +      S
Sbjct: 185 NLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDIS 244

Query: 220 STTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEI 279
                           ++ + L  +    I       FS  LQ+       L   +P  +
Sbjct: 245 PAVFEGLCEM-----SVESINLQKHYFFNISSNTFHCFS-GLQELDLTATHLS-ELPSGL 297

Query: 280 GNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSD 326
             L+ L  L L  N        +      L  L + GN  +  + + 
Sbjct: 298 VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTG 344

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  110 bits (277), Expect = 4e-27
 Identities = 58/285 (20%), Positives = 86/285 (30%), Gaps = 20/285 (7%)

Query: 51  FYNISSLKMIRLSSNSLSGSLPNDLCN-RLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHL 109
              I SL +            P         S+E + L+ + FF     +    + LQ L
Sbjct: 224 NSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQEL 283

Query: 110 WLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLR 169
            L     +  LP  +  LS L+ LVL     N        + S + P+L  L++  N  R
Sbjct: 284 DLTATHLS-ELPSGLVGLSTLKKLVLSA---NKFENLCQISAS-NFPSLTHLSIKGNTKR 338

Query: 170 T--IPNSITNASELTLLELGKN--SFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWS 225
                  + N   L  L+L  +    S        NL  L  L+L  N   +  +   + 
Sbjct: 339 LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA-FK 397

Query: 226 FLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGL 285
               L       +L L   +L              L+        L  S  Q    L  L
Sbjct: 398 ECPQLE------LLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL 451

Query: 286 IDLRLQDNDLNGTIPTTVG---RLQQLQGLFLFGNNLQGSIPSDL 327
             L LQ N               L +L+ L L   +L        
Sbjct: 452 QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF 496

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  107 bits (269), Expect = 5e-26
 Identities = 53/288 (18%), Positives = 92/288 (31%), Gaps = 16/288 (5%)

Query: 44  SVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKC 103
             +    F  + +L  + L+   +   +  D       L+ LVL +N        +LS  
Sbjct: 46  PTIQNTTFSRLINLTFLDLTRCQIY-WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGP 104

Query: 104 TQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLAL 163
             L+HL+      +      + N   L SL L     N +              LK L  
Sbjct: 105 KALKHLFFIQTGISSIDFIPLHNQKTLESLYL---GSNHISSIKLPKGF-PTEKLKVLDF 160

Query: 164 GMNKLRTI-PNSITNASELTLLEL--GKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSS 220
             N +  +    +++  + T L L    N  +G+ P  F +  F SL   G   L     
Sbjct: 161 QNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFK 220

Query: 221 TTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSD-SLQQFYAYDCELKGSIPQEI 279
             + S + S      L +          I P +     + S++                 
Sbjct: 221 GLKNSTIQS------LWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTF 274

Query: 280 GNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDL 327
              +GL +L L    L+  +P+ +  L  L+ L L  N  +       
Sbjct: 275 HCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISA 321

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  107 bits (268), Expect = 8e-26
 Identities = 57/328 (17%), Positives = 91/328 (27%), Gaps = 48/328 (14%)

Query: 44  SVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNG-FFGQIPLSLSK 102
           S +     +    LK++   +N++      D+ + L     L L  NG     I      
Sbjct: 142 SSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSS-LQQATNLSLNLNGNDIAGIEPGAFD 200

Query: 103 CTQLQHLWLEHNKFTGRLPENIGN--LSKLRSLVLGHKAHNSLHGHLPSTLSVS------ 154
               Q L     +    + + + N  +  L            +   +   L         
Sbjct: 201 SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESIN 260

Query: 155 ----------------LPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNT 198
                              L+ L L    L  +P+ +   S L  L L  N F  L   +
Sbjct: 261 LQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQIS 320

Query: 199 FGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLT--------------------NCIYLKV 238
             N   L+ L +  N       T     L +L                     N  +L+ 
Sbjct: 321 ASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQS 380

Query: 239 LGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEI-GNLNGLIDLRLQDNDLNG 297
           L L  N+   +           L+        LK    Q    NL+ L  L L  + L+ 
Sbjct: 381 LNLSYNEPLSLKTEAFKECP-QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI 439

Query: 298 TIPTTVGRLQQLQGLFLFGNNLQGSIPS 325
           +       L  LQ L L GN+       
Sbjct: 440 SSEQLFDGLPALQHLNLQGNHFPKGNIQ 467

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  103 bits (258), Expect = 2e-24
 Identities = 54/302 (17%), Positives = 92/302 (30%), Gaps = 38/302 (12%)

Query: 44  SVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSN--GFFGQIPLSLS 101
             L +    N  SL  + +  N+    L       L +L +L L  +         L L 
Sbjct: 314 ENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLR 373

Query: 102 KCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWL 161
             + LQ L L +N+      E      +L  L L   A   L      +   +L  LK L
Sbjct: 374 NLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDL---AFTRLKVKDAQSPFQNLHLLKVL 430

Query: 162 ALGMNKLRTIPNSI-TNASELTLLELGKNSFSGLV---PNTFGNLRFLSLLDLGNNYLTT 217
            L  + L      +      L  L L  N F        N+   L  L +L L    L++
Sbjct: 431 NLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS 490

Query: 218 RSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQ 277
                      + T+   +  + L  N+L+      + +              +   +P 
Sbjct: 491 IDQ-------HAFTSLKMMNHVDLSHNRLTSSSIEALSHLK--GIYLNLASNHISIILPS 541

Query: 278 EIGNLNGLIDLRLQDNDLNGTI------------PTTVGRLQQ--------LQGLFLFGN 317
            +  L+    + L+ N L+ T                +   +         L+G+ L   
Sbjct: 542 LLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDV 601

Query: 318 NL 319
            L
Sbjct: 602 TL 603

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 96.2 bits (240), Expect = 3e-22
 Identities = 55/277 (19%), Positives = 88/277 (31%), Gaps = 20/277 (7%)

Query: 58  KMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFT 117
           K     +  L+  +P  L     S E L    N        + S+   L  L L   +  
Sbjct: 15  KTYNCENLGLN-EIPGTL---PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY 70

Query: 118 GRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTI-PNSIT 176
               +   +  +L +LVL     N L   +  T       LK L      + +I    + 
Sbjct: 71  WIHEDTFQSQHRLDTLVL---TANPLI-FMAETALSGPKALKHLFFIQTGISSIDFIPLH 126

Query: 177 NASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYL 236
           N   L  L LG N  S +          L +LD  NN +    S  + S L   TN    
Sbjct: 127 NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY-LSKEDMSSLQQATN---- 181

Query: 237 KVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGN--LNGLIDLRLQDND 294
             L L+ N ++GI  P   + +   Q       +    I + + N  +  L     +D D
Sbjct: 182 LSLNLNGNDIAGI-EPGAFDSA-VFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMD 239

Query: 295 LNGTIPTTVGRLQ--QLQGLFLFGNNLQGSIPSDLCH 329
                P     L    ++ + L  +       +    
Sbjct: 240 DEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHC 276

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  121 bits (305), Expect = 8e-31
 Identities = 54/289 (18%), Positives = 84/289 (29%), Gaps = 28/289 (9%)

Query: 55  SSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHN 114
            S K + LS N L         +  P L+ L L           +    + L  L L  N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFS-FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 115 KFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRT--IP 172
                       LS L+ LV       +L       +   L  LK L +  N +++  +P
Sbjct: 87  PIQSLALGAFSGLSSLQKLVA---VETNLASLENFPIG-HLKTLKELNVAHNLIQSFKLP 142

Query: 173 NSITNASELTLLELGKNSFSGLVPNTFGNLRFLSL----LDLGNNYLTTRSSTTEWSFLS 228
              +N + L  L+L  N    +       L  + L    LDL  N +             
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN--------FIQP 194

Query: 229 SLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQE---IGNLNGL 285
                I L  L L +N  S  +          L+       E +     E      L GL
Sbjct: 195 GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254

Query: 286 IDLRLQDNDLN------GTIPTTVGRLQQLQGLFLFGNNLQGSIPSDLC 328
            +L +++  L         I      L  +    L    ++        
Sbjct: 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYN 303

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  116 bits (292), Expect = 4e-29
 Identities = 52/280 (18%), Positives = 94/280 (33%), Gaps = 18/280 (6%)

Query: 51  FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLW 110
           F  ++++    L S ++               + L L +  F     L L    +L    
Sbjct: 278 FNCLTNVSSFSLVSVTIERVKDFSY---NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTS 334

Query: 111 LEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRT 170
            +          +  +L  L  L L      S  G    +      +LK+L L  N + T
Sbjct: 335 NKGGN-----AFSEVDLPSLEFLDLSRN-GLSFKGCCSQSDF-GTTSLKYLDLSFNGVIT 387

Query: 171 IPNSITNASELTLLELGKNSFSGLVP-NTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSS 229
           + ++     +L  L+   ++   +   + F +LR L  LD+ + +          +F   
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV-------AFNGI 440

Query: 230 LTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLR 289
                 L+VL +  N       P I     +L       C+L+   P    +L+ L  L 
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500

Query: 290 LQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDLCH 329
           +  N+           L  LQ L    N++  S   +L H
Sbjct: 501 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 540

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  115 bits (289), Expect = 1e-28
 Identities = 70/289 (24%), Positives = 110/289 (38%), Gaps = 22/289 (7%)

Query: 46  LTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNG--FFGQIPLSLSKC 103
             +     + SLK +  +SN    +        LPSLE L L  NG  F G    S    
Sbjct: 316 FGQFPTLKLKSLKRLTFTSNKGGNAFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGT 372

Query: 104 TQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLAL 163
           T L++L L  N     +  N   L +L  L      H++L      ++ +SL NL +L +
Sbjct: 373 TSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDF---QHSNLKQMSEFSVFLSLRNLIYLDI 428

Query: 164 GMNKLRTI-PNSITNASELTLLELGKNSFSGLV-PNTFGNLRFLSLLDLGNNYLTTRSST 221
                R          S L +L++  NSF     P+ F  LR L+ LDL    L   S  
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP- 487

Query: 222 TEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGN 281
                 ++  +   L+VL +  N    +        + SLQ        +  S  QE+ +
Sbjct: 488 ------TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN-SLQVLDYSLNHIMTSKKQELQH 540

Query: 282 L-NGLIDLRLQDNDLNGTIPTT--VGRLQQLQGLFLFGNNLQGSIPSDL 327
             + L  L L  ND   T      +  ++  + L +    ++ + PSD 
Sbjct: 541 FPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDK 589

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  109 bits (274), Expect = 1e-26
 Identities = 51/281 (18%), Positives = 89/281 (31%), Gaps = 16/281 (5%)

Query: 51  FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLW 110
           + ++S L  + L+ N +           L SL++LV             +     L+ L 
Sbjct: 72  YQSLSHLSTLILTGNPIQSLALGAFSG-LSSLQKLVAVETNLASLENFPIGHLKTLKELN 130

Query: 111 LEHNKFTG-RLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLK----WLALGM 165
           + HN     +LPE   NL+ L  L L   + N +     + L   L  +      L L +
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDL---SSNKIQSIYCTDLR-VLHQMPLLNLSLDLSL 186

Query: 166 NKLRTIPNSITNASELTLLELGKNSFSG-LVPNTFGNLRFLSLLDLGNNYLTTRSSTTEW 224
           N +  I         L  L L  N  S  ++      L  L +  L         +  ++
Sbjct: 187 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 246

Query: 225 SFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSD--SLQQFYAYDCELKGSIPQEIGNL 282
              S+L     L +       L   L  +I  F+   ++  F      ++          
Sbjct: 247 DK-SALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYN 303

Query: 283 NGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSI 323
            G   L L +          +  L++L      G N    +
Sbjct: 304 FGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV 344

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  104 bits (262), Expect = 5e-25
 Identities = 57/298 (19%), Positives = 93/298 (31%), Gaps = 22/298 (7%)

Query: 44  SVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKC 103
             L    F++   L+++ LS   +         + L  L  L+L  N        + S  
Sbjct: 41  RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS-LSHLSTLILTGNPIQSLALGAFSGL 99

Query: 104 TQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLAL 163
           + LQ L              IG+L  L+ L +    HN +          +L NL+ L L
Sbjct: 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVA---HNLIQSFKLPEYFSNLTNLEHLDL 156

Query: 164 GMNKLRTI-PNSITNASELTL----LELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTR 218
             NK+++I    +    ++ L    L+L  N  + + P  F  +R L  L L NN+ +  
Sbjct: 157 SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLN 215

Query: 219 SSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELK------ 272
              T    L+ L     +  L L   +  G L     +  + L      +  L       
Sbjct: 216 VMKTCIQGLAGLE----VHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYL 271

Query: 273 GSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDLCHW 330
             I      L  +    L    +              Q L L            L   
Sbjct: 272 DDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSL 327

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  104 bits (261), Expect = 6e-25
 Identities = 54/313 (17%), Positives = 96/313 (30%), Gaps = 41/313 (13%)

Query: 44  SVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGF-FGQIPLSLSK 102
             L    F  +SSL+ +     +L+      + + L +L++L +  N     ++P   S 
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLENFPIGH-LKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 103 CTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLG-HKAHNSLHGHLPSTLSVSLPNLKWL 161
            T L+HL L  NK       ++  L ++  L L    + N ++   P         L  L
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF--KEIRLHKL 205

Query: 162 ALGMNKLRT--IPNSITNASELTLLELGKNSFSG------LVPNTFGNLRFLSLLDLGNN 213
            L  N      +   I   + L +  L    F           +    L  L++ +    
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265

Query: 214 YLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCEL-- 271
           YL          F         +    L S  +  +      +++   Q     +C+   
Sbjct: 266 YLDYYLDDIIDLF----NCLTNVSSFSLVSVTIERVKD---FSYNFGWQHLELVNCKFGQ 318

Query: 272 -----------------KGSIPQEIGNLNGLIDLRLQDNDLN--GTIPTTVGRLQQLQGL 312
                            KG       +L  L  L L  N L+  G    +      L+ L
Sbjct: 319 FPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378

Query: 313 FLFGNNLQGSIPS 325
            L  N +     +
Sbjct: 379 DLSFNGVITMSSN 391

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 82.0 bits (203), Expect = 2e-17
 Identities = 34/167 (20%), Positives = 60/167 (35%), Gaps = 6/167 (3%)

Query: 44  SVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKC 103
            V     F  +SSL++++++ NS   +   D+   L +L  L L         P + +  
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493

Query: 104 TQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLAL 163
           + LQ L + HN F          L+ L+ L     + N +       L     +L +L L
Sbjct: 494 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY---SLNHIMTSKKQELQHFPSSLAFLNL 550

Query: 164 GMNKLR-TIPNS--ITNASELTLLELGKNSFSGLVPNTFGNLRFLSL 207
             N    T  +   +    +   L +         P+    +  LSL
Sbjct: 551 TQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSL 597

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 22/94 (23%), Positives = 30/94 (31%), Gaps = 1/94 (1%)

Query: 236 LKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDL 295
            K L L  N L  +      +F   LQ      CE++        +L+ L  L L  N +
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFP-ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 296 NGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDLCH 329
                     L  LQ L     NL       + H
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLENFPIGH 122

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.9 bits (104), Expect = 5e-05
 Identities = 13/74 (17%), Positives = 19/74 (25%)

Query: 256 NFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLF 315
           N   S +        L+        +   L  L L   ++          L  L  L L 
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84

Query: 316 GNNLQGSIPSDLCH 329
           GN +Q         
Sbjct: 85  GNPIQSLALGAFSG 98

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  117 bits (296), Expect = 8e-31
 Identities = 58/286 (20%), Positives = 113/286 (39%), Gaps = 30/286 (10%)

Query: 53  NISSLKMIRLSSNSLSGSLPNDLCN-RLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWL 111
           N ++ ++   +  +L  +  + L +   P    L LRS     Q P    + + LQH+ +
Sbjct: 54  NSNNPQIETRTGRALK-ATADLLEDATQPGRVALELRSVPL-PQFPDQAFRLSHLQHMTI 111

Query: 112 EHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLAL-GMNKLRT 170
           +       LP+ +   + L +L L     N L   LP++++ SL  L+ L++    +L  
Sbjct: 112 DAAGLM-ELPDTMQQFAGLETLTLAR---NPLR-ALPASIA-SLNRLRELSIRACPELTE 165

Query: 171 IPNSITNASE---------LTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSST 221
           +P  + +            L  L L       L P +  NL+ L  L + N+ L+     
Sbjct: 166 LPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL-PASIANLQNLKSLKIRNSPLS----- 219

Query: 222 TEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGN 281
              +   ++ +   L+ L L         PP+ G  +  L++    DC    ++P +I  
Sbjct: 220 ---ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRA-PLKRLILKDCSNLLTLPLDIHR 275

Query: 282 LNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDL 327
           L  L  L L+       +P+ + +L     + +   +LQ  +    
Sbjct: 276 LTQLEKLDLRGCVNLSRLPSLIAQLPANCIILV-PPHLQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  111 bits (281), Expect = 1e-28
 Identities = 61/288 (21%), Positives = 95/288 (32%), Gaps = 33/288 (11%)

Query: 53  NISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQ--LQHLW 110
                     +    +    N       +  Q+  R+          L   TQ     L 
Sbjct: 34  QWQRHYNADRNRWHSAWRQANS------NNPQIETRTGRALKATADLLEDATQPGRVALE 87

Query: 111 LEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRT 170
           L       + P+    LS L+ + +       L   LP T+      L+ L L  N LR 
Sbjct: 88  LRSVPLP-QFPDQAFRLSHLQHMTIDA---AGLM-ELPDTMQ-QFAGLETLTLARNPLRA 141

Query: 171 IPNSITNASELTLLELGKNSFSGLVPNTFGNLRF---------LSLLDLGNNYLTTRSST 221
           +P SI + + L  L +        +P    +            L  L L    +      
Sbjct: 142 LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR----- 196

Query: 222 TEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGN 281
              S  +S+ N   LK L + ++ LS  L P I +    L++     C    + P   G 
Sbjct: 197 ---SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLP-KLEELDLRGCTALRNYPPIFGG 251

Query: 282 LNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDLCH 329
              L  L L+D     T+P  + RL QL+ L L G      +PS +  
Sbjct: 252 RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 95.8 bits (239), Expect = 8e-23
 Identities = 38/252 (15%), Positives = 80/252 (31%), Gaps = 36/252 (14%)

Query: 103 CTQLQHLWLEHNKFTGRLPENIGNLSKLR-----------------SLVLGHKAHNSLHG 145
            +  ++L+ + +       + +    +                   +  +  +   +L  
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKA 70

Query: 146 HLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFL 205
                   + P    L L    L   P+     S L  + +       L P+T      L
Sbjct: 71  TADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMEL-PDTMQQFAGL 129

Query: 206 SLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSD------ 259
             L L  N L         +  +S+ +   L+ L + +      LP  + +         
Sbjct: 130 ETLTLARNPLR--------ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG 181

Query: 260 --SLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGN 317
             +LQ        ++ S+P  I NL  L  L+++++ L+  +   +  L +L+ L L G 
Sbjct: 182 LVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGC 239

Query: 318 NLQGSIPSDLCH 329
               + P     
Sbjct: 240 TALRNYPPIFGG 251

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 92.7 bits (231), Expect = 1e-21
 Identities = 49/255 (19%), Positives = 89/255 (34%), Gaps = 49/255 (19%)

Query: 51  FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLW 110
            + +S L+ + + +  L   LP+ +      LE L L  N     +P S++   +L+ L 
Sbjct: 100 AFRLSHLQHMTIDAAGLM-ELPDTMQQ-FAGLETLTLARNPL-RALPASIASLNRLRELS 156

Query: 111 LEHNKFTGRLPENIGN---------LSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWL 161
           +        LPE + +         L  L+SL L       +   LP++++ +L NLK L
Sbjct: 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEW---TGIR-SLPASIA-NLQNLKSL 211

Query: 162 ALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSST 221
            +  + L  +  +I +  +L  L+L   +     P  FG    L  L L +         
Sbjct: 212 KIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDC-------- 263

Query: 222 TEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGN 281
                                 + L   LP  I   +  L++     C     +P  I  
Sbjct: 264 ----------------------SNLL-TLPLDIHRLT-QLEKLDLRGCVNLSRLPSLIAQ 299

Query: 282 LNGLIDLRLQDNDLN 296
           L     + +  +   
Sbjct: 300 LPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 85.0 bits (211), Expect = 6e-19
 Identities = 47/215 (21%), Positives = 78/215 (36%), Gaps = 25/215 (11%)

Query: 49  NCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKC----- 103
           +     + L+ + L+ N L  +LP  + + L  L +L +R+     ++P  L+       
Sbjct: 121 DTMQQFAGLETLTLARNPLR-ALPASIAS-LNRLRELSIRACPELTELPEPLASTDASGE 178

Query: 104 ----TQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLK 159
                 LQ L LE       LP +I NL  L+SL +    ++ L   L   +   LP L+
Sbjct: 179 HQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIR---NSPLS-ALGPAIH-HLPKLE 232

Query: 160 WLAL-GMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTR 218
            L L G   LR  P      + L  L L   S    +P     L  L  LDL      + 
Sbjct: 233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS- 291

Query: 219 SSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPL 253
                    S +       ++ +  +  + +    
Sbjct: 292 ------RLPSLIAQLPANCIILVPPHLQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 65.4 bits (160), Expect = 4e-12
 Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 1/99 (1%)

Query: 53  NISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLE 112
           ++  L+ + L   +   + P         L++L+L+       +PL + + TQL+ L L 
Sbjct: 227 HLPKLEELDLRGCTALRNYPPIFGG-RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLR 285

Query: 113 HNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTL 151
                 RLP  I  L     +++       L  H P   
Sbjct: 286 GCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  112 bits (283), Expect = 5e-29
 Identities = 54/277 (19%), Positives = 98/277 (35%), Gaps = 25/277 (9%)

Query: 51  FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLW 110
             N +  K+ +++ +SL       L     ++++L L  N         L+  T+L+ L 
Sbjct: 6   KQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 111 LEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRT 170
           L  N        ++ +LS LR+L L +   N +       L    P+++ L    N +  
Sbjct: 65  LSSNVLYE--TLDLESLSTLRTLDLNN---NYV-----QELL-VGPSIETLHAANNNISR 113

Query: 171 IPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSL 230
           +  S         + L  N  + L     G    +  LDL  N + T +        +S 
Sbjct: 114 VSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA---ELAASS 168

Query: 231 TNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRL 290
                L+ L L  N +  +    +      L+       +L   +  E  +  G+  + L
Sbjct: 169 DT---LEHLNLQYNFIYDV-KGQV--VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISL 221

Query: 291 QDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDL 327
           ++N L   I   +   Q L+   L GN        D 
Sbjct: 222 RNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDF 257

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 77.7 bits (192), Expect = 2e-16
 Identities = 32/179 (17%), Positives = 64/179 (35%), Gaps = 12/179 (6%)

Query: 55  SSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHN 114
            S++ +  ++N++S  +           + + L +N       L     +++Q+L L+ N
Sbjct: 99  PSIETLHAANNNIS-RVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154

Query: 115 KFTG-RLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPN 173
           +       E   +   L  L L    +N ++  +     V    LK L L  NKL  +  
Sbjct: 155 EIDTVNFAELAASSDTLEHLNL---QYNFIY-DVKG--QVVFAKLKTLDLSSNKLAFMGP 208

Query: 174 SITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTN 232
              +A+ +T + L  N    +        + L   DL  N     +    +S    +  
Sbjct: 209 EFQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQT 266

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 75.4 bits (186), Expect = 1e-15
 Identities = 28/170 (16%), Positives = 53/170 (31%), Gaps = 8/170 (4%)

Query: 44  SVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKC 103
           ++L        S ++ + L  N +      +L     +LE L L+ N F   +       
Sbjct: 133 TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVK-GQVVF 190

Query: 104 TQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLAL 163
            +L+ L L  NK    +     + + +  + L    +N L   +   L     NL+   L
Sbjct: 191 AKLKTLDLSSNKLA-FMGPEFQSAAGVTWISL---RNNKLV-LIEKALR-FSQNLEHFDL 244

Query: 164 GMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNN 213
             N           +    +  + K +   L           +L   G  
Sbjct: 245 RGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAY 294

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  107 bits (270), Expect = 5e-27
 Identities = 66/270 (24%), Positives = 120/270 (44%), Gaps = 29/270 (10%)

Query: 51  FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLW 110
             N+++L+ + L+ +++S   P  L N L  +  L L +N     +   LS  T L +L 
Sbjct: 106 LQNLTNLRELYLNEDNISDISP--LAN-LTKMYSLNLGANHNLSDLS-PLSNMTGLNYLT 161

Query: 111 LEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRT 170
           +  +K        I NL+ L SL L +   N +     S L+ SL +L +    +N++  
Sbjct: 162 VTESKVKD--VTPIANLTDLYSLSLNY---NQIED--ISPLA-SLTSLHYFTAYVNQITD 213

Query: 171 IPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSL 230
           I   + N + L  L++G N  + L P    NL  L+ L++G N ++          ++++
Sbjct: 214 ITP-VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD---------INAV 261

Query: 231 TNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRL 290
            +   LK+L + SNQ+S I   ++ N S  L   +  + +L     + IG L  L  L L
Sbjct: 262 KDLTKLKMLNVGSNQISDI--SVLNNLS-QLNSLFLNNNQLGNEDMEVIGGLTNLTTLFL 318

Query: 291 QDNDLNGTIPTTVGRLQQLQGLFLFGNNLQ 320
             N +    P  +  L ++         ++
Sbjct: 319 SQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  106 bits (267), Expect = 2e-26
 Identities = 60/274 (21%), Positives = 111/274 (40%), Gaps = 29/274 (10%)

Query: 51  FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLW 110
             N+  L  + + +N ++    + L N L +L +L L  +      PL+    T++  L 
Sbjct: 84  LSNLVKLTNLYIGTNKITD--ISALQN-LTNLRELYLNEDNISDISPLA--NLTKMYSLN 138

Query: 111 LEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRT 170
           L  N         + N++ L  L +     + +     + ++ +L +L  L+L  N++  
Sbjct: 139 LGANHNLS-DLSPLSNMTGLNYLTV---TESKVKD--VTPIA-NLTDLYSLSLNYNQIED 191

Query: 171 IPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSL 230
           I   + + + L       N  + + P    N+  L+ L +GNN +T          LS L
Sbjct: 192 ISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD---------LSPL 239

Query: 231 TNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRL 290
            N   L  L + +NQ+S I    + + +  L+       ++       + NL+ L  L L
Sbjct: 240 ANLSQLTWLEIGTNQISDI--NAVKDLT-KLKMLNVGSNQISD--ISVLNNLSQLNSLFL 294

Query: 291 QDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIP 324
            +N L       +G L  L  LFL  N++    P
Sbjct: 295 NNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  102 bits (257), Expect = 4e-25
 Identities = 58/277 (20%), Positives = 110/277 (39%), Gaps = 31/277 (11%)

Query: 53  NISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLE 112
            +++L+ + L+ N ++   P    + L  L  L + +N        +L   T L+ L+L 
Sbjct: 64  YLTNLEYLNLNGNQITDISPL---SNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLN 118

Query: 113 HNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIP 172
            +  +      + NL+K+ SL LG    N       S LS ++  L +L +  +K++ + 
Sbjct: 119 EDNISD--ISPLANLTKMYSLNLGA---NHNLSD-LSPLS-NMTGLNYLTVTESKVKDVT 171

Query: 173 NSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTN 232
             I N ++L  L L  N    + P    +L  L       N +T          ++ + N
Sbjct: 172 P-IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD---------ITPVAN 219

Query: 233 CIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQD 292
              L  L + +N+++ + P  + N S  L        ++       + +L  L  L +  
Sbjct: 220 MTRLNSLKIGNNKITDLSP--LANLS-QLTWLEIGTNQISD--INAVKDLTKLKMLNVGS 274

Query: 293 NDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDLCH 329
           N +  +  + +  L QL  LFL  N L       +  
Sbjct: 275 NQI--SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGG 309

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 97.2 bits (243), Expect = 4e-23
 Identities = 60/269 (22%), Positives = 110/269 (40%), Gaps = 31/269 (11%)

Query: 53  NISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLE 112
           +++      L   S++  +       L S+ +LV+        I   +   T L++L L 
Sbjct: 20  DLAEGIRAVLQKASVTDVVT---QEELESITKLVVAGEKV-ASIQ-GIEYLTNLEYLNLN 74

Query: 113 HNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIP 172
            N+ T      + NL KL +L +G    N +     S L  +L NL+ L L  + +  I 
Sbjct: 75  GNQITD--ISPLSNLVKLTNLYIG---TNKITD--ISALQ-NLTNLRELYLNEDNISDIS 126

Query: 173 NSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTN 232
             + N +++  L LG N       +   N+  L+ L +  + +           ++ + N
Sbjct: 127 P-LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKD---------VTPIAN 175

Query: 233 CIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQD 292
              L  L L+ NQ+  I P  + + + SL  F AY  ++    P  + N+  L  L++ +
Sbjct: 176 LTDLYSLSLNYNQIEDISP--LASLT-SLHYFTAYVNQITDITP--VANMTRLNSLKIGN 230

Query: 293 NDLNGTIPTTVGRLQQLQGLFLFGNNLQG 321
           N +    P  +  L QL  L +  N +  
Sbjct: 231 NKITDLSP--LANLSQLTWLEIGTNQISD 257

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 84.1 bits (209), Expect = 1e-18
 Identities = 50/226 (22%), Positives = 82/226 (36%), Gaps = 26/226 (11%)

Query: 99  SLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNL 158
             +   +     L+    T         L  +  LV+  +   S+ G     +   L NL
Sbjct: 17  PDADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVASIQG-----IE-YLTNL 68

Query: 159 KWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTR 218
           ++L L  N++  I   ++N  +LT L +G N  + +      NL  L  L L  + ++  
Sbjct: 69  EYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNEDNISD- 124

Query: 219 SSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQE 278
                   +S L N   +  L L +N     L PL  N +  L      + ++K   P  
Sbjct: 125 --------ISPLANLTKMYSLNLGANHNLSDLSPL-SNMT-GLNYLTVTESKVKDVTP-- 172

Query: 279 IGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIP 324
           I NL  L  L L  N +    P  +  L  L     + N +    P
Sbjct: 173 IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP 216

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 59.1 bits (144), Expect = 5e-10
 Identities = 32/168 (19%), Positives = 64/168 (38%), Gaps = 24/168 (14%)

Query: 164 GMNKLRTIPNSIT------NASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTT 217
           G   L T+P  I       + +E     L K S + +V      L  ++ L +    + +
Sbjct: 1   GAATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVAS 58

Query: 218 RSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQ 277
                    +  +     L+ L L+ NQ++ I P  + N    L   Y    ++  +   
Sbjct: 59  ---------IQGIEYLTNLEYLNLNGNQITDISP--LSNLV-KLTNLYIGTNKI--TDIS 104

Query: 278 EIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPS 325
            + NL  L +L L +++++   P  +  L ++  L L  N+    +  
Sbjct: 105 ALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP 150

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  106 bits (266), Expect = 7e-26
 Identities = 54/277 (19%), Positives = 97/277 (35%), Gaps = 25/277 (9%)

Query: 51  FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLW 110
             N +  K+ +++ +SL       L     ++++L L  N         L+  T+L+ L 
Sbjct: 6   KQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 111 LEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRT 170
           L  N        ++ +LS LR+L L    +N +       L    P+++ L    N +  
Sbjct: 65  LSSNVLYE--TLDLESLSTLRTLDLN---NNYV-----QELL-VGPSIETLHAANNNISR 113

Query: 171 IPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSL 230
           +  S         + L  N  + L     G    +  LDL  N + T          +S 
Sbjct: 114 VSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT---VNFAELAASS 168

Query: 231 TNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRL 290
                L+ L L  N +  +    +      L+       +L   +  E  +  G+  + L
Sbjct: 169 DT---LEHLNLQYNFIYDV-KGQV--VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISL 221

Query: 291 QDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDL 327
           ++N L   I   +   Q L+   L GN        D 
Sbjct: 222 RNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDF 257

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 94.1 bits (234), Expect = 1e-21
 Identities = 53/289 (18%), Positives = 98/289 (33%), Gaps = 30/289 (10%)

Query: 44  SVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKC 103
                +   +  ++K + LS N LS     DL      LE L L SN       L L   
Sbjct: 23  KQALASLRQSAWNVKELDLSGNPLSQISAADLAP-FTKLELLNLSSNVL--YETLDLESL 79

Query: 104 TQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLAL 163
           + L+ L L +N         +     + +L     A+N++   +  +        K + L
Sbjct: 80  STLRTLDLNNNYVQ-----ELLVGPSIETLHA---ANNNIS-RVSCS---RGQGKKNIYL 127

Query: 164 GMNKLRTIP-NSITNASELTLLELGKNSFSGL-VPNTFGNLRFLSLLDLGNNYLTTRSST 221
             NK+  +        S +  L+L  N    +       +   L  L+L  N++      
Sbjct: 128 ANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD---- 183

Query: 222 TEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGN 281
                +        LK L L SN+L+ +  P   + +  +      + +L   I + +  
Sbjct: 184 -----VKGQVVFAKLKTLDLSSNKLAFM-GPEFQSAA-GVTWISLRNNKLV-LIEKALRF 235

Query: 282 LNGLIDLRLQDNDLN-GTIPTTVGRLQQLQGLFLFGNNLQGSIPSDLCH 329
              L    L+ N  + GT+     + Q++Q +             + C 
Sbjct: 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECT 284

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 87.6 bits (217), Expect = 2e-19
 Identities = 40/280 (14%), Positives = 75/280 (26%), Gaps = 18/280 (6%)

Query: 44  SVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKC 103
           ++L        S ++ + L  N +      +L     +LE L L+ N F   +       
Sbjct: 133 TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVK-GQVVF 190

Query: 104 TQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLAL 163
            +L+ L L  NK    +     + + +  + L    +N L   +   L     NL+   L
Sbjct: 191 AKLKTLDLSSNKLA-FMGPEFQSAAGVTWISL---RNNKLV-LIEKALR-FSQNLEHFDL 244

Query: 164 GMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTE 223
             N           +    +  + K +   L           +L   G        +   
Sbjct: 245 RGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPA--- 301

Query: 224 WSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFS---DSLQQFYAYDCELKGSIPQEIG 280
                     I LK          G     +          ++  A   + +  I Q   
Sbjct: 302 ----PFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTL 357

Query: 281 NLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQ 320
                I L  +   L+  +        +L G         
Sbjct: 358 RKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQI 397

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 76.8 bits (189), Expect = 1e-15
 Identities = 40/211 (18%), Positives = 76/211 (36%), Gaps = 25/211 (11%)

Query: 120 LPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTI-PNSITNA 178
           + E   N ++ +   +     +SL     ++L  S  N+K L L  N L  I    +   
Sbjct: 2   IHEIKQNGNRYKIEKVT---DSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPF 57

Query: 179 SELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKV 238
           ++L LL L  N     +     +L  L  LDL NNY+           L    +   ++ 
Sbjct: 58  TKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE---------LLVGPS---IET 103

Query: 239 LGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNG- 297
           L   +N +S +     G      +  Y  + ++      + G  + +  L L+ N+++  
Sbjct: 104 LHAANNNISRV-SCSRGQ---GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159

Query: 298 TIPTTVGRLQQLQGLFLFGNNLQGSIPSDLC 328
                      L+ L L  N +   +   + 
Sbjct: 160 NFAELAASSDTLEHLNLQYNFIY-DVKGQVV 189

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  105 bits (265), Expect = 2e-25
 Identities = 47/281 (16%), Positives = 87/281 (30%), Gaps = 18/281 (6%)

Query: 46  LTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQ 105
                F+ ++++  + L+  S+   L +    +    + L +          L L     
Sbjct: 276 DDIVKFHCLANVSAMSLAGVSIK-YLEDVP--KHFKWQSLSIIRCQLKQFPTLDLP---F 329

Query: 106 LQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGM 165
           L+ L L  NK +  +      L  L  L L   A +       S L     +L+ L L  
Sbjct: 330 LKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLG--TNSLRHLDLSF 385

Query: 166 NKLRTIPNSITNASELTLLELGKNSFSGLVP-NTFGNLRFLSLLDLGNNYLTTRSSTTEW 224
           N    +  +     EL  L+   ++   +   + F +L  L  LD+              
Sbjct: 386 NGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD---- 441

Query: 225 SFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNG 284
                      L  L +  N         +   + +L       C+L+         L+ 
Sbjct: 442 ---GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHR 498

Query: 285 LIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPS 325
           L  L +  N+L     +   +L  L  L    N ++ S   
Sbjct: 499 LQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI 539

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  103 bits (260), Expect = 9e-25
 Identities = 59/280 (21%), Positives = 86/280 (30%), Gaps = 27/280 (9%)

Query: 55  SSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHN 114
           SS K I LS N L         N    L+ L L           +      L +L L  N
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSN-FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90

Query: 115 KFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTI--P 172
                 P +   L+ L +LV        L   L S     L  LK L +  N + +   P
Sbjct: 91  PIQSFSPGSFSGLTSLENLVA---VETKLAS-LESFPIGQLITLKKLNVAHNFIHSCKLP 146

Query: 173 NSITNASELTLLELGKNSFSGLVPNTFGNLRFLSL----LDLGNNYLTTRSSTTEWSFLS 228
              +N + L  ++L  N    +  N    LR        LD+  N +             
Sbjct: 147 AYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID--------FIQD 198

Query: 229 SLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEI---GNLNGL 285
                I L  L L  N  S  +          L        E K     EI     + GL
Sbjct: 199 QAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGL 258

Query: 286 IDLRLQDNDLNGTIPTTVGR-----LQQLQGLFLFGNNLQ 320
            D+ + +  L  T   +        L  +  + L G +++
Sbjct: 259 CDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK 298

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  101 bits (254), Expect = 5e-24
 Identities = 52/294 (17%), Positives = 84/294 (28%), Gaps = 28/294 (9%)

Query: 44  SVLTKNCFYNISSLKMIRLSSNSLSG-----SLPNDLCNRLPSLEQLVLR--SNGFFGQI 96
           S + K C  N++ L + RL                 +   L  +     R      F   
Sbjct: 218 SNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDD 277

Query: 97  PLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLP 156
            +       +  + L          E++    K +SL +                ++ LP
Sbjct: 278 IVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQFP-------TLDLP 328

Query: 157 NLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSL--LDLGNNY 214
            LK L L MNK  +I         L+ L+L +N+ S     ++ +L   SL  LDL  N 
Sbjct: 329 FLKSLTLTMNKG-SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG 387

Query: 215 LTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGS 274
               S+               L+ L    + L  +         + L          K  
Sbjct: 388 AIIMSAN--------FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKID 439

Query: 275 IPQEIGNLNGLIDLRLQDNDLNGTIPTTV-GRLQQLQGLFLFGNNLQGSIPSDL 327
                  L  L  L++  N       + V      L  L L    L+       
Sbjct: 440 FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVF 493

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 98.2 bits (245), Expect = 7e-23
 Identities = 57/290 (19%), Positives = 99/290 (34%), Gaps = 13/290 (4%)

Query: 44  SVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKC 103
            +L    F N S L+ + LS   +  ++ +   + L  L  L+L  N      P S S  
Sbjct: 45  KILKSYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGL 103

Query: 104 TQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLAL 163
           T L++L     K        IG L  L+ L +   AHN +H         +L NL  + L
Sbjct: 104 TSLENLVAVETKLASLESFPIGQLITLKKLNV---AHNFIHSCKLPAYFSNLTNLVHVDL 160

Query: 164 GMNKLRTIPNSI-----TNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTR 218
             N ++TI  +       N      L++  N    +    F  ++ L  L L  N+ ++ 
Sbjct: 161 SYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK-LHELTLRGNFNSSN 219

Query: 219 SSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSD-SLQQFYAYDCELKGSIPQ 277
              T    L+ L     +         L    P ++    D ++ +F             
Sbjct: 220 IMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIV 279

Query: 278 EIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDL 327
           +   L  +  + L    +         +  + Q L +    L+     DL
Sbjct: 280 KFHCLANVSAMSLAGVSIKYLEDVP--KHFKWQSLSIIRCQLKQFPTLDL 327

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 98.2 bits (245), Expect = 7e-23
 Identities = 47/267 (17%), Positives = 79/267 (29%), Gaps = 18/267 (6%)

Query: 55  SSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHN 114
              + + +    L      DL    P L+ L L  N   G I         L +L L  N
Sbjct: 307 FKWQSLSIIRCQLKQFPTLDL----PFLKSLTLTMNK--GSISFKKVALPSLSYLDLSRN 360

Query: 115 KFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPN- 173
             +     +  +L       L   + N     + +     L  L+ L    + L+ +   
Sbjct: 361 ALSFSGCCSYSDLGTNSLRHL-DLSFNGAI-IMSANFM-GLEELQHLDFQHSTLKRVTEF 417

Query: 174 -SITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTN 232
            +  +  +L  L++   +        F  L  L+ L +  N        T  +  ++ TN
Sbjct: 418 SAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF---KDNTLSNVFANTTN 474

Query: 233 CIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQD 292
              L  L L   QL  I   +       LQ        L          L  L  L    
Sbjct: 475 ---LTFLDLSKCQLEQISWGVFDTLH-RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSF 530

Query: 293 NDLNGTIPTTVGRLQQLQGLFLFGNNL 319
           N +  +        + L    L  N++
Sbjct: 531 NRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 94.3 bits (235), Expect = 1e-21
 Identities = 45/288 (15%), Positives = 88/288 (30%), Gaps = 18/288 (6%)

Query: 44  SVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKC 103
             +    ++ +  L  + L+ N +  S      + L SLE LV             + + 
Sbjct: 69  ETIEDKAWHGLHHLSNLILTGNPIQ-SFSPGSFSGLTSLENLVAVETKLASLESFPIGQL 127

Query: 104 TQLQHLWLEHNKFTG-RLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSV---SLPNLK 159
             L+ L + HN     +LP    NL+ L  + L   ++N +     + L     +     
Sbjct: 128 ITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDL---SYNYIQTITVNDLQFLRENPQVNL 184

Query: 160 WLALGMNKLRTIPNSITNASELTLLELGKNSFSG-LVPNTFGNLRFLSLLDLGNNYLTTR 218
            L + +N +  I +      +L  L L  N  S  ++     NL  L +  L        
Sbjct: 185 SLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE 244

Query: 219 SSTTEW--SFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIP 276
            +   +  S +  L + + +    L                + ++         +     
Sbjct: 245 RNLEIFEPSIMEGLCD-VTIDEFRLTYTNDFSDDIVKFHCLA-NVSAMSLAGVSI--KYL 300

Query: 277 QEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIP 324
           +++        L +    L          L  L+ L L  N    S  
Sbjct: 301 EDVPKHFKWQSLSIIRCQLKQFPTLD---LPFLKSLTLTMNKGSISFK 345

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 93.9 bits (234), Expect = 2e-21
 Identities = 48/311 (15%), Positives = 81/311 (26%), Gaps = 35/311 (11%)

Query: 44  SVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLS-- 101
           + L       + +LK + ++ N +         + L +L  + L  N         L   
Sbjct: 117 ASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFL 176

Query: 102 --KCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLK 159
                    L +  N     + +      KL  L L     N    ++  T   +L  L 
Sbjct: 177 RENPQVNLSLDMSLNPIDF-IQDQAFQGIKLHELTLR---GNFNSSNIMKTCLQNLAGLH 232

Query: 160 WLALGMNKLRTIPNSITNASE---------LTLLELGKNSFSGLVPNTFGNLRFLSLLDL 210
              L + + +   N                +    L   +        F  L  +S + L
Sbjct: 233 VHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSL 292

Query: 211 GNNYLTTRSSTTEWSFLSSL------------TNCIYLKVLGLHSNQLSGILPPLIGNFS 258
               +       +     SL             +  +LK L L  N+ S           
Sbjct: 293 AGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFK---KVAL 349

Query: 259 DSLQQFYAYDCELKGSIPQ--EIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFG 316
            SL         L  S          N L  L L  N     +      L++LQ L    
Sbjct: 350 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQH 408

Query: 317 NNLQGSIPSDL 327
           + L+       
Sbjct: 409 STLKRVTEFSA 419

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 90.1 bits (224), Expect = 4e-20
 Identities = 30/165 (18%), Positives = 49/165 (29%), Gaps = 6/165 (3%)

Query: 51  FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLW 110
           F  +  L+ +    ++L           L  L  L +                T L  L 
Sbjct: 395 FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLK 454

Query: 111 LEHNKFTGRLPENI-GNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLR 169
           +  N F      N+  N + L  L L       L          +L  L+ L +  N L 
Sbjct: 455 MAGNSFKDNTLSNVFANTTNLTFLDLS---KCQLEQISWGVFD-TLHRLQLLNMSHNNLL 510

Query: 170 TIPNS-ITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNN 213
            + +S       L+ L+   N             + L+  +L NN
Sbjct: 511 FLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNN 555

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 85.5 bits (212), Expect = 1e-18
 Identities = 51/313 (16%), Positives = 88/313 (28%), Gaps = 49/313 (15%)

Query: 51  FYNISSLKMIRLSSNSLSGSLPND---LCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQ 107
           F N+++L  + LS N +     ND   L         L +  N     I     +  +L 
Sbjct: 149 FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN-PIDFIQDQAFQGIKLH 207

Query: 108 HLWLEHNKFTGRLPEN-IGNLSKLRSLVLGH---KAHNSLHGHLPSTLSV---------- 153
            L L  N  +  + +  + NL+ L    L     K   +L    PS +            
Sbjct: 208 ELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFR 267

Query: 154 ---------------SLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNT 198
                           L N+  ++L    ++ +   +    +   L + +          
Sbjct: 268 LTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLKQF---P 323

Query: 199 FGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFS 258
             +L FL  L L  N  +                   L  L L  N LS        +  
Sbjct: 324 TLDLPFLKSLTLTMNKGSI---------SFKKVALPSLSYLDLSRNALSFSGCCSYSDLG 374

Query: 259 -DSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTV-GRLQQLQGLFLFG 316
            +SL+            +      L  L  L  Q + L      +    L++L  L +  
Sbjct: 375 TNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISY 433

Query: 317 NNLQGSIPSDLCH 329
            N +         
Sbjct: 434 TNTKIDFDGIFLG 446

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 72.4 bits (178), Expect = 3e-14
 Identities = 25/167 (14%), Positives = 52/167 (31%), Gaps = 4/167 (2%)

Query: 44  SVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKC 103
            +     F  ++SL  ++++ NS   +  +++     +L  L L                
Sbjct: 437 KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTL 496

Query: 104 TQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLAL 163
            +LQ L + HN        +   L  L +L     + N +       L     +L +  L
Sbjct: 497 HRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDC---SFNRIET-SKGILQHFPKSLAFFNL 552

Query: 164 GMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDL 210
             N +  I         +   +    +   +   T   +    +LD 
Sbjct: 553 TNNSVACICEHQKFLQWVKEQKQFLVNVEQMTCATPVEMNTSLVLDF 599

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 56.6 bits (137), Expect = 5e-09
 Identities = 30/162 (18%), Positives = 45/162 (27%), Gaps = 34/162 (20%)

Query: 166 NKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWS 225
            KL  +P+ I   S    ++L  N    L   +F N   L  LDL    + T        
Sbjct: 21  QKLSKVPDDI--PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKA--- 75

Query: 226 FLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGL 285
               L +   L  L L  N +                             P     L  L
Sbjct: 76  -WHGLHH---LSNLILTGNPIQSF-------------------------SPGSFSGLTSL 106

Query: 286 IDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDL 327
            +L   +  L       +G+L  L+ L +  N +        
Sbjct: 107 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY 148

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 21/94 (22%), Positives = 32/94 (34%), Gaps = 1/94 (1%)

Query: 236 LKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDL 295
            K + L  N L  +      NFS  LQ      CE++    +    L+ L +L L  N +
Sbjct: 34  TKNIDLSFNPLKILKSYSFSNFS-ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 92

Query: 296 NGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDLCH 329
               P +   L  L+ L      L       +  
Sbjct: 93  QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQ 126

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  104 bits (261), Expect = 4e-25
 Identities = 61/291 (20%), Positives = 105/291 (36%), Gaps = 48/291 (16%)

Query: 46  LTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKC-- 103
           L  N  +++S         N++S     D  +     E+  L       +    L +C  
Sbjct: 5   LPINNNFSLSQN----SFYNTIS-GTYADYFSAWDKWEKQALPGENR-NEAVSLLKECLI 58

Query: 104 TQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLAL 163
            Q   L L     +  LP+N+    ++  L +     N+L      +L     +L++L  
Sbjct: 59  NQFSELQLNRLNLS-SLPDNLP--PQITVLEI---TQNAL-----ISLPELPASLEYLDA 107

Query: 164 GMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTE 223
             N+L T+P    +   L  L++  N  + L P     L +   ++  NN LT       
Sbjct: 108 CDNRLSTLPELPAS---LKHLDVDNNQLTML-PELPALLEY---INADNNQLT------- 153

Query: 224 WSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLN 283
                  T+   L+VL + +NQL+  LP L  +    L+        L+ S+P      +
Sbjct: 154 -MLPELPTS---LEVLSVRNNQLTF-LPELPES----LEALDVSTNLLE-SLPAVPVRNH 203

Query: 284 GL----IDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDLCHW 330
                 I  R ++N +   IP  +  L     + L  N L   I   L   
Sbjct: 204 HSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 67.7 bits (165), Expect = 1e-12
 Identities = 34/178 (19%), Positives = 59/178 (33%), Gaps = 20/178 (11%)

Query: 54  ISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEH 113
            +SLK + + +N L+  LP         LE +   +N    Q+ +     T L+ L + +
Sbjct: 119 PASLKHLDVDNNQLT-MLPELPAL----LEYINADNN----QLTMLPELPTSLEVLSVRN 169

Query: 114 NKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPST---LSVSLPNLKWLALGMNKLRT 170
           N+ T  LPE   +L  L        + N L   LP+       S     +     N++  
Sbjct: 170 NQLT-FLPELPESLEAL------DVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRITH 221

Query: 171 IPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLS 228
           IP +I +      + L  N  S  +  +               Y +            
Sbjct: 222 IPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRP 279

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  102 bits (257), Expect = 1e-24
 Identities = 64/274 (23%), Positives = 106/274 (38%), Gaps = 33/274 (12%)

Query: 51  FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLW 110
             N++ L  I +++N ++   P      L +L  L L +N      PL     T L  L 
Sbjct: 86  LKNLTKLVDILMNNNQIADITPL---ANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLE 140

Query: 111 LEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRT 170
           L  N  +      +  L+ L+ L  G++  +         L+ +L  L+ L +  NK+  
Sbjct: 141 LSSNTISD--ISALSGLTSLQQLSFGNQVTD------LKPLA-NLTTLERLDISSNKVSD 191

Query: 171 IPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSL 230
           I   +   + L  L    N  S + P   G L  L  L L  N L           + +L
Sbjct: 192 ISV-LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD---------IGTL 239

Query: 231 TNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRL 290
            +   L  L L +NQ+S + P  +   +  L +      ++    P  +  L  L +L L
Sbjct: 240 ASLTNLTDLDLANNQISNLAP--LSGLT-KLTELKLGANQISNISP--LAGLTALTNLEL 294

Query: 291 QDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIP 324
            +N L    P  +  L+ L  L L+ NN+    P
Sbjct: 295 NENQLEDISP--ISNLKNLTYLTLYFNNISDISP 326

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 98.9 bits (247), Expect = 3e-23
 Identities = 64/274 (23%), Positives = 109/274 (39%), Gaps = 33/274 (12%)

Query: 51  FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLW 110
              +++L  I  S+N L+   P      L  L  +++ +N      P  L+  T L  L 
Sbjct: 64  VEYLNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 118

Query: 111 LEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRT 170
           L +N+ T    + + NL+ L  L L     N++     S LS  L +L+ L+ G      
Sbjct: 119 LFNNQITD--IDPLKNLTNLNRLELS---SNTISD--ISALS-GLTSLQQLSFGNQVTDL 170

Query: 171 IPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSL 230
            P  + N + L  L++  N  S +  +    L  L  L   NN ++          ++ L
Sbjct: 171 KP--LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISD---------ITPL 217

Query: 231 TNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRL 290
                L  L L+ NQL  I    + + + +L      + ++    P  +  L  L +L+L
Sbjct: 218 GILTNLDELSLNGNQLKDI--GTLASLT-NLTDLDLANNQISNLAP--LSGLTKLTELKL 272

Query: 291 QDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIP 324
             N ++   P  +  L  L  L L  N L+   P
Sbjct: 273 GANQISNISP--LAGLTALTNLELNENQLEDISP 304

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 94.6 bits (236), Expect = 7e-22
 Identities = 58/272 (21%), Positives = 103/272 (37%), Gaps = 33/272 (12%)

Query: 53  NISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLE 112
            ++      L   +++ ++       L  +  L     G   +    +     L  +   
Sbjct: 22  ALAEKMKTVLGKTNVTDTVSQT---DLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFS 76

Query: 113 HNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIP 172
           +N+ T      + NL+KL  +++    +N +     + L+ +L NL  L L  N++  I 
Sbjct: 77  NNQLTD--ITPLKNLTKLVDILMN---NNQIAD--ITPLA-NLTNLTGLTLFNNQITDID 128

Query: 173 NSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTN 232
             + N + L  LEL  N+ S +       L  L  L  GN              L  L N
Sbjct: 129 P-LKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFGNQVTD----------LKPLAN 175

Query: 233 CIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQD 292
              L+ L + SN++S I   ++   + +L+   A + ++    P  +G L  L +L L  
Sbjct: 176 LTTLERLDISSNKVSDI--SVLAKLT-NLESLIATNNQISDITP--LGILTNLDELSLNG 230

Query: 293 NDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIP 324
           N L      T+  L  L  L L  N +    P
Sbjct: 231 NQL--KDIGTLASLTNLTDLDLANNQISNLAP 260

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 89.3 bits (222), Expect = 5e-20
 Identities = 59/269 (21%), Positives = 107/269 (39%), Gaps = 30/269 (11%)

Query: 51  FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLW 110
             N+++L+ + +SSN +S    + L   L +LE L+  +N      PL     T L  L 
Sbjct: 173 LANLTTLERLDISSNKVSD--ISVLAK-LTNLESLIATNNQISDITPLG--ILTNLDELS 227

Query: 111 LEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRT 170
           L  N+        + +L+ L  L L +   N +    P +    L  L  L LG N++  
Sbjct: 228 LNGNQLKD--IGTLASLTNLTDLDLAN---NQISNLAPLS---GLTKLTELKLGANQISN 279

Query: 171 IPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSL 230
           I   +   + LT LEL +N    + P    NL+ L+ L L  N ++          +S +
Sbjct: 280 ISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISD---------ISPV 327

Query: 231 TNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRL 290
           ++   L+ L  ++N++S +    + N + ++    A   ++    P  + NL  +  L L
Sbjct: 328 SSLTKLQRLFFYNNKVSDV--SSLANLT-NINWLSAGHNQISDLTP--LANLTRITQLGL 382

Query: 291 QDNDLNGTIPTTVGRLQQLQGLFLFGNNL 319
            D             +     +      L
Sbjct: 383 NDQAWTNAPVNYKANVSIPNTVKNVTGAL 411

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 76.2 bits (188), Expect = 1e-15
 Identities = 51/244 (20%), Positives = 90/244 (36%), Gaps = 29/244 (11%)

Query: 81  SLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAH 140
            L    +  +    QI  + +   +     L     T     +  +L ++ +L       
Sbjct: 2   PLGSATITQDTPINQIF-TDTALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGI 58

Query: 141 NSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFG 200
            S+ G     +   L NL  +    N+L  I   + N ++L  + +  N  + + P    
Sbjct: 59  KSIDG-----VE-YLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP--LA 109

Query: 201 NLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDS 260
           NL  L+ L L NN +T          +  L N   L  L L SN +S I    +   + S
Sbjct: 110 NLTNLTGLTLFNNQITD---------IDPLKNLTNLNRLELSSNTISDI--SALSGLT-S 157

Query: 261 LQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQ 320
           LQQ   +  ++    P  + NL  L  L +  N +  +  + + +L  L+ L    N + 
Sbjct: 158 LQQLS-FGNQVTDLKP--LANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQIS 212

Query: 321 GSIP 324
              P
Sbjct: 213 DITP 216

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 63.1 bits (154), Expect = 3e-11
 Identities = 36/165 (21%), Positives = 65/165 (39%), Gaps = 16/165 (9%)

Query: 53  NISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLE 112
            +++L  + L+ N L    P    + L +L  L L  N      P+S    T+LQ L+  
Sbjct: 285 GLTALTNLELNENQLEDISP---ISNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFY 339

Query: 113 HNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIP 172
           +NK +     ++ NL+ +  L  G   HN +    P     +L  +  L L        P
Sbjct: 340 NNKVSD--VSSLANLTNINWLSAG---HNQISDLTPLA---NLTRITQLGLNDQAWTNAP 391

Query: 173 NSITNASELTLLELGKNSFSGLV-PNTFGNLRFLSLLDLGNNYLT 216
            +    + +++    KN    L+ P T  +    +  D+  N  +
Sbjct: 392 VNY--KANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPS 434

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 26/144 (18%), Positives = 51/144 (35%), Gaps = 11/144 (7%)

Query: 53  NISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLE 112
           +++ L+ +   +N +S    + L N L ++  L    N      PL+    T++  L L 
Sbjct: 329 SLTKLQRLFFYNNKVSD--VSSLAN-LTNINWLSAGHNQISDLTPLA--NLTRITQLGLN 383

Query: 113 HNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIP 172
              +T        N+S   ++        +     P+T+S    +     +  N      
Sbjct: 384 DQAWTNAPVNYKANVSIPNTVKN-----VTGALIAPATIS-DGGSYTEPDITWNLPSYTN 437

Query: 173 NSITNASELTLLELGKNSFSGLVP 196
                 S+   +  G  +FSG V 
Sbjct: 438 EVSYTFSQPVTIGKGTTTFSGTVT 461

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  102 bits (257), Expect = 1e-24
 Identities = 58/288 (20%), Positives = 111/288 (38%), Gaps = 17/288 (5%)

Query: 44  SVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKC 103
             L ++ F +   L+ + L+ N +S ++     N L +L  L LRSN          +  
Sbjct: 45  KTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGL 103

Query: 104 TQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLAL 163
           + L  L +  NK    L     +L  L+SL +G    N L  ++       L +L+ L L
Sbjct: 104 SNLTKLDISENKIVILLDYMFQDLYNLKSLEVG---DNDLV-YISHRAFSGLNSLEQLTL 159

Query: 164 GMNKLRTIP-NSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTT 222
               L +IP  ++++   L +L L   + + +   +F  L  L +L++ +       +  
Sbjct: 160 EKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPN 219

Query: 223 EWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEI-GN 281
               L+       L  L +    L+ +    + +    L+        +  +I   +   
Sbjct: 220 CLYGLN-------LTSLSITHCNLTAVPYLAVRHLV-YLRFLNLSYNPIS-TIEGSMLHE 270

Query: 282 LNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDLCH 329
           L  L +++L    L    P     L  L+ L + GN L  ++   + H
Sbjct: 271 LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFH 317

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 97.1 bits (242), Expect = 1e-22
 Identities = 55/282 (19%), Positives = 95/282 (33%), Gaps = 22/282 (7%)

Query: 44  SVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKC 103
           S +    F N+ +L+ + L SN L   +P  +   L +L +L +  N     +       
Sbjct: 69  SAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDL 127

Query: 104 TQLQHLWLEHNKFTGRLPENI-GNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLA 162
             L+ L +  N     +       L+ L  L L      +L   +P+     L  L  L 
Sbjct: 128 YNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTL---EKCNLT-SIPTEALSHLHGLIVLR 182

Query: 163 LGMNKLRTIPNSI-TNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSST 221
           L    +  I +        L +LE+    +   +         L+ L + +  LT     
Sbjct: 183 LRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYL 242

Query: 222 TEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSD--SLQQFYAYDCELKGSIPQEI 279
                   + + +YL+ L L  N +S I         +   LQ+      +L   +    
Sbjct: 243 A-------VRHLVYLRFLNLSYNPISTIEG---SMLHELLRLQEIQLVGGQLA-VVEPYA 291

Query: 280 -GNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQ 320
              LN L  L +  N L     +    +  L+ L L  N L 
Sbjct: 292 FRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 75.5 bits (186), Expect = 2e-15
 Identities = 60/229 (26%), Positives = 91/229 (39%), Gaps = 22/229 (9%)

Query: 105 QLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALG 164
           Q + +     +F   +PE I   ++ R L LG    N +   L      S P+L+ L L 
Sbjct: 12  QDRAVLCHRKRFV-AVPEGI--PTETRLLDLGK---NRIK-TLNQDEFASFPHLEELELN 64

Query: 165 MNKLRTI-PNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTE 223
            N +  + P +  N   L  L L  N    +    F  L  L+ LD+  N +        
Sbjct: 65  ENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYM- 123

Query: 224 WSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSD--SLQQFYAYDCELKGSIPQEI-G 280
                 L N   LK L +  N L  I       FS   SL+Q     C L  SIP E   
Sbjct: 124 ---FQDLYN---LKSLEVGDNDLVYISH---RAFSGLNSLEQLTLEKCNLT-SIPTEALS 173

Query: 281 NLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDLCH 329
           +L+GLI LRL+  ++N     +  RL +L+ L +       ++  +  +
Sbjct: 174 HLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY 222

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 97.4 bits (243), Expect = 1e-23
 Identities = 51/206 (24%), Positives = 79/206 (38%), Gaps = 16/206 (7%)

Query: 44  SVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLS-LSK 102
           S +    F    +L ++ L SN L+  +       L  LEQL L  N     +  +    
Sbjct: 45  SHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG 103

Query: 103 CTQLQHLWLEHNKFTGRLPENI-GNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWL 161
             +L  L L+       L   +   L+ L+ L L     N+L   LP      L NL  L
Sbjct: 104 LGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQD---NALQ-ALPDDTFRDLGNLTHL 158

Query: 162 ALGMNKLRTIPNSI-TNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSS 220
            L  N++ ++P         L  L L +N  + + P+ F +L  L  L L  N L+   +
Sbjct: 159 FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT 218

Query: 221 TTEWSFLSSLTNCIYLKVLGLHSNQL 246
                 L+ L     L+ L L+ N  
Sbjct: 219 EA----LAPLRA---LQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 85.0 bits (211), Expect = 3e-19
 Identities = 54/260 (20%), Positives = 87/260 (33%), Gaps = 42/260 (16%)

Query: 63  SSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPE 122
               L  ++P  +     + +++ L  N        S   C  L  LWL  N    R+  
Sbjct: 19  PQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDA 73

Query: 123 NI-GNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSI-TNASE 180
                L+ L  L L     N+    +       L  L  L L    L+ +   +    + 
Sbjct: 74  AAFTGLALLEQLDLSD---NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA 130

Query: 181 LTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLG 240
           L  L L  N+   L  +TF +L  L+ L L  N +++            L +   L  L 
Sbjct: 131 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA----FRGLHS---LDRLL 183

Query: 241 LHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIP 300
           LH N+++ + P     F                       +L  L+ L L  N+L+    
Sbjct: 184 LHQNRVAHVHP---HAFR----------------------DLGRLMTLYLFANNLSALPT 218

Query: 301 TTVGRLQQLQGLFLFGNNLQ 320
             +  L+ LQ L L  N   
Sbjct: 219 EALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 67.7 bits (166), Expect = 4e-13
 Identities = 41/185 (22%), Positives = 64/185 (34%), Gaps = 18/185 (9%)

Query: 146 HLPSTLSVSLPNLKWLALGMNKLRTIP-NSITNASELTLLELGKNSFSGLVPNTFGNLRF 204
            +P  +       + + L  N++  +P  S      LT+L L  N  + +    F  L  
Sbjct: 25  AVPVGIP---AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL 81

Query: 205 LSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSD--SLQ 262
           L  LDL +N          +  L  L        L L    L  + P   G F    +LQ
Sbjct: 82  LEQLDLSDNAQLRSVDPATFHGLGRLHT------LHLDRCGLQELGP---GLFRGLAALQ 132

Query: 263 QFYAYDCELKGSIPQEI-GNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQG 321
             Y  D  L+ ++P +   +L  L  L L  N ++         L  L  L L  N +  
Sbjct: 133 YLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA- 190

Query: 322 SIPSD 326
            +   
Sbjct: 191 HVHPH 195

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 99.5 bits (248), Expect = 3e-23
 Identities = 54/294 (18%), Positives = 91/294 (30%), Gaps = 20/294 (6%)

Query: 44  SVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKC 103
             +T + F  +  L+++ L S     ++  +    LP+L  L L S+  +   P +    
Sbjct: 37  RTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGL 96

Query: 104 TQLQHLWLEHNKFTGRL--PENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWL 161
             L  L L     +  +       NL  L  L L     N +           L +LK +
Sbjct: 97  FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLS---KNQIRSLYLHPSFGKLNSLKSI 153

Query: 162 ALGMNKLRTIPNSITN---ASELTLLELGKNSFSGLVPNTFGNL------RFLSLLDLGN 212
               N++  +            L+   L  NS    V   +G          L +LD+  
Sbjct: 154 DFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSG 213

Query: 213 NYLTTRSSTTEWSFLS-----SLTNCIYLKVLGLHSNQLSGILPPLIGN-FSDSLQQFYA 266
           N  T   +    + +S     SL    ++   G   + +              S++    
Sbjct: 214 NGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDL 273

Query: 267 YDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQ 320
               +     +    L  L  L L  N +N         L  LQ L L  N L 
Sbjct: 274 SHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG 327

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 94.1 bits (234), Expect = 2e-21
 Identities = 51/288 (17%), Positives = 101/288 (35%), Gaps = 27/288 (9%)

Query: 51  FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQI-PLSLSKCTQLQHL 109
              +++ + + LS N +  ++       L  L+ L L S      I   +      L+ L
Sbjct: 20  PQVLNTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRIL 78

Query: 110 WLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSL-HGHLPSTLSVSLPNLKWLALGMNKL 168
            L  +K     P+    L  L  L L       L    L      +L  L  L L  N++
Sbjct: 79  DLGSSKIYFLHPDAFQGLFHLFELRL---YFCGLSDAVLKDGYFRNLKALTRLDLSKNQI 135

Query: 169 RTIP--NSITNASELTLLELGKNSFSGLVPNTFGNLRFLSL--LDLGNNYLTTRSSTTEW 224
           R++    S    + L  ++   N    +  +    L+  +L    L  N L +R S    
Sbjct: 136 RSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWG 195

Query: 225 SFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNG 284
             ++   N + L++L +  N  +  +    GNFS+++            S    +   + 
Sbjct: 196 KCMNPFRN-MVLEILDVSGNGWTVDIT---GNFSNAIS----------KSQAFSLILAHH 241

Query: 285 LIDLRLQDNDLNGTIPTTVGRLQQ--LQGLFLFGNNLQGSIPSDLCHW 330
           ++      +++      T   L +  ++ L L    +  S+ S +   
Sbjct: 242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF-SLNSRVFET 288

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 88.3 bits (219), Expect = 2e-19
 Identities = 60/305 (19%), Positives = 105/305 (34%), Gaps = 43/305 (14%)

Query: 44  SVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKC 103
             L    F  +  LK++ L+ N ++  + ++    L +L+ L L  N        +    
Sbjct: 279 FSLNSRVFETLKDLKVLNLAYNKIN-KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGL 337

Query: 104 TQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLAL 163
            ++ ++ L+ N       +    L KL++L L   A  ++H          +P++  + L
Sbjct: 338 PKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF---------IPSIPDIFL 388

Query: 164 GMNKLRTIPN----------------------SITNASELTLLELGKNSFSGLVPN-TFG 200
             NKL T+P                        +     L +L L +N FS    + T  
Sbjct: 389 SGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPS 448

Query: 201 NLRFLSLLDLGNNYLTTRSSTT-EWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSD 259
               L  L LG N L     T   W     L++   L+VL L+ N L+ + P +  + + 
Sbjct: 449 ENPSLEQLFLGENMLQLAWETELCWDVFEGLSH---LQVLYLNHNYLNSLPPGVFSHLT- 504

Query: 260 SLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNL 319
           +L+        L   +         L  L +  N L    P        L  L +  N  
Sbjct: 505 ALRGLSLNSNRLT-VLSHND-LPANLEILDISRNQLLAPNPDV---FVSLSVLDITHNKF 559

Query: 320 QGSIP 324
                
Sbjct: 560 ICECE 564

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 81.0 bits (200), Expect = 5e-17
 Identities = 56/290 (19%), Positives = 100/290 (34%), Gaps = 37/290 (12%)

Query: 56  SLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSK------------- 102
            L+++ +S N  +  +  +  N +   +   L                            
Sbjct: 205 VLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLA 264

Query: 103 CTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLA 162
            + ++HL L H             L  L+ L L   A+N ++  +       L NL+ L 
Sbjct: 265 RSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNL---AYNKIN-KIADEAFYGLDNLQVLN 320

Query: 163 LGMNKLRTIPNSI-TNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSST 221
           L  N L  + +S      ++  ++L KN  + +   TF  L  L  LDL +N LTT    
Sbjct: 321 LSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT---- 376

Query: 222 TEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKG-SIPQEIG 280
                   +     +  + L  N+L  +        + +    +  +  L+   I   + 
Sbjct: 377 --------IHFIPSIPDIFLSGNKLVTL-----PKINLTANLIHLSENRLENLDILYFLL 423

Query: 281 NLNGLIDLRLQDNDLNGTIPT-TVGRLQQLQGLFLFGNNLQGSIPSDLCH 329
            +  L  L L  N  +      T      L+ LFL  N LQ +  ++LC 
Sbjct: 424 RVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCW 473

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 76.4 bits (188), Expect = 2e-15
 Identities = 47/208 (22%), Positives = 76/208 (36%), Gaps = 17/208 (8%)

Query: 95  QIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVS 154
           Q+P  L+     + L L  N        +   L +L+ L LG          +      +
Sbjct: 18  QVPQVLNT---TERLLLSFNYIRTVTASSFPFLEQLQLLELG---SQYTPLTIDKEAFRN 71

Query: 155 LPNLKWLALGMNKLRTIPNSI-TNASELTLLELGKNSFS--GLVPNTFGNLRFLSLLDLG 211
           LPNL+ L LG +K+  +          L  L L     S   L    F NL+ L+ LDL 
Sbjct: 72  LPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLS 131

Query: 212 NNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSD-SLQQFYAYDCE 270
            N +    S         L +   LK +   SNQ+  +    +      +L  F      
Sbjct: 132 KNQIR---SLYLHPSFGKLNS---LKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANS 185

Query: 271 LKGSIPQEIGN-LNGLIDLRLQDNDLNG 297
           L   +  + G  +N   ++ L+  D++G
Sbjct: 186 LYSRVSVDWGKCMNPFRNMVLEILDVSG 213

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 57.9 bits (140), Expect = 2e-09
 Identities = 34/165 (20%), Positives = 61/165 (36%), Gaps = 13/165 (7%)

Query: 166 NKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWS 225
             L  +P  +        L L  N    +  ++F  L  L LL+LG+ Y           
Sbjct: 14  CNLTQVPQVLNT---TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDK---- 66

Query: 226 FLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQE--IGNLN 283
              +  N   L++L L S+++  + P         L +   Y C L  ++ ++    NL 
Sbjct: 67  --EAFRNLPNLRILDLGSSKIYFLHPDAFQGLF-HLFELRLYFCGLSDAVLKDGYFRNLK 123

Query: 284 GLIDLRLQDNDLNG-TIPTTVGRLQQLQGLFLFGNNLQGSIPSDL 327
            L  L L  N +    +  + G+L  L+ +    N +      +L
Sbjct: 124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHEL 168

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 97.1 bits (242), Expect = 5e-23
 Identities = 47/283 (16%), Positives = 93/283 (32%), Gaps = 39/283 (13%)

Query: 44  SVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQI----PLS 99
           + ++ +      +L+ + L+SN ++ ++  D  + L SLE L L  N     +       
Sbjct: 65  TYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYN----YLSNLSSSW 119

Query: 100 LSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLK 159
               + L  L L  N +   L E     S L  L +    +      +       L  L+
Sbjct: 120 FKPLSSLTFLNLLGNPYK-TLGET-SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLE 177

Query: 160 WLALGMNKLRTIP-NSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTR 218
            L +  + L++    S+ +   ++ L L       L+         +  L+L +  L T 
Sbjct: 178 ELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTF 237

Query: 219 SSTT-EWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQ 277
             +       +SL      + + +    L                            + +
Sbjct: 238 HFSELSTGETNSLIKKFTFRNVKITDESLF--------------------------QVMK 271

Query: 278 EIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQ 320
            +  ++GL++L    N L         RL  LQ ++L  N   
Sbjct: 272 LLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 81.3 bits (201), Expect = 2e-17
 Identities = 54/278 (19%), Positives = 96/278 (34%), Gaps = 34/278 (12%)

Query: 55  SSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHN 114
            ++K + LS+N ++  + N    R  +L+ LVL SNG       S S    L+HL L +N
Sbjct: 52  EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110

Query: 115 KFTGRLPENI-GNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMN-KLRTIP 172
             +  L  +    LS L  L L     N       ++L   L  L+ L +G       I 
Sbjct: 111 YLS-NLSSSWFKPLSSLTFLNLLG---NPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ 166

Query: 173 NSI-TNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLT 231
                  + L  LE+  +      P +  +++ +S L L                 SS+ 
Sbjct: 167 RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIF-VDVTSSVE 225

Query: 232 NCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQ 291
            C+ L+   L +   S +      +                              ++++ 
Sbjct: 226 -CLELRDTDLDTFHFSELSTGETNSLI----------------------KKFTFRNVKIT 262

Query: 292 DNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDLCH 329
           D  L   +   + ++  L  L    N L+ S+P  +  
Sbjct: 263 DESLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGIFD 298

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 56.7 bits (137), Expect = 3e-09
 Identities = 38/172 (22%), Positives = 63/172 (36%), Gaps = 14/172 (8%)

Query: 152 SVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLG 211
           S+S             L +IP+ +T    +  L+L  N  + +  +       L  L L 
Sbjct: 27  SLSCDRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLT 84

Query: 212 NNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCEL 271
           +N + T    +     SSL +   L+ L L  N LS +        S SL          
Sbjct: 85  SNGINTIEEDS----FSSLGS---LEHLDLSYNYLSNLSSSWFKPLS-SLTFLNLLGNPY 136

Query: 272 KGSIPQEI--GNLNGLIDLRLQDNDLNGTIPTTV-GRLQQLQGLFLFGNNLQ 320
           K ++ +     +L  L  LR+ + D    I       L  L+ L +  ++LQ
Sbjct: 137 K-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ 187

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 98.4 bits (245), Expect = 7e-23
 Identities = 59/283 (20%), Positives = 103/283 (36%), Gaps = 60/283 (21%)

Query: 53  NISSLKMIRLSSNSLSGSLPNDLC------------NRLP----SLEQLVLRSNGFFGQI 96
               L+ + +S N L+ SLP                  LP     L +L +  N     +
Sbjct: 79  LPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQL-TSL 136

Query: 97  PLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLP 156
           P+       LQ L +  N+    LP     L KL +       +N L     ++L +   
Sbjct: 137 PVLP---PGLQELSVSDNQLA-SLPALPSELCKLWAY------NNQL-----TSLPMLPS 181

Query: 157 NLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLT 216
            L+ L++  N+L ++P   +    L  L    N  + L P     L+    L +  N LT
Sbjct: 182 GLQELSVSDNQLASLPTLPSE---LYKLWAYNNRLTSL-PALPSGLKE---LIVSGNRLT 234

Query: 217 TRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIP 276
                   S     +    LK L +  N+L+  LP L       L     Y  +L   +P
Sbjct: 235 --------SLPVLPSE---LKELMVSGNRLT-SLPMLPSG----LLSLSVYRNQLT-RLP 277

Query: 277 QEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNL 319
           + + +L+    + L+ N L+     T+  L+++     +   +
Sbjct: 278 ESLIHLSSETTVNLEGNPLS---ERTLQALREITSAPGYSGPI 317

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 89.6 bits (222), Expect = 6e-20
 Identities = 48/228 (21%), Positives = 81/228 (35%), Gaps = 39/228 (17%)

Query: 98  LSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPN 157
           +          L +  +  T  LP+ +     + +LV+     N+L     ++L    P 
Sbjct: 34  MRACLNNGNAVLNVGESGLT-TLPDCLPA--HITTLVI---PDNNL-----TSLPALPPE 82

Query: 158 LKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTT 217
           L+ L +  N+L ++P       EL++          L          L  L +  N LT 
Sbjct: 83  LRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSG-------LCKLWIFGNQLT- 134

Query: 218 RSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQ 277
                  S          L+ L +  NQL+  LP L       L + +AY+ +L  S+P 
Sbjct: 135 -------SLPVLPPG---LQELSVSDNQLAS-LPALPSE----LCKLWAYNNQLT-SLPM 178

Query: 278 EIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPS 325
               L    +L + DN L  ++PT    L +L        +L      
Sbjct: 179 LPSGLQ---ELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALPSG 222

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 71.1 bits (174), Expect = 8e-14
 Identities = 34/162 (20%), Positives = 58/162 (35%), Gaps = 21/162 (12%)

Query: 53  NISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLE 112
             S L+ + +S N L+ SLP         L +L   +N     +P      + L+ L + 
Sbjct: 179 LPSGLQELSVSDNQLA-SLPTLPSE----LYKLWAYNNRL-TSLPALP---SGLKELIVS 229

Query: 113 HNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIP 172
            N+ T  LP     L +L        + N L     ++L +    L  L++  N+L  +P
Sbjct: 230 GNRLT-SLPVLPSELKEL------MVSGNRL-----TSLPMLPSGLLSLSVYRNQLTRLP 277

Query: 173 NSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNY 214
            S+ + S  T + L  N  S         +            
Sbjct: 278 ESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIR 319

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 95.5 bits (238), Expect = 1e-22
 Identities = 55/291 (18%), Positives = 106/291 (36%), Gaps = 50/291 (17%)

Query: 44  SVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKC 103
           + +    F N+ +L  + L +N +S  +       L  LE+L L  N    ++P  + K 
Sbjct: 65  TEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQL-KELPEKMPK- 121

Query: 104 TQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLH-GHLPSTLSVSLPNLKWLA 162
             LQ L +  N+ T         L+++  + LG    N L    + +     +  L ++ 
Sbjct: 122 -TLQELRVHENEITKVRKSVFNGLNQMIVVELG---TNPLKSSGIENGAFQGMKKLSYIR 177

Query: 163 LGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTT 222
           +    + TIP  +     LT L L  N  + +   +   L  L+ L L  N ++   + +
Sbjct: 178 IADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS 235

Query: 223 EWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNL 282
                  L N  +L+ L L++N+L                            +P  + + 
Sbjct: 236 -------LANTPHLRELHLNNNKLV--------------------------KVPGGLADH 262

Query: 283 NGLIDLRLQDNDLNG------TIPTTVGRLQQLQGLFLFGNNLQ-GSIPSD 326
             +  + L +N+++         P    +     G+ LF N +Q   I   
Sbjct: 263 KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPS 313

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 79.7 bits (197), Expect = 5e-17
 Identities = 50/233 (21%), Positives = 89/233 (38%), Gaps = 20/233 (8%)

Query: 96  IPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSL 155
           +P  L        L L++NK T     +  NL  L +L+L    +N +   +       L
Sbjct: 46  VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLIL---INNKIS-KISPGAFAPL 99

Query: 156 PNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYL 215
             L+ L L  N+L+ +P  +     L  L + +N  + +  + F  L  + +++LG N L
Sbjct: 100 VKLERLYLSKNQLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPL 157

Query: 216 TTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSI 275
              SS  E      +     L  + +    ++ I     G    SL + +    ++   +
Sbjct: 158 K--SSGIENGAFQGMKK---LSYIRIADTNITTIPQ---GLPP-SLTELHLDGNKIT-KV 207

Query: 276 PQEI-GNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDL 327
                  LN L  L L  N ++     ++     L+ L L  N L   +P  L
Sbjct: 208 DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGL 259

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 96.7 bits (241), Expect = 1e-22
 Identities = 54/236 (22%), Positives = 99/236 (41%), Gaps = 21/236 (8%)

Query: 44  SVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKC 103
            ++  N F ++  L++++LS N +  ++     N L +L  L L  N        +    
Sbjct: 77  QIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYL 135

Query: 104 TQLQHLWLEHNKFTGRLPENI-GNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLA 162
           ++L+ LWL +N     +P      +  LR L LG      L  ++       L NL++L 
Sbjct: 136 SKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGE--LKRLS-YISEGAFEGLSNLRYLN 191

Query: 163 LGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTT 222
           L M  LR IP ++T   +L  L+L  N  S + P +F  L  L  L +  + +       
Sbjct: 192 LAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNA 250

Query: 223 EWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAY------DCELK 272
                 +L +   L  + L  N L+ +LP  +      L++ + +      +C++ 
Sbjct: 251 ----FDNLQS---LVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPWNCNCDIL 298

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 91.0 bits (226), Expect = 1e-20
 Identities = 61/269 (22%), Positives = 94/269 (34%), Gaps = 22/269 (8%)

Query: 55  SSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHN 114
           +    +     +L   +P+ +     +   L L  N        S      L+ L L  N
Sbjct: 43  NQFSKVICVRKNLR-EVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN 98

Query: 115 KFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNS 174
                       L+ L +L L     N L   +P+   V L  LK L L  N + +IP+ 
Sbjct: 99  HIRTIEIGAFNGLANLNTLEL---FDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSY 154

Query: 175 I-TNASELTLLELGK-NSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTN 232
                  L  L+LG+    S +    F  L  L  L+L    L           + +LT 
Sbjct: 155 AFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE---------IPNLTP 205

Query: 233 CIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQE-IGNLNGLIDLRLQ 291
            I L  L L  N LS I P         LQ+ +    +++  I +    NL  L+++ L 
Sbjct: 206 LIKLDELDLSGNHLSAIRPGSFQGLM-HLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLA 263

Query: 292 DNDLNGTIPTTVGRLQQLQGLFLFGNNLQ 320
            N+L          L  L+ + L  N   
Sbjct: 264 HNNLTLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 72.9 bits (179), Expect = 2e-14
 Identities = 54/226 (23%), Positives = 84/226 (37%), Gaps = 24/226 (10%)

Query: 105 QLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALG 164
           Q   +          +P+ I   +  R L L     N +   +       L +L+ L L 
Sbjct: 44  QFSKVICVRKNLR-EVPDGI--STNTRLLNLHE---NQIQ-IIKVNSFKHLRHLEILQLS 96

Query: 165 MNKLRTIP-NSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTE 223
            N +RTI   +    + L  LEL  N  + +    F  L  L  L L NN + +  S   
Sbjct: 97  RNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPS--- 153

Query: 224 WSFLSSLTNCIYLKVLGL-HSNQLSGILPPLIGNFSD--SLQQFYAYDCELKGSIPQEIG 280
                +      L+ L L    +LS I     G F    +L+      C L+  IP  + 
Sbjct: 154 ----YAFNRIPSLRRLDLGELKRLSYISE---GAFEGLSNLRYLNLAMCNLR-EIP-NLT 204

Query: 281 NLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSD 326
            L  L +L L  N L+   P +   L  LQ L++  + +Q  I  +
Sbjct: 205 PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERN 249

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 95.9 bits (239), Expect = 2e-22
 Identities = 56/287 (19%), Positives = 106/287 (36%), Gaps = 30/287 (10%)

Query: 44  SVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKC 103
             +    F    +++ + +  N++   LP  +   +P L  LVL  N             
Sbjct: 82  EEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNT 140

Query: 104 TQLQHLWLEHNKFTGRLPENI-GNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLA 162
            +L  L + +N    R+ ++     + L++L L   + N L  H+  +L   +P+L    
Sbjct: 141 PKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQL---SSNRLT-HVDLSL---IPSLFHAN 192

Query: 163 LGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTT 222
           +  N L T+   I     +  L+   NS + +       L     L L +N LT      
Sbjct: 193 VSYNLLSTLAIPIA----VEELDASHNSINVVRGPVNVELTI---LKLQHNNLTD----- 240

Query: 223 EWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNL 282
                + L N   L  + L  N+L  I+          L++ Y  +  L  ++      +
Sbjct: 241 ----TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ-RLERLYISNNRLV-ALNLYGQPI 294

Query: 283 NGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDLCH 329
             L  L L  N L   +     +  +L+ L+L  N++  ++     H
Sbjct: 295 PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLSTHH 339

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 92.8 bits (231), Expect = 2e-21
 Identities = 55/277 (19%), Positives = 99/277 (35%), Gaps = 30/277 (10%)

Query: 44  SVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKC 103
             L  + F N+  L ++ L  N LS SLP  + +  P L  L + +N        +    
Sbjct: 106 RYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT 164

Query: 104 TQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLAL 163
           T LQ+L L  N+ T  +   +  +  L    + +   ++L              ++ L  
Sbjct: 165 TSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLSTLAI---------PIAVEELDA 212

Query: 164 GMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTE 223
             N +  +   +    ELT+L+L  N+ +        N   L  +DL  N L        
Sbjct: 213 SHNSINVVRGPVN--VELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMY--- 265

Query: 224 WSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLN 283
                       L+ L + +N+L  +   L G    +L+        L   + +     +
Sbjct: 266 ----HPFVKMQRLERLYISNNRLVAL--NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFD 318

Query: 284 GLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQ 320
            L +L L  N +  T+   +     L+ L L  N+  
Sbjct: 319 RLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 77.4 bits (191), Expect = 4e-16
 Identities = 38/234 (16%), Positives = 80/234 (34%), Gaps = 22/234 (9%)

Query: 96  IPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSL 155
           I  +L        + ++              L+  + +      ++++   LP+ L  S 
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTF---KNSTMR-KLPAALLDSF 68

Query: 156 PNLKWLALGMNKLRTIP-NSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNY 214
             ++ L L   ++  I   +   A  +  L +G N+   L P+ F N+  L++L L  N 
Sbjct: 69  RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND 128

Query: 215 LTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGS 274
           L++           +      L  L + +N L  I        + SLQ        L   
Sbjct: 129 LSSLPRGI----FHNTPK---LTTLSMSNNNLERI-EDDTFQATTSLQNLQLSSNRLT-H 179

Query: 275 IPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDLC 328
           +   +  +  L    +  N L     +T+     ++ L    N++   +   + 
Sbjct: 180 VD--LSLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRGPVN 225

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 75.9 bits (187), Expect = 2e-15
 Identities = 49/281 (17%), Positives = 92/281 (32%), Gaps = 38/281 (13%)

Query: 62  LSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLP 121
                +  +L  D       ++         F  I L        + +  +++       
Sbjct: 8   PEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITL-----NNQKIVTFKNSTMRKLPA 62

Query: 122 ENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSI-TNASE 180
             + +  ++  L L       +   + +        ++ L +G N +R +P  +  N   
Sbjct: 63  ALLDSFRQVELLNL---NDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 118

Query: 181 LTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLG 240
           LT+L L +N  S L    F N   L+ L + NN L      T             L+ L 
Sbjct: 119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT-------FQATTSLQNLQ 171

Query: 241 LHSNQLSGILPPLIGN---------------FSDSLQQFYAYDCELKGSIPQEIGNLNGL 285
           L SN+L+ +   LI +                  ++++  A    +   +   +     L
Sbjct: 172 LSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN-VVRGPV--NVEL 228

Query: 286 IDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSD 326
             L+LQ N+L  T    +     L  + L  N L+  I   
Sbjct: 229 TILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELE-KIMYH 266

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 26/164 (15%), Positives = 58/164 (35%), Gaps = 11/164 (6%)

Query: 165 MNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEW 224
             + + I +++        + +   +           L    ++   N+ +    +    
Sbjct: 7   QPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPA---- 62

Query: 225 SFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEI-GNLN 283
           + L S      +++L L+  Q+  I          ++Q+ Y     ++  +P  +  N+ 
Sbjct: 63  ALLDSFRQ---VELLNLNDLQIEEIDTYAFAYAH-TIQKLYMGFNAIR-YLPPHVFQNVP 117

Query: 284 GLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDL 327
            L  L L+ NDL+           +L  L +  NNL+  I  D 
Sbjct: 118 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDT 160

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 94.7 bits (236), Expect = 2e-22
 Identities = 51/239 (21%), Positives = 88/239 (36%), Gaps = 22/239 (9%)

Query: 44  SVLTKNCFYNISSLKMIRLSSNSLS-GSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSK 102
             L    F  ++ L  + LSSN LS     +       SL+ L L  NG    +  +   
Sbjct: 41  QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLG 99

Query: 103 CTQLQHLWLEHNKFTGRLPENI-GNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWL 161
             QL+HL  +H+        ++  +L  L  L + H           + +   L +L+ L
Sbjct: 100 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH---THTR-VAFNGIFNGLSSLEVL 155

Query: 162 ALGMNKLRT--IPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRS 219
            +  N  +   +P+  T    LT L+L +     L P  F +L  L +L++ +N   +  
Sbjct: 156 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD 215

Query: 220 STTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAY------DCELK 272
           +         L +   L+VL    N +       + +F  SL             CE +
Sbjct: 216 T----FPYKCLNS---LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ 267

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 87.4 bits (217), Expect = 6e-20
 Identities = 46/244 (18%), Positives = 88/244 (36%), Gaps = 21/244 (8%)

Query: 89  SNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSL-HGHL 147
           ++     +P  +   +    L LE NK           L++L  L L     N L     
Sbjct: 15  NSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSS---NGLSFKGC 69

Query: 148 PSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVP-NTFGNLRFLS 206
            S       +LK+L L  N + T+ ++     +L  L+   ++   +   + F +LR L 
Sbjct: 70  CSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 129

Query: 207 LLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSD--SLQQF 264
            LD+ + +     +       + L++   L+VL +  N       P    F++  +L   
Sbjct: 130 YLDISHTHTRVAFNGI----FNGLSS---LEVLKMAGNSFQENFLP--DIFTELRNLTFL 180

Query: 265 YAYDCELKGSIPQEI-GNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSI 323
               C+L+  +      +L+ L  L +  N+           L  LQ L    N++  + 
Sbjct: 181 DLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TS 238

Query: 324 PSDL 327
               
Sbjct: 239 KKQE 242

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 96.4 bits (240), Expect = 2e-22
 Identities = 56/240 (23%), Positives = 97/240 (40%), Gaps = 29/240 (12%)

Query: 44  SVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQI----PLS 99
            ++  + F ++  L++++L  NS+   +     N L SL  L L  N     +      +
Sbjct: 88  QMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDN----WLTVIPSGA 142

Query: 100 LSKCTQLQHLWLEHNKFTGRLPENI-GNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNL 158
               ++L+ LWL +N     +P      +  L  L LG      L  ++       L NL
Sbjct: 143 FEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGEL--KKLE-YISEGAFEGLFNL 198

Query: 159 KWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTR 218
           K+L LGM  ++ +P ++T    L  LE+  N F  + P +F  L  L  L + N+ ++  
Sbjct: 199 KYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLI 257

Query: 219 SSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAY------DCELK 272
                      L +   L  L L  N LS  LP  +      L + + +      DC++ 
Sbjct: 258 ERNA----FDGLAS---LVELNLAHNNLSS-LPHDLFTPLRYLVELHLHHNPWNCDCDIL 309

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 92.1 bits (229), Expect = 6e-21
 Identities = 56/269 (20%), Positives = 94/269 (34%), Gaps = 22/269 (8%)

Query: 55  SSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHN 114
           +    +  +   LS  +P  +     +   L L  N        +      L+ L L  N
Sbjct: 54  NQFSKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN 109

Query: 115 KFTGRLPENI-GNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPN 173
               ++       L+ L +L L     N L   +PS     L  L+ L L  N + +IP+
Sbjct: 110 SIR-QIEVGAFNGLASLNTLELFD---NWLT-VIPSGAFEYLSKLRELWLRNNPIESIPS 164

Query: 174 SI-TNASELTLLELGK-NSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLT 231
                   L  L+LG+      +    F  L  L  L+LG   +           + +LT
Sbjct: 165 YAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD---------MPNLT 215

Query: 232 NCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQ 291
             + L+ L +  N    I P      S SL++ +  + ++          L  L++L L 
Sbjct: 216 PLVGLEELEMSGNHFPEIRPGSFHGLS-SLKKLWVMNSQVSLIERNAFDGLASLVELNLA 274

Query: 292 DNDLNGTIPTTVGRLQQLQGLFLFGNNLQ 320
            N+L+         L+ L  L L  N   
Sbjct: 275 HNNLSSLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 64.4 bits (157), Expect = 1e-11
 Identities = 37/172 (21%), Positives = 63/172 (36%), Gaps = 14/172 (8%)

Query: 156 PNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYL 215
                +      L  +P  I   S    L L +N+   +  +TF +L  L +L LG N +
Sbjct: 54  NQFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111

Query: 216 TTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSI 275
                       + L +   L  L L  N L+ I        S  L++ +  +  ++ SI
Sbjct: 112 RQIEVGA----FNGLAS---LNTLELFDNWLTVIPSGAFEYLS-KLRELWLRNNPIE-SI 162

Query: 276 PQEI-GNLNGLIDLRLQDNDLNGTIPTTV-GRLQQLQGLFLFGNNLQGSIPS 325
           P      +  L+ L L +      I       L  L+ L L   N++  +P+
Sbjct: 163 PSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN 213

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 95.0 bits (236), Expect = 8e-22
 Identities = 55/284 (19%), Positives = 105/284 (36%), Gaps = 30/284 (10%)

Query: 44  SVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKC 103
             +    F    +++ + +  N++   LP  +   +P L  LVL  N             
Sbjct: 88  EEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNT 146

Query: 104 TQLQHLWLEHNKFTGRLPENI-GNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLA 162
            +L  L + +N    R+ ++     + L++L L   + N L  H+  +L   +P+L    
Sbjct: 147 PKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQL---SSNRLT-HVDLSL---IPSLFHAN 198

Query: 163 LGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTT 222
           +  N L T+   I     +  L+   NS + +       L     L L +N LT      
Sbjct: 199 VSYNLLSTLAIPIA----VEELDASHNSINVVRGPVNVELTI---LKLQHNNLTD----- 246

Query: 223 EWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNL 282
                + L N   L  + L  N+L  I+          L++ Y  +  L  ++      +
Sbjct: 247 ----TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ-RLERLYISNNRLV-ALNLYGQPI 300

Query: 283 NGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSD 326
             L  L L  N L   +     +  +L+ L+L  N++  ++   
Sbjct: 301 PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLS 342

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 75.0 bits (184), Expect = 5e-15
 Identities = 39/234 (16%), Positives = 80/234 (34%), Gaps = 22/234 (9%)

Query: 96  IPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSL 155
           I  +L        + ++              L+  + +      ++++   LP+ L  S 
Sbjct: 19  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTF---KNSTMR-KLPAALLDSF 74

Query: 156 PNLKWLALGMNKLRTIP-NSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNY 214
             ++ L L   ++  I   +   A  +  L +G N+   L P+ F N+  L++L L  N 
Sbjct: 75  RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND 134

Query: 215 LTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGS 274
           L++              N   L  L + +N L  I        + SLQ        L   
Sbjct: 135 LSSLPRGI-------FHNTPKLTTLSMSNNNLERI-EDDTFQATTSLQNLQLSSNRLT-H 185

Query: 275 IPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDLC 328
           +   +  +  L    +  N L     +T+     ++ L    N++   +   + 
Sbjct: 186 VD--LSLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRGPVN 231

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 64.9 bits (158), Expect = 7e-12
 Identities = 33/159 (20%), Positives = 57/159 (35%), Gaps = 11/159 (6%)

Query: 51  FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLW 110
                +++ +  S NS++  +   +      L  L L+ N         L     L  + 
Sbjct: 207 LAIPIAVEELDASHNSIN-VVRGPVN---VELTILKLQHNNLT-DTA-WLLNYPGLVEVD 260

Query: 111 LEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRT 170
           L +N+    +      + +L  L +   ++N L   L       +P LK L L  N L  
Sbjct: 261 LSYNELEKIMYHPFVKMQRLERLYI---SNNRLV-ALNLYGQ-PIPTLKVLDLSHNHLLH 315

Query: 171 IPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLD 209
           +  +      L  L L  NS   L  +T   L+ L+L  
Sbjct: 316 VERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSH 354

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.4 bits (102), Expect = 8e-05
 Identities = 26/164 (15%), Positives = 57/164 (34%), Gaps = 11/164 (6%)

Query: 165 MNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEW 224
             + + I +++        + +   +           L    ++   N+ +    +    
Sbjct: 13  QPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAAL-- 70

Query: 225 SFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEI-GNLN 283
             L S      +++L L+  Q+  I          ++Q+ Y     ++  +P  +  N+ 
Sbjct: 71  --LDSFRQ---VELLNLNDLQIEEIDTYAFAYAH-TIQKLYMGFNAIR-YLPPHVFQNVP 123

Query: 284 GLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDL 327
            L  L L+ NDL+           +L  L +  NNL+  I  D 
Sbjct: 124 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDT 166

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 94.4 bits (235), Expect = 1e-21
 Identities = 58/287 (20%), Positives = 99/287 (34%), Gaps = 20/287 (6%)

Query: 41  DPYSVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSL 100
           D Y     + F  ++++    L S ++              LE +  +            
Sbjct: 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQ------FPT 321

Query: 101 SKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHG-HLPSTLSVSLPNLK 159
            K   L+ L    NK      E   +L  L  L L   + N L      S       +LK
Sbjct: 322 LKLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDL---SRNGLSFKGCCSQSDFGTTSLK 376

Query: 160 WLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVP-NTFGNLRFLSLLDLGNNYLTTR 218
           +L L  N + T+ ++     +L  L+   ++   +   + F +LR L  LD+ + +    
Sbjct: 377 YLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV- 435

Query: 219 SSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQE 278
                    + L++   L+VL +  N       P I     +L       C+L+   P  
Sbjct: 436 ---AFNGIFNGLSS---LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 489

Query: 279 IGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPS 325
             +L+ L  L +  N L         RL  LQ ++L  N    S P 
Sbjct: 490 FNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 86.7 bits (215), Expect = 5e-19
 Identities = 57/292 (19%), Positives = 89/292 (30%), Gaps = 29/292 (9%)

Query: 55  SSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHN 114
            S K + LS N L   L +      P L+ L L           +    + L  L L  N
Sbjct: 28  FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 115 KFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTI--P 172
                       LS L+ LV       +L   L +     L  LK L +  N +++   P
Sbjct: 87  PIQSLALGAFSGLSSLQKLVA---VETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLP 142

Query: 173 NSITNASELTLLELGKNSFSGLVPNTFGNLRFLSL----LDLGNNYLTTRSSTTEWSFLS 228
              +N + L  L+L  N    +       L  + L    LDL  N +             
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN--------FIQP 194

Query: 229 SLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQE---IGNLNGL 285
                I L  L L +N  S  +          L+       E +     E      L GL
Sbjct: 195 GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254

Query: 286 IDLRLQDNDLNG------TIPTTVGRLQQLQGLFLFGNNLQGSIPSDLCHWG 331
            +L +++  L         I      L  +    L    ++  +     ++G
Sbjct: 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFG 305

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 86.3 bits (214), Expect = 6e-19
 Identities = 54/287 (18%), Positives = 93/287 (32%), Gaps = 15/287 (5%)

Query: 44  SVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKC 103
             +    + ++S L  + L+ N +  SL     + L SL++LV             +   
Sbjct: 65  QTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 123

Query: 104 TQLQHLWLEHNKFT-GRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKW-- 160
             L+ L + HN     +LPE   NL+ L  L L   + N +   +  T    L  +    
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL---SSNKIQ-SIYCTDLRVLHQMPLLN 179

Query: 161 --LALGMNKLRTIPNSITNASELTLLELGKNSFSG-LVPNTFGNLRFLSLLDLGNNYLTT 217
             L L +N +  I         L  L L  N  S  ++      L  L +  L       
Sbjct: 180 LSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239

Query: 218 RSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQ 277
             +  ++   S+L     L +       L   L  +I  F+            +     +
Sbjct: 240 EGNLEKFD-KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK 298

Query: 278 EIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIP 324
           +     G   L L +       PT   +L+ L+ L    N    +  
Sbjct: 299 DFSYNFGWQHLELVNCKFGQ-FPT--LKLKSLKRLTFTSNKGGNAFS 342

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 85.2 bits (211), Expect = 2e-18
 Identities = 54/293 (18%), Positives = 96/293 (32%), Gaps = 15/293 (5%)

Query: 44  SVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKC 103
             L    F++   L+++ LS   +  ++ +     L  L  L+L  N        + S  
Sbjct: 41  RHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 99

Query: 104 TQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLAL 163
           + LQ L              IG+L  L+ L +    HN +          +L NL+ L L
Sbjct: 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVA---HNLIQSFKLPEYFSNLTNLEHLDL 156

Query: 164 GMNKLRTIP-NSITNASELTL----LELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTR 218
             NK+++I    +    ++ L    L+L  N  + + P  F  +R L  L L NN+ +  
Sbjct: 157 SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLN 215

Query: 219 SSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQE 278
              T    L+ L     +     +   L       +     +L         L   +   
Sbjct: 216 VMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC-NLTIEEFRLAYLDYYLDDI 274

Query: 279 IGNLNGLIDLR---LQDNDLNGTIPTT-VGRLQQLQGLFLFGNNLQGSIPSDL 327
           I   N L ++    L    +      +     Q L+ +              L
Sbjct: 275 IDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSL 327

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 80.9 bits (200), Expect = 5e-17
 Identities = 49/291 (16%), Positives = 86/291 (29%), Gaps = 22/291 (7%)

Query: 44  SVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLS---- 99
           + +    F  I  L  + L +N  S ++       L  LE   L    F  +  L     
Sbjct: 190 NFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 248

Query: 100 --LSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPN 157
             L     L             L + I   + L ++        ++      + +    +
Sbjct: 249 SALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQH 308

Query: 158 LKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTT 217
           L+ +     +  T+         L  L    N        +  +L  L  LDL  N L+ 
Sbjct: 309 LELVNCKFGQFPTL-----KLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSF 361

Query: 218 RSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQ 277
           +   ++     S      LK L L  N +  +           L+        LK     
Sbjct: 362 KGCCSQ-----SDFGTTSLKYLDLSFNGVITM-SSNFLGLE-QLEHLDFQHSNLKQMSEF 414

Query: 278 EI-GNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDL 327
            +  +L  LI L +               L  L+ L + GN+ Q +   D+
Sbjct: 415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 79.8 bits (197), Expect = 1e-16
 Identities = 55/287 (19%), Positives = 92/287 (32%), Gaps = 25/287 (8%)

Query: 44  SVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGF-FGQIPLSLSK 102
             L    F  +SSL+ +     +L+ SL N     L +L++L +  N     ++P   S 
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 103 CTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLG-HKAHNSLHGHLPSTLSVSLPNLKWL 161
            T L+HL L  NK       ++  L ++  L L    + N ++   P         L  L
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF--KEIRLHKL 205

Query: 162 ALGMNKLRT--IPNSITNASELTLLELGKNSFSG------LVPNTFGNLRFLSLLDLGNN 213
            L  N      +   I   + L +  L    F           +    L  L++ +    
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265

Query: 214 YLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKG 273
           YL           +        +    L S  +  +      +++   Q     +C+   
Sbjct: 266 YLDYYLD----DIIDLFNCLTNVSSFSLVSVTIERVKD---FSYNFGWQHLELVNCKFG- 317

Query: 274 SIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQ 320
             P     L  L  L    N       + V  L  L+ L L  N L 
Sbjct: 318 QFPT--LKLKSLKRLTFTSNKGG-NAFSEVD-LPSLEFLDLSRNGLS 360

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 79.0 bits (195), Expect = 2e-16
 Identities = 49/301 (16%), Positives = 94/301 (31%), Gaps = 24/301 (7%)

Query: 51  FYNISSLKMIRLSSNSLSGSLPND---LCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQ 107
           F N+++L+ + LSSN +      D   L         L L  N     I     K  +L 
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN-PMNFIQPGAFKEIRLH 203

Query: 108 HLWLEHNKFTGRLPEN-IGNLSKLRSLVLGHKAHNSLH--GHLPSTLSVSLPNLKWLALG 164
            L L +N  +  + +  I  L+ L    L      +         +    L NL      
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263

Query: 165 MNKLRTIPNSITNA----SELTLLELGKNSFSGLVPNTF-GNLRFLSLLDLGNNYLTTRS 219
           +  L    + I +     + ++   L   +   +   ++    + L L++       T  
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLK 323

Query: 220 ---------STTEWSFLSSLTNCIYLKVLGLHSNQLSGI-LPPLIGNFSDSLQQFYAYDC 269
                    ++ +     S  +   L+ L L  N LS           + SL+       
Sbjct: 324 LKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383

Query: 270 ELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTV-GRLQQLQGLFLFGNNLQGSIPSDLC 328
            +  ++      L  L  L  Q ++L      +V   L+ L  L +   + + +      
Sbjct: 384 GVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 442

Query: 329 H 329
            
Sbjct: 443 G 443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 56.3 bits (136), Expect = 6e-09
 Identities = 30/129 (23%), Positives = 50/129 (38%), Gaps = 8/129 (6%)

Query: 49  NCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQI-PLSLSKCTQLQ 107
           + F ++ +L  + +S         N + N L SLE L +  N F     P   ++   L 
Sbjct: 415 SVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 473

Query: 108 HLWLEHNKFTGRLPENI-GNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMN 166
            L L   +   +L      +LS L+ L +   A N L   +P  +   L +L+ + L  N
Sbjct: 474 FLDLSQCQLE-QLSPTAFNSLSSLQVLNM---ASNQLK-SVPDGIFDRLTSLQKIWLHTN 528

Query: 167 KLRTIPNSI 175
                   I
Sbjct: 529 PWDCSCPRI 537

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 92.5 bits (230), Expect = 5e-21
 Identities = 53/306 (17%), Positives = 101/306 (33%), Gaps = 28/306 (9%)

Query: 44  SVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKC 103
           + L +  F  +  L+ +++   +    + N+    L SL  L L  N F      + +  
Sbjct: 43  AELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGL 102

Query: 104 TQLQHLWLEHNKFTG-RLPENI-GNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWL 161
             L+ L L      G  L  N    L+ L  LVL     N++    P++  +++     L
Sbjct: 103 ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVL---RDNNIKKIQPASFFLNMRRFHVL 159

Query: 162 ALGMNKLRTIPNSI-----------TNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDL 210
            L  NK+++I                  S +TL ++ +                ++ LDL
Sbjct: 160 DLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDL 219

Query: 211 GNNYLTTRSSTTEWSFLSSLT------NCIYLKVLGLHSNQLSGILP-PLIGNFSDSLQQ 263
             N      +   +  ++         +  Y                    G  +  ++ 
Sbjct: 220 SGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKT 279

Query: 264 FYAYDCELKGSIPQEI-GNLNGLIDLRLQDNDLNGTIPTTV-GRLQQLQGLFLFGNNLQG 321
                 ++  ++ + +  +   L  L L  N++N  I       L  L  L L  N L  
Sbjct: 280 CDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLG- 336

Query: 322 SIPSDL 327
           SI S +
Sbjct: 337 SIDSRM 342

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 77.1 bits (190), Expect = 6e-16
 Identities = 56/303 (18%), Positives = 102/303 (33%), Gaps = 38/303 (12%)

Query: 44  SVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSN----------GFF 93
           +VL+ N F  ++SL+M+ L  N++    P      +     L L  N            F
Sbjct: 118 AVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNF 177

Query: 94  GQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGH---------KAHNSLH 144
                +L + + +    +           N    + + +L L           +  +++ 
Sbjct: 178 QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIA 237

Query: 145 GHLPSTLSVSLPNLKWLALGMNKLRTIPNSITN---ASELTLLELGKNSFSGLVPNTFGN 201
           G    +L +S       + G    +   N       AS +   +L K+    L+ + F +
Sbjct: 238 GTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSH 297

Query: 202 LRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSD-- 259
              L  L L  N +              LT+   L  L L  N L  I       F +  
Sbjct: 298 FTDLEQLTLAQNEINKIDDNA----FWGLTH---LLKLNLSQNFLGSIDS---RMFENLD 347

Query: 260 SLQQFYAYDCELKGSIPQEI-GNLNGLIDLRLQDNDLNGTIPTTV-GRLQQLQGLFLFGN 317
            L+        ++ ++  +    L  L +L L  N L  ++P  +  RL  LQ ++L  N
Sbjct: 348 KLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 405

Query: 318 NLQ 320
              
Sbjct: 406 PWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 74.8 bits (184), Expect = 4e-15
 Identities = 38/229 (16%), Positives = 70/229 (30%), Gaps = 27/229 (11%)

Query: 104 TQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLAL 163
             + ++ L  N        +   L  L+ L +      +    + +     L +L  L L
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVE---QQTPGLVIRNNTFRGLSSLIILKL 86

Query: 164 GMNKLRTIPNSI-TNASELTLLELGKNSFSGLV--PNTFGNLRFLSLLDLGNNYLTTRSS 220
             N+   +        + L +L L + +  G V   N F  L  L +L L +N +     
Sbjct: 87  DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK---K 143

Query: 221 TTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIG 280
               SF  ++       VL L  N++  I    + NF                       
Sbjct: 144 IQPASFFLNMRR---FHVLDLTFNKVKSICEEDLLNFQGKHFTLL--------------- 185

Query: 281 NLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDLCH 329
            L+ +    + +  L         +   +  L L GN  + S+      
Sbjct: 186 RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFD 234

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 73.6 bits (181), Expect = 9e-15
 Identities = 59/307 (19%), Positives = 106/307 (34%), Gaps = 33/307 (10%)

Query: 45  VLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQI--PLSLSK 102
           V+  N F  +SSL +++L  N     L     N L +LE L L      G +        
Sbjct: 69  VIRNNTFRGLSSLIILKLDYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKP 127

Query: 103 CTQLQHLWLEHNKFTGRLPENI-GNLSKLRSLVLGHKAHNSLHGHLPST--LSVSLPNLK 159
            T L+ L L  N      P +   N+ +   L L     N +   +     L+    +  
Sbjct: 128 LTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDL---TFNKVK-SICEEDLLNFQGKHFT 183

Query: 160 WLALGMNKLRTIPNSITNASE---------LTLLELGKNSFSGLVPNTFGNLRFLS-LLD 209
            L L    L+ +        +         +T L+L  N F   +   F +    + +  
Sbjct: 184 LLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQS 243

Query: 210 LGNNYLTTRSSTTEWSFLSSLTNCIY-------LKVLGLHSNQLSGILPPLIGNFSDSLQ 262
           L  +      S+   +      N  +       +K   L  +++   L   + +    L+
Sbjct: 244 LILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLE 302

Query: 263 QFYAYDCELKGSIPQEI-GNLNGLIDLRLQDNDLNGTIPTTV-GRLQQLQGLFLFGNNLQ 320
           Q      E+   I       L  L+ L L  N L G+I + +   L +L+ L L  N+++
Sbjct: 303 QLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIR 360

Query: 321 GSIPSDL 327
            ++    
Sbjct: 361 -ALGDQS 366

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 53.6 bits (129), Expect = 3e-08
 Identities = 32/163 (19%), Positives = 61/163 (37%), Gaps = 14/163 (8%)

Query: 167 KLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSF 226
            L  +P    +   +  ++L  NS + L   +F  L+ L  L +              + 
Sbjct: 21  GLHQVPELPAH---VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGL---VIRNNT 74

Query: 227 LSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGS-IPQEI-GNLNG 284
              L++   L +L L  NQ   +        + +L+      C L G+ +       L  
Sbjct: 75  FRGLSS---LIILKLDYNQFLQLETGAFNGLA-NLEVLTLTQCNLDGAVLSGNFFKPLTS 130

Query: 285 LIDLRLQDNDLNGTIPTTV-GRLQQLQGLFLFGNNLQGSIPSD 326
           L  L L+DN++    P +    +++   L L  N ++ SI  +
Sbjct: 131 LEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK-SICEE 172

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 88.6 bits (220), Expect = 1e-19
 Identities = 50/302 (16%), Positives = 108/302 (35%), Gaps = 25/302 (8%)

Query: 44  SVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKC 103
           + +        ++L+++ L S+ ++ ++  D    L SLE L L  N             
Sbjct: 39  TYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPL 97

Query: 104 TQLQHLWLEHNKFTG-RLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLA 162
           + L++L L  N +    +     NL+ L++L +G   +      +       L +L  L 
Sbjct: 98  SSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIG---NVETFSEIRRIDFAGLTSLNELE 154

Query: 163 LGMNKLRTI-PNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSST 221
           +    LR     S+ +  ++  L L  +  + L+      L  +  L+L +  L      
Sbjct: 155 IKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLA----R 210

Query: 222 TEWSFLSSLTNCIYLKVLGLHSNQLSGILP---PLIGNFSDSLQQFYAYDCELKG----- 273
            ++S L        +K L    + L+         +  +   L +    DC L G     
Sbjct: 211 FQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFN 270

Query: 274 ----SIPQEIGNLNGLI--DLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDL 327
                +  E+G +  +    L +    L   + T    L++++ + +  + +   +P   
Sbjct: 271 PSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSF 329

Query: 328 CH 329
             
Sbjct: 330 SQ 331

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 86.7 bits (215), Expect = 5e-19
 Identities = 50/290 (17%), Positives = 102/290 (35%), Gaps = 18/290 (6%)

Query: 44  SVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFG-QIPLSLSK 102
           + +  + FY++ SL+ + LS N LS SL +     L SL+ L L  N +    +      
Sbjct: 63  NTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN 121

Query: 103 CTQLQHLWLEHNKFTGRLPEN-IGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWL 161
            T LQ L + + +    +       L+ L  L +      SL  +  S    S+ ++  L
Sbjct: 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEI---KALSLR-NYQSQSLKSIRDIHHL 177

Query: 162 ALGMNKLRTIPNSI-TNASELTLLELGKNSFSGLVPNTFG---NLRFLSLLDLGNNYLTT 217
            L +++   +        S +  LEL   + +    +          +  L    + LT 
Sbjct: 178 TLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD 237

Query: 218 RSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSD-------SLQQFYAYDCE 270
            S       L  +     ++      N L    P      S+       ++++ +     
Sbjct: 238 ESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFY 297

Query: 271 LKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQ 320
           L   +      L  +  + ++++ +     +    L+ L+ L L  N + 
Sbjct: 298 LFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMV 347

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 84.4 bits (209), Expect = 3e-18
 Identities = 52/293 (17%), Positives = 97/293 (33%), Gaps = 21/293 (7%)

Query: 44  SVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIP-LSLSK 102
           S L+ + F  +SSLK + L  N         L   L +L+ L + +   F +I  +  + 
Sbjct: 87  SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG 146

Query: 103 CTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLA 162
            T L  L ++         +++ ++  +  L L    H S    L    +  L ++++L 
Sbjct: 147 LTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL----HLSESAFLLEIFADILSSVRYLE 202

Query: 163 LGMNKLRTIPNSITNASE---------LTLLELGKNSFSGLV--PNTFGNLRFLSLLDLG 211
           L    L     S     E              L   SF+ L+        L  +   D  
Sbjct: 203 LRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT 262

Query: 212 NNYLTTRSSTTEWSFLS-SLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCE 270
            N L   + +             + ++ L +    L   L  +       +++    + +
Sbjct: 263 LNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLE-KVKRITVENSK 321

Query: 271 LKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTT---VGRLQQLQGLFLFGNNLQ 320
           +         +L  L  L L +N +           G    LQ L L  N+L+
Sbjct: 322 VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR 374

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 83.6 bits (207), Expect = 5e-18
 Identities = 52/269 (19%), Positives = 100/269 (37%), Gaps = 19/269 (7%)

Query: 55  SSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHN 114
            +  +    S S + S+P+ L     +++ L L  N         L  C  LQ L L+ +
Sbjct: 5   DASGVCDGRSRSFT-SIPSGL---TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS 60

Query: 115 KFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNS 174
           +      +   +L  L  L L   + N L   L S+    L +LK+L L  N  +T+  +
Sbjct: 61  RINTIEGDAFYSLGSLEHLDL---SDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVT 116

Query: 175 --ITNASELTLLELG-KNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLT 231
               N + L  L +G   +FS +    F  L  L+ L++    L    S +    L S+ 
Sbjct: 117 SLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS----LKSIR 172

Query: 232 NCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQ 291
           +   +  L LH ++ + +   +  +   S++     D  L       +        ++  
Sbjct: 173 D---IHHLTLHLSESAFL-LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKL 228

Query: 292 DNDLNGTIPTTVGRLQQLQGLFLFGNNLQ 320
               +     +   L +L    L  + ++
Sbjct: 229 AFRGSVLTDESFNELLKLLRYILELSEVE 257

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 79.8 bits (197), Expect = 9e-17
 Identities = 47/258 (18%), Positives = 86/258 (33%), Gaps = 27/258 (10%)

Query: 44  SVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKC 103
            V+++       +++ + +    L   L       L  ++++ + ++  F          
Sbjct: 275 DVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSL-LEKVKRITVENSKVFLVPCSFSQHL 333

Query: 104 TQLQHLWLEHNKFTGRLPEN---IGNLSKLRSLVLGHKAHNSLHGHLPSTLSV--SLPNL 158
             L+ L L  N       +N    G    L++LVL   + N L   +  T  +  +L NL
Sbjct: 334 KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVL---SQNHLR-SMQKTGEILLTLKNL 389

Query: 159 KWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTR 218
             L +  N    +P+S     ++  L L       +       L    +LD+ NN L   
Sbjct: 390 TSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLE---VLDVSNNNLD-- 444

Query: 219 SSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQE 278
                 SF   L     L+ L +  N+L  +      +    L        +LK      
Sbjct: 445 ------SFSLFLPR---LQELYISRNKLKTLPD---ASLFPVLLVMKISRNQLKSVPDGI 492

Query: 279 IGNLNGLIDLRLQDNDLN 296
              L  L  + L  N  +
Sbjct: 493 FDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 75.5 bits (186), Expect = 2e-15
 Identities = 42/292 (14%), Positives = 91/292 (31%), Gaps = 18/292 (6%)

Query: 44  SVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKC 103
           ++   + F N+++L+ +R+ +      +       L SL +L +++         SL   
Sbjct: 112 TLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI 171

Query: 104 TQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSV-------SLP 156
             + HL L  ++    L      LS +R L L                 V       +  
Sbjct: 172 RDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFR 231

Query: 157 NLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPN---TFGNLRFLSLLDLGNN 213
                    N+L  +   I   SE+   +   N      P+       L  +  + +   
Sbjct: 232 GSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRL 291

Query: 214 YLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKG 273
           ++       + S  +  +    +K + + ++++  +      +   SL+     +  +  
Sbjct: 292 HIPQFYLFYDLS--TVYSLLEKVKRITVENSKVFLVPCSFSQHLK-SLEFLDLSENLMVE 348

Query: 274 SIPQE---IGNLNGLIDLRLQDNDLN--GTIPTTVGRLQQLQGLFLFGNNLQ 320
              +     G    L  L L  N L         +  L+ L  L +  N   
Sbjct: 349 EYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH 400

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 85.8 bits (213), Expect = 3e-19
 Identities = 55/284 (19%), Positives = 94/284 (33%), Gaps = 50/284 (17%)

Query: 44  SVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKC 103
           S L K+ F  +  L  + L +N +S  +     + L  L++L +  N    +IP +L   
Sbjct: 67  SELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKN-HLVEIPPNLPS- 123

Query: 104 TQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLAL 163
             L  L +  N+           L  +  + +G    N L        +     L +L +
Sbjct: 124 -SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMG---GNPLENSGFEPGAFDGLKLNYLRI 179

Query: 164 GMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTE 223
              KL  IP  +     L  L L  N    +          L  L LG+N +    + + 
Sbjct: 180 SEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGS- 236

Query: 224 WSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLN 283
              LS L     L+ L L +N+LS                           +P  + +L 
Sbjct: 237 ---LSFLPT---LRELHLDNNKLS--------------------------RVPAGLPDLK 264

Query: 284 GLIDLRLQDNDLNGTIPTTV-------GRLQQLQGLFLFGNNLQ 320
            L  + L  N++   +            +     G+ LF N + 
Sbjct: 265 LLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 76.2 bits (188), Expect = 8e-16
 Identities = 51/233 (21%), Positives = 91/233 (39%), Gaps = 21/233 (9%)

Query: 96  IPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSL 155
           +P  +S       L L++N  +    ++   L  L +LVL    +N +   +       L
Sbjct: 48  VPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVL---VNNKIS-KIHEKAFSPL 101

Query: 156 PNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYL 215
             L+ L +  N L  IP ++   S L  L +  N    +    F  LR ++ +++G N L
Sbjct: 102 RKLQKLYISKNHLVEIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPL 159

Query: 216 TTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSI 275
              +S  E      L     L  L +   +L+GI          +L + +    +++ +I
Sbjct: 160 E--NSGFEPGAFDGLK----LNYLRISEAKLTGIPK---DLPE-TLNELHLDHNKIQ-AI 208

Query: 276 PQEI-GNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDL 327
             E     + L  L L  N +      ++  L  L+ L L  N L   +P+ L
Sbjct: 209 ELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGL 260

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 74.7 bits (184), Expect = 2e-15
 Identities = 43/183 (23%), Positives = 67/183 (36%), Gaps = 15/183 (8%)

Query: 44  SVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKC 103
             + K  F  + ++  I +  N L  S           L  L +        IP  L   
Sbjct: 136 RKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEA-KLTGIPKDLP-- 192

Query: 104 TQLQHLWLEHNKFTGRLPENI-GNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLA 162
             L  L L+HNK    +        SKL  L LGH   N +   + +     LP L+ L 
Sbjct: 193 ETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGH---NQIR-MIENGSLSFLPTLRELH 247

Query: 163 LGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRF------LSLLDLGNNYLT 216
           L  NKL  +P  + +   L ++ L  N+ + +  N F  + F       + + L NN + 
Sbjct: 248 LDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307

Query: 217 TRS 219
              
Sbjct: 308 YWE 310

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 84.7 bits (210), Expect = 2e-18
 Identities = 46/271 (16%), Positives = 87/271 (32%), Gaps = 42/271 (15%)

Query: 79  LPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHK 138
              L++ +  S+    ++P+           +   +++    P   G   ++    L   
Sbjct: 10  NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC 68

Query: 139 AHNS-----LHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSG 193
                    L+    S+L    P+L+ L    N L  +P    +   L +      + S 
Sbjct: 69  LDRQAHELELNNLGLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSD 128

Query: 194 LVPN---------------TFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKV 238
           L P                   N  FL ++D+ NN L                +   L+ 
Sbjct: 129 LPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK--------KLPDLPPS---LEF 177

Query: 239 LGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGT 298
           +   +NQL  +  P + N    L   YA +  LK  +P    +L     +   +N L   
Sbjct: 178 IAAGNNQLEEL--PELQNLP-FLTAIYADNNSLK-KLPDLPLSLE---SIVAGNNIL--E 228

Query: 299 IPTTVGRLQQLQGLFLFGNNLQGSIPSDLCH 329
               +  L  L  ++   N L+ ++P     
Sbjct: 229 ELPELQNLPFLTTIYADNNLLK-TLPDLPPS 258

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 83.9 bits (208), Expect = 3e-18
 Identities = 61/287 (21%), Positives = 97/287 (33%), Gaps = 50/287 (17%)

Query: 51  FYNISSLKMIRLSSNSLSGSLPNDLCN------------RLPSLEQLVLRSNGFFGQIPL 98
             N+ S      + +    + P                       +L L + G    +P 
Sbjct: 30  AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-LSSLPE 88

Query: 99  SLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNL 158
                  L+ L    N  T  LPE   +L  L                    LS   P L
Sbjct: 89  LP---PHLESLVASCNSLT-ELPELPQSLKSLLVDNNNL-----------KALSDLPPLL 133

Query: 159 KWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTR 218
           ++L +  N+L  +P  + N+S L ++++  NS   L P+   +L F   +  GNN L   
Sbjct: 134 EYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKL-PDLPPSLEF---IAAGNNQLEE- 187

Query: 219 SSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQE 278
                   L  L N  +L  +   +N L   LP L  +    L+   A +  L      E
Sbjct: 188 --------LPELQNLPFLTAIYADNNSLKK-LPDLPLS----LESIVAGNNIL--EELPE 232

Query: 279 IGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPS 325
           + NL  L  +   +N L  T+P     L+ L     +  +L     S
Sbjct: 233 LQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDLPELPQS 278

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 80.4 bits (199), Expect = 4e-17
 Identities = 59/276 (21%), Positives = 99/276 (35%), Gaps = 50/276 (18%)

Query: 54  ISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEH 113
             SL+ I   +N L   LP      LP L  +   +N     +         L+ +   +
Sbjct: 172 PPSLEFIAAGNNQLE-ELPE--LQNLPFLTAIYADNN----SLKKLPDLPLSLESIVAGN 224

Query: 114 NKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPN 173
           N     LPE + NL  L ++   +   N L      TL    P+L+ L +  N L  +P 
Sbjct: 225 NILE-ELPE-LQNLPFLTTIYADN---NLL-----KTLPDLPPSLEALNVRDNYLTDLPE 274

Query: 174 SITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNC 233
              + + L + E   +  S L PN       L  L+  +N +         S      + 
Sbjct: 275 LPQSLTFLDVSENIFSGLSELPPN-------LYYLNASSNEIR--------SLCDLPPS- 318

Query: 234 IYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDN 293
             L+ L + +N+L   LP L       L++  A    L   +P+   NL     L ++ N
Sbjct: 319 --LEELNVSNNKLI-ELPALPPR----LERLIASFNHLA-EVPELPQNLK---QLHVEYN 367

Query: 294 DLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDLCH 329
            L    P     ++ L+      N+    +P    +
Sbjct: 368 PLR-EFPDIPESVEDLR-----MNSHLAEVPELPQN 397

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 78.1 bits (193), Expect = 3e-16
 Identities = 55/293 (18%), Positives = 92/293 (31%), Gaps = 55/293 (18%)

Query: 51  FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLW 110
             N+  L  I   +NSL   LP+   +    LE +V  +N    +    L     L  ++
Sbjct: 191 LQNLPFLTAIYADNNSLK-KLPDLPLS----LESIVAGNNIL--EELPELQNLPFLTTIY 243

Query: 111 LEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLP---------STLSVSLPNLKWL 161
            ++N     LP+   +L  L            L   L          S LS   PNL +L
Sbjct: 244 ADNNLLK-TLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYL 302

Query: 162 ALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSST 221
               N++R++ +   +   L  L +  N    L P     L  L       N+L      
Sbjct: 303 NASSNEIRSLCDLPPS---LEELNVSNNKLIEL-PALPPRLERL---IASFNHLA----- 350

Query: 222 TEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSD---------------SLQQFYA 266
                     N   LK L +  N L    P +  +  D               +L+Q + 
Sbjct: 351 ---EVPELPQN---LKQLHVEYNPLR-EFPDIPESVEDLRMNSHLAEVPELPQNLKQLHV 403

Query: 267 YDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNL 319
               L+   P    ++    DLR+    +            +L+      ++ 
Sbjct: 404 ETNPLR-EFPDIPESVE---DLRMNSERVVDPYEFAHETTDKLEDDVFEHHHH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 30/164 (18%), Positives = 56/164 (34%), Gaps = 25/164 (15%)

Query: 53  NISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLE 112
              SL+ + +S+N L   LP         LE+L+   N    ++P        L+ L +E
Sbjct: 315 LPPSLEELNVSNNKLI-ELPALPPR----LERLIASFN-HLAEVPELPQN---LKQLHVE 365

Query: 113 HNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIP 172
           +N      P+   ++  LR        ++ L     + +     NLK L +  N LR  P
Sbjct: 366 YNPLR-EFPDIPESVEDLRM-------NSHL-----AEVPELPQNLKQLHVETNPLREFP 412

Query: 173 NSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLT 216
           +   +   +  L +                  L      +++  
Sbjct: 413 DIPES---VEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 56.9 bits (138), Expect = 3e-09
 Identities = 42/218 (19%), Positives = 72/218 (33%), Gaps = 46/218 (21%)

Query: 49  NCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQH 108
               +++ L +     + LS   PN        L  L   SN    +I         L+ 
Sbjct: 274 ELPQSLTFLDVSENIFSGLSELPPN--------LYYLNASSN----EIRSLCDLPPSLEE 321

Query: 109 LWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKL 168
           L + +NK    LP     L +L +      + N L     + +     NLK L +  N L
Sbjct: 322 LNVSNNKLI-ELPALPPRLERLIA------SFNHL-----AEVPELPQNLKQLHVEYNPL 369

Query: 169 RTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLS 228
           R  P+   +  +L +     NS    VP    NL+    L +  N L             
Sbjct: 370 REFPDIPESVEDLRM-----NSHLAEVPELPQNLKQ---LHVETNPLR------------ 409

Query: 229 SLTNCIY-LKVLGLHSNQLSGILPPLIGNFSDSLQQFY 265
              +    ++ L ++S ++           +D L+   
Sbjct: 410 EFPDIPESVEDLRMNSERVVD-PYEFAHETTDKLEDDV 446

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 56.5 bits (137), Expect = 4e-09
 Identities = 30/193 (15%), Positives = 56/193 (29%), Gaps = 40/193 (20%)

Query: 152 SVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLG 211
           +VS   L+      + L  +P    N    T      + +    P   G  R +++  L 
Sbjct: 7   NVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66

Query: 212 NNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCEL 271
           +                          L L++  LS  LP L  +    L+   A    L
Sbjct: 67  DCLDRQ------------------AHELELNNLGLS-SLPELPPH----LESLVASCNSL 103

Query: 272 KGSIPQEIGNLNGLIDLRLQDNDLNGTIPT---------------TVGRLQQLQGLFLFG 316
              +P+   +L  L+        L+   P                 +     L+ + +  
Sbjct: 104 T-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDN 162

Query: 317 NNLQGSIPSDLCH 329
           N+L+  +P     
Sbjct: 163 NSLK-KLPDLPPS 174

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 78.9 bits (195), Expect = 4e-17
 Identities = 48/211 (22%), Positives = 81/211 (38%), Gaps = 27/211 (12%)

Query: 44  SVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQI----PLS 99
             L    F++   L+++ LS   +  ++ +     L  L  L+L  N     I      +
Sbjct: 41  RHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN----PIQSLALGA 95

Query: 100 LSKCTQLQHLWLEHNKFTGRLPENI-GNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNL 158
            S  + LQ L          L     G+L  L+ L +    HN +          +L NL
Sbjct: 96  FSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVA---HNLIQSFKLPEYFSNLTNL 151

Query: 159 KWLALGMNKLRTIPNSI-TNASELTL----LELGKNSFSGLVPNTFGNLRFLSLLDLGNN 213
           + L L  NK+++I  +      ++ L    L+L  N  + + P  F  +R L  L L  N
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTN 210

Query: 214 YLTTRSSTTEWSFLSSLTNCIYLKVLGLHSN 244
            L +            LT+   L+ + LH+N
Sbjct: 211 QLKSVPDGI----FDRLTS---LQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 74.2 bits (183), Expect = 2e-15
 Identities = 46/225 (20%), Positives = 83/225 (36%), Gaps = 34/225 (15%)

Query: 104 TQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLAL 163
              ++L L  N        +  +  +L+ L L       +   +      SL +L  L L
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLS---RCEIQ-TIEDGAYQSLSHLSTLIL 83

Query: 164 GMNKLRTIPNSI-TNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTT 222
             N ++++     +  S L  L   + + + L     G+L+ L  L++ +N +    S  
Sbjct: 84  TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ---SFK 140

Query: 223 EWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNL 282
              + S+LTN   L+ L L SN++  I      +    L Q       +           
Sbjct: 141 LPEYFSNLTN---LEHLDLSSNKIQSIYC---TDL-RVLHQ-------MPLLNLS----- 181

Query: 283 NGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDL 327
                L L  N +N  I     +  +L+ L L  N L+ S+P  +
Sbjct: 182 -----LDLSLNPMN-FIQPGAFKEIRLKELALDTNQLK-SVPDGI 219

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 79.1 bits (195), Expect = 1e-16
 Identities = 55/313 (17%), Positives = 104/313 (33%), Gaps = 13/313 (4%)

Query: 15  ASLAMTTVKNITTDQSALLAFKAHIADPYSVLTKNCFYNISSLKMIRLSSNSLSGSLPND 74
             L     +++         F   +      +      NI  +      S  LS      
Sbjct: 158 EGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQ 217

Query: 75  LCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLS--KLRS 132
              +L +L    + +        L L   T + +  + + K  G+L     + S   L++
Sbjct: 218 TNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKA 277

Query: 133 LVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIP-NSITNASELTLLELGKNSF 191
           L +     +       S +     N+      ++  R +     +  S    L+   N  
Sbjct: 278 LSIHQVVSDVFGF-PQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLL 336

Query: 192 SGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILP 251
           +  V    G+L  L  L L  N L   S        + + +   L+ L +  N +S    
Sbjct: 337 TDTVFENCGHLTELETLILQMNQLKELSKIA--EMTTQMKS---LQQLDISQNSVSYDEK 391

Query: 252 PLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQG 311
               +++ SL         L  +I + +     +  L L  N +  +IP  V +L+ LQ 
Sbjct: 392 KGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQE 448

Query: 312 LFLFGNNLQGSIP 324
           L +  N L+ S+P
Sbjct: 449 LNVASNQLK-SVP 460

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 77.6 bits (191), Expect = 6e-16
 Identities = 40/173 (23%), Positives = 64/173 (36%), Gaps = 10/173 (5%)

Query: 44  SVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGF--FGQIPLSLS 101
            ++   C   IS    +  S+N L+     + C  L  LE L+L+ N      +I    +
Sbjct: 313 RMVHMLCPSKISPFLHLDFSNNLLT-DTVFENCGHLTELETLILQMNQLKELSKIAEMTT 371

Query: 102 KCTQLQHLWLEHNKFTGRLPENI-GNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKW 160
           +   LQ L +  N  +    +        L SL +     N L   +   L    P +K 
Sbjct: 372 QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS---NILTDTIFRCL---PPRIKV 425

Query: 161 LALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNN 213
           L L  NK+++IP  +     L  L +  N    +    F  L  L  + L  N
Sbjct: 426 LDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 71.8 bits (176), Expect = 5e-14
 Identities = 56/321 (17%), Positives = 102/321 (31%), Gaps = 21/321 (6%)

Query: 5   DITGLLRCFMASLAMTTVKNITTDQSALLAFKAHIADPYSVLTKNCFYNISSLKMIRLSS 64
           +   +L   + ++A   + NI            +     + L  N   +  +L  I  + 
Sbjct: 177 EFHFILDVSVKTVANLELSNIKCVLEDNKCS--YFLSILAKLQTNPKLSNLTLNNIETTW 234

Query: 65  NSLSGSLPNDLCNRLP--SLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPE 122
           NS    L       +   S+  + L+    F     S +    L    +  + F      
Sbjct: 235 NSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSY 294

Query: 123 NIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSI-TNASEL 181
                S +            +H   PS     +     L    N L         + +EL
Sbjct: 295 IYEIFSNMNIKNFTVSGTRMVHMLCPS----KISPFLHLDFSNNLLTDTVFENCGHLTEL 350

Query: 182 TLLELGKNSFSGL--VPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVL 239
             L L  N    L  +      ++ L  LD+  N ++      + S+  SL        L
Sbjct: 351 ETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLL------SL 404

Query: 240 GLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTI 299
            + SN L+  +          ++    +  ++K SIP+++  L  L +L +  N L    
Sbjct: 405 NMSSNILTDTIF---RCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVP 460

Query: 300 PTTVGRLQQLQGLFLFGNNLQ 320
                RL  LQ ++L  N   
Sbjct: 461 DGIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 70.3 bits (172), Expect = 1e-13
 Identities = 50/292 (17%), Positives = 98/292 (33%), Gaps = 17/292 (5%)

Query: 51  FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKC--TQLQH 108
           F N+S LK + LS+  L  S    + +   S   LVL       + P  L       L  
Sbjct: 111 FGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHI 170

Query: 109 LWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKL 168
           ++  + +F   L  ++  ++ L    +     ++   +  S L+    N K   L +N +
Sbjct: 171 VFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNI 230

Query: 169 RTIPNSIT------NASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTT 222
            T  NS          + +    +      G +     +    SL  L  + + +     
Sbjct: 231 ETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGF 290

Query: 223 EWSFL-SSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGN 281
             S++    +N   + +     +    +        S         +  L  ++ +  G+
Sbjct: 291 PQSYIYEIFSN---MNIKNFTVSGTRMVHMLCPSKIS-PFLHLDFSNNLLTDTVFENCGH 346

Query: 282 LNGLIDLRLQDNDLNGTIPTTVG---RLQQLQGLFLFGNNLQGSIPSDLCHW 330
           L  L  L LQ N L   +        +++ LQ L +  N++        C W
Sbjct: 347 LTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSW 397

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 61.4 bits (149), Expect = 1e-10
 Identities = 48/289 (16%), Positives = 91/289 (31%), Gaps = 21/289 (7%)

Query: 44  SVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKC 103
           S L  +   ++S L+++ +S N +   L   +      LE L L  N       +S    
Sbjct: 34  SELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKLVK---ISCHPT 89

Query: 104 TQLQHLWLEHNKFTGRLPEN--IGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWL 161
             L+HL L  N F   LP     GN+S+L+ L L       L       ++    +   L
Sbjct: 90  VNLKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLS---TTHLEKSSVLPIAHLNISKVLL 145

Query: 162 ALGMNKLRTIPN---SITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTR 218
            LG               N   L ++      F  ++  +   +  L L ++       +
Sbjct: 146 VLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNK 205

Query: 219 SSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSD--SLQQFYAYDCELKGSIP 276
            S          TN   L  L L++ + +      I       ++  F   + +L+G + 
Sbjct: 206 CSYFLSILAKLQTNP-KLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLD 264

Query: 277 QEIG-----NLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQ 320
                    +L  L   ++  +               +       +  +
Sbjct: 265 FRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR 313

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 59.9 bits (145), Expect = 3e-10
 Identities = 45/272 (16%), Positives = 78/272 (28%), Gaps = 17/272 (6%)

Query: 62  LSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLP 121
            S N L   +P DL         L +  N         +   ++L+ L + HN+      
Sbjct: 7   RSKNGLI-HVPKDL---SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDI 62

Query: 122 ENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNS--ITNAS 179
                  +L  L L   +HN L   +         NLK L L  N    +P      N S
Sbjct: 63  SVFKFNQELEYLDL---SHNKLV-KISCH---PTVNLKHLDLSFNAFDALPICKEFGNMS 115

Query: 180 ELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVL 239
           +L  L L              +L    +L +       +         ++ +  I     
Sbjct: 116 QLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTN 175

Query: 240 GLHSNQLSGILPPLIGN-FSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGT 298
                 L   +  +     S+         C    SI  ++     L +L L + +    
Sbjct: 176 KEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWN 235

Query: 299 IPTTVGRLQ---QLQGLFLFGNNLQGSIPSDL 327
               + +L     +    +    LQG +    
Sbjct: 236 SFIRILQLVWHTTVWYFSISNVKLQGQLDFRD 267

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 51.0 bits (122), Expect = 2e-07
 Identities = 35/178 (19%), Positives = 53/178 (29%), Gaps = 17/178 (9%)

Query: 156 PNLKWLALGMNKLRTIPNS-ITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNY 214
                L +  N +  +  S I + S+L +L +  N    L  + F   + L  LDL +N 
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 215 LTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSD--SLQQFYAYDCELK 272
           L   S            N   LK L L  N    +  P+   F +   L+        L+
Sbjct: 81  LVKISC-------HPTVN---LKHLDLSFNAFDAL--PICKEFGNMSQLKFLGLSTTHLE 128

Query: 273 GSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDLCHW 330
            S    I +LN    L +               LQ      L            +   
Sbjct: 129 KSSVLPIAHLNISKVLLVLGETYGEKEDP--EGLQDFNTESLHIVFPTNKEFHFILDV 184

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 76.7 bits (189), Expect = 3e-16
 Identities = 48/222 (21%), Positives = 77/222 (34%), Gaps = 26/222 (11%)

Query: 76  CNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVL 135
            +++ S  ++          +P  L        L L  N         +   ++L  L L
Sbjct: 6   VSKVASHLEVNCDKRNL-TALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 136 GHKAHNSLHGHLPSTLSV--SLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSG 193
                  L     + L V  +LP L  L L  N+L+++P        LT+L++  N  + 
Sbjct: 63  DR---AEL-----TKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS 114

Query: 194 LVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPL 253
           L       L  L  L L  N L T         L+       L+ L L +N L+  LP  
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGL----LTPTPK---LEKLSLANNNLTE-LPA- 165

Query: 254 IGNFSD--SLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDN 293
            G  +   +L      +  L  +IP+     + L    L  N
Sbjct: 166 -GLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 75.5 bits (186), Expect = 9e-16
 Identities = 43/164 (26%), Positives = 59/164 (35%), Gaps = 9/164 (5%)

Query: 55  SSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHN 114
               ++ LS N L  +           L QL L       ++ +       L  L L HN
Sbjct: 31  KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAE-LTKLQVD-GTLPVLGTLDLSHN 87

Query: 115 KFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNS 174
           +    LP     L  L  L +     N L   LP      L  L+ L L  N+L+T+P  
Sbjct: 88  QLQ-SLPLLGQTLPALTVLDVS---FNRLT-SLPLGALRGLGELQELYLKGNELKTLPPG 142

Query: 175 I-TNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTT 217
           + T   +L  L L  N+ + L       L  L  L L  N L T
Sbjct: 143 LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT 186

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 60.9 bits (148), Expect = 8e-11
 Identities = 42/175 (24%), Positives = 63/175 (36%), Gaps = 18/175 (10%)

Query: 155 LPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNY 214
           + +   +      L  +P  +    + T+L L +N        T      L+ L+L    
Sbjct: 9   VASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66

Query: 215 LTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGS 274
           LT          L        L  L L  NQL   LP L      +L         L  S
Sbjct: 67  LTK---------LQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLP-ALTVLDVSFNRLT-S 114

Query: 275 IPQEI-GNLNGLIDLRLQDNDLNGTIPTTV-GRLQQLQGLFLFGNNLQGSIPSDL 327
           +P      L  L +L L+ N+L  T+P  +     +L+ L L  NNL   +P+ L
Sbjct: 115 LPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGL 167

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 35/143 (24%), Positives = 52/143 (36%), Gaps = 37/143 (25%)

Query: 51  FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQI----PLSLSKCTQL 106
              + +L ++ +S N L+ SLP      L  L++L L+ N    ++    P  L+   +L
Sbjct: 96  GQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGN----ELKTLPPGLLTPTPKL 150

Query: 107 QHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMN 166
           + L L +N  T                             LP+ L   L NL  L L  N
Sbjct: 151 EKLSLANNNLT----------------------------ELPAGLLNGLENLDTLLLQEN 182

Query: 167 KLRTIPNSITNASELTLLELGKN 189
            L TIP     +  L    L  N
Sbjct: 183 SLYTIPKGFFGSHLLPFAFLHGN 205

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 77.8 bits (191), Expect = 5e-16
 Identities = 48/243 (19%), Positives = 83/243 (34%), Gaps = 27/243 (11%)

Query: 78  RLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGH 137
                 +  L+       +  +  +   +  +   ++     + + I  L  +  L L  
Sbjct: 19  AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNG 74

Query: 138 KAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPN 197
                +       L+ +L NL WL L  NK++ + + + +  +L  L L  N  S +   
Sbjct: 75  NKLTDI-----KPLT-NLKNLGWLFLDENKIKDLSS-LKDLKKLKSLSLEHNGISDING- 126

Query: 198 TFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNF 257
              +L  L  L LGNN +T          ++ L+    L  L L  NQ+S I  PL G  
Sbjct: 127 -LVHLPQLESLYLGNNKITD---------ITVLSRLTKLDTLSLEDNQISDI-VPLAGL- 174

Query: 258 SDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGN 317
              LQ  Y     +  S  + +  L  L  L L   +           L     +     
Sbjct: 175 -TKLQNLYLSKNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG 231

Query: 318 NLQ 320
           +L 
Sbjct: 232 SLV 234

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 76.0 bits (187), Expect = 1e-15
 Identities = 45/256 (17%), Positives = 92/256 (35%), Gaps = 15/256 (5%)

Query: 44  SVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLS-LSK 102
            V+ K  F     L+ I +S N +   +  D+ + LP L ++ +        I       
Sbjct: 43  RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQN 102

Query: 103 CTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLP-NLKWL 161
              LQ+L + +         +  +  +   L +    + ++H  +     V L      L
Sbjct: 103 LPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQD--NINIH-TIERNSFVGLSFESVIL 159

Query: 162 ALGMNKLRTIPNSITNASEL-TLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSS 220
            L  N ++ I NS  N ++L  L     N+   L  + F       +LD+    + +  S
Sbjct: 160 WLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS 219

Query: 221 TTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIG 280
                 L +L     L+    ++ +    L  L+     SL   Y   C    +  ++I 
Sbjct: 220 YG----LENLKK---LRARSTYNLKKLPTLEKLVALMEASLT--YPSHCCAFANWRRQIS 270

Query: 281 NLNGLIDLRLQDNDLN 296
            L+ + +  +   +++
Sbjct: 271 ELHPICNKSILRQEVD 286

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 72.6 bits (178), Expect = 1e-14
 Identities = 33/200 (16%), Positives = 64/200 (32%), Gaps = 17/200 (8%)

Query: 55  SSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLS-LSKCTQLQHLWLEH 113
            +   +R     L   +     +    LE++ +  N     I     S   +L  + +E 
Sbjct: 30  RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88

Query: 114 NKFTGRLPENI-GNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMN-KLRTI 171
                 +      NL  L+ L++ +     +  HLP    +       L +  N  + TI
Sbjct: 89  ANNLLYINPEAFQNLPNLQYLLISN---TGIK-HLPDVHKIHSLQKVLLDIQDNINIHTI 144

Query: 172 P-NSITN-ASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSS 229
             NS    + E  +L L KN    +  + F   +   L    NN L    +         
Sbjct: 145 ERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDV----FHG 200

Query: 230 LTNCIYLKVLGLHSNQLSGI 249
            +      +L +   ++  +
Sbjct: 201 ASG---PVILDISRTRIHSL 217

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 51.4 bits (123), Expect = 1e-07
 Identities = 37/176 (21%), Positives = 62/176 (35%), Gaps = 14/176 (7%)

Query: 156 PNLKWLALGMNKLRTIP-NSITNASELTLLELGKNSF-SGLVPNTFGNLRFLSLLDLGN- 212
            N   L   + KLR I   + +   +L  +E+ +N     +  + F NL  L  + +   
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 213 NYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELK 272
           N L   +         +L N   L+ L + +  +   LP +    S         D    
Sbjct: 90  NNLLYINPEA----FQNLPN---LQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINI 141

Query: 273 GSIPQEI--GNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSD 326
            +I +    G     + L L  N +   I  +     QL  L L  NN    +P+D
Sbjct: 142 HTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPND 196

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 71.9 bits (177), Expect = 1e-14
 Identities = 59/216 (27%), Positives = 85/216 (39%), Gaps = 39/216 (18%)

Query: 104 TQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLAL 163
              + L L+ NK +    +    L+KLR L L     N L   LP+ +   L NL+ L +
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLND---NKLQ-TLPAGIFKELKNLETLWV 92

Query: 164 GMNKLRTIPNSI-TNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTT 222
             NKL+ +P  +      L  L L +N    L P  F +L  L+ L LG N L    S  
Sbjct: 93  TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ---SLP 149

Query: 223 EWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEI-GN 281
           +  F   LT+   LK L L++NQL                            +P+     
Sbjct: 150 KGVF-DKLTS---LKELRLYNNQLK--------------------------RVPEGAFDK 179

Query: 282 LNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGN 317
           L  L  L+L +N L          L++L+ L L  N
Sbjct: 180 LTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 71.2 bits (175), Expect = 2e-14
 Identities = 57/193 (29%), Positives = 78/193 (40%), Gaps = 17/193 (8%)

Query: 55  SSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSL-SKCTQLQHLWLEH 113
           +  K + L SN LS SLP+   +RL  L  L L  N     +P  +  +   L+ LW+  
Sbjct: 37  ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWVTD 94

Query: 114 NKFTGRLPENI-GNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIP 172
           NK    LP  +   L  L  L L     N L   LP  +  SL  L +L+LG N+L+++P
Sbjct: 95  NKLQ-ALPIGVFDQLVNLAELRLDR---NQLK-SLPPRVFDSLTKLTYLSLGYNELQSLP 149

Query: 173 NSI-TNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLT 231
             +    + L  L L  N    +    F  L  L  L L NN L        +  L  L 
Sbjct: 150 KGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGA-FDSLEKLK 208

Query: 232 NCIYLKVLGLHSN 244
                  L L  N
Sbjct: 209 M------LQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 62.7 bits (153), Expect = 2e-11
 Identities = 47/162 (29%), Positives = 73/162 (45%), Gaps = 15/162 (9%)

Query: 166 NKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWS 225
            KL  IP++I   ++   L+L  N  S L    F  L  L LL L +N L T  +     
Sbjct: 26  KKLTAIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGI--- 80

Query: 226 FLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEI-GNLNG 284
               L N   L+ L +  N+L   LP  + +   +L +      +LK S+P  +  +L  
Sbjct: 81  -FKELKN---LETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTK 134

Query: 285 LIDLRLQDNDLNGTIPTTV-GRLQQLQGLFLFGNNLQGSIPS 325
           L  L L  N+L  ++P  V  +L  L+ L L+ N L+  +P 
Sbjct: 135 LTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLK-RVPE 174

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 62.3 bits (152), Expect = 2e-11
 Identities = 52/182 (28%), Positives = 67/182 (36%), Gaps = 36/182 (19%)

Query: 147 LPSTLSVSLPNLKWLALGMNKLRTIPNSI-TNASELTLLELGKNSFSGLVPNTFGNLRFL 205
           LPS     L  L+ L L  NKL+T+P  I      L  L +  N    L    F  L  L
Sbjct: 52  LPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNL 111

Query: 206 SLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFY 265
           + L L  N L +           SLT    L  L L  N+L   LP   G F D L    
Sbjct: 112 AELRLDRNQLKSLPPRV----FDSLTK---LTYLSLGYNELQ-SLPK--GVF-DKLTS-- 158

Query: 266 AYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTV-GRLQQLQGLFLFGNNLQGSIP 324
                              L +LRL +N L   +P     +L +L+ L L  N L+  +P
Sbjct: 159 -------------------LKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLK-RVP 197

Query: 325 SD 326
             
Sbjct: 198 EG 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 72.2 bits (177), Expect = 2e-14
 Identities = 39/170 (22%), Positives = 60/170 (35%), Gaps = 20/170 (11%)

Query: 55  SSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQI----PLSLSKCTQLQHLW 110
           S   ++ LS N+LS         RL +L  L+L  N     +      +      L++L 
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN----HLNFISSEAFVPVPNLRYLD 94

Query: 111 LEHNKFTGRLPENI-GNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLR 169
           L  N     L E +  +L  L  L+L    +N +   +       +  L+ L L  N++ 
Sbjct: 95  LSSNHLH-TLDEFLFSDLQALEVLLL---YNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS 149

Query: 170 TIPN----SITNASELTLLELGKNSFSGLVPNTFGNLRFLSL--LDLGNN 213
             P           +L LL+L  N    L       L       L L NN
Sbjct: 150 RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 69.9 bits (171), Expect = 1e-13
 Identities = 42/165 (25%), Positives = 68/165 (41%), Gaps = 12/165 (7%)

Query: 96  IPLSLSKCTQLQHLWLEHNKFTGRLPENI-GNLSKLRSLVLGHKAHNSLHGHLPSTLSVS 154
           +P SL   +    L L HN  +    E     L+ L SL+L   +HN L+  + S   V 
Sbjct: 33  VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLL---SHNHLN-FISSEAFVP 86

Query: 155 LPNLKWLALGMNKLRTIPNSI-TNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNN 213
           +PNL++L L  N L T+   + ++   L +L L  N    +  N F ++  L  L L  N
Sbjct: 87  VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN 146

Query: 214 YLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFS 258
            ++          +        L +L L SN+L  +    +    
Sbjct: 147 QIS----RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLP 187

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 58.3 bits (141), Expect = 7e-10
 Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 12/121 (9%)

Query: 51  FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQI----PLSLSKCTQL 106
           F  + +L+ + LSSN L  +L   L + L +LE L+L +N     I      +     QL
Sbjct: 84  FVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNN----HIVVVDRNAFEDMAQL 138

Query: 107 QHLWLEHNKFTGRLPENI-GNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGM 165
           Q L+L  N+ + R P  +  + +KL  L+L   + N L   LP T    LP      L +
Sbjct: 139 QKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYL 196

Query: 166 N 166
           +
Sbjct: 197 H 197

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 54.8 bits (132), Expect = 1e-08
 Identities = 37/177 (20%), Positives = 58/177 (32%), Gaps = 40/177 (22%)

Query: 156 PNLKWLALGMNKLRTIPNSIT--NASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNN 213
                L L  N L  +    T    + L  L L  N  + +    F  +  L  LDL +N
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98

Query: 214 YLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKG 273
           +L T     +    S L     L+VL L++N +  +       F                
Sbjct: 99  HLHT----LDEFLFSDLQA---LEVLLLYNNHIVVVDR---NAFE--------------- 133

Query: 274 SIPQEIGNLNGLIDLRLQDNDLNGTIP----TTVGRLQQLQGLFLFGNNLQGSIPSD 326
                  ++  L  L L  N ++   P        +L +L  L L  N L+  +P  
Sbjct: 134 -------DMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK-KLPLT 181

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 47.1 bits (112), Expect = 3e-06
 Identities = 38/165 (23%), Positives = 59/165 (35%), Gaps = 40/165 (24%)

Query: 166 NKLRTIPNSITNASELTLLELGKNSFSGLVPNT-FGNLRFLSLLDLGNNYLTTRSSTTEW 224
            +L  +P S+   S   LL+L  N+ S L        L  L  L L +N+L   SS    
Sbjct: 28  QQLPNVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEA-- 83

Query: 225 SFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEI-GNLN 283
                + N   L+ L L SN L                           ++ + +  +L 
Sbjct: 84  --FVPVPN---LRYLDLSSNHLH--------------------------TLDEFLFSDLQ 112

Query: 284 GLIDLRLQDNDLNGTIPTTV-GRLQQLQGLFLFGNNLQGSIPSDL 327
            L  L L +N +   +       + QLQ L+L  N +    P +L
Sbjct: 113 ALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVEL 155

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 43.3 bits (102), Expect = 6e-05
 Identities = 24/154 (15%), Positives = 48/154 (31%), Gaps = 25/154 (16%)

Query: 44  SVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIP----LS 99
             L +  F ++ +L+++ L +N +   +  +    +  L++L L  N    + P      
Sbjct: 101 HTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKD 158

Query: 100 LSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHG-------HLPSTLS 152
            +K  +L  L L  NK       ++  L       L       LH         L    S
Sbjct: 159 GNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL------YLHNNPLECDCKLYQLFS 212

Query: 153 VSLPNLKWLALGMNKLRTIPNSITNASELTLLEL 186
                  W    ++ +      +       L  +
Sbjct: 213 ------HWQYRQLSSVMDFQEDLYCMHSKKLHNI 240

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 71.5 bits (175), Expect = 2e-14
 Identities = 57/283 (20%), Positives = 96/283 (33%), Gaps = 25/283 (8%)

Query: 53  NISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSK---CTQLQHL 109
              SL+ +    ++ +         +  SL++L +R+     +I     +    + LQ L
Sbjct: 41  GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100

Query: 110 WLEHNKFTGRLPENIGNLS--KLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNK 167
            LE+ + TG  P  +   +   L  L L + +  +    L        P LK L++    
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160

Query: 168 LRTIP-NSITNASELTLLELGKNSFSG-------LVPNTFGNLRFLSLLDLGNNYLTTRS 219
                   +     L+ L+L  N   G       L P  F  L+ L+L + G        
Sbjct: 161 SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP---- 216

Query: 220 STTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEI 279
                   +     + L+ L L  N L         ++   L         LK  +P+ +
Sbjct: 217 ---SGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL 272

Query: 280 GNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGS 322
                L  L L  N L+   P+    L Q+  L L GN    S
Sbjct: 273 --PAKLSVLDLSYNRLD-RNPSP-DELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 60.3 bits (146), Expect = 1e-10
 Identities = 55/292 (18%), Positives = 90/292 (30%), Gaps = 18/292 (6%)

Query: 41  DPYSVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIP-LS 99
           +P  +  ++C  N S  K    S+ +  G+   +L     SLE L+ R +          
Sbjct: 4   EPCELDEESCSCNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTD 63

Query: 100 LSKCTQLQHLWLEHNKFTGRLPEN---IGNLSKLRSLVLGHKAHNSLHGHLP-STLSVSL 155
           + K   L+ L +   +   R+      +  +S L+ L L    +  + G  P   L  + 
Sbjct: 64  IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTL---ENLEVTGTAPPPLLEATG 120

Query: 156 PNLKWLALGMNKLRTIPNSITNASE-----LTLLELGKNSFSGLVPNTFGNLRFLSLLDL 210
           P+L  L L      T    +    +     L +L + +                LS LDL
Sbjct: 121 PDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDL 180

Query: 211 GNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCE 270
            +N                      L +        SG+   L       LQ        
Sbjct: 181 SDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV-QLQGLDLSHNS 239

Query: 271 LKGSIPQEI-GNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQG 321
           L+ +         + L  L L    L   +P   G   +L  L L  N L  
Sbjct: 240 LRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPK--GLPAKLSVLDLSYNRLDR 288

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 54.5 bits (131), Expect = 1e-08
 Identities = 41/157 (26%), Positives = 57/157 (36%), Gaps = 15/157 (9%)

Query: 44  SVLTKNCFYNISSLKMIRLSSNSLSG--SLPNDLC-NRLPSLEQLVLRSNGF---FGQIP 97
              +        +L  + LS N   G   L + LC  + P+L+ L LR+ G     G   
Sbjct: 162 LNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCS 221

Query: 98  LSLSKCTQLQHLWLEHNKFTGRLPE-NIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLP 156
              +   QLQ L L HN         +    S+L SL L   +   L   +P  L     
Sbjct: 222 ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNL---SFTGLK-QVPKGLP---A 274

Query: 157 NLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSG 193
            L  L L  N+L   P S     ++  L L  N F  
Sbjct: 275 KLSVLDLSYNRLDRNP-SPDELPQVGNLSLKGNPFLD 310

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 68.9 bits (169), Expect = 9e-14
 Identities = 31/178 (17%), Positives = 64/178 (35%), Gaps = 6/178 (3%)

Query: 44  SVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLS-LSK 102
             +  + F N+ ++  I +S +     L +     L  +  + +R+      I    L +
Sbjct: 44  RTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKE 103

Query: 103 CTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPN-LKWL 161
              L+ L + +       P ++  +       +     N     +P      L N    L
Sbjct: 104 LPLLKFLGIFNTGLK-MFP-DLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTL 161

Query: 162 ALGMNKLRTIPNSITNASELTLLELGKNSF-SGLVPNTFGNLR-FLSLLDLGNNYLTT 217
            L  N   ++     N ++L  + L KN + + +  + FG +    SLLD+    +T 
Sbjct: 162 KLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA 219

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 55.4 bits (134), Expect = 4e-09
 Identities = 38/177 (21%), Positives = 67/177 (37%), Gaps = 13/177 (7%)

Query: 155 LPNLKWLALGMNKLRTIP-NSITNASELTLLELGKN-SFSGLVPNTFGNLRFLSLLDLGN 212
            P+ + L L    LRTIP ++ +N   ++ + +  + +   L  ++F NL  ++ +++ N
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 213 N-YLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCEL 271
              LT          L  L     LK LG+ +  L           +D        D   
Sbjct: 90  TRNLTYIDPDA----LKELPL---LKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPY 142

Query: 272 KGSIPQEI--GNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSD 326
             SIP     G  N  + L+L +N    ++        +L  ++L  N     I  D
Sbjct: 143 MTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKD 198

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 32/230 (13%), Positives = 59/230 (25%), Gaps = 42/230 (18%)

Query: 104 TQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLAL 163
              Q L L              NL  +  + +   + +     L S    +L  +  + +
Sbjct: 31  PSTQTLKLIETHLRTIPSHAFSNLPNISRIYV---SIDVTLQQLESHSFYNLSKVTHIEI 87

Query: 164 GMNK-LRTIPNSI-TNASELTLLELGKNSFSGLVPNTF-GNLRFLSLLDL-GNNYLTTRS 219
              + L  I          L  L +           T   +     +L++  N Y+T+  
Sbjct: 88  RNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIP 147

Query: 220 STTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEI 279
                     L N      L L++N  +                          S+    
Sbjct: 148 VNA----FQGLCN--ETLTLKLYNNGFT--------------------------SVQGYA 175

Query: 280 GNLNGLIDLRLQDNDLNGTIPTTV--GRLQQLQGLFLFGNNLQGSIPSDL 327
            N   L  + L  N     I      G       L +   ++  ++PS  
Sbjct: 176 FNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKG 224

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 26/168 (15%), Positives = 59/168 (35%), Gaps = 21/168 (12%)

Query: 166 NKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDL-GNNYLTTRSSTTEW 224
             ++ IP+   +      L+L +     +  + F NL  +S + +  +  L    S +  
Sbjct: 21  KDIQRIPSLPPS---TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHS-- 75

Query: 225 SFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSD--SLQQFYAYDCELKGSIPQE--IG 280
               +L+    +  + + + +    + P      +   L+    ++  LK   P    + 
Sbjct: 76  --FYNLSK---VTHIEIRNTRNLTYIDP--DALKELPLLKFLGIFNTGLK-MFPDLTKVY 127

Query: 281 NLNGLIDLRLQDNDLNGTIPTTV--GRLQQLQGLFLFGNNLQGSIPSD 326
           + +    L + DN    +IP     G   +   L L+ N    S+   
Sbjct: 128 STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGY 174

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 69.7 bits (171), Expect = 9e-14
 Identities = 46/244 (18%), Positives = 88/244 (36%), Gaps = 33/244 (13%)

Query: 79  LPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHK 138
           L +  ++    +     +  +      +  L       T    E +  L+ L  L L   
Sbjct: 18  LANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKD- 72

Query: 139 AHNSLHGHLPSTLSV--SLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVP 196
             N +     + L+   +L  +  L L  N L+ +   I     +  L+L     + + P
Sbjct: 73  --NQI-----TDLAPLKNLTKITELELSGNPLKNVSA-IAGLQSIKTLDLTSTQITDVTP 124

Query: 197 NTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGN 256
                L  L +L L  N +T          +S L     L+ L + + Q+S + P  + N
Sbjct: 125 --LAGLSNLQVLYLDLNQITN---------ISPLAGLTNLQYLSIGNAQVSDLTP--LAN 171

Query: 257 FSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFG 316
            S  L    A D ++   I   + +L  LI++ L++N ++   P  +     L  + L  
Sbjct: 172 LS-KLTTLKADDNKIS-DIS-PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

Query: 317 NNLQ 320
             + 
Sbjct: 227 QTIT 230

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 67.8 bits (166), Expect = 5e-13
 Identities = 46/220 (20%), Positives = 87/220 (39%), Gaps = 27/220 (12%)

Query: 100 LSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLK 159
                    +    +  T        +L  + +L        ++ G     +   L NL 
Sbjct: 15  DPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTTIEG-----VQ-YLNNLI 66

Query: 160 WLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRS 219
            L L  N++  +   + N +++T LEL  N    +       L+ +  LDL +  +    
Sbjct: 67  GLELKDNQITDLAP-LKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQI---- 119

Query: 220 STTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEI 279
             T+ + L+ L+N   L+VL L  NQ++ I P  +   + +LQ     + ++    P  +
Sbjct: 120 --TDVTPLAGLSN---LQVLYLDLNQITNISP--LAGLT-NLQYLSIGNAQVSDLTP--L 169

Query: 280 GNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNL 319
            NL+ L  L+  DN ++   P  +  L  L  + L  N +
Sbjct: 170 ANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQI 207

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 49.3 bits (118), Expect = 6e-07
 Identities = 35/167 (20%), Positives = 66/167 (39%), Gaps = 14/167 (8%)

Query: 51  FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLW 110
              + S+K + L+S  ++   P      L +L+ L L  N     I   L+  T LQ+L 
Sbjct: 103 IAGLQSIKTLDLTSTQITDVTP---LAGLSNLQVLYLDLNQ-ITNIS-PLAGLTNLQYLS 157

Query: 111 LEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRT 170
           + + + +      + NLSKL +L       + +          SLPNL  + L  N++  
Sbjct: 158 IGNAQVSD--LTPLANLSKLTTLKADDNKISDISPL------ASLPNLIEVHLKNNQISD 209

Query: 171 IPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTT 217
           +   + N S L ++ L   + +        NL   +++   +     
Sbjct: 210 VSP-LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIA 255

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 69.3 bits (170), Expect = 2e-13
 Identities = 57/278 (20%), Positives = 97/278 (34%), Gaps = 42/278 (15%)

Query: 44  SVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKC 103
                     +++L  +   ++S++  +      +L  L +L+  SN       L LS+ 
Sbjct: 31  QATDTISEEQLATLTSLDCHNSSIT-DMTG--IEKLTGLTKLICTSNNITT---LDLSQN 84

Query: 104 TQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVS-LPNLKWLA 162
           T L +L  + NK T     ++  L+KL  L       N L     + L VS  P L +L 
Sbjct: 85  TNLTYLACDSNKLTNL---DVTPLTKLTYLNCD---TNKL-----TKLDVSQNPLLTYLN 133

Query: 163 LGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTT 222
              N L  I   +++ ++LT L+   N     +         L+ LD   N +T      
Sbjct: 134 CARNTLTEID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITE----- 184

Query: 223 EWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNL 282
                  ++    L  L   +N ++ +   L  N    L        +L   I   +  L
Sbjct: 185 -----LDVSQNKLLNRLNCDTNNITKL--DLNQN--IQLTFLDCSSNKLT-EID--VTPL 232

Query: 283 NGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQ 320
             L       N L   +   V  L +L  L     +L 
Sbjct: 233 TQLTYFDCSVNPLT-ELD--VSTLSKLTTLHCIQTDLL 267

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 68.9 bits (169), Expect = 4e-13
 Identities = 54/292 (18%), Positives = 96/292 (32%), Gaps = 38/292 (13%)

Query: 46  LTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQ 105
           LTK        L  +  + N+L+  +     +    L +L    N       L ++  TQ
Sbjct: 118 LTKLDVSQNPLLTYLNCARNTLT-EID---VSHNTQLTELDCHLNKKIT--KLDVTPQTQ 171

Query: 106 LQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVS-LPNLKWLALG 164
           L  L    NK T     ++     L  L       N++     + L ++    L +L   
Sbjct: 172 LTTLDCSFNKITE---LDVSQNKLLNRLNCDT---NNI-----TKLDLNQNIQLTFLDCS 220

Query: 165 MNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSL-------LDLGNNYLTT 217
            NKL  I   +T  ++LT  +   N  + L  +T   L  L         +DL +N    
Sbjct: 221 SNKLTEID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLI 278

Query: 218 RSSTTEWSFLSS--LTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSI 275
                    +    +T+   L +L   +  ++ +   L  N    L   Y  + EL   +
Sbjct: 279 YFQAEGCRKIKELDVTHNTQLYLLDCQAAGITEL--DLSQN--PKLVYLYLNNTELT-EL 333

Query: 276 PQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDL 327
              + +   L  L   +  +     + VG++  L   F             L
Sbjct: 334 D--VSHNTKLKSLSCVNAHIQ-DFSS-VGKIPALNNNFEAEGQTITMPKETL 381

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 63.6 bits (155), Expect = 2e-11
 Identities = 47/250 (18%), Positives = 83/250 (33%), Gaps = 32/250 (12%)

Query: 80  PSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKA 139
            +    V  +        +S  +   L  L   ++  T      I  L+ L  L+     
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICT--- 72

Query: 140 HNSLHGHLPSTLSVS-LPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNT 198
            N++     +TL +S   NL +LA   NKL  +   +T  ++LT L    N  + L  + 
Sbjct: 73  SNNI-----TTLDLSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLDVSQ 125

Query: 199 FGNLRFLSL-------LDLGNNYLTTRSSTTEWSFLSS--LTNCIYLKVLGLHSNQLSGI 249
              L +L+        +D+ +N   T         ++   +T    L  L    N+++ +
Sbjct: 126 NPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITEL 185

Query: 250 LPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQL 309
               +      L +       +   +   +     L  L    N L   I   V  L QL
Sbjct: 186 ---DVSQNK-LLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT-EID--VTPLTQL 235

Query: 310 QGLFLFGNNL 319
                  N L
Sbjct: 236 TYFDCSVNPL 245

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 40/254 (15%), Positives = 79/254 (31%), Gaps = 36/254 (14%)

Query: 51  FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLW 110
                 L  +   +N+++  L     N+   L  L   SN       + ++  TQL +  
Sbjct: 187 VSQNKLLNRLNCDTNNIT-KLDL---NQNIQLTFLDCSSNKL---TEIDVTPLTQLTYFD 239

Query: 111 LEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVS-LPNLKWLALGMNKLR 169
              N  T     ++  LSKL +L         L       + ++    L +      +  
Sbjct: 240 CSVNPLT---ELDVSTLSKLTTLHC---IQTDL-----LEIDLTHNTQLIYFQAEGCRKI 288

Query: 170 TIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSS 229
              + +T+ ++L LL+      + L          L  L L N  LT             
Sbjct: 289 KELD-VTHNTQLYLLDCQAAGITEL---DLSQNPKLVYLYLNNTELTE----------LD 334

Query: 230 LTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLR 289
           +++   LK L   +  +       +G    +L   +  + +      + + N +  I + 
Sbjct: 335 VSHNTKLKSLSCVNAHIQDF--SSVGKIP-ALNNNFEAEGQTITMPKETLTNNSLTIAVS 391

Query: 290 LQDNDLNGTIPTTV 303
               D  G      
Sbjct: 392 PDLLDQFGNPMNIE 405

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 43.1 bits (102), Expect = 7e-05
 Identities = 33/178 (18%), Positives = 63/178 (35%), Gaps = 21/178 (11%)

Query: 55  SSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHN 114
            + ++I   +         D+ +    L  L  ++ G      L LS+  +L +L+L + 
Sbjct: 273 HNTQLIYFQAEGCRKIKELDVTH-NTQLYLLDCQAAGI---TELDLSQNPKLVYLYLNNT 328

Query: 115 KFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNS 174
           + T  L   + + +KL+SL   +            +    +P L        +  T+P  
Sbjct: 329 ELT-ELD--VSHNTKLKSLSCVNAHIQDF------SSVGKIPALNNNFEAEGQTITMPKE 379

Query: 175 ITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTN 232
               + LT+           + + FGN   +   D G     T + T  W  LS+   
Sbjct: 380 TLTNNSLTIAVSPD------LLDQFGNPMNIEPGDGGVYDQATNTIT--WENLSTDNP 429

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 67.2 bits (164), Expect = 1e-12
 Identities = 58/295 (19%), Positives = 106/295 (35%), Gaps = 22/295 (7%)

Query: 42  PYSVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLS 101
           P S+ +     ++++L  ++LS+  L+      L   L  L +     N     I  +  
Sbjct: 205 PNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWK 264

Query: 102 KCTQ---------LQHLWLEHNKFTGRLPENIGNLSK--LRSLVLGHKAHNSLHGHLPST 150
              +         +++L + +   T R+       S+  L+SL++ H  +          
Sbjct: 265 CSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFL-FSKEA 323

Query: 151 LSVSLPNLKWLALGMNKLRTIPNSITNA-SELTLLELGKNSFSGLVPNTFGNLRFLSLLD 209
           L      +    L ++    I      + S  T L   +N F+  V      L+ L  L 
Sbjct: 324 LYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLI 383

Query: 210 LGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDC 269
           L  N L                N   L+ L +  N L+         +++S+        
Sbjct: 384 LQRNGLKNFFKVA-----LMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN 438

Query: 270 ELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIP 324
            L GS+ + +     +  L L +N +  +IP  V  LQ LQ L +  N L+ S+P
Sbjct: 439 MLTGSVFRCLPPK--VKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVP 489

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 67.2 bits (164), Expect = 2e-12
 Identities = 34/174 (19%), Positives = 57/174 (32%), Gaps = 12/174 (6%)

Query: 44  SVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKC 103
             +   C  + SS   +  + N  +       C+ L  L+ L+L+ NG            
Sbjct: 342 PFIHMVCPPSPSSFTFLNFTQNVFT-DSVFQGCSTLKRLQTLILQRNGL-KNFFKVALMT 399

Query: 104 TQLQHLWLEHNKFT----GRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLK 159
             +  L                        +  L L   + N L G +   L    P +K
Sbjct: 400 KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNL---SSNMLTGSVFRCLP---PKVK 453

Query: 160 WLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNN 213
            L L  N++ +IP  +T+   L  L +  N    +    F  L  L  + L +N
Sbjct: 454 VLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 59.5 bits (144), Expect = 5e-10
 Identities = 47/271 (17%), Positives = 84/271 (30%), Gaps = 14/271 (5%)

Query: 55  SSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSL-SKCTQLQHLWLEH 113
              K + LS NS+S  L     + L  L  L L  N     +   +      L++L + H
Sbjct: 52  PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRI-RSLDFHVFLFNQDLEYLDVSH 109

Query: 114 NKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPN 173
           N+    +      ++ LR L L   + N            +L  L +L L   K R +  
Sbjct: 110 NRLQN-IS--CCPMASLRHLDL---SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDL 163

Query: 174 SITNASELT--LLELGKNSFSGLVPNTFGNLRFLSL-LDLGNNYLTTRSSTTEWSFLSSL 230
                  L+  LL+L      G    +        L L    N L +       + L  L
Sbjct: 164 LPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHL 223

Query: 231 TNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIP-QEIGNLNGLIDLR 289
                +K+   +  +L   L  L    +         +   K S+   +      +  L 
Sbjct: 224 QL-SNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLN 282

Query: 290 LQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQ 320
           + +  +   I        +     L   +++
Sbjct: 283 IYNLTITERIDREEFTYSETALKSLMIEHVK 313

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 54.1 bits (130), Expect = 3e-08
 Identities = 40/284 (14%), Positives = 80/284 (28%), Gaps = 25/284 (8%)

Query: 59  MIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFG-QIPLSLSKCTQLQHLWLEHNKFT 117
           ++ L S  + G     L     ++  LV   N  F  Q+ +S++    LQ   ++ N   
Sbjct: 175 LLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDEN 234

Query: 118 GR----LPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPN 173
            +        +     L ++ L      +    +          +++L +    +    +
Sbjct: 235 CQRLMTFLSELTRGPTLLNVTL-QHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERID 293

Query: 174 ------SITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFL 227
                 S T    L +  +    F       +     +++  L  +              
Sbjct: 294 REEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV----CP 349

Query: 228 SSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLID 287
            S ++      L    N  +  +          LQ        LK +  +       +  
Sbjct: 350 PSPSS---FTFLNFTQNVFTDSVFQGCSTLK-RLQTLILQRNGLK-NFFKVALMTKNMSS 404

Query: 288 LRLQDNDLN----GTIPTTVGRLQQLQGLFLFGNNLQGSIPSDL 327
           L   D  LN         T    + +  L L  N L GS+   L
Sbjct: 405 LETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL 448

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 53.0 bits (127), Expect = 7e-08
 Identities = 45/295 (15%), Positives = 82/295 (27%), Gaps = 25/295 (8%)

Query: 51  FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLW 110
           F N++ L  + LS+          + +   S   L L S    G    SL +      L 
Sbjct: 142 FGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESL-QIPNTTVLH 200

Query: 111 LEHNKFTGRLPENIGNLSKLRSLVLGH-KAHNSLHGHLPSTLSVSLPNLKWLALGMNKLR 169
           L  +  +    +   +++ L  L L + K ++     L + LS        L + +  + 
Sbjct: 201 LVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIE 260

Query: 170 TIPNSIT------NASELTLLELGKNSFSGLVP-----NTFGNLRFLSLLDLGNNYLTTR 218
           T                +  L +   + +  +       +   L+ L +  + N      
Sbjct: 261 TTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFS 320

Query: 219 SSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQE 278
                  F         + +  L  +    I      + S S             S+ Q 
Sbjct: 321 KEALYSVFAE-------MNIKMLSISDTPFIHMVCPPSPS-SFTFLNFTQNVFTDSVFQG 372

Query: 279 IGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGN---NLQGSIPSDLCHW 330
              L  L  L LQ N L           + +  L        +L        C W
Sbjct: 373 CSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAW 426

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 44.5 bits (105), Expect = 3e-05
 Identities = 35/176 (19%), Positives = 62/176 (35%), Gaps = 16/176 (9%)

Query: 156 PNLKWLALGMNKLRTIPNS-ITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNY 214
           P  K L+L  N +  +    I+  SEL +L L  N    L  + F   + L  LD+ +N 
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111

Query: 215 LTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSD--SLQQFYAYDCELK 272
           L   S          + +   L+ L L  N    +  P+   F +   L        + +
Sbjct: 112 LQNISC-------CPMAS---LRHLDLSFNDFDVL--PVCKEFGNLTKLTFLGLSAAKFR 159

Query: 273 GSIPQEIGNLN-GLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDL 327
                 + +L+   I L L    + G    ++          +F  N   S+  ++
Sbjct: 160 QLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNM 215

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 63.9 bits (156), Expect = 8e-12
 Identities = 44/221 (19%), Positives = 79/221 (35%), Gaps = 27/221 (12%)

Query: 100 LSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLK 159
                +     L+    T         L+ +  ++  +    S+ G     +   LPN+ 
Sbjct: 20  DDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIKSVQG-----IQ-YLPNVT 71

Query: 160 WLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRS 219
            L L  NKL  I   + N   L  L L +N    L      +L+ L  L L +N ++   
Sbjct: 72  KLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGISD-- 126

Query: 220 STTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEI 279
                  ++ L +   L+ L L +N+++ I    +   +  L      D ++   I   +
Sbjct: 127 -------INGLVHLPQLESLYLGNNKITDITV--LSRLT-KLDTLSLEDNQIS-DIV-PL 174

Query: 280 GNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQ 320
             L  L +L L  N +  +    +  L+ L  L LF     
Sbjct: 175 AGLTKLQNLYLSKNHI--SDLRALAGLKNLDVLELFSQECL 213

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 63.1 bits (154), Expect = 1e-11
 Identities = 45/242 (18%), Positives = 84/242 (34%), Gaps = 27/242 (11%)

Query: 78  RLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGH 137
                 +  L+       +  +  +   +  +   ++     + + I  L  +  L L  
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNG 77

Query: 138 KAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPN 197
                +       L+ +L NL WL L  NK++ + + + +  +L  L L  N  S +   
Sbjct: 78  NKLTDI-----KPLA-NLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISDING- 129

Query: 198 TFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNF 257
              +L  L  L LGNN +T          ++ L+    L  L L  NQ+S I+P  +   
Sbjct: 130 -LVHLPQLESLYLGNNKITD---------ITVLSRLTKLDTLSLEDNQISDIVP--LAGL 177

Query: 258 SDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGN 317
           +  LQ  Y     +   + + +  L  L  L L   +           L     +     
Sbjct: 178 T-KLQNLYLSKNHIS-DL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG 234

Query: 318 NL 319
           +L
Sbjct: 235 SL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 42/171 (24%), Positives = 64/171 (37%), Gaps = 22/171 (12%)

Query: 51  FYNISSLKMIRLSSNSLSGSLPNDLCN--RLPSLEQLVLRSNGFFGQIPLSLSKCTQLQH 108
             N+ +L  + L  N +      DL +   L  L+ L L  NG    I   L    QL+ 
Sbjct: 86  LANLKNLGWLFLDENKVK-----DLSSLKDLKKLKSLSLEHNGI-SDIN-GLVHLPQLES 138

Query: 109 LWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLS--VSLPNLKWLALGMN 166
           L+L +NK T      +  L+KL +L L     N +     S +     L  L+ L L  N
Sbjct: 139 LYLGNNKITD--ITVLSRLTKLDTLSL---EDNQI-----SDIVPLAGLTKLQNLYLSKN 188

Query: 167 KLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTT 217
            +  +   +     L +LEL          N   NL   + +   +  L T
Sbjct: 189 HISDLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT 238

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 62.4 bits (152), Expect = 1e-11
 Identities = 38/143 (26%), Positives = 57/143 (39%), Gaps = 14/143 (9%)

Query: 104 TQLQHLWLEHNKFTGRLPENI-GNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLA 162
             +  + LE N     +P        KLR + L    +N +   L       L +L  L 
Sbjct: 32  ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLS---NNQIS-ELAPDAFQGLRSLNSLV 86

Query: 163 LGMNKLRTIPNSI-TNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSST 221
           L  NK+  +P S+      L LL L  N  + L  + F +L  L+LL L +N L T +  
Sbjct: 87  LYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKG 146

Query: 222 TEWSFLSSLTNCIYLKVLGLHSN 244
           T     S L     ++ + L  N
Sbjct: 147 T----FSPLRA---IQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 57.7 bits (140), Expect = 5e-10
 Identities = 36/155 (23%), Positives = 62/155 (40%), Gaps = 16/155 (10%)

Query: 166 NKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWS 225
             L  IP ++     +T + L +N+   + P  F   + L  +DL NN ++  +      
Sbjct: 21  KGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDA--- 75

Query: 226 FLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSD--SLQQFYAYDCELKGSIPQEI-GNL 282
               L +   L  L L+ N+++  LP     F    SLQ       ++   +  +   +L
Sbjct: 76  -FQGLRS---LNSLVLYGNKITE-LPK--SLFEGLFSLQLLLLNANKIN-CLRVDAFQDL 127

Query: 283 NGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGN 317
           + L  L L DN L      T   L+ +Q + L  N
Sbjct: 128 HNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 53.9 bits (130), Expect = 8e-09
 Identities = 26/111 (23%), Positives = 41/111 (36%), Gaps = 9/111 (8%)

Query: 140 HNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSI-TNASELTLLELGKNSFSGLVPNT 198
            N++   +P         L+ + L  N++  +          L  L L  N  + L  + 
Sbjct: 41  QNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSL 99

Query: 199 FGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGI 249
           F  L  L LL L  N +         +F   L N   L +L L+ N+L  I
Sbjct: 100 FEGLFSLQLLLLNANKIN---CLRVDAF-QDLHN---LNLLSLYDNKLQTI 143

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 51.2 bits (123), Expect = 9e-08
 Identities = 34/128 (26%), Positives = 45/128 (35%), Gaps = 15/128 (11%)

Query: 44  SVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQI----PLS 99
            V+    F     L+ I LS+N +S  L  D    L SL  LVL  N    +I       
Sbjct: 45  KVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGN----KITELPKSL 99

Query: 100 LSKCTQLQHLWLEHNKFTGRLPENI-GNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNL 158
                 LQ L L  NK    L  +   +L  L  L L     N L   +       L  +
Sbjct: 100 FEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLY---DNKLQ-TIAKGTFSPLRAI 154

Query: 159 KWLALGMN 166
           + + L  N
Sbjct: 155 QTMHLAQN 162

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.1 bits (149), Expect = 2e-11
 Identities = 26/172 (15%), Positives = 52/172 (30%), Gaps = 19/172 (11%)

Query: 79  LPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHK 138
           + SL  + L +        +       ++ L + +   T      I  LS L  L +   
Sbjct: 43  MNSLTYITLANINVTDLTGIE--YAHNIKDLTINNIHATN--YNPISGLSNLERLRIMG- 97

Query: 139 AHNSLHGHLPSTLSVSLPNLKWLALGMNKLR-TIPNSITNASELTLLELGKNSFSGLVPN 197
               +       LS  L +L  L +  +    +I   I    ++  ++L  N     +  
Sbjct: 98  --KDVTSDKIPNLS-GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP 154

Query: 198 TFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGI 249
               L  L  L++  + +              + +   L  L   S  + G 
Sbjct: 155 -LKTLPELKSLNIQFDGVHD---------YRGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.1 bits (136), Expect = 1e-09
 Identities = 28/142 (19%), Positives = 54/142 (38%), Gaps = 9/142 (6%)

Query: 53  NISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLE 112
              ++K + +++   +   P    + L +LE+L +           +LS  T L  L + 
Sbjct: 64  YAHNIKDLTINNIHATNYNP---ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120

Query: 113 HNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIP 172
           H+     +   I  L K+ S+ L    +N     +   L  +LP LK L +  + +    
Sbjct: 121 HSAHDDSILTKINTLPKVNSIDLS---YNGAITDI-MPLK-TLPELKSLNIQFDGVHDY- 174

Query: 173 NSITNASELTLLELGKNSFSGL 194
             I +  +L  L     +  G 
Sbjct: 175 RGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.4 bits (134), Expect = 2e-09
 Identities = 25/214 (11%), Positives = 55/214 (25%), Gaps = 42/214 (19%)

Query: 80  PSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKA 139
            + +  +    G      ++ ++   L ++ L +   T     ++  +            
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVT-----DLTGIEYA--------- 65

Query: 140 HNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTF 199
                            N+K L +           I+  S L  L +     +       
Sbjct: 66  ----------------HNIKDLTINNIHATNYNP-ISGLSNLERLRIMGKDVTSDKIPNL 108

Query: 200 GNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSD 259
             L  L+LLD+ ++             L+ +     +  + L  N     + PL      
Sbjct: 109 SGLTSLTLLDISHSAHDDSI-------LTKINTLPKVNSIDLSYNGAITDIMPLKTL--P 159

Query: 260 SLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDN 293
            L+        +       I +   L  L     
Sbjct: 160 ELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.3 bits (121), Expect = 1e-07
 Identities = 24/146 (16%), Positives = 53/146 (36%), Gaps = 15/146 (10%)

Query: 180 ELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVL 239
                 LG++S + +   T   +  L+ + L N  +T          L+ +     +K L
Sbjct: 24  AYLNGLLGQSSTANI---TEAQMNSLTYITLANINVTD---------LTGIEYAHNIKDL 71

Query: 240 GLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTI 299
            +++   +   P  I   S +L++      ++       +  L  L  L +  +  + +I
Sbjct: 72  TINNIHATNYNP--ISGLS-NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSI 128

Query: 300 PTTVGRLQQLQGLFLFGNNLQGSIPS 325
            T +  L ++  + L  N     I  
Sbjct: 129 LTKINTLPKVNSIDLSYNGAITDIMP 154

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 62.1 bits (150), Expect = 7e-11
 Identities = 37/173 (21%), Positives = 60/173 (34%), Gaps = 14/173 (8%)

Query: 75  LCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLV 134
           +   + +L+ L+           L      +  +L    +KF           + +R L 
Sbjct: 388 IILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLH 447

Query: 135 LGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGL 194
           L HK    L           L  +  L L  N+LR +P ++     L +L+   N+   +
Sbjct: 448 LAHKDLTVLCH------LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 501

Query: 195 VPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLS 247
                 NL  L  L L NN L         + +  L +C  L +L L  N L 
Sbjct: 502 DG--VANLPRLQELLLCNNRLQQ------SAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 51.3 bits (122), Expect = 2e-07
 Identities = 42/246 (17%), Positives = 78/246 (31%), Gaps = 33/246 (13%)

Query: 93  FGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHG------H 146
                +     +Q + + L+          +     +L    L  +    L         
Sbjct: 316 HTFRVIWTGSDSQKECVLLKDRPEC--WCRDSATDEQLFRCELSVEKSTVLQSELESCKE 373

Query: 147 LPSTLSVSLPNLKWLALGMNKLRTI---PNSITNASELTLLELGKNSFSGLVPNTFGNLR 203
           L      +   L  + L M  L  +     ++   S L  ++  + ++   + + F    
Sbjct: 374 LQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLEN 433

Query: 204 FLSL--------LDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIG 255
            +          L L +  LT          L  L   + +  L L  N+L  + P L  
Sbjct: 434 SVLKMEYADVRVLHLAHKDLTV---------LCHLEQLLLVTHLDLSHNRLRALPPALAA 484

Query: 256 NFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNG-TIPTTVGRLQQLQGLFL 314
                L+   A D  L+ ++   + NL  L +L L +N L        +    +L  L L
Sbjct: 485 LRC--LEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL 540

Query: 315 FGNNLQ 320
            GN+L 
Sbjct: 541 QGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 49.4 bits (117), Expect = 9e-07
 Identities = 25/128 (19%), Positives = 47/128 (36%), Gaps = 11/128 (8%)

Query: 50  CFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHL 109
                + ++++ L+   L+  L +    +L  +  L L  N     +P +L+    L+ L
Sbjct: 436 LKMEYADVRVLHLAHKDLT-VLCH--LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVL 491

Query: 110 WLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVS-LPNLKWLALGMNKL 168
               N     +   + NL +L+ L+L +   N L     +   +   P L  L L  N L
Sbjct: 492 QASDNALE-NVD-GVANLPRLQELLLCN---NRL-QQSAAIQPLVSCPRLVLLNLQGNSL 545

Query: 169 RTIPNSIT 176
                   
Sbjct: 546 CQEEGIQE 553

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 48.6 bits (115), Expect = 2e-06
 Identities = 39/240 (16%), Positives = 69/240 (28%), Gaps = 20/240 (8%)

Query: 95  QIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVS 154
           + P   ++ + +    L       +LP++   +    S                   S +
Sbjct: 288 RTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSAT 347

Query: 155 LPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNY 214
              L    L + K   + + + +  EL  LE         +      L  L        Y
Sbjct: 348 DEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQY 407

Query: 215 LTT--------------RSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDS 260
            +T                S               ++VL L    L+ +    +      
Sbjct: 408 FSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL--CHLEQLL-L 464

Query: 261 LQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQ 320
           +         L+ ++P  +  L  L  L+  DN L   +   V  L +LQ L L  N LQ
Sbjct: 465 VTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQ 521

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 58.9 bits (143), Expect = 2e-10
 Identities = 30/145 (20%), Positives = 55/145 (37%), Gaps = 13/145 (8%)

Query: 104 TQLQHLWLEHNKFTGRLPENI-GNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLA 162
                L L +N+FT      I   L +LR +     ++N +   +          +  + 
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINF---SNNKIT-DIEEGAFEGASGVNEIL 87

Query: 163 LGMNKLRTIPNSI-TNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSST 221
           L  N+L  + + +      L  L L  N  + +  ++F  L  + LL L +N +TT +  
Sbjct: 88  LTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPG 147

Query: 222 TEWSFLSSLTNCIYLKVLGLHSNQL 246
                  +L +   L  L L +N  
Sbjct: 148 A----FDTLHS---LSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 51.6 bits (124), Expect = 5e-08
 Identities = 25/143 (17%), Positives = 50/143 (34%), Gaps = 16/143 (11%)

Query: 156 PNLKWLALGMNKLRTIPNSIT--NASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNN 213
                L L  N+   +  +       +L  +    N  + +    F     ++ + L +N
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91

Query: 214 YLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSD--SLQQFYAYDCEL 271
            L       +      L +   LK L L SN+++ +      +F    S++    YD ++
Sbjct: 92  RLENV----QHKMFKGLES---LKTLMLRSNRITCVGN---DSFIGLSSVRLLSLYDNQI 141

Query: 272 KGSIPQEI-GNLNGLIDLRLQDN 293
             ++       L+ L  L L  N
Sbjct: 142 T-TVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 30/160 (18%), Positives = 48/160 (30%), Gaps = 38/160 (23%)

Query: 167 KLRTIPNSITNASELTLLELGKNSFSGLVPN-TFGNLRFLSLLDLGNNYLTTRSSTTEWS 225
           KL  IP  I        L L  N F+ L     F  L  L  ++  NN +T         
Sbjct: 22  KLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGA--- 76

Query: 226 FLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGL 285
                +    +  + L SN+L   +      F                        L  L
Sbjct: 77  -FEGASG---VNEILLTSNRLEN-VQH--KMFK----------------------GLESL 107

Query: 286 IDLRLQDNDLNGTIPTTV-GRLQQLQGLFLFGNNLQGSIP 324
             L L+ N +   +       L  ++ L L+ N +  ++ 
Sbjct: 108 KTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT-TVA 145

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 23/146 (15%), Positives = 48/146 (32%), Gaps = 38/146 (26%)

Query: 51  FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQI----PLSLSKCTQL 106
           F  +  L+ I  S+N ++  +          + +++L SN    ++             L
Sbjct: 53  FKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSN----RLENVQHKMFKGLESL 107

Query: 107 QHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMN 166
           + L L  N+ T                             + +   + L +++ L+L  N
Sbjct: 108 KTLMLRSNRIT----------------------------CVGNDSFIGLSSVRLLSLYDN 139

Query: 167 KLRTIPNSI-TNASELTLLELGKNSF 191
           ++ T+          L+ L L  N F
Sbjct: 140 QITTVAPGAFDTLHSLSTLNLLANPF 165

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 58.6 bits (142), Expect = 4e-10
 Identities = 43/158 (27%), Positives = 67/158 (42%), Gaps = 13/158 (8%)

Query: 83  EQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENI-GNLSKLRSLVLGHKAHN 141
           E+L L+S G       +    T+L  L L++N+    L   +  +L++L +L L +    
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQLA 96

Query: 142 SLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSI-TNASELTLLELGKNSFSGLVPNTFG 200
           SL    P  +   L  L  L LG N+L+++P+ +    ++L  L L  N    +    F 
Sbjct: 97  SL----PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFD 152

Query: 201 NLRFLSLLDLGNNYLTTRSSTTEWSF--LSSLTNCIYL 236
            L  L  L L  N L    S    +F  L  L   I L
Sbjct: 153 KLTNLQTLSLSTNQLQ---SVPHGAFDRLGKLQT-ITL 186

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 55.1 bits (133), Expect = 6e-09
 Identities = 52/172 (30%), Positives = 65/172 (37%), Gaps = 33/172 (19%)

Query: 147 LPSTLSVSLPNLKWLALGMNKLRTIPNSITNA-SELTLLELGKNSFSGLVPNTFGNLRFL 205
           L       L  L WL L  N+L+T+   + +  +EL  L L  N  + L    F +L  L
Sbjct: 50  LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQL 109

Query: 206 SLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFY 265
             L LG N L    S     F   LT    LK L L++NQL   +P   G F D L    
Sbjct: 110 DKLYLGGNQLK---SLPSGVF-DRLTK---LKELRLNTNQLQS-IPA--GAF-DKLTN-- 156

Query: 266 AYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGN 317
                              L  L L  N L         RL +LQ + LFGN
Sbjct: 157 -------------------LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 52.4 bits (126), Expect = 4e-08
 Identities = 52/160 (32%), Positives = 74/160 (46%), Gaps = 15/160 (9%)

Query: 167 KLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSF 226
            L ++P+ I   ++   L+L     + L   TF  L  L+ L+L  N L T S+      
Sbjct: 25  SLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGV---- 78

Query: 227 LSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEI-GNLNGL 285
              LT    L  LGL +NQL+  LP  + +    L + Y    +LK S+P  +   L  L
Sbjct: 79  FDDLTE---LGTLGLANNQLAS-LPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKL 133

Query: 286 IDLRLQDNDLNGTIPTTV-GRLQQLQGLFLFGNNLQGSIP 324
            +LRL  N L  +IP     +L  LQ L L  N LQ S+P
Sbjct: 134 KELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQ-SVP 171

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 56.6 bits (137), Expect = 8e-10
 Identities = 36/157 (22%), Positives = 52/157 (33%), Gaps = 38/157 (24%)

Query: 96  IPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSL 155
           +  +LS     +HL L  N       E I +LS +                         
Sbjct: 40  MDATLSTLKACKHLALSTNNI-----EKISSLSGM------------------------- 69

Query: 156 PNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYL 215
            NL+ L+LG N ++ I N    A  L  L +  N  + L       L  L +L + NN +
Sbjct: 70  ENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSG--IEKLVNLRVLYMSNNKI 127

Query: 216 TTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPP 252
                 T W  +  L     L+ L L  N L      
Sbjct: 128 ------TNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 57.7 bits (140), Expect = 8e-10
 Identities = 36/196 (18%), Positives = 66/196 (33%), Gaps = 26/196 (13%)

Query: 100 LSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLK 159
                      L     T     +   LS +++    +    SL G     +     NLK
Sbjct: 15  DPGLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQSLAG-----MQ-FFTNLK 66

Query: 160 WLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRS 219
            L L  N++  +   + + ++L  L + +N    L       L     L L NN L    
Sbjct: 67  ELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPSACLSR---LFLDNNELRD-- 120

Query: 220 STTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEI 279
                    SL +   L++L + +N+L  I+   +G  S  L+    +  E+  +    +
Sbjct: 121 -------TDSLIHLKNLEILSIRNNKLKSIVM--LGFLS-KLEVLDLHGNEI--TNTGGL 168

Query: 280 GNLNGLIDLRLQDNDL 295
             L  +  + L     
Sbjct: 169 TRLKKVNWIDLTGQKC 184

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 57.0 bits (138), Expect = 1e-09
 Identities = 32/173 (18%), Positives = 65/173 (37%), Gaps = 23/173 (13%)

Query: 79  LPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHK 138
           L +  +  L        +     + + +Q+   +++         +   + L+ L L H 
Sbjct: 18  LANAVKQNLGKQSVTDLVSQK--ELSGVQNFNGDNSNIQS--LAGMQFFTNLKELHLSHN 73

Query: 139 AHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNT 198
             + L     S L   L  L+ L++  N+L+ +      ++ L+ L L  N         
Sbjct: 74  QISDL-----SPLK-DLTKLEELSVNRNRLKNLNGI--PSACLSRLFLDNNELRDTDS-- 123

Query: 199 FGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILP 251
             +L+ L +L + NN L +         +  L     L+VL LH N+++    
Sbjct: 124 LIHLKNLEILSIRNNKLKS---------IVMLGFLSKLEVLDLHGNEITNTGG 167

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.2 bits (110), Expect = 5e-06
 Identities = 33/167 (19%), Positives = 60/167 (35%), Gaps = 20/167 (11%)

Query: 154 SLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNN 213
            L N     LG   +  + +     S +       ++   L          L  L L +N
Sbjct: 17  GLANAVKQNLGKQSVTDLVS-QKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHN 73

Query: 214 YLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKG 273
            ++          LS L +   L+ L ++ N+L  +        S  L + +  + EL  
Sbjct: 74  QISD---------LSPLKDLTKLEELSVNRNRLKNLNGIP----SACLSRLFLDNNEL-- 118

Query: 274 SIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQ 320
                + +L  L  L +++N L       +G L +L+ L L GN + 
Sbjct: 119 RDTDSLIHLKNLEILSIRNNKL--KSIVMLGFLSKLEVLDLHGNEIT 163

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 57.0 bits (138), Expect = 9e-10
 Identities = 46/154 (29%), Positives = 63/154 (40%), Gaps = 17/154 (11%)

Query: 167 KLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSF 226
           +  ++P  I   +   +L L  N  + L P  F +L  L  L LG+N L           
Sbjct: 30  RHASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPV----GV 83

Query: 227 LSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSL---QQFYAYDCELKGSIPQEIGNLN 283
             SLT    L VL L +NQL+  LP     F D L   ++ +    +L   +P+ I  L 
Sbjct: 84  FDSLTQ---LTVLDLGTNQLTV-LPS--AVF-DRLVHLKELFMCCNKLT-ELPRGIERLT 135

Query: 284 GLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGN 317
            L  L L  N L         RL  L   +LFGN
Sbjct: 136 HLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 53.5 bits (129), Expect = 1e-08
 Identities = 39/132 (29%), Positives = 55/132 (41%), Gaps = 6/132 (4%)

Query: 83  EQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENI-GNLSKLRSLVLGHKAHN 141
           + L L  N      P        L+ L+L  N+    LP  +  +L++L  L LG    N
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGT---N 98

Query: 142 SLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGN 201
            L   LPS +   L +LK L +  NKL  +P  I   + LT L L +N    +    F  
Sbjct: 99  QLTV-LPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDR 157

Query: 202 LRFLSLLDLGNN 213
           L  L+   L  N
Sbjct: 158 LSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 48.5 bits (116), Expect = 6e-07
 Identities = 45/139 (32%), Positives = 60/139 (43%), Gaps = 18/139 (12%)

Query: 104 TQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLAL 163
           T  Q L+L  N+ T   P    +L  L+ L LG    N L   LP  +  SL  L  L L
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLG---SNQLGA-LPVGVFDSLTQLTVLDL 95

Query: 164 GMNKLRTIPN----SITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRS 219
           G N+L  +P+     + +   L  L +  N  + L P     L  L+ L L  N L    
Sbjct: 96  GTNQLTVLPSAVFDRLVH---LKELFMCCNKLTEL-PRGIERLTHLTHLALDQNQLK--- 148

Query: 220 STTEWSF--LSSLTNCIYL 236
           S    +F  LSSLT+  YL
Sbjct: 149 SIPHGAFDRLSSLTH-AYL 166

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 54.7 bits (132), Expect = 3e-09
 Identities = 24/123 (19%), Positives = 36/123 (29%), Gaps = 12/123 (9%)

Query: 122 ENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASEL 181
               N  + R L L       +       L  +L     +    N++R +         L
Sbjct: 13  AQYTNAVRDRELDLRGYKIPVIEN-----LGATLDQFDAIDFSDNEIRKLDG-FPLLRRL 66

Query: 182 TLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGL 241
             L +  N    +       L  L+ L L NN L       E   L  L +   L  L +
Sbjct: 67  KTLLVNNNRICRIGEGLDQALPDLTELILTNNSL------VELGDLDPLASLKSLTYLCI 120

Query: 242 HSN 244
             N
Sbjct: 121 LRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 23/127 (18%), Positives = 48/127 (37%), Gaps = 11/127 (8%)

Query: 59  MIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTG 118
           M++L++  +  +             +L LR       I    +   Q   +    N+   
Sbjct: 1   MVKLTAELIEQAAQYT---NAVRDRELDLRGYKI-PVIENLGATLDQFDAIDFSDNEIR- 55

Query: 119 RLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNA 178
           +L +    L +L++L++    +N +   +   L  +LP+L  L L  N L  +   +   
Sbjct: 56  KL-DGFPLLRRLKTLLV---NNNRIC-RIGEGLDQALPDLTELILTNNSLVEL-GDLDPL 109

Query: 179 SELTLLE 185
           + L  L 
Sbjct: 110 ASLKSLT 116

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 55.4 bits (134), Expect = 4e-09
 Identities = 63/224 (28%), Positives = 86/224 (38%), Gaps = 48/224 (21%)

Query: 104 TQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLAL 163
            +     L+    T  + +N   L+ +  ++  +    S+ G         LPN+++LAL
Sbjct: 19  AETIKANLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQGIQ------YLPNVRYLAL 70

Query: 164 GMNKLRTIP--NSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSST 221
           G NKL  I     +TN   LT L L  N    L    F  L  L  L L  N L +    
Sbjct: 71  GGNKLHDISALKELTN---LTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPD- 126

Query: 222 TEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGN 281
                   LTN   L  L L  NQL   LP   G F D L                    
Sbjct: 127 ---GVFDKLTN---LTYLNLAHNQLQS-LPK--GVF-DKLTN------------------ 158

Query: 282 LNGLIDLRLQDNDLNGTIPTTV-GRLQQLQGLFLFGNNLQGSIP 324
              L +L L  N L  ++P  V  +L QL+ L L+ N L+ S+P
Sbjct: 159 ---LTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLK-SVP 197

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 40/131 (30%), Positives = 65/131 (49%), Gaps = 21/131 (16%)

Query: 51  FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSN-------GFFGQIPLSLSKC 103
              +++L  + L+ N L  SLPN + ++L +L++LVL  N       G F ++       
Sbjct: 81  LKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKL------- 132

Query: 104 TQLQHLWLEHNKFTGRLPENI-GNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLA 162
           T L +L L HN+    LP+ +   L+ L  L L +   N L   LP  +   L  LK L 
Sbjct: 133 TNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSY---NQLQS-LPEGVFDKLTQLKDLR 187

Query: 163 LGMNKLRTIPN 173
           L  N+L+++P+
Sbjct: 188 LYQNQLKSVPD 198

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 54.0 bits (129), Expect = 2e-08
 Identities = 23/95 (24%), Positives = 36/95 (37%), Gaps = 10/95 (10%)

Query: 154 SLPNLKWLAL-GMNKLRTIPN-SITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLG 211
              NL  L +     L+ +    +    EL  L + K+    + P+ F     LS L+L 
Sbjct: 29  GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88

Query: 212 NNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQL 246
            N L     +  W  +  L+    L+ L L  N L
Sbjct: 89  FNALE----SLSWKTVQGLS----LQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.8 bits (113), Expect = 2e-06
 Identities = 20/107 (18%), Positives = 34/107 (31%), Gaps = 5/107 (4%)

Query: 86  VLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPEN-IGNLSKLRSLVLGHKAHNSLH 144
           +  +          L     L  L++E+ +    L    +  L +LR+L +     + L 
Sbjct: 13  LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTI---VKSGLR 69

Query: 145 GHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSF 191
             +        P L  L L  N L ++         L  L L  N  
Sbjct: 70  -FVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.0 bits (98), Expect = 2e-04
 Identities = 15/94 (15%), Positives = 25/94 (26%), Gaps = 8/94 (8%)

Query: 166 NKLRTIPNSITNASELTLLEL-GKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEW 224
           +      + +  A  LT L +  +     L       L  L  L +  + L   +     
Sbjct: 18  DGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA-- 75

Query: 225 SFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFS 258
                      L  L L  N L  +    +   S
Sbjct: 76  --FHFTPR---LSRLNLSFNALESLSWKTVQGLS 104

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 40.9 bits (95), Expect = 4e-04
 Identities = 16/87 (18%), Positives = 25/87 (28%), Gaps = 1/87 (1%)

Query: 51  FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLW 110
                +L  + + +      L       L  L  L +  +G     P +     +L  L 
Sbjct: 27  LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86

Query: 111 LEHNKFTGRLPENIGNLSKLRSLVLGH 137
           L  N     L         L+ LVL  
Sbjct: 87  LSFNALE-SLSWKTVQGLSLQELVLSG 112

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 51.9 bits (125), Expect = 3e-08
 Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 7/89 (7%)

Query: 161 LALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSS 220
           L L  N+   +P  ++N   LTL++L  N  S L   +F N+  L  L L  N L     
Sbjct: 36  LYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR---C 92

Query: 221 TTEWSFLSSLTNCIYLKVLGLHSNQLSGI 249
               +F   L +   L++L LH N +S +
Sbjct: 93  IPPRTF-DGLKS---LRLLSLHGNDISVV 117

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 48.1 bits (115), Expect = 7e-07
 Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 6/108 (5%)

Query: 107 QHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMN 166
             L+L+ N+FT  +P+ + N   L  + L +   N +   L +    ++  L  L L  N
Sbjct: 34  TELYLDGNQFT-LVPKELSNYKHLTLIDLSN---NRI-STLSNQSFSNMTQLLTLILSYN 88

Query: 167 KLRTIPNSITNA-SELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNN 213
           +LR IP    +    L LL L  N  S +    F +L  LS L +G N
Sbjct: 89  RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 49.0 bits (117), Expect = 3e-07
 Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 10/122 (8%)

Query: 126 NLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLE 185
             + +R LVL +   N         L+    NL++L+L    L ++ N +    +L  LE
Sbjct: 22  TPAAVRELVLDNCKSNDGKI---EGLTAEFVNLEFLSLINVGLISVSN-LPKLPKLKKLE 77

Query: 186 LGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQ 245
           L +N   G +      L  L+ L+L  N L       + S L  L     LK L L + +
Sbjct: 78  LSENRIFGGLDMLAEKLPNLTHLNLSGNKL------KDISTLEPLKKLECLKSLDLFNCE 131

Query: 246 LS 247
           ++
Sbjct: 132 VT 133

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.1 bits (115), Expect = 4e-07
 Identities = 28/119 (23%), Positives = 46/119 (38%), Gaps = 10/119 (8%)

Query: 126 NLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLE 185
             S ++ LVL +   N         L+     L++L+     L +I N +   ++L  LE
Sbjct: 15  TPSDVKELVLDNSRSNEGKL---EGLTDEFEELEFLSTINVGLTSIAN-LPKLNKLKKLE 70

Query: 186 LGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSN 244
           L  N  SG +         L+ L+L  N +       + S +  L     LK L L + 
Sbjct: 71  LSDNRVSGGLEVLAEKCPNLTHLNLSGNKI------KDLSTIEPLKKLENLKSLDLFNC 123

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 47/155 (30%), Positives = 66/155 (42%), Gaps = 18/155 (11%)

Query: 167 KLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSF 226
              ++P  I   ++ T L+L  NS   L    F  L  L+ L LG N L +  +      
Sbjct: 18  GRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPN----GV 71

Query: 227 LSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSL---QQFYAYDCELKGSIPQEI-GNL 282
            + LT+   L  L L +NQL   LP   G F D L   ++      +L+ S+P  +   L
Sbjct: 72  FNKLTS---LTYLNLSTNQLQS-LPN--GVF-DKLTQLKELALNTNQLQ-SLPDGVFDKL 123

Query: 283 NGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGN 317
             L DLRL  N L         RL  LQ ++L  N
Sbjct: 124 TQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 46.2 bits (110), Expect = 3e-06
 Identities = 41/139 (29%), Positives = 55/139 (39%), Gaps = 17/139 (12%)

Query: 104 TQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLAL 163
            Q  +L LE N            L+ L  L LG     S    LP+ +   L +L +L L
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS----LPNGVFNKLTSLTYLNL 83

Query: 164 GMNKLRTIPN----SITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRS 219
             N+L+++PN     +T    L  L L  N    L    F  L  L  L L  N L    
Sbjct: 84  STNQLQSLPNGVFDKLTQ---LKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK--- 137

Query: 220 STTEWSF--LSSLTNCIYL 236
           S  +  F  L+SL   I+L
Sbjct: 138 SVPDGVFDRLTSLQY-IWL 155

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 45.8 bits (109), Expect = 5e-06
 Identities = 38/133 (28%), Positives = 57/133 (42%), Gaps = 7/133 (5%)

Query: 83  EQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGN-LSKLRSLVLGHKAHN 141
             L L +N           + T L  L+L  NK    LP  + N L+ L  L L     N
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLST---N 86

Query: 142 SLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSI-TNASELTLLELGKNSFSGLVPNTFG 200
            L   LP+ +   L  LK LAL  N+L+++P+ +    ++L  L L +N    +    F 
Sbjct: 87  QLQS-LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFD 145

Query: 201 NLRFLSLLDLGNN 213
            L  L  + L +N
Sbjct: 146 RLTSLQYIWLHDN 158

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 47.6 bits (112), Expect = 3e-06
 Identities = 27/175 (15%), Positives = 57/175 (32%), Gaps = 15/175 (8%)

Query: 57  LKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKF 116
              I      +S     DL   L ++  L          + +       L+ L +     
Sbjct: 146 WGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGL 205

Query: 117 TGRLPENIG--NLSKLRSLVLGHKAHNSLHGHLPSTLSV-----SLPNLKWLALGMNKLR 169
              + E+I   +L  L  LVL     +       +           PNLKWL +   + +
Sbjct: 206 PDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQ 265

Query: 170 T-IPNSITNA---SELTLLELGKNSFSG----LVPNTFGNLRFLSLLDLGNNYLT 216
             +      +    +L  +++     +     L+ +    ++ L  +++  NYL+
Sbjct: 266 NVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.9 bits (105), Expect = 2e-05
 Identities = 18/118 (15%), Positives = 39/118 (33%), Gaps = 15/118 (12%)

Query: 53  NISSLKMIRLSSNSLSGSLPNDLC-----NRLPSLEQLVLRSNGFFGQIPLSLSKC---T 104
           N+  L +     +       N        +R P+L+ L +        +     +     
Sbjct: 220 NLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILP 279

Query: 105 QLQHLWLEHNKFTGR----LPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNL 158
           QL+ + +     T      L +++  +  L+ + +    +N L   +   L  SLP  
Sbjct: 280 QLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMK---YNYLSDEMKKELQKSLPMK 334

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 45.0 bits (107), Expect = 7e-06
 Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 4/108 (3%)

Query: 107 QHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMN 166
             L L  N+      +  G   +L  LV      N L G +         +++ L LG N
Sbjct: 32  TELLLNDNELGRISSD--GLFGRLPHLVKLELKRNQLTG-IEPNAFEGASHIQELQLGEN 88

Query: 167 KLRTIPNSI-TNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNN 213
           K++ I N +     +L  L L  N  S ++P +F +L  L+ L+L +N
Sbjct: 89  KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 42.3 bits (100), Expect = 6e-05
 Identities = 33/118 (27%), Positives = 46/118 (38%), Gaps = 18/118 (15%)

Query: 161 LALGMNKLRTIPNSIT--NASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTR 218
           L L  N+L  I +         L  LEL +N  +G+ PN F     +  L LG N +   
Sbjct: 34  LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-- 91

Query: 219 SSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSD--SLQQFYAY----DCE 270
              +   F   L     LK L L+ NQ+S +  P  G+F    SL          +C 
Sbjct: 92  -EISNKMF-LGLHQ---LKTLNLYDNQISCV-MP--GSFEHLNSLTSLNLASNPFNCN 141

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 39.2 bits (92), Expect = 7e-04
 Identities = 34/153 (22%), Positives = 49/153 (32%), Gaps = 37/153 (24%)

Query: 167 KLRTIPNSITNASELTLLELGKNSFSGLVPN-TFGNLRFLSLLDLGNNYLTTRSSTTEWS 225
            L+ IP  I      T L L  N    +  +  FG L  L  L+L  N LT        +
Sbjct: 19  GLKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT---GIEPNA 73

Query: 226 FLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGL 285
           F    ++   ++ L L  N++   +      F   L Q                     L
Sbjct: 74  F-EGASH---IQELQLGENKIKE-ISN--KMF-LGLHQ---------------------L 104

Query: 286 IDLRLQDNDLNGTIPTTV-GRLQQLQGLFLFGN 317
             L L DN ++  +       L  L  L L  N
Sbjct: 105 KTLNLYDNQIS-CVMPGSFEHLNSLTSLNLASN 136

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 13/96 (13%)

Query: 147 LPSTLSVSLPNLKWLALGMNKLRTIPN----SITNASELTLLELGKNSFSGLVPNTFGNL 202
           LP  +   L  L  L+L  N+++++P+     +T    LT+L L +N    L    F  L
Sbjct: 43  LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTK---LTILYLHENKLQSLPNGVFDKL 99

Query: 203 RFLSLLDLGNNYLTTRSSTTEWSF--LSSLTNCIYL 236
             L  L L  N L    S  +  F  L+SL   I+L
Sbjct: 100 TQLKELALDTNQLK---SVPDGIFDRLTSLQK-IWL 131

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 39.9 bits (94), Expect = 3e-04
 Identities = 44/151 (29%), Positives = 54/151 (35%), Gaps = 34/151 (22%)

Query: 167 KLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSF 226
            L ++P  I   S  T LEL  N    L    F  L  L+ L L  N +    S  +  F
Sbjct: 18  GLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ---SLPDGVF 72

Query: 227 LSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLI 286
              LT    L +L LH N+L   LP   G F D L Q                     L 
Sbjct: 73  -DKLTK---LTILYLHENKLQS-LPN--GVF-DKLTQ---------------------LK 103

Query: 287 DLRLQDNDLNGTIPTTVGRLQQLQGLFLFGN 317
           +L L  N L         RL  LQ ++L  N
Sbjct: 104 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 48/240 (20%), Positives = 89/240 (37%), Gaps = 42/240 (17%)

Query: 80  PSLEQLVLRSNGF--FGQIPLS--LSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVL 135
           P L  + L  N F    Q PL   LSK T L+HL+L +N      P+    +++      
Sbjct: 94  PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG---PQAGAKIAR------ 144

Query: 136 GHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKL-----RTIPNSITNASELTLLELGKNS 190
                 +L     +  + + P L+ +  G N+L     +    +  +   L  +++ +N 
Sbjct: 145 ------ALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNG 198

Query: 191 F-----SGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQ 245
                   L+       + L +LDL +N  T   S+   +   +L +   L+ LGL+   
Sbjct: 199 IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSS---ALAIALKSWPNLRELGLNDCL 255

Query: 246 LS-----GILPPLIGNFSDSLQQFYAYDCELKGSIPQEIG-----NLNGLIDLRLQDNDL 295
           LS      ++       +  LQ       E++    + +       +  L+ L L  N  
Sbjct: 256 LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 47/258 (18%), Positives = 73/258 (28%), Gaps = 79/258 (30%)

Query: 52  YNISSL-KMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLW 110
            N   L  +I  S N L    P +       L   V   +     IP  L     L  +W
Sbjct: 350 VNCDKLTTIIESSLNVLE---PAEYRKMFDRLS--VFPPSA---HIPTIL-----LSLIW 396

Query: 111 LEHNKFTGRLPENIGNLSKLRSLVLGHKAHN--SLHG-HLPSTLSVSLPNLKWL------ 161
            +  K        + N     SLV      +  S+   +L   L V L N   L      
Sbjct: 397 FDVIKSD---VMVVVNKLHKYSLVEKQPKESTISIPSIYL--ELKVKLENEYALHRSIVD 451

Query: 162 ------ALGMNKLRTIPNSITN------ASELTLLELGKNSFSGLVPNTFGNLRFLSLLD 209
                     + L  IP  +           L  +E  +     L    F + RFL    
Sbjct: 452 HYNIPKTFDSDDL--IPPYLDQYFYSHIGHHLKNIEHPERM--TLFRMVFLDFRFLE--- 504

Query: 210 LGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDC 269
                +  R  +T W+   S+                            ++LQQ   Y  
Sbjct: 505 ---QKI--RHDSTAWNASGSIL---------------------------NTLQQLKFYKP 532

Query: 270 ELKGSIPQEIGNLNGLID 287
            +  + P+    +N ++D
Sbjct: 533 YICDNDPKYERLVNAILD 550

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	331
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.98
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.98
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.97
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.97
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.97
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.97
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.97
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.97
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.97
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.97
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.97
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.97
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.96
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.96
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.96
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.96
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.96
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.96
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.96
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.96
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.96
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.96
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.96
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.96
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.96
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.96
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.95
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.95
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.95
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.95
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.95
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.94
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.94
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.94
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.94
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.94
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.92
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.91
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.91
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.91
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.9
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.9
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.9
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.89
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.89
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.88
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.88
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.88
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.88
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.87
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.87
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.86
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.86
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.85
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.83
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.83
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.82
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.81
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.81
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.81
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.81
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.8
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.8
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.8
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.79
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.79
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.79
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.79
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.78
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.78
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.77
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.76
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.76
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.75
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.74
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.73
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.73
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.73
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.72
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.71
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.71
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.71
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.7
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.69
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.69
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.67
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.65
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.65
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.64
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.62
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.61
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.6
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.59
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.59
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.58
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.57
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.56
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.56
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.45
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.44
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.43
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.4
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.39
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.39
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.39
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.37
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.37
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.28
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.24
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.23
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.16
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.14
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.13
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.04
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.84
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.84
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.7
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.51
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.34
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.24
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.22
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.21
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.59
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.46
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.13
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.59
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	86.71
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	86.59

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=1.4e-34  Score=249.54  Aligned_cols=282  Identities=29%  Similarity=0.443  Sum_probs=242.2

Q ss_pred             cCChhhHHHHHHHHHhccCCCCCCCcc------h---------hcCC--CCccEEEcCCCcCcc--CCChhhhcCCCCCc
Q 036258           23 KNITTDQSALLAFKAHIADPYSVLTKN------C---------FYNI--SSLKMIRLSSNSLSG--SLPNDLCNRLPSLE   83 (331)
Q Consensus        23 ~~~~~~~~~l~~~~~~~~~~~~~~~~~------~---------~~~~--~~L~~L~l~~~~i~~--~~~~~~~~~~~~L~   83 (331)
                      .|.+.+..++.+||..+.+|. .+..|      |         -..-  .++++|+++++.+.+  .+|..+ ..+++|+
T Consensus         2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l-~~l~~L~   79 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL-ANLPYLN   79 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGG-GGCTTCS
T ss_pred             CCCHHHHHHHHHHHHhcCCcc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhH-hCCCCCC
Confidence            366778889999998887653 33333      1         1111  689999999999997  788766 7899999


Q ss_pred             EEEccC-CcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccccCccccccccccCCcchhcCCCCCcEEE
Q 036258           84 QLVLRS-NGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLA  162 (331)
Q Consensus        84 ~L~L~~-n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~  162 (331)
                      +|++++ |.+.+..|..|+.+++|++|++++|.+++.+|..+..+++|++|++++|..   .+.++..+. .+++|++|+
T Consensus        80 ~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l---~~~~p~~~~-~l~~L~~L~  155 (313)
T 1ogq_A           80 FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL---SGTLPPSIS-SLPNLVGIT  155 (313)
T ss_dssp             EEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEE---ESCCCGGGG-GCTTCCEEE
T ss_pred             eeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCcc---CCcCChHHh-cCCCCCeEE
Confidence            999995 889889999999999999999999999988999999999999999965554   444555444 899999999


Q ss_pred             cCCCCCC-CCcccccCCC-CCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEE
Q 036258          163 LGMNKLR-TIPNSITNAS-ELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLG  240 (331)
Q Consensus       163 l~~~~l~-~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~  240 (331)
                      +++|.+. .+|..+..++ .|++|++++|.+.+..|..+..+. |++|++++|.+..       ..+..+..+++|++|+
T Consensus       156 L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~-------~~~~~~~~l~~L~~L~  227 (313)
T 1ogq_A          156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEG-------DASVLFGSDKNTQKIH  227 (313)
T ss_dssp             CCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEE-------CCGGGCCTTSCCSEEE
T ss_pred             CcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccC-------cCCHHHhcCCCCCEEE
Confidence            9999998 7888899898 999999999999988898898887 9999999999986       3566788999999999


Q ss_pred             eecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEeccCCe-e
Q 036258          241 LHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNN-L  319 (331)
Q Consensus       241 l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~  319 (331)
                      +++|.+.+..+. +..++ +|++|++++|.+++.+|.++..+++|+.|++++|.+++.+|.. ..+++|+.+++++|+ +
T Consensus       228 L~~N~l~~~~~~-~~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~l  304 (313)
T 1ogq_A          228 LAKNSLAFDLGK-VGLSK-NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCL  304 (313)
T ss_dssp             CCSSEECCBGGG-CCCCT-TCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEE
T ss_pred             CCCCceeeecCc-ccccC-CCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCc
Confidence            999999866665 45454 9999999999999999999999999999999999999888886 889999999999999 6


Q ss_pred             ee
Q 036258          320 QG  321 (331)
Q Consensus       320 ~~  321 (331)
                      .|
T Consensus       305 c~  306 (313)
T 1ogq_A          305 CG  306 (313)
T ss_dssp             ES
T ss_pred             cC
Confidence            65

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.2e-33  Score=271.62  Aligned_cols=267  Identities=33%  Similarity=0.516  Sum_probs=229.7

Q ss_pred             CCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCccccccc
Q 036258           54 ISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSL  133 (331)
Q Consensus        54 ~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  133 (331)
                      +++|++|++++|.+.+.+|..+ ..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+..+++|++|
T Consensus       393 ~~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  471 (768)
T 3rgz_A          393 KNTLQELYLQNNGFTGKIPPTL-SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL  471 (768)
T ss_dssp             TCCCCEEECCSSEEEEECCGGG-GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred             cCCccEEECCCCccccccCHHH-hcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEE
Confidence            6788888888888886777666 778999999999999888888889999999999999999988888889999999999


Q ss_pred             ccCccccccccccCCcchhcCCCCCcEEEcCCCCCC-CCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccC
Q 036258          134 VLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLR-TIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGN  212 (331)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~  212 (331)
                      ++++|..   .+.++..+. .+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..|..+..+++|++|++++
T Consensus       472 ~L~~N~l---~~~~p~~l~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~  547 (768)
T 3rgz_A          472 ILDFNDL---TGEIPSGLS-NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT  547 (768)
T ss_dssp             ECCSSCC---CSCCCGGGG-GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCS
T ss_pred             EecCCcc---cCcCCHHHh-cCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCC
Confidence            9965544   444555544 8899999999999988 7788899999999999999999988899999999999999999


Q ss_pred             CcccCc-cCCC--------------------------------------------------------------ccccccc
Q 036258          213 NYLTTR-SSTT--------------------------------------------------------------EWSFLSS  229 (331)
Q Consensus       213 ~~l~~~-~~~~--------------------------------------------------------------~~~~~~~  229 (331)
                      |.+.+. +...                                                              .-..+..
T Consensus       548 N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~  627 (768)
T 3rgz_A          548 NLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT  627 (768)
T ss_dssp             SEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCS
T ss_pred             CccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchh
Confidence            987631 1100                                                              0012234


Q ss_pred             cccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCC
Q 036258          230 LTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQL  309 (331)
Q Consensus       230 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  309 (331)
                      +..+++|+.|++++|.+.+.+|..++.+. .|+.|+|++|.+++.+|..++.+++|+.|++++|.+++.+|..+..+++|
T Consensus       628 ~~~l~~L~~LdLs~N~l~g~ip~~l~~l~-~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L  706 (768)
T 3rgz_A          628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMP-YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML  706 (768)
T ss_dssp             CSSSBCCCEEECCSSCCBSCCCGGGGGCT-TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCC
T ss_pred             hhccccccEEECcCCcccccCCHHHhccc-cCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCC
Confidence            56678899999999999999999999888 99999999999999999999999999999999999999999999999999


Q ss_pred             CeEeccCCeeeecCCcc
Q 036258          310 QGLFLFGNNLQGSIPSD  326 (331)
Q Consensus       310 ~~L~l~~n~~~~~~p~~  326 (331)
                      ++|++++|+++|.||+.
T Consensus       707 ~~L~ls~N~l~g~iP~~  723 (768)
T 3rgz_A          707 TEIDLSNNNLSGPIPEM  723 (768)
T ss_dssp             SEEECCSSEEEEECCSS
T ss_pred             CEEECcCCcccccCCCc
Confidence            99999999999999974

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.4e-33  Score=271.34  Aligned_cols=241  Identities=35%  Similarity=0.577  Sum_probs=182.0

Q ss_pred             CCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccccCccccccccccCCcchhcCCCCC
Q 036258           79 LPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNL  158 (331)
Q Consensus        79 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L  158 (331)
                      +++|++|++++|.+.+..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.   +.+.++..+. .+++|
T Consensus       393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~---l~~~~p~~~~-~l~~L  468 (768)
T 3rgz_A          393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM---LEGEIPQELM-YVKTL  468 (768)
T ss_dssp             TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC---CCSCCCGGGG-GCTTC
T ss_pred             cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCc---ccCcCCHHHc-CCCCc
Confidence            3445555555555555555555666666666666666665666666666666666664333   3334444443 67778


Q ss_pred             cEEEcCCCCCC-CCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCc
Q 036258          159 KWLALGMNKLR-TIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLK  237 (331)
Q Consensus       159 ~~L~l~~~~l~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~  237 (331)
                      ++|++++|.+. .+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+..       .++..+..+++|+
T Consensus       469 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-------~~p~~l~~l~~L~  541 (768)
T 3rgz_A          469 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG-------NIPAELGDCRSLI  541 (768)
T ss_dssp             CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE-------ECCGGGGGCTTCC
T ss_pred             eEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccC-------cCCHHHcCCCCCC
Confidence            88888777776 566777777888888888888877777777778888888888887775       4667788899999


Q ss_pred             EEEeecccccccCCchhhhc------------------------------------------------------------
Q 036258          238 VLGLHSNQLSGILPPLIGNF------------------------------------------------------------  257 (331)
Q Consensus       238 ~L~l~~n~~~~~~~~~~~~~------------------------------------------------------------  257 (331)
                      +|++++|.+.+.+|..++..                                                            
T Consensus       542 ~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~  621 (768)
T 3rgz_A          542 WLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG  621 (768)
T ss_dssp             EEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEE
T ss_pred             EEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceec
Confidence            99999999887777655331                                                            


Q ss_pred             ---------cccccEEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEeccCCeeeecCCcccc
Q 036258          258 ---------SDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDLC  328 (331)
Q Consensus       258 ---------~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~  328 (331)
                               .++++.|++++|++++.+|..++.++.|+.|++++|.+++.+|..++.+++|+.|++++|+++|.+|+.+.
T Consensus       622 g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~  701 (768)
T 3rgz_A          622 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS  701 (768)
T ss_dssp             EECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGG
T ss_pred             ccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHh
Confidence                     13688999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             CC
Q 036258          329 HW  330 (331)
Q Consensus       329 ~~  330 (331)
                      ++
T Consensus       702 ~l  703 (768)
T 3rgz_A          702 AL  703 (768)
T ss_dssp             GC
T ss_pred             CC
Confidence            65

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.2e-32  Score=249.89  Aligned_cols=273  Identities=21%  Similarity=0.266  Sum_probs=196.1

Q ss_pred             CCCCCCcchhcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCC
Q 036258           42 PYSVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLP  121 (331)
Q Consensus        42 ~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  121 (331)
                      ....+....|.++++|++|++++|.+.+.++...|..+++|++|++++|.+.+..|..|+++++|++|++++|.+++..+
T Consensus        41 ~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  120 (455)
T 3v47_A           41 SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVL  120 (455)
T ss_dssp             CCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHH
T ss_pred             ccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCcccc
Confidence            33444445678888888888888877656666666778888888888888877777778888888888888887775444


Q ss_pred             cc--ccCcccccccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCC-cccccC---------------------
Q 036258          122 EN--IGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTI-PNSITN---------------------  177 (331)
Q Consensus       122 ~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~-~~~~~~---------------------  177 (331)
                      ..  +..+++|++|++++|....   ..+...+..+++|++|++++|.+..+ +..+..                     
T Consensus       121 ~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~  197 (455)
T 3v47_A          121 SGNFFKPLTSLEMLVLRDNNIKK---IQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNE  197 (455)
T ss_dssp             HSSTTTTCTTCCEEECCSSBCCS---CCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCST
T ss_pred             CcccccCcccCCEEECCCCccCc---cCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccch
Confidence            33  7777788888886554432   23333344677777777777766532 222211                     


Q ss_pred             -------------CC---------------------------------------------------------------CC
Q 036258          178 -------------AS---------------------------------------------------------------EL  181 (331)
Q Consensus       178 -------------l~---------------------------------------------------------------~L  181 (331)
                                   ++                                                               +|
T Consensus       198 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  277 (455)
T 3v47_A          198 YWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGV  277 (455)
T ss_dssp             TCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCC
T ss_pred             hhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCc
Confidence                         12                                                               44


Q ss_pred             ceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccc
Q 036258          182 TLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSL  261 (331)
Q Consensus       182 ~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L  261 (331)
                      +.|++++|.+.+..+..+..+++|++|++++|.+...       .+..+..+++|++|++++|.+.+..+..+..++ +|
T Consensus       278 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L  349 (455)
T 3v47_A          278 KTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI-------DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLD-KL  349 (455)
T ss_dssp             CEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE-------CTTTTTTCTTCCEEECCSSCCCEECGGGGTTCT-TC
T ss_pred             eEEEecCccccccchhhcccCCCCCEEECCCCccccc-------ChhHhcCcccCCEEECCCCccCCcChhHhcCcc-cC
Confidence            4555555555555566677778888888888877753       344577888888999988888877677777766 89


Q ss_pred             cEEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEeccCCeeeecCCc
Q 036258          262 QQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPS  325 (331)
Q Consensus       262 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~  325 (331)
                      +.|++++|.+.+..|.++.++++|+.|++++|.+++..+..+..+++|++|++++|++++.+|.
T Consensus       350 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          350 EVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence            9999999988877788888889999999999998865555678888999999999998888873

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.3e-31  Score=244.55  Aligned_cols=267  Identities=20%  Similarity=0.204  Sum_probs=168.2

Q ss_pred             CCCCCCCcchhcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccC
Q 036258           41 DPYSVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRL  120 (331)
Q Consensus        41 ~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~  120 (331)
                      +....+....|.++++|++|++++|.+. .++...|..+++|++|++++|.+....+..|.++++|++|++++|.+....
T Consensus        42 n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~  120 (477)
T 2id5_A           42 NRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILL  120 (477)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEEC
T ss_pred             CccceECHhHccCCCCCCEEECCCCccC-EeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCC
Confidence            3344444556888888888888888887 454444578888888888888887655566788888888888888888777


Q ss_pred             CccccCcccccccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCc-ccccCCCCCceeeCcCccccccCchhc
Q 036258          121 PENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIP-NSITNASELTLLELGKNSFSGLVPNTF  199 (331)
Q Consensus       121 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~l  199 (331)
                      +..+..+++|++|++++|....+    ....+..+++|++|++.+|.+..++ ..+..+++|+.|++++|.+....+..+
T Consensus       121 ~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~  196 (477)
T 2id5_A          121 DYMFQDLYNLKSLEVGDNDLVYI----SHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSF  196 (477)
T ss_dssp             TTTTTTCTTCCEEEECCTTCCEE----CTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCS
T ss_pred             hhHccccccCCEEECCCCcccee----ChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhc
Confidence            77788888888888866655433    2233447788888888888887665 457778888888888888877766677


Q ss_pred             cCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccc
Q 036258          200 GNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEI  279 (331)
Q Consensus       200 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l  279 (331)
                      ..+++|++|++++|....       .++.......+|++|++++|.+.+..+..+..++ +|+.|++++|.+.+..+..+
T Consensus       197 ~~l~~L~~L~l~~~~~~~-------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~  268 (477)
T 2id5_A          197 KRLYRLKVLEISHWPYLD-------TMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV-YLRFLNLSYNPISTIEGSML  268 (477)
T ss_dssp             CSCTTCCEEEEECCTTCC-------EECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCT-TCCEEECCSSCCCEECTTSC
T ss_pred             ccCcccceeeCCCCcccc-------ccCcccccCccccEEECcCCcccccCHHHhcCcc-ccCeeECCCCcCCccChhhc
Confidence            777777777777764433       1222222233455555555554422222333333 45555555555544444444


Q ss_pred             cCCCCCCEEEccCCCCcccCCcCccCCCCCCeEeccCCeee
Q 036258          280 GNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQ  320 (331)
Q Consensus       280 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  320 (331)
                      .++++|+.|++++|.+.+..+..|..+++|+.|++++|.++
T Consensus       269 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  309 (477)
T 2id5_A          269 HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT  309 (477)
T ss_dssp             TTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCS
T ss_pred             cccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCc
Confidence            44555555555555554444444444555555555555544

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.98  E-value=6e-31  Score=238.69  Aligned_cols=266  Identities=22%  Similarity=0.209  Sum_probs=206.1

Q ss_pred             CCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccc-cCCccCcCCCCCCEEEccCccccccCCccccCccccccc
Q 036258           55 SSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFG-QIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSL  133 (331)
Q Consensus        55 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  133 (331)
                      ++|++|++++|.+. .++...|..+++|++|++++|.+.+ ..+..|..+++|++|++++|.+++..|..+.++++|++|
T Consensus        30 ~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  108 (455)
T 3v47_A           30 AHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL  108 (455)
T ss_dssp             TTCCEEECCSSCCC-EECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred             CccCEEEecCCccC-cCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence            68999999999998 5544555899999999999998864 446779999999999999999998889999999999999


Q ss_pred             ccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCC-ccc-ccCCCCCceeeCcCccccccCchhccCC---------
Q 036258          134 VLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTI-PNS-ITNASELTLLELGKNSFSGLVPNTFGNL---------  202 (331)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~-~~~-~~~l~~L~~L~l~~n~~~~~~~~~l~~~---------  202 (331)
                      ++++|.....  ......+..+++|++|++++|.+..+ |.. +..+++|++|++++|.+.+..+..+..+         
T Consensus       109 ~L~~n~l~~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~  186 (455)
T 3v47_A          109 TLTQCNLDGA--VLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLR  186 (455)
T ss_dssp             ECTTSCCBTH--HHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEE
T ss_pred             eCCCCCCCcc--ccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccc
Confidence            9977665431  11123345789999999999999866 444 8899999999999999887666544432         


Q ss_pred             -------------------------CCCCEEEccCCcccCccC-------------------------------------
Q 036258          203 -------------------------RFLSLLDLGNNYLTTRSS-------------------------------------  220 (331)
Q Consensus       203 -------------------------~~L~~L~l~~~~l~~~~~-------------------------------------  220 (331)
                                               ++|++|++++|.+.....                                     
T Consensus       187 l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  266 (455)
T 3v47_A          187 LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDN  266 (455)
T ss_dssp             CTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCT
T ss_pred             cccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcc
Confidence                                     457777777775532000                                     


Q ss_pred             -------------------CCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccC
Q 036258          221 -------------------TTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGN  281 (331)
Q Consensus       221 -------------------~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~  281 (331)
                                         ......+..+..+++|++|++++|.+.+..+..+..+. +|+.|++++|.+.+..|..+.+
T Consensus       267 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~  345 (455)
T 3v47_A          267 FTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLT-HLLKLNLSQNFLGSIDSRMFEN  345 (455)
T ss_dssp             TTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCCEECGGGGTT
T ss_pred             cccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcc-cCCEEECCCCccCCcChhHhcC
Confidence                               00001244567778888888888888877777777766 8888888888888777788888


Q ss_pred             CCCCCEEEccCCCCcccCCcCccCCCCCCeEeccCCeeeecCCc
Q 036258          282 LNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPS  325 (331)
Q Consensus       282 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~  325 (331)
                      +++|++|++++|.+++..|..+..+++|++|++++|.++ .+|.
T Consensus       346 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~  388 (455)
T 3v47_A          346 LDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPD  388 (455)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-CCCT
T ss_pred             cccCCEEECCCCcccccChhhccccccccEEECCCCccc-cCCH
Confidence            888888888888888777788888888888888888888 4554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.98  E-value=1.2e-30  Score=244.92  Aligned_cols=262  Identities=21%  Similarity=0.242  Sum_probs=123.4

Q ss_pred             CccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCccccccccc
Q 036258           56 SLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVL  135 (331)
Q Consensus        56 ~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  135 (331)
                      +|++|++++|.+. .++...|..+++|++|++++|.+. .+|..+..+++|++|++++|.+....|..+..+++|++|++
T Consensus       255 ~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  332 (606)
T 3t6q_A          255 SVESINLQKHYFF-NISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI  332 (606)
T ss_dssp             EEEEEECTTCCCS-SCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEEC
T ss_pred             ceeEEEeecCccC-ccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEEC
Confidence            4455555555554 344443444555555555555444 34444455555555555555554444444445555555555


Q ss_pred             CccccccccccCCcchhcCCCCCcEEEcCCCCCCCC---cccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccC
Q 036258          136 GHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTI---PNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGN  212 (331)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~---~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~  212 (331)
                      ++|.   +.+.++...+..+++|++|++++|.+..+   +..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus       333 ~~n~---~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  409 (606)
T 3t6q_A          333 KGNT---KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAF  409 (606)
T ss_dssp             CSCS---SCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTT
T ss_pred             CCCC---cccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCC
Confidence            3322   22223333333444455555554444422   23344444455555544444444444444444444444444


Q ss_pred             CcccCccCCC------------------ccccccccccCCCCcEEEeeccccccc---CCchhhhccccccEEEeccCcc
Q 036258          213 NYLTTRSSTT------------------EWSFLSSLTNCIYLKVLGLHSNQLSGI---LPPLIGNFSDSLQQFYAYDCEL  271 (331)
Q Consensus       213 ~~l~~~~~~~------------------~~~~~~~~~~~~~L~~L~l~~n~~~~~---~~~~~~~~~~~L~~L~l~~~~~  271 (331)
                      |.+.......                  ....+..+..+++|++|++++|.+.+.   .+..+..++ +|+.|++++|.+
T Consensus       410 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~-~L~~L~Ls~n~l  488 (606)
T 3t6q_A          410 TRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLG-RLEILVLSFCDL  488 (606)
T ss_dssp             CCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCT-TCCEEECTTSCC
T ss_pred             CcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCC-CccEEECCCCcc
Confidence            4443321000                  001223344555555555555555431   112333333 555555555555


Q ss_pred             cccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEeccCCeeeecCC
Q 036258          272 KGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIP  324 (331)
Q Consensus       272 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p  324 (331)
                      ++..|.++..+++|+.|++++|.+++..|+.+..+++| .|++++|.+++..|
T Consensus       489 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~  540 (606)
T 3t6q_A          489 SSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILP  540 (606)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCG
T ss_pred             CccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCH
Confidence            55555555555555555555555555555555555555 55555555553333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.97  E-value=1.2e-30  Score=238.21  Aligned_cols=263  Identities=22%  Similarity=0.203  Sum_probs=228.1

Q ss_pred             CCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccc
Q 036258           55 SSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLV  134 (331)
Q Consensus        55 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  134 (331)
                      +++++|++++|.++ .++...|..+++|++|+|++|.+.+..|..|.++++|++|++++|.++...+..|.++++|++|+
T Consensus        32 ~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  110 (477)
T 2id5_A           32 TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD  110 (477)
T ss_dssp             TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred             CCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence            57999999999998 66666668999999999999999988899999999999999999999966666789999999999


Q ss_pred             cCccccccccccCCcchhcCCCCCcEEEcCCCCCCCC-cccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCC
Q 036258          135 LGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTI-PNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNN  213 (331)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~  213 (331)
                      +++|.....    ....+..+++|++|++++|.+..+ +..+..+++|++|++++|.+....+..+..+++|+.|++++|
T Consensus       111 Ls~n~i~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  186 (477)
T 2id5_A          111 ISENKIVIL----LDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL  186 (477)
T ss_dssp             CTTSCCCEE----CTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESC
T ss_pred             CCCCccccC----ChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCC
Confidence            977766533    233445899999999999998854 467899999999999999999887788999999999999999


Q ss_pred             cccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCC
Q 036258          214 YLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDN  293 (331)
Q Consensus       214 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n  293 (331)
                      .+..+.       +..+..+++|++|++++|...+.++....... +|+.|++++|.+++..+..+.++++|+.|++++|
T Consensus       187 ~i~~~~-------~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n  258 (477)
T 2id5_A          187 NINAIR-------DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL-NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN  258 (477)
T ss_dssp             CCCEEC-------TTCSCSCTTCCEEEEECCTTCCEECTTTTTTC-CCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSS
T ss_pred             cCcEeC-------hhhcccCcccceeeCCCCccccccCcccccCc-cccEEECcCCcccccCHHHhcCccccCeeECCCC
Confidence            988743       34588999999999999988777777766665 9999999999998544467899999999999999


Q ss_pred             CCcccCCcCccCCCCCCeEeccCCeeeecCCccccCC
Q 036258          294 DLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDLCHW  330 (331)
Q Consensus       294 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~  330 (331)
                      .+++..+..+..+++|++|++++|.+++..|..+.++
T Consensus       259 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  295 (477)
T 2id5_A          259 PISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGL  295 (477)
T ss_dssp             CCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTC
T ss_pred             cCCccChhhccccccCCEEECCCCccceECHHHhcCc
Confidence            9997777889999999999999999998778777654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=8.2e-31  Score=226.04  Aligned_cols=233  Identities=27%  Similarity=0.421  Sum_probs=209.0

Q ss_pred             CCCcEEEccCCcccc--cCCccCcCCCCCCEEEccC-ccccccCCccccCcccccccccCccccccccccCCcchhcCCC
Q 036258           80 PSLEQLVLRSNGFFG--QIPLSLSKCTQLQHLWLEH-NKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLP  156 (331)
Q Consensus        80 ~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~  156 (331)
                      .+++.|++++|.+.+  .+|..+..+++|++|++++ |.+.+.+|..+.++++|++|++++|...   +.++..+. .++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~---~~~p~~~~-~l~  125 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS---GAIPDFLS-QIK  125 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCE---EECCGGGG-GCT
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeC---CcCCHHHh-CCC
Confidence            689999999999988  8899999999999999995 8998899999999999999999665543   44555444 899


Q ss_pred             CCcEEEcCCCCCC-CCcccccCCCCCceeeCcCccccccCchhccCCC-CCCEEEccCCcccCccCCCccccccccccCC
Q 036258          157 NLKWLALGMNKLR-TIPNSITNASELTLLELGKNSFSGLVPNTFGNLR-FLSLLDLGNNYLTTRSSTTEWSFLSSLTNCI  234 (331)
Q Consensus       157 ~L~~L~l~~~~l~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~-~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~  234 (331)
                      +|++|++++|.+. .+|..+..+++|++|++++|.+.+..|..+..++ .|++|++++|.+..       ..+..+..++
T Consensus       126 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~-------~~~~~~~~l~  198 (313)
T 1ogq_A          126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG-------KIPPTFANLN  198 (313)
T ss_dssp             TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEE-------ECCGGGGGCC
T ss_pred             CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeec-------cCChHHhCCc
Confidence            9999999999998 7888999999999999999999988899999988 99999999999986       3566677777


Q ss_pred             CCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEec
Q 036258          235 YLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFL  314 (331)
Q Consensus       235 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l  314 (331)
                       |++|++++|.+.+..|..+..++ +|+.|++++|.+.+..|. +..+++|++|++++|.+++.+|..+..+++|++|++
T Consensus       199 -L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L  275 (313)
T 1ogq_A          199 -LAFVDLSRNMLEGDASVLFGSDK-NTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV  275 (313)
T ss_dssp             -CSEEECCSSEEEECCGGGCCTTS-CCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEEC
T ss_pred             -ccEEECcCCcccCcCCHHHhcCC-CCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEEC
Confidence             99999999999988888888777 999999999999866555 888999999999999999999999999999999999


Q ss_pred             cCCeeeecCCcc
Q 036258          315 FGNNLQGSIPSD  326 (331)
Q Consensus       315 ~~n~~~~~~p~~  326 (331)
                      ++|+++|.+|+.
T Consensus       276 s~N~l~~~ip~~  287 (313)
T 1ogq_A          276 SFNNLCGEIPQG  287 (313)
T ss_dssp             CSSEEEEECCCS
T ss_pred             cCCcccccCCCC
Confidence            999999999975

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.97  E-value=3.5e-30  Score=229.07  Aligned_cols=256  Identities=19%  Similarity=0.193  Sum_probs=135.5

Q ss_pred             CCcchhcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCcccc
Q 036258           46 LTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIG  125 (331)
Q Consensus        46 ~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~  125 (331)
                      ++...|..+++|++|++++|.+. .++...|..+++|++|++++|.+.+..|..|+.+++|++|++++|.++...+..+.
T Consensus        60 l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~  138 (390)
T 3o6n_A           60 LPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFH  138 (390)
T ss_dssp             ECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             CChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhc
Confidence            33344556666666666666665 44444445666666666666666555555566666666666666666533333345


Q ss_pred             CcccccccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccC-ch-------
Q 036258          126 NLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLV-PN-------  197 (331)
Q Consensus       126 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~-------  197 (331)
                      .+++|++|++++|....    ++...+..+++|++|++++|.++.++  +..+++|+.+++++|.+.... +.       
T Consensus       139 ~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l  212 (390)
T 3o6n_A          139 NTPKLTTLSMSNNNLER----IEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDA  212 (390)
T ss_dssp             TCTTCCEEECCSSCCCB----CCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCSEEECCSSCSEEEC
T ss_pred             CCCCCcEEECCCCccCc----cChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccccccccCCCCcceEEEC
Confidence            56666666665444432    22222335566666666666655432  222333333333333222100 00       


Q ss_pred             --------hccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccC
Q 036258          198 --------TFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDC  269 (331)
Q Consensus       198 --------~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~  269 (331)
                              .....++|++|++++|.+..         ...+..+++|++|++++|.+.+..|..+..++ +|+.|++++|
T Consensus       213 ~~n~l~~~~~~~~~~L~~L~l~~n~l~~---------~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n  282 (390)
T 3o6n_A          213 SHNSINVVRGPVNVELTILKLQHNNLTD---------TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ-RLERLYISNN  282 (390)
T ss_dssp             CSSCCCEEECCCCSSCCEEECCSSCCCC---------CGGGGGCTTCSEEECCSSCCCEEESGGGTTCS-SCCEEECCSS
T ss_pred             CCCeeeeccccccccccEEECCCCCCcc---------cHHHcCCCCccEEECCCCcCCCcChhHccccc-cCCEEECCCC
Confidence                    00011234444444444432         12355666666666666666665566665555 6666666666


Q ss_pred             cccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEeccCCeee
Q 036258          270 ELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQ  320 (331)
Q Consensus       270 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  320 (331)
                      .+++ +|..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.++
T Consensus       283 ~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~  331 (390)
T 3o6n_A          283 RLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV  331 (390)
T ss_dssp             CCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC
T ss_pred             cCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccc
Confidence            6653 4444555666666666666666 45555555666666666666665

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=1.4e-29  Score=220.21  Aligned_cols=242  Identities=21%  Similarity=0.315  Sum_probs=122.4

Q ss_pred             CccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCccccccccc
Q 036258           56 SLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVL  135 (331)
Q Consensus        56 ~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  135 (331)
                      ++++++++++.+. .+|..+   .+++++|++++|.+.+..+..|..+++|++|++++|.+++..|..+..+++|++|++
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence            4556666665555 555433   345666666666655444445556666666666666655444555566666666666


Q ss_pred             CccccccccccCCcchhcCCCCCcEEEcCCCCCCCCc-ccccCCCCCceeeCcCccccc--cCchhccCCCCCCEEEccC
Q 036258          136 GHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIP-NSITNASELTLLELGKNSFSG--LVPNTFGNLRFLSLLDLGN  212 (331)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~n~~~~--~~~~~l~~~~~L~~L~l~~  212 (331)
                      ++|....+    +..+   .++|++|++++|.+..++ ..+..+++|+.|++++|.+..  ..+..+..+++|++|++++
T Consensus       108 s~n~l~~l----~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~  180 (330)
T 1xku_A          108 SKNQLKEL----PEKM---PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD  180 (330)
T ss_dssp             CSSCCSBC----CSSC---CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS
T ss_pred             CCCcCCcc----Chhh---cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCC
Confidence            55444322    2221   145555555555555443 335555555555555555532  3344455555555555555


Q ss_pred             CcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccC
Q 036258          213 NYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQD  292 (331)
Q Consensus       213 ~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  292 (331)
                      |.+..++..        +  .++|++|++++|.+.+..+..+..++ +|+.|++++|.+.+..+..+..+++|+.|++++
T Consensus       181 n~l~~l~~~--------~--~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  249 (330)
T 1xku_A          181 TNITTIPQG--------L--PPSLTELHLDGNKITKVDAASLKGLN-NLAKLGLSFNSISAVDNGSLANTPHLRELHLNN  249 (330)
T ss_dssp             SCCCSCCSS--------C--CTTCSEEECTTSCCCEECTGGGTTCT-TCCEEECCSSCCCEECTTTGGGSTTCCEEECCS
T ss_pred             CccccCCcc--------c--cccCCEEECCCCcCCccCHHHhcCCC-CCCEEECCCCcCceeChhhccCCCCCCEEECCC
Confidence            555543211        1  13445555555544444444444443 455555555544444444444444555555555


Q ss_pred             CCCcccCCcCccCCCCCCeEeccCCeee
Q 036258          293 NDLNGTIPTTVGRLQQLQGLFLFGNNLQ  320 (331)
Q Consensus       293 n~l~~~~~~~l~~l~~L~~L~l~~n~~~  320 (331)
                      |.++ .+|..+..+++|++|++++|+++
T Consensus       250 N~l~-~lp~~l~~l~~L~~L~l~~N~i~  276 (330)
T 1xku_A          250 NKLV-KVPGGLADHKYIQVVYLHNNNIS  276 (330)
T ss_dssp             SCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred             CcCc-cCChhhccCCCcCEEECCCCcCC
Confidence            5444 44444444445555555555544

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.97  E-value=3.8e-30  Score=241.59  Aligned_cols=275  Identities=25%  Similarity=0.286  Sum_probs=201.3

Q ss_pred             CCCCCCcchhcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCC
Q 036258           42 PYSVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLP  121 (331)
Q Consensus        42 ~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  121 (331)
                      ....++...|.++++|++|++++|.++ .+|..+ ..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.++
T Consensus       265 ~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  342 (606)
T 3t6q_A          265 YFFNISSNTFHCFSGLQELDLTATHLS-ELPSGL-VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG  342 (606)
T ss_dssp             CCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSC-CSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCC
T ss_pred             ccCccCHHHhccccCCCEEeccCCccC-CCChhh-cccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccc
Confidence            344455556788888888888888887 777765 667888888888887776656666677777777777766553333


Q ss_pred             c-cccCcccccccccCcccccccc----------------------ccCCcchhcCCCCCcEEEcCCCCCCCC-c-cccc
Q 036258          122 E-NIGNLSKLRSLVLGHKAHNSLH----------------------GHLPSTLSVSLPNLKWLALGMNKLRTI-P-NSIT  176 (331)
Q Consensus       122 ~-~~~~l~~L~~L~l~~~~~~~~~----------------------~~~~~~~~~~l~~L~~L~l~~~~l~~~-~-~~~~  176 (331)
                      . .+..+++|++|++++|......                      ..++...+..+++|++|++++|.+... + ..+.
T Consensus       343 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  422 (606)
T 3t6q_A          343 TGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQ  422 (606)
T ss_dssp             SSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTT
T ss_pred             hhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhh
Confidence            3 3555666666666554433221                      011122333566666666666665532 2 3366


Q ss_pred             CCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhh
Q 036258          177 NASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGN  256 (331)
Q Consensus       177 ~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~  256 (331)
                      .+++|+.|++++|.+.+..+..+..+++|++|++++|.+.....    ..+..+..+++|++|++++|.+.+..|..+..
T Consensus       423 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  498 (606)
T 3t6q_A          423 NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNI----QKTNSLQTLGRLEILVLSFCDLSSIDQHAFTS  498 (606)
T ss_dssp             TCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEE----CSSCGGGGCTTCCEEECTTSCCCEECTTTTTT
T ss_pred             CcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCcccc----ccchhhccCCCccEEECCCCccCccChhhhcc
Confidence            67777777777777766666777777788888888887764210    12245888999999999999999888888888


Q ss_pred             ccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEeccCCeeeecCC
Q 036258          257 FSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIP  324 (331)
Q Consensus       257 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p  324 (331)
                      ++ +|+.|++++|++++..|..+..++.| .|++++|.+++..|..+..+++|+.|++++|+++..++
T Consensus       499 l~-~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          499 LK-MMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             CT-TCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             cc-CCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            87 99999999999999999999999999 99999999998778888999999999999999997765

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.97  E-value=4.9e-30  Score=240.86  Aligned_cols=169  Identities=21%  Similarity=0.197  Sum_probs=90.8

Q ss_pred             CCCcEEEcCCCCCCCC---cccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccC-CC---------
Q 036258          156 PNLKWLALGMNKLRTI---PNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSS-TT---------  222 (331)
Q Consensus       156 ~~L~~L~l~~~~l~~~---~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~-~~---------  222 (331)
                      ++|++|++++|.+...   +..+..+++|++|++++|.+... +..+..+++|++|++++|.+..... ..         
T Consensus       350 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  428 (606)
T 3vq2_A          350 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM-SANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY  428 (606)
T ss_dssp             TTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEE-CCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCE
T ss_pred             CCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccc-hhhccCCCCCCeeECCCCccCCccChhhhhccccCCE
Confidence            4455555555544422   44455566677777777666543 3455556666666666665554311 00         


Q ss_pred             --------ccccccccccCCCCcEEEeecccccc-cCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCC
Q 036258          223 --------EWSFLSSLTNCIYLKVLGLHSNQLSG-ILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDN  293 (331)
Q Consensus       223 --------~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n  293 (331)
                              ....+..+..+++|++|++++|.+.+ ..|..+..++ +|+.|++++|.+++..|..+.++++|++|++++|
T Consensus       429 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N  507 (606)
T 3vq2_A          429 LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTT-NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN  507 (606)
T ss_dssp             EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCC-CCCEEECCCCcCCccChhhhcccccCCEEECCCC
Confidence                    00123334455555555555555554 2444444444 5666666666665555555566666666666666


Q ss_pred             CCcccCCcCccCCCCCCeEeccCCeeeecCCccc
Q 036258          294 DLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDL  327 (331)
Q Consensus       294 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~  327 (331)
                      .+++..|..+..+++|++|++++|+++ .+|+.+
T Consensus       508 ~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~  540 (606)
T 3vq2_A          508 NLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGIL  540 (606)
T ss_dssp             CCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCG
T ss_pred             cCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhH
Confidence            665555555556666666666666655 555543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.97  E-value=1.1e-30  Score=245.92  Aligned_cols=266  Identities=21%  Similarity=0.287  Sum_probs=156.3

Q ss_pred             hhcCCCCccEEEcCCCc-Ccc-CCChhhhcCC------CCCcEEEccCCcccccCCc--cCcCCCCCCEEEccCcccccc
Q 036258           50 CFYNISSLKMIRLSSNS-LSG-SLPNDLCNRL------PSLEQLVLRSNGFFGQIPL--SLSKCTQLQHLWLEHNKFTGR  119 (331)
Q Consensus        50 ~~~~~~~L~~L~l~~~~-i~~-~~~~~~~~~~------~~L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~l~~n~~~~~  119 (331)
                      .|.++++|++|++++|. +++ .+|..+ ..+      ++|++|++++|.+. .+|.  .++.+++|++|++++|.+++.
T Consensus       268 ~l~~l~~L~~L~Ls~n~~l~~~~lp~~~-~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~  345 (636)
T 4eco_A          268 FLKALPEMQLINVACNRGISGEQLKDDW-QALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGK  345 (636)
T ss_dssp             TTTTCSSCCEEECTTCTTSCHHHHHHHH-HHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEE
T ss_pred             HHhcCCCCCEEECcCCCCCccccchHHH-HhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccc
Confidence            45666666666666665 654 455544 222      56666666666665 5555  566666666666666666655


Q ss_pred             CCccccCcccccccccCccccccccccCCcchhcCCCC-CcEEEcCCCCCCCCcccccCCC--CCceeeCcCccccccCc
Q 036258          120 LPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPN-LKWLALGMNKLRTIPNSITNAS--ELTLLELGKNSFSGLVP  196 (331)
Q Consensus       120 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~-L~~L~l~~~~l~~~~~~~~~l~--~L~~L~l~~n~~~~~~~  196 (331)
                      +| .+..+++|++|++++|...    .++..+. .+++ |++|++++|.+..+|..+....  +|+.|++++|.+.+..|
T Consensus       346 ip-~~~~l~~L~~L~L~~N~l~----~lp~~l~-~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p  419 (636)
T 4eco_A          346 LP-AFGSEIKLASLNLAYNQIT----EIPANFC-GFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDG  419 (636)
T ss_dssp             CC-CCEEEEEESEEECCSSEEE----ECCTTSE-EECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTT
T ss_pred             hh-hhCCCCCCCEEECCCCccc----cccHhhh-hhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcch
Confidence            55 5556666666666544433    2333322 4555 6666666666665554444332  45555555554444333


Q ss_pred             hh-------------------------------ccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeeccc
Q 036258          197 NT-------------------------------FGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQ  245 (331)
Q Consensus       197 ~~-------------------------------l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~  245 (331)
                      ..                               +..+++|++|++++|.+..++..........+.++++|++|++++|.
T Consensus       420 ~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~  499 (636)
T 4eco_A          420 KNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK  499 (636)
T ss_dssp             CSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSC
T ss_pred             hhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCc
Confidence            33                               33445555555555555543322100000111223377777777777


Q ss_pred             ccccCCchhh--hccccccEEEeccCcccccCCccccCCCCCCEEEc------cCCCCcccCCcCccCCCCCCeEeccCC
Q 036258          246 LSGILPPLIG--NFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRL------QDNDLNGTIPTTVGRLQQLQGLFLFGN  317 (331)
Q Consensus       246 ~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l------~~n~l~~~~~~~l~~l~~L~~L~l~~n  317 (331)
                      +. .+|..+.  .++ +|+.|++++|.+++ +|..+..+++|+.|++      ++|.+.+.+|..+..+++|++|++++|
T Consensus       500 l~-~lp~~~~~~~l~-~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N  576 (636)
T 4eco_A          500 LT-KLSDDFRATTLP-YLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN  576 (636)
T ss_dssp             CC-BCCGGGSTTTCT-TCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS
T ss_pred             CC-ccChhhhhccCC-CcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC
Confidence            76 5666655  444 77777777777775 7777777777888877      456666677777777788888888888


Q ss_pred             eeeecCCccc
Q 036258          318 NLQGSIPSDL  327 (331)
Q Consensus       318 ~~~~~~p~~~  327 (331)
                      .+ +.+|..+
T Consensus       577 ~l-~~ip~~~  585 (636)
T 4eco_A          577 DI-RKVNEKI  585 (636)
T ss_dssp             CC-CBCCSCC
T ss_pred             cC-CccCHhH
Confidence            87 4777654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.97  E-value=1.4e-29  Score=237.68  Aligned_cols=98  Identities=18%  Similarity=0.075  Sum_probs=51.4

Q ss_pred             ccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccc-cCCccccCCCCCCEEEccCCCCcccCCcCccCCCCC
Q 036258          231 TNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKG-SIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQL  309 (331)
Q Consensus       231 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  309 (331)
                      ..+++|++|++++|.+.+..|..+..++ +|++|++++|.+.+ .+|..+..+++|+.|++++|.+++..|..+..+++|
T Consensus       421 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  499 (606)
T 3vq2_A          421 LSLEKLLYLDISYTNTKIDFDGIFLGLT-SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRL  499 (606)
T ss_dssp             TTCTTCCEEECTTSCCEECCTTTTTTCT-TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             hccccCCEEECcCCCCCccchhhhcCCC-CCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccC
Confidence            3344444444444444444444444443 55555555555554 245555555556666666665555555555556666


Q ss_pred             CeEeccCCeeeecCCccccC
Q 036258          310 QGLFLFGNNLQGSIPSDLCH  329 (331)
Q Consensus       310 ~~L~l~~n~~~~~~p~~~~~  329 (331)
                      ++|++++|++++.+|..+.+
T Consensus       500 ~~L~Ls~N~l~~~~~~~~~~  519 (606)
T 3vq2_A          500 QLLNMSHNNLLFLDSSHYNQ  519 (606)
T ss_dssp             CEEECCSSCCSCEEGGGTTT
T ss_pred             CEEECCCCcCCCcCHHHccC
Confidence            66666666665555555544

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.97  E-value=4.1e-30  Score=222.96  Aligned_cols=266  Identities=21%  Similarity=0.284  Sum_probs=180.1

Q ss_pred             cCChhhHHHHHHHHHhc-cCCCCCCCcch-------------------------hcCCCCccEEEcCCCcCccCCChhhh
Q 036258           23 KNITTDQSALLAFKAHI-ADPYSVLTKNC-------------------------FYNISSLKMIRLSSNSLSGSLPNDLC   76 (331)
Q Consensus        23 ~~~~~~~~~l~~~~~~~-~~~~~~~~~~~-------------------------~~~~~~L~~L~l~~~~i~~~~~~~~~   76 (331)
                      .+...++.++..|+..+ .++......||                         ....+++++|+++++.+. .+|..+ 
T Consensus        23 ~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l-  100 (328)
T 4fcg_A           23 TALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQA-  100 (328)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCG-
T ss_pred             ccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhh-
Confidence            34567788999999877 36655555664                         123467778888887777 777766 


Q ss_pred             cCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccccCccccccccccCCcchhcCCC
Q 036258           77 NRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLP  156 (331)
Q Consensus        77 ~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~  156 (331)
                      ..+++|++|++++|.+. .+|..++.+++|++|++++|.++ .+|..+..+++|++|++++|.   ..+.++..+. .  
T Consensus       101 ~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~---~~~~~p~~~~-~--  172 (328)
T 4fcg_A          101 FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACP---ELTELPEPLA-S--  172 (328)
T ss_dssp             GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEET---TCCCCCSCSE-E--
T ss_pred             hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCC---CccccChhHh-h--
Confidence            34778888888887776 66777777788888888887777 667777777777777775432   2223333221 0  


Q ss_pred             CCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCC
Q 036258          157 NLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYL  236 (331)
Q Consensus       157 ~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L  236 (331)
                          .        .++..+..+++|++|++++|.+. ..|..+..+++|++|++++|.+..        ++..+..+++|
T Consensus       173 ----~--------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~--------l~~~l~~l~~L  231 (328)
T 4fcg_A          173 ----T--------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA--------LGPAIHHLPKL  231 (328)
T ss_dssp             ----E--------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC--------CCGGGGGCTTC
T ss_pred             ----c--------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc--------CchhhccCCCC
Confidence                0        11122444666777777776666 445556666777777777776664        23346667777


Q ss_pred             cEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEeccC
Q 036258          237 KVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFG  316 (331)
Q Consensus       237 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~  316 (331)
                      ++|++++|.+.+.+|..+..++ +|+.|++++|.+.+.+|..+.++++|+.|++++|.+.+.+|..+..+++|+.+++..
T Consensus       232 ~~L~Ls~n~~~~~~p~~~~~l~-~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~  310 (328)
T 4fcg_A          232 EELDLRGCTALRNYPPIFGGRA-PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP  310 (328)
T ss_dssp             CEEECTTCTTCCBCCCCTTCCC-CCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred             CEEECcCCcchhhhHHHhcCCC-CCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence            7777777777667777666665 777777777777777777777777888888888777777777777777788777776


Q ss_pred             Ceee
Q 036258          317 NNLQ  320 (331)
Q Consensus       317 n~~~  320 (331)
                      +.+.
T Consensus       311 ~~~~  314 (328)
T 4fcg_A          311 HLQA  314 (328)
T ss_dssp             GGSC
T ss_pred             HHHH
Confidence            6654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.97  E-value=8e-30  Score=240.08  Aligned_cols=251  Identities=22%  Similarity=0.263  Sum_probs=190.7

Q ss_pred             hhcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCC-CCEEEccCccccccCCccccCcc
Q 036258           50 CFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQ-LQHLWLEHNKFTGRLPENIGNLS  128 (331)
Q Consensus        50 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~l~  128 (331)
                      .|.++++|++|++++|.+.+.+|  .|..+++|++|++++|.+. .+|..+..+++ |++|++++|.++ .+|..+..++
T Consensus       325 ~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~  400 (636)
T 4eco_A          325 SLQKMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKS  400 (636)
T ss_dssp             HHTTCTTCCEEECCSCCCEEECC--CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTC
T ss_pred             hhccCCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcc
Confidence            56667777777777777766666  3366677777777777666 56666777777 777777777776 5666655543


Q ss_pred             --cccccccCccccccccccCCcchh------cCCCCCcEEEcCCCCCCCCccc-ccCCCCCceeeCcCccccccCchhc
Q 036258          129 --KLRSLVLGHKAHNSLHGHLPSTLS------VSLPNLKWLALGMNKLRTIPNS-ITNASELTLLELGKNSFSGLVPNTF  199 (331)
Q Consensus       129 --~L~~L~l~~~~~~~~~~~~~~~~~------~~l~~L~~L~l~~~~l~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~l  199 (331)
                        +|++|++++|....   ..+..+.      ..+++|++|++++|.+..+|.. +..+++|++|++++|.+....+..+
T Consensus       401 l~~L~~L~Ls~N~l~~---~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~  477 (636)
T 4eco_A          401 VSVMSAIDFSYNEIGS---VDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSL  477 (636)
T ss_dssp             SSCEEEEECCSSCTTT---TTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSS
T ss_pred             cCccCEEECcCCcCCC---cchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHh
Confidence              67777775554432   2221111      0456899999999999988754 4568999999999999985544444


Q ss_pred             cCC-------CCCCEEEccCCcccCccCCCccccccccc--cCCCCcEEEeecccccccCCchhhhccccccEEEe----
Q 036258          200 GNL-------RFLSLLDLGNNYLTTRSSTTEWSFLSSLT--NCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYA----  266 (331)
Q Consensus       200 ~~~-------~~L~~L~l~~~~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l----  266 (331)
                      ...       ++|++|++++|.+..        ++..+.  .+++|++|++++|.+.+ +|..+..++ +|+.|++    
T Consensus       478 ~~~~~~~~~l~~L~~L~Ls~N~l~~--------lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~-~L~~L~Ls~N~  547 (636)
T 4eco_A          478 KDENENFKNTYLLTSIDLRFNKLTK--------LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSS-TLKGFGIRNQR  547 (636)
T ss_dssp             EETTEECTTGGGCCEEECCSSCCCB--------CCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCS-SCCEEECCSCB
T ss_pred             ccccccccccCCccEEECcCCcCCc--------cChhhhhccCCCcCEEECCCCCCCC-cChhhhcCC-CCCEEECCCCc
Confidence            433       389999999999985        344465  89999999999999996 888888876 9999999    


Q ss_pred             --ccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEeccCCeee
Q 036258          267 --YDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQ  320 (331)
Q Consensus       267 --~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  320 (331)
                        ++|.+.+.+|..+..+++|+.|++++|.+. .+|..+.  ++|+.|++++|++.
T Consensus       548 ~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~  600 (636)
T 4eco_A          548 DAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNI  600 (636)
T ss_dssp             CTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTC
T ss_pred             ccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCc
Confidence              567788899999999999999999999995 8888766  79999999999876

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=2e-29  Score=219.32  Aligned_cols=251  Identities=22%  Similarity=0.290  Sum_probs=145.2

Q ss_pred             CccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCccccccccc
Q 036258           56 SLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVL  135 (331)
Q Consensus        56 ~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  135 (331)
                      +++.++++++.++ .+|..+   .++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..+.++++|++|++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            5677777777776 666644   356777777777776665666777777777777777777666667777777777777


Q ss_pred             CccccccccccCCcchhcCCCCCcEEEcCCCCCCCCc-ccccCCCCCceeeCcCccccc--cCchhccCCCCCCEEEccC
Q 036258          136 GHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIP-NSITNASELTLLELGKNSFSG--LVPNTFGNLRFLSLLDLGN  212 (331)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~n~~~~--~~~~~l~~~~~L~~L~l~~  212 (331)
                      ++|....    ++..++   ++|++|++++|.+..++ ..+..+++|++|++++|.+..  ..+..+..+ +|++|++++
T Consensus       110 ~~n~l~~----l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~  181 (332)
T 2ft3_A          110 SKNHLVE----IPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISE  181 (332)
T ss_dssp             CSSCCCS----CCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCS
T ss_pred             CCCcCCc----cCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcC
Confidence            6655543    233222   56777777777766555 346667777777777776642  444555555 566666666


Q ss_pred             CcccCccCCCc--------------cccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCcc
Q 036258          213 NYLTTRSSTTE--------------WSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQE  278 (331)
Q Consensus       213 ~~l~~~~~~~~--------------~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  278 (331)
                      |.+..++....              ...+..+..+++|++|++++|.+.+..+..+..++ +|+.|++++|.+. .+|..
T Consensus       182 n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~-~lp~~  259 (332)
T 2ft3_A          182 AKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLP-TLRELHLDNNKLS-RVPAG  259 (332)
T ss_dssp             SBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCT-TCCEEECCSSCCC-BCCTT
T ss_pred             CCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCC-CCCEEECCCCcCe-ecChh
Confidence            65554322100              01122344555555555555555544444444444 5555555555555 45555


Q ss_pred             ccCCCCCCEEEccCCCCcccCCcCccC------CCCCCeEeccCCeee
Q 036258          279 IGNLNGLIDLRLQDNDLNGTIPTTVGR------LQQLQGLFLFGNNLQ  320 (331)
Q Consensus       279 l~~l~~L~~L~l~~n~l~~~~~~~l~~------l~~L~~L~l~~n~~~  320 (331)
                      +..+++|+.|++++|.+++..+..|..      .++|+.|++++|++.
T Consensus       260 l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          260 LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP  307 (332)
T ss_dssp             GGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred             hhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence            555555555555555555333333332      234555555555544

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.97  E-value=5.5e-29  Score=225.50  Aligned_cols=248  Identities=22%  Similarity=0.255  Sum_probs=218.5

Q ss_pred             CccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCccccccccc
Q 036258           56 SLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVL  135 (331)
Q Consensus        56 ~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  135 (331)
                      ..+.++.++..++ .+|..+   .+++++|+|++|.+.+..+..|..+++|++|++++|.++...+..|.++++|++|++
T Consensus        55 ~~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L  130 (452)
T 3zyi_A           55 QFSKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL  130 (452)
T ss_dssp             SSCEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCcEEEECCCCcC-ccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence            4578999999998 899766   579999999999999888899999999999999999999888889999999999999


Q ss_pred             CccccccccccCCcchhcCCCCCcEEEcCCCCCCCCc-ccccCCCCCceeeCcC-ccccccCchhccCCCCCCEEEccCC
Q 036258          136 GHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIP-NSITNASELTLLELGK-NSFSGLVPNTFGNLRFLSLLDLGNN  213 (331)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~-n~~~~~~~~~l~~~~~L~~L~l~~~  213 (331)
                      ++|...    .++...+..+++|++|++++|.+..++ ..+..+++|+.|++++ +.+....+..+..+++|++|++++|
T Consensus       131 ~~n~l~----~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n  206 (452)
T 3zyi_A          131 FDNWLT----VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC  206 (452)
T ss_dssp             CSSCCS----BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS
T ss_pred             CCCcCC----ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC
Confidence            877665    445555668999999999999999766 5788999999999998 4555555667899999999999999


Q ss_pred             cccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCC
Q 036258          214 YLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDN  293 (331)
Q Consensus       214 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n  293 (331)
                      .+..++         .+..+++|++|++++|.+.+..|..+..+. +|+.|++++|.+.+..+..+.++++|+.|++++|
T Consensus       207 ~l~~~~---------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  276 (452)
T 3zyi_A          207 NIKDMP---------NLTPLVGLEELEMSGNHFPEIRPGSFHGLS-SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN  276 (452)
T ss_dssp             CCSSCC---------CCTTCTTCCEEECTTSCCSEECGGGGTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             cccccc---------cccccccccEEECcCCcCcccCcccccCcc-CCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC
Confidence            998642         377899999999999999988888888887 9999999999999888999999999999999999


Q ss_pred             CCcccCCcCccCCCCCCeEeccCCeeee
Q 036258          294 DLNGTIPTTVGRLQQLQGLFLFGNNLQG  321 (331)
Q Consensus       294 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~  321 (331)
                      .+++..+..+..+++|+.|++++|++.-
T Consensus       277 ~l~~~~~~~~~~l~~L~~L~L~~Np~~C  304 (452)
T 3zyi_A          277 NLSSLPHDLFTPLRYLVELHLHHNPWNC  304 (452)
T ss_dssp             CCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred             cCCccChHHhccccCCCEEEccCCCcCC
Confidence            9996666778899999999999999763

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.97  E-value=2.5e-29  Score=223.55  Aligned_cols=264  Identities=18%  Similarity=0.193  Sum_probs=208.4

Q ss_pred             CCCCCCCcchhcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccC
Q 036258           41 DPYSVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRL  120 (331)
Q Consensus        41 ~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~  120 (331)
                      +....++...|..+++|++|++++|.+. .++...|..+++|++|++++|.+....+..|..+++|++|++++|.+....
T Consensus        79 n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~  157 (390)
T 3o6n_A           79 LQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE  157 (390)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred             CcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccC
Confidence            3445555567999999999999999998 676666789999999999999998555555789999999999999999777


Q ss_pred             CccccCcccccccccCccccccccccCCcch------------hcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcC
Q 036258          121 PENIGNLSKLRSLVLGHKAHNSLHGHLPSTL------------SVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGK  188 (331)
Q Consensus       121 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~------------~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~  188 (331)
                      +..+..+++|++|++++|............+            ....++|++|++++|.+..++..  ..++|+.|++++
T Consensus       158 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~  235 (390)
T 3o6n_A          158 DDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP--VNVELTILKLQH  235 (390)
T ss_dssp             TTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECC--CCSSCCEEECCS
T ss_pred             hhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeecccc--ccccccEEECCC
Confidence            8889999999999998877665421100000            01223455555555555544332  246899999999


Q ss_pred             ccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEecc
Q 036258          189 NSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYD  268 (331)
Q Consensus       189 n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~  268 (331)
                      |.+.+.  ..+..+++|++|++++|.+...       .+..+..+++|++|++++|.+.+ ++..+..++ +|+.|++++
T Consensus       236 n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~-------~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~-~L~~L~L~~  304 (390)
T 3o6n_A          236 NNLTDT--AWLLNYPGLVEVDLSYNELEKI-------MYHPFVKMQRLERLYISNNRLVA-LNLYGQPIP-TLKVLDLSH  304 (390)
T ss_dssp             SCCCCC--GGGGGCTTCSEEECCSSCCCEE-------ESGGGTTCSSCCEEECCSSCCCE-EECSSSCCT-TCCEEECCS
T ss_pred             CCCccc--HHHcCCCCccEEECCCCcCCCc-------ChhHccccccCCEEECCCCcCcc-cCcccCCCC-CCCEEECCC
Confidence            988754  5688899999999999998863       45668899999999999999984 455555555 999999999


Q ss_pred             CcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEeccCCeeeec
Q 036258          269 CELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGS  322 (331)
Q Consensus       269 ~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~  322 (331)
                      |.+. .+|..+..+++|+.|++++|.++ .++  +..+++|+.|++++|+++..
T Consensus       305 n~l~-~~~~~~~~l~~L~~L~L~~N~i~-~~~--~~~~~~L~~L~l~~N~~~~~  354 (390)
T 3o6n_A          305 NHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCN  354 (390)
T ss_dssp             SCCC-CCGGGHHHHTTCSEEECCSSCCC-CCC--CCTTCCCSEEECCSSCEEHH
T ss_pred             Ccce-ecCccccccCcCCEEECCCCccc-eeC--chhhccCCEEEcCCCCccch
Confidence            9998 67888889999999999999998 444  67889999999999999754

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.97  E-value=1.8e-29  Score=217.18  Aligned_cols=251  Identities=21%  Similarity=0.194  Sum_probs=180.6

Q ss_pred             ccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccc--cCCccccCcccccccc
Q 036258           57 LKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTG--RLPENIGNLSKLRSLV  134 (331)
Q Consensus        57 L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~  134 (331)
                      .+.++++++.++ .+|..+   .++|++|++++|.+....+..|..+++|++|++++|.++.  ..+..+..+++|++|+
T Consensus         9 ~~~l~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~   84 (306)
T 2z66_A            9 GTEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD   84 (306)
T ss_dssp             TTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred             CCEEEcCCCCcc-cCCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEE
Confidence            356777777776 777644   3677888888877764444456777888888888777662  2245566677788888


Q ss_pred             cCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCc--ccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccC
Q 036258          135 LGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIP--NSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGN  212 (331)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~--~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~  212 (331)
                      +++|....+    +.. +..+++|++|++++|.+..++  ..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus        85 Ls~n~i~~l----~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  159 (306)
T 2z66_A           85 LSFNGVITM----SSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG  159 (306)
T ss_dssp             CCSCSEEEE----EEE-EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTT
T ss_pred             CCCCccccC----hhh-cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCC
Confidence            866655432    222 236778888888888777554  3677778888888888887777777777788888888888


Q ss_pred             CcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccC
Q 036258          213 NYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQD  292 (331)
Q Consensus       213 ~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  292 (331)
                      |.+...      ..+..+..+++|++|++++|.+.+..|..+..++ +|+.|++++|.+++..+..+..+++|+.|++++
T Consensus       160 n~l~~~------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  232 (306)
T 2z66_A          160 NSFQEN------FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS-SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL  232 (306)
T ss_dssp             CEEGGG------EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECTTSCCSBCCSGGGTTCTTCCEEECTT
T ss_pred             Cccccc------cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCC-CCCEEECCCCccCccChhhccCcccCCEeECCC
Confidence            877641      2455577788888888888888766677776665 888888888888766666777788888888888


Q ss_pred             CCCcccCCcCccCCC-CCCeEeccCCeeeecC
Q 036258          293 NDLNGTIPTTVGRLQ-QLQGLFLFGNNLQGSI  323 (331)
Q Consensus       293 n~l~~~~~~~l~~l~-~L~~L~l~~n~~~~~~  323 (331)
                      |.+.+..+..+..++ +|++|++++|++++..
T Consensus       233 N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c  264 (306)
T 2z66_A          233 NHIMTSKKQELQHFPSSLAFLNLTQNDFACTC  264 (306)
T ss_dssp             SCCCBCSSSSCCCCCTTCCEEECTTCCEECSG
T ss_pred             CCCcccCHHHHHhhhccCCEEEccCCCeeccc
Confidence            888877777777774 7888888888887543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=1.8e-29  Score=236.29  Aligned_cols=255  Identities=19%  Similarity=0.189  Sum_probs=130.4

Q ss_pred             CcchhcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccC
Q 036258           47 TKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGN  126 (331)
Q Consensus        47 ~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  126 (331)
                      +...|.++++|++|++++|.+. .++...|..+++|++|+|++|.+.+..|..|+.+++|++|++++|.++...+..|..
T Consensus        67 p~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~  145 (597)
T 3oja_B           67 PAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN  145 (597)
T ss_dssp             CTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             CHHHHccCCCCcEEECCCCCCC-CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhcc
Confidence            3334555555666666665555 333333355566666666665555555555555566666666666555333333455


Q ss_pred             cccccccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccC-chh-------
Q 036258          127 LSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLV-PNT-------  198 (331)
Q Consensus       127 l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~-------  198 (331)
                      +++|++|++++|....    ++...+..+++|++|++++|.+..++  +..+++|+.|++++|.+.+.. +..       
T Consensus       146 l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls  219 (597)
T 3oja_B          146 TPKLTTLSMSNNNLER----IEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDAS  219 (597)
T ss_dssp             CTTCCEEECCSSCCCB----CCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSEEECCTTCSEEECC
T ss_pred             CCCCCEEEeeCCcCCC----CChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCccccccCCchhheeecc
Confidence            5566666664443322    22222235555666666655555332  222333333333333222100 000       


Q ss_pred             --------ccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCc
Q 036258          199 --------FGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCE  270 (331)
Q Consensus       199 --------l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~  270 (331)
                              ....++|+.|++++|.+..         +..+..+++|++|++++|.+.+..|..+..++ +|+.|++++|.
T Consensus       220 ~n~l~~~~~~~~~~L~~L~L~~n~l~~---------~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~  289 (597)
T 3oja_B          220 HNSINVVRGPVNVELTILKLQHNNLTD---------TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ-RLERLYISNNR  289 (597)
T ss_dssp             SSCCCEEECSCCSCCCEEECCSSCCCC---------CGGGGGCTTCSEEECCSSCCCEEESGGGTTCS-SCCEEECTTSC
T ss_pred             CCcccccccccCCCCCEEECCCCCCCC---------ChhhccCCCCCEEECCCCccCCCCHHHhcCcc-CCCEEECCCCC
Confidence                    0001223333333333332         23355666666666666666666666666555 66666666666


Q ss_pred             ccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEeccCCeee
Q 036258          271 LKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQ  320 (331)
Q Consensus       271 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  320 (331)
                      +++ +|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.++
T Consensus       290 l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~  337 (597)
T 3oja_B          290 LVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV  337 (597)
T ss_dssp             CCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC
T ss_pred             CCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCC
Confidence            663 4555555666666666666666 45555555666666666666665

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.97  E-value=7.8e-29  Score=223.77  Aligned_cols=247  Identities=23%  Similarity=0.271  Sum_probs=218.0

Q ss_pred             CccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCccccccccc
Q 036258           56 SLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVL  135 (331)
Q Consensus        56 ~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  135 (331)
                      ..+.++.++..++ .+|..+   .++++.|+|++|.+....+..|.++++|++|++++|.++...+..|.++++|++|++
T Consensus        44 ~~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L  119 (440)
T 3zyj_A           44 QFSKVICVRKNLR-EVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL  119 (440)
T ss_dssp             TSCEEECCSCCCS-SCCSCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred             CCCEEEeCCCCcC-cCCCCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence            4578999999998 899866   578999999999999888889999999999999999999777789999999999999


Q ss_pred             CccccccccccCCcchhcCCCCCcEEEcCCCCCCCCc-ccccCCCCCceeeCcCc-cccccCchhccCCCCCCEEEccCC
Q 036258          136 GHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIP-NSITNASELTLLELGKN-SFSGLVPNTFGNLRFLSLLDLGNN  213 (331)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~n-~~~~~~~~~l~~~~~L~~L~l~~~  213 (331)
                      ++|...    .++...+..+++|++|++++|.+..++ ..+..+++|++|++++| .+....+..|..+++|++|++++|
T Consensus       120 ~~n~l~----~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n  195 (440)
T 3zyj_A          120 FDNRLT----TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC  195 (440)
T ss_dssp             CSSCCS----SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS
T ss_pred             CCCcCC----eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC
Confidence            877665    444555668999999999999998766 57889999999999984 555555668999999999999999


Q ss_pred             cccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCC
Q 036258          214 YLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDN  293 (331)
Q Consensus       214 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n  293 (331)
                      .++.++         .+..+++|++|++++|.+.+..+..+..+. +|+.|++++|.+.+..+..+.++++|+.|++++|
T Consensus       196 ~l~~~~---------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  265 (440)
T 3zyj_A          196 NLREIP---------NLTPLIKLDELDLSGNHLSAIRPGSFQGLM-HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN  265 (440)
T ss_dssp             CCSSCC---------CCTTCSSCCEEECTTSCCCEECTTTTTTCT-TCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS
T ss_pred             cCcccc---------ccCCCcccCEEECCCCccCccChhhhccCc-cCCEEECCCCceeEEChhhhcCCCCCCEEECCCC
Confidence            998643         378899999999999999988888888887 9999999999999888999999999999999999


Q ss_pred             CCcccCCcCccCCCCCCeEeccCCeee
Q 036258          294 DLNGTIPTTVGRLQQLQGLFLFGNNLQ  320 (331)
Q Consensus       294 ~l~~~~~~~l~~l~~L~~L~l~~n~~~  320 (331)
                      .+++..+..+..+++|+.|++++|++.
T Consensus       266 ~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          266 NLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             CCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             CCCccChhHhccccCCCEEEcCCCCcc
Confidence            999766677889999999999999986

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=1.4e-28  Score=213.75  Aligned_cols=246  Identities=20%  Similarity=0.301  Sum_probs=204.1

Q ss_pred             CCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccc
Q 036258           55 SSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLV  134 (331)
Q Consensus        55 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  134 (331)
                      +.+++|++++|.++ .++...|..+++|++|++++|.+.+..|..|..+++|++|++++|.++ .+|..+.  ++|++|+
T Consensus        52 ~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~  127 (330)
T 1xku_A           52 PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELR  127 (330)
T ss_dssp             TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEE
T ss_pred             CCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEE
Confidence            68999999999998 677766689999999999999998887889999999999999999988 5665554  7899999


Q ss_pred             cCccccccccccCCcchhcCCCCCcEEEcCCCCCC---CCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEcc
Q 036258          135 LGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLR---TIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLG  211 (331)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~---~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~  211 (331)
                      +++|...    .++...+..+++|++|++++|.+.   ..+..+..+++|++|++++|.+... |..+.  ++|++|+++
T Consensus       128 l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~~--~~L~~L~l~  200 (330)
T 1xku_A          128 VHENEIT----KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI-PQGLP--PSLTELHLD  200 (330)
T ss_dssp             CCSSCCC----BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC-CSSCC--TTCSEEECT
T ss_pred             CCCCccc----ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC-Ccccc--ccCCEEECC
Confidence            9776655    344555668999999999999886   3457788899999999999998754 33332  789999999


Q ss_pred             CCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEcc
Q 036258          212 NNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQ  291 (331)
Q Consensus       212 ~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  291 (331)
                      +|.+...       .+..+..+++|++|++++|.+.+..+..+..++ +|++|++++|.++ .+|.++..+++|+.|+++
T Consensus       201 ~n~l~~~-------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~  271 (330)
T 1xku_A          201 GNKITKV-------DAASLKGLNNLAKLGLSFNSISAVDNGSLANTP-HLRELHLNNNKLV-KVPGGLADHKYIQVVYLH  271 (330)
T ss_dssp             TSCCCEE-------CTGGGTTCTTCCEEECCSSCCCEECTTTGGGST-TCCEEECCSSCCS-SCCTTTTTCSSCCEEECC
T ss_pred             CCcCCcc-------CHHHhcCCCCCCEEECCCCcCceeChhhccCCC-CCCEEECCCCcCc-cCChhhccCCCcCEEECC
Confidence            9988863       345688899999999999999877777777776 9999999999998 788889999999999999


Q ss_pred             CCCCcccCCcCccC------CCCCCeEeccCCeee
Q 036258          292 DNDLNGTIPTTVGR------LQQLQGLFLFGNNLQ  320 (331)
Q Consensus       292 ~n~l~~~~~~~l~~------l~~L~~L~l~~n~~~  320 (331)
                      +|.+++..+..|..      .++++.+++++|++.
T Consensus       272 ~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~  306 (330)
T 1xku_A          272 NNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  306 (330)
T ss_dssp             SSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             CCcCCccChhhcCCcccccccccccceEeecCccc
Confidence            99999655556643      367899999999975

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.97  E-value=6.4e-29  Score=241.21  Aligned_cols=276  Identities=21%  Similarity=0.178  Sum_probs=176.2

Q ss_pred             CCCCCCCcchhcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccC
Q 036258           41 DPYSVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRL  120 (331)
Q Consensus        41 ~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~  120 (331)
                      +....+....|.++++|++|++++|...+.++...|..+++|++|+|++|.+.+..|..|+++++|++|++++|.+++..
T Consensus        34 N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~  113 (844)
T 3j0a_A           34 NYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAV  113 (844)
T ss_dssp             CCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCC
T ss_pred             CcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCccc
Confidence            44455555568888889999998886555776666688888999999888888777888888888999999888887655


Q ss_pred             Ccc--ccCcccccccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCC-CcccccCC--CCCceeeCcCccccccC
Q 036258          121 PEN--IGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRT-IPNSITNA--SELTLLELGKNSFSGLV  195 (331)
Q Consensus       121 ~~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-~~~~~~~l--~~L~~L~l~~n~~~~~~  195 (331)
                      +..  +.++++|++|++++|....   ..+...+..+++|++|++++|.+.. .+..+..+  ++|+.|++++|.+.+..
T Consensus       114 ~~~~~~~~L~~L~~L~Ls~N~l~~---~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~  190 (844)
T 3j0a_A          114 LKDGYFRNLKALTRLDLSKNQIRS---LYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRV  190 (844)
T ss_dssp             STTCCCSSCSSCCEEEEESCCCCC---CCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCC
T ss_pred             ccCccccccCCCCEEECCCCcccc---cccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCcccccc
Confidence            554  7888888888886655543   2233344578888888888888763 33445444  56666666666555444


Q ss_pred             chhccCCCC------CCEEEccCCcccCccCCC-----------------------------------------------
Q 036258          196 PNTFGNLRF------LSLLDLGNNYLTTRSSTT-----------------------------------------------  222 (331)
Q Consensus       196 ~~~l~~~~~------L~~L~l~~~~l~~~~~~~-----------------------------------------------  222 (331)
                      +..+..+.+      |++|++++|.+.......                                               
T Consensus       191 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~  270 (844)
T 3j0a_A          191 SVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRH  270 (844)
T ss_dssp             CCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCE
T ss_pred             ccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccE
Confidence            433333332      555555555332110000                                               


Q ss_pred             --------ccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCC
Q 036258          223 --------EWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDND  294 (331)
Q Consensus       223 --------~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~  294 (331)
                              ....+..+..+++|++|++++|.+.+..+..+..+. +|++|++++|.+.+..|..+.++++|+.|++++|.
T Consensus       271 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~  349 (844)
T 3j0a_A          271 LDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLD-NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH  349 (844)
T ss_dssp             EECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCS-SCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCC
T ss_pred             EECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCC-CCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCC
Confidence                    001223355566666666666666655555555554 66666666666665556666666666666666666


Q ss_pred             CcccCCcCccCCCCCCeEeccCCeee
Q 036258          295 LNGTIPTTVGRLQQLQGLFLFGNNLQ  320 (331)
Q Consensus       295 l~~~~~~~l~~l~~L~~L~l~~n~~~  320 (331)
                      +.+..+..|..+++|+.|++++|.++
T Consensus       350 i~~~~~~~~~~l~~L~~L~Ls~N~l~  375 (844)
T 3j0a_A          350 IAIIQDQTFKFLEKLQTLDLRDNALT  375 (844)
T ss_dssp             CCCCCSSCSCSCCCCCEEEEETCCSC
T ss_pred             CCccChhhhcCCCCCCEEECCCCCCC
Confidence            66444455666666666666666665

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.97  E-value=1.3e-29  Score=222.46  Aligned_cols=257  Identities=22%  Similarity=0.267  Sum_probs=177.1

Q ss_pred             CCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccc
Q 036258           55 SSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLV  134 (331)
Q Consensus        55 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  134 (331)
                      ++|++|++++|.++ .++...|..+++|++|++++|.+.+..+..|..+++|++|++++|.++...+..+.++++|++|+
T Consensus        52 ~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  130 (353)
T 2z80_A           52 EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN  130 (353)
T ss_dssp             TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred             ccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence            46777777777776 56655557777777777777777766666677777777777777777744444467777777777


Q ss_pred             cCccccccccccCCc-chhcCCCCCcEEEcCCC-CCCCC-cccccCCCCCceeeCcCccccccCchhccCCCCCCEEEcc
Q 036258          135 LGHKAHNSLHGHLPS-TLSVSLPNLKWLALGMN-KLRTI-PNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLG  211 (331)
Q Consensus       135 l~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~-~l~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~  211 (331)
                      +++|....    ++. ..+..+++|++|++++| .+..+ +..+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus       131 L~~n~l~~----l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  206 (353)
T 2z80_A          131 LLGNPYKT----LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILH  206 (353)
T ss_dssp             CTTCCCSS----SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred             CCCCCCcc----cCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCC
Confidence            76655543    222 33446777777777776 35544 3566777777777777777776667777777777777777


Q ss_pred             CCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhh--ccccccEEEeccCcccc----cCCccccCCCCC
Q 036258          212 NNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGN--FSDSLQQFYAYDCELKG----SIPQEIGNLNGL  285 (331)
Q Consensus       212 ~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~----~~~~~l~~l~~L  285 (331)
                      +|.+...+       ...+..+++|++|++++|.+.+..+..+..  ....++.++++++.+.+    .+|.++..+++|
T Consensus       207 ~n~l~~~~-------~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L  279 (353)
T 2z80_A          207 MKQHILLL-------EIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGL  279 (353)
T ss_dssp             CSCSTTHH-------HHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTC
T ss_pred             CCccccch-------hhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCC
Confidence            77765421       112344677777777777776544433321  12356666666666654    356778899999


Q ss_pred             CEEEccCCCCcccCCcC-ccCCCCCCeEeccCCeeeecCC
Q 036258          286 IDLRLQDNDLNGTIPTT-VGRLQQLQGLFLFGNNLQGSIP  324 (331)
Q Consensus       286 ~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~~n~~~~~~p  324 (331)
                      +.|++++|.++ .+|.. +..+++|++|++++|++++.+|
T Consensus       280 ~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          280 LELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             CEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            99999999999 66665 5899999999999999997765

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.96  E-value=7.3e-29  Score=231.19  Aligned_cols=88  Identities=26%  Similarity=0.386  Sum_probs=44.3

Q ss_pred             hcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccc-cCCccccCccc
Q 036258           51 FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTG-RLPENIGNLSK  129 (331)
Q Consensus        51 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~  129 (331)
                      |.++++|++|++++|.+. .++...|..+++|++|++++|.+.+..+..++.+++|++|++++|.+.. .+|..+.++++
T Consensus        72 ~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~  150 (570)
T 2z63_A           72 YQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN  150 (570)
T ss_dssp             TTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTT
T ss_pred             ccCchhCCEEeCcCCcCC-ccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCC
Confidence            444444444444444444 3333333444444444444444443333335555566666666665553 24666666666


Q ss_pred             ccccccCccc
Q 036258          130 LRSLVLGHKA  139 (331)
Q Consensus       130 L~~L~l~~~~  139 (331)
                      |++|++++|.
T Consensus       151 L~~L~l~~n~  160 (570)
T 2z63_A          151 LEHLDLSSNK  160 (570)
T ss_dssp             CCEEECTTSC
T ss_pred             CCEEeCcCCc
Confidence            6666666543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=1.3e-28  Score=214.12  Aligned_cols=250  Identities=20%  Similarity=0.243  Sum_probs=160.1

Q ss_pred             hcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccc
Q 036258           51 FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKL  130 (331)
Q Consensus        51 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L  130 (331)
                      |.++++|++|++++|.++ .++...|..+++|++|++++|.+. .+|..+.  ++|++|++++|.++...+..+..+++|
T Consensus        74 ~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L  149 (332)
T 2ft3_A           74 FKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNM  149 (332)
T ss_dssp             TTTCTTCCEEECCSSCCC-EECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSC
T ss_pred             hhCCCCCcEEECCCCccC-ccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccC
Confidence            444444444444444444 222222244444444444444443 2222222  444444444444443333344555555


Q ss_pred             cccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEc
Q 036258          131 RSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDL  210 (331)
Q Consensus       131 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l  210 (331)
                      ++|++++|.....  ......+..+ +|++|++++|.+..+|..+.  ++|++|++++|.+.+..+..+..+++|++|++
T Consensus       150 ~~L~l~~n~l~~~--~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L  224 (332)
T 2ft3_A          150 NCIEMGGNPLENS--GFEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGL  224 (332)
T ss_dssp             CEEECCSCCCBGG--GSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBC
T ss_pred             CEEECCCCccccC--CCCcccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence            5555544433221  1111222233 55555555555555554332  68888888888888777788899999999999


Q ss_pred             cCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccC------CCC
Q 036258          211 GNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGN------LNG  284 (331)
Q Consensus       211 ~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~------l~~  284 (331)
                      ++|.+...+       +..+..+++|++|++++|.+. .+|..+..++ +|+.|++++|.+++..+..+..      .+.
T Consensus       225 ~~N~l~~~~-------~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~-~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~  295 (332)
T 2ft3_A          225 GHNQIRMIE-------NGSLSFLPTLRELHLDNNKLS-RVPAGLPDLK-LLQVVYLHTNNITKVGVNDFCPVGFGVKRAY  295 (332)
T ss_dssp             CSSCCCCCC-------TTGGGGCTTCCEEECCSSCCC-BCCTTGGGCT-TCCEEECCSSCCCBCCTTSSSCSSCCSSSCC
T ss_pred             CCCcCCcCC-------hhHhhCCCCCCEEECCCCcCe-ecChhhhcCc-cCCEEECCCCCCCccChhHcccccccccccc
Confidence            999988743       335888999999999999998 7888888776 9999999999999766666654      367


Q ss_pred             CCEEEccCCCCc--ccCCcCccCCCCCCeEeccCCe
Q 036258          285 LIDLRLQDNDLN--GTIPTTVGRLQQLQGLFLFGNN  318 (331)
Q Consensus       285 L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~l~~n~  318 (331)
                      |+.|++.+|++.  +..|.++..+++|+.+++++|.
T Consensus       296 l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          296 YNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             BSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             ccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            899999999987  5667788999999999999885

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.96  E-value=1.7e-28  Score=235.73  Aligned_cols=268  Identities=21%  Similarity=0.283  Sum_probs=179.8

Q ss_pred             chhcCCCCccEEEcCCCc-Ccc-CCChhhh------cCCCCCcEEEccCCcccccCCc--cCcCCCCCCEEEccCccccc
Q 036258           49 NCFYNISSLKMIRLSSNS-LSG-SLPNDLC------NRLPSLEQLVLRSNGFFGQIPL--SLSKCTQLQHLWLEHNKFTG  118 (331)
Q Consensus        49 ~~~~~~~~L~~L~l~~~~-i~~-~~~~~~~------~~~~~L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~l~~n~~~~  118 (331)
                      ..|.++++|++|++++|. +++ .+|..+.      ..+++|++|++++|.+. .+|.  .++.+++|++|++++|.++ 
T Consensus       509 ~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-  586 (876)
T 4ecn_A          509 DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-  586 (876)
T ss_dssp             GGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-
T ss_pred             HHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-
Confidence            357778888888888886 765 5665441      23447777777777776 6666  6777777777777777776 


Q ss_pred             cCCccccCcccccccccCccccccccccCCcchhcCCCC-CcEEEcCCCCCCCCcccccCCC------------------
Q 036258          119 RLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPN-LKWLALGMNKLRTIPNSITNAS------------------  179 (331)
Q Consensus       119 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~-L~~L~l~~~~l~~~~~~~~~l~------------------  179 (331)
                      .+| .+..+++|+.|++++|...    .++..+. .+++ |++|++++|.+..+|..+..+.                  
T Consensus       587 ~lp-~~~~L~~L~~L~Ls~N~l~----~lp~~l~-~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~i  660 (876)
T 4ecn_A          587 HLE-AFGTNVKLTDLKLDYNQIE----EIPEDFC-AFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEG  660 (876)
T ss_dssp             BCC-CCCTTSEESEEECCSSCCS----CCCTTSC-EECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTS
T ss_pred             cch-hhcCCCcceEEECcCCccc----cchHHHh-hccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCcc
Confidence            566 6677777777777655544    3333332 4555 6666666666665554443332                  


Q ss_pred             -------------CCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccc
Q 036258          180 -------------ELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQL  246 (331)
Q Consensus       180 -------------~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~  246 (331)
                                   +|+.|++++|.+....+..+..+++|++|++++|.+..++..........+.++++|++|+|++|.+
T Consensus       661 p~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L  740 (876)
T 4ecn_A          661 RNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKL  740 (876)
T ss_dssp             SSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCC
T ss_pred             ccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCC
Confidence                         4445555555554333333446677788888877777554331100111123445888888888888


Q ss_pred             cccCCchhh--hccccccEEEeccCcccccCCccccCCCCCCEEEccC------CCCcccCCcCccCCCCCCeEeccCCe
Q 036258          247 SGILPPLIG--NFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQD------NDLNGTIPTTVGRLQQLQGLFLFGNN  318 (331)
Q Consensus       247 ~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~------n~l~~~~~~~l~~l~~L~~L~l~~n~  318 (331)
                      . .+|..+.  .++ +|+.|+|++|.+.+ +|..+..+++|+.|++++      |.+.+.+|..+..+++|+.|++++|.
T Consensus       741 ~-~lp~~l~~~~l~-~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~  817 (876)
T 4ecn_A          741 T-SLSDDFRATTLP-YLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND  817 (876)
T ss_dssp             C-CCCGGGSTTTCT-TCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred             c-cchHHhhhccCC-CcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC
Confidence            7 6777765  555 88899998888885 788888888899998866      67777888888888889999999998


Q ss_pred             eeecCCcccc
Q 036258          319 LQGSIPSDLC  328 (331)
Q Consensus       319 ~~~~~p~~~~  328 (331)
                      + +.+|..+.
T Consensus       818 L-~~Ip~~l~  826 (876)
T 4ecn_A          818 I-RKVDEKLT  826 (876)
T ss_dssp             C-CBCCSCCC
T ss_pred             C-CccCHhhc
Confidence            8 58887654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.96  E-value=1.5e-28  Score=229.15  Aligned_cols=125  Identities=25%  Similarity=0.373  Sum_probs=100.2

Q ss_pred             CCCCCCCcchhcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccC
Q 036258           41 DPYSVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRL  120 (331)
Q Consensus        41 ~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~  120 (331)
                      +....+....|.++++|++|++++|.+. .++...|..+++|++|++++|.+.+..+..|+++++|++|++++|.++...
T Consensus        38 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~  116 (570)
T 2z63_A           38 NPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE  116 (570)
T ss_dssp             CCCCEECTTTTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCST
T ss_pred             CccCccChhHhhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCC
Confidence            4455556667999999999999999998 677777799999999999999998888889999999999999999998655


Q ss_pred             CccccCcccccccccCccccccccccCCcchhcCCCCCcEEEcCCCCCC
Q 036258          121 PENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLR  169 (331)
Q Consensus       121 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~  169 (331)
                      +..+.++++|++|++++|....+  .++..+ ..+++|++|++++|.+.
T Consensus       117 ~~~~~~l~~L~~L~L~~n~l~~~--~lp~~~-~~l~~L~~L~l~~n~l~  162 (570)
T 2z63_A          117 NFPIGHLKTLKELNVAHNLIQSF--KLPEYF-SNLTNLEHLDLSSNKIQ  162 (570)
T ss_dssp             TCSCTTCTTCCEEECCSSCCCCC--CCCGGG-GGCTTCCEEECTTSCCC
T ss_pred             CccccccccccEEecCCCcccee--cChhhh-cccCCCCEEeCcCCccc
Confidence            55799999999999977665432  233333 36777777777776654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.96  E-value=3.2e-29  Score=240.70  Aligned_cols=164  Identities=20%  Similarity=0.276  Sum_probs=127.4

Q ss_pred             hhcCCCCccEEEcCCCcCcc-----------------CCChhh-hcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEc
Q 036258           50 CFYNISSLKMIRLSSNSLSG-----------------SLPNDL-CNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWL  111 (331)
Q Consensus        50 ~~~~~~~L~~L~l~~~~i~~-----------------~~~~~~-~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l  111 (331)
                      .|.++++|++|++++|.+++                 .+|..+ |..+++|++|+|++|.+.+.+|..|+++++|++|++
T Consensus       443 ~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~L  522 (876)
T 4ecn_A          443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNI  522 (876)
T ss_dssp             GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEEC
T ss_pred             HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEEC
Confidence            58889999999999999986                 288776 348999999999999988889999999999999999


Q ss_pred             cCcc-ccc-cCCccccCcc-------cccccccCccccccccccCCc-chhcCCCCCcEEEcCCCCCCCCcccccCCCCC
Q 036258          112 EHNK-FTG-RLPENIGNLS-------KLRSLVLGHKAHNSLHGHLPS-TLSVSLPNLKWLALGMNKLRTIPNSITNASEL  181 (331)
Q Consensus       112 ~~n~-~~~-~~~~~~~~l~-------~L~~L~l~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L  181 (331)
                      ++|. +++ .+|..+..++       +|++|++++|...    .+|. ..+..+++|++|++++|.+..+| .+..+++|
T Consensus       523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~----~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L  597 (876)
T 4ecn_A          523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE----EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKL  597 (876)
T ss_dssp             TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC----BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEE
T ss_pred             cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC----ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcc
Confidence            9997 876 6776665554       8888888666554    4454 23337788888888888877777 77777888


Q ss_pred             ceeeCcCccccccCchhccCCCC-CCEEEccCCcccCcc
Q 036258          182 TLLELGKNSFSGLVPNTFGNLRF-LSLLDLGNNYLTTRS  219 (331)
Q Consensus       182 ~~L~l~~n~~~~~~~~~l~~~~~-L~~L~l~~~~l~~~~  219 (331)
                      +.|++++|.+. ..|..+..+++ |++|++++|.+..++
T Consensus       598 ~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp  635 (876)
T 4ecn_A          598 TDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIP  635 (876)
T ss_dssp             SEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCC
T ss_pred             eEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCc
Confidence            88888888777 55666777777 777777777766543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.96  E-value=1.2e-28  Score=229.31  Aligned_cols=95  Identities=29%  Similarity=0.292  Sum_probs=62.9

Q ss_pred             CCCCCCcchhcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccc-cC
Q 036258           42 PYSVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTG-RL  120 (331)
Q Consensus        42 ~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~-~~  120 (331)
                      ....++...|.++++|++|++++|.++ .++...|..+++|++|++++|.+. .+|..  .+++|++|++++|.+++ ..
T Consensus        63 ~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~  138 (562)
T 3a79_B           63 SISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPV  138 (562)
T ss_dssp             CCCCCCGGGTTTCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCC
T ss_pred             CccccChhhhccCCCccEEECCCCCCC-cCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCc
Confidence            344444456777777777777777777 454444577777777777777776 34443  67777777777777764 23


Q ss_pred             CccccCcccccccccCcccc
Q 036258          121 PENIGNLSKLRSLVLGHKAH  140 (331)
Q Consensus       121 ~~~~~~l~~L~~L~l~~~~~  140 (331)
                      |..+.++++|++|++++|..
T Consensus       139 p~~~~~l~~L~~L~L~~n~l  158 (562)
T 3a79_B          139 CKEFGNLTKLTFLGLSAAKF  158 (562)
T ss_dssp             CGGGGGCTTCCEEEEECSBC
T ss_pred             hHhhcccCcccEEecCCCcc
Confidence            46677777777777766543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.96  E-value=7.5e-29  Score=228.67  Aligned_cols=91  Identities=27%  Similarity=0.343  Sum_probs=50.8

Q ss_pred             CCCCcchhcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccc-cCCc
Q 036258           44 SVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTG-RLPE  122 (331)
Q Consensus        44 ~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~  122 (331)
                      ..++...|.++++|++|++++|.++ .+++..|..+++|++|++++|.+. .+|..  .+++|++|++++|.+++ ..|.
T Consensus        34 ~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~  109 (520)
T 2z7x_B           34 SELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICK  109 (520)
T ss_dssp             CCCCHHHHTTCTTCCEEECCSSCCC-EEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCG
T ss_pred             cccChhhccccccccEEecCCCccC-CcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchh
Confidence            3344445666666666666666665 333333356666666666666665 23333  55666666666666553 2445


Q ss_pred             cccCcccccccccCcc
Q 036258          123 NIGNLSKLRSLVLGHK  138 (331)
Q Consensus       123 ~~~~l~~L~~L~l~~~  138 (331)
                      .+.++++|++|++++|
T Consensus       110 ~~~~l~~L~~L~L~~n  125 (520)
T 2z7x_B          110 EFGNMSQLKFLGLSTT  125 (520)
T ss_dssp             GGGGCTTCCEEEEEES
T ss_pred             hhccCCcceEEEecCc
Confidence            5555555555555444

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.96  E-value=8.7e-29  Score=231.63  Aligned_cols=264  Identities=18%  Similarity=0.196  Sum_probs=209.9

Q ss_pred             CCCCCCCcchhcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccC
Q 036258           41 DPYSVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRL  120 (331)
Q Consensus        41 ~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~  120 (331)
                      +....++...|..+++|++|++++|.+. .++...|+.+++|++|++++|.+.+..+..|+.+++|++|++++|.+++..
T Consensus        85 n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~  163 (597)
T 3oja_B           85 LQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE  163 (597)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred             CCCCCCChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCC
Confidence            4455556668999999999999999998 677777799999999999999998666666799999999999999999888


Q ss_pred             CccccCcccccccccCccccccccccCCcch------------hcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcC
Q 036258          121 PENIGNLSKLRSLVLGHKAHNSLHGHLPSTL------------SVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGK  188 (331)
Q Consensus       121 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~------------~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~  188 (331)
                      |..+..+++|++|++++|............+            ....++|++|++++|.+..++..+  .++|+.|++++
T Consensus       164 ~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~  241 (597)
T 3oja_B          164 DDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV--NVELTILKLQH  241 (597)
T ss_dssp             TTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCS
T ss_pred             hhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCccccccccc--CCCCCEEECCC
Confidence            8889999999999998877664421100000            012234455555555554433322  35788999999


Q ss_pred             ccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEecc
Q 036258          189 NSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYD  268 (331)
Q Consensus       189 n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~  268 (331)
                      |.+.+.  ..+..+++|++|++++|.+..       ..+..+..+++|++|++++|.+.+ +|..+..++ +|+.|++++
T Consensus       242 n~l~~~--~~l~~l~~L~~L~Ls~N~l~~-------~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~-~L~~L~Ls~  310 (597)
T 3oja_B          242 NNLTDT--AWLLNYPGLVEVDLSYNELEK-------IMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIP-TLKVLDLSH  310 (597)
T ss_dssp             SCCCCC--GGGGGCTTCSEEECCSSCCCE-------EESGGGTTCSSCCEEECTTSCCCE-EECSSSCCT-TCCEEECCS
T ss_pred             CCCCCC--hhhccCCCCCEEECCCCccCC-------CCHHHhcCccCCCEEECCCCCCCC-CCcccccCC-CCcEEECCC
Confidence            988753  678889999999999999987       346678999999999999999985 455555555 999999999


Q ss_pred             CcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEeccCCeeeec
Q 036258          269 CELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGS  322 (331)
Q Consensus       269 ~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~  322 (331)
                      |.+. .+|..+..+++|+.|++++|.+.+ ++  +..+++|+.|++++|++++.
T Consensus       311 N~l~-~i~~~~~~l~~L~~L~L~~N~l~~-~~--~~~~~~L~~L~l~~N~~~~~  360 (597)
T 3oja_B          311 NHLL-HVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHTLKNLTLSHNDWDCN  360 (597)
T ss_dssp             SCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC--CCTTCCCSEEECCSSCEEHH
T ss_pred             CCCC-ccCcccccCCCCCEEECCCCCCCC-cC--hhhcCCCCEEEeeCCCCCCh
Confidence            9998 688889999999999999999984 43  67789999999999999864

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.96  E-value=7.2e-28  Score=229.06  Aligned_cols=239  Identities=24%  Similarity=0.301  Sum_probs=138.4

Q ss_pred             CCCCCCCcchhcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccC
Q 036258           41 DPYSVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRL  120 (331)
Q Consensus        41 ~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~  120 (331)
                      +....++...|.++++|++|++++|.+. .++...|..+++|++|++++|.+.+..+..|+++++|++|++++|.+.+..
T Consensus        35 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~  113 (680)
T 1ziw_A           35 NQLRRLPAANFTRYSQLTSLDVGFNTIS-KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIK  113 (680)
T ss_dssp             SCCCCCCGGGGGGGTTCSEEECCSSCCC-CCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC
T ss_pred             CCCCCcCHHHHhCCCcCcEEECCCCccC-ccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccC
Confidence            3444555556777777888888777776 444444567777888887777776554456777777777777777777555


Q ss_pred             CccccCcccccccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCc-ccc--cCCCCCceeeCcCccccccCch
Q 036258          121 PENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIP-NSI--TNASELTLLELGKNSFSGLVPN  197 (331)
Q Consensus       121 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~--~~l~~L~~L~l~~n~~~~~~~~  197 (331)
                      +..|.++++|++|++++|.....    +...+..+++|++|++++|.++.++ ..+  ..+++|++|++++|.+.+..+.
T Consensus       114 ~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~  189 (680)
T 1ziw_A          114 NNPFVKQKNLITLDLSHNGLSST----KLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPG  189 (680)
T ss_dssp             SCTTTTCTTCCEEECCSSCCSCC----CCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTT
T ss_pred             hhHccccCCCCEEECCCCccccc----CchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChh
Confidence            56777777777777765544322    2222336677777777777766544 222  2346677777777766655554


Q ss_pred             hccCCC---------------------------CCCEEEccCCcccCccCCCccccccccccCCC--CcEEEeecccccc
Q 036258          198 TFGNLR---------------------------FLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIY--LKVLGLHSNQLSG  248 (331)
Q Consensus       198 ~l~~~~---------------------------~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~--L~~L~l~~n~~~~  248 (331)
                      .+..++                           +|++|++++|.+...       .+..+..++.  |++|++++|.+.+
T Consensus       190 ~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~-------~~~~~~~l~~~~L~~L~Ls~n~l~~  262 (680)
T 1ziw_A          190 CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTT-------SNTTFLGLKWTNLTMLDLSYNNLNV  262 (680)
T ss_dssp             GGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEE-------CTTTTGGGGGSCCCEEECTTSCCCE
T ss_pred             hhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCccccc-------ChhHhhccCcCCCCEEECCCCCcCc
Confidence            444332                           334444444443331       1222333332  5555555555554


Q ss_pred             cCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccC
Q 036258          249 ILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQD  292 (331)
Q Consensus       249 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  292 (331)
                      ..+..+..++ +|+.|++++|.+.+..|..+.++++|+.|++++
T Consensus       263 ~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  305 (680)
T 1ziw_A          263 VGNDSFAWLP-QLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR  305 (680)
T ss_dssp             ECTTTTTTCT-TCCEEECCSCCBSEECTTTTTTCTTCCEEECTT
T ss_pred             cCcccccCcc-cccEeeCCCCccCccChhhhcCCCCccEEeccc
Confidence            4444444444 555555555555544444444444444444443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.96  E-value=1.8e-28  Score=226.16  Aligned_cols=128  Identities=21%  Similarity=0.227  Sum_probs=99.2

Q ss_pred             CCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccc
Q 036258           55 SSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLV  134 (331)
Q Consensus        55 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  134 (331)
                      ++|++|++++|.+. .++...|..+++|++|++++|.+.+..|..|+.+++|++|++++|.++ .+|..  .+++|++|+
T Consensus        21 ~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~   96 (520)
T 2z7x_B           21 QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLD   96 (520)
T ss_dssp             TTCSEEECCSSCCC-CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEE
T ss_pred             ccccEEECCCCccc-ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEe
Confidence            78999999999998 677666689999999999999999888889999999999999999998 56665  899999999


Q ss_pred             cCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCC--ceeeCcCccc
Q 036258          135 LGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASEL--TLLELGKNSF  191 (331)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L--~~L~l~~n~~  191 (331)
                      +++|....+  .++..+ ..+++|++|++++|.+..  ..+..+++|  ++|++++|.+
T Consensus        97 L~~N~l~~~--~~p~~~-~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l  150 (520)
T 2z7x_B           97 LSFNAFDAL--PICKEF-GNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGET  150 (520)
T ss_dssp             CCSSCCSSC--CCCGGG-GGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTT
T ss_pred             ccCCccccc--cchhhh-ccCCcceEEEecCcccch--hhccccccceeeEEEeecccc
Confidence            977765432  233333 478888888888887653  233444444  5555555544

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.96  E-value=1.7e-28  Score=208.95  Aligned_cols=262  Identities=21%  Similarity=0.265  Sum_probs=199.3

Q ss_pred             hhcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCccc
Q 036258           50 CFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSK  129 (331)
Q Consensus        50 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~  129 (331)
                      |...-..-++++.++++++ .+|..+   .++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++
T Consensus         6 C~C~~~~~~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~   81 (285)
T 1ozn_A            6 CVCYNEPKVTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL   81 (285)
T ss_dssp             CEEECSSSCEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             ceECCCCCeEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccC
Confidence            3333344578999999888 888654   679999999999998777778899999999999999998777888889999


Q ss_pred             ccccccCccc-cccccccCCcchhcCCCCCcEEEcCCCCCCCC-cccccCCCCCceeeCcCccccccCchhccCCCCCCE
Q 036258          130 LRSLVLGHKA-HNSLHGHLPSTLSVSLPNLKWLALGMNKLRTI-PNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSL  207 (331)
Q Consensus       130 L~~L~l~~~~-~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~  207 (331)
                      |++|++++|. ..    .++...+..+++|++|++++|.+..+ +..+..+++|++|++++|.+....+..+..+++|++
T Consensus        82 L~~L~l~~n~~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  157 (285)
T 1ozn_A           82 LEQLDLSDNAQLR----SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH  157 (285)
T ss_dssp             CCEEECCSCTTCC----CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCEEeCCCCCCcc----ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccE
Confidence            9999996654 33    33334445788899999999888865 466788889999999999888777777888888999


Q ss_pred             EEccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCE
Q 036258          208 LDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLID  287 (331)
Q Consensus       208 L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  287 (331)
                      |++++|.++.++.       ..+..+++|++|++++|.+.+..|..+..++ +|+.|++++|.+++..+..+..+++|+.
T Consensus       158 L~l~~n~l~~~~~-------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~  229 (285)
T 1ozn_A          158 LFLHGNRISSVPE-------RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG-RLMTLYLFANNLSALPTEALAPLRALQY  229 (285)
T ss_dssp             EECCSSCCCEECT-------TTTTTCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCSCCCHHHHTTCTTCCE
T ss_pred             EECCCCcccccCH-------HHhcCccccCEEECCCCcccccCHhHccCcc-cccEeeCCCCcCCcCCHHHcccCcccCE
Confidence            9999988876432       2477788899999999888877787777776 8888888888888655566888888888


Q ss_pred             EEccCCCCcccCCcCccCCCCCCeEeccCCeeeecCCcccc
Q 036258          288 LRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDLC  328 (331)
Q Consensus       288 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~  328 (331)
                      |++++|++...-+ ...-...++.+....+.+....|+.+.
T Consensus       230 L~l~~N~~~c~~~-~~~~~~~l~~~~~~~~~~~c~~p~~l~  269 (285)
T 1ozn_A          230 LRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEVPCSLPQRLA  269 (285)
T ss_dssp             EECCSSCEECSGG-GHHHHHHHHHCCSEECCCBEEESGGGT
T ss_pred             EeccCCCccCCCC-cHHHHHHHHhcccccCccccCCchHhC
Confidence            9988888873221 111112345555666666666666543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.96  E-value=6.2e-28  Score=229.49  Aligned_cols=269  Identities=20%  Similarity=0.200  Sum_probs=153.7

Q ss_pred             hhcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCc----------------------------ccccCCccCc
Q 036258           50 CFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNG----------------------------FFGQIPLSLS  101 (331)
Q Consensus        50 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~----------------------------i~~~~~~~~~  101 (331)
                      .|..+++|++|++++|.+. .++...|..+++|++|++++|.                            +.+..|..|.
T Consensus       324 ~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~  402 (680)
T 1ziw_A          324 SFQWLKCLEHLNMEDNDIP-GIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFS  402 (680)
T ss_dssp             TTTTCTTCCEEECCSCCBC-CCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTT
T ss_pred             hcccCCCCCEEECCCCccC-CCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhh
Confidence            4556666666666666666 3444444556666666555543                            3333334444


Q ss_pred             CCCCCCEEEccCccccccCC-ccccCcccccccccCccccccccccCCcchhcCCCCCcEEEcCCCCCC---CCcccccC
Q 036258          102 KCTQLQHLWLEHNKFTGRLP-ENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLR---TIPNSITN  177 (331)
Q Consensus       102 ~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~---~~~~~~~~  177 (331)
                      .+++|++|++++|.+.+.++ ..+.++++|++|++++|...    .+....+..+++|++|++.+|.+.   .+|..+..
T Consensus       403 ~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~  478 (680)
T 1ziw_A          403 WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL----QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP  478 (680)
T ss_dssp             TCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEE----ECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTT
T ss_pred             CCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcc----eeChhhhhcCcccccchhccccccccccCCccccc
Confidence            44445555555544443232 34444445555555433322    122223334556666666655543   34556666


Q ss_pred             CCCCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCC-ccccccccccCCCCcEEEeecccccccCCchhhh
Q 036258          178 ASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTT-EWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGN  256 (331)
Q Consensus       178 l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~-~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~  256 (331)
                      +++|+.|++++|.+.+..+..+..+++|++|++++|.+..+.... .......+..+++|++|++++|.+....+..+..
T Consensus       479 l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~  558 (680)
T 1ziw_A          479 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKD  558 (680)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             CCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHccc
Confidence            777777777777776666666677777777777777666543220 0001123566777777777777776333334555


Q ss_pred             ccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCcc-CCCCCCeEeccCCeeeecCC
Q 036258          257 FSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVG-RLQQLQGLFLFGNNLQGSIP  324 (331)
Q Consensus       257 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n~~~~~~p  324 (331)
                      +. +|+.|++++|++++..+..+.++++|+.|++++|.+++..+..+. .+++|+.+++++|++...++
T Consensus       559 l~-~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~  626 (680)
T 1ziw_A          559 LF-ELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE  626 (680)
T ss_dssp             CT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred             cc-CcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence            54 777777777777754455566777777777777777754444454 56777777777777766554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.96  E-value=2.7e-28  Score=236.87  Aligned_cols=271  Identities=17%  Similarity=0.114  Sum_probs=201.0

Q ss_pred             CCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccc-cCCccCcCCCCCCEEEccCccccccCCccccCcccccc
Q 036258           54 ISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFG-QIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRS  132 (331)
Q Consensus        54 ~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  132 (331)
                      .+++++|++++|.++ .++...|..+++|++|++++|...+ ..|.+|.++++|++|++++|.+.+..|..|.++++|++
T Consensus        23 p~~l~~LdLs~N~i~-~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  101 (844)
T 3j0a_A           23 LNTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE  101 (844)
T ss_dssp             CTTCCEEEEESCCCC-EECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred             CCCcCEEECCCCcCC-ccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence            378999999999998 5554556899999999999996544 44788999999999999999999888999999999999


Q ss_pred             cccCccccccccccCC-cchhcCCCCCcEEEcCCCCCCCC--cccccCCCCCceeeCcCccccccCchhccCC--CCCCE
Q 036258          133 LVLGHKAHNSLHGHLP-STLSVSLPNLKWLALGMNKLRTI--PNSITNASELTLLELGKNSFSGLVPNTFGNL--RFLSL  207 (331)
Q Consensus       133 L~l~~~~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~~--~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~--~~L~~  207 (331)
                      |++++|...   +.++ ...+..+++|++|++++|.+..+  +..+.++++|++|++++|.+.+..+..+..+  ++|+.
T Consensus       102 L~Ls~n~l~---~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~  178 (844)
T 3j0a_A          102 LRLYFCGLS---DAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF  178 (844)
T ss_dssp             EECTTCCCS---SCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCC
T ss_pred             eeCcCCCCC---cccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccce
Confidence            999766554   3222 23355899999999999999854  3578999999999999999988888888776  88999


Q ss_pred             EEccCCcccCccCCCc-----------------------cccccccc---------------------------------
Q 036258          208 LDLGNNYLTTRSSTTE-----------------------WSFLSSLT---------------------------------  231 (331)
Q Consensus       208 L~l~~~~l~~~~~~~~-----------------------~~~~~~~~---------------------------------  231 (331)
                      |+++.|.+.......-                       ...+..+.                                 
T Consensus       179 L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~  258 (844)
T 3j0a_A          179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN  258 (844)
T ss_dssp             CEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGT
T ss_pred             EECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChh
Confidence            9999998776321100                       00000000                                 


Q ss_pred             ---c--CCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCC
Q 036258          232 ---N--CIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRL  306 (331)
Q Consensus       232 ---~--~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l  306 (331)
                         .  .++|++|++++|.+.+..+..+..++ +|+.|++++|.+.+..+..+.++++|+.|++++|.+++..+..+..+
T Consensus       259 ~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  337 (844)
T 3j0a_A          259 TFAGLARSSVRHLDLSHGFVFSLNSRVFETLK-DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGL  337 (844)
T ss_dssp             TTTTTTTSCCCEEECTTCCCCEECSCCSSSCC-CCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSC
T ss_pred             hhhccccCCccEEECCCCcccccChhhhhcCC-CCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCC
Confidence               0  14566666666666655555555555 77777777777776666677777777777777777776666677777


Q ss_pred             CCCCeEeccCCeeeecCCccccC
Q 036258          307 QQLQGLFLFGNNLQGSIPSDLCH  329 (331)
Q Consensus       307 ~~L~~L~l~~n~~~~~~p~~~~~  329 (331)
                      ++|+.|++++|.+++..|..+..
T Consensus       338 ~~L~~L~L~~N~i~~~~~~~~~~  360 (844)
T 3j0a_A          338 PKVAYIDLQKNHIAIIQDQTFKF  360 (844)
T ss_dssp             TTCCEEECCSCCCCCCCSSCSCS
T ss_pred             CCCCEEECCCCCCCccChhhhcC
Confidence            77777777777776433444443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.96  E-value=2e-27  Score=207.92  Aligned_cols=248  Identities=26%  Similarity=0.389  Sum_probs=160.3

Q ss_pred             hhcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCccc
Q 036258           50 CFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSK  129 (331)
Q Consensus        50 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~  129 (331)
                      .+..+++|++|++++|.++ .++.  |..+++|++|++++|.+.. + ..+..+++|++|++++|.+... +. +..+++
T Consensus        61 ~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~  133 (347)
T 4fmz_A           61 GIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRELYLNEDNISDI-SP-LANLTK  133 (347)
T ss_dssp             TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEECTTSCCCCC-GG-GTTCTT
T ss_pred             hhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEEECcCCcccCc-hh-hccCCc
Confidence            3788899999999999887 6665  5789999999999988874 3 3588889999999999888743 33 677778


Q ss_pred             ccccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCc-------------
Q 036258          130 LRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVP-------------  196 (331)
Q Consensus       130 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~-------------  196 (331)
                      |++|++++|.....   ++ . +..+++|++|++.+|.+..++. +..+++|++|++++|.+.+..+             
T Consensus       134 L~~L~l~~n~~~~~---~~-~-~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~  207 (347)
T 4fmz_A          134 MYSLNLGANHNLSD---LS-P-LSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAY  207 (347)
T ss_dssp             CCEEECTTCTTCCC---CG-G-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECC
T ss_pred             eeEEECCCCCCccc---cc-c-hhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcccccccccCCCccceeecc
Confidence            88888765532211   11 1 2244555555555554443332 4444444444444444432211             


Q ss_pred             -------hhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccC
Q 036258          197 -------NTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDC  269 (331)
Q Consensus       197 -------~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~  269 (331)
                             ..+..+++|++|++++|.+...        +. +..+++|++|++++|.+.+.  ..+..++ +|+.|++++|
T Consensus       208 ~n~l~~~~~~~~~~~L~~L~l~~n~l~~~--------~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~-~L~~L~l~~n  275 (347)
T 4fmz_A          208 VNQITDITPVANMTRLNSLKIGNNKITDL--------SP-LANLSQLTWLEIGTNQISDI--NAVKDLT-KLKMLNVGSN  275 (347)
T ss_dssp             SSCCCCCGGGGGCTTCCEEECCSSCCCCC--------GG-GTTCTTCCEEECCSSCCCCC--GGGTTCT-TCCEEECCSS
T ss_pred             cCCCCCCchhhcCCcCCEEEccCCccCCC--------cc-hhcCCCCCEEECCCCccCCC--hhHhcCC-CcCEEEccCC
Confidence                   1145556666666666665542        11 56677777777777777642  3344444 7777777777


Q ss_pred             cccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEeccCCeeeecCC
Q 036258          270 ELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIP  324 (331)
Q Consensus       270 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p  324 (331)
                      .+.+ + ..+..+++|+.|++++|.+.+..+..+..+++|++|++++|++++..|
T Consensus       276 ~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  328 (347)
T 4fmz_A          276 QISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP  328 (347)
T ss_dssp             CCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred             ccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence            7764 3 356777778888888887776666677777888888888888775444

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.96  E-value=7.3e-28  Score=224.01  Aligned_cols=128  Identities=23%  Similarity=0.233  Sum_probs=95.2

Q ss_pred             CCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccc
Q 036258           55 SSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLV  134 (331)
Q Consensus        55 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  134 (331)
                      +++++|++++|.+. .++...|..+++|++|++++|.+.+..|..|..+++|++|++++|.++ .+|..  .+++|++|+
T Consensus        52 ~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~  127 (562)
T 3a79_B           52 PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLD  127 (562)
T ss_dssp             TTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEE
T ss_pred             CCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEE
Confidence            78999999999988 676666688999999999999998887888999999999999999888 56655  788999999


Q ss_pred             cCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCC--ceeeCcCccc
Q 036258          135 LGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASEL--TLLELGKNSF  191 (331)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L--~~L~l~~n~~  191 (331)
                      +++|....+.  ++. .+..+++|++|++++|.+...  .+..+++|  ++|++++|.+
T Consensus       128 Ls~N~l~~l~--~p~-~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l  181 (562)
T 3a79_B          128 LSFNDFDVLP--VCK-EFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSY  181 (562)
T ss_dssp             CCSSCCSBCC--CCG-GGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSC
T ss_pred             CCCCCccccC--chH-hhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccc
Confidence            9776665331  222 334788888888888877632  23333344  6666655554

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.96  E-value=4.2e-28  Score=210.35  Aligned_cols=213  Identities=27%  Similarity=0.324  Sum_probs=165.9

Q ss_pred             CCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccccCccccccccccCCcchhcCCCCC
Q 036258           79 LPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNL  158 (331)
Q Consensus        79 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L  158 (331)
                      .++++.|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|++                       
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~L-----------------------  134 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTL-----------------------  134 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEE-----------------------
T ss_pred             ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEEC-----------------------
Confidence            467777777777776 55666667777777777777766 56665555555555555                       


Q ss_pred             cEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchh---------ccCCCCCCEEEccCCcccCccCCCccccccc
Q 036258          159 KWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNT---------FGNLRFLSLLDLGNNYLTTRSSTTEWSFLSS  229 (331)
Q Consensus       159 ~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~---------l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~  229 (331)
                           ++|.+..+|..+..+++|++|++++|.+.+..|..         +.++++|++|++++|.++.        ++..
T Consensus       135 -----s~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~--------lp~~  201 (328)
T 4fcg_A          135 -----ARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS--------LPAS  201 (328)
T ss_dssp             -----ESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCC--------CCGG
T ss_pred             -----CCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCc--------chHh
Confidence                 44444444444555555555555554444444433         4568999999999999884        4566


Q ss_pred             cccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCC
Q 036258          230 LTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQL  309 (331)
Q Consensus       230 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  309 (331)
                      +..+++|++|++++|.+. .+|..+..++ +|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|
T Consensus       202 l~~l~~L~~L~L~~N~l~-~l~~~l~~l~-~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L  279 (328)
T 4fcg_A          202 IANLQNLKSLKIRNSPLS-ALGPAIHHLP-KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQL  279 (328)
T ss_dssp             GGGCTTCCEEEEESSCCC-CCCGGGGGCT-TCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTC
T ss_pred             hcCCCCCCEEEccCCCCC-cCchhhccCC-CCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCC
Confidence            889999999999999998 5677777776 99999999999999999999999999999999999999999999999999


Q ss_pred             CeEeccCCeeeecCCccccCCC
Q 036258          310 QGLFLFGNNLQGSIPSDLCHWG  331 (331)
Q Consensus       310 ~~L~l~~n~~~~~~p~~~~~~~  331 (331)
                      ++|++++|++.+.+|+.+.+++
T Consensus       280 ~~L~L~~n~~~~~iP~~l~~L~  301 (328)
T 4fcg_A          280 EKLDLRGCVNLSRLPSLIAQLP  301 (328)
T ss_dssp             CEEECTTCTTCCCCCGGGGGSC
T ss_pred             CEEeCCCCCchhhccHHHhhcc
Confidence            9999999999999999988764

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=1.3e-28  Score=211.76  Aligned_cols=262  Identities=26%  Similarity=0.301  Sum_probs=215.0

Q ss_pred             CCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCccccc--CCccCcCCCCCCEEEccCccccccCCccccCcccccc
Q 036258           55 SSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQ--IPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRS  132 (331)
Q Consensus        55 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~--~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  132 (331)
                      +++++|++++|.++ .+|..+|..+++|++|++++|.+...  .+..+..+++|++|++++|.+. .++..+..+++|++
T Consensus        28 ~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~  105 (306)
T 2z66_A           28 SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEH  105 (306)
T ss_dssp             TTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCE
T ss_pred             CCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCE
Confidence            68999999999998 89988889999999999999988632  3566778999999999999998 57777999999999


Q ss_pred             cccCccccccccccCCcchhcCCCCCcEEEcCCCCCCC-CcccccCCCCCceeeCcCccccc-cCchhccCCCCCCEEEc
Q 036258          133 LVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRT-IPNSITNASELTLLELGKNSFSG-LVPNTFGNLRFLSLLDL  210 (331)
Q Consensus       133 L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-~~~~~~~l~~L~~L~l~~n~~~~-~~~~~l~~~~~L~~L~l  210 (331)
                      |++++|......   ....+..+++|++|++++|.+.. .+..+..+++|++|++++|.+.+ ..+..+..+++|++|++
T Consensus       106 L~l~~n~l~~~~---~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L  182 (306)
T 2z66_A          106 LDFQHSNLKQMS---EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL  182 (306)
T ss_dssp             EECTTSEEESST---TTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred             EECCCCcccccc---cchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEEC
Confidence            999776665432   12344588999999999999874 45778889999999999999986 56788999999999999


Q ss_pred             cCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCC-CCCEEE
Q 036258          211 GNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLN-GLIDLR  289 (331)
Q Consensus       211 ~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~  289 (331)
                      ++|.+...       .+..+..+++|++|++++|.+.+..+..+..++ +|+.|++++|.+.+..|..+..++ +|+.|+
T Consensus       183 s~n~l~~~-------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~  254 (306)
T 2z66_A          183 SQCQLEQL-------SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN-SLQVLDYSLNHIMTSKKQELQHFPSSLAFLN  254 (306)
T ss_dssp             TTSCCCEE-------CTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCT-TCCEEECTTSCCCBCSSSSCCCCCTTCCEEE
T ss_pred             CCCCcCCc-------CHHHhcCCCCCCEEECCCCccCccChhhccCcc-cCCEeECCCCCCcccCHHHHHhhhccCCEEE
Confidence            99999864       345688899999999999999877666777666 999999999999988899999985 999999


Q ss_pred             ccCCCCcccCC--cCccCCCCCCeEeccCCeeeecCCccccC
Q 036258          290 LQDNDLNGTIP--TTVGRLQQLQGLFLFGNNLQGSIPSDLCH  329 (331)
Q Consensus       290 l~~n~l~~~~~--~~l~~l~~L~~L~l~~n~~~~~~p~~~~~  329 (331)
                      +++|++.+.-.  +...-+...+.+.+..+.+....|+.+..
T Consensus       255 L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g  296 (306)
T 2z66_A          255 LTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQG  296 (306)
T ss_dssp             CTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTT
T ss_pred             ccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCC
Confidence            99999985321  11122344556667777777777777654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.96  E-value=2.8e-27  Score=207.04  Aligned_cols=245  Identities=22%  Similarity=0.372  Sum_probs=176.9

Q ss_pred             hcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccc
Q 036258           51 FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKL  130 (331)
Q Consensus        51 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L  130 (331)
                      |..+++|++|++++|.+. .++.  |..+++|++|++++|.+.+. +. +..+++|++|++++|..... +..+..+++|
T Consensus        84 ~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L  157 (347)
T 4fmz_A           84 LSNLVKLTNLYIGTNKIT-DISA--LQNLTNLRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSD-LSPLSNMTGL  157 (347)
T ss_dssp             GTTCTTCCEEECCSSCCC-CCGG--GTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCC-CGGGTTCTTC
T ss_pred             hhcCCcCCEEEccCCccc-CchH--HcCCCcCCEEECcCCcccCc-hh-hccCCceeEEECCCCCCccc-ccchhhCCCC
Confidence            778888888888888877 5542  46788888888888877643 22 66677777777776643322 2234555555


Q ss_pred             cccccCccccccccc------------------cCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCcccc
Q 036258          131 RSLVLGHKAHNSLHG------------------HLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFS  192 (331)
Q Consensus       131 ~~L~l~~~~~~~~~~------------------~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~  192 (331)
                      ++|+++++.......                  .++.  +..+++|+++++.+|.+..++. +..+++|++|++++|.+.
T Consensus       158 ~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~  234 (347)
T 4fmz_A          158 NYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKIT  234 (347)
T ss_dssp             CEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCC
T ss_pred             cEEEecCCCcCCchhhccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccC
Confidence            555554433322211                  0111  2245566666666666554443 677889999999999887


Q ss_pred             ccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCccc
Q 036258          193 GLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELK  272 (331)
Q Consensus       193 ~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~  272 (331)
                      ...+  +..+++|++|++++|.+..+         ..+..+++|++|++++|.+.+.  ..+..++ +|+.|++++|.+.
T Consensus       235 ~~~~--~~~l~~L~~L~l~~n~l~~~---------~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~-~L~~L~L~~n~l~  300 (347)
T 4fmz_A          235 DLSP--LANLSQLTWLEIGTNQISDI---------NAVKDLTKLKMLNVGSNQISDI--SVLNNLS-QLNSLFLNNNQLG  300 (347)
T ss_dssp             CCGG--GTTCTTCCEEECCSSCCCCC---------GGGTTCTTCCEEECCSSCCCCC--GGGGGCT-TCSEEECCSSCCC
T ss_pred             CCcc--hhcCCCCCEEECCCCccCCC---------hhHhcCCCcCEEEccCCccCCC--hhhcCCC-CCCEEECcCCcCC
Confidence            6543  88899999999999988863         3478899999999999999854  3455555 9999999999999


Q ss_pred             ccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEeccCCeee
Q 036258          273 GSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQ  320 (331)
Q Consensus       273 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  320 (331)
                      +..+..+..+++|+.|++++|++++..|  +..+++|++|++++|+++
T Consensus       301 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          301 NEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             GGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             CcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            8888899999999999999999995544  788999999999999986

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.96  E-value=4.7e-27  Score=221.53  Aligned_cols=124  Identities=25%  Similarity=0.364  Sum_probs=80.4

Q ss_pred             CCCCCCCcchhcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccC
Q 036258           41 DPYSVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRL  120 (331)
Q Consensus        41 ~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~  120 (331)
                      |....++...|.++++|++|++++|.|+ .+++..|..+++|++|+|++|++.+..+..|.++++|++|++++|.+++..
T Consensus        62 N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~  140 (635)
T 4g8a_A           62 NPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE  140 (635)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCST
T ss_pred             CCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCC
Confidence            4455556667788888888888888877 676666677888888888887777655566777777777777777777555


Q ss_pred             CccccCcccccccccCccccccccccCCcchhcCCCCCcEEEcCCCCC
Q 036258          121 PENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKL  168 (331)
Q Consensus       121 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l  168 (331)
                      +..|.++++|++|++++|....+  ..+. .+..+++|++|++++|.+
T Consensus       141 ~~~~~~L~~L~~L~Ls~N~l~~~--~~~~-~~~~l~~L~~L~L~~N~l  185 (635)
T 4g8a_A          141 NFPIGHLKTLKELNVAHNLIQSF--KLPE-YFSNLTNLEHLDLSSNKI  185 (635)
T ss_dssp             TCCCTTCTTCCEEECCSSCCCCC--CCCG-GGGGCTTCCEEECCSSCC
T ss_pred             hhhhhcCcccCeeccccCccccC--CCch-hhccchhhhhhcccCccc
Confidence            55667777777777755443322  1112 122455555555555443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.96  E-value=5.3e-27  Score=221.17  Aligned_cols=133  Identities=25%  Similarity=0.216  Sum_probs=116.4

Q ss_pred             CCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccc
Q 036258           55 SSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLV  134 (331)
Q Consensus        55 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  134 (331)
                      +++++|+|++|.|+ .+++..|..+++|++|+|++|.|.++.+.+|.++++|++|+|++|+++...+..|.++++|++|+
T Consensus        52 ~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~  130 (635)
T 4g8a_A           52 FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  130 (635)
T ss_dssp             TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred             cCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence            37999999999998 88887789999999999999999988888899999999999999999976667899999999999


Q ss_pred             cCccccccccccCCcchhcCCCCCcEEEcCCCCCCC--CcccccCCCCCceeeCcCcccc
Q 036258          135 LGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRT--IPNSITNASELTLLELGKNSFS  192 (331)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~--~~~~~~~l~~L~~L~l~~n~~~  192 (331)
                      +++|....    ++...+..+++|++|++++|.+..  .|..+..+++|++|++++|.+.
T Consensus       131 Ls~N~l~~----l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~  186 (635)
T 4g8a_A          131 AVETNLAS----LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  186 (635)
T ss_dssp             CTTSCCCC----STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             CCCCcCCC----CChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence            98776653    445555689999999999999874  5678888999999999888664

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.95  E-value=5.3e-29  Score=215.21  Aligned_cols=250  Identities=20%  Similarity=0.172  Sum_probs=199.3

Q ss_pred             hcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccc
Q 036258           51 FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKL  130 (331)
Q Consensus        51 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L  130 (331)
                      +..+++|++|++++|.+. .++...|..+++|++|++++|.+.+..+  +..+++|++|++++|.+++. +    ..++|
T Consensus        30 ~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l-~----~~~~L  101 (317)
T 3o53_A           30 RQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSI  101 (317)
T ss_dssp             HTTGGGCSEEECTTSCCC-CCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE-E----ECTTC
T ss_pred             hccCCCCCEEECcCCccC-cCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc-c----CCCCc
Confidence            556678999999999998 6666666889999999999999876544  88899999999999988732 2    34899


Q ss_pred             cccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCc-ccccCCCCCceeeCcCccccccCchhc-cCCCCCCEE
Q 036258          131 RSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIP-NSITNASELTLLELGKNSFSGLVPNTF-GNLRFLSLL  208 (331)
Q Consensus       131 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~l-~~~~~L~~L  208 (331)
                      ++|++++|.......       ..+++|++|++++|.+..++ ..+..+++|++|++++|.+.+..+..+ ..+++|++|
T Consensus       102 ~~L~l~~n~l~~~~~-------~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L  174 (317)
T 3o53_A          102 ETLHAANNNISRVSC-------SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL  174 (317)
T ss_dssp             CEEECCSSCCSEEEE-------CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEE
T ss_pred             CEEECCCCccCCcCc-------cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEE
Confidence            999997776654432       14678999999999998664 577888999999999999987666665 468899999


Q ss_pred             EccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEE
Q 036258          209 DLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDL  288 (331)
Q Consensus       209 ~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L  288 (331)
                      ++++|.++.++.         ...+++|++|++++|.+.+ +|..+..++ +|+.|++++|.++ .+|..+..+++|+.|
T Consensus       175 ~L~~N~l~~~~~---------~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~-~L~~L~L~~N~l~-~l~~~~~~l~~L~~L  242 (317)
T 3o53_A          175 NLQYNFIYDVKG---------QVVFAKLKTLDLSSNKLAF-MGPEFQSAA-GVTWISLRNNKLV-LIEKALRFSQNLEHF  242 (317)
T ss_dssp             ECTTSCCCEEEC---------CCCCTTCCEEECCSSCCCE-ECGGGGGGT-TCSEEECTTSCCC-EECTTCCCCTTCCEE
T ss_pred             ECCCCcCccccc---------ccccccCCEEECCCCcCCc-chhhhcccC-cccEEECcCCccc-chhhHhhcCCCCCEE
Confidence            999998886422         3348889999999999984 555566665 9999999999998 578888899999999


Q ss_pred             EccCCCCc-ccCCcCccCCCCCCeEeccCCe-eeecCCccc
Q 036258          289 RLQDNDLN-GTIPTTVGRLQQLQGLFLFGNN-LQGSIPSDL  327 (331)
Q Consensus       289 ~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~-~~~~~p~~~  327 (331)
                      ++++|++. +.++..+..+++|+.+++.++. ++|..|...
T Consensus       243 ~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~  283 (317)
T 3o53_A          243 DLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEEC  283 (317)
T ss_dssp             ECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCCC
T ss_pred             EccCCCccCcCHHHHHhccccceEEECCCchhccCCchhcc
Confidence            99999998 6677778888899999998544 666666544

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.95  E-value=3.9e-28  Score=225.33  Aligned_cols=170  Identities=19%  Similarity=0.210  Sum_probs=99.3

Q ss_pred             CCCCcchhcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccc-cCCc
Q 036258           44 SVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTG-RLPE  122 (331)
Q Consensus        44 ~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~  122 (331)
                      ..+....|.++++|++|++++|.+. .++...|..+++|++|++++|.+.+..+..|+.+++|++|++++|.+++ ..|.
T Consensus        39 ~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  117 (549)
T 2z81_A           39 TYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS  117 (549)
T ss_dssp             CEECSSTTSSCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSC
T ss_pred             CccChhhhhcCCcccEEECCCCCcC-ccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhh
Confidence            3333445677777777777777776 4444444667777777777777765555557777777777777777664 2345


Q ss_pred             cccCcccccccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCC-CcccccCCCCCceeeCcCccccccCchhccC
Q 036258          123 NIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRT-IPNSITNASELTLLELGKNSFSGLVPNTFGN  201 (331)
Q Consensus       123 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~  201 (331)
                      .+.++++|++|++++|.   ..+.++...+..+++|++|++++|.+.. .|..+..+++|++|++++|.+.......+..
T Consensus       118 ~~~~l~~L~~L~L~~n~---~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~  194 (549)
T 2z81_A          118 LFPNLTNLQTLRIGNVE---TFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADI  194 (549)
T ss_dssp             SCTTCTTCCEEEEEESS---SCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHS
T ss_pred             hhhccCCccEEECCCCc---cccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhh
Confidence            66777777777775443   1223333334466777777777776663 4455555555555555444433221122233


Q ss_pred             CCCCCEEEccCCcccC
Q 036258          202 LRFLSLLDLGNNYLTT  217 (331)
Q Consensus       202 ~~~L~~L~l~~~~l~~  217 (331)
                      +++|++|++++|.+..
T Consensus       195 l~~L~~L~L~~n~l~~  210 (549)
T 2z81_A          195 LSSVRYLELRDTNLAR  210 (549)
T ss_dssp             TTTBSEEEEESCBCTT
T ss_pred             cccccEEEccCCcccc
Confidence            4555555555555443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.95  E-value=1.3e-28  Score=212.72  Aligned_cols=249  Identities=21%  Similarity=0.214  Sum_probs=208.0

Q ss_pred             CCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccc
Q 036258           55 SSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLV  134 (331)
Q Consensus        55 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  134 (331)
                      ..++..+++.+.+. ..+..++..+++|++|++++|.+.+..|..|..+++|++|++++|.+++..+  +..+++|++|+
T Consensus        10 ~~l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~   86 (317)
T 3o53_A           10 NRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLD   86 (317)
T ss_dssp             TEEEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEE
T ss_pred             CceeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEE
Confidence            45777888888886 6677777889999999999999997777889999999999999999985444  88999999999


Q ss_pred             cCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCc
Q 036258          135 LGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNY  214 (331)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~  214 (331)
                      +++|....+.         ..++|++|++++|.+..++.  ..+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus        87 Ls~n~l~~l~---------~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~  155 (317)
T 3o53_A           87 LNNNYVQELL---------VGPSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE  155 (317)
T ss_dssp             CCSSEEEEEE---------ECTTCCEEECCSSCCSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSC
T ss_pred             CcCCcccccc---------CCCCcCEEECCCCccCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCC
Confidence            9877665432         34899999999999986653  236889999999999998878888899999999999999


Q ss_pred             ccCccCCCcccccccc-ccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCC
Q 036258          215 LTTRSSTTEWSFLSSL-TNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDN  293 (331)
Q Consensus       215 l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n  293 (331)
                      +...       .+..+ ..+++|++|++++|.+.+.....  .+ ++|+.|++++|.+++ +|..+..+++|+.|++++|
T Consensus       156 l~~~-------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~l-~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N  224 (317)
T 3o53_A          156 IDTV-------NFAELAASSDTLEHLNLQYNFIYDVKGQV--VF-AKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNN  224 (317)
T ss_dssp             CCEE-------EGGGGGGGTTTCCEEECTTSCCCEEECCC--CC-TTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTS
T ss_pred             CCcc-------cHHHHhhccCcCCEEECCCCcCccccccc--cc-ccCCEEECCCCcCCc-chhhhcccCcccEEECcCC
Confidence            9874       23334 47899999999999998553222  23 499999999999984 5556999999999999999


Q ss_pred             CCcccCCcCccCCCCCCeEeccCCeee-ecCCccccC
Q 036258          294 DLNGTIPTTVGRLQQLQGLFLFGNNLQ-GSIPSDLCH  329 (331)
Q Consensus       294 ~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~p~~~~~  329 (331)
                      .++ .+|..+..+++|+.|++++|+++ +.+|..+.+
T Consensus       225 ~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~  260 (317)
T 3o53_A          225 KLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK  260 (317)
T ss_dssp             CCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHT
T ss_pred             ccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhc
Confidence            999 78888999999999999999998 666665544

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.95  E-value=7.9e-27  Score=216.51  Aligned_cols=96  Identities=25%  Similarity=0.343  Sum_probs=66.7

Q ss_pred             CCCCCcchhcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccc-cCCccCcCCCCCCEEEccCccccccCC
Q 036258           43 YSVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFG-QIPLSLSKCTQLQHLWLEHNKFTGRLP  121 (331)
Q Consensus        43 ~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~  121 (331)
                      ...++...|.++++|++|++++|.+. .++...|+.+++|++|++++|.+.+ ..|..++.+++|++|++++|.+.+.++
T Consensus        62 i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~  140 (549)
T 2z81_A           62 INTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR  140 (549)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCC-SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC
T ss_pred             cCccChhhccccccCCEEECCCCccC-ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccC
Confidence            33444456888888999999988887 6666656888888888888888764 345667778888888888776322333


Q ss_pred             -ccccCcccccccccCccc
Q 036258          122 -ENIGNLSKLRSLVLGHKA  139 (331)
Q Consensus       122 -~~~~~l~~L~~L~l~~~~  139 (331)
                       ..+.++++|++|++++|.
T Consensus       141 ~~~~~~l~~L~~L~L~~n~  159 (549)
T 2z81_A          141 RIDFAGLTSLNELEIKALS  159 (549)
T ss_dssp             TTTTTTCCEEEEEEEEETT
T ss_pred             HhhhhcccccCeeeccCCc
Confidence             455566666666665443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.95  E-value=2.8e-26  Score=208.52  Aligned_cols=245  Identities=27%  Similarity=0.381  Sum_probs=150.7

Q ss_pred             hcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccc
Q 036258           51 FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKL  130 (331)
Q Consensus        51 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L  130 (331)
                      +..+++|++|++++|.+. .++.  +..+++|++|++++|.+.+..+  +..+++|++|++++|.++.. +. +..+++|
T Consensus        64 ~~~l~~L~~L~Ls~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L  136 (466)
T 1o6v_A           64 VEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI-DP-LKNLTNL  136 (466)
T ss_dssp             GGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GG-GTTCTTC
T ss_pred             hhhhcCCCEEECCCCccC-Cchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCC-hH-HcCCCCC
Confidence            778899999999999887 5665  5788999999999988875443  88889999999998888743 32 7788888


Q ss_pred             cccccCcccccccccc---------------CCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccC
Q 036258          131 RSLVLGHKAHNSLHGH---------------LPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLV  195 (331)
Q Consensus       131 ~~L~l~~~~~~~~~~~---------------~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~  195 (331)
                      ++|++++|....+..-               .....+..+++|++|++++|.+..++ .+..+++|++|++++|.+.+..
T Consensus       137 ~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~  215 (466)
T 1o6v_A          137 NRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDIT  215 (466)
T ss_dssp             SEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCG
T ss_pred             CEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCcccccc
Confidence            8888877665443210               00011336677778888777776654 3666777777777777776543


Q ss_pred             chhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhcc-----------------
Q 036258          196 PNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFS-----------------  258 (331)
Q Consensus       196 ~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~-----------------  258 (331)
                      +  +..+++|++|++++|.+..+         ..+..+++|++|++++|.+.+..+  +..++                 
T Consensus       216 ~--~~~l~~L~~L~l~~n~l~~~---------~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~  282 (466)
T 1o6v_A          216 P--LGILTNLDELSLNGNQLKDI---------GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP  282 (466)
T ss_dssp             G--GGGCTTCCEEECCSSCCCCC---------GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG
T ss_pred             c--ccccCCCCEEECCCCCcccc---------hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc
Confidence            3  45566666666666665542         123444555555555555443222  22222                 


Q ss_pred             ----ccccEEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEeccCCeee
Q 036258          259 ----DSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQ  320 (331)
Q Consensus       259 ----~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  320 (331)
                          ++|+.|++++|.+.+..+  +..+++|+.|++++|.+.+..|  +..+++|++|++++|.++
T Consensus       283 ~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~  344 (466)
T 1o6v_A          283 LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVS  344 (466)
T ss_dssp             GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCC
T ss_pred             ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccC
Confidence                145555555554442211  4455555555555555553322  445555555555555555

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=1.4e-26  Score=209.69  Aligned_cols=227  Identities=25%  Similarity=0.239  Sum_probs=197.8

Q ss_pred             CCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccc
Q 036258           55 SSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLV  134 (331)
Q Consensus        55 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  134 (331)
                      +++++|++++|.+. .++...|..+++|++|++++|.+.+..+..|.++++|++|++++|.++...+..|..+++|++|+
T Consensus        75 ~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  153 (452)
T 3zyi_A           75 SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW  153 (452)
T ss_dssp             TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred             CCccEEECcCCcCc-eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence            57999999999998 66666668999999999999999988889999999999999999999977677799999999999


Q ss_pred             cCccccccccccCCcchhcCCCCCcEEEcCC-CCCCCCc-ccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccC
Q 036258          135 LGHKAHNSLHGHLPSTLSVSLPNLKWLALGM-NKLRTIP-NSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGN  212 (331)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~l~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~  212 (331)
                      +++|.+.    .++...+..+++|++|++++ +.+..++ ..+..+++|+.|++++|.+.+. + .+..+++|++|++++
T Consensus       154 L~~N~l~----~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~  227 (452)
T 3zyi_A          154 LRNNPIE----SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSG  227 (452)
T ss_dssp             CCSCCCC----EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTT
T ss_pred             CCCCCcc----eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcC
Confidence            9877765    34455566899999999988 4566555 5688999999999999999865 3 478899999999999


Q ss_pred             CcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccC
Q 036258          213 NYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQD  292 (331)
Q Consensus       213 ~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  292 (331)
                      |.+..+       .+..+..+++|++|++++|.+.+..+..+..++ +|+.|+|++|.+++..+..+..+++|+.|++++
T Consensus       228 N~l~~~-------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  299 (452)
T 3zyi_A          228 NHFPEI-------RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLA-SLVELNLAHNNLSSLPHDLFTPLRYLVELHLHH  299 (452)
T ss_dssp             SCCSEE-------CGGGGTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCSCCCTTSSTTCTTCCEEECCS
T ss_pred             CcCccc-------CcccccCccCCCEEEeCCCcCceECHHHhcCCC-CCCEEECCCCcCCccChHHhccccCCCEEEccC
Confidence            999873       456689999999999999999988888888777 999999999999977777889999999999999


Q ss_pred             CCCc
Q 036258          293 NDLN  296 (331)
Q Consensus       293 n~l~  296 (331)
                      |++.
T Consensus       300 Np~~  303 (452)
T 3zyi_A          300 NPWN  303 (452)
T ss_dssp             SCEE
T ss_pred             CCcC
Confidence            9865

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=2.6e-26  Score=195.38  Aligned_cols=227  Identities=22%  Similarity=0.253  Sum_probs=194.3

Q ss_pred             cEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccccCccccccccccCCcchhcCCCCCcEEE
Q 036258           83 EQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLA  162 (331)
Q Consensus        83 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~  162 (331)
                      +.++++++.+. .+|..+  .++|++|++++|.++...+..+..+++|++|++++|....+    ....+..+++|++|+
T Consensus        14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~   86 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI----DAAAFTGLALLEQLD   86 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE----CTTTTTTCTTCCEEE
T ss_pred             eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCcccee----CHhhcCCccCCCEEe
Confidence            67888888887 556544  57999999999999977778899999999999977665533    233445889999999


Q ss_pred             cCCCC-CCCC-cccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEE
Q 036258          163 LGMNK-LRTI-PNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLG  240 (331)
Q Consensus       163 l~~~~-l~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~  240 (331)
                      +++|. +..+ +..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+...+       +..+..+++|++|+
T Consensus        87 l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-------~~~~~~l~~L~~L~  159 (285)
T 1ozn_A           87 LSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP-------DDTFRDLGNLTHLF  159 (285)
T ss_dssp             CCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-------TTTTTTCTTCCEEE
T ss_pred             CCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccC-------HhHhccCCCccEEE
Confidence            99997 7766 578899999999999999999888888999999999999999998743       33478899999999


Q ss_pred             eecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEeccCCeee
Q 036258          241 LHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQ  320 (331)
Q Consensus       241 l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  320 (331)
                      +++|.+.+..+..+..+. +|+.|++++|.+.+..|.++..+++|+.|++++|.+++..+..+..+++|+.|++++|+++
T Consensus       160 l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          160 LHGNRISSVPERAFRGLH-SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             CCSSCCCEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             CCCCcccccCHHHhcCcc-ccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence            999999866666677776 9999999999999888999999999999999999999655567899999999999999998


Q ss_pred             ecCC
Q 036258          321 GSIP  324 (331)
Q Consensus       321 ~~~p  324 (331)
                      ...+
T Consensus       239 c~~~  242 (285)
T 1ozn_A          239 CDCR  242 (285)
T ss_dssp             CSGG
T ss_pred             CCCC
Confidence            6554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=2.2e-26  Score=207.78  Aligned_cols=227  Identities=24%  Similarity=0.240  Sum_probs=196.5

Q ss_pred             CCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccc
Q 036258           55 SSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLV  134 (331)
Q Consensus        55 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  134 (331)
                      ++++.|++++|.+. .++...|..+++|++|+|++|.+....+..|.++++|++|++++|.++...+..|..+++|++|+
T Consensus        64 ~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  142 (440)
T 3zyj_A           64 TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW  142 (440)
T ss_dssp             TTCSEEECCSCCCC-EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred             CCCcEEEccCCcCC-eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence            67999999999998 66666679999999999999999988888899999999999999999966667899999999999


Q ss_pred             cCccccccccccCCcchhcCCCCCcEEEcCCC-CCCCCc-ccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccC
Q 036258          135 LGHKAHNSLHGHLPSTLSVSLPNLKWLALGMN-KLRTIP-NSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGN  212 (331)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~  212 (331)
                      +++|.+..    ++...+..+++|++|++.++ .+..++ ..+..+++|++|++++|.+... | .+..+++|++|++++
T Consensus       143 L~~N~i~~----~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~  216 (440)
T 3zyj_A          143 LRNNPIES----IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-P-NLTPLIKLDELDLSG  216 (440)
T ss_dssp             CCSCCCCE----ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-C-CCTTCSSCCEEECTT
T ss_pred             CCCCcccc----cCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-c-ccCCCcccCEEECCC
Confidence            98777653    44555668999999999884 455555 5788999999999999999854 4 478899999999999


Q ss_pred             CcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccC
Q 036258          213 NYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQD  292 (331)
Q Consensus       213 ~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  292 (331)
                      |.+..+       .+..+..+++|++|++++|.+.+..+..+..++ +|+.|+|++|++++..+..+..+++|+.|++++
T Consensus       217 N~l~~~-------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  288 (440)
T 3zyj_A          217 NHLSAI-------RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQ-SLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH  288 (440)
T ss_dssp             SCCCEE-------CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCT-TCCEEECTTSCCCCCCTTTTSSCTTCCEEECCS
T ss_pred             CccCcc-------ChhhhccCccCCEEECCCCceeEEChhhhcCCC-CCCEEECCCCCCCccChhHhccccCCCEEEcCC
Confidence            999874       345689999999999999999988888888777 999999999999977777889999999999999


Q ss_pred             CCCc
Q 036258          293 NDLN  296 (331)
Q Consensus       293 n~l~  296 (331)
                      |++.
T Consensus       289 Np~~  292 (440)
T 3zyj_A          289 NPWN  292 (440)
T ss_dssp             SCEE
T ss_pred             CCcc
Confidence            9864

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.95  E-value=6.1e-26  Score=206.33  Aligned_cols=149  Identities=27%  Similarity=0.405  Sum_probs=103.2

Q ss_pred             CCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccC
Q 036258          154 SLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNC  233 (331)
Q Consensus       154 ~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~  233 (331)
                      .+++|++|++++|.+..++. +..+++|++|++++|.+.+..+  +..+++|++|++++|.+...        + .+..+
T Consensus       241 ~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~--------~-~~~~l  308 (466)
T 1o6v_A          241 SLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI--------S-PISNL  308 (466)
T ss_dssp             GCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCC--------G-GGGGC
T ss_pred             cCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCc--------h-hhcCC
Confidence            45566666666666554443 5556666666666666654322  55666677777766666542        1 16677


Q ss_pred             CCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEe
Q 036258          234 IYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLF  313 (331)
Q Consensus       234 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  313 (331)
                      ++|++|++++|.+.+..|  +..++ +|+.|++++|.+.+.  ..+..+++|+.|++++|.+++..|  +..+++|+.|+
T Consensus       309 ~~L~~L~L~~n~l~~~~~--~~~l~-~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~  381 (466)
T 1o6v_A          309 KNLTYLTLYFNNISDISP--VSSLT-KLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLG  381 (466)
T ss_dssp             TTCSEEECCSSCCSCCGG--GGGCT-TCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEE
T ss_pred             CCCCEEECcCCcCCCchh--hccCc-cCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEe
Confidence            888888888888775554  44444 888888888888743  467888888888888888886555  77888899999


Q ss_pred             ccCCeeee
Q 036258          314 LFGNNLQG  321 (331)
Q Consensus       314 l~~n~~~~  321 (331)
                      +++|.+++
T Consensus       382 l~~n~~~~  389 (466)
T 1o6v_A          382 LNDQAWTN  389 (466)
T ss_dssp             CCCEEEEC
T ss_pred             ccCCcccC
Confidence            99998885

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=1.9e-28  Score=211.20  Aligned_cols=253  Identities=22%  Similarity=0.225  Sum_probs=200.6

Q ss_pred             hhcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCccc-ccCCccCc-------CCCCCCEEEccCccccccCC
Q 036258           50 CFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFF-GQIPLSLS-------KCTQLQHLWLEHNKFTGRLP  121 (331)
Q Consensus        50 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~-~~~~~~~~-------~l~~L~~L~l~~n~~~~~~~  121 (331)
                      .+...++|+.|++++|.+  .+|..++..   |+.|++++|.+. ...|..+.       .+++|++|++++|.+++..|
T Consensus        38 ~~~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  112 (312)
T 1wwl_A           38 LYGGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAP  112 (312)
T ss_dssp             EEEEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCC
T ss_pred             EEccCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhH
Confidence            466778899999999988  788877443   889999999884 34555554       68999999999999998888


Q ss_pred             ccc--cCcccccccccCccccccccccCCcchhcCC-----CCCcEEEcCCCCCCCCc-ccccCCCCCceeeCcCccccc
Q 036258          122 ENI--GNLSKLRSLVLGHKAHNSLHGHLPSTLSVSL-----PNLKWLALGMNKLRTIP-NSITNASELTLLELGKNSFSG  193 (331)
Q Consensus       122 ~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~n~~~~  193 (331)
                      ..+  ..+++|++|++++|.....    +..+ ..+     ++|++|++++|.+..++ ..+..+++|++|++++|.+.+
T Consensus       113 ~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~-~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  187 (312)
T 1wwl_A          113 PPLLEATGPDLNILNLRNVSWATR----DAWL-AELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG  187 (312)
T ss_dssp             CCSSSCCSCCCSEEEEESCBCSSS----SSHH-HHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCH
T ss_pred             HHHHHhcCCCccEEEccCCCCcch----hHHH-HHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCc
Confidence            876  8899999999977766543    2222 233     89999999999998766 789999999999999999764


Q ss_pred             c--Cchhc--cCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccC
Q 036258          194 L--VPNTF--GNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDC  269 (331)
Q Consensus       194 ~--~~~~l--~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~  269 (331)
                      .  .+..+  ..+++|++|++++|.+...+.    .....+..+++|++|++++|.+.+..|.......++|++|++++|
T Consensus       188 ~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N  263 (312)
T 1wwl_A          188 ERGLISALCPLKFPTLQVLALRNAGMETPSG----VCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT  263 (312)
T ss_dssp             HHHHHHHSCTTSCTTCCEEECTTSCCCCHHH----HHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTS
T ss_pred             chHHHHHHHhccCCCCCEEECCCCcCcchHH----HHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCC
Confidence            3  23333  788999999999999884321    111234578999999999999987765333333349999999999


Q ss_pred             cccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEeccCCeeee
Q 036258          270 ELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQG  321 (331)
Q Consensus       270 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~  321 (331)
                      .++ .+|..+.  ++|+.|++++|.+++ +|. +..+++|++|++++|++++
T Consensus       264 ~l~-~ip~~~~--~~L~~L~Ls~N~l~~-~p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          264 GLK-QVPKGLP--AKLSVLDLSYNRLDR-NPS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             CCS-SCCSSCC--SEEEEEECCSSCCCS-CCC-TTTSCEEEEEECTTCTTTC
T ss_pred             ccC-hhhhhcc--CCceEEECCCCCCCC-Chh-HhhCCCCCEEeccCCCCCC
Confidence            998 7887776  889999999999995 466 8899999999999999884

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.94  E-value=1.2e-26  Score=203.47  Aligned_cols=247  Identities=19%  Similarity=0.203  Sum_probs=194.8

Q ss_pred             CCCCCcchhcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCC-
Q 036258           43 YSVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLP-  121 (331)
Q Consensus        43 ~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-  121 (331)
                      ...++...|.++++|++|++++|.++ .++...|..+++|++|++++|.+.+..+..|+.+++|++|++++|.++...+ 
T Consensus        64 i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~  142 (353)
T 2z80_A           64 ITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGET  142 (353)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSS
T ss_pred             CcccCHHHhccCCCCCEEECCCCccC-ccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCch
Confidence            44445557899999999999999998 5665556899999999999999986555558999999999999999984333 


Q ss_pred             ccccCcccccccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCC-cccccCCCCCceeeCcCccccccCchhcc
Q 036258          122 ENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTI-PNSITNASELTLLELGKNSFSGLVPNTFG  200 (331)
Q Consensus       122 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~l~  200 (331)
                      ..+..+++|++|++++|.   ....++...+..+++|++|++++|.+..+ +..+..+++|++|++++|.+....+..+.
T Consensus       143 ~~~~~l~~L~~L~l~~n~---~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~  219 (353)
T 2z80_A          143 SLFSHLTKLQILRVGNMD---TFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVD  219 (353)
T ss_dssp             CSCTTCTTCCEEEEEESS---SCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHH
T ss_pred             hhhccCCCCcEEECCCCc---cccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhh
Confidence            478899999999997653   11233444455889999999999998854 68899999999999999998755555556


Q ss_pred             CCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccc----cCCchhhhccccccEEEeccCcccccCC
Q 036258          201 NLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSG----ILPPLIGNFSDSLQQFYAYDCELKGSIP  276 (331)
Q Consensus       201 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~~~  276 (331)
                      .+++|++|++++|.+...+..    ..........++.+++.++.+.+    .+|..+..++ +|+.|++++|.++ .+|
T Consensus       220 ~~~~L~~L~L~~n~l~~~~~~----~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~-~L~~L~Ls~N~l~-~i~  293 (353)
T 2z80_A          220 VTSSVECLELRDTDLDTFHFS----ELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQIS-GLLELEFSRNQLK-SVP  293 (353)
T ss_dssp             HTTTEEEEEEESCBCTTCCCC----------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCT-TCCEEECCSSCCC-CCC
T ss_pred             hcccccEEECCCCcccccccc----ccccccccchhhccccccccccCcchhhhHHHHhccc-CCCEEECCCCCCC-ccC
Confidence            789999999999999875432    12223456778899999888764    3566666666 9999999999999 566


Q ss_pred             cc-ccCCCCCCEEEccCCCCcccC
Q 036258          277 QE-IGNLNGLIDLRLQDNDLNGTI  299 (331)
Q Consensus       277 ~~-l~~l~~L~~L~l~~n~l~~~~  299 (331)
                      .. +..+++|+.|++++|++.+..
T Consensus       294 ~~~~~~l~~L~~L~L~~N~~~~~~  317 (353)
T 2z80_A          294 DGIFDRLTSLQKIWLHTNPWDCSC  317 (353)
T ss_dssp             TTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             HHHHhcCCCCCEEEeeCCCccCcC
Confidence            55 589999999999999998543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.94  E-value=3.5e-25  Score=200.24  Aligned_cols=211  Identities=21%  Similarity=0.219  Sum_probs=124.6

Q ss_pred             hhcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCccc
Q 036258           50 CFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSK  129 (331)
Q Consensus        50 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~  129 (331)
                      .+.++++|++|++++|.++ .+| . +..+++|++|++++|.+.+. |  ++.+++|++|++++|.+++. +  +..+++
T Consensus        37 ~~~~l~~L~~L~Ls~n~l~-~~~-~-l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~  107 (457)
T 3bz5_A           37 SEEQLATLTSLDCHNSSIT-DMT-G-IEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTK  107 (457)
T ss_dssp             EHHHHTTCCEEECCSSCCC-CCT-T-GGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTT
T ss_pred             ChhHcCCCCEEEccCCCcc-cCh-h-hcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCc
Confidence            4666777777777777776 455 3 36677777777777777643 3  67777777777777777643 2  667777


Q ss_pred             ccccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEE
Q 036258          130 LRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLD  209 (331)
Q Consensus       130 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~  209 (331)
                      |++|++++|....+    +   +..+++|++|++++|.++.++  +..+++|++|++++|...+..  .+..+++|++|+
T Consensus       108 L~~L~L~~N~l~~l----~---~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~  176 (457)
T 3bz5_A          108 LTYLNCDTNKLTKL----D---VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLD  176 (457)
T ss_dssp             CCEEECCSSCCSCC----C---CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEE
T ss_pred             CCEEECCCCcCCee----c---CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEE
Confidence            77777766555432    1   236677777777777776553  556666666666666433222  345556666666


Q ss_pred             ccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEE
Q 036258          210 LGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLR  289 (331)
Q Consensus       210 l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~  289 (331)
                      +++|.++.++          +..+++|++|++++|.+.+.   .+..++ +|+.|++++|++++ +|  +..+++|+.|+
T Consensus       177 ls~n~l~~l~----------l~~l~~L~~L~l~~N~l~~~---~l~~l~-~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~  239 (457)
T 3bz5_A          177 CSFNKITELD----------VSQNKLLNRLNCDTNNITKL---DLNQNI-QLTFLDCSSNKLTE-ID--VTPLTQLTYFD  239 (457)
T ss_dssp             CCSSCCCCCC----------CTTCTTCCEEECCSSCCSCC---CCTTCT-TCSEEECCSSCCSC-CC--CTTCTTCSEEE
T ss_pred             CCCCccceec----------cccCCCCCEEECcCCcCCee---ccccCC-CCCEEECcCCcccc-cC--ccccCCCCEEE
Confidence            6666655421          34445555555555555432   123332 55555555555543 33  44455555555


Q ss_pred             ccCCCCcc
Q 036258          290 LQDNDLNG  297 (331)
Q Consensus       290 l~~n~l~~  297 (331)
                      +++|.+++
T Consensus       240 l~~N~l~~  247 (457)
T 3bz5_A          240 CSVNPLTE  247 (457)
T ss_dssp             CCSSCCSC
T ss_pred             eeCCcCCC
Confidence            55555543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.94  E-value=1.6e-26  Score=210.70  Aligned_cols=236  Identities=20%  Similarity=0.180  Sum_probs=182.1

Q ss_pred             CCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccc
Q 036258           53 NISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRS  132 (331)
Q Consensus        53 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  132 (331)
                      .+++|++|++++|.+. .++...|..+++|++|+|++|.+.+..|  +..+++|++|++++|.+++. +    ..++|++
T Consensus        32 ~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~----~~~~L~~  103 (487)
T 3oja_A           32 SAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSIET  103 (487)
T ss_dssp             TGGGCCEEECCSSCCC-CCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-E----ECTTCCE
T ss_pred             cCCCccEEEeeCCcCC-CCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-C----CCCCcCE
Confidence            3458999999999988 5665556889999999999998876554  88899999999999988732 2    2378899


Q ss_pred             cccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCC-cccccCCCCCceeeCcCccccccCchhcc-CCCCCCEEEc
Q 036258          133 LVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTI-PNSITNASELTLLELGKNSFSGLVPNTFG-NLRFLSLLDL  210 (331)
Q Consensus       133 L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~l~-~~~~L~~L~l  210 (331)
                      |++++|.+.....       ..+++|++|++++|.+..+ |..+..+++|+.|++++|.+.+..+..+. .+++|++|++
T Consensus       104 L~L~~N~l~~~~~-------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~L  176 (487)
T 3oja_A          104 LHAANNNISRVSC-------SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL  176 (487)
T ss_dssp             EECCSSCCCCEEE-------CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred             EECcCCcCCCCCc-------cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEec
Confidence            9997766654432       1467899999999988865 46778888999999999988877676665 6888999999


Q ss_pred             cCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEc
Q 036258          211 GNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRL  290 (331)
Q Consensus       211 ~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  290 (331)
                      ++|.+...+         ....+++|++|++++|.+.+ +|..+..++ +|+.|++++|.++ .+|..+..+++|+.|++
T Consensus       177 s~N~l~~~~---------~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~-~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l  244 (487)
T 3oja_A          177 QYNFIYDVK---------GQVVFAKLKTLDLSSNKLAF-MGPEFQSAA-GVTWISLRNNKLV-LIEKALRFSQNLEHFDL  244 (487)
T ss_dssp             TTSCCCEEE---------CCCCCTTCCEEECCSSCCCE-ECGGGGGGT-TCSEEECTTSCCC-EECTTCCCCTTCCEEEC
T ss_pred             CCCcccccc---------ccccCCCCCEEECCCCCCCC-CCHhHcCCC-CccEEEecCCcCc-ccchhhccCCCCCEEEc
Confidence            998887642         13357888899999888885 444466665 8888888888888 46777888888888888


Q ss_pred             cCCCCc-ccCCcCccCCCCCCeEecc
Q 036258          291 QDNDLN-GTIPTTVGRLQQLQGLFLF  315 (331)
Q Consensus       291 ~~n~l~-~~~~~~l~~l~~L~~L~l~  315 (331)
                      ++|++. +.+|..+..++.|+.+++.
T Consensus       245 ~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          245 RGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             TTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCCCcCcchHHHHHhCCCCcEEecc
Confidence            888887 5566667777778877775

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.94  E-value=5.2e-25  Score=186.48  Aligned_cols=221  Identities=22%  Similarity=0.199  Sum_probs=135.3

Q ss_pred             EEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccccCcc
Q 036258           59 MIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHK  138 (331)
Q Consensus        59 ~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~  138 (331)
                      .++.++..+. .+|..+   .++|++|++++|.+.+..+..|..+++|++|++++|.++...+..+..+++|++|++++|
T Consensus        11 ~~~c~~~~l~-~ip~~l---~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n   86 (276)
T 2z62_A           11 TYQCMELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN   86 (276)
T ss_dssp             EEECTTSCCS-SCCSSS---CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             eEEecCCCcc-ccCCCC---CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC
Confidence            4666666676 777655   367889999988888776667888888999999888887665666777777777777655


Q ss_pred             ccccccccCCcchhcCCCCCcEEEcCCCCCCCCcc-cccCCCCCceeeCcCcccccc-CchhccCCCCCCEEEccCCccc
Q 036258          139 AHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPN-SITNASELTLLELGKNSFSGL-VPNTFGNLRFLSLLDLGNNYLT  216 (331)
Q Consensus       139 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~l~~L~~L~l~~n~~~~~-~~~~l~~~~~L~~L~l~~~~l~  216 (331)
                      .....    +...+..+++|++|++.+|.+..++. .+..+++|++|++++|.+... .|..+..+++|++|++++|.+.
T Consensus        87 ~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~  162 (276)
T 2z62_A           87 PIQSL----ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  162 (276)
T ss_dssp             CCCEE----CTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             ccCcc----ChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC
Confidence            54322    22233356677777777776665442 466666677777766666543 3556666666666666666665


Q ss_pred             CccCCCccccccccccCCCCc----EEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccC
Q 036258          217 TRSSTTEWSFLSSLTNCIYLK----VLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQD  292 (331)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~L~----~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  292 (331)
                      .++       +..+..+++|+    +|++++|.+.+..+..+. .. +|+.|++++|.+++..+..+..+++|+.|++++
T Consensus       163 ~~~-------~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~  233 (276)
T 2z62_A          163 SIY-------CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EI-RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT  233 (276)
T ss_dssp             EEC-------GGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SC-CEEEEECCSSCCSCCCTTTTTTCCSCCEEECCS
T ss_pred             cCC-------HHHhhhhhhccccceeeecCCCcccccCccccC-CC-cccEEECCCCceeecCHhHhcccccccEEEccC
Confidence            432       12233333333    566666665533333222 22 555566655555543334445555555555555


Q ss_pred             CCCc
Q 036258          293 NDLN  296 (331)
Q Consensus       293 n~l~  296 (331)
                      |++.
T Consensus       234 N~~~  237 (276)
T 2z62_A          234 NPWD  237 (276)
T ss_dssp             SCBC
T ss_pred             Cccc
Confidence            5555

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.94  E-value=4.2e-25  Score=199.70  Aligned_cols=236  Identities=20%  Similarity=0.217  Sum_probs=144.1

Q ss_pred             hhcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCccc
Q 036258           50 CFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSK  129 (331)
Q Consensus        50 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~  129 (331)
                      .|..+++|++|++++|.++ .+|   +..+++|++|++++|.+.+. +  ++.+++|++|++++|.+++ ++  +..+++
T Consensus        59 ~l~~l~~L~~L~Ls~n~l~-~~~---~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~  128 (457)
T 3bz5_A           59 GIEKLTGLTKLICTSNNIT-TLD---LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPL  128 (457)
T ss_dssp             TGGGCTTCSEEECCSSCCS-CCC---CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTT
T ss_pred             hhcccCCCCEEEccCCcCC-eEc---cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCc
Confidence            4888999999999999998 565   47899999999999998754 3  7889999999999998885 33  778889


Q ss_pred             ccccccCccccccccccCCcchhcCCCCCcEEEcCCCC-CCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEE
Q 036258          130 LRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNK-LRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLL  208 (331)
Q Consensus       130 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L  208 (331)
                      |++|++++|....+.       +..+++|++|++++|. +..+  .+..+++|+.|++++|.+.+. +  +..+++|++|
T Consensus       129 L~~L~l~~N~l~~l~-------l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l-~--l~~l~~L~~L  196 (457)
T 3bz5_A          129 LTYLNCARNTLTEID-------VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITEL-D--VSQNKLLNRL  196 (457)
T ss_dssp             CCEEECTTSCCSCCC-------CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCC-C--CTTCTTCCEE
T ss_pred             CCEEECCCCccceec-------cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcccee-c--cccCCCCCEE
Confidence            999999776655431       1255666666666663 3333  244555666666666655542 2  4455555555


Q ss_pred             EccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCcc----------
Q 036258          209 DLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQE----------  278 (331)
Q Consensus       209 ~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----------  278 (331)
                      ++++|.++..          .+..+++|++|++++|.+.+ +|  +..++ +|+.|++++|.+.+..+..          
T Consensus       197 ~l~~N~l~~~----------~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~-~L~~L~l~~N~l~~~~~~~l~~L~~L~l~  262 (457)
T 3bz5_A          197 NCDTNNITKL----------DLNQNIQLTFLDCSSNKLTE-ID--VTPLT-QLTYFDCSVNPLTELDVSTLSKLTTLHCI  262 (457)
T ss_dssp             ECCSSCCSCC----------CCTTCTTCSEEECCSSCCSC-CC--CTTCT-TCSEEECCSSCCSCCCCTTCTTCCEEECT
T ss_pred             ECcCCcCCee----------ccccCCCCCEEECcCCcccc-cC--ccccC-CCCEEEeeCCcCCCcCHHHCCCCCEEecc
Confidence            5555555532          13444555555555555543 23  23332 4555555555544322211          


Q ss_pred             -------------------ccCCCCCCEEEccCCCCcccCCc--------CccCCCCCCeEeccCCeeee
Q 036258          279 -------------------IGNLNGLIDLRLQDNDLNGTIPT--------TVGRLQQLQGLFLFGNNLQG  321 (331)
Q Consensus       279 -------------------l~~l~~L~~L~l~~n~l~~~~~~--------~l~~l~~L~~L~l~~n~~~~  321 (331)
                                         +..+++|+.|++++|...+.+|.        .+..+++|+.|++++|.+++
T Consensus       263 ~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~  332 (457)
T 3bz5_A          263 QTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE  332 (457)
T ss_dssp             TCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC
T ss_pred             CCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc
Confidence                               23445555555555554333321        13445666666666666664

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=2e-26  Score=210.09  Aligned_cols=226  Identities=22%  Similarity=0.211  Sum_probs=191.4

Q ss_pred             CCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccccCccccccccccCCcchhcCCCCC
Q 036258           79 LPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNL  158 (331)
Q Consensus        79 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L  158 (331)
                      +++|++|++++|.+.+..|..|..+++|++|++++|.+++..|  +..+++|++|++++|.+..+.         ..++|
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~---------~~~~L  101 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL---------VGPSI  101 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE---------ECTTC
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC---------CCCCc
Confidence            4489999999999998878899999999999999999986554  889999999999877665432         34899


Q ss_pred             cEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccc-cCCCCc
Q 036258          159 KWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLT-NCIYLK  237 (331)
Q Consensus       159 ~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~-~~~~L~  237 (331)
                      ++|++++|.+..++.  ..+++|+.|++++|.+.+..+..+..+++|++|++++|.+...       .+..+. .+++|+
T Consensus       102 ~~L~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-------~~~~l~~~l~~L~  172 (487)
T 3oja_A          102 ETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV-------NFAELAASSDTLE  172 (487)
T ss_dssp             CEEECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEE-------EGGGGGGGTTTCC
T ss_pred             CEEECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCc-------ChHHHhhhCCccc
Confidence            999999999987654  3468999999999999988888899999999999999999873       344454 789999


Q ss_pred             EEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEeccCC
Q 036258          238 VLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGN  317 (331)
Q Consensus       238 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  317 (331)
                      +|++++|.+.+..+..  .+ ++|+.|++++|.+++ +|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|
T Consensus       173 ~L~Ls~N~l~~~~~~~--~l-~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N  247 (487)
T 3oja_A          173 HLNLQYNFIYDVKGQV--VF-AKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGN  247 (487)
T ss_dssp             EEECTTSCCCEEECCC--CC-TTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTC
T ss_pred             EEecCCCccccccccc--cC-CCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCC
Confidence            9999999998663332  23 499999999999995 5556899999999999999999 58888999999999999999


Q ss_pred             eee-ecCCccccC
Q 036258          318 NLQ-GSIPSDLCH  329 (331)
Q Consensus       318 ~~~-~~~p~~~~~  329 (331)
                      +++ +.+|..+..
T Consensus       248 ~l~c~~~~~~~~~  260 (487)
T 3oja_A          248 GFHCGTLRDFFSK  260 (487)
T ss_dssp             CBCHHHHHHHHTT
T ss_pred             CCcCcchHHHHHh
Confidence            988 566655543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.92  E-value=6.9e-24  Score=191.58  Aligned_cols=248  Identities=25%  Similarity=0.316  Sum_probs=134.1

Q ss_pred             CCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccc
Q 036258           55 SSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLV  134 (331)
Q Consensus        55 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  134 (331)
                      ++|++|++++|.++ .+|.  |..+++|++|++++|.+.+ +|..   ..+|++|++++|.+++ +| .+.++++|++|+
T Consensus       131 ~~L~~L~L~~n~l~-~lp~--~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~  201 (454)
T 1jl5_A          131 PLLEYLGVSNNQLE-KLPE--LQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIY  201 (454)
T ss_dssp             TTCCEEECCSSCCS-SCCC--CTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEE
T ss_pred             CCCCEEECcCCCCC-CCcc--cCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEE
Confidence            57888888888887 5773  5778888888888888764 4443   2478888888887774 45 577777888887


Q ss_pred             cCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhc---------------
Q 036258          135 LGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTF---------------  199 (331)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l---------------  199 (331)
                      +++|....+.    .    ..++|++|++++|.+..+|. +..+++|++|++++|.+.+. |..+               
T Consensus       202 l~~N~l~~l~----~----~~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~l-~~~~~~L~~L~l~~N~l~~  271 (454)
T 1jl5_A          202 ADNNSLKKLP----D----LPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTL-PDLPPSLEALNVRDNYLTD  271 (454)
T ss_dssp             CCSSCCSSCC----C----CCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSC-CSCCTTCCEEECCSSCCSC
T ss_pred             CCCCcCCcCC----C----CcCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCcc-cccccccCEEECCCCcccc
Confidence            7666554321    1    12355555555555555542 55555555555555555431 1110               


Q ss_pred             --cCCCCCCEEEccCCcccCccCCC-ccc-------cccccccC-CCCcEEEeecccccccCCchhhhccccccEEEecc
Q 036258          200 --GNLRFLSLLDLGNNYLTTRSSTT-EWS-------FLSSLTNC-IYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYD  268 (331)
Q Consensus       200 --~~~~~L~~L~l~~~~l~~~~~~~-~~~-------~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~  268 (331)
                        ..+++|++|++++|.+..++... ...       -...+... ++|++|++++|.+.+ +|..+    ++|+.|++++
T Consensus       272 l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~~----~~L~~L~L~~  346 (454)
T 1jl5_A          272 LPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALP----PRLERLIASF  346 (454)
T ss_dssp             CCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCCC----TTCCEEECCS
T ss_pred             cCcccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-ccccC----CcCCEEECCC
Confidence              01234555555555544321100 000       00001122 367777777777663 44432    3788888888


Q ss_pred             CcccccCCccccCCCCCCEEEccCCCCcc--cCCcCccCC-------------CCCCeEeccCCeeee--cCCccccCC
Q 036258          269 CELKGSIPQEIGNLNGLIDLRLQDNDLNG--TIPTTVGRL-------------QQLQGLFLFGNNLQG--SIPSDLCHW  330 (331)
Q Consensus       269 ~~~~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~l-------------~~L~~L~l~~n~~~~--~~p~~~~~~  330 (331)
                      |.++ .+|.   .+++|+.|++++|.+++  .+|..+..+             ++|+.|++++|++++  .+|+++.++
T Consensus       347 N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~~L  421 (454)
T 1jl5_A          347 NHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVEDL  421 (454)
T ss_dssp             SCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------------------
T ss_pred             Cccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhhHhhe
Confidence            8777 4555   46788888888888887  677777766             778888888888887  788777654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=5e-24  Score=198.44  Aligned_cols=233  Identities=27%  Similarity=0.307  Sum_probs=153.8

Q ss_pred             CCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccc
Q 036258           55 SSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLV  134 (331)
Q Consensus        55 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  134 (331)
                      ++|++|++++|.++ .+|.    .+++|++|++++|.++ .+|.   .+++|++|++++|.++. +|.   .+++|+.|+
T Consensus        61 ~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~  127 (622)
T 3g06_A           61 AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLW  127 (622)
T ss_dssp             TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEE
T ss_pred             CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEE
Confidence            67888888888877 6765    4678888888888776 3443   56778888888887773 343   456677777


Q ss_pred             cCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCc
Q 036258          135 LGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNY  214 (331)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~  214 (331)
                      +++|....+    +.    .+++|++|++++|.+..+|..   +.+|+.|++++|.+... |   ..+++|++|++++|.
T Consensus       128 L~~N~l~~l----p~----~l~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l-~---~~~~~L~~L~Ls~N~  192 (622)
T 3g06_A          128 IFGNQLTSL----PV----LPPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLTSL-P---MLPSGLQELSVSDNQ  192 (622)
T ss_dssp             CCSSCCSCC----CC----CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSC
T ss_pred             CCCCCCCcC----CC----CCCCCCEEECcCCcCCCcCCc---cCCCCEEECCCCCCCCC-c---ccCCCCcEEECCCCC
Confidence            766555432    22    246677777777766655532   23444455554444432 1   223445555555554


Q ss_pred             ccCccCCCcc------------ccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCC
Q 036258          215 LTTRSSTTEW------------SFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNL  282 (331)
Q Consensus       215 l~~~~~~~~~------------~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l  282 (331)
                      +..++.....            .++   ..+++|++|++++|.+.+ +|.    ..++|+.|++++|.++ .+|.   .+
T Consensus       193 l~~l~~~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~L~~-lp~----~l~~L~~L~Ls~N~L~-~lp~---~~  260 (622)
T 3g06_A          193 LASLPTLPSELYKLWAYNNRLTSLP---ALPSGLKELIVSGNRLTS-LPV----LPSELKELMVSGNRLT-SLPM---LP  260 (622)
T ss_dssp             CSCCCCCCTTCCEEECCSSCCSSCC---CCCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCS-CCCC---CC
T ss_pred             CCCCCCccchhhEEECcCCcccccC---CCCCCCCEEEccCCccCc-CCC----CCCcCcEEECCCCCCC-cCCc---cc
Confidence            4432211000            011   123778999999998874 552    2248999999999888 5665   66


Q ss_pred             CCCCEEEccCCCCcccCCcCccCCCCCCeEeccCCeeeecCCcccc
Q 036258          283 NGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDLC  328 (331)
Q Consensus       283 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~  328 (331)
                      ++|+.|++++|.++ .+|..+..+++|+.|++++|++++.+|+.+.
T Consensus       261 ~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~  305 (622)
T 3g06_A          261 SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR  305 (622)
T ss_dssp             TTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred             ccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence            78999999999999 7888899999999999999999987776553

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=3e-25  Score=191.19  Aligned_cols=224  Identities=19%  Similarity=0.210  Sum_probs=180.9

Q ss_pred             ccEEEcCCCcCc-cCCChhhh------cCCCCCcEEEccCCcccccCCccC--cCCCCCCEEEccCccccccCCccccCc
Q 036258           57 LKMIRLSSNSLS-GSLPNDLC------NRLPSLEQLVLRSNGFFGQIPLSL--SKCTQLQHLWLEHNKFTGRLPENIGNL  127 (331)
Q Consensus        57 L~~L~l~~~~i~-~~~~~~~~------~~~~~L~~L~L~~n~i~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~~~~~~l  127 (331)
                      |++|++++|.+. ..+|..++      ..+++|++|++++|.+.+..|..+  ..+++|++|++++|.+++. |..+..+
T Consensus        65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l  143 (312)
T 1wwl_A           65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAEL  143 (312)
T ss_dssp             HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHH
T ss_pred             HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHH
Confidence            888999999884 45666552      158999999999999988888876  8999999999999999965 7777777


Q ss_pred             -----ccccccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCC---Ccccc--cCCCCCceeeCcCccccc---c
Q 036258          128 -----SKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRT---IPNSI--TNASELTLLELGKNSFSG---L  194 (331)
Q Consensus       128 -----~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~---~~~~~--~~l~~L~~L~l~~n~~~~---~  194 (331)
                           ++|++|++++|....    ++...+..+++|++|++++|.+..   ++..+  ..+++|++|++++|.+.+   .
T Consensus       144 ~~~~~~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  219 (312)
T 1wwl_A          144 QQWLKPGLKVLSIAQAHSLN----FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGV  219 (312)
T ss_dssp             HTTCCTTCCEEEEESCSCCC----CCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHH
T ss_pred             HHhhcCCCcEEEeeCCCCcc----chHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHH
Confidence                 899999997766643    333344589999999999998652   23334  788999999999999873   2


Q ss_pred             CchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCccccc
Q 036258          195 VPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGS  274 (331)
Q Consensus       195 ~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  274 (331)
                      ....+..+++|++|++++|.+.....      ...+..+++|++|++++|.++ .+|..+.   ++|++|++++|++++.
T Consensus       220 ~~~~~~~l~~L~~L~Ls~N~l~~~~~------~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~---~~L~~L~Ls~N~l~~~  289 (312)
T 1wwl_A          220 CSALAAARVQLQGLDLSHNSLRDAAG------APSCDWPSQLNSLNLSFTGLK-QVPKGLP---AKLSVLDLSYNRLDRN  289 (312)
T ss_dssp             HHHHHHTTCCCSEEECTTSCCCSSCC------CSCCCCCTTCCEEECTTSCCS-SCCSSCC---SEEEEEECCSSCCCSC
T ss_pred             HHHHHhcCCCCCEEECCCCcCCcccc------hhhhhhcCCCCEEECCCCccC-hhhhhcc---CCceEEECCCCCCCCC
Confidence            23455678999999999999987431      133566899999999999998 7777665   4999999999999854


Q ss_pred             CCccccCCCCCCEEEccCCCCcc
Q 036258          275 IPQEIGNLNGLIDLRLQDNDLNG  297 (331)
Q Consensus       275 ~~~~l~~l~~L~~L~l~~n~l~~  297 (331)
                       |. +..+++|++|++++|++++
T Consensus       290 -p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          290 -PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             -CC-TTTSCEEEEEECTTCTTTC
T ss_pred             -hh-HhhCCCCCEEeccCCCCCC
Confidence             65 8999999999999999984

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=2.8e-23  Score=175.19  Aligned_cols=154  Identities=27%  Similarity=0.362  Sum_probs=94.0

Q ss_pred             CccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCccccccccc
Q 036258           56 SLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVL  135 (331)
Q Consensus        56 ~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  135 (331)
                      ..+.++++++.++ .+|..+   .++++.|++++|.+.+..+..|..+++|++|++++|.++...+..|..+++|++|++
T Consensus        17 ~~~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           17 NKNSVDCSSKKLT-AIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred             CCCEEEccCCCCC-ccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence            5778999998888 788655   467899999999888766667888899999999888887444444566666666666


Q ss_pred             CccccccccccCCcchhcCCCCCcEEEcCCCCCCCCc-ccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCc
Q 036258          136 GHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIP-NSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNY  214 (331)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~  214 (331)
                      ++|....    ++...+..+++|++|++++|.+..++ ..+..+++|++|++++|.+....+..+..+++|++|++++|.
T Consensus        93 ~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  168 (270)
T 2o6q_A           93 TDNKLQA----LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ  168 (270)
T ss_dssp             CSSCCCC----CCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCcCCc----CCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc
Confidence            5444332    22233334555555555555554333 234444555555555554444433444444445555554444


Q ss_pred             ccC
Q 036258          215 LTT  217 (331)
Q Consensus       215 l~~  217 (331)
                      +..
T Consensus       169 l~~  171 (270)
T 2o6q_A          169 LKR  171 (270)
T ss_dssp             CSC
T ss_pred             CcE
Confidence            443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.92  E-value=1.3e-23  Score=178.91  Aligned_cols=202  Identities=26%  Similarity=0.283  Sum_probs=145.3

Q ss_pred             hcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccc
Q 036258           51 FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKL  130 (331)
Q Consensus        51 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L  130 (331)
                      +.+++++++++++++.++ .+|..+   .++++.|++++|.+.+..+..|..+++|++|++++|.++.. +.. ..+++|
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~-~~l~~L   79 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD-GTLPVL   79 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC-SCCTTC
T ss_pred             ccccCCccEEECCCCCCC-cCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cCC-CCCCcC
Confidence            677889999999999998 888766   47899999999999877778889999999999999988743 322 567777


Q ss_pred             cccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCc-ccccCCCCCceeeCcCccccccCchhccCCCCCCEEE
Q 036258          131 RSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIP-NSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLD  209 (331)
Q Consensus       131 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~  209 (331)
                      ++|++++|....+    +... ..+++|++|++++|.++.++ ..|..+++|++|++++|.+....+..|..+++|++|+
T Consensus        80 ~~L~Ls~N~l~~l----~~~~-~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  154 (290)
T 1p9a_G           80 GTLDLSHNQLQSL----PLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS  154 (290)
T ss_dssp             CEEECCSSCCSSC----CCCT-TTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CEEECCCCcCCcC----chhh-ccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEE
Confidence            7777766655432    2222 36677777777777777655 5567777777777777777766666667777777777


Q ss_pred             ccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCccc
Q 036258          210 LGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELK  272 (331)
Q Consensus       210 l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~  272 (331)
                      +++|.++.++.       ..+..+++|++|++++|.+. .+|..+.... .++.+++++|.+.
T Consensus       155 L~~N~l~~l~~-------~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~-~L~~l~L~~Np~~  208 (290)
T 1p9a_G          155 LANNNLTELPA-------GLLNGLENLDTLLLQENSLY-TIPKGFFGSH-LLPFAFLHGNPWL  208 (290)
T ss_dssp             CTTSCCSCCCT-------TTTTTCTTCCEEECCSSCCC-CCCTTTTTTC-CCSEEECCSCCBC
T ss_pred             CCCCcCCccCH-------HHhcCcCCCCEEECCCCcCC-ccChhhcccc-cCCeEEeCCCCcc
Confidence            77777765432       22566777777777777776 5555555554 6777777776654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=7.8e-24  Score=179.20  Aligned_cols=206  Identities=24%  Similarity=0.222  Sum_probs=173.5

Q ss_pred             CCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccc
Q 036258           55 SSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLV  134 (331)
Q Consensus        55 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  134 (331)
                      +++++|++++|.++ .++...|..+++|++|++++|.+.+..+..|..+++|++|++++|.++...+..+.++++|++|+
T Consensus        28 ~~l~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (276)
T 2z62_A           28 FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  106 (276)
T ss_dssp             TTCCEEECTTCCCC-EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             CCccEEECCCCccc-ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence            47999999999998 67766668999999999999999887777899999999999999999977778899999999999


Q ss_pred             cCccccccccccCCcchhcCCCCCcEEEcCCCCCCC--CcccccCCCCCceeeCcCccccccCchhccCCCCCC----EE
Q 036258          135 LGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRT--IPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLS----LL  208 (331)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~--~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~----~L  208 (331)
                      +++|....+.    ...+..+++|++|++++|.+..  +|..+..+++|++|++++|.+.+..+..+..+++|+    .|
T Consensus       107 l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L  182 (276)
T 2z62_A          107 AVETNLASLE----NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL  182 (276)
T ss_dssp             CTTSCCCCST----TCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEE
T ss_pred             CCCCCccccC----chhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceee
Confidence            9877665433    2234488999999999999985  678899999999999999999987777777777776    89


Q ss_pred             EccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCccccc
Q 036258          209 DLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGS  274 (331)
Q Consensus       209 ~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  274 (331)
                      ++++|.+..++..        .....+|++|++++|.+.+..+..+..++ +|+.|++++|.+...
T Consensus       183 ~ls~n~l~~~~~~--------~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~N~~~c~  239 (276)
T 2z62_A          183 DLSLNPMNFIQPG--------AFKEIRLKELALDTNQLKSVPDGIFDRLT-SLQKIWLHTNPWDCS  239 (276)
T ss_dssp             ECCSSCCCEECTT--------SSCSCCEEEEECCSSCCSCCCTTTTTTCC-SCCEEECCSSCBCCC
T ss_pred             ecCCCcccccCcc--------ccCCCcccEEECCCCceeecCHhHhcccc-cccEEEccCCccccc
Confidence            9999999865332        33445899999999999866555566666 999999999998853

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.92  E-value=5.6e-23  Score=185.66  Aligned_cols=246  Identities=26%  Similarity=0.326  Sum_probs=170.8

Q ss_pred             CCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccc
Q 036258           55 SSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLV  134 (331)
Q Consensus        55 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  134 (331)
                      ++|++|++++|.+. .++.    ..++|++|++++|.+.+ +| .|+.+++|++|++++|.+++ +|..+   .+|++|+
T Consensus       111 ~~L~~L~l~~n~l~-~l~~----~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~  179 (454)
T 1jl5_A          111 QSLKSLLVDNNNLK-ALSD----LPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIA  179 (454)
T ss_dssp             TTCCEEECCSSCCS-CCCS----CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEE
T ss_pred             CCCcEEECCCCccC-cccC----CCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEE
Confidence            45666666666665 4442    23799999999999985 66 59999999999999999984 55543   5999999


Q ss_pred             cCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCc
Q 036258          135 LGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNY  214 (331)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~  214 (331)
                      +++|....+    + . +..+++|++|++++|.+..+|...   ++|++|++++|.+. ..|. +..+++|++|++++|.
T Consensus       180 L~~n~l~~l----~-~-~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~  248 (454)
T 1jl5_A          180 AGNNQLEEL----P-E-LQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNL  248 (454)
T ss_dssp             CCSSCCSSC----C-C-CTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSC
T ss_pred             CcCCcCCcC----c-c-ccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCc
Confidence            987766543    3 2 348999999999999998877543   58999999999998 4453 8889999999999998


Q ss_pred             ccCccCCCc-c--------ccccccccCCCCcEEEeecccccc--cCCchhh-------------hccccccEEEeccCc
Q 036258          215 LTTRSSTTE-W--------SFLSSLTNCIYLKVLGLHSNQLSG--ILPPLIG-------------NFSDSLQQFYAYDCE  270 (331)
Q Consensus       215 l~~~~~~~~-~--------~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~~~-------------~~~~~L~~L~l~~~~  270 (331)
                      +..++.... .        .+...-...++|++|++++|.+.+  ..|..+.             ..+++++.|++++|+
T Consensus       249 l~~l~~~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~  328 (454)
T 1jl5_A          249 LKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNK  328 (454)
T ss_dssp             CSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSC
T ss_pred             CCcccccccccCEEECCCCcccccCcccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCc
Confidence            886532110 0        000000112456666666666554  2221111             112356666666666


Q ss_pred             ccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEeccCCeeee--cCCccccCC
Q 036258          271 LKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQG--SIPSDLCHW  330 (331)
Q Consensus       271 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~--~~p~~~~~~  330 (331)
                      +.+ +|..   +++|+.|++++|.++ .+|.   .+++|++|++++|++++  .+|+++.++
T Consensus       329 l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L  382 (454)
T 1jl5_A          329 LIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDL  382 (454)
T ss_dssp             CSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEE
T ss_pred             ccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhh
Confidence            663 4433   467788888888887 5665   36789999999999987  788777543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=6.7e-23  Score=172.84  Aligned_cols=203  Identities=26%  Similarity=0.326  Sum_probs=157.1

Q ss_pred             CCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccccCccccccccccCCcchhcCCCCC
Q 036258           79 LPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNL  158 (331)
Q Consensus        79 ~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L  158 (331)
                      ....+.++++++.++ .+|..+.  +++++|++++|.++...+..|..+++|++|++++|...    .++..++..+++|
T Consensus        15 ~~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~----~i~~~~~~~l~~L   87 (270)
T 2o6q_A           15 NNNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ----TLPAGIFKELKNL   87 (270)
T ss_dssp             ETTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS----CCCTTTTSSCTTC
T ss_pred             CCCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC----eeChhhhcCCCCC
Confidence            356789999999887 5665553  68999999999998666678888999999999776654    4455555578889


Q ss_pred             cEEEcCCCCCCCCc-ccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCc
Q 036258          159 KWLALGMNKLRTIP-NSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLK  237 (331)
Q Consensus       159 ~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~  237 (331)
                      ++|++++|.+..++ ..+..+++|++|++++|.+....+..|..+++|++|++++|.+..++.       ..+..+++|+
T Consensus        88 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-------~~~~~l~~L~  160 (270)
T 2o6q_A           88 ETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK-------GVFDKLTSLK  160 (270)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-------TTTTTCTTCC
T ss_pred             CEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCH-------hHccCCcccc
Confidence            99999888888766 456778888888888888887777778888888888888888876432       2367788888


Q ss_pred             EEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCc
Q 036258          238 VLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLN  296 (331)
Q Consensus       238 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~  296 (331)
                      +|++++|.+.+..+..+..++ +|++|++++|.+++..+..+..+++|+.|++++|++.
T Consensus       161 ~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          161 ELRLYNNQLKRVPEGAFDKLT-ELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             EEECCSSCCSCCCTTTTTTCT-TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             eeEecCCcCcEeChhHhccCC-CcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence            888888888765555566555 7888888888887555556777888888888888876

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.91  E-value=6.9e-24  Score=179.09  Aligned_cols=224  Identities=21%  Similarity=0.289  Sum_probs=134.0

Q ss_pred             ccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccccC
Q 036258           57 LKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLG  136 (331)
Q Consensus        57 L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  136 (331)
                      +..+.+.++.+.+....   ..+++|+.|++++|.+.. . ..+..+++|++|++++|.+.+ + ..+..+++|++|++ 
T Consensus        21 l~~l~l~~~~~~~~~~~---~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L-   92 (272)
T 3rfs_A           21 TIKANLKKKSVTDAVTQ---NELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLIL-   92 (272)
T ss_dssp             HHHHHHTCSCTTSEECH---HHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEEC-
T ss_pred             HHHHHhcCccccccccc---ccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEEC-
Confidence            44455556655532222   457888888888887763 2 347778888888888887763 1 24444455555555 


Q ss_pred             ccccccccccCCcchhcCCCCCcEEEcCCCCCCCCc-ccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcc
Q 036258          137 HKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIP-NSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYL  215 (331)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l  215 (331)
                                                 ++|.++.++ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus        93 ---------------------------~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  145 (272)
T 3rfs_A           93 ---------------------------TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQL  145 (272)
T ss_dssp             ---------------------------TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             ---------------------------CCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCcc
Confidence                                       444444333 2345555555555555555555445555556666666666655


Q ss_pred             cCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCC
Q 036258          216 TTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDL  295 (331)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l  295 (331)
                      ...+       +..+..+++|++|++++|.+.+..+..+..++ +|++|++++|.+.+..+..+..+++|+.|++++|++
T Consensus       146 ~~~~-------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  217 (272)
T 3rfs_A          146 QSLP-------KGVFDKLTNLTELDLSYNQLQSLPEGVFDKLT-QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW  217 (272)
T ss_dssp             CCCC-------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CccC-------HHHhccCccCCEEECCCCCcCccCHHHhcCCc-cCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc
Confidence            5432       12245556666666666666544444444444 666666666666655555666777777777777766


Q ss_pred             cccCCcCccCCCCCCeEeccCCeeeecCCccccCC
Q 036258          296 NGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDLCHW  330 (331)
Q Consensus       296 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~  330 (331)
                      .+       .++.|+.+++..|.++|.+|.+++++
T Consensus       218 ~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~  245 (272)
T 3rfs_A          218 DC-------TCPGIRYLSEWINKHSGVVRNSAGSV  245 (272)
T ss_dssp             CC-------CTTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred             cc-------cCcHHHHHHHHHHhCCCcccCccccc
Confidence            52       34567777777777777777766654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.91  E-value=4.4e-27  Score=213.59  Aligned_cols=217  Identities=20%  Similarity=0.215  Sum_probs=108.9

Q ss_pred             cCCCCCcEEEccCCcccccCCccC-----cCCCCCCEEEccCcccccc----CCccccCcccccccccCcccccccccc-
Q 036258           77 NRLPSLEQLVLRSNGFFGQIPLSL-----SKCTQLQHLWLEHNKFTGR----LPENIGNLSKLRSLVLGHKAHNSLHGH-  146 (331)
Q Consensus        77 ~~~~~L~~L~L~~n~i~~~~~~~~-----~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~-  146 (331)
                      ..+++|++|++++|.+....+..+     ...++|++|++++|.++..    ++..+..+++|++|++++|........ 
T Consensus       110 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~  189 (461)
T 1z7x_W          110 RTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRV  189 (461)
T ss_dssp             TSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHH
T ss_pred             ccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHH
Confidence            445555555555554432211111     1233455555555544432    133344456666666655443321110 


Q ss_pred             CCcchhcCCCCCcEEEcCCCCCCC-----CcccccCCCCCceeeCcCccccccC-----chhccCCCCCCEEEccCCccc
Q 036258          147 LPSTLSVSLPNLKWLALGMNKLRT-----IPNSITNASELTLLELGKNSFSGLV-----PNTFGNLRFLSLLDLGNNYLT  216 (331)
Q Consensus       147 ~~~~~~~~l~~L~~L~l~~~~l~~-----~~~~~~~l~~L~~L~l~~n~~~~~~-----~~~l~~~~~L~~L~l~~~~l~  216 (331)
                      +...+....++|++|++++|.++.     ++..+..+++|++|++++|.+.+..     +..+..+++|++|++++|.++
T Consensus       190 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~  269 (461)
T 1z7x_W          190 LCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGIT  269 (461)
T ss_dssp             HHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred             HHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence            111111235577777777777764     3555666778888888887765432     222334677778888777766


Q ss_pred             CccCCCccccccccccCCCCcEEEeecccccccCCchhhhc----cccccEEEeccCccccc----CCccccCCCCCCEE
Q 036258          217 TRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNF----SDSLQQFYAYDCELKGS----IPQEIGNLNGLIDL  288 (331)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L  288 (331)
                      ..+..   .++..+..+++|++|++++|.+.+..+..+...    .++|++|++++|.+++.    ++..+..+++|++|
T Consensus       270 ~~~~~---~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L  346 (461)
T 1z7x_W          270 AKGCG---DLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLEL  346 (461)
T ss_dssp             HHHHH---HHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEE
T ss_pred             HHHHH---HHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEE
Confidence            42110   134445566777777777776654433333222    12455555555554432    23333344444444


Q ss_pred             EccCCCCc
Q 036258          289 RLQDNDLN  296 (331)
Q Consensus       289 ~l~~n~l~  296 (331)
                      ++++|.+.
T Consensus       347 ~Ls~n~i~  354 (461)
T 1z7x_W          347 QISNNRLE  354 (461)
T ss_dssp             ECCSSBCH
T ss_pred             EccCCccc
Confidence            44444443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.91  E-value=2.1e-25  Score=196.12  Aligned_cols=243  Identities=17%  Similarity=0.142  Sum_probs=134.4

Q ss_pred             cCCCCccEEEcCCCcCccCCCh----hhhcCCC-CCcEEEccCCcccccCCccCcCC-----CCCCEEEccCccccccCC
Q 036258           52 YNISSLKMIRLSSNSLSGSLPN----DLCNRLP-SLEQLVLRSNGFFGQIPLSLSKC-----TQLQHLWLEHNKFTGRLP  121 (331)
Q Consensus        52 ~~~~~L~~L~l~~~~i~~~~~~----~~~~~~~-~L~~L~L~~n~i~~~~~~~~~~l-----~~L~~L~l~~n~~~~~~~  121 (331)
                      ...++|++|++++|.+. ..+.    ..|..++ +|++|++++|.+.+..+..+..+     ++|++|++++|.++...+
T Consensus        19 ~~~~~L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~   97 (362)
T 3goz_A           19 SIPHGVTSLDLSLNNLY-SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSS   97 (362)
T ss_dssp             TSCTTCCEEECTTSCGG-GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred             hCCCCceEEEccCCCCC-hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHH
Confidence            33344777777777776 4443    3445666 67777777777765555555443     677777777777765444


Q ss_pred             cccc----Cc-ccccccccCccccccccccCCcchhcC-CCCCcEEEcCCCCCC-----CCcccccCCC-CCceeeCcCc
Q 036258          122 ENIG----NL-SKLRSLVLGHKAHNSLHGHLPSTLSVS-LPNLKWLALGMNKLR-----TIPNSITNAS-ELTLLELGKN  189 (331)
Q Consensus       122 ~~~~----~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~-l~~L~~L~l~~~~l~-----~~~~~~~~l~-~L~~L~l~~n  189 (331)
                      ..+.    .+ ++|++|++++|.............+.. ..+|++|++++|.+.     .++..+...+ +|++|++++|
T Consensus        98 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n  177 (362)
T 3goz_A           98 DELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN  177 (362)
T ss_dssp             HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred             HHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCC
Confidence            4332    33 677777776555443322111122222 246777777777665     2233344444 6777777777


Q ss_pred             cccccCch----hccCC-CCCCEEEccCCcccCccCCCcccccccccc-CCCCcEEEeecccccccCCchhhhc---ccc
Q 036258          190 SFSGLVPN----TFGNL-RFLSLLDLGNNYLTTRSSTTEWSFLSSLTN-CIYLKVLGLHSNQLSGILPPLIGNF---SDS  260 (331)
Q Consensus       190 ~~~~~~~~----~l~~~-~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~---~~~  260 (331)
                      .+.+..+.    .+... ++|++|++++|.+...+..   .++..+.. .++|++|++++|.+.+..+..+...   .+.
T Consensus       178 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~---~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~  254 (362)
T 3goz_A          178 NLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYA---ELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKH  254 (362)
T ss_dssp             CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHH---HHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTT
T ss_pred             CCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHH---HHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCC
Confidence            66654443    23333 3677777777766642211   23334444 3467777777777664443222211   126


Q ss_pred             ccEEEeccCcccc-------cCCccccCCCCCCEEEccCCCCccc
Q 036258          261 LQQFYAYDCELKG-------SIPQEIGNLNGLIDLRLQDNDLNGT  298 (331)
Q Consensus       261 L~~L~l~~~~~~~-------~~~~~l~~l~~L~~L~l~~n~l~~~  298 (331)
                      |+.|++++|.+.+       .++..+..+++|+.|++++|.+.+.
T Consensus       255 L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          255 LQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             CSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             ccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            7777777766332       2233455666666777777776643

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.90  E-value=3.9e-26  Score=207.36  Aligned_cols=269  Identities=20%  Similarity=0.173  Sum_probs=170.3

Q ss_pred             hhcCCCCccEEEcCCCcCccCCCh----hhhcCCCCCcEEEccCCccccc----CCccCcCCCCCCEEEccCccccccCC
Q 036258           50 CFYNISSLKMIRLSSNSLSGSLPN----DLCNRLPSLEQLVLRSNGFFGQ----IPLSLSKCTQLQHLWLEHNKFTGRLP  121 (331)
Q Consensus        50 ~~~~~~~L~~L~l~~~~i~~~~~~----~~~~~~~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~  121 (331)
                      .|..+++|++|++++|.+.+..+.    .++...++|++|++++|.+...    ++..+..+++|++|++++|.+....+
T Consensus       108 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~  187 (461)
T 1z7x_W          108 TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGV  187 (461)
T ss_dssp             HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred             HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHH
Confidence            578889999999999988643232    2333466899999999988753    24556677899999999988764433


Q ss_pred             cccc-----CcccccccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCC------cccccCCCCCceeeCcCcc
Q 036258          122 ENIG-----NLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTI------PNSITNASELTLLELGKNS  190 (331)
Q Consensus       122 ~~~~-----~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~------~~~~~~l~~L~~L~l~~n~  190 (331)
                      ..+.     ..++|++|++++|.............+..+++|++|++++|.+...      +..+..+++|++|++++|.
T Consensus       188 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~  267 (461)
T 1z7x_W          188 RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG  267 (461)
T ss_dssp             HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred             HHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC
Confidence            3332     2558888888766554322111122233677888888888876521      1222346788888888887


Q ss_pred             cccc----CchhccCCCCCCEEEccCCcccCccCCCcccccccc-ccCCCCcEEEeeccccccc----CCchhhhccccc
Q 036258          191 FSGL----VPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSL-TNCIYLKVLGLHSNQLSGI----LPPLIGNFSDSL  261 (331)
Q Consensus       191 ~~~~----~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~~L  261 (331)
                      +...    .+..+..+++|++|++++|.+...+..   .+...+ ...++|++|++++|.+++.    ++..+...+ +|
T Consensus       268 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~---~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~-~L  343 (461)
T 1z7x_W          268 ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR---LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNR-FL  343 (461)
T ss_dssp             CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH---HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCS-SC
T ss_pred             CCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH---HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCC-Cc
Confidence            7643    345566677788888888776542110   111111 1235777777777777654    233333334 77


Q ss_pred             cEEEeccCcccccCCccccC-----CCCCCEEEccCCCCcc----cCCcCccCCCCCCeEeccCCeeeec
Q 036258          262 QQFYAYDCELKGSIPQEIGN-----LNGLIDLRLQDNDLNG----TIPTTVGRLQQLQGLFLFGNNLQGS  322 (331)
Q Consensus       262 ~~L~l~~~~~~~~~~~~l~~-----l~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~~~~~  322 (331)
                      ++|++++|.+.+..+..+..     .++|+.|++++|.+++    .++..+..+++|++|++++|++++.
T Consensus       344 ~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~  413 (461)
T 1z7x_W          344 LELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA  413 (461)
T ss_dssp             CEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred             cEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence            77777777776544443332     5677777777777774    5566666677777777777777643

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.90  E-value=1.6e-22  Score=172.08  Aligned_cols=203  Identities=22%  Similarity=0.214  Sum_probs=170.1

Q ss_pred             hcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccccCccccccccccCCcchhcCC
Q 036258           76 CNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSL  155 (331)
Q Consensus        76 ~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l  155 (331)
                      +..+++++.++++++.++ .+|..+.  +++++|++++|.+++..+..+..+++|++|++++|.+..+...      ..+
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------~~l   76 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD------GTL   76 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC------SCC
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC------CCC
Confidence            367899999999999987 5665553  6899999999999977788899999999999988777654321      378


Q ss_pred             CCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCC
Q 036258          156 PNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIY  235 (331)
Q Consensus       156 ~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~  235 (331)
                      ++|++|++++|.+..+|..+..+++|++|++++|++....+..|..+++|++|++++|.+..++.       ..+..+++
T Consensus        77 ~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~-------~~~~~l~~  149 (290)
T 1p9a_G           77 PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP-------GLLTPTPK  149 (290)
T ss_dssp             TTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT-------TTTTTCTT
T ss_pred             CcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccCh-------hhcccccC
Confidence            99999999999999999888899999999999999998877889999999999999999887533       34678899


Q ss_pred             CcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCc
Q 036258          236 LKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLN  296 (331)
Q Consensus       236 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~  296 (331)
                      |++|++++|++.+..+..+..+. +|++|++++|.++ .+|..+..+++|+.|++.+|++.
T Consensus       150 L~~L~L~~N~l~~l~~~~~~~l~-~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          150 LEKLSLANNNLTELPAGLLNGLE-NLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             CCEEECTTSCCSCCCTTTTTTCT-TCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             CCEEECCCCcCCccCHHHhcCcC-CCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence            99999999998854444555555 8999999999888 67778888888899999988876

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=4e-23  Score=174.36  Aligned_cols=210  Identities=23%  Similarity=0.318  Sum_probs=152.9

Q ss_pred             hhcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCccc
Q 036258           50 CFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSK  129 (331)
Q Consensus        50 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~  129 (331)
                      ....+++|+.|+++++.+. .++.  +..+++|++|++++|.+.+.  ..+..+++|++|++++|.+++..+..+..+++
T Consensus        36 ~~~~l~~L~~L~l~~~~i~-~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  110 (272)
T 3rfs_A           36 TQNELNSIDQIIANNSDIK-SVQG--IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTN  110 (272)
T ss_dssp             CHHHHTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred             ccccccceeeeeeCCCCcc-cccc--cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcC
Confidence            3667899999999999987 6654  36799999999999998753  47889999999999999999766667788888


Q ss_pred             ccccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCc-ccccCCCCCceeeCcCccccccCchhccCCCCCCEE
Q 036258          130 LRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIP-NSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLL  208 (331)
Q Consensus       130 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L  208 (331)
                      |++|++++|...    .++...+..+++|++|++++|.++.++ ..+..+++|+.|++++|.+.+..+..+..+++|++|
T Consensus       111 L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  186 (272)
T 3rfs_A          111 LKELVLVENQLQ----SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDL  186 (272)
T ss_dssp             CCEEECTTSCCC----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCEEECCCCcCC----ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEE
Confidence            888888666554    333444446777888888887777655 345677777777777777776666666777777777


Q ss_pred             EccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCC
Q 036258          209 DLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLN  283 (331)
Q Consensus       209 ~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~  283 (331)
                      ++++|.+...+       +..+..+++|++|++++|.+.+..|        .++.+++..|.+.+.+|.+++.+.
T Consensus       187 ~L~~N~l~~~~-------~~~~~~l~~L~~L~l~~N~~~~~~~--------~l~~l~~~~n~~~g~ip~~~~~~~  246 (272)
T 3rfs_A          187 RLYQNQLKSVP-------DGVFDRLTSLQYIWLHDNPWDCTCP--------GIRYLSEWINKHSGVVRNSAGSVA  246 (272)
T ss_dssp             ECCSSCCSCCC-------TTTTTTCTTCCEEECCSSCBCCCTT--------TTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred             ECCCCcCCccC-------HHHHhCCcCCCEEEccCCCccccCc--------HHHHHHHHHHhCCCcccCcccccC
Confidence            77777776532       2335667777777777776653322        456666666666666666665544

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.90  E-value=3.9e-22  Score=185.75  Aligned_cols=228  Identities=25%  Similarity=0.296  Sum_probs=174.2

Q ss_pred             CCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccc
Q 036258           55 SSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLV  134 (331)
Q Consensus        55 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  134 (331)
                      .++++|+++++.++ .+|..+   .++|++|++++|.++ .+|.   .+++|++|++++|.++ .+|.   .+++|++|+
T Consensus        40 ~~l~~L~ls~n~L~-~lp~~l---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~  107 (622)
T 3g06_A           40 NGNAVLNVGESGLT-TLPDCL---PAHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELS  107 (622)
T ss_dssp             HCCCEEECCSSCCS-CCCSCC---CTTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEE
T ss_pred             CCCcEEEecCCCcC-ccChhh---CCCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEE
Confidence            46899999999998 999876   389999999999998 4554   5789999999999998 4565   678999999


Q ss_pred             cCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCc
Q 036258          135 LGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNY  214 (331)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~  214 (331)
                      +++|.+..+.    .    .+++|++|++++|.++.+|..   +++|++|++++|.+.+. |.   .+.+|+.|++++|.
T Consensus       108 Ls~N~l~~l~----~----~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~  172 (622)
T 3g06_A          108 IFSNPLTHLP----A----LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQ  172 (622)
T ss_dssp             ECSCCCCCCC----C----CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSC
T ss_pred             CcCCcCCCCC----C----CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCC
Confidence            9877766443    2    568999999999999988864   48999999999998854 32   35789999999999


Q ss_pred             ccCccCCCccccccccccCCCCcEEEeecccccccCCchhh----------------hccccccEEEeccCcccccCCcc
Q 036258          215 LTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIG----------------NFSDSLQQFYAYDCELKGSIPQE  278 (331)
Q Consensus       215 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~----------------~~~~~L~~L~l~~~~~~~~~~~~  278 (331)
                      ++.++           ..+++|+.|++++|.+.+ +|..+.                ...++|+.|++++|.+++ +|  
T Consensus       173 l~~l~-----------~~~~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-lp--  237 (622)
T 3g06_A          173 LTSLP-----------MLPSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LP--  237 (622)
T ss_dssp             CSCCC-----------CCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CC--
T ss_pred             CCCCc-----------ccCCCCcEEECCCCCCCC-CCCccchhhEEECcCCcccccCCCCCCCCEEEccCCccCc-CC--
Confidence            98753           224556666666666552 222111                011367777888777763 55  


Q ss_pred             ccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEeccCCeeeecCCccccCC
Q 036258          279 IGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDLCHW  330 (331)
Q Consensus       279 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~  330 (331)
                       ..+++|+.|++++|.++ .+|.   .+++|+.|++++|.++ .+|+.+.++
T Consensus       238 -~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l  283 (622)
T 3g06_A          238 -VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHL  283 (622)
T ss_dssp             -CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGS
T ss_pred             -CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhc
Confidence             45577888888888888 5665   5678999999999998 888877665

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.90  E-value=2.2e-24  Score=187.73  Aligned_cols=255  Identities=18%  Similarity=0.169  Sum_probs=199.4

Q ss_pred             CCccEEEcCCCcCccCCChhhhcCC--CCCcEEEccCCcccccCCccCcCCCCCCEEEccCcccccc-CCccccCccccc
Q 036258           55 SSLKMIRLSSNSLSGSLPNDLCNRL--PSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGR-LPENIGNLSKLR  131 (331)
Q Consensus        55 ~~L~~L~l~~~~i~~~~~~~~~~~~--~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~  131 (331)
                      ..++.++++++.+.    +..+..+  ++++.|++++|.+.+..+. +..+++|++|++++|.++.. ++..+..+++|+
T Consensus        47 ~~~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~  121 (336)
T 2ast_B           47 SLWQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ  121 (336)
T ss_dssp             TTSSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred             hhheeeccccccCC----HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence            45889999998775    2333556  8999999999998866554 56799999999999998754 777888999999


Q ss_pred             ccccCccccccccccCCcchhcCCCCCcEEEcCCC-CCC--CCcccccCCCCCceeeCcCc-ccccc-CchhccCCC-CC
Q 036258          132 SLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMN-KLR--TIPNSITNASELTLLELGKN-SFSGL-VPNTFGNLR-FL  205 (331)
Q Consensus       132 ~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~--~~~~~~~~l~~L~~L~l~~n-~~~~~-~~~~l~~~~-~L  205 (331)
                      +|+++++..   .+..+..+. .+++|++|++++| .++  .++..+..+++|++|++++| .+.+. .+..+..++ +|
T Consensus       122 ~L~L~~~~l---~~~~~~~l~-~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L  197 (336)
T 2ast_B          122 NLSLEGLRL---SDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI  197 (336)
T ss_dssp             EEECTTCBC---CHHHHHHHT-TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred             EEeCcCccc---CHHHHHHHh-cCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCC
Confidence            999976643   333334343 6899999999999 676  36677888999999999999 88753 466678889 99


Q ss_pred             CEEEccCCc--ccCccCCCccccccccccCCCCcEEEeeccc-ccccCCchhhhccccccEEEeccCc-ccccCCccccC
Q 036258          206 SLLDLGNNY--LTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQ-LSGILPPLIGNFSDSLQQFYAYDCE-LKGSIPQEIGN  281 (331)
Q Consensus       206 ~~L~l~~~~--l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~  281 (331)
                      ++|++++|.  ++..      .++..+..+++|++|++++|. +++..+..+..++ +|++|++++|. +.......+..
T Consensus       198 ~~L~l~~~~~~~~~~------~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~l~~  270 (336)
T 2ast_B          198 TQLNLSGYRKNLQKS------DLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN-YLQHLSLSRCYDIIPETLLELGE  270 (336)
T ss_dssp             CEEECCSCGGGSCHH------HHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCT-TCCEEECTTCTTCCGGGGGGGGG
T ss_pred             CEEEeCCCcccCCHH------HHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCC-CCCEeeCCCCCCCCHHHHHHHhc
Confidence            999999994  4321      455667889999999999999 7777777888776 99999999995 44333346888


Q ss_pred             CCCCCEEEccCCCCcccCCcCccCCC-CCCeEeccCCeeeecCCccccC
Q 036258          282 LNGLIDLRLQDNDLNGTIPTTVGRLQ-QLQGLFLFGNNLQGSIPSDLCH  329 (331)
Q Consensus       282 l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~l~~n~~~~~~p~~~~~  329 (331)
                      +++|+.|++++| +..   +.+..+. .++.|++++|.+++..|..+.+
T Consensus       271 ~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~  315 (336)
T 2ast_B          271 IPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPTIGN  315 (336)
T ss_dssp             CTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred             CCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCcccc
Confidence            999999999999 442   2344443 4778889999999999987764

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.90  E-value=9.7e-26  Score=200.13  Aligned_cols=89  Identities=24%  Similarity=0.235  Sum_probs=43.0

Q ss_pred             hcCCCCccEEEcCCCcCccCCChh---hhcCCCCCcEEEccCCcc---cccCCccC-------cCCCCCCEEEccCcccc
Q 036258           51 FYNISSLKMIRLSSNSLSGSLPND---LCNRLPSLEQLVLRSNGF---FGQIPLSL-------SKCTQLQHLWLEHNKFT  117 (331)
Q Consensus        51 ~~~~~~L~~L~l~~~~i~~~~~~~---~~~~~~~L~~L~L~~n~i---~~~~~~~~-------~~l~~L~~L~l~~n~~~  117 (331)
                      +..+++|++|++++|.+.+..+..   .+..+++|++|+|++|.+   .+..|..+       ..+++|++|++++|.+.
T Consensus        28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~  107 (386)
T 2ca6_A           28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG  107 (386)
T ss_dssp             HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred             HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence            444555666666666554321111   124456666666665422   22233222       45556666666665555


Q ss_pred             c----cCCccccCcccccccccCccc
Q 036258          118 G----RLPENIGNLSKLRSLVLGHKA  139 (331)
Q Consensus       118 ~----~~~~~~~~l~~L~~L~l~~~~  139 (331)
                      .    .++..+..+++|++|++++|.
T Consensus       108 ~~~~~~l~~~l~~~~~L~~L~L~~n~  133 (386)
T 2ca6_A          108 PTAQEPLIDFLSKHTPLEHLYLHNNG  133 (386)
T ss_dssp             TTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred             HHHHHHHHHHHHhCCCCCEEECcCCC
Confidence            3    233444455555555554443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.89  E-value=5.1e-23  Score=170.44  Aligned_cols=206  Identities=17%  Similarity=0.254  Sum_probs=124.0

Q ss_pred             CccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCcc-ccccCCccccCcccccccccCc-ccccccc
Q 036258           67 LSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNK-FTGRLPENIGNLSKLRSLVLGH-KAHNSLH  144 (331)
Q Consensus        67 i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~  144 (331)
                      ++ .+|. +   .++|++|++++|.+++..+..|..+++|++|++++|. ++...+..|.++++|++|++++ |....  
T Consensus        23 l~-~ip~-~---~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~--   95 (239)
T 2xwt_C           23 IQ-RIPS-L---PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY--   95 (239)
T ss_dssp             CS-SCCC-C---CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE--
T ss_pred             cc-ccCC-C---CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE--
Confidence            54 6665 3   3478888888888876666677788888888888885 6644444566666666666643 33321  


Q ss_pred             ccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCC---EEEccCC-cccCccC
Q 036258          145 GHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLS---LLDLGNN-YLTTRSS  220 (331)
Q Consensus       145 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~---~L~l~~~-~l~~~~~  220 (331)
                        ++...+..+++|++|++++|.+..+|.                         +..+++|+   +|++++| .+..++.
T Consensus        96 --i~~~~f~~l~~L~~L~l~~n~l~~lp~-------------------------~~~l~~L~~L~~L~l~~N~~l~~i~~  148 (239)
T 2xwt_C           96 --IDPDALKELPLLKFLGIFNTGLKMFPD-------------------------LTKVYSTDIFFILEITDNPYMTSIPV  148 (239)
T ss_dssp             --ECTTSEECCTTCCEEEEEEECCCSCCC-------------------------CTTCCBCCSEEEEEEESCTTCCEECT
T ss_pred             --cCHHHhCCCCCCCEEeCCCCCCccccc-------------------------cccccccccccEEECCCCcchhhcCc
Confidence              222222344444444444444444333                         44444444   5555555 5544321


Q ss_pred             CCccccccccccCCCCc-EEEeecccccccCCchhhhccccccEEEeccCc-ccccCCccccCC-CCCCEEEccCCCCcc
Q 036258          221 TTEWSFLSSLTNCIYLK-VLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCE-LKGSIPQEIGNL-NGLIDLRLQDNDLNG  297 (331)
Q Consensus       221 ~~~~~~~~~~~~~~~L~-~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~l-~~L~~L~l~~n~l~~  297 (331)
                             ..+..+++|+ +|++++|.+. .+|...... ++|+.|++++|. +.+..+..+.++ ++|+.|++++|.++ 
T Consensus       149 -------~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-  218 (239)
T 2xwt_C          149 -------NAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-  218 (239)
T ss_dssp             -------TTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-
T ss_pred             -------ccccchhcceeEEEcCCCCCc-ccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-
Confidence                   2255566666 6666666665 333333333 377777777774 765556677778 88888888888888 


Q ss_pred             cCCcCccCCCCCCeEeccCCe
Q 036258          298 TIPTTVGRLQQLQGLFLFGNN  318 (331)
Q Consensus       298 ~~~~~l~~l~~L~~L~l~~n~  318 (331)
                      .+|..  .+++|+.|+++++.
T Consensus       219 ~l~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          219 ALPSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             CCCCT--TCTTCSEEECTTC-
T ss_pred             cCChh--HhccCceeeccCcc
Confidence            55543  56778888887764

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.89  E-value=3.7e-24  Score=188.24  Aligned_cols=260  Identities=15%  Similarity=0.147  Sum_probs=194.9

Q ss_pred             EEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCC----ccCcCCC-CCCEEEccCccccccCCccccCc-----c
Q 036258           59 MIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIP----LSLSKCT-QLQHLWLEHNKFTGRLPENIGNL-----S  128 (331)
Q Consensus        59 ~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~----~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l-----~  128 (331)
                      .++++++.+++.+|... ...++|++|++++|.+....+    ..+..++ +|++|++++|.++...+..+..+     +
T Consensus         2 ~~~ls~n~~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~   80 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFT-SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA   80 (362)
T ss_dssp             EEECCCCTTCCHHHHHH-TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred             ccccccccchHHHHHHH-hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence            46788999986666544 666679999999999986655    6778888 99999999999987767777665     8


Q ss_pred             cccccccCccccccccccCCcchhcCC-CCCcEEEcCCCCCCCCc-c----cccC-CCCCceeeCcCccccccCc----h
Q 036258          129 KLRSLVLGHKAHNSLHGHLPSTLSVSL-PNLKWLALGMNKLRTIP-N----SITN-ASELTLLELGKNSFSGLVP----N  197 (331)
Q Consensus       129 ~L~~L~l~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~l~~~~-~----~~~~-l~~L~~L~l~~n~~~~~~~----~  197 (331)
                      +|++|++++|.............+..+ ++|++|++++|.++..+ .    .+.. .++|++|++++|.+.+...    .
T Consensus        81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  160 (362)
T 3goz_A           81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ  160 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred             CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence            999999987776543322222223344 89999999999988544 2    2344 3699999999999985433    4


Q ss_pred             hccCCC-CCCEEEccCCcccCccCCCccccccccccC-CCCcEEEeeccccccc----CCchhhhccccccEEEeccCcc
Q 036258          198 TFGNLR-FLSLLDLGNNYLTTRSSTTEWSFLSSLTNC-IYLKVLGLHSNQLSGI----LPPLIGNFSDSLQQFYAYDCEL  271 (331)
Q Consensus       198 ~l~~~~-~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~~~~~----~~~~~~~~~~~L~~L~l~~~~~  271 (331)
                      .+..++ +|++|++++|.++.....   .+...+..+ ++|++|++++|.+.+.    ++..+...+++|++|++++|.+
T Consensus       161 ~l~~~~~~L~~L~Ls~n~l~~~~~~---~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l  237 (362)
T 3goz_A          161 ILAAIPANVNSLNLRGNNLASKNCA---ELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCL  237 (362)
T ss_dssp             HHHTSCTTCCEEECTTSCGGGSCHH---HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCC
T ss_pred             HHhcCCccccEeeecCCCCchhhHH---HHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCC
Confidence            445555 899999999998864321   233345566 5999999999999863    4445555445999999999999


Q ss_pred             cccCC----ccccCCCCCCEEEccCCCCcc-------cCCcCccCCCCCCeEeccCCeeeec
Q 036258          272 KGSIP----QEIGNLNGLIDLRLQDNDLNG-------TIPTTVGRLQQLQGLFLFGNNLQGS  322 (331)
Q Consensus       272 ~~~~~----~~l~~l~~L~~L~l~~n~l~~-------~~~~~l~~l~~L~~L~l~~n~~~~~  322 (331)
                      .+..+    ..+..+++|+.|++++|.+.+       .++..+..+++|+.|++++|.+.+.
T Consensus       238 ~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          238 HGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             CCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             CcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            86544    445778999999999998442       3445677889999999999998865

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.88  E-value=2.2e-24  Score=191.35  Aligned_cols=262  Identities=22%  Similarity=0.266  Sum_probs=194.7

Q ss_pred             ccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCccccc----CCccCcCCCCCCEEEccCccc---cccCCccc-----
Q 036258           57 LKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQ----IPLSLSKCTQLQHLWLEHNKF---TGRLPENI-----  124 (331)
Q Consensus        57 L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~l~~n~~---~~~~~~~~-----  124 (331)
                      |+...++...+. .++..+ ..+++|++|++++|.+...    ++..+..+++|++|++++|.+   ++.+|..+     
T Consensus        11 L~~~~l~~~~~~-~l~~~l-~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~   88 (386)
T 2ca6_A           11 LKLDAITTEDEK-SVFAVL-LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQ   88 (386)
T ss_dssp             CEESSCCSHHHH-TTSHHH-HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHH
T ss_pred             cccCCCCHHHHH-HHHHHH-hcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHH
Confidence            333333333443 566655 6789999999999998754    334577899999999999744   34445444     


Q ss_pred             --cCcccccccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCC-----CcccccCC---------CCCceeeCcC
Q 036258          125 --GNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRT-----IPNSITNA---------SELTLLELGK  188 (331)
Q Consensus       125 --~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-----~~~~~~~l---------~~L~~L~l~~  188 (331)
                        ..+++|++|++++|.+...........+..+++|++|++++|.+..     ++..+..+         ++|++|++++
T Consensus        89 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~  168 (386)
T 2ca6_A           89 ALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR  168 (386)
T ss_dssp             HHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCS
T ss_pred             HHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCC
Confidence              6889999999987766543222122233478999999999999862     33344444         8999999999


Q ss_pred             ccccc-cCc---hhccCCCCCCEEEccCCcccCccCCCcccccc-ccccCCCCcEEEeeccccc----ccCCchhhhccc
Q 036258          189 NSFSG-LVP---NTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLS-SLTNCIYLKVLGLHSNQLS----GILPPLIGNFSD  259 (331)
Q Consensus       189 n~~~~-~~~---~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~-~~~~~~~L~~L~l~~n~~~----~~~~~~~~~~~~  259 (331)
                      |.+.. ..+   ..+..+++|++|++++|.+...+..   .+.. .+..+++|++|+|++|.++    ..+|..+..++ 
T Consensus       169 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~---~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~-  244 (386)
T 2ca6_A          169 NRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIE---HLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP-  244 (386)
T ss_dssp             SCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHH---HHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCT-
T ss_pred             CCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHH---HHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCC-
Confidence            99873 333   4667888999999999988732100   1222 6888999999999999996    56777777766 


Q ss_pred             cccEEEeccCccccc----CCcccc--CCCCCCEEEccCCCCcc----cCCcCc-cCCCCCCeEeccCCeeeecCC
Q 036258          260 SLQQFYAYDCELKGS----IPQEIG--NLNGLIDLRLQDNDLNG----TIPTTV-GRLQQLQGLFLFGNNLQGSIP  324 (331)
Q Consensus       260 ~L~~L~l~~~~~~~~----~~~~l~--~l~~L~~L~l~~n~l~~----~~~~~l-~~l~~L~~L~l~~n~~~~~~p  324 (331)
                      +|++|++++|.+++.    ++..+.  .+++|+.|++++|.+++    .+|..+ ..+++|++|++++|++++..|
T Consensus       245 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          245 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             TCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             CcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            999999999999865    456663  48999999999999996    377766 568999999999999996653

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.88  E-value=8.1e-23  Score=175.84  Aligned_cols=226  Identities=16%  Similarity=0.118  Sum_probs=174.4

Q ss_pred             CCCCccEEEcCCCcCccC----CChhhhcCCCCCcEEEccCCcccccCCccC--cCCCCCCEEEccCccccccCC----c
Q 036258           53 NISSLKMIRLSSNSLSGS----LPNDLCNRLPSLEQLVLRSNGFFGQIPLSL--SKCTQLQHLWLEHNKFTGRLP----E  122 (331)
Q Consensus        53 ~~~~L~~L~l~~~~i~~~----~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~----~  122 (331)
                      +...++.+.+.++.+...    +...  ..+++|++|++++|.+.+..|..+  ..+++|++|++++|.+++..+    .
T Consensus        62 ~~~~l~~l~l~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~  139 (310)
T 4glp_A           62 KALRVRRLTVGAAQVPAQLLVGALRV--LAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAEL  139 (310)
T ss_dssp             SSCCCCEEEECSCCCBHHHHHHHHHH--HHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHH
T ss_pred             hhcceeEEEEeCCcCCHHHHHHHHHh--cccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHH
Confidence            334578899988877521    1121  135779999999999998888888  899999999999999986444    3


Q ss_pred             cccCcccccccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCC---Cc--ccccCCCCCceeeCcCccccccCc-
Q 036258          123 NIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRT---IP--NSITNASELTLLELGKNSFSGLVP-  196 (331)
Q Consensus       123 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~---~~--~~~~~l~~L~~L~l~~n~~~~~~~-  196 (331)
                      .+..+++|++|++++|...    .++...+..+++|++|++++|.+..   ++  ..+..+++|++|++++|.+....+ 
T Consensus       140 ~~~~~~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~  215 (310)
T 4glp_A          140 QQWLKPGLKVLSIAQAHSP----AFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGV  215 (310)
T ss_dssp             HTTBCSCCCEEEEECCSSC----CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHH
T ss_pred             HhhhccCCCEEEeeCCCcc----hhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHH
Confidence            4567899999999776664    3334444589999999999998752   22  334678999999999999963322 


Q ss_pred             -h-hccCCCCCCEEEccCCcccCccCCCccccccccccC---CCCcEEEeecccccccCCchhhhccccccEEEeccCcc
Q 036258          197 -N-TFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNC---IYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCEL  271 (331)
Q Consensus       197 -~-~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~---~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~  271 (331)
                       . .+..+++|++|++++|.+...       .|..+..+   ++|++|++++|.+. .+|..+.   ++|+.|++++|++
T Consensus       216 ~~~l~~~l~~L~~L~Ls~N~l~~~-------~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~---~~L~~L~Ls~N~l  284 (310)
T 4glp_A          216 CAALAAAGVQPHSLDLSHNSLRAT-------VNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP---AKLRVLDLSSNRL  284 (310)
T ss_dssp             HHHHHHHTCCCSSEECTTSCCCCC-------CCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC---SCCSCEECCSCCC
T ss_pred             HHHHHhcCCCCCEEECCCCCCCcc-------chhhHHhccCcCcCCEEECCCCCCC-chhhhhc---CCCCEEECCCCcC
Confidence             1 356789999999999999874       23334444   79999999999998 6677664   4999999999999


Q ss_pred             cccCCccccCCCCCCEEEccCCCCcc
Q 036258          272 KGSIPQEIGNLNGLIDLRLQDNDLNG  297 (331)
Q Consensus       272 ~~~~~~~l~~l~~L~~L~l~~n~l~~  297 (331)
                      ++ +|. +..+++|+.|++++|++++
T Consensus       285 ~~-~~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          285 NR-APQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CS-CCC-TTSCCCCSCEECSSTTTSC
T ss_pred             CC-Cch-hhhCCCccEEECcCCCCCC
Confidence            84 344 6888999999999999973

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.88  E-value=7.9e-22  Score=169.39  Aligned_cols=195  Identities=22%  Similarity=0.324  Sum_probs=150.6

Q ss_pred             hcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccc
Q 036258           51 FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKL  130 (331)
Q Consensus        51 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L  130 (331)
                      +.++++|++|+++++.+. .++.  +..+++|++|++++|.+.+..+  +..+++|++|++++|.+++ + ..+..+++|
T Consensus        37 ~~~l~~L~~L~l~~~~i~-~l~~--~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L  109 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVT-TIEG--VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-V-SAIAGLQSI  109 (308)
T ss_dssp             HHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-C-GGGTTCTTC
T ss_pred             HHHcCCcCEEEeeCCCcc-Cchh--hhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-c-hhhcCCCCC
Confidence            567789999999999998 6763  4779999999999999875433  8899999999999999874 3 367888889


Q ss_pred             cccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEc
Q 036258          131 RSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDL  210 (331)
Q Consensus       131 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l  210 (331)
                      ++|++++|....+.    .  +..+++|++|++++|.+..++. +..+++|+.|++++|.+.+..+  +..+++|++|++
T Consensus       110 ~~L~l~~n~l~~~~----~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l  180 (308)
T 1h6u_A          110 KTLDLTSTQITDVT----P--LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKA  180 (308)
T ss_dssp             CEEECTTSCCCCCG----G--GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred             CEEECCCCCCCCch----h--hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEEC
Confidence            99998777665432    1  3478888888888888887665 7778888888888888875433  778888888888


Q ss_pred             cCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccc
Q 036258          211 GNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKG  273 (331)
Q Consensus       211 ~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  273 (331)
                      ++|.+..+        + .+..+++|++|++++|.+.+..+  +..++ +|+.|++++|.+++
T Consensus       181 ~~n~l~~~--------~-~l~~l~~L~~L~L~~N~l~~~~~--l~~l~-~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          181 DDNKISDI--------S-PLASLPNLIEVHLKNNQISDVSP--LANTS-NLFIVTLTNQTITN  231 (308)
T ss_dssp             CSSCCCCC--------G-GGGGCTTCCEEECTTSCCCBCGG--GTTCT-TCCEEEEEEEEEEC
T ss_pred             CCCccCcC--------h-hhcCCCCCCEEEccCCccCcccc--ccCCC-CCCEEEccCCeeec
Confidence            88887753        1 16778888888888888874442  45554 88888888888763

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.88  E-value=2.1e-22  Score=173.32  Aligned_cols=233  Identities=21%  Similarity=0.207  Sum_probs=180.0

Q ss_pred             CCCCcEEEccCCcccccCCc---cCcCCCCCCEEEccCccccccCCccc--cCcccccccccCccccccccccCCcchhc
Q 036258           79 LPSLEQLVLRSNGFFGQIPL---SLSKCTQLQHLWLEHNKFTGRLPENI--GNLSKLRSLVLGHKAHNSLHGHLPSTLSV  153 (331)
Q Consensus        79 ~~~L~~L~L~~n~i~~~~~~---~~~~l~~L~~L~l~~n~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  153 (331)
                      ...++.+.+.++.+......   .+..+++|++|++++|.+.+..|..+  ..+++|++|++++|........++...+.
T Consensus        63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~  142 (310)
T 4glp_A           63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW  142 (310)
T ss_dssp             SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred             hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence            45678888888766421100   12235679999999999998888888  89999999999777665432212222223


Q ss_pred             CCCCCcEEEcCCCCCCCCc-ccccCCCCCceeeCcCcccccc---C-chhccCCCCCCEEEccCCcccCccCCCcccccc
Q 036258          154 SLPNLKWLALGMNKLRTIP-NSITNASELTLLELGKNSFSGL---V-PNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLS  228 (331)
Q Consensus       154 ~l~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~n~~~~~---~-~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~  228 (331)
                      .+++|++|++++|.+..++ ..+..+++|++|++++|.+.+.   . +..+..+++|++|++++|.++..+.     .+.
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~-----~~~  217 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTG-----VCA  217 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHH-----HHH
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHH-----HHH
Confidence            7899999999999998665 7888999999999999987542   1 2334678999999999999975321     111


Q ss_pred             -ccccCCCCcEEEeecccccccCCchhhhcc--ccccEEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccC
Q 036258          229 -SLTNCIYLKVLGLHSNQLSGILPPLIGNFS--DSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGR  305 (331)
Q Consensus       229 -~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~  305 (331)
                       .+..+++|++|++++|.+.+..|..+..+.  ++|++|++++|.++ .+|..+.  ++|+.|++++|.+++ +|. +..
T Consensus       218 ~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~-~~~-~~~  292 (310)
T 4glp_A          218 ALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR-APQ-PDE  292 (310)
T ss_dssp             HHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS-CCC-TTS
T ss_pred             HHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC-Cch-hhh
Confidence             246789999999999999988787776653  59999999999999 6777764  799999999999994 444 678


Q ss_pred             CCCCCeEeccCCeeee
Q 036258          306 LQQLQGLFLFGNNLQG  321 (331)
Q Consensus       306 l~~L~~L~l~~n~~~~  321 (331)
                      +++|+.|++++|+++.
T Consensus       293 l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          293 LPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CCCCSCEECSSTTTSC
T ss_pred             CCCccEEECcCCCCCC
Confidence            8999999999999874

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.87  E-value=1.9e-21  Score=166.94  Aligned_cols=207  Identities=20%  Similarity=0.306  Sum_probs=159.5

Q ss_pred             EcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccccCcccc
Q 036258           61 RLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAH  140 (331)
Q Consensus        61 ~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~  140 (331)
                      .+..+.+.+.+..   ..+++|++|++++|.+.. ++ .+..+++|++|++++|.+... +. +..+++|++|++++|..
T Consensus        25 ~l~~~~~~~~~~~---~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l   97 (308)
T 1h6u_A           25 AAGKSNVTDTVTQ---ADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPL   97 (308)
T ss_dssp             HTTCSSTTSEECH---HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCC
T ss_pred             HhCCCCcCceecH---HHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcC
Confidence            3445555532332   358899999999999874 44 688999999999999999844 33 88999999999987776


Q ss_pred             ccccccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccC
Q 036258          141 NSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSS  220 (331)
Q Consensus       141 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~  220 (331)
                      ..+.      .+..+++|++|++++|.+..++. +..+++|++|++++|.+.+..+  +..+++|++|++++|.+...  
T Consensus        98 ~~~~------~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--  166 (308)
T 1h6u_A           98 KNVS------AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL--  166 (308)
T ss_dssp             SCCG------GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--
T ss_pred             CCch------hhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC--
Confidence            5432      23478899999999999887764 7888999999999998876533  77888999999999988753  


Q ss_pred             CCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCcc
Q 036258          221 TTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNG  297 (331)
Q Consensus       221 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~  297 (331)
                            +. +..+++|++|++++|.+.+..+  +..++ +|++|++++|.+.+. + .+..+++|+.|++++|++++
T Consensus       167 ------~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~-~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          167 ------TP-LANLSKLTTLKADDNKISDISP--LASLP-NLIEVHLKNNQISDV-S-PLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             ------GG-GTTCTTCCEEECCSSCCCCCGG--GGGCT-TCCEEECTTSCCCBC-G-GGTTCTTCCEEEEEEEEEEC
T ss_pred             ------hh-hcCCCCCCEEECCCCccCcChh--hcCCC-CCCEEEccCCccCcc-c-cccCCCCCCEEEccCCeeec
Confidence                  22 7788889999999998874433  55555 888888888888743 3 37888888888888888873

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=4.7e-21  Score=159.76  Aligned_cols=180  Identities=24%  Similarity=0.318  Sum_probs=152.1

Q ss_pred             CCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccc
Q 036258           55 SSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLV  134 (331)
Q Consensus        55 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  134 (331)
                      ...++++++++.++ .+|..+   .+.++.|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|+
T Consensus        14 ~~~~~l~~~~~~l~-~~p~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~   89 (251)
T 3m19_A           14 EGKKEVDCQGKSLD-SVPSGI---PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG   89 (251)
T ss_dssp             GGGTEEECTTCCCS-SCCSCC---CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCeEEecCCCCcc-ccCCCC---CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEE
Confidence            45789999999998 898766   47899999999999988888899999999999999999987778889999999999


Q ss_pred             cCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcc-cccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCC
Q 036258          135 LGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPN-SITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNN  213 (331)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~  213 (331)
                      +++|...    .++...+..+++|++|++++|.++.++. .+..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus        90 L~~n~l~----~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N  165 (251)
T 3m19_A           90 LANNQLA----SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN  165 (251)
T ss_dssp             CTTSCCC----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCCccc----ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCC
Confidence            9777665    3444555588999999999999987764 4688899999999999998777778888999999999999


Q ss_pred             cccCccCCCccccccccccCCCCcEEEeeccccccc
Q 036258          214 YLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGI  249 (331)
Q Consensus       214 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  249 (331)
                      .+..++.       ..+..+++|++|++++|++...
T Consensus       166 ~l~~~~~-------~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          166 QLQSVPH-------GAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CCSCCCT-------TTTTTCTTCCEEECCSCCBCTT
T ss_pred             cCCccCH-------HHHhCCCCCCEEEeeCCceeCC
Confidence            8886432       3477889999999999998755

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.87  E-value=2.8e-21  Score=159.97  Aligned_cols=165  Identities=19%  Similarity=0.255  Sum_probs=129.7

Q ss_pred             CCCCCcEEEcCCCC-CCCCc-ccccCCCCCceeeCcC-ccccccCchhccCCCCCCEEEccCCcccCccCCCcccccccc
Q 036258          154 SLPNLKWLALGMNK-LRTIP-NSITNASELTLLELGK-NSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSL  230 (331)
Q Consensus       154 ~l~~L~~L~l~~~~-l~~~~-~~~~~l~~L~~L~l~~-n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~  230 (331)
                      .+++|++|++++|. ++.++ ..+..+++|++|++++ |.+....+..|..+++|++|++++|.+..+        +. +
T Consensus        53 ~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~l--------p~-~  123 (239)
T 2xwt_C           53 NLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMF--------PD-L  123 (239)
T ss_dssp             TCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSC--------CC-C
T ss_pred             CCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccc--------cc-c
Confidence            45566666666665 65554 4677888899999988 888877778888999999999999988863        32 6


Q ss_pred             ccCCCCc---EEEeecc-cccccCCchhhhcccccc-EEEeccCcccccCCccccCCCCCCEEEccCCC-CcccCCcCcc
Q 036258          231 TNCIYLK---VLGLHSN-QLSGILPPLIGNFSDSLQ-QFYAYDCELKGSIPQEIGNLNGLIDLRLQDND-LNGTIPTTVG  304 (331)
Q Consensus       231 ~~~~~L~---~L~l~~n-~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~  304 (331)
                      ..+++|+   +|++++| .+.+..+..+..+. +++ .|++++|.+....+..+.. ++|+.|++++|+ +++..+..|.
T Consensus       124 ~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~-~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~  201 (239)
T 2xwt_C          124 TKVYSTDIFFILEITDNPYMTSIPVNAFQGLC-NETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFG  201 (239)
T ss_dssp             TTCCBCCSEEEEEEESCTTCCEECTTTTTTTB-SSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTT
T ss_pred             ccccccccccEEECCCCcchhhcCcccccchh-cceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhh
Confidence            6777777   9999999 88866666677776 999 9999999998433444444 899999999995 9866667889


Q ss_pred             CC-CCCCeEeccCCeeeecCCcc-ccCC
Q 036258          305 RL-QQLQGLFLFGNNLQGSIPSD-LCHW  330 (331)
Q Consensus       305 ~l-~~L~~L~l~~n~~~~~~p~~-~~~~  330 (331)
                      .+ ++|+.|++++|+++ .+|.. +.++
T Consensus       202 ~l~~~L~~L~l~~N~l~-~l~~~~~~~L  228 (239)
T 2xwt_C          202 GVYSGPSLLDVSQTSVT-ALPSKGLEHL  228 (239)
T ss_dssp             TCSBCCSEEECTTCCCC-CCCCTTCTTC
T ss_pred             ccccCCcEEECCCCccc-cCChhHhccC
Confidence            99 99999999999999 67753 4443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.86  E-value=2e-20  Score=155.94  Aligned_cols=178  Identities=24%  Similarity=0.317  Sum_probs=104.6

Q ss_pred             CCCEEEccCccccccCCccccCcccccccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCc-ccccCCCCCce
Q 036258          105 QLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIP-NSITNASELTL  183 (331)
Q Consensus       105 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~~~l~~L~~  183 (331)
                      ..++++++++.++ .+|..+.  +.+++|++++|....+    +...+..+++|++|++++|.+..++ ..+..+++|++
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~   87 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATL----SDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGT   87 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCC----CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCcc----CHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCE
Confidence            4567777777776 4555443  4666777755544322    2223335666666666666666443 34566666666


Q ss_pred             eeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccE
Q 036258          184 LELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQ  263 (331)
Q Consensus       184 L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~  263 (331)
                      |++++|.+....+..+..+++|++|++++|.+..++.       ..+..+++|++|++++|.+.+..+..+..++ +|++
T Consensus        88 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~  159 (251)
T 3m19_A           88 LGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS-------GVFDRLTKLKELRLNTNQLQSIPAGAFDKLT-NLQT  159 (251)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCE
T ss_pred             EECCCCcccccChhHhcccCCCCEEEcCCCcCCCcCh-------hHhccCCcccEEECcCCcCCccCHHHcCcCc-CCCE
Confidence            6666666665555566666666666666666664322       2245566666666666666644444454444 6666


Q ss_pred             EEeccCcccccCCccccCCCCCCEEEccCCCCcc
Q 036258          264 FYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNG  297 (331)
Q Consensus       264 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~  297 (331)
                      |++++|.+.+..+..+..+++|+.|++++|++..
T Consensus       160 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          160 LSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             EECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred             EECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence            6666666664444556666666666666666653

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.86  E-value=1.8e-20  Score=163.91  Aligned_cols=237  Identities=19%  Similarity=0.215  Sum_probs=144.5

Q ss_pred             cEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCC-ccccCccccccc-cc
Q 036258           58 KMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLP-ENIGNLSKLRSL-VL  135 (331)
Q Consensus        58 ~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L-~l  135 (331)
                      ++++.++++++ ++|.++   .+++++|+|++|+|+...+.+|.++++|++|++++|.+.+.++ ..|.+++++.++ .+
T Consensus        12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            46677777776 777655   3567777777777775555567777777777777777654444 456667666553 33


Q ss_pred             CccccccccccCCcchhcCCCCCcEEEcCCCCCCCCc-ccccCCCCCceeeCcC-ccccccCchhccCCC-CCCEEEccC
Q 036258          136 GHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIP-NSITNASELTLLELGK-NSFSGLVPNTFGNLR-FLSLLDLGN  212 (331)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~-n~~~~~~~~~l~~~~-~L~~L~l~~  212 (331)
                      .+|...    .++...+..+++|++|++++|.+..++ ..+....++..+++.+ +.+....+..|..+. .++.|++++
T Consensus        88 ~~N~l~----~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~  163 (350)
T 4ay9_X           88 KANNLL----YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK  163 (350)
T ss_dssp             EETTCC----EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS
T ss_pred             cCCccc----ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc
Confidence            233333    334445556777777777777777554 3344445666666644 455555555555553 477777777


Q ss_pred             CcccCccCCCccccccccccCCCCcEEEeec-ccccccCCc-hhhhccccccEEEeccCcccccCCccccCCCCCCEEEc
Q 036258          213 NYLTTRSSTTEWSFLSSLTNCIYLKVLGLHS-NQLSGILPP-LIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRL  290 (331)
Q Consensus       213 ~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l  290 (331)
                      |.++.++.        ......+|+++++.+ |.+. .+|. .+..+. +|+.|++++|+++ .+|..  .+.+|+.|.+
T Consensus       164 N~i~~i~~--------~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~-~L~~LdLs~N~l~-~lp~~--~~~~L~~L~~  230 (350)
T 4ay9_X          164 NGIQEIHN--------SAFNGTQLDELNLSDNNNLE-ELPNDVFHGAS-GPVILDISRTRIH-SLPSY--GLENLKKLRA  230 (350)
T ss_dssp             SCCCEECT--------TSSTTEEEEEEECTTCTTCC-CCCTTTTTTEE-CCSEEECTTSCCC-CCCSS--SCTTCCEEEC
T ss_pred             ccccCCCh--------hhccccchhHHhhccCCccc-CCCHHHhccCc-ccchhhcCCCCcC-ccChh--hhccchHhhh
Confidence            77775432        233445677777765 4444 4444 444454 7777888777776 34432  3445566665


Q ss_pred             cCCCCcccCCcCccCCCCCCeEeccC
Q 036258          291 QDNDLNGTIPTTVGRLQQLQGLFLFG  316 (331)
Q Consensus       291 ~~n~l~~~~~~~l~~l~~L~~L~l~~  316 (331)
                      .++.-...+|. +..+++|+.+++.+
T Consensus       231 l~~~~l~~lP~-l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          231 RSTYNLKKLPT-LEKLVALMEASLTY  255 (350)
T ss_dssp             TTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred             ccCCCcCcCCC-chhCcChhhCcCCC
Confidence            55543335653 66777777777765

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.85  E-value=2.8e-22  Score=174.43  Aligned_cols=241  Identities=17%  Similarity=0.191  Sum_probs=183.8

Q ss_pred             hhcCC--CCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCccccc-CCccCcCCCCCCEEEccCccccccCCccccC
Q 036258           50 CFYNI--SSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQ-IPLSLSKCTQLQHLWLEHNKFTGRLPENIGN  126 (331)
Q Consensus        50 ~~~~~--~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  126 (331)
                      .+..+  ++++.|+++++.+.+..+ .+ ..+++|++|++++|.+.+. .+..+..+++|++|++++|.+++..+..+..
T Consensus        63 ~~~~~~~~~l~~L~l~~n~l~~~~~-~~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~  140 (336)
T 2ast_B           63 VTGRLLSQGVIAFRCPRSFMDQPLA-EH-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK  140 (336)
T ss_dssp             HHHHHHHTTCSEEECTTCEECSCCC-SC-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTT
T ss_pred             HHHhhhhccceEEEcCCccccccch-hh-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhc
Confidence            44555  899999999999985444 44 4699999999999998754 6777889999999999999998778888999


Q ss_pred             cccccccccCccccccccccCCcchhcCCCCCcEEEcCCC-CCCC--CcccccCCC-CCceeeCcCcc--cc-ccCchhc
Q 036258          127 LSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMN-KLRT--IPNSITNAS-ELTLLELGKNS--FS-GLVPNTF  199 (331)
Q Consensus       127 l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~--~~~~~~~l~-~L~~L~l~~n~--~~-~~~~~~l  199 (331)
                      +++|++|+++++.  .+.+......+..+++|++|++++| .++.  ++..+..++ +|++|++++|.  +. ...+..+
T Consensus       141 ~~~L~~L~L~~~~--~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~  218 (336)
T 2ast_B          141 NSNLVRLNLSGCS--GFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV  218 (336)
T ss_dssp             CTTCSEEECTTCB--SCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHH
T ss_pred             CCCCCEEECCCCC--CCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHH
Confidence            9999999997652  2222112233447899999999999 8873  567788899 99999999994  44 3456677


Q ss_pred             cCCCCCCEEEccCCc-ccCccCCCccccccccccCCCCcEEEeeccc-ccccCCchhhhccccccEEEeccCcccccCCc
Q 036258          200 GNLRFLSLLDLGNNY-LTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQ-LSGILPPLIGNFSDSLQQFYAYDCELKGSIPQ  277 (331)
Q Consensus       200 ~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  277 (331)
                      ..+++|++|++++|. ++.       ..+..+..+++|++|++++|. +.......+..++ +|+.|++++| ++.....
T Consensus       219 ~~~~~L~~L~l~~~~~l~~-------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~~-i~~~~~~  289 (336)
T 2ast_B          219 RRCPNLVHLDLSDSVMLKN-------DCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIP-TLKTLQVFGI-VPDGTLQ  289 (336)
T ss_dssp             HHCTTCSEEECTTCTTCCG-------GGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCT-TCCEEECTTS-SCTTCHH
T ss_pred             hhCCCCCEEeCCCCCcCCH-------HHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCC-CCCEEeccCc-cCHHHHH
Confidence            789999999999998 554       345568889999999999995 3333333566655 9999999999 5433222


Q ss_pred             cccCCCCCCEEEccCCCCcccCCcCccC
Q 036258          278 EIGNLNGLIDLRLQDNDLNGTIPTTVGR  305 (331)
Q Consensus       278 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~  305 (331)
                      .+.  ..+..|++++|.+++..|..++.
T Consensus       290 ~l~--~~l~~L~l~~n~l~~~~~~~~~~  315 (336)
T 2ast_B          290 LLK--EALPHLQINCSHFTTIARPTIGN  315 (336)
T ss_dssp             HHH--HHSTTSEESCCCSCCTTCSSCSS
T ss_pred             HHH--hhCcceEEecccCccccCCcccc
Confidence            222  23667779999999888776664

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.83  E-value=6.2e-20  Score=148.54  Aligned_cols=149  Identities=24%  Similarity=0.287  Sum_probs=87.0

Q ss_pred             ccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccccC
Q 036258           57 LKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLG  136 (331)
Q Consensus        57 L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  136 (331)
                      .+.+++++++++ .+|..+   .++|++|++++|.+.+..+..|..+++|++|++++|.++...+..|..+++|++|+++
T Consensus         9 ~~~v~c~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls   84 (208)
T 2o6s_A            9 GTTVECYSQGRT-SVPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS   84 (208)
T ss_dssp             TTEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCcc-CCCCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECC
Confidence            467888888887 777654   5688999999998886666667888999999999888875444445556666666664


Q ss_pred             ccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcc-cccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCC
Q 036258          137 HKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPN-SITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNN  213 (331)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~  213 (331)
                      +|...    .++...+..+++|++|++++|.+..++. .+..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus        85 ~n~l~----~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N  158 (208)
T 2o6s_A           85 TNQLQ----SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN  158 (208)
T ss_dssp             SSCCC----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred             CCcCC----ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence            44333    1222222244445555555444443332 2344444444444444444333333444444444444444

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.83  E-value=5.5e-20  Score=148.83  Aligned_cols=159  Identities=24%  Similarity=0.330  Sum_probs=89.3

Q ss_pred             CCcEEEcCCCCCCCCc-ccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCC
Q 036258          157 NLKWLALGMNKLRTIP-NSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIY  235 (331)
Q Consensus       157 ~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~  235 (331)
                      ++++|++++|.+..++ ..+..+++|++|++++|.+....+..+..+++|++|++++|.+..++.       ..+..+++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-------~~~~~l~~  101 (208)
T 2o6s_A           29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPN-------GVFDKLTQ  101 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-------TTTTTCTT
T ss_pred             CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCH-------hHhcCccC
Confidence            4555555555555443 234555556666666655554444445555666666666665554321       22455566


Q ss_pred             CcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEecc
Q 036258          236 LKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLF  315 (331)
Q Consensus       236 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  315 (331)
                      |++|++++|.+.+..+..+..++ +|++|++++|.+++..+..+..+++|+.|++++|++.+       .+++|+.|++.
T Consensus       102 L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~  173 (208)
T 2o6s_A          102 LKELALNTNQLQSLPDGVFDKLT-QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEW  173 (208)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHH
T ss_pred             CCEEEcCCCcCcccCHhHhccCC-cCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHH
Confidence            66666666666544444444444 66666666666664444446666666666666666552       34556666666


Q ss_pred             CCeeeecCCccccCC
Q 036258          316 GNNLQGSIPSDLCHW  330 (331)
Q Consensus       316 ~n~~~~~~p~~~~~~  330 (331)
                      .|.++|.+|+.++.+
T Consensus       174 ~n~~~g~ip~~~~~l  188 (208)
T 2o6s_A          174 INKHSGVVRNSAGSV  188 (208)
T ss_dssp             HHHCTTTBBCTTSSB
T ss_pred             HHhCCceeeccCccc
Confidence            666666666665543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.82  E-value=7.5e-20  Score=168.46  Aligned_cols=187  Identities=25%  Similarity=0.327  Sum_probs=143.0

Q ss_pred             CCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccccCccccccccccCCcchhcCCCCCcE
Q 036258           81 SLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKW  160 (331)
Q Consensus        81 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~  160 (331)
                      +++.|++++|.+.+ +|..+  .++|++|++++|.++ .+|   ..+++|++|++++|.+..    ++. +. .  +|++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~----ip~-l~-~--~L~~  124 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST----LPE-LP-A--SLKH  124 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC----CCC-CC-T--TCCE
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC----cch-hh-c--CCCE
Confidence            89999999999885 66655  378999999999998 566   456889999997776654    333 22 2  8999


Q ss_pred             EEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEE
Q 036258          161 LALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLG  240 (331)
Q Consensus       161 L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~  240 (331)
                      |++++|.++.+|.   .+++|+.|++++|.+.+. |.   .+++|++|++++|.++.+        +. +.  ++|++|+
T Consensus       125 L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l-p~---~l~~L~~L~Ls~N~L~~l--------p~-l~--~~L~~L~  186 (571)
T 3cvr_A          125 LDVDNNQLTMLPE---LPALLEYINADNNQLTML-PE---LPTSLEVLSVRNNQLTFL--------PE-LP--ESLEALD  186 (571)
T ss_dssp             EECCSSCCSCCCC---CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSCC--------CC-CC--TTCCEEE
T ss_pred             EECCCCcCCCCCC---cCccccEEeCCCCccCcC-CC---cCCCcCEEECCCCCCCCc--------ch-hh--CCCCEEE
Confidence            9999998888776   578899999999988763 43   467899999999988763        22 33  7889999


Q ss_pred             eecccccccCCchhhhccccc-------cEEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCC
Q 036258          241 LHSNQLSGILPPLIGNFSDSL-------QQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRL  306 (331)
Q Consensus       241 l~~n~~~~~~~~~~~~~~~~L-------~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l  306 (331)
                      +++|.+. .+|. +..   +|       +.|++++|.++ .+|..+..+++|+.|++++|++++..|..+..+
T Consensus       187 Ls~N~L~-~lp~-~~~---~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l  253 (571)
T 3cvr_A          187 VSTNLLE-SLPA-VPV---RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ  253 (571)
T ss_dssp             CCSSCCS-SCCC-CC-----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred             CcCCCCC-chhh-HHH---hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence            9999887 5555 332   56       88888888888 678777778888888888888887776665543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.81  E-value=1.8e-19  Score=165.95  Aligned_cols=194  Identities=21%  Similarity=0.307  Sum_probs=156.7

Q ss_pred             CccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCccccccccc
Q 036258           56 SLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVL  135 (331)
Q Consensus        56 ~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  135 (331)
                      +++.|++++|.++ .+|..+   +++|++|++++|.+. .+|   ..+++|++|++++|.+++ +|. +..  +|++|++
T Consensus        60 ~L~~L~Ls~n~L~-~lp~~l---~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L  127 (571)
T 3cvr_A           60 QFSELQLNRLNLS-SLPDNL---PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV  127 (571)
T ss_dssp             TCSEEECCSSCCS-CCCSCC---CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred             CccEEEeCCCCCC-ccCHhH---cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence            8999999999998 688866   488999999999998 566   457999999999999995 676 655  9999999


Q ss_pred             CccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcc
Q 036258          136 GHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYL  215 (331)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l  215 (331)
                      ++|.+..    ++.    .+++|++|++++|.++.+|.   .+++|+.|++++|.+.+ +|. +.  ++|++|++++|.+
T Consensus       128 s~N~l~~----lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L  192 (571)
T 3cvr_A          128 DNNQLTM----LPE----LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLL  192 (571)
T ss_dssp             CSSCCSC----CCC----CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCC
T ss_pred             CCCcCCC----CCC----cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCC
Confidence            8776654    333    57899999999999998886   57899999999999987 455 55  8999999999999


Q ss_pred             cCccCCCccccccc-cccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCC
Q 036258          216 TTRSSTTEWSFLSS-LTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLN  283 (331)
Q Consensus       216 ~~~~~~~~~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~  283 (331)
                      +.++. .    ... ....+.|+.|++++|.++ .+|..+..++ +|+.|++++|.+++.+|..+..+.
T Consensus       193 ~~lp~-~----~~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~-~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          193 ESLPA-V----PVRNHHSEETEIFFRCRENRIT-HIPENILSLD-PTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             SSCCC-C----C--------CCEEEECCSSCCC-CCCGGGGGSC-TTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             Cchhh-H----HHhhhcccccceEEecCCCcce-ecCHHHhcCC-CCCEEEeeCCcCCCcCHHHHHHhh
Confidence            86532 1    100 111223399999999998 6888888866 999999999999988888776653

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.81  E-value=8.1e-19  Score=143.08  Aligned_cols=152  Identities=22%  Similarity=0.261  Sum_probs=101.6

Q ss_pred             cEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcE
Q 036258          159 KWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKV  238 (331)
Q Consensus       159 ~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~  238 (331)
                      +.+++.+++++.+|..+.  +.++.|++++|.+....+..|..+++|++|++++|.+..+       .+..+..+++|++
T Consensus        14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~-------~~~~~~~l~~L~~   84 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL-------APDAFQGLRSLNS   84 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEE-------CTTTTTTCSSCCE
T ss_pred             CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCc-------CHHHhhCCcCCCE
Confidence            456666666666665443  5677777777777666666667777777777777776653       2344666777777


Q ss_pred             EEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEeccCCe
Q 036258          239 LGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNN  318 (331)
Q Consensus       239 L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  318 (331)
                      |++++|.+.+..+..+..+. +|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|+
T Consensus        85 L~Ls~N~l~~l~~~~f~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B           85 LVLYGNKITELPKSLFEGLF-SLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             EECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EECCCCcCCccCHhHccCCC-CCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence            77777777644444444444 77777777777776666677777777777777777775555567777777777777777


Q ss_pred             ee
Q 036258          319 LQ  320 (331)
Q Consensus       319 ~~  320 (331)
                      +.
T Consensus       164 ~~  165 (220)
T 2v9t_B          164 FI  165 (220)
T ss_dssp             EE
T ss_pred             cC
Confidence            65

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.81  E-value=7.2e-19  Score=143.40  Aligned_cols=156  Identities=21%  Similarity=0.246  Sum_probs=106.2

Q ss_pred             cEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCc-hhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCc
Q 036258          159 KWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVP-NTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLK  237 (331)
Q Consensus       159 ~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~  237 (331)
                      ++++++++.++.+|..+.  ..+++|++++|.+....+ ..|..+++|++|++++|.++.++       +..+..+++|+
T Consensus        14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~-------~~~~~~l~~L~   84 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE-------EGAFEGASGVN   84 (220)
T ss_dssp             TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEEC-------TTTTTTCTTCC
T ss_pred             CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEEC-------HHHhCCCCCCC
Confidence            466677777766665442  345677777777765533 44666777777777777776532       22466777777


Q ss_pred             EEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEeccCC
Q 036258          238 VLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGN  317 (331)
Q Consensus       238 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  317 (331)
                      +|++++|.+.+..+..+..+. +|++|++++|.+.+..|..+.++++|+.|++++|.+++..|..|..+++|+.|++++|
T Consensus        85 ~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  163 (220)
T 2v70_A           85 EILLTSNRLENVQHKMFKGLE-SLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN  163 (220)
T ss_dssp             EEECCSSCCCCCCGGGGTTCS-SCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             EEECCCCccCccCHhHhcCCc-CCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCc
Confidence            777777777655555565555 7777777777777666777777777777777777777666777777777777777777


Q ss_pred             eeeecCC
Q 036258          318 NLQGSIP  324 (331)
Q Consensus       318 ~~~~~~p  324 (331)
                      ++++..+
T Consensus       164 ~l~c~c~  170 (220)
T 2v70_A          164 PFNCNCY  170 (220)
T ss_dssp             CEECSGG
T ss_pred             CCcCCCc
Confidence            7765443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.81  E-value=7e-19  Score=153.79  Aligned_cols=225  Identities=16%  Similarity=0.145  Sum_probs=168.7

Q ss_pred             cEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccccCccccccccccCCcchhcCCCCCcE-E
Q 036258           83 EQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKW-L  161 (331)
Q Consensus        83 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~-L  161 (331)
                      ++++.++++++ .+|..+  .+++++|+|++|+++...+.+|.++++|++|++++|.+   ...++..+|..++++++ +
T Consensus        12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i---~~~i~~~~f~~L~~l~~~l   85 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV---LEVIEADVFSNLPKLHEIR   85 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTT---CCEECTTSBCSCTTCCEEE
T ss_pred             CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCC---CCccChhHhhcchhhhhhh
Confidence            67888888887 667665  36899999999999965556899999999999966554   34456667778888876 5


Q ss_pred             EcCCCCCCCCc-ccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccC-CcccCccCCCccccccccccCC-CCcE
Q 036258          162 ALGMNKLRTIP-NSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGN-NYLTTRSSTTEWSFLSSLTNCI-YLKV  238 (331)
Q Consensus       162 ~l~~~~l~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~-~~l~~~~~~~~~~~~~~~~~~~-~L~~  238 (331)
                      .+.+|.+..++ ..|..+++|++|++++|.+....+..+.....+..+++.. +.+..++..       .+..+. .++.
T Consensus        86 ~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~-------~f~~~~~~l~~  158 (350)
T 4ay9_X           86 IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERN-------SFVGLSFESVI  158 (350)
T ss_dssp             EEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTT-------SSTTSBSSCEE
T ss_pred             cccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccccccccccc-------chhhcchhhhh
Confidence            56778888764 7789999999999999999877666676777888999876 466654322       355554 6889


Q ss_pred             EEeecccccccCCchhhhccccccEEEeccCcccccCC-ccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEeccCC
Q 036258          239 LGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIP-QEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGN  317 (331)
Q Consensus       239 L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  317 (331)
                      |++++|.+.. ++...+... +++++++.+++..+.+| .++.++++|+.|++++|.++ .+|..  .+.+|+.|.+.++
T Consensus       159 L~L~~N~i~~-i~~~~f~~~-~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~--~~~~L~~L~~l~~  233 (350)
T 4ay9_X          159 LWLNKNGIQE-IHNSAFNGT-QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSY--GLENLKKLRARST  233 (350)
T ss_dssp             EECCSSCCCE-ECTTSSTTE-EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSS--SCTTCCEEECTTC
T ss_pred             hccccccccC-CChhhcccc-chhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChh--hhccchHhhhccC
Confidence            9999999984 554444444 89999998654444555 57899999999999999999 56542  2456666766665


Q ss_pred             eeeecCCc
Q 036258          318 NLQGSIPS  325 (331)
Q Consensus       318 ~~~~~~p~  325 (331)
                      .-...+|+
T Consensus       234 ~~l~~lP~  241 (350)
T 4ay9_X          234 YNLKKLPT  241 (350)
T ss_dssp             TTCCCCCC
T ss_pred             CCcCcCCC
Confidence            54447774

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.80  E-value=1.3e-18  Score=148.09  Aligned_cols=174  Identities=29%  Similarity=0.423  Sum_probs=144.4

Q ss_pred             hhcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCccc
Q 036258           50 CFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSK  129 (331)
Q Consensus        50 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~  129 (331)
                      .+..+++|+.|++++|.+. .++.  +..+++|++|++++|.+.+..+  +..+++|++|++++|.++. + ..+..+++
T Consensus        41 ~~~~l~~L~~L~l~~~~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~  113 (291)
T 1h6t_A           41 TQNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKK  113 (291)
T ss_dssp             CHHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTT
T ss_pred             chhhcCcccEEEccCCCcc-cChh--HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCC
Confidence            3667889999999999998 6654  4779999999999999985443  8899999999999999974 3 34889999


Q ss_pred             ccccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEE
Q 036258          130 LRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLD  209 (331)
Q Consensus       130 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~  209 (331)
                      |++|++++|....+     .. +..+++|++|++++|.+..+ ..+..+++|++|++++|.+.+..+  +..+++|++|+
T Consensus       114 L~~L~L~~n~i~~~-----~~-l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~  184 (291)
T 1h6t_A          114 LKSLSLEHNGISDI-----NG-LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLY  184 (291)
T ss_dssp             CCEEECTTSCCCCC-----GG-GGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred             CCEEECCCCcCCCC-----hh-hcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh--hcCCCccCEEE
Confidence            99999987776653     22 33789999999999999877 578889999999999999986644  88899999999


Q ss_pred             ccCCcccCccCCCccccccccccCCCCcEEEeecccccc
Q 036258          210 LGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSG  248 (331)
Q Consensus       210 l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~  248 (331)
                      +++|.+..+        + .+..+++|+.|++++|.+..
T Consensus       185 L~~N~i~~l--------~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          185 LSKNHISDL--------R-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CCSSCCCBC--------G-GGTTCTTCSEEEEEEEEEEC
T ss_pred             CCCCcCCCC--------h-hhccCCCCCEEECcCCcccC
Confidence            999988753        2 37888999999999999874

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.80  E-value=1.6e-18  Score=142.25  Aligned_cols=157  Identities=25%  Similarity=0.353  Sum_probs=116.3

Q ss_pred             CCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCC
Q 036258          157 NLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYL  236 (331)
Q Consensus       157 ~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L  236 (331)
                      ..+.++.+++++..+|..+.  ++|+.|++++|.+.+..+..|..+++|++|++++|.+..++.       ..+..+++|
T Consensus        20 s~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~-------~~~~~l~~L   90 (229)
T 3e6j_A           20 SGTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPV-------GVFDSLTQL   90 (229)
T ss_dssp             ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-------TTTTTCTTC
T ss_pred             eCCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcCh-------hhcccCCCc
Confidence            35667777777777776553  678888888888877777777788888888888888765432       336777888


Q ss_pred             cEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEeccC
Q 036258          237 KVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFG  316 (331)
Q Consensus       237 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~  316 (331)
                      ++|++++|.+.+..+..+..++ +|+.|++++|.+. .+|..+..+++|+.|++++|.+++..+..+..+++|+.|++++
T Consensus        91 ~~L~Ls~N~l~~l~~~~~~~l~-~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  168 (229)
T 3e6j_A           91 TVLDLGTNQLTVLPSAVFDRLV-HLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFG  168 (229)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             CEEECCCCcCCccChhHhCcch-hhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeC
Confidence            8888888888755555555555 8888888888887 6777778888888888888888854445677788888888888


Q ss_pred             CeeeecCC
Q 036258          317 NNLQGSIP  324 (331)
Q Consensus       317 n~~~~~~p  324 (331)
                      |+++...+
T Consensus       169 N~~~c~c~  176 (229)
T 3e6j_A          169 NPWDCECR  176 (229)
T ss_dssp             SCBCTTBG
T ss_pred             CCccCCcc
Confidence            88775543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.80  E-value=2.2e-21  Score=181.54  Aligned_cols=167  Identities=16%  Similarity=0.167  Sum_probs=110.8

Q ss_pred             CCCCCcEEEcCC-----------CCCC--CCcccccCCCCCceeeCcCccccccCchhccC-CCCCCEEEcc----CCcc
Q 036258          154 SLPNLKWLALGM-----------NKLR--TIPNSITNASELTLLELGKNSFSGLVPNTFGN-LRFLSLLDLG----NNYL  215 (331)
Q Consensus       154 ~l~~L~~L~l~~-----------~~l~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-~~~L~~L~l~----~~~l  215 (331)
                      .+++|++|++.+           +.++  .++.....+++|++|+++.+.+.+.....+.. +++|++|+++    .+.+
T Consensus       340 ~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l  419 (592)
T 3ogk_B          340 YCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERI  419 (592)
T ss_dssp             HCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCC
T ss_pred             hCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccc
Confidence            456666666662           3333  12222344677777777666665544444443 6778888886    3344


Q ss_pred             cCccCCCccccccccccCCCCcEEEeeccc--ccccCCchhhhccccccEEEeccCcccc-cCCccccCCCCCCEEEccC
Q 036258          216 TTRSSTTEWSFLSSLTNCIYLKVLGLHSNQ--LSGILPPLIGNFSDSLQQFYAYDCELKG-SIPQEIGNLNGLIDLRLQD  292 (331)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~  292 (331)
                      +..+.+.  .+...+..+++|++|+++.+.  +++..+..+....++|++|++++|.+++ .++..+.++++|+.|++++
T Consensus       420 ~~~p~~~--~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~  497 (592)
T 3ogk_B          420 TDLPLDN--GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRG  497 (592)
T ss_dssp             SSCCCHH--HHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEES
T ss_pred             cCchHHH--HHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccC
Confidence            4321110  133345678899999997533  6656666666655689999999999886 3455668899999999999


Q ss_pred             CCCccc-CCcCccCCCCCCeEeccCCeeeec
Q 036258          293 NDLNGT-IPTTVGRLQQLQGLFLFGNNLQGS  322 (331)
Q Consensus       293 n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~  322 (331)
                      |.+++. ++..+..+++|++|++++|++++.
T Consensus       498 n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          498 CCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             CCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             CCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            998753 333445789999999999999865

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.79  E-value=2.5e-18  Score=141.10  Aligned_cols=154  Identities=25%  Similarity=0.278  Sum_probs=120.0

Q ss_pred             CccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCccccccccc
Q 036258           56 SLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVL  135 (331)
Q Consensus        56 ~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  135 (331)
                      ..+.++.+++.+. .+|..+   .++|++|++++|.+.+..+..|..+++|++|++++|.++...+..|..+++|++|++
T Consensus        20 s~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L   95 (229)
T 3e6j_A           20 SGTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL   95 (229)
T ss_dssp             ETTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             eCCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence            3678999999998 899766   589999999999999888888999999999999999998555566778888888888


Q ss_pred             CccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcc
Q 036258          136 GHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYL  215 (331)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l  215 (331)
                      ++|.+.    .++...+..+++|++|++++|.+..+|..+..+++|+.|++++|.+....+..+..+++|++|++++|.+
T Consensus        96 s~N~l~----~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  171 (229)
T 3e6j_A           96 GTNQLT----VLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW  171 (229)
T ss_dssp             CSSCCC----CCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred             CCCcCC----ccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence            666554    3344444467788888888887777777777777777777777777766556667777777777777766


Q ss_pred             cC
Q 036258          216 TT  217 (331)
Q Consensus       216 ~~  217 (331)
                      ..
T Consensus       172 ~c  173 (229)
T 3e6j_A          172 DC  173 (229)
T ss_dssp             CT
T ss_pred             cC
Confidence            54

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.79  E-value=1.6e-18  Score=147.46  Aligned_cols=186  Identities=23%  Similarity=0.374  Sum_probs=121.6

Q ss_pred             EEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccccCccccccccccCCcchhcCCCCCcEEEcC
Q 036258           85 LVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALG  164 (331)
Q Consensus        85 L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~  164 (331)
                      +.+..+.+....  .+..+++|++|++++|.+.. + ..+..+++|++|++++|....+.    .  +..+++|++|+++
T Consensus        29 ~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-~-~~~~~l~~L~~L~L~~n~l~~~~----~--l~~l~~L~~L~l~   98 (291)
T 1h6t_A           29 DNLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-V-QGIQYLPNVTKLFLNGNKLTDIK----P--LANLKNLGWLFLD   98 (291)
T ss_dssp             HHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCG----G--GTTCTTCCEEECC
T ss_pred             HHhcCCCccccc--chhhcCcccEEEccCCCccc-C-hhHhcCCCCCEEEccCCccCCCc----c--cccCCCCCEEECC
Confidence            344444443322  24567888888888888763 3 34667778888888666554432    1  3367777778877


Q ss_pred             CCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecc
Q 036258          165 MNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSN  244 (331)
Q Consensus       165 ~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n  244 (331)
                      +|.+..++. +..+++|++|++++|.+.+.  ..+..+++|++|++++|.+..+         ..+..+++|++|++++|
T Consensus        99 ~n~l~~~~~-l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~---------~~l~~l~~L~~L~L~~N  166 (291)
T 1h6t_A           99 ENKVKDLSS-LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI---------TVLSRLTKLDTLSLEDN  166 (291)
T ss_dssp             SSCCCCGGG-GTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC---------GGGGGCTTCSEEECCSS
T ss_pred             CCcCCCChh-hccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc---------hhhccCCCCCEEEccCC
Confidence            777776543 67777777777777777653  3466677777777777777642         23666777777777777


Q ss_pred             cccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCcc
Q 036258          245 QLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNG  297 (331)
Q Consensus       245 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~  297 (331)
                      .+.+..+  +..++ +|+.|++++|.+.+ ++ .+..+++|+.|++++|++..
T Consensus       167 ~l~~~~~--l~~l~-~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          167 QISDIVP--LAGLT-KLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CCCCCGG--GTTCT-TCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred             ccccchh--hcCCC-ccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence            7764433  44444 77777777777763 33 36677777777777777663

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.79  E-value=6.5e-19  Score=141.22  Aligned_cols=154  Identities=15%  Similarity=0.222  Sum_probs=127.1

Q ss_pred             CCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccC
Q 036258          154 SLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNC  233 (331)
Q Consensus       154 ~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~  233 (331)
                      .+++|++|++++|.+..++ .+..+++|++|++++|.+...  ..+..+++|++|++++|.+..       ..+..+..+
T Consensus        42 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~-------~~~~~l~~l  111 (197)
T 4ezg_A           42 QMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTS-------DKIPNLSGL  111 (197)
T ss_dssp             HHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBG-------GGSCCCTTC
T ss_pred             hcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCc-------ccChhhcCC
Confidence            5678999999999988777 688889999999999976533  467889999999999998876       345568889


Q ss_pred             CCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEe
Q 036258          234 IYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLF  313 (331)
Q Consensus       234 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  313 (331)
                      ++|++|++++|.+.+..+..+..++ +|++|++++|...+.++ .+..+++|+.|++++|.++ .++ .+..+++|+.|+
T Consensus       112 ~~L~~L~Ls~n~i~~~~~~~l~~l~-~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~-~~~-~l~~l~~L~~L~  187 (197)
T 4ezg_A          112 TSLTLLDISHSAHDDSILTKINTLP-KVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH-DYR-GIEDFPKLNQLY  187 (197)
T ss_dssp             TTCCEEECCSSBCBGGGHHHHTTCS-SCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCC-CCT-TGGGCSSCCEEE
T ss_pred             CCCCEEEecCCccCcHhHHHHhhCC-CCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCc-ChH-HhccCCCCCEEE
Confidence            9999999999999877788888776 99999999998333566 6899999999999999998 454 788999999999


Q ss_pred             ccCCeeee
Q 036258          314 LFGNNLQG  321 (331)
Q Consensus       314 l~~n~~~~  321 (331)
                      +++|++.+
T Consensus       188 l~~N~i~~  195 (197)
T 4ezg_A          188 AFSQTIGG  195 (197)
T ss_dssp             ECBC----
T ss_pred             eeCcccCC
Confidence            99999874

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.79  E-value=2.3e-18  Score=140.38  Aligned_cols=152  Identities=24%  Similarity=0.363  Sum_probs=108.8

Q ss_pred             ccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccccC
Q 036258           57 LKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLG  136 (331)
Q Consensus        57 L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  136 (331)
                      -+.++++++.++ .+|..+   .++++.|++++|.+.+..+..|..+++|++|++++|.++...|..|.++++|++|+++
T Consensus        13 ~~~v~c~~~~l~-~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls   88 (220)
T 2v9t_B           13 NNIVDCRGKGLT-EIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY   88 (220)
T ss_dssp             TTEEECTTSCCS-SCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred             CCEEEcCCCCcC-cCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence            368999999998 888766   4789999999999987777789999999999999999987778888888888888776


Q ss_pred             ccccccccccCCcchhcCCCCCcEEEcCCCCCCCC-cccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcc
Q 036258          137 HKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTI-PNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYL  215 (331)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l  215 (331)
                      +|.+.    .++...+..+++|++|++++|.+..+ +..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+
T Consensus        89 ~N~l~----~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B           89 GNKIT----ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             SSCCC----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CCcCC----ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence            65554    33444444566666666666666644 34555566666666666666555555555555666666665554


Q ss_pred             c
Q 036258          216 T  216 (331)
Q Consensus       216 ~  216 (331)
                      .
T Consensus       165 ~  165 (220)
T 2v9t_B          165 I  165 (220)
T ss_dssp             E
T ss_pred             C
Confidence            4

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.78  E-value=2.1e-18  Score=160.40  Aligned_cols=176  Identities=29%  Similarity=0.412  Sum_probs=143.5

Q ss_pred             hcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccc
Q 036258           51 FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKL  130 (331)
Q Consensus        51 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L  130 (331)
                      +..+++|+.|++++|.+. .++.  +..+++|+.|+|++|.+.+..+  +..+++|++|+|++|.+.. + ..+..+++|
T Consensus        39 ~~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L  111 (605)
T 1m9s_A           39 QNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-L-SSLKDLKKL  111 (605)
T ss_dssp             HHHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-TTSTTCTTC
T ss_pred             hhcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-C-hhhccCCCC
Confidence            667889999999999997 6763  4789999999999999885544  8899999999999999874 3 368889999


Q ss_pred             cccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEc
Q 036258          131 RSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDL  210 (331)
Q Consensus       131 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l  210 (331)
                      +.|++++|.+..+     .. +..+++|+.|++++|.+..+ ..+..+++|+.|++++|.+.+..+  +..+++|+.|+|
T Consensus       112 ~~L~Ls~N~l~~l-----~~-l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L  182 (605)
T 1m9s_A          112 KSLSLEHNGISDI-----NG-LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYL  182 (605)
T ss_dssp             CEEECTTSCCCCC-----GG-GGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred             CEEEecCCCCCCC-----cc-ccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEEC
Confidence            9999977776543     22 33788999999999998877 578888999999999999886655  788899999999


Q ss_pred             cCCcccCccCCCccccccccccCCCCcEEEeecccccccCC
Q 036258          211 GNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILP  251 (331)
Q Consensus       211 ~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  251 (331)
                      ++|.+..+         ..+..+++|+.|+|++|.+.+...
T Consensus       183 s~N~i~~l---------~~l~~l~~L~~L~L~~N~l~~~p~  214 (605)
T 1m9s_A          183 SKNHISDL---------RALAGLKNLDVLELFSQECLNKPI  214 (605)
T ss_dssp             CSSCCCBC---------GGGTTCTTCSEEECCSEEEECCCC
T ss_pred             cCCCCCCC---------hHHccCCCCCEEEccCCcCcCCcc
Confidence            99988753         237788899999999998875433

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.78  E-value=1e-18  Score=162.52  Aligned_cols=192  Identities=22%  Similarity=0.328  Sum_probs=140.2

Q ss_pred             CCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccc
Q 036258           55 SSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLV  134 (331)
Q Consensus        55 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  134 (331)
                      ..+..+.+..+.+.+.++.   ..+++|+.|++++|.+.. ++ .+..+++|++|+|++|.+.+..+  +..+++|+.|+
T Consensus        21 ~~l~~l~l~~~~i~~~~~~---~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~   93 (605)
T 1m9s_A           21 AETIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLF   93 (605)
T ss_dssp             HHHHHHHTTCSCTTSEECH---HHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEE
T ss_pred             HHHHHHhccCCCcccccch---hcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEE
Confidence            3455667777777633332   458899999999998874 34 58899999999999999885443  77888888888


Q ss_pred             cCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCc
Q 036258          135 LGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNY  214 (331)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~  214 (331)
                      +++|....+.     . +..+++|++|++++|.+..++ .+..+++|+.|++++|.+.+.  ..+..+++|+.|+|++|.
T Consensus        94 Ls~N~l~~l~-----~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~  164 (605)
T 1m9s_A           94 LDENKIKDLS-----S-LKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQ  164 (605)
T ss_dssp             CCSSCCCCCT-----T-STTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSC
T ss_pred             CcCCCCCCCh-----h-hccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCc
Confidence            8776665432     2 237788888888888887664 477788888888888888755  567778888888888887


Q ss_pred             ccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCccccc
Q 036258          215 LTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGS  274 (331)
Q Consensus       215 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  274 (331)
                      +...        +. +..+++|+.|+|++|.+.+.  ..+..++ +|+.|+|++|.+.+.
T Consensus       165 l~~~--------~~-l~~l~~L~~L~Ls~N~i~~l--~~l~~l~-~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          165 ISDI--------VP-LAGLTKLQNLYLSKNHISDL--RALAGLK-NLDVLELFSQECLNK  212 (605)
T ss_dssp             CCCC--------GG-GTTCTTCCEEECCSSCCCBC--GGGTTCT-TCSEEECCSEEEECC
T ss_pred             CCCc--------hh-hccCCCCCEEECcCCCCCCC--hHHccCC-CCCEEEccCCcCcCC
Confidence            7752        22 67778888888888887643  3455555 788888888877643

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.77  E-value=7e-18  Score=137.52  Aligned_cols=152  Identities=23%  Similarity=0.279  Sum_probs=93.3

Q ss_pred             ccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCC-ccCcCCCCCCEEEccCccccccCCccccCccccccccc
Q 036258           57 LKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIP-LSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVL  135 (331)
Q Consensus        57 L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  135 (331)
                      -+.++++++.++ .+|..+   .+.+++|++++|.+.+..+ ..|..+++|++|++++|.+++..+..|..+++|++|++
T Consensus        13 ~~~l~~s~n~l~-~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L   88 (220)
T 2v70_A           13 GTTVDCSNQKLN-KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL   88 (220)
T ss_dssp             TTEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCEeEeCCCCcc-cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence            358999999988 788755   4567899999999886644 45788999999999999888665556666666666666


Q ss_pred             CccccccccccCCcchhcCCCCCcEEEcCCCCCCCC-cccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCc
Q 036258          136 GHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTI-PNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNY  214 (331)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~  214 (331)
                      ++|...    .++...+..+++|++|++++|.+..+ +..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.
T Consensus        89 s~N~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A           89 TSNRLE----NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             CSSCCC----CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             CCCccC----ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence            544443    22233333455555555555555433 2444444455555555554444444444444444444444444


Q ss_pred             cc
Q 036258          215 LT  216 (331)
Q Consensus       215 l~  216 (331)
                      +.
T Consensus       165 l~  166 (220)
T 2v70_A          165 FN  166 (220)
T ss_dssp             EE
T ss_pred             Cc
Confidence            43

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.76  E-value=3.5e-18  Score=149.97  Aligned_cols=176  Identities=26%  Similarity=0.260  Sum_probs=135.3

Q ss_pred             ccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCc-CCCCCCEEEccCccccccCCccccCccccccccc
Q 036258           57 LKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLS-KCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVL  135 (331)
Q Consensus        57 L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  135 (331)
                      -+.++++++.++ .+|..+   .+.++.|+|++|.+.+..+..|. .+++|++|++++|.++...+..|..+++|++|++
T Consensus        20 ~~~l~c~~~~l~-~iP~~~---~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L   95 (361)
T 2xot_A           20 SNILSCSKQQLP-NVPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL   95 (361)
T ss_dssp             TTEEECCSSCCS-SCCSSC---CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCEEEeCCCCcC-ccCccC---CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence            368899999888 788765   45689999999999877777777 8999999999999998777778888999999999


Q ss_pred             CccccccccccCCcchhcCCCCCcEEEcCCCCCCCC-cccccCCCCCceeeCcCccccccCchhc---cCCCCCCEEEcc
Q 036258          136 GHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTI-PNSITNASELTLLELGKNSFSGLVPNTF---GNLRFLSLLDLG  211 (331)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~l---~~~~~L~~L~l~  211 (331)
                      ++|....    ++...+..+++|++|++++|.+..+ +..|..+++|++|++++|.+....+..+   ..+++|++|+++
T Consensus        96 s~N~l~~----~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~  171 (361)
T 2xot_A           96 SSNHLHT----LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLS  171 (361)
T ss_dssp             CSSCCCE----ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECC
T ss_pred             CCCcCCc----CCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECC
Confidence            7766553    3444455788899999988888855 4678888888999998888886655555   567888888888


Q ss_pred             CCcccCccCCCccccccccccCCC--CcEEEeeccccc
Q 036258          212 NNYLTTRSSTTEWSFLSSLTNCIY--LKVLGLHSNQLS  247 (331)
Q Consensus       212 ~~~l~~~~~~~~~~~~~~~~~~~~--L~~L~l~~n~~~  247 (331)
                      +|.+..++       +..+..++.  ++.|++.+|.+.
T Consensus       172 ~N~l~~l~-------~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          172 SNKLKKLP-------LTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             SSCCCCCC-------HHHHHHSCHHHHTTEECCSSCEE
T ss_pred             CCCCCccC-------HHHhhhccHhhcceEEecCCCcc
Confidence            88887643       223555655  477888888765

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.76  E-value=6.4e-20  Score=171.60  Aligned_cols=263  Identities=13%  Similarity=0.085  Sum_probs=145.6

Q ss_pred             cCCCCccEEEcCCCcCccCC---ChhhhcCCCCCcEEEccCCccc----ccCCccCcCCCCCCEEEccCccccccCCccc
Q 036258           52 YNISSLKMIRLSSNSLSGSL---PNDLCNRLPSLEQLVLRSNGFF----GQIPLSLSKCTQLQHLWLEHNKFTGRLPENI  124 (331)
Q Consensus        52 ~~~~~L~~L~l~~~~i~~~~---~~~~~~~~~~L~~L~L~~n~i~----~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~  124 (331)
                      .++++|++|++++|.+.+.-   ...++..+++|++|++++|.+.    ..++..+..+++|++|++++|.+.+ ++..+
T Consensus       161 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~  239 (592)
T 3ogk_B          161 THCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFF  239 (592)
T ss_dssp             HHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHH
T ss_pred             hhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHH
Confidence            36678888888888765331   1123356778888888877765    2333334567888888888877663 55666


Q ss_pred             cCcccccccccCccccccccccCCc----------------------chhcCCCCCcEEEcCCCCCC--CCcccccCCCC
Q 036258          125 GNLSKLRSLVLGHKAHNSLHGHLPS----------------------TLSVSLPNLKWLALGMNKLR--TIPNSITNASE  180 (331)
Q Consensus       125 ~~l~~L~~L~l~~~~~~~~~~~~~~----------------------~~~~~l~~L~~L~l~~~~l~--~~~~~~~~l~~  180 (331)
                      ..+++|++|+++.............                      ..+..+++|++|++++|.+.  .+...+..+++
T Consensus       240 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~  319 (592)
T 3ogk_B          240 KAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPN  319 (592)
T ss_dssp             HHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTT
T ss_pred             hhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcC
Confidence            6677777777653111100001111                      11223445555555554433  11122344455


Q ss_pred             CceeeCcCccccccCchhccCCCCCCEEEccC-----------CcccCccCCCccccccccccCCCCcEEEeeccccccc
Q 036258          181 LTLLELGKNSFSGLVPNTFGNLRFLSLLDLGN-----------NYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGI  249 (331)
Q Consensus       181 L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~-----------~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  249 (331)
                      |++|+++++......+.....+++|++|++++           +.++..      .+......+++|++|++..+.+++.
T Consensus       320 L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~------~~~~l~~~~~~L~~L~l~~~~l~~~  393 (592)
T 3ogk_B          320 LEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQR------GLIALAQGCQELEYMAVYVSDITNE  393 (592)
T ss_dssp             CCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHH------HHHHHHHHCTTCSEEEEEESCCCHH
T ss_pred             CCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHH------HHHHHHhhCccCeEEEeecCCccHH
Confidence            55555542211111222233455566666662           223221      1222234577788888877777766


Q ss_pred             CCchhhhccccccEEEec----cCccccc-----CCccccCCCCCCEEEccCCC--CcccCCcCcc-CCCCCCeEeccCC
Q 036258          250 LPPLIGNFSDSLQQFYAY----DCELKGS-----IPQEIGNLNGLIDLRLQDND--LNGTIPTTVG-RLQQLQGLFLFGN  317 (331)
Q Consensus       250 ~~~~~~~~~~~L~~L~l~----~~~~~~~-----~~~~l~~l~~L~~L~l~~n~--l~~~~~~~l~-~l~~L~~L~l~~n  317 (331)
                      .+..+....++|+.|+++    .+.+++.     ++..+.++++|+.|+++.|.  +++..+..+. .+++|++|++++|
T Consensus       394 ~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n  473 (592)
T 3ogk_B          394 SLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV  473 (592)
T ss_dssp             HHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC
T ss_pred             HHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC
Confidence            666666534478888886    4455532     23335668888888886543  5543333333 4788999999999


Q ss_pred             eeee
Q 036258          318 NLQG  321 (331)
Q Consensus       318 ~~~~  321 (331)
                      .+++
T Consensus       474 ~l~~  477 (592)
T 3ogk_B          474 GESD  477 (592)
T ss_dssp             CSSH
T ss_pred             CCCH
Confidence            8875

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.75  E-value=3.9e-18  Score=147.79  Aligned_cols=248  Identities=14%  Similarity=0.127  Sum_probs=156.8

Q ss_pred             CCCccEEEcCCCcCcc-------------------CCChhhhcC--------CCCCcEEEccCCcccccCCccCcCCCCC
Q 036258           54 ISSLKMIRLSSNSLSG-------------------SLPNDLCNR--------LPSLEQLVLRSNGFFGQIPLSLSKCTQL  106 (331)
Q Consensus        54 ~~~L~~L~l~~~~i~~-------------------~~~~~~~~~--------~~~L~~L~L~~n~i~~~~~~~~~~l~~L  106 (331)
                      +++|++|||++|.+..                   .+|+..|.+        +++|+.+++.+ .+..+.+.+|.++++|
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L  126 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL  126 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence            6889999999998761                   355566666        77777777777 5665666667777777


Q ss_pred             CEEEccCccccccCCccccCcccccccccCccccccccccCCcchhcCCCCCc-EEEcCCCCCCCCcccc----cCCCCC
Q 036258          107 QHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLK-WLALGMNKLRTIPNSI----TNASEL  181 (331)
Q Consensus       107 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~-~L~l~~~~l~~~~~~~----~~l~~L  181 (331)
                      +.+++.+|.+....+.+|.++.++..+.............+....|..+..|+ .+.+....  .++..+    ....++
T Consensus       127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~--~l~~~~~~~~~~~~~~  204 (329)
T 3sb4_A          127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMG--KLEDEIMKAGLQPRDI  204 (329)
T ss_dssp             CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTC--CHHHHHHHTTCCGGGC
T ss_pred             ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCC--cHHHHHhhcccCcccc
Confidence            77777777666555566666666665555321111111122333344455555 33333221  122111    123444


Q ss_pred             ceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccc
Q 036258          182 TLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSL  261 (331)
Q Consensus       182 ~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L  261 (331)
                      ..+.+.++-...........+++|+.++++.|.++.++..       .|.++++|+++++.+| +....+.+|.... +|
T Consensus       205 ~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~-------aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~-~L  275 (329)
T 3sb4_A          205 NFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDF-------TFAQKKYLLKIKLPHN-LKTIGQRVFSNCG-RL  275 (329)
T ss_dssp             SEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTT-------TTTTCTTCCEEECCTT-CCEECTTTTTTCT-TC
T ss_pred             ceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHh-------hhhCCCCCCEEECCcc-cceehHHHhhCCh-hc
Confidence            5555544322111111112367899999998888876544       3888888999999887 6644455555554 78


Q ss_pred             c-EEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEec
Q 036258          262 Q-QFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFL  314 (331)
Q Consensus       262 ~-~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l  314 (331)
                      + .+++.+ .++...+.+|.+|++|+.+++.+|.+....+.+|.++++|+.++.
T Consensus       276 ~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          276 AGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             CEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             cEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            8 888887 666666788999999999999999998666678999999998864

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.74  E-value=1e-17  Score=134.14  Aligned_cols=153  Identities=18%  Similarity=0.224  Sum_probs=94.2

Q ss_pred             hcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccc
Q 036258           51 FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKL  130 (331)
Q Consensus        51 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L  130 (331)
                      ...+++|++|++++|.+. .+| .+ ..+++|++|++++|.+.  .+..+..+++|++|++++|.+++..+..+..+++|
T Consensus        40 ~~~l~~L~~L~l~~n~i~-~l~-~l-~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  114 (197)
T 4ezg_A           40 EAQMNSLTYITLANINVT-DLT-GI-EYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL  114 (197)
T ss_dssp             HHHHHTCCEEEEESSCCS-CCT-TG-GGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred             hhhcCCccEEeccCCCcc-ChH-HH-hcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence            366788999999999988 777 44 77899999999999765  23467888999999999998886667777777777


Q ss_pred             cccccCccccccccccCCcchhcCCCCCcEEEcCCCC-CCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEE
Q 036258          131 RSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNK-LRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLD  209 (331)
Q Consensus       131 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~  209 (331)
                      ++|++++|....   ..+.. +..+++|++|++++|. +..++ .+..+++|++|++++|.+.+. + .+..+++|++|+
T Consensus       115 ~~L~Ls~n~i~~---~~~~~-l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~  187 (197)
T 4ezg_A          115 TLLDISHSAHDD---SILTK-INTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLY  187 (197)
T ss_dssp             CEEECCSSBCBG---GGHHH-HTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEE
T ss_pred             CEEEecCCccCc---HhHHH-HhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEE
Confidence            777775444332   11121 2245555555555554 44443 344445555555555544432 1 334444444444


Q ss_pred             ccCCcc
Q 036258          210 LGNNYL  215 (331)
Q Consensus       210 l~~~~l  215 (331)
                      +++|.+
T Consensus       188 l~~N~i  193 (197)
T 4ezg_A          188 AFSQTI  193 (197)
T ss_dssp             ECBC--
T ss_pred             eeCccc
Confidence            444443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.73  E-value=1.8e-17  Score=138.86  Aligned_cols=168  Identities=22%  Similarity=0.243  Sum_probs=78.1

Q ss_pred             CCCCCEEEccCccccccCCccccCcccccccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCc
Q 036258          103 CTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELT  182 (331)
Q Consensus       103 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~  182 (331)
                      +.++..++++++.++. ++ .+..+++|++|+++++....+    + . +..+++|++|++++|.+..++. +..+++|+
T Consensus        18 l~~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~~l----~-~-l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~   88 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQSL----A-G-MQFFTNLKELHLSHNQISDLSP-LKDLTKLE   88 (263)
T ss_dssp             HHHHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCCCC----T-T-GGGCTTCCEEECCSSCCCCCGG-GTTCSSCC
T ss_pred             HHHHHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCcccc----h-H-HhhCCCCCEEECCCCccCCChh-hccCCCCC
Confidence            3444555555555542 22 344555555555544433322    1 1 1244555555555555554443 45555555


Q ss_pred             eeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhcccccc
Q 036258          183 LLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQ  262 (331)
Q Consensus       183 ~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~  262 (331)
                      +|++++|.+.+..+  +.. ++|++|++++|.+..+         ..+..+++|++|++++|.+.+. + .+..+. +|+
T Consensus        89 ~L~L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~---------~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~-~L~  153 (263)
T 1xeu_A           89 ELSVNRNRLKNLNG--IPS-ACLSRLFLDNNELRDT---------DSLIHLKNLEILSIRNNKLKSI-V-MLGFLS-KLE  153 (263)
T ss_dssp             EEECCSSCCSCCTT--CCC-SSCCEEECCSSCCSBS---------GGGTTCTTCCEEECTTSCCCBC-G-GGGGCT-TCC
T ss_pred             EEECCCCccCCcCc--ccc-CcccEEEccCCccCCC---------hhhcCcccccEEECCCCcCCCC-h-HHccCC-CCC
Confidence            55555555543211  111 4555555555555432         1244455555555555555432 1 233333 555


Q ss_pred             EEEeccCcccccCCccccCCCCCCEEEccCCCCc
Q 036258          263 QFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLN  296 (331)
Q Consensus       263 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~  296 (331)
                      .|++++|.+.+.  ..+..+++|+.|++++|++.
T Consensus       154 ~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          154 VLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             EEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred             EEECCCCcCcch--HHhccCCCCCEEeCCCCccc
Confidence            555555555432  34444555555555555544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.73  E-value=1.7e-20  Score=173.37  Aligned_cols=204  Identities=21%  Similarity=0.207  Sum_probs=118.8

Q ss_pred             cCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCcc-------------ccccCCccccCcccccccc-cCcccccc
Q 036258           77 NRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNK-------------FTGRLPENIGNLSKLRSLV-LGHKAHNS  142 (331)
Q Consensus        77 ~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~-------------~~~~~~~~~~~l~~L~~L~-l~~~~~~~  142 (331)
                      ..+++|+.|+|++|.+. .+|..++.+++|+.|++++|.             ..+..|..+..+++|+.|+ ++.|... 
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-  423 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-  423 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence            45788888888888886 678888888888888887664             3445666777788888887 5433221 


Q ss_pred             ccccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCC
Q 036258          143 LHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTT  222 (331)
Q Consensus       143 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~  222 (331)
                                    +|..+.+.+|.+..++.     ..|+.|++++|.+.+. |. +..+++|++|++++|.++.     
T Consensus       424 --------------~L~~l~l~~n~i~~l~~-----~~L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N~l~~-----  477 (567)
T 1dce_A          424 --------------DLRSKFLLENSVLKMEY-----ADVRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHNRLRA-----  477 (567)
T ss_dssp             --------------HHHHHHHHHHHHHHHHH-----TTCSEEECTTSCCSSC-CC-GGGGTTCCEEECCSSCCCC-----
T ss_pred             --------------hhhhhhhhcccccccCc-----cCceEEEecCCCCCCC-cC-ccccccCcEeecCcccccc-----
Confidence                          12222222222222111     1245555555555432 33 5555555555555555552     


Q ss_pred             ccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccC-CccccCCCCCCEEEccCCCCcccCCc
Q 036258          223 EWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSI-PQEIGNLNGLIDLRLQDNDLNGTIPT  301 (331)
Q Consensus       223 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~  301 (331)
                         +|..+..+++|++|++++|.+++ +| .+..++ +|+.|++++|.+++.. |..+..+++|+.|++++|++++..+.
T Consensus       478 ---lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~-~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~  551 (567)
T 1dce_A          478 ---LPPALAALRCLEVLQASDNALEN-VD-GVANLP-RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI  551 (567)
T ss_dssp             ---CCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCS-SCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred             ---cchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCC-CCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence               23345555556666666666553 33 444444 6666666666666544 67777777777777777777743322


Q ss_pred             C---ccCCCCCCeEec
Q 036258          302 T---VGRLQQLQGLFL  314 (331)
Q Consensus       302 ~---l~~l~~L~~L~l  314 (331)
                      .   +..+|+|+.|++
T Consensus       552 ~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          552 QERLAEMLPSVSSILT  567 (567)
T ss_dssp             TTHHHHHCTTCSEEEC
T ss_pred             HHHHHHHCcccCccCC
Confidence            1   223677777653

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.73  E-value=6.9e-17  Score=141.69  Aligned_cols=176  Identities=23%  Similarity=0.257  Sum_probs=138.6

Q ss_pred             cccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCc-cccc-CCCCCceeeCcCccccccCchhccCCCCCCEE
Q 036258          131 RSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIP-NSIT-NASELTLLELGKNSFSGLVPNTFGNLRFLSLL  208 (331)
Q Consensus       131 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~~-~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L  208 (331)
                      +.++++++....    +|..+   .+.+++|++++|.++.++ ..+. .+++|+.|++++|.+....+..|..+++|++|
T Consensus        21 ~~l~c~~~~l~~----iP~~~---~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L   93 (361)
T 2xot_A           21 NILSCSKQQLPN----VPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYL   93 (361)
T ss_dssp             TEEECCSSCCSS----CCSSC---CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             CEEEeCCCCcCc----cCccC---CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEE
Confidence            467776555543    34432   246899999999998765 4455 88999999999999998888889999999999


Q ss_pred             EccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccc---cCCCCC
Q 036258          209 DLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEI---GNLNGL  285 (331)
Q Consensus       209 ~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l---~~l~~L  285 (331)
                      ++++|.+..++       +..+..+++|++|+|++|.+.+..+..+..+. +|+.|+|++|.+....+..+   ..+++|
T Consensus        94 ~Ls~N~l~~~~-------~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~-~L~~L~L~~N~l~~l~~~~~~~~~~l~~L  165 (361)
T 2xot_A           94 DLSSNHLHTLD-------EFLFSDLQALEVLLLYNNHIVVVDRNAFEDMA-QLQKLYLSQNQISRFPVELIKDGNKLPKL  165 (361)
T ss_dssp             ECCSSCCCEEC-------TTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCCSCCGGGTC----CTTC
T ss_pred             ECCCCcCCcCC-------HHHhCCCcCCCEEECCCCcccEECHHHhCCcc-cCCEEECCCCcCCeeCHHHhcCcccCCcC
Confidence            99999988643       33478899999999999999977788888777 99999999999985333344   568999


Q ss_pred             CEEEccCCCCcccCCcCccCCCC--CCeEeccCCeeee
Q 036258          286 IDLRLQDNDLNGTIPTTVGRLQQ--LQGLFLFGNNLQG  321 (331)
Q Consensus       286 ~~L~l~~n~l~~~~~~~l~~l~~--L~~L~l~~n~~~~  321 (331)
                      +.|++++|.+++..+..+..++.  ++.|++++|++.-
T Consensus       166 ~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          166 MLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             CEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred             CEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence            99999999999444456677776  4889999999873

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.72  E-value=8.9e-18  Score=140.69  Aligned_cols=167  Identities=23%  Similarity=0.336  Sum_probs=92.4

Q ss_pred             ccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccccC
Q 036258           57 LKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLG  136 (331)
Q Consensus        57 L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  136 (331)
                      ++.++++++.++ .++ . +..+++|++|++++|.+. .++ .+..+++|++|++++|.+++..+  +..+++|++|+++
T Consensus        21 l~~l~l~~~~i~-~~~-~-~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~   93 (263)
T 1xeu_A           21 AVKQNLGKQSVT-DLV-S-QKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHTCSCTT-SEE-C-HHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred             HHHHHhcCCCcc-ccc-c-hhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence            334444444444 332 1 133455555555555443 222 34445555555555555442222  4445555555554


Q ss_pred             ccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCccc
Q 036258          137 HKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLT  216 (331)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~  216 (331)
                      +|....+..     .. . ++|++|++++|.++.++ .+..+++|+.|++++|.+.+. + .+..+++|++|++++|.+.
T Consensus        94 ~N~l~~l~~-----~~-~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~  163 (263)
T 1xeu_A           94 RNRLKNLNG-----IP-S-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEIT  163 (263)
T ss_dssp             SSCCSCCTT-----CC-C-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCC
T ss_pred             CCccCCcCc-----cc-c-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCc
Confidence            444332211     11 1 56777777777776654 466777777777777777654 2 4667777777777777776


Q ss_pred             CccCCCccccccccccCCCCcEEEeeccccccc
Q 036258          217 TRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGI  249 (331)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  249 (331)
                      ..         ..+..+++|+.|++++|.+...
T Consensus       164 ~~---------~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          164 NT---------GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             BC---------TTSTTCCCCCEEEEEEEEEECC
T ss_pred             ch---------HHhccCCCCCEEeCCCCcccCC
Confidence            53         3366777788888887777644

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.71  E-value=8.6e-16  Score=136.10  Aligned_cols=262  Identities=13%  Similarity=0.141  Sum_probs=195.8

Q ss_pred             ccCCCCCCCcchhcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccc
Q 036258           39 IADPYSVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTG  118 (331)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~  118 (331)
                      +++....++..+|.++ +|+.+.+..+ ++ .++...|..+ +|+.+.+.. .+..+.+.+|.++++|+.+++.+|.++.
T Consensus       120 ip~~i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~  194 (401)
T 4fdw_A          120 LPNSVKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITK  194 (401)
T ss_dssp             CCTTCCEECTTTTTTC-CCSEEECCTT-CC-EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSE
T ss_pred             ECCccCEehHhhcccC-CccEEEeCCC-cc-EECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceE
Confidence            3456677777889985 7999999766 66 7888888875 799999986 5666777889999999999999998885


Q ss_pred             cCCccccCcccccccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCc-ccccCCCCCceeeCcCccccccCch
Q 036258          119 RLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIP-NSITNASELTLLELGKNSFSGLVPN  197 (331)
Q Consensus       119 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~  197 (331)
                      ....+|. ..+|+.+.+..+     ...+...+|..+++|+.+.+..+ +..++ .+|.. .+|+.+.+. +.+..+...
T Consensus       195 I~~~aF~-~~~L~~l~lp~~-----l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~  265 (401)
T 4fdw_A          195 LPASTFV-YAGIEEVLLPVT-----LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASR  265 (401)
T ss_dssp             ECTTTTT-TCCCSEEECCTT-----CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTT
T ss_pred             echhhEe-ecccCEEEeCCc-----hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChh
Confidence            5455555 688999988532     23566777888999999999864 55554 55655 789999984 446667778


Q ss_pred             hccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCc
Q 036258          198 TFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQ  277 (331)
Q Consensus       198 ~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  277 (331)
                      +|.++++|+.+.+.++.+......  .-....|.++++|+.+.+.+ .+......+|.... +|+.+.+..+ ++.....
T Consensus       266 aF~~c~~L~~l~l~~~~~~~~~~~--~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~-~L~~l~lp~~-l~~I~~~  340 (401)
T 4fdw_A          266 AFYYCPELAEVTTYGSTFNDDPEA--MIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNR-KVTQLTIPAN-VTQINFS  340 (401)
T ss_dssp             TTTTCTTCCEEEEESSCCCCCTTC--EECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCC-SCCEEEECTT-CCEECTT
T ss_pred             HhhCCCCCCEEEeCCccccCCccc--EECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCC-CccEEEECcc-ccEEcHH
Confidence            999999999999988766511000  01234588999999999984 46644455555544 9999999654 6656678


Q ss_pred             cccCCCCCCEEEccCCCCcccCCcCccCCC-CCCeEeccCCeee
Q 036258          278 EIGNLNGLIDLRLQDNDLNGTIPTTVGRLQ-QLQGLFLFGNNLQ  320 (331)
Q Consensus       278 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~l~~n~~~  320 (331)
                      +|.++ +|+.+.+.+|.+.......|..++ .++.+++-.+.+.
T Consensus       341 aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          341 AFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             SSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred             hCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence            89999 999999999988755566777775 6888888776543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.71  E-value=2.2e-20  Score=172.69  Aligned_cols=196  Identities=22%  Similarity=0.211  Sum_probs=144.2

Q ss_pred             cCCCCCCEEEccCccccccCCccccCcccccccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCC
Q 036258          101 SKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASE  180 (331)
Q Consensus       101 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~  180 (331)
                      ...++|+.|++++|.++ .+|..+.++++|+.|+++++..-   ..++..       +..+    +.....|..+..+++
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l---~~l~~l-------l~~~----~~~~~~~~~l~~l~~  410 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCL---LTIILL-------MRAL----DPLLYEKETLQYFST  410 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHH---HHHHHH-------HHHH----CTGGGHHHHHHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhh---hhHHHH-------HHhc----ccccCCHHHHHHHHh
Confidence            56899999999999998 78999999999999998554310   000000       0000    011133455555556


Q ss_pred             Cceee-CcCccccccCc-----hhccC--CCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCc
Q 036258          181 LTLLE-LGKNSFSGLVP-----NTFGN--LRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPP  252 (331)
Q Consensus       181 L~~L~-l~~n~~~~~~~-----~~l~~--~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~  252 (331)
                      |+.|+ ++.|.+.....     ..+..  ...|+.|++++|.++.+        +. +..+++|+.|++++|.+. .+|.
T Consensus       411 L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~l--------p~-~~~l~~L~~L~Ls~N~l~-~lp~  480 (567)
T 1dce_A          411 LKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL--------CH-LEQLLLVTHLDLSHNRLR-ALPP  480 (567)
T ss_dssp             HHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSC--------CC-GGGGTTCCEEECCSSCCC-CCCG
T ss_pred             cccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCC--------cC-ccccccCcEeecCccccc-ccch
Confidence            66655 34333221100     00111  12599999999999863        44 889999999999999998 8888


Q ss_pred             hhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCcccC-CcCccCCCCCCeEeccCCeeeecCC
Q 036258          253 LIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTI-PTTVGRLQQLQGLFLFGNNLQGSIP  324 (331)
Q Consensus       253 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~~~~~~p  324 (331)
                      .+..+. +|+.|+|++|.+++ +| .+..+++|+.|++++|.+++.. |..+..+++|+.|++++|++++..|
T Consensus       481 ~~~~l~-~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          481 ALAALR-CLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             GGGGCT-TCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             hhhcCC-CCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence            888887 99999999999995 77 8999999999999999999665 8999999999999999999995443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.71  E-value=2.6e-19  Score=167.46  Aligned_cols=135  Identities=21%  Similarity=0.232  Sum_probs=76.4

Q ss_pred             hcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCC-ccccc-CCccCcCCCCCCEEEccCccccccCCccc----
Q 036258           51 FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSN-GFFGQ-IPLSLSKCTQLQHLWLEHNKFTGRLPENI----  124 (331)
Q Consensus        51 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n-~i~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~----  124 (331)
                      +..+++|++|+++++.+++..+..+...+++|++|++++| .+... ++..+..+++|++|++++|.+++..+..+    
T Consensus       101 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~  180 (594)
T 2p1m_B          101 SSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP  180 (594)
T ss_dssp             HHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred             HHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence            3456778888888877765444444335778888888877 33321 23333467788888888877664333333    


Q ss_pred             cCcccccccccCccccccccccCCcchhcCCCCCcEEEcCCC-CCCCCcccccCCCCCceeeC
Q 036258          125 GNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMN-KLRTIPNSITNASELTLLEL  186 (331)
Q Consensus       125 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~~~~~~~~l~~L~~L~l  186 (331)
                      ..+++|++|+++++. ..+.......+...+++|++|++.+| .+..++..+..+++|++|++
T Consensus       181 ~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l  242 (594)
T 2p1m_B          181 DTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGT  242 (594)
T ss_dssp             TTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEEC
T ss_pred             hcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEccc
Confidence            355678888876554 12221212222234677777777766 22233333444444444443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.70  E-value=1e-17  Score=159.53  Aligned_cols=215  Identities=22%  Similarity=0.185  Sum_probs=84.7

Q ss_pred             CCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccc---------cCCccCcCCCCCCEEEccCccccccCCcccc
Q 036258           55 SSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFG---------QIPLSLSKCTQLQHLWLEHNKFTGRLPENIG  125 (331)
Q Consensus        55 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~---------~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~  125 (331)
                      ++++.|++.++.+. .++...      ++.++|+.+.+.+         ..+..+..++.|+.|+|++|.+. .+|..+.
T Consensus       173 ~~~~~l~L~~n~~~-~~~~~~------l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~  244 (727)
T 4b8c_D          173 PLTPKIELFANGKD-EANQAL------LQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIF  244 (727)
T ss_dssp             --------------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGG
T ss_pred             CccceEEeeCCCCC-cchhhH------hhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhc
Confidence            45777778777766 444333      2333333333221         33444555555555555555554 3333333


Q ss_pred             CcccccccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCC
Q 036258          126 NLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFL  205 (331)
Q Consensus       126 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L  205 (331)
                                                  .+++|++|+|++|.++.+|..+..+++|+.|++++|.+. .+|..+..+++|
T Consensus       245 ----------------------------~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L  295 (727)
T 4b8c_D          245 ----------------------------KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQL  295 (727)
T ss_dssp             ----------------------------GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTC
T ss_pred             ----------------------------CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCC
Confidence                                        445555555556666666666666666666666666666 445566666667


Q ss_pred             CEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCC
Q 036258          206 SLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGL  285 (331)
Q Consensus       206 ~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L  285 (331)
                      ++|+|++|.+..        ++..+..+++|++|+|++|.+.+.+|..+.........+++.+|.+.+.+|..+      
T Consensus       296 ~~L~L~~N~l~~--------lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l------  361 (727)
T 4b8c_D          296 KYFYFFDNMVTT--------LPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHER------  361 (727)
T ss_dssp             SEEECCSSCCCC--------CCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-------
T ss_pred             CEEECCCCCCCc--------cChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcccc------
Confidence            777777766653        344466677777777777777666666655443233345667777766665543      


Q ss_pred             CEEEccCC--------CCcccCCcCccCCCCCCeEeccCCeee
Q 036258          286 IDLRLQDN--------DLNGTIPTTVGRLQQLQGLFLFGNNLQ  320 (331)
Q Consensus       286 ~~L~l~~n--------~l~~~~~~~l~~l~~L~~L~l~~n~~~  320 (331)
                      ..|+++.|        .+.+..+..+..++.+....+++|-+.
T Consensus       362 ~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~  404 (727)
T 4b8c_D          362 RFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC  404 (727)
T ss_dssp             ----------------------------------------CCC
T ss_pred             ceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence            34444444        222222223334444555555555554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.69  E-value=3.3e-19  Score=166.77  Aligned_cols=167  Identities=14%  Similarity=0.179  Sum_probs=112.1

Q ss_pred             CcchhcCCCCccEEEcCCCcCccCC---C-----------hhhhcCCCCCcEEEccCCcccccCCccCc-CCCCCCEEEc
Q 036258           47 TKNCFYNISSLKMIRLSSNSLSGSL---P-----------NDLCNRLPSLEQLVLRSNGFFGQIPLSLS-KCTQLQHLWL  111 (331)
Q Consensus        47 ~~~~~~~~~~L~~L~l~~~~i~~~~---~-----------~~~~~~~~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~l  111 (331)
                      +...+.++++|++|+++++.....+   |           ..++..+++|++|++++|.+.+..+..+. .+++|++|++
T Consensus        58 ~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L  137 (594)
T 2p1m_B           58 PATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVL  137 (594)
T ss_dssp             HHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEE
T ss_pred             HHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeC
Confidence            3345778899999999997532121   1           23345789999999999988765555554 6899999999


Q ss_pred             cCc-ccccc-CCccccCcccccccccCccccccccccCCcchhcCCCCCcEEEcCCCC--CC--CCcccccCCCCCceee
Q 036258          112 EHN-KFTGR-LPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNK--LR--TIPNSITNASELTLLE  185 (331)
Q Consensus       112 ~~n-~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--l~--~~~~~~~~l~~L~~L~  185 (331)
                      ++| .++.. ++.....+++|++|+++++............+...+++|++|+++++.  +.  .++..+..+++|++|+
T Consensus       138 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~  217 (594)
T 2p1m_B          138 SSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLK  217 (594)
T ss_dssp             ESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEE
T ss_pred             CCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEe
Confidence            998 55422 334445789999999987665443322233334478899999999887  22  1223345579999999


Q ss_pred             CcCccccccCchhccCCCCCCEEEccCC
Q 036258          186 LGKNSFSGLVPNTFGNLRFLSLLDLGNN  213 (331)
Q Consensus       186 l~~n~~~~~~~~~l~~~~~L~~L~l~~~  213 (331)
                      +++|......+..+..+++|++|+++.+
T Consensus       218 L~~~~~~~~l~~~~~~~~~L~~L~l~~~  245 (594)
T 2p1m_B          218 LNRAVPLEKLATLLQRAPQLEELGTGGY  245 (594)
T ss_dssp             CCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred             cCCCCcHHHHHHHHhcCCcceEcccccc
Confidence            9998322224455555666666665443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.69  E-value=2.1e-16  Score=123.18  Aligned_cols=138  Identities=22%  Similarity=0.182  Sum_probs=103.6

Q ss_pred             CCCceeeCcCcccc-ccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhc
Q 036258          179 SELTLLELGKNSFS-GLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNF  257 (331)
Q Consensus       179 ~~L~~L~l~~n~~~-~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~  257 (331)
                      ++|++|++++|.+. +..|..+..+++|++|++++|.+..+         ..+..+++|++|++++|.+.+.+|..+..+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l   94 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---------SNLPKLPKLKKLELSENRIFGGLDMLAEKL   94 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---------SSCCCCSSCCEEEEESCCCCSCCCHHHHHC
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---------hhhccCCCCCEEECcCCcCchHHHHHHhhC
Confidence            56677777777665 34555566777777788877777653         346778888888888888876666666656


Q ss_pred             cccccEEEeccCccccc-CCccccCCCCCCEEEccCCCCcccCC---cCccCCCCCCeEeccCCeeeecCCccc
Q 036258          258 SDSLQQFYAYDCELKGS-IPQEIGNLNGLIDLRLQDNDLNGTIP---TTVGRLQQLQGLFLFGNNLQGSIPSDL  327 (331)
Q Consensus       258 ~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~l~~n~~~~~~p~~~  327 (331)
                      + +|++|++++|.+++. .+..+..+++|+.|++++|++++..+   ..+..+++|++|++++|.+. .+|+.-
T Consensus        95 ~-~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~  166 (168)
T 2ell_A           95 P-NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDSD  166 (168)
T ss_dssp             T-TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSSS
T ss_pred             C-CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccccc
Confidence            5 888888888888743 22678889999999999999984433   37888999999999999988 777654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.67  E-value=7.9e-16  Score=122.60  Aligned_cols=131  Identities=24%  Similarity=0.313  Sum_probs=100.6

Q ss_pred             CcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCch-hccCCCCCCEEEccCCcccCccCCCccccccccccCCCC
Q 036258          158 LKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPN-TFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYL  236 (331)
Q Consensus       158 L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L  236 (331)
                      -+++++++++++.+|..+.  ..+++|++++|.+.+..+. .+..+++|++|++++|.++.+       .+..+..+++|
T Consensus        10 ~~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-------~~~~~~~l~~L   80 (192)
T 1w8a_A           10 GTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-------EPNAFEGASHI   80 (192)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-------CTTTTTTCTTC
T ss_pred             CCEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCc-------CHhHcCCcccC
Confidence            3678888888888886554  3888888888888766553 477888888888888888763       34457788888


Q ss_pred             cEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCccc
Q 036258          237 KVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGT  298 (331)
Q Consensus       237 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~  298 (331)
                      ++|++++|.+.+..+..+..++ +|++|++++|.+++..|..+..+++|+.|++++|++.+.
T Consensus        81 ~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A           81 QELQLGENKIKEISNKMFLGLH-QLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             CEEECCSCCCCEECSSSSTTCT-TCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             CEEECCCCcCCccCHHHhcCCC-CCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence            8888888888876666666665 788888888888877777788888888888888887743

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.65  E-value=4.6e-17  Score=155.00  Aligned_cols=152  Identities=24%  Similarity=0.225  Sum_probs=114.9

Q ss_pred             cchhcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCcccccc
Q 036258          149 STLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLS  228 (331)
Q Consensus       149 ~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~  228 (331)
                      ...+..+++|+.|++++|.+..+|..+..+++|++|++++|.+. .+|..+..+++|++|+|++|.++.        +|.
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~--------lp~  287 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS--------LPA  287 (727)
T ss_dssp             -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSS--------CCS
T ss_pred             hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCc--------cCh
Confidence            34445788999999999999988887888999999999999998 667888999999999999999885        455


Q ss_pred             ccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCC-CCEEEccCCCCcccCCcCccCCC
Q 036258          229 SLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNG-LIDLRLQDNDLNGTIPTTVGRLQ  307 (331)
Q Consensus       229 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~~n~l~~~~~~~l~~l~  307 (331)
                      .+..+++|++|+|++|.+. .+|..+..+. +|+.|+|++|.+.+.+|..+..+.. +..+++++|.+++.+|..+    
T Consensus       288 ~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l----  361 (727)
T 4b8c_D          288 ELGSCFQLKYFYFFDNMVT-TLPWEFGNLC-NLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHER----  361 (727)
T ss_dssp             SGGGGTTCSEEECCSSCCC-CCCSSTTSCT-TCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-----
T ss_pred             hhcCCCCCCEEECCCCCCC-ccChhhhcCC-CccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcccc----
Confidence            6888999999999999987 7787787776 9999999999998877777655432 2346788999887776644    


Q ss_pred             CCCeEeccCC
Q 036258          308 QLQGLFLFGN  317 (331)
Q Consensus       308 ~L~~L~l~~n  317 (331)
                        +.|+++.|
T Consensus       362 --~~l~l~~n  369 (727)
T 4b8c_D          362 --RFIEINTD  369 (727)
T ss_dssp             ----------
T ss_pred             --ceeEeecc
Confidence              44555555

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.65  E-value=2.8e-14  Score=126.42  Aligned_cols=244  Identities=14%  Similarity=0.165  Sum_probs=187.8

Q ss_pred             hcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccc
Q 036258           51 FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKL  130 (331)
Q Consensus        51 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L  130 (331)
                      +..+..++.+.+-+ .++ .|+...|..+ +|+.+.+..+ +..+...+|.++ +|+.+.+.. .+......+|.++++|
T Consensus       109 ~~~~~~l~~i~ip~-~i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L  182 (401)
T 4fdw_A          109 TEILKGYNEIILPN-SVK-SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNL  182 (401)
T ss_dssp             EEECSSCSEEECCT-TCC-EECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTC
T ss_pred             EEecCCccEEEECC-ccC-EehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccC
Confidence            44457788888854 465 7888888875 7999999876 666667778774 799999986 5665666889999999


Q ss_pred             cccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCc-ccccCCCCCceeeCcCccccccCchhccCCCCCCEEE
Q 036258          131 RSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIP-NSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLD  209 (331)
Q Consensus       131 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~  209 (331)
                      +.+++..|....    ++..+| ...+|+.+.+..+ +..++ .+|..+++|+.+.+..+ +..+...+|.+ .+|+.+.
T Consensus       183 ~~l~l~~n~l~~----I~~~aF-~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~  254 (401)
T 4fdw_A          183 KKADLSKTKITK----LPASTF-VYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVK  254 (401)
T ss_dssp             CEEECTTSCCSE----ECTTTT-TTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEE
T ss_pred             CeeecCCCcceE----echhhE-eecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEE
Confidence            999997665553    455666 3689999999854 66554 77889999999999875 55566778887 6899999


Q ss_pred             ccCCcccCccCCCccccccccccCCCCcEEEeeccccc-----ccCCchhhhccccccEEEeccCcccccCCccccCCCC
Q 036258          210 LGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLS-----GILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNG  284 (331)
Q Consensus       210 l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~-----~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~  284 (331)
                      +.. .++.++       ..+|.++++|+.+.+.++.+.     ...+.+|.... +|+.+.+.+ .+......+|.+|.+
T Consensus       255 lp~-~i~~I~-------~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~-~L~~l~l~~-~i~~I~~~aF~~c~~  324 (401)
T 4fdw_A          255 LPN-GVTNIA-------SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCP-KLARFEIPE-SIRILGQGLLGGNRK  324 (401)
T ss_dssp             EET-TCCEEC-------TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCT-TCCEECCCT-TCCEECTTTTTTCCS
T ss_pred             eCC-CccEEC-------hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCc-cCCeEEeCC-ceEEEhhhhhcCCCC
Confidence            954 455543       345999999999999987764     23444555544 999999984 477667889999999


Q ss_pred             CCEEEccCCCCcccCCcCccCCCCCCeEeccCCeee
Q 036258          285 LIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQ  320 (331)
Q Consensus       285 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  320 (331)
                      |+.+.+..+ ++.....+|..+ +|+.+++.+|...
T Consensus       325 L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~  358 (401)
T 4fdw_A          325 VTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP  358 (401)
T ss_dssp             CCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred             ccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence            999999655 665667789999 9999999999876

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.64  E-value=5.9e-16  Score=123.32  Aligned_cols=130  Identities=23%  Similarity=0.308  Sum_probs=100.8

Q ss_pred             cccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcc--cccCCCCCceeeCcCccccccCchhccCCCCCCEE
Q 036258          131 RSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPN--SITNASELTLLELGKNSFSGLVPNTFGNLRFLSLL  208 (331)
Q Consensus       131 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L  208 (331)
                      +.++++++....    +|..++   .++++|++++|.+..++.  .+..+++|++|++++|.+.+..+..|..+++|++|
T Consensus        11 ~~l~~s~~~l~~----ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L   83 (192)
T 1w8a_A           11 TTVDCTGRGLKE----IPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQEL   83 (192)
T ss_dssp             TEEECTTSCCSS----CCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred             CEEEcCCCCcCc----CccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEE
Confidence            567776665543    344332   378889999888887664  37888899999999998888878888888899999


Q ss_pred             EccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccC
Q 036258          209 DLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSI  275 (331)
Q Consensus       209 ~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  275 (331)
                      ++++|.+..++       +..+..+++|++|++++|.+.+..|..+..++ +|++|++++|.+....
T Consensus        84 ~Ls~N~l~~~~-------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~c~c  142 (192)
T 1w8a_A           84 QLGENKIKEIS-------NKMFLGLHQLKTLNLYDNQISCVMPGSFEHLN-SLTSLNLASNPFNCNC  142 (192)
T ss_dssp             ECCSCCCCEEC-------SSSSTTCTTCCEEECCSSCCCEECTTSSTTCT-TCCEEECTTCCBCCSG
T ss_pred             ECCCCcCCccC-------HHHhcCCCCCCEEECCCCcCCeeCHHHhhcCC-CCCEEEeCCCCccCcC
Confidence            99999888643       33477888899999999998887788777776 8899999988887543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.63  E-value=2.4e-15  Score=117.08  Aligned_cols=133  Identities=26%  Similarity=0.285  Sum_probs=81.9

Q ss_pred             CCccEEEcCCCcCc-cCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCccccccc
Q 036258           55 SSLKMIRLSSNSLS-GSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSL  133 (331)
Q Consensus        55 ~~L~~L~l~~~~i~-~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  133 (331)
                      ++|++|++++|.+. +.+|.. +..+++|++|++++|.+.+.  ..+..+++|++|++++|.+++.+|..+.        
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--------   92 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAE--------   92 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHH--------
T ss_pred             ccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHh--------
Confidence            55666666666665 455544 25566666666666666543  4556666666666666665533333222        


Q ss_pred             ccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCc--ccccCCCCCceeeCcCccccccCc---hhccCCCCCCEE
Q 036258          134 VLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIP--NSITNASELTLLELGKNSFSGLVP---NTFGNLRFLSLL  208 (331)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~--~~~~~l~~L~~L~l~~n~~~~~~~---~~l~~~~~L~~L  208 (331)
                                          .+++|++|++++|.+..++  ..+..+++|+.|++++|.+.+..+   ..+..+++|++|
T Consensus        93 --------------------~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L  152 (168)
T 2ell_A           93 --------------------KLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYL  152 (168)
T ss_dssp             --------------------HCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEE
T ss_pred             --------------------hCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEe
Confidence                                3556666666666666554  566667777777777777765544   466677777777


Q ss_pred             EccCCcccCc
Q 036258          209 DLGNNYLTTR  218 (331)
Q Consensus       209 ~l~~~~l~~~  218 (331)
                      ++++|.+..+
T Consensus       153 ~l~~n~~~~~  162 (168)
T 2ell_A          153 DGYDREDQEA  162 (168)
T ss_dssp             TTEETTSCBC
T ss_pred             cCCCCChhhc
Confidence            7777766654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.62  E-value=8.1e-16  Score=117.33  Aligned_cols=128  Identities=23%  Similarity=0.197  Sum_probs=89.7

Q ss_pred             CCCceeeCcCcccc-ccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhc
Q 036258          179 SELTLLELGKNSFS-GLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNF  257 (331)
Q Consensus       179 ~~L~~L~l~~n~~~-~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~  257 (331)
                      +++++|++++|.+. +..|..+..+++|++|++++|.+...         ..+..+++|++|++++|.+.+.+|..+..+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---------~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l   87 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---------ANLPKLNKLKKLELSDNRVSGGLEVLAEKC   87 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---------TTCCCCTTCCEEECCSSCCCSCTHHHHHHC
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---------hhhhcCCCCCEEECCCCcccchHHHHhhhC
Confidence            55666666666665 44555566667777777777766642         336667777777777777775566655555


Q ss_pred             cccccEEEeccCccccc-CCccccCCCCCCEEEccCCCCcccCC---cCccCCCCCCeEeccC
Q 036258          258 SDSLQQFYAYDCELKGS-IPQEIGNLNGLIDLRLQDNDLNGTIP---TTVGRLQQLQGLFLFG  316 (331)
Q Consensus       258 ~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~l~~  316 (331)
                      + +|++|++++|.+++. .+..+..+++|+.|++++|.+++..+   ..+..+++|+.|++++
T Consensus        88 ~-~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           88 P-NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             T-TCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             C-CCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            5 788888888887742 33678888889999999998885443   3677888888888764

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.61  E-value=1.9e-15  Score=130.88  Aligned_cols=228  Identities=15%  Similarity=0.129  Sum_probs=158.4

Q ss_pred             CCCcchhcC--------CCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccc
Q 036258           45 VLTKNCFYN--------ISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKF  116 (331)
Q Consensus        45 ~~~~~~~~~--------~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~  116 (331)
                      .++..+|.+        +++|+.|++.+ .++ .|++..|.+|++|+.+++.+|.+..+.+.+|..+.++..+....+..
T Consensus        83 ~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~  160 (329)
T 3sb4_A           83 FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDA  160 (329)
T ss_dssp             EECTTTTEEEETTEEEECTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHH
T ss_pred             ccCHHHhcccccccccccCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhh
Confidence            456678999        99999999998 887 89999999999999999999998878888899888888877766321


Q ss_pred             ----cccCCccccCccccc-ccccCccccccccccCCcchhc---CCCCCcEEEcCCCCCCC-CcccccCCCCCceeeCc
Q 036258          117 ----TGRLPENIGNLSKLR-SLVLGHKAHNSLHGHLPSTLSV---SLPNLKWLALGMNKLRT-IPNSITNASELTLLELG  187 (331)
Q Consensus       117 ----~~~~~~~~~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~---~l~~L~~L~l~~~~l~~-~~~~~~~l~~L~~L~l~  187 (331)
                          ......+|.++..|+ .+.+..  ..    .++..++.   ...++..+.+.+.-... .......+++|+.+++.
T Consensus       161 ~~~~~~i~~~~f~~~~~L~~~i~~~~--~~----~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~  234 (329)
T 3sb4_A          161 YRFKNRWEHFAFIEGEPLETTIQVGA--MG----KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDIS  234 (329)
T ss_dssp             HHTSTTTTTSCEEESCCCEEEEEECT--TC----CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECT
T ss_pred             hhccccccccccccccccceeEEecC--CC----cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECC
Confidence                222334455555555 333321  11    11111111   23455666655432111 11111236788888888


Q ss_pred             CccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCc-EEEeecccccccCCchhhhccccccEEEe
Q 036258          188 KNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLK-VLGLHSNQLSGILPPLIGNFSDSLQQFYA  266 (331)
Q Consensus       188 ~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~-~L~l~~n~~~~~~~~~~~~~~~~L~~L~l  266 (331)
                      +|.+..+.+.+|.++.+|+.+++..+ ++.++.       .+|.++++|+ .+++.+ .+....+.+|.... +|+.+++
T Consensus       235 ~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~-------~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~-~L~~l~l  304 (329)
T 3sb4_A          235 KTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQ-------RVFSNCGRLAGTLELPA-SVTAIEFGAFMGCD-NLRYVLA  304 (329)
T ss_dssp             TBCCCEECTTTTTTCTTCCEEECCTT-CCEECT-------TTTTTCTTCCEEEEECT-TCCEECTTTTTTCT-TEEEEEE
T ss_pred             CCCcceecHhhhhCCCCCCEEECCcc-cceehH-------HHhhCChhccEEEEEcc-cceEEchhhhhCCc-cCCEEEe
Confidence            88888777788888888888888887 665543       3488888888 888887 66645556666555 8899998


Q ss_pred             ccCcccccCCccccCCCCCCEEEc
Q 036258          267 YDCELKGSIPQEIGNLNGLIDLRL  290 (331)
Q Consensus       267 ~~~~~~~~~~~~l~~l~~L~~L~l  290 (331)
                      .++.++...+.+|.++++|+.+..
T Consensus       305 ~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          305 TGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             CSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             CCCccCccchhhhcCCcchhhhcc
Confidence            888888777788999999988864

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.60  E-value=1.2e-14  Score=115.74  Aligned_cols=125  Identities=25%  Similarity=0.410  Sum_probs=78.3

Q ss_pred             ccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccccC
Q 036258           57 LKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLG  136 (331)
Q Consensus        57 L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  136 (331)
                      -++++++++.++ .+|..+   .++|++|++++|.+. .+|..|..+++|++|++++|.++...+..|.++++|++|+++
T Consensus        12 ~~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls   86 (193)
T 2wfh_A           12 DTVVRCSNKGLK-VLPKGI---PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS   86 (193)
T ss_dssp             TTEEECTTSCCS-SCCSCC---CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEcCCCCCC-cCCCCC---CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC
Confidence            367889999888 888765   468899999999887 667788888999999999998886655666666666666665


Q ss_pred             ccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcc-cccCCCCCceeeCcCcc
Q 036258          137 HKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPN-SITNASELTLLELGKNS  190 (331)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~l~~L~~L~l~~n~  190 (331)
                      +|.+..+    +...+..+++|++|++++|.++.++. .+..+++|+.|++++|.
T Consensus        87 ~N~l~~i----~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A           87 YNRLRCI----PPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             SSCCCBC----CTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCccCEe----CHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence            4444322    22222344444444444444443332 23334444444444443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.59  E-value=1.7e-14  Score=114.91  Aligned_cols=127  Identities=28%  Similarity=0.374  Sum_probs=90.9

Q ss_pred             cEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcE
Q 036258          159 KWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKV  238 (331)
Q Consensus       159 ~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~  238 (331)
                      ++++++++.++.+|..+.  ++|++|++++|.+. ..|..+..+++|++|++++|.++.++       +..+..+++|++
T Consensus        13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~-------~~~f~~l~~L~~   82 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLS-------NQSFSNMTQLLT   82 (193)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCC-------TTTTTTCTTCCE
T ss_pred             CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeC-------HhHccCCCCCCE
Confidence            567888888888776553  57888888888887 44567777888888888888877643       234777778888


Q ss_pred             EEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCc
Q 036258          239 LGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLN  296 (331)
Q Consensus       239 L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~  296 (331)
                      |++++|.+.+..+..+..++ +|+.|++++|.++...+..+..+++|+.|++++|++.
T Consensus        83 L~Ls~N~l~~i~~~~f~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           83 LILSYNRLRCIPPRTFDGLK-SLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             EECCSSCCCBCCTTTTTTCT-TCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             EECCCCccCEeCHHHhCCCC-CCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            88888877766665666655 7777777777777544445667777777777777765

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.59  E-value=1.5e-14  Score=113.59  Aligned_cols=130  Identities=22%  Similarity=0.285  Sum_probs=89.3

Q ss_pred             CcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCc
Q 036258          158 LKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLK  237 (331)
Q Consensus       158 L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~  237 (331)
                      .+.+++.++++..+|..+  .++|++|++++|.+.+..+..+..+++|++|++++|.+..++.       ..+..+++|+
T Consensus         9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------~~~~~l~~L~   79 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPD-------GVFDKLTKLT   79 (177)
T ss_dssp             TTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT-------TTTTTCTTCC
T ss_pred             CCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeCh-------hHccCCCccC
Confidence            567888888888777544  3688888888888876666677778888888888887775432       2356777777


Q ss_pred             EEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCcc
Q 036258          238 VLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNG  297 (331)
Q Consensus       238 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~  297 (331)
                      +|++++|.+.+..+..+..++ +|+.|++++|.+++..+..+..+++|+.|++++|++.+
T Consensus        80 ~L~l~~N~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           80 ILYLHENKLQSLPNGVFDKLT-QLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             EEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             EEECCCCCccccCHHHhhCCc-ccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            777777777755444455544 67777777776664444445666667777777776664

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.58  E-value=4.2e-14  Score=111.04  Aligned_cols=132  Identities=21%  Similarity=0.288  Sum_probs=71.1

Q ss_pred             ceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccc
Q 036258          182 TLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSL  261 (331)
Q Consensus       182 ~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L  261 (331)
                      +.++++++.+... |..+  .++|++|++++|.+..++       +..+..+++|++|++++|.+.+..+..+..+. +|
T Consensus        10 ~~l~~~~~~l~~~-p~~~--~~~l~~L~l~~n~l~~~~-------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L   78 (177)
T 2o6r_A           10 TEIRCNSKGLTSV-PTGI--PSSATRLELESNKLQSLP-------HGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLT-KL   78 (177)
T ss_dssp             TEEECCSSCCSSC-CTTC--CTTCSEEECCSSCCCCCC-------TTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT-TC
T ss_pred             CEEEecCCCCccC-CCCC--CCCCcEEEeCCCcccEeC-------HHHhcCcccccEEECCCCcceEeChhHccCCC-cc
Confidence            4555555555432 2211  245666666666655432       12245556666666666666544444444444 66


Q ss_pred             cEEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEeccCCeeeecCC
Q 036258          262 QQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIP  324 (331)
Q Consensus       262 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p  324 (331)
                      +.|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++++.+|
T Consensus        79 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           79 TILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            666666666664444445566666666666666663333344556666666666666654443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.57  E-value=7.9e-15  Score=111.80  Aligned_cols=126  Identities=27%  Similarity=0.317  Sum_probs=71.3

Q ss_pred             CCccEEEcCCCcCc-cCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCccccccc
Q 036258           55 SSLKMIRLSSNSLS-GSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSL  133 (331)
Q Consensus        55 ~~L~~L~l~~~~i~-~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  133 (331)
                      +++++|++++|.+. +.+|..+ ..+++|++|++++|.+.+.  ..+..+++|++|++++|.+++.+|..+.        
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~-~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~--------   85 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLT-DEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAE--------   85 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCC-TTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHH--------
T ss_pred             ccCeEEEccCCcCChhHHHHHH-hhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhh--------
Confidence            55667777777665 4555433 5666677777766666543  4566666666666666666533333332        


Q ss_pred             ccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCc--ccccCCCCCceeeCcCccccccCc---hhccCCCCCCEE
Q 036258          134 VLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIP--NSITNASELTLLELGKNSFSGLVP---NTFGNLRFLSLL  208 (331)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~--~~~~~l~~L~~L~l~~n~~~~~~~---~~l~~~~~L~~L  208 (331)
                                          .+++|++|++++|.+..++  ..+..+++|++|++++|.+.+..+   ..+..+++|++|
T Consensus        86 --------------------~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L  145 (149)
T 2je0_A           86 --------------------KCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYL  145 (149)
T ss_dssp             --------------------HCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEE
T ss_pred             --------------------hCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccc
Confidence                                3444555555555555432  455556666666666666554433   345555566665


Q ss_pred             Ecc
Q 036258          209 DLG  211 (331)
Q Consensus       209 ~l~  211 (331)
                      +++
T Consensus       146 ~l~  148 (149)
T 2je0_A          146 DGY  148 (149)
T ss_dssp             TTB
T ss_pred             cCC
Confidence            553

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.56  E-value=8.1e-15  Score=115.04  Aligned_cols=130  Identities=19%  Similarity=0.187  Sum_probs=63.6

Q ss_pred             CCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccC
Q 036258          154 SLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNC  233 (331)
Q Consensus       154 ~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~  233 (331)
                      .+++|++|++++|.+..++......++|+.|++++|.+.+.  ..+..+++|++|++++|                    
T Consensus        17 ~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N--------------------   74 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNN--------------------   74 (176)
T ss_dssp             CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSS--------------------
T ss_pred             CcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCC--------------------
Confidence            44555666666655554433222222555555555555433  33444444555555554                    


Q ss_pred             CCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCc--cccCCCCCCEEEccCCCCcccCCcC----ccCCC
Q 036258          234 IYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQ--EIGNLNGLIDLRLQDNDLNGTIPTT----VGRLQ  307 (331)
Q Consensus       234 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~----l~~l~  307 (331)
                                 .+.+..+..+..++ +|++|++++|.+. .+|.  .+..+++|+.|++++|++. .+|..    +..++
T Consensus        75 -----------~l~~~~~~~~~~l~-~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~  140 (176)
T 1a9n_A           75 -----------RICRIGEGLDQALP-DLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVP  140 (176)
T ss_dssp             -----------CCCEECSCHHHHCT-TCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCT
T ss_pred             -----------cccccCcchhhcCC-CCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCC
Confidence                       44432222223333 5555555555553 2333  4555556666666666655 34432    55556


Q ss_pred             CCCeEeccCCee
Q 036258          308 QLQGLFLFGNNL  319 (331)
Q Consensus       308 ~L~~L~l~~n~~  319 (331)
                      +|+.|++++|..
T Consensus       141 ~L~~Ld~~~n~~  152 (176)
T 1a9n_A          141 QVRVLDFQKVKL  152 (176)
T ss_dssp             TCSEETTEECCH
T ss_pred             ccceeCCCcCCH
Confidence            666666665554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.56  E-value=1.8e-14  Score=113.06  Aligned_cols=82  Identities=16%  Similarity=0.176  Sum_probs=52.8

Q ss_pred             hcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccc
Q 036258           51 FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKL  130 (331)
Q Consensus        51 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L  130 (331)
                      |.++.+|++|++++|.++ .++. +....++|++|++++|.+.+.  ..+..+++|++|++++|.++...+..+..+++|
T Consensus        15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   90 (176)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence            566678888888888887 5653 334344888888888877754  467777788888888877763322223444444


Q ss_pred             cccccC
Q 036258          131 RSLVLG  136 (331)
Q Consensus       131 ~~L~l~  136 (331)
                      ++|+++
T Consensus        91 ~~L~L~   96 (176)
T 1a9n_A           91 TELILT   96 (176)
T ss_dssp             CEEECC
T ss_pred             CEEECC
Confidence            444443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.45  E-value=3.1e-15  Score=119.77  Aligned_cols=139  Identities=21%  Similarity=0.288  Sum_probs=105.7

Q ss_pred             CCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccc
Q 036258          167 KLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQL  246 (331)
Q Consensus       167 ~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~  246 (331)
                      .+..+|..+..+++|++|++++|.+.+ .| .+..+++|++|++++|.+..        ++..+..+++|++|++++|.+
T Consensus        36 ~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~--------l~~~~~~~~~L~~L~L~~N~l  105 (198)
T 1ds9_A           36 PIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK--------IENLDAVADTLEELWISYNQI  105 (198)
T ss_dssp             TCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS--------CSSHHHHHHHCSEEEEEEEEC
T ss_pred             cHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc--------ccchhhcCCcCCEEECcCCcC
Confidence            344566678888889999998888876 44 67788889999999988875        344466678899999999988


Q ss_pred             cccCCchhhhccccccEEEeccCcccccCC-ccccCCCCCCEEEccCCCCcccCCcC----------ccCCCCCCeEecc
Q 036258          247 SGILPPLIGNFSDSLQQFYAYDCELKGSIP-QEIGNLNGLIDLRLQDNDLNGTIPTT----------VGRLQQLQGLFLF  315 (331)
Q Consensus       247 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~----------l~~l~~L~~L~l~  315 (331)
                      .+ +| .+..++ +|++|++++|.+.+..+ ..+..+++|+.|++++|++.+..|..          +..+++|+.|+  
T Consensus       106 ~~-l~-~~~~l~-~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--  180 (198)
T 1ds9_A          106 AS-LS-GIEKLV-NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--  180 (198)
T ss_dssp             CC-HH-HHHHHH-HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--
T ss_pred             Cc-CC-ccccCC-CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--
Confidence            75 44 566665 89999999998874222 46888999999999999987654442          67788999886  


Q ss_pred             CCeee
Q 036258          316 GNNLQ  320 (331)
Q Consensus       316 ~n~~~  320 (331)
                      +|.++
T Consensus       181 ~~~i~  185 (198)
T 1ds9_A          181 GMPVD  185 (198)
T ss_dssp             CGGGT
T ss_pred             CcccC
Confidence            66665

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.44  E-value=8.9e-16  Score=122.95  Aligned_cols=114  Identities=24%  Similarity=0.236  Sum_probs=72.9

Q ss_pred             CCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccccCccccccccccCCc
Q 036258           70 SLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPS  149 (331)
Q Consensus        70 ~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~  149 (331)
                      .+|..+ ..+++|++|++++|.+.+ +| .+..+++|++|++++|.++ .+|..+..+++|++|++++|....+.     
T Consensus        39 ~l~~~~-~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l~-----  109 (198)
T 1ds9_A           39 KMDATL-STLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLS-----  109 (198)
T ss_dssp             CCHHHH-HHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCHH-----
T ss_pred             hhhHHH-hcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcCC-----
Confidence            333344 778999999999988875 55 7788889999999998887 56666666677777777655544321     


Q ss_pred             chhcCCCCCcEEEcCCCCCCCCcc--cccCCCCCceeeCcCccccc
Q 036258          150 TLSVSLPNLKWLALGMNKLRTIPN--SITNASELTLLELGKNSFSG  193 (331)
Q Consensus       150 ~~~~~l~~L~~L~l~~~~l~~~~~--~~~~l~~L~~L~l~~n~~~~  193 (331)
                      . +..+++|++|++++|.+..++.  .+..+++|++|++++|.+.+
T Consensus       110 ~-~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~  154 (198)
T 1ds9_A          110 G-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             H-HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred             c-cccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence            1 2245556666666665554332  44555555555555555543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.43  E-value=9.6e-13  Score=102.46  Aligned_cols=86  Identities=22%  Similarity=0.293  Sum_probs=40.2

Q ss_pred             CCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEe
Q 036258          234 IYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLF  313 (331)
Q Consensus       234 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  313 (331)
                      ++|++|++++|.+.+..|..+..+. +|++|++++|++.+..+..+.++++|+.|++++|.+++..+..|..+++|++|+
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  108 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLT-QLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIW  108 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcc-cCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEE
Confidence            3344444444444433344444433 444555555544433333444555555555555555533333344555555555


Q ss_pred             ccCCeee
Q 036258          314 LFGNNLQ  320 (331)
Q Consensus       314 l~~n~~~  320 (331)
                      +++|+++
T Consensus       109 L~~N~~~  115 (170)
T 3g39_A          109 LLNNPWD  115 (170)
T ss_dssp             CCSSCBC
T ss_pred             eCCCCCC
Confidence            5555544

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.40  E-value=1.8e-12  Score=100.90  Aligned_cols=106  Identities=25%  Similarity=0.247  Sum_probs=75.7

Q ss_pred             CccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCccccccccc
Q 036258           56 SLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVL  135 (331)
Q Consensus        56 ~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  135 (331)
                      ..++++++++.++ .+|..+   .++|++|++++|.+.+..|..|..+++|++|++++|+++...+..|..+++|++|++
T Consensus        10 ~~~~l~~s~n~l~-~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L   85 (170)
T 3g39_A           10 SGTTVDCSGKSLA-SVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL   85 (170)
T ss_dssp             ETTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEEeCCCCcC-ccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence            4678999999998 788766   488999999999998877888899999999999999988555555666666666666


Q ss_pred             CccccccccccCCcchhcCCCCCcEEEcCCCCCC
Q 036258          136 GHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLR  169 (331)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~  169 (331)
                      ++|.+..    ++...+..+++|++|++++|.+.
T Consensus        86 ~~N~l~~----~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           86 NDNQLKS----IPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             CSSCCCC----CCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCCccCE----eCHHHhcCCCCCCEEEeCCCCCC
Confidence            5544432    22333334555555555555443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.39  E-value=2.9e-12  Score=100.06  Aligned_cols=104  Identities=24%  Similarity=0.263  Sum_probs=56.5

Q ss_pred             ceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccc
Q 036258          182 TLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSL  261 (331)
Q Consensus       182 ~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L  261 (331)
                      +.++++++.+.. +|..+.  ++|++|++++|.+..+.       +..+..+++|++|+|++|.+.+..+..+..+. +|
T Consensus        15 ~~l~~~~n~l~~-iP~~~~--~~L~~L~Ls~N~l~~~~-------~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~-~L   83 (174)
T 2r9u_A           15 TLVNCQNIRLAS-VPAGIP--TDKQRLWLNNNQITKLE-------PGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLT-QL   83 (174)
T ss_dssp             SEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCCCC-------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TC
T ss_pred             cEEEeCCCCCCc-cCCCcC--CCCcEEEeCCCCccccC-------HHHhcCCcCCCEEECCCCCCCccChhHhCCcc-hh
Confidence            456666666543 233232  55666666666665532       23355666666666666666543333334443 66


Q ss_pred             cEEEeccCcccccCCccccCCCCCCEEEccCCCCc
Q 036258          262 QQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLN  296 (331)
Q Consensus       262 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~  296 (331)
                      +.|+|++|.+.+..+..+..+++|+.|++++|++.
T Consensus        84 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           84 TQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             hEEECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence            66666666665333334555666666666666655

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.39  E-value=3e-12  Score=100.01  Aligned_cols=105  Identities=21%  Similarity=0.253  Sum_probs=75.1

Q ss_pred             ccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccccC
Q 036258           57 LKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLG  136 (331)
Q Consensus        57 L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  136 (331)
                      -+.++++++.+. .+|..+   .++|++|++++|.+.+..|..|..+++|++|++++|++++..+..|..+++|++|+++
T Consensus        14 ~~~l~~~~n~l~-~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~   89 (174)
T 2r9u_A           14 QTLVNCQNIRLA-SVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN   89 (174)
T ss_dssp             SSEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CcEEEeCCCCCC-ccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence            478999999987 888766   4889999999999988778888999999999999998885444455666666666665


Q ss_pred             ccccccccccCCcchhcCCCCCcEEEcCCCCCC
Q 036258          137 HKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLR  169 (331)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~  169 (331)
                      +|.+.    .++...+..+++|++|++.+|.+.
T Consensus        90 ~N~l~----~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           90 DNHLK----SIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             SSCCC----CCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             CCccc----eeCHHHhccccCCCEEEeCCCCcc
Confidence            55443    223333335555666666555554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.39  E-value=3.2e-11  Score=106.83  Aligned_cols=257  Identities=14%  Similarity=0.072  Sum_probs=142.9

Q ss_pred             CCcchhcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCcc----------
Q 036258           46 LTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNK----------  115 (331)
Q Consensus        46 ~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~----------  115 (331)
                      ++..+|.++.+|+.+.+.. .++ .|+...|.++.+|+.+++..+ ++.+...+|.++..|+.+.+..+-          
T Consensus        62 Ig~~AF~~c~~L~~i~lp~-~i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~  138 (394)
T 4fs7_A           62 IGYAAFQGCRKVTEIKIPS-TVR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKG  138 (394)
T ss_dssp             ECTTTTTTCTTEEEEECCT-TCC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTT
T ss_pred             hHHHHhhCCCCceEEEeCC-Ccc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeec
Confidence            5666888888888888854 365 777777888888888888654 433444556666655555443220          


Q ss_pred             -----------ccccCCccccCcccccccccCccccccccccCCcchhcCCCCCcEEEcCCC------------------
Q 036258          116 -----------FTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMN------------------  166 (331)
Q Consensus       116 -----------~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~------------------  166 (331)
                                 .......+|.++.+|+.+.+..+.     ..+...+|..+.+|+.+.+..+                  
T Consensus       139 ~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~-----~~I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~~~L~~i  213 (394)
T 4fs7_A          139 CDFKEITIPEGVTVIGDEAFATCESLEYVSLPDSM-----ETLHNGLFSGCGKLKSIKLPRNLKIIRDYCFAECILLENM  213 (394)
T ss_dssp             CCCSEEECCTTCCEECTTTTTTCTTCCEEECCTTC-----CEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCTTCCBC
T ss_pred             ccccccccCccccccchhhhcccCCCcEEecCCcc-----ceeccccccCCCCceEEEcCCCceEeCchhhcccccccee
Confidence                       001112345555666666553211     1233333434444444444322                  


Q ss_pred             -----CCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCC--------------ccccc
Q 036258          167 -----KLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTT--------------EWSFL  227 (331)
Q Consensus       167 -----~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~--------------~~~~~  227 (331)
                           .. .+.........|+.+.+... +.......+..+..++.+.+..+... +....              ..-..
T Consensus       214 ~~~~~~~-~i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~~  290 (394)
T 4fs7_A          214 EFPNSLY-YLGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVPE  290 (394)
T ss_dssp             CCCTTCC-EECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEECT
T ss_pred             ecCCCce-EeehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeecc
Confidence                 11 11112223345565555432 12233345555666666665443211 10000              00011


Q ss_pred             cccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCC
Q 036258          228 SSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQ  307 (331)
Q Consensus       228 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~  307 (331)
                      ..+..+.+|+.+.+.++ +......++.... +|+.+++..+ ++.....+|.+|.+|+.+.+..+ ++.....+|.+++
T Consensus       291 ~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~-~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~  366 (394)
T 4fs7_A          291 KTFYGCSSLTEVKLLDS-VKFIGEEAFESCT-SLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCI  366 (394)
T ss_dssp             TTTTTCTTCCEEEECTT-CCEECTTTTTTCT-TCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCT
T ss_pred             ccccccccccccccccc-cceechhhhcCCC-CCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCC
Confidence            24667788888888654 4433344444444 8888888644 55556778889999999998766 6645567888899


Q ss_pred             CCCeEeccCC
Q 036258          308 QLQGLFLFGN  317 (331)
Q Consensus       308 ~L~~L~l~~n  317 (331)
                      +|+.+++..+
T Consensus       367 ~L~~i~lp~~  376 (394)
T 4fs7_A          367 NLKKVELPKR  376 (394)
T ss_dssp             TCCEEEEEGG
T ss_pred             CCCEEEECCC
Confidence            9999988654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.37  E-value=4.2e-11  Score=106.14  Aligned_cols=111  Identities=10%  Similarity=0.204  Sum_probs=69.3

Q ss_pred             chhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccC
Q 036258          196 PNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSI  275 (331)
Q Consensus       196 ~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  275 (331)
                      ..+|..+..|+.+.+.... ..++       ...+.+++.|+.+.+.. .+......+|... .+|+.+.+..+ ++...
T Consensus       258 ~~aF~~c~~L~~i~lp~~~-~~I~-------~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c-~~L~~i~lp~~-v~~I~  326 (394)
T 4gt6_A          258 THAFDSCAYLASVKMPDSV-VSIG-------TGAFMNCPALQDIEFSS-RITELPESVFAGC-ISLKSIDIPEG-ITQIL  326 (394)
T ss_dssp             TTTTTTCSSCCEEECCTTC-CEEC-------TTTTTTCTTCCEEECCT-TCCEECTTTTTTC-TTCCEEECCTT-CCEEC
T ss_pred             cceeeecccccEEeccccc-ceec-------CcccccccccccccCCC-cccccCceeecCC-CCcCEEEeCCc-ccEeh
Confidence            3456667777777775432 2221       23467777777777753 3432333344333 37888888653 44455


Q ss_pred             CccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEeccCCe
Q 036258          276 PQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNN  318 (331)
Q Consensus       276 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  318 (331)
                      ..+|.+|.+|+++.+..+ ++.....+|.+|.+|+.+++.++.
T Consensus       327 ~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          327 DDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             TTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred             HhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence            667888888888888543 553445678888888888887764

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.37  E-value=4.7e-11  Score=105.80  Aligned_cols=250  Identities=12%  Similarity=0.094  Sum_probs=161.4

Q ss_pred             CccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccccCcccc------
Q 036258           67 LSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAH------  140 (331)
Q Consensus        67 i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~------  140 (331)
                      ++ .|....|.++.+|+.+.+..+ ++.+...+|.++.+|+.+++..+ ++.....+|.++.+|+.+.+..+-.      
T Consensus        59 Vt-sIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~a  135 (394)
T 4fs7_A           59 VV-SIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEA  135 (394)
T ss_dssp             EE-EECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTT
T ss_pred             Ee-EhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeeccee
Confidence            55 788888999999999999854 66677788999999999999765 4445556788888888776643110      


Q ss_pred             -----------ccccccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEE
Q 036258          141 -----------NSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLD  209 (331)
Q Consensus       141 -----------~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~  209 (331)
                                 ......+...+|..+.+|+.+.+..+....-...|..+.+|+.+.+..+ +......+|..+..|+.+.
T Consensus       136 F~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~  214 (394)
T 4fs7_A          136 FKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDSMETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENME  214 (394)
T ss_dssp             TTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCC
T ss_pred             eecccccccccCccccccchhhhcccCCCcEEecCCccceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceee
Confidence                       0001123456677899999999976543322367888899999988765 3334455666666666665


Q ss_pred             ccCCcc------------cCc--cCCCccccccccccCCCCcEEEeeccccc-------------------ccCCchhhh
Q 036258          210 LGNNYL------------TTR--SSTTEWSFLSSLTNCIYLKVLGLHSNQLS-------------------GILPPLIGN  256 (331)
Q Consensus       210 l~~~~l------------~~~--~~~~~~~~~~~~~~~~~L~~L~l~~n~~~-------------------~~~~~~~~~  256 (331)
                      +..+..            +.+  +.....-....+..+..++.+.+..+...                   ..++...+.
T Consensus       215 ~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~  294 (394)
T 4fs7_A          215 FPNSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFY  294 (394)
T ss_dssp             CCTTCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTT
T ss_pred             cCCCceEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeecccccc
Confidence            543211            110  00000011234566777777777654321                   011222222


Q ss_pred             ccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEeccCCeeeecCC
Q 036258          257 FSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIP  324 (331)
Q Consensus       257 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p  324 (331)
                      ...+|+.+.+..+ +......+|.++.+|+.+++..+ ++.....+|.++.+|+.+++..+ ++ .|+
T Consensus       295 ~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~  358 (394)
T 4fs7_A          295 GCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIG  358 (394)
T ss_dssp             TCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EEC
T ss_pred             ccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-Eeh
Confidence            2347888887654 44455678899999999999654 66455678999999999999776 55 444

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.28  E-value=4.3e-14  Score=124.01  Aligned_cols=89  Identities=19%  Similarity=0.194  Sum_probs=38.4

Q ss_pred             CCCcEEEcCCCCCCC-----CcccccCCCCCceeeCcCcccccc----CchhccCCCCCCEEEccCCcccCccCCCcccc
Q 036258          156 PNLKWLALGMNKLRT-----IPNSITNASELTLLELGKNSFSGL----VPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSF  226 (331)
Q Consensus       156 ~~L~~L~l~~~~l~~-----~~~~~~~l~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~  226 (331)
                      ++|++|++++|.++.     ++..+...++|++|++++|.+.+.    +...+...++|++|++++|.++..+..   .+
T Consensus       155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~---~l  231 (372)
T 3un9_A          155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL---AL  231 (372)
T ss_dssp             CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH---HH
T ss_pred             CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH---HH
Confidence            445555555554431     223334445555555555554421    123333444455555555544432111   12


Q ss_pred             ccccccCCCCcEEEeeccccc
Q 036258          227 LSSLTNCIYLKVLGLHSNQLS  247 (331)
Q Consensus       227 ~~~~~~~~~L~~L~l~~n~~~  247 (331)
                      ...+...+.|++|+|++|.+.
T Consensus       232 ~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          232 ARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHHHHCSSCCEEECTTSSCC
T ss_pred             HHHHHhCCCCCEEeccCCCCC
Confidence            222333444555555555544

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.24  E-value=1.7e-09  Score=95.73  Aligned_cols=265  Identities=13%  Similarity=0.168  Sum_probs=165.1

Q ss_pred             CCCCcchhcCCC-CccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCc---ccccCCccCcCCCCCCEEEccCcccccc
Q 036258           44 SVLTKNCFYNIS-SLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNG---FFGQIPLSLSKCTQLQHLWLEHNKFTGR  119 (331)
Q Consensus        44 ~~~~~~~~~~~~-~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~l~~n~~~~~  119 (331)
                      ..++.++|.+++ .|+.+.+-.+ ++ .|....|.++.+|+.+.+..+.   ++.+...+|..+.+|+.+.+..+ ++..
T Consensus        52 t~Ig~~aF~~~~~~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I  128 (394)
T 4gt6_A           52 SKIGDRVFCNYKYVLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEI  128 (394)
T ss_dssp             EEECTTTTTTCCSCCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEE
T ss_pred             eEcCHhhccCCCCcCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-ccee
Confidence            345666788875 4888888543 65 7777788888888888887652   44455567778888887777554 3334


Q ss_pred             CCccccCcccccccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCc-ccccCCCCCceeeCcCccccccCchh
Q 036258          120 LPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIP-NSITNASELTLLELGKNSFSGLVPNT  198 (331)
Q Consensus       120 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~  198 (331)
                      ...+|..+.+|+.+.+..+ .    ..+...+|..+.+|+.+.+..+ +..+. .+|. ...|+.+.+..+-. .....+
T Consensus       129 ~~~aF~~c~~L~~i~lp~~-~----~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~-~i~~~a  200 (394)
T 4gt6_A          129 DSEAFHHCEELDTVTIPEG-V----TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVT-RIGTNA  200 (394)
T ss_dssp             CTTTTTTCTTCCEEECCTT-C----CEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCC-EECTTT
T ss_pred             hhhhhhhhcccccccccce-e----eeecccceecccccccccccce-eeEecccccc-ccceeEEEECCccc-ccccch
Confidence            4566777788888777421 1    1344555667777777777654 33333 2333 35666666654322 233344


Q ss_pred             ccCCCCCCEEEccCCcccCc-----------------------------cCCCccccccccccCCCCcEEEeeccccccc
Q 036258          199 FGNLRFLSLLDLGNNYLTTR-----------------------------SSTTEWSFLSSLTNCIYLKVLGLHSNQLSGI  249 (331)
Q Consensus       199 l~~~~~L~~L~l~~~~l~~~-----------------------------~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~  249 (331)
                      |..+..++............                             +.....-...+|..+..|+.+.+.++... .
T Consensus       201 f~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~~-I  279 (394)
T 4gt6_A          201 FSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVVS-I  279 (394)
T ss_dssp             TTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCCE-E
T ss_pred             hhhccccceecccccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccce-e
Confidence            55555555544332211110                             00000012245788899999998765432 3


Q ss_pred             CCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEeccCCeeeecCCc
Q 036258          250 LPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPS  325 (331)
Q Consensus       250 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~  325 (331)
                      ...++.... .|+.+.+. +.++.....+|.+|.+|+.+.+..+ ++.....+|.+|.+|+.+.+-.+ ++ .|++
T Consensus       280 ~~~aF~~c~-~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~  350 (394)
T 4gt6_A          280 GTGAFMNCP-ALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIPE  350 (394)
T ss_dssp             CTTTTTTCT-TCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCCG
T ss_pred             cCccccccc-ccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEhH
Confidence            334444444 89999986 4455566778999999999999764 66455678999999999999654 55 5553

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.23  E-value=3.2e-13  Score=118.45  Aligned_cols=165  Identities=16%  Similarity=0.127  Sum_probs=118.5

Q ss_pred             CCCccEEEcCCCcCccC----CChhhhcCCCCCcEEEccCCcccccCCccC-cCCCCCCEEEccCccccccCCccc----
Q 036258           54 ISSLKMIRLSSNSLSGS----LPNDLCNRLPSLEQLVLRSNGFFGQIPLSL-SKCTQLQHLWLEHNKFTGRLPENI----  124 (331)
Q Consensus        54 ~~~L~~L~l~~~~i~~~----~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~----  124 (331)
                      +++|++|++++|.++..    +...+....++|+.|+|++|.+.......+ ..+++|++|++++|.++......+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            46799999999998732    222221234799999999998864333333 345789999999999874433333    


Q ss_pred             -cCcccccccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCC-----CcccccCCCCCceeeCcCcccccc----
Q 036258          125 -GNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRT-----IPNSITNASELTLLELGKNSFSGL----  194 (331)
Q Consensus       125 -~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-----~~~~~~~l~~L~~L~l~~n~~~~~----  194 (331)
                       ...++|++|++++|.+...............++|++|++++|.+..     ++..+...+.|++|++++|.+.+.    
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence             2467899999988776543322222223478899999999999872     356677788999999999999753    


Q ss_pred             CchhccCCCCCCEEEccCCcccCc
Q 036258          195 VPNTFGNLRFLSLLDLGNNYLTTR  218 (331)
Q Consensus       195 ~~~~l~~~~~L~~L~l~~~~l~~~  218 (331)
                      +...+...++|++|++++|.+...
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCCHH
T ss_pred             HHHHHHhCCCCCEEeccCCCCCHH
Confidence            334455678999999999998763

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.16  E-value=8.2e-09  Score=90.82  Aligned_cols=253  Identities=12%  Similarity=0.107  Sum_probs=139.8

Q ss_pred             cCCCCCCCcchhcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCcccccc
Q 036258           40 ADPYSVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGR  119 (331)
Q Consensus        40 ~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~  119 (331)
                      ++....++..+|.++.+|+.+.+..+ ++ .|+...|..+ +|+.+.+..+ +..+...+|... +|+.+.+..+-.. .
T Consensus        54 p~~vt~Ig~~aF~~C~~L~~I~lp~~-v~-~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~i~lp~~~~~-i  127 (379)
T 4h09_A           54 NSGITSIGEANFNSCYNMTKVTVAST-VT-SIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDDFEFPGATTE-I  127 (379)
T ss_dssp             CTTEEEECTTTTTTCTTCCEEEECTT-CC-EECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSEEECCTTCCE-E
T ss_pred             CCCccChHHHHhhCCCCCCEEEeCCc-ce-EechhhhcCC-CCceEECCce-eeEeccceeccC-CcccccCCCcccc-c
Confidence            35556677788999999999999644 65 7777888776 6777776644 443444455543 6888877654221 2


Q ss_pred             CCccccCcccccccccCccccccccccCCcchhcCCCCCcEEEcCCC---------------------------------
Q 036258          120 LPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMN---------------------------------  166 (331)
Q Consensus       120 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~---------------------------------  166 (331)
                      ...+|.+. +++.+.+..+ ..    .+...+|..+.+++.+.+...                                 
T Consensus       128 ~~~~F~~~-~l~~~~~~~~-v~----~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (379)
T 4h09_A          128 GNYIFYNS-SVKRIVIPKS-VT----TIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTI  201 (379)
T ss_dssp             CTTTTTTC-CCCEEEECTT-CC----EECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEEC
T ss_pred             cccccccc-eeeeeeccce-ee----ccccchhcccccccccccccccceeecccceecccccceecccccccccccccc
Confidence            22222222 2333322110 00    111222223333333333221                                 


Q ss_pred             ---CCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeec
Q 036258          167 ---KLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHS  243 (331)
Q Consensus       167 ---~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  243 (331)
                         ........+.....++.+.+..+ +......++..+..|+.+.+..+ ++.++.       ..+..+.+|+.+.+..
T Consensus       202 ~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~-------~aF~~~~~l~~i~l~~  272 (379)
T 4h09_A          202 PSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGS-------FLLQNCTALKTLNFYA  272 (379)
T ss_dssp             CTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECT-------TTTTTCTTCCEEEECC
T ss_pred             ccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCc-------cccceeehhccccccc
Confidence               11111223344455555555433 22344456666777777777654 443322       2366777777777754


Q ss_pred             ccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEeccC
Q 036258          244 NQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFG  316 (331)
Q Consensus       244 n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~  316 (331)
                      + +.......+... .+|+.+.+.++.+......+|.+|.+|+.+.+..+ ++.....+|.++.+|+.+.+..
T Consensus       273 ~-i~~i~~~aF~~c-~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          273 K-VKTVPYLLCSGC-SNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK  342 (379)
T ss_dssp             C-CSEECTTTTTTC-TTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred             c-ceeccccccccc-cccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence            3 332223333333 37888888777776566677888888888888543 5534456777777888777754

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.14  E-value=1.6e-10  Score=100.46  Aligned_cols=103  Identities=18%  Similarity=0.136  Sum_probs=69.3

Q ss_pred             eeeCcCc-cccccCchhccCCCCCCEEEccC-CcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhcccc
Q 036258          183 LLELGKN-SFSGLVPNTFGNLRFLSLLDLGN-NYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDS  260 (331)
Q Consensus       183 ~L~l~~n-~~~~~~~~~l~~~~~L~~L~l~~-~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~  260 (331)
                      .++++++ .+.. +|. +..+.+|++|+|++ |.+..+       .+..+..+++|++|+|++|.+.+..|..|..+. +
T Consensus        12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~-------~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~-~   81 (347)
T 2ifg_A           12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHL-------ELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP-R   81 (347)
T ss_dssp             CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEE-------CGGGSCSCCCCSEEECCSSCCCEECTTGGGSCS-C
T ss_pred             EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCc-------ChhHhccccCCCEEECCCCccceeCHHHhcCCc-C
Confidence            4566666 6654 455 77777788888875 777653       224477777777777777777766666666665 7


Q ss_pred             ccEEEeccCcccccCCccccCCCCCCEEEccCCCCc
Q 036258          261 LQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLN  296 (331)
Q Consensus       261 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~  296 (331)
                      |+.|+|++|++.+..+..+..++ |+.|++.+|++.
T Consensus        82 L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           82 LSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             CCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            77777777777744444454444 777777777776

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.13  E-value=2e-10  Score=99.88  Aligned_cols=103  Identities=21%  Similarity=0.188  Sum_probs=65.3

Q ss_pred             EEEcCCC-cCccCCChhhhcCCCCCcEEEccC-CcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccccC
Q 036258           59 MIRLSSN-SLSGSLPNDLCNRLPSLEQLVLRS-NGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLG  136 (331)
Q Consensus        59 ~L~l~~~-~i~~~~~~~~~~~~~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  136 (331)
                      .++++++ .++ .+|.  +..+++|+.|+|++ |.+.+..+..|..+++|++|+|++|.+++..|..|.++++|++|+|+
T Consensus        12 ~v~~~~~n~l~-~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             CEECCSSCCCT-TTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             EEEcCCCCCCC-ccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            4566666 666 5666  36666777777774 66665555667777777777777777776666666777777777776


Q ss_pred             ccccccccccCCcchhcCCCCCcEEEcCCCCCC
Q 036258          137 HKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLR  169 (331)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~  169 (331)
                      +|.+..    ++...+..++ |++|++.+|.+.
T Consensus        89 ~N~l~~----~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           89 FNALES----LSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             SSCCSC----CCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CCccce----eCHHHcccCC-ceEEEeeCCCcc
Confidence            555542    3334443333 777777776665

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.04  E-value=1.5e-10  Score=100.70  Aligned_cols=160  Identities=14%  Similarity=0.103  Sum_probs=95.6

Q ss_pred             cCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhcc--CCCCCCEEEccCC--cccCccCCCcccccc
Q 036258          153 VSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFG--NLRFLSLLDLGNN--YLTTRSSTTEWSFLS  228 (331)
Q Consensus       153 ~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~--~~~~L~~L~l~~~--~l~~~~~~~~~~~~~  228 (331)
                      ..+|+|+.|.+.++.-..++. +. +++|++|++..+.+.......+.  .+++|++|+|+.+  ..... ... ..+..
T Consensus       169 ~~~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~-~~~-~~l~~  244 (362)
T 2ra8_A          169 DAMPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFD-GDM-NVFRP  244 (362)
T ss_dssp             HTCTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCC-SCG-GGTGG
T ss_pred             hcCCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccc-hhH-HHHHH
Confidence            367788888887663123333 32 67888888887776543223333  5788888887532  11110 000 01111


Q ss_pred             cc--ccCCCCcEEEeecccccccCCchhhh--ccccccEEEeccCccccc----CCccccCCCCCCEEEccCCCCcccCC
Q 036258          229 SL--TNCIYLKVLGLHSNQLSGILPPLIGN--FSDSLQQFYAYDCELKGS----IPQEIGNLNGLIDLRLQDNDLNGTIP  300 (331)
Q Consensus       229 ~~--~~~~~L~~L~l~~n~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~  300 (331)
                      .+  ..+|+|++|++.+|.+.+..+..+..  ..+.|++|+|+.|.+.+.    ++..+.++++|+.|++++|.+++...
T Consensus       245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~  324 (362)
T 2ra8_A          245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMK  324 (362)
T ss_dssp             GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHH
T ss_pred             HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHH
Confidence            12  35788999999888876544444432  234888899988888753    33344567888899998888875433


Q ss_pred             cCccC-CCCCCeEeccCCe
Q 036258          301 TTVGR-LQQLQGLFLFGNN  318 (331)
Q Consensus       301 ~~l~~-l~~L~~L~l~~n~  318 (331)
                      ..+.. +  ...+++++++
T Consensus       325 ~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          325 KELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHHHHHC--CSEEECCSBC
T ss_pred             HHHHHHc--CCEEEecCCc
Confidence            33332 2  3557777765

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.84  E-value=9.7e-07  Score=77.48  Aligned_cols=245  Identities=13%  Similarity=0.112  Sum_probs=156.0

Q ss_pred             hcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccc
Q 036258           51 FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKL  130 (331)
Q Consensus        51 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L  130 (331)
                      |....+|+.+.+.. .++ .|++..|.+|.+|+.+.+..+ ++.+...+|.++ +|+.+.+..+ +......+|.. .+|
T Consensus        42 ~~~~~~i~~v~ip~-~vt-~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L  115 (379)
T 4h09_A           42 YKDRDRISEVRVNS-GIT-SIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDL  115 (379)
T ss_dssp             GGGGGGCSEEEECT-TEE-EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCC
T ss_pred             cccccCCEEEEeCC-Ccc-ChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCc
Confidence            56667899998854 576 888999999999999999765 665666778776 6888877654 44233445544 478


Q ss_pred             cccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCC-cccccCCCCCceeeCcCcccc-----------------
Q 036258          131 RSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTI-PNSITNASELTLLELGKNSFS-----------------  192 (331)
Q Consensus       131 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~-~~~~~~l~~L~~L~l~~n~~~-----------------  192 (331)
                      +.+.+..+ ..    .+...+|.. .+++.+.+..+ +..+ ...+..+..++.+.+......                 
T Consensus       116 ~~i~lp~~-~~----~i~~~~F~~-~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (379)
T 4h09_A          116 DDFEFPGA-TT----EIGNYIFYN-SSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILE  188 (379)
T ss_dssp             SEEECCTT-CC----EECTTTTTT-CCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEE
T ss_pred             ccccCCCc-cc----ccccccccc-ceeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceec
Confidence            88887432 11    333445533 35666665443 2222 244555666666554432111                 


Q ss_pred             ------------------ccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchh
Q 036258          193 ------------------GLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLI  254 (331)
Q Consensus       193 ------------------~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~  254 (331)
                                        ......+..+..++.+.+..+ +..+       ....+..+..|+.+.+..+ ++.....++
T Consensus       189 ~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i-------~~~~f~~~~~L~~i~lp~~-v~~I~~~aF  259 (379)
T 4h09_A          189 SYPAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTL-------GDGAFYGMKALDEIAIPKN-VTSIGSFLL  259 (379)
T ss_dssp             ECCTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEE-------CTTTTTTCSSCCEEEECTT-CCEECTTTT
T ss_pred             cccccccccccccccceeEEeecccccccccceeeeccc-eeEE-------ccccccCCccceEEEcCCC-ccEeCcccc
Confidence                              011223344455666555433 2222       2334778888999998765 443334444


Q ss_pred             hhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEeccCCeee
Q 036258          255 GNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQ  320 (331)
Q Consensus       255 ~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~  320 (331)
                      .... .++.+.+..+ +.......+.++.+|+.+.+.++.++.....+|.++.+|+.+.+.++ ++
T Consensus       260 ~~~~-~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~  322 (379)
T 4h09_A          260 QNCT-ALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK  322 (379)
T ss_dssp             TTCT-TCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC
T ss_pred             ceee-hhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-cc
Confidence            4443 8898888654 44455678899999999999998888666678999999999999654 44

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.84  E-value=1.5e-09  Score=94.42  Aligned_cols=142  Identities=15%  Similarity=0.116  Sum_probs=96.8

Q ss_pred             CcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCcccccccc--ccCCCCcEEEeec--ccc
Q 036258          171 IPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSL--TNCIYLKVLGLHS--NQL  246 (331)
Q Consensus       171 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~--~~~~~L~~L~l~~--n~~  246 (331)
                      +...+..++.|+.|.++++.-.. .+. +. .++|++|++..+.+..       +....+  ..+|+|++|+|..  +..
T Consensus       164 L~~ll~~~P~L~~L~L~g~~~l~-l~~-~~-~~~L~~L~L~~~~l~~-------~~l~~l~~~~lp~L~~L~L~~~~~~~  233 (362)
T 2ra8_A          164 LSPVLDAMPLLNNLKIKGTNNLS-IGK-KP-RPNLKSLEIISGGLPD-------SVVEDILGSDLPNLEKLVLYVGVEDY  233 (362)
T ss_dssp             CHHHHHTCTTCCEEEEECCBTCB-CCS-CB-CTTCSEEEEECSBCCH-------HHHHHHHHSBCTTCCEEEEECBCGGG
T ss_pred             HHHHHhcCCCCcEEEEeCCCCce-ecc-cc-CCCCcEEEEecCCCCh-------HHHHHHHHccCCCCcEEEEecccccc
Confidence            44566778999999998873222 222 33 7899999999888764       222223  3789999999863  221


Q ss_pred             ccc-----CCchhh-hccccccEEEeccCcccccCCccc---cCCCCCCEEEccCCCCccc----CCcCccCCCCCCeEe
Q 036258          247 SGI-----LPPLIG-NFSDSLQQFYAYDCELKGSIPQEI---GNLNGLIDLRLQDNDLNGT----IPTTVGRLQQLQGLF  313 (331)
Q Consensus       247 ~~~-----~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~l---~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~  313 (331)
                      .+.     +...+. ...++|++|++.+|.+.+..+..+   ..+++|+.|+++.|.+.+.    ++..+..+++|+.|+
T Consensus       234 ~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~  313 (362)
T 2ra8_A          234 GFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFIN  313 (362)
T ss_dssp             TCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEE
T ss_pred             ccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEE
Confidence            111     111221 123499999999999875443333   2578999999999999863    344456689999999


Q ss_pred             ccCCeeeec
Q 036258          314 LFGNNLQGS  322 (331)
Q Consensus       314 l~~n~~~~~  322 (331)
                      +++|.++..
T Consensus       314 L~~n~i~d~  322 (362)
T 2ra8_A          314 MKYNYLSDE  322 (362)
T ss_dssp             CCSBBCCHH
T ss_pred             CCCCcCCHH
Confidence            999988743

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.70  E-value=1.3e-09  Score=85.86  Aligned_cols=61  Identities=18%  Similarity=0.231  Sum_probs=37.3

Q ss_pred             cccEEEeccCccccc----CCccccCCCCCCEEEc--cCCCCccc----CCcCccCCCCCCeEeccCCeee
Q 036258          260 SLQQFYAYDCELKGS----IPQEIGNLNGLIDLRL--QDNDLNGT----IPTTVGRLQQLQGLFLFGNNLQ  320 (331)
Q Consensus       260 ~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l--~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~  320 (331)
                      .|++|+|++|.+.+.    +...+...+.|++|++  ++|.+...    +.+.+...++|++|++++|.+.
T Consensus        94 ~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A           94 TLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             SCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             CcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            555555555555532    3445566667777777  66777642    2334445577777887777764

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.51  E-value=8.2e-09  Score=81.18  Aligned_cols=14  Identities=14%  Similarity=0.171  Sum_probs=6.8

Q ss_pred             cCCCCCCEEEccCc
Q 036258          101 SKCTQLQHLWLEHN  114 (331)
Q Consensus       101 ~~l~~L~~L~l~~n  114 (331)
                      ...++|++|++++|
T Consensus        33 ~~~~~L~~L~L~~n   46 (185)
T 1io0_A           33 NNDPDLEEVNLNNI   46 (185)
T ss_dssp             TTCTTCCEEECTTC
T ss_pred             hcCCCCCEEEecCC
Confidence            34445555555544

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.34  E-value=2.3e-07  Score=71.35  Aligned_cols=84  Identities=11%  Similarity=0.137  Sum_probs=57.7

Q ss_pred             CCCEEEccCCcccCccCCCccccccccccCCCCcEEEeeccc-ccccCCchhhhc---cccccEEEeccCc-ccccCCcc
Q 036258          204 FLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQ-LSGILPPLIGNF---SDSLQQFYAYDCE-LKGSIPQE  278 (331)
Q Consensus       204 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~---~~~L~~L~l~~~~-~~~~~~~~  278 (331)
                      .|++|++++|.++.       .....+..+++|++|+|++|. +++..-..+...   .++|++|++++|. +++.....
T Consensus        62 ~L~~LDLs~~~Itd-------~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~  134 (176)
T 3e4g_A           62 KIQAIDATDSCIMS-------IGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIA  134 (176)
T ss_dssp             CEEEEEEESCCCCG-------GGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHH
T ss_pred             eEeEEeCcCCCccH-------HHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHH
Confidence            47777777776654       233445677778888887774 665555555543   2368888888874 77665566


Q ss_pred             ccCCCCCCEEEccCCC
Q 036258          279 IGNLNGLIDLRLQDND  294 (331)
Q Consensus       279 l~~l~~L~~L~l~~n~  294 (331)
                      +..+++|+.|++++++
T Consensus       135 L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          135 LHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             GGGCTTCCEEEEESCT
T ss_pred             HhcCCCCCEEECCCCC
Confidence            7778888888888886

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.24  E-value=8.4e-07  Score=73.36  Aligned_cols=78  Identities=24%  Similarity=0.270  Sum_probs=41.5

Q ss_pred             CCCCcEEEeecccccc--cCCchhhhccccccEEEeccCcccccCCccccCCC--CCCEEEccCCCCcccCCc-------
Q 036258          233 CIYLKVLGLHSNQLSG--ILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLN--GLIDLRLQDNDLNGTIPT-------  301 (331)
Q Consensus       233 ~~~L~~L~l~~n~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~--~L~~L~l~~n~l~~~~~~-------  301 (331)
                      +++|++|+|++|.+.+  .++..+..++ +|+.|+|++|.+.+.  ..+..+.  +|++|++.+|++.+..|+       
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~-~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAP-NLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHST-TCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCC-CCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence            4444444444444443  2223333333 555555555555432  1222333  788888888888765542       


Q ss_pred             CccCCCCCCeEe
Q 036258          302 TVGRLQQLQGLF  313 (331)
Q Consensus       302 ~l~~l~~L~~L~  313 (331)
                      .+..+|+|+.||
T Consensus       246 il~~~P~L~~LD  257 (267)
T 3rw6_A          246 IRERFPKLLRLD  257 (267)
T ss_dssp             HHHHCTTCCEES
T ss_pred             HHHHCcccCeEC
Confidence            355678888775

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.22  E-value=7.8e-07  Score=73.55  Aligned_cols=112  Identities=21%  Similarity=0.262  Sum_probs=62.5

Q ss_pred             CCcchhcCCCCccE--EEcCCCcCccCCCh---hhhcCCCCCcEEEccCCcccc--cCCccCcCCCCCCEEEccCccccc
Q 036258           46 LTKNCFYNISSLKM--IRLSSNSLSGSLPN---DLCNRLPSLEQLVLRSNGFFG--QIPLSLSKCTQLQHLWLEHNKFTG  118 (331)
Q Consensus        46 ~~~~~~~~~~~L~~--L~l~~~~i~~~~~~---~~~~~~~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~l~~n~~~~  118 (331)
                      +....|...+.|+.  ++++.|... .++.   .+...+++|+.|+|++|.+.+  .++..+..+++|+.|+|++|.+++
T Consensus       132 LdLs~l~~dp~L~~~~l~l~~N~~~-~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~  210 (267)
T 3rw6_A          132 LDLKGLRSDPDLVAQNIDVVLNRRS-CMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS  210 (267)
T ss_dssp             EECTTGGGCHHHHHTTCCCCTTSHH-HHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS
T ss_pred             cCHHHcCCCcchhhcCccccCCHHH-HHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC
Confidence            33334555555665  556666432 2221   122456777777777777765  334445567777777777777763


Q ss_pred             cCCccccCcc--cccccccCccccccccccCC------cchhcCCCCCcEEEc
Q 036258          119 RLPENIGNLS--KLRSLVLGHKAHNSLHGHLP------STLSVSLPNLKWLAL  163 (331)
Q Consensus       119 ~~~~~~~~l~--~L~~L~l~~~~~~~~~~~~~------~~~~~~l~~L~~L~l  163 (331)
                      .  ..+..+.  +|++|++.+|....   .++      ..+...+|+|+.|+-
T Consensus       211 ~--~~l~~l~~l~L~~L~L~~Npl~~---~~~~~~~y~~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          211 E--RELDKIKGLKLEELWLDGNSLCD---TFRDQSTYISAIRERFPKLLRLDG  258 (267)
T ss_dssp             G--GGGGGGTTSCCSEEECTTSTTGG---GCSSHHHHHHHHHHHCTTCCEESS
T ss_pred             c--hhhhhcccCCcceEEccCCcCcc---ccCcchhHHHHHHHHCcccCeECC
Confidence            3  2233333  77777776555442   121      123446777877764

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.21  E-value=2.9e-07  Score=70.77  Aligned_cols=89  Identities=8%  Similarity=0.188  Sum_probs=71.0

Q ss_pred             ccCCCCcEEEeecccccccCCchhhhccccccEEEeccCc-ccccCCccccCC----CCCCEEEccCCC-CcccCCcCcc
Q 036258          231 TNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCE-LKGSIPQEIGNL----NGLIDLRLQDND-LNGTIPTTVG  304 (331)
Q Consensus       231 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~l----~~L~~L~l~~n~-l~~~~~~~l~  304 (331)
                      ..-.+|++|+++++.+++.....+..++ .|++|+|++|. +++.....+..+    ++|++|++++|. +++..-..+.
T Consensus        58 ~~~~~L~~LDLs~~~Itd~GL~~L~~~~-~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~  136 (176)
T 3e4g_A           58 LDKYKIQAIDATDSCIMSIGFDHMEGLQ-YVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH  136 (176)
T ss_dssp             TTCCCEEEEEEESCCCCGGGGGGGTTCS-CCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG
T ss_pred             CCCceEeEEeCcCCCccHHHHHHhcCCC-CCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh
Confidence            3445799999999999877777776665 99999999995 776555556654    479999999986 8765445677


Q ss_pred             CCCCCCeEeccCCe-ee
Q 036258          305 RLQQLQGLFLFGNN-LQ  320 (331)
Q Consensus       305 ~l~~L~~L~l~~n~-~~  320 (331)
                      .+++|++|++++|+ ++
T Consensus       137 ~~~~L~~L~L~~c~~It  153 (176)
T 3e4g_A          137 HFRNLKYLFLSDLPGVK  153 (176)
T ss_dssp             GCTTCCEEEEESCTTCC
T ss_pred             cCCCCCEEECCCCCCCC
Confidence            89999999999987 55

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.59  E-value=8.1e-06  Score=63.93  Aligned_cols=120  Identities=12%  Similarity=0.168  Sum_probs=56.3

Q ss_pred             cCCCCCceeeCcCc-ccccc----CchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccccC
Q 036258          176 TNASELTLLELGKN-SFSGL----VPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGIL  250 (331)
Q Consensus       176 ~~l~~L~~L~l~~n-~~~~~----~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~  250 (331)
                      .+-+.|++|+++++ .+...    +.+.+..-..|+.|+|++|.+...+..   .+...+...+.|++|+|++|.|.+..
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~---alA~aL~~N~tL~~L~L~~N~Ig~~G  114 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEAR---GLIELIETSPSLRVLNVESNFLTPEL  114 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHT---THHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHH---HHHHHHhcCCccCeEecCCCcCCHHH
Confidence            34456666666653 44321    223344444566666666655542221   23333444455555555555554332


Q ss_pred             CchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCC---CCcc----cCCcCccCCCCCCeEeccCCee
Q 036258          251 PPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDN---DLNG----TIPTTVGRLQQLQGLFLFGNNL  319 (331)
Q Consensus       251 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n---~l~~----~~~~~l~~l~~L~~L~l~~n~~  319 (331)
                      ...                     +.+++...+.|++|++++|   .+..    .+.+++...++|+.|+++.|.+
T Consensus       115 a~a---------------------la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          115 LAR---------------------LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHH---------------------HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHH---------------------HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            222                     2233444455666666543   2221    1223344455666666665543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.46  E-value=2.6e-05  Score=61.04  Aligned_cols=73  Identities=11%  Similarity=0.098  Sum_probs=32.2

Q ss_pred             ccccCCCCCceeeCcCcccccc----CchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeeccc
Q 036258          173 NSITNASELTLLELGKNSFSGL----VPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQ  245 (331)
Q Consensus       173 ~~~~~l~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~  245 (331)
                      ..+..-+.|++|++++|.|...    +.+.+..-..|++|+|+++....++......+...+...+.|++|++..+.
T Consensus        92 ~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A           92 ELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence            4444445566666666655432    123344344466666654322111100000233344455556666665444

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.13  E-value=0.00086  Score=48.85  Aligned_cols=57  Identities=23%  Similarity=0.303  Sum_probs=44.8

Q ss_pred             cEEEcCCCcCc-cCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCcccc
Q 036258           58 KMIRLSSNSLS-GSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFT  117 (331)
Q Consensus        58 ~~L~l~~~~i~-~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~  117 (331)
                      ++++.++++++ ..+|..+   .++|+.|+|++|.|+...+..|..+++|++|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCC---CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            47888888774 3677544   457899999999998766777888899999999998775

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.59  E-value=0.0051  Score=44.67  Aligned_cols=55  Identities=25%  Similarity=0.353  Sum_probs=33.5

Q ss_pred             EEEcCCCCCC--CCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCccc
Q 036258          160 WLALGMNKLR--TIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLT  216 (331)
Q Consensus       160 ~L~l~~~~l~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~  216 (331)
                      .++.++++++  .+|..+  ..++++|++++|.+....+..|..+++|++|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            4555666665  666443  235666677777666655566666666666666666554

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=86.71  E-value=1.8  Score=29.35  Aligned_cols=45  Identities=20%  Similarity=0.318  Sum_probs=20.3

Q ss_pred             CCCCCcchhcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccC
Q 036258           43 YSVLTKNCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRS   89 (331)
Q Consensus        43 ~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~   89 (331)
                      ...+...+|.++..|+.+.+-.+ ++ .|....|.+|.+|+.+.+..
T Consensus         8 vt~I~~~aF~~c~~L~~i~iP~~-v~-~Ig~~aF~~C~~L~~i~~~~   52 (100)
T 2lz0_A            8 VVGMDKSLFAGNTVIREITVQPN-IG-LLYDGMFSGCTALEKLILTG   52 (100)
T ss_dssp             CCSSCSCTTTTCTTCCCEEECTT-SS-CCCTTSSTTCTTCCCEEECC
T ss_pred             cCEecHHHhcCCCCCcEEEcCCc-hh-eEcHHHHhccCCccEEEEcC
Confidence            33444444555555555544322 32 34444444444454444443

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=86.59  E-value=1.8  Score=29.40  Aligned_cols=49  Identities=16%  Similarity=0.212  Sum_probs=41.1

Q ss_pred             CCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCc
Q 036258           64 SNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHN  114 (331)
Q Consensus        64 ~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n  114 (331)
                      +..++ .|....|.+|..|+.+.+..+ ++.+...+|.++.+|+.+.+...
T Consensus         5 g~~vt-~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~   53 (100)
T 2lz0_A            5 GEPVV-GMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE   53 (100)
T ss_dssp             CCCCC-SSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred             CCccC-EecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence            44566 788889999999999999875 55566778999999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	331
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-05
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	7e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	4e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.004

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 62.7 bits (151), Expect = 9e-12
 Identities = 57/276 (20%), Positives = 101/276 (36%), Gaps = 20/276 (7%)

Query: 56  SLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNK 115
            L++++ S   L   +P DL    P    L L++N               L  L L +NK
Sbjct: 11  HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK 66

Query: 116 FTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSI 175
            +   P     L KL  L L      +    LP  +  +L  L+     + K+R    + 
Sbjct: 67  ISKISPGAFAPLVKLERLYL----SKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNG 122

Query: 176 TNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIY 235
            N   +  L       SG+    F  ++ LS + + +  +TT           SLT    
Sbjct: 123 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ----GLPPSLTE--- 175

Query: 236 LKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDL 295
              L L  N+++ +    +    ++L +       +       + N   L +L L +N L
Sbjct: 176 ---LHLDGNKITKVDAASLKGL-NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 231

Query: 296 NGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDLCHWG 331
              +P  +   + +Q ++L  NN+     +D C  G
Sbjct: 232 V-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG 266

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 62.7 bits (151), Expect = 9e-12
 Identities = 49/273 (17%), Positives = 101/273 (36%), Gaps = 25/273 (9%)

Query: 55  SSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHN 114
               ++ L +N ++     D  N L +L  L+L +N      P + +   +L+ L+L  N
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKN-LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89

Query: 115 KFTGRLPENIGNLSKLRSLVLG-HKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPN 173
           +      +    L +LR       K   S+   L   + V L      + G+        
Sbjct: 90  QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI-----ENG 144

Query: 174 SITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNC 233
           +     +L+ + +   + + +      +L     L L  N +T   +       +SL   
Sbjct: 145 AFQGMKKLSYIRIADTNITTIPQGLPPSLTE---LHLDGNKITKVDA-------ASLKGL 194

Query: 234 IYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDN 293
             L  LGL  N +S +    + N    L++ +  + +L   +P  + +   +  + L +N
Sbjct: 195 NNLAKLGLSFNSISAVDNGSLANTPH-LRELHLNNNKLV-KVPGGLADHKYIQVVYLHNN 252

Query: 294 DLNG------TIPTTVGRLQQLQGLFLFGNNLQ 320
           +++         P    +     G+ LF N +Q
Sbjct: 253 NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.6 bits (96), Expect = 7e-05
 Identities = 34/181 (18%), Positives = 69/181 (38%), Gaps = 14/181 (7%)

Query: 46  LTKNCFYNISSLKMIRLSSNSLSGS-LPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCT 104
           + K+ F  ++ + ++ L +N L  S + N     +  L  + +          +      
Sbjct: 115 VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI---TTIPQGLPP 171

Query: 105 QLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALG 164
            L  L L+ NK T     ++  L+ L  L L   + +++     +      P+L+ L L 
Sbjct: 172 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT----PHLRELHLN 227

Query: 165 MNKLRTIPNSITNASELTLLELGKNSFSGLVPNTF------GNLRFLSLLDLGNNYLTTR 218
            NKL  +P  + +   + ++ L  N+ S +  N F            S + L +N +   
Sbjct: 228 NNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW 287

Query: 219 S 219
            
Sbjct: 288 E 288

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 60.5 bits (145), Expect = 5e-11
 Identities = 65/321 (20%), Positives = 117/321 (36%), Gaps = 33/321 (10%)

Query: 27  TDQSALLAFKAHIADPYSV----------------LTKNCFYNISSLKMIRLSSNSLSG- 69
            D+ ALL  K  + +P ++                +  +       +  + LS  +L   
Sbjct: 6   QDKQALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKP 65

Query: 70  -SLPNDLCNRLPSLEQLVLRSNGFF-GQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNL 127
             +P+ L N LP L  L +       G IP +++K TQL +L++ H   +G +P+ +  +
Sbjct: 66  YPIPSSLAN-LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI 124

Query: 128 SKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELG 187
             L +      ++N+L G LP ++S     +     G      IP+S  + S+L      
Sbjct: 125 KTLVT---LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI 181

Query: 188 KNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLS 247
             +              L+ +DL  N L   +S    S  ++    +    L     ++ 
Sbjct: 182 SRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVG 241

Query: 248 GILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQ 307
                   +  +           + G++PQ +  L  L  L +  N+L G IP   G LQ
Sbjct: 242 LSKNLNGLDLRN---------NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQ 291

Query: 308 QLQGLFLFGNNLQGSIPSDLC 328
           +        N      P   C
Sbjct: 292 RFDVSAYANNKCLCGSPLPAC 312

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 60.0 bits (144), Expect = 9e-11
 Identities = 49/203 (24%), Positives = 84/203 (41%), Gaps = 25/203 (12%)

Query: 49  NCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQH 108
           +    +++L+ +  ++N +S   P  +     +L++L L  N        +L+  T L  
Sbjct: 191 SVLAKLTNLESLIATNNQISDITPLGIL---TNLDELSLNGNQLKD--IGTLASLTNLTD 245

Query: 109 LWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKL 168
           L L +N+ +   P  +  L+KL  L LG    +++           L  L  L L  N+ 
Sbjct: 246 LDLANNQISNLAP--LSGLTKLTELKLGANQISNISPL------AGLTALTNLELNENQ- 296

Query: 169 RTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLS 228
               + I+N   LT L L  N+ S + P    +L  L  L   NN ++          +S
Sbjct: 297 LEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD---------VS 345

Query: 229 SLTNCIYLKVLGLHSNQLSGILP 251
           SL N   +  L    NQ+S + P
Sbjct: 346 SLANLTNINWLSAGHNQISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 55.8 bits (133), Expect = 2e-09
 Identities = 43/191 (22%), Positives = 78/191 (40%), Gaps = 26/191 (13%)

Query: 140 HNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTF 199
           +N +    P  +     NL  L+L  N+L+ I  ++ + + LT L+L  N  S L P   
Sbjct: 206 NNQISDITPLGIL---TNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP--L 259

Query: 200 GNLRFLSLLDLGNNYLTTRSS-------------TTEWSFLSSLTNCIYLKVLGLHSNQL 246
             L  L+ L LG N ++  S                +   +S ++N   L  L L+ N +
Sbjct: 260 SGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNI 319

Query: 247 SGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRL 306
           S I P  + + +  LQ+ +  + ++       + NL  +  L    N ++   P  +  L
Sbjct: 320 SDISP--VSSLT-KLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANL 372

Query: 307 QQLQGLFLFGN 317
            ++  L L   
Sbjct: 373 TRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.5 bits (114), Expect = 5e-07
 Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 7/91 (7%)

Query: 49  NCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQH 108
           +   N+ +L  + L  N++S   P    + L  L++L   +N        SL+  T +  
Sbjct: 301 SPISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFANNKVSD--VSSLANLTNINW 355

Query: 109 LWLEHNKFTGRLPENIGNLSKLRSLVLGHKA 139
           L   HN+ +   P  + NL+++  L L  +A
Sbjct: 356 LSAGHNQISDLTP--LANLTRITQLGLNDQA 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.6 bits (104), Expect = 8e-06
 Identities = 45/272 (16%), Positives = 90/272 (33%), Gaps = 17/272 (6%)

Query: 62  LSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLP 121
           L   +++ ++       L  +  L     G   +    +     L  +   +N+ T   P
Sbjct: 29  LGKTNVTDTVS---QTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQLTDITP 83

Query: 122 ENIGNLSKLRSLVLGHKAHNSLHGHLP---STLSVSLPNLKWLALGMNKLRTIPNSITNA 178
             + NL+KL  +++ +     +         T      N       +  L  +     ++
Sbjct: 84  --LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSS 141

Query: 179 SELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKV 238
           + ++ +       S    +    +  L  L           S+ + S +S L     L+ 
Sbjct: 142 NTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLES 201

Query: 239 LGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGT 298
           L   +NQ+S I P        +L +      +LK      + +L  L DL L +N ++  
Sbjct: 202 LIATNNQISDITPL---GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNL 256

Query: 299 IPTTVGRLQQLQGLFLFGNNLQGSIPSDLCHW 330
            P  +  L +L  L L  N +    P      
Sbjct: 257 AP--LSGLTKLTELKLGANQISNISPLAGLTA 286

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.5 bits (101), Expect = 2e-05
 Identities = 46/312 (14%), Positives = 93/312 (29%), Gaps = 47/312 (15%)

Query: 53  NISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQ------- 105
            +++L  I  S+N L+   P     +L  +     +         L+             
Sbjct: 64  YLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQIT 123

Query: 106 -----------------------LQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNS 142
                                  +  L    +         + +L  L +L    +   S
Sbjct: 124 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDIS 183

Query: 143 LHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNL 202
            +     ++   L NL+ L    N++  I   +   + L  L L  N        T  +L
Sbjct: 184 SNKVSDISVLAKLTNLESLIATNNQISDIT-PLGILTNLDELSLNGNQLKD--IGTLASL 240

Query: 203 RFLSLLDLGNNYLTTRSSTTEWSFLSSL----------TNCIYLKVLGLHSNQLSGILPP 252
             L+ LDL NN ++  +  +  + L+ L          +    L  L       + +   
Sbjct: 241 TNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDI 300

Query: 253 LIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGL 312
              +   +L     Y   +    P  + +L  L  L   +N +  +  +++  L  +  L
Sbjct: 301 SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKV--SDVSSLANLTNINWL 356

Query: 313 FLFGNNLQGSIP 324
               N +    P
Sbjct: 357 SAGHNQISDLTP 368

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.7 bits (135), Expect = 7e-10
 Identities = 58/262 (22%), Positives = 84/262 (32%), Gaps = 29/262 (11%)

Query: 55  SSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHN 114
           ++ + I L  N +S            +L  L L SN        + +    L+ L L  N
Sbjct: 32  AASQRIFLHGNRISHVPAASFRA-CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 115 KFTGRL-PENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTI-P 172
                + P     L +L +L L       L   L       L  L++L L  N L+ +  
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG----LAALQYLYLQDNALQALPD 146

Query: 173 NSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTT---------- 222
           ++  +   LT L L  N  S +    F  L  L  L L  N +                 
Sbjct: 147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206

Query: 223 -------EWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSI 275
                        +L     L+ L L+ N                LQ+F     E+  S+
Sbjct: 207 YLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR--ARPLWAWLQKFRGSSSEVPCSL 264

Query: 276 PQEIGNLNGLIDLRLQDNDLNG 297
           PQ    L G    RL  NDL G
Sbjct: 265 PQ---RLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (117), Expect = 1e-07
 Identities = 42/255 (16%), Positives = 75/255 (29%), Gaps = 33/255 (12%)

Query: 95  QIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNS------------ 142
            +P+ +      Q ++L  N+ +     +      L  L L                   
Sbjct: 25  AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 143 ---------LHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITN-ASELTLLELGKNSFS 192
                        +       L  L  L L    L+ +   +    + L  L L  N+  
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142

Query: 193 GLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPP 252
            L  +TF +L  L+ L L  N ++            +      L  L LH N+++ + P 
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRIS-------SVPERAFRGLHSLDRLLLHQNRVAHVHPH 195

Query: 253 LIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGL 312
              +    +  +   +        + +  L  L  LRL DN               LQ  
Sbjct: 196 AFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDNPWVCDCR-ARPLWAWLQKF 253

Query: 313 FLFGNNLQGSIPSDL 327
               + +  S+P  L
Sbjct: 254 RGSSSEVPCSLPQRL 268

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 4e-06
 Identities = 13/84 (15%), Positives = 26/84 (30%), Gaps = 4/84 (4%)

Query: 56  SLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGF----FGQIPLSLSKCTQLQHLWL 111
            ++ + +    LS +   +L   L   + + L   G        I  +L     L  L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 112 EHNKFTGRLPENIGNLSKLRSLVL 135
             N+        +    +  S  +
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKI 86

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 1e-05
 Identities = 41/221 (18%), Positives = 68/221 (30%), Gaps = 18/221 (8%)

Query: 76  CNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVL 135
            +++ S  ++          +P  L K      L L  N         +   ++L  L L
Sbjct: 6   VSKVASHLEVNCDKRNLT-ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 136 GHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLV 195
                  L           LP L  L L  N+L+++P        LT+L++  N  + L 
Sbjct: 63  DRAELTKLQVDGT------LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLP 116

Query: 196 PNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIG 255
                 L  L  L L  N L T                +        +N L+ +   L+ 
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL-------ANNNLTELPAGLLN 169

Query: 256 NFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLN 296
               +L      +  L  +IP+     + L    L  N   
Sbjct: 170 GLE-NLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 5e-05
 Identities = 34/192 (17%), Positives = 49/192 (25%), Gaps = 40/192 (20%)

Query: 166 NKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWS 225
             L  +P  +    + T+L L +N        T      L+ L+L    LT         
Sbjct: 20  RNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLP 77

Query: 226 FLSSLTNCIY-------------------------------------LKVLGLHSNQLSG 248
            L +L                                                       
Sbjct: 78  VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137

Query: 249 ILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQ 308
            LPP +   +  L++    +  L       +  L  L  L LQ+N L  TIP        
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHL 196

Query: 309 LQGLFLFGNNLQ 320
           L   FL GN   
Sbjct: 197 LPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 3e-04
 Identities = 35/192 (18%), Positives = 49/192 (25%), Gaps = 15/192 (7%)

Query: 55  SSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHN 114
               ++ LS N L       L      L QL L                  L  L    +
Sbjct: 31  KDTTILHLSENLLYTFSLATLMP-YTRLTQLNLDRAELTKLQV-----DGTLPVLG-TLD 83

Query: 115 KFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNS 174
               +L         L +L +   + N L       L       +    G       P  
Sbjct: 84  LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL 143

Query: 175 ITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCI 234
           +T   +L  L L  N+ + L       L  L  L L  N L        ++         
Sbjct: 144 LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL--------YTIPKGFFGSH 195

Query: 235 YLKVLGLHSNQL 246
            L    LH N  
Sbjct: 196 LLPFAFLHGNPW 207

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.3 bits (100), Expect = 2e-05
 Identities = 21/97 (21%), Positives = 34/97 (35%), Gaps = 12/97 (12%)

Query: 87  LRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGH 146
              N    +I         L+ L + +NK    LP     L +L        + N L   
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERL------IASFNHL--- 316

Query: 147 LPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTL 183
             + +     NLK L +  N LR  P+   +  +L +
Sbjct: 317 --AEVPELPQNLKQLHVEYNPLREFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.5 bits (98), Expect = 5e-05
 Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 10/83 (12%)

Query: 49  NCFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQH 108
           +      SL+ + +S+N L      +L    P LE+L+   N    ++P        L+ 
Sbjct: 278 SLCDLPPSLEELNVSNNKLI-----ELPALPPRLERLIASFN-HLAEVPELPQN---LKQ 328

Query: 109 LWLEHNKFTGRLPENIGNLSKLR 131
           L +E+N      P+   ++  LR
Sbjct: 329 LHVEYNPLRE-FPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.7 bits (96), Expect = 8e-05
 Identities = 19/105 (18%), Positives = 32/105 (30%), Gaps = 12/105 (11%)

Query: 103 CTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLA 162
            ++L       N  +  +         L  L + +   N L       L    P L+ L 
Sbjct: 259 LSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSN---NKL-----IELPALPPRLERLI 310

Query: 163 LGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSL 207
              N L  +P    N   L  L +  N      P+   ++  L +
Sbjct: 311 ASFNHLAEVPELPQN---LKQLHVEYNPLREF-PDIPESVEDLRM 351

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (96), Expect = 4e-05
 Identities = 26/148 (17%), Positives = 43/148 (29%), Gaps = 10/148 (6%)

Query: 95  QIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVS 154
           Q+ L +SK        L+      R   ++   +    L        +L       +  +
Sbjct: 11  QLKLIMSKRYDGSQQALDLKGL--RSDPDLVAQNIDVVLNRRSSMAATLRI-----IEEN 63

Query: 155 LPNLKWLALGMNKLRT---IPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLG 211
           +P L  L L  N+L     + + +  A  L +L L  N               L  L L 
Sbjct: 64  IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLD 123

Query: 212 NNYLTTRSSTTEWSFLSSLTNCIYLKVL 239
            N L+           +       L  L
Sbjct: 124 GNSLSDTFRDQSTYISAIRERFPKLLRL 151

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.7 bits (79), Expect = 0.004
 Identities = 24/114 (21%), Positives = 35/114 (30%), Gaps = 7/114 (6%)

Query: 107 QHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMN 166
           + L L H   T     ++  L  +  L L   +HN L    P+    +L  L+ L    N
Sbjct: 1   RVLHLAHKDLTV--LCHLEQLLLVTHLDL---SHNRLRALPPAL--AALRCLEVLQASDN 53

Query: 167 KLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSS 220
            L  +           LL                +   L LL+L  N L     
Sbjct: 54  ALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 107

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	331
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.94
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.91
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.91
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.89
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.88
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.78
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.77
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.76
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.76
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.73
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.73
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.7
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.69
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.68
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.66
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.65
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.64
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.6
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.59
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.56
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.55
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.55
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.54
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.54
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.47
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.46
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.35
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.28
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.24
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.23
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.32
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.22
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.94
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.85
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.53
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.35

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=5.6e-32  Score=231.50  Aligned_cols=286  Identities=30%  Similarity=0.470  Sum_probs=238.1

Q ss_pred             CChhhHHHHHHHHHhccCCCCCCCcc------h---hc--------CCCCccEEEcCCCcCcc--CCChhhhcCCCCCcE
Q 036258           24 NITTDQSALLAFKAHIADPYSVLTKN------C---FY--------NISSLKMIRLSSNSLSG--SLPNDLCNRLPSLEQ   84 (331)
Q Consensus        24 ~~~~~~~~l~~~~~~~~~~~~~~~~~------~---~~--------~~~~L~~L~l~~~~i~~--~~~~~~~~~~~~L~~   84 (331)
                      |.++|+.|+++||..+.+|. .+..|      |   +.        .-.+++.|+++++.+.+  .+|+.+ ..+++|++
T Consensus         3 c~~~e~~aLl~~k~~~~~~~-~l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l-~~L~~L~~   80 (313)
T d1ogqa_           3 CNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL-ANLPYLNF   80 (313)
T ss_dssp             SCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGG-GGCTTCSE
T ss_pred             CCHHHHHHHHHHHHHCCCCC-cCCCCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHH-hcCccccc
Confidence            67899999999999988763 34444      2   11        22369999999998876  478877 78999999


Q ss_pred             EEccC-CcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccccCccccccccccCCcchhcCCCCCcEEEc
Q 036258           85 LVLRS-NGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLAL  163 (331)
Q Consensus        85 L~L~~-n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l  163 (331)
                      |+|++ |.+.+.+|..|+++++|++|++++|++.+..+..+..+.+|+.+++++|.   ....++..+. .+++++++++
T Consensus        81 L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~---~~~~~p~~l~-~l~~L~~l~l  156 (313)
T d1ogqa_          81 LYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA---LSGTLPPSIS-SLPNLVGITF  156 (313)
T ss_dssp             EEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSE---EESCCCGGGG-GCTTCCEEEC
T ss_pred             cccccccccccccccccccccccchhhhccccccccccccccchhhhccccccccc---ccccCchhhc-cCcccceeec
Confidence            99997 78988999999999999999999999998888889999999999996544   4445565555 8999999999


Q ss_pred             CCCCCC-CCcccccCCCCC-ceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEe
Q 036258          164 GMNKLR-TIPNSITNASEL-TLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGL  241 (331)
Q Consensus       164 ~~~~l~-~~~~~~~~l~~L-~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l  241 (331)
                      .+|.+. .+|..+..+..+ +.+.+++|++.+..+..+..+. ...+++..+....       ..+..+..+++++.+++
T Consensus       157 ~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~-~~~l~l~~~~~~~-------~~~~~~~~~~~l~~l~~  228 (313)
T d1ogqa_         157 DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEG-------DASVLFGSDKNTQKIHL  228 (313)
T ss_dssp             CSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEE-------CCGGGCCTTSCCSEEEC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-------ccccccccccccccccc
Confidence            999987 678888778776 8889999999988888887765 4579999887765       45666788999999999


Q ss_pred             ecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEeccCCe-ee
Q 036258          242 HSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNN-LQ  320 (331)
Q Consensus       242 ~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~~  320 (331)
                      .++.+.+.++ .+.... +++.|++++|++++.+|.++.++++|+.|++++|.++|.+|+ ++.+++|+.+++++|+ +.
T Consensus       229 ~~~~l~~~~~-~~~~~~-~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~  305 (313)
T d1ogqa_         229 AKNSLAFDLG-KVGLSK-NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLC  305 (313)
T ss_dssp             CSSEECCBGG-GCCCCT-TCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEE
T ss_pred             cccccccccc-cccccc-ccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCcccc
Confidence            9999986554 455554 999999999999999999999999999999999999998885 6789999999999998 66


Q ss_pred             ec-CCcc
Q 036258          321 GS-IPSD  326 (331)
Q Consensus       321 ~~-~p~~  326 (331)
                      |. +|.+
T Consensus       306 g~plp~c  312 (313)
T d1ogqa_         306 GSPLPAC  312 (313)
T ss_dssp             STTSSCC
T ss_pred             CCCCCCC
Confidence            64 6643

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.94  E-value=2.1e-26  Score=196.51  Aligned_cols=233  Identities=26%  Similarity=0.384  Sum_probs=200.1

Q ss_pred             CCCcEEEccCCcccc--cCCccCcCCCCCCEEEccC-ccccccCCccccCcccccccccCccccccccccCCcchhcCCC
Q 036258           80 PSLEQLVLRSNGFFG--QIPLSLSKCTQLQHLWLEH-NKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLP  156 (331)
Q Consensus        80 ~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~  156 (331)
                      .+++.|+|+++.+.+  .+|..++++++|++|++++ |.+.+.+|..+.++++|++|++++|.+...    +...+..+.
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~----~~~~~~~~~  125 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA----IPDFLSQIK  125 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE----CCGGGGGCT
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhcccccccc----ccccccchh
Confidence            479999999998876  5789999999999999986 789889999999999999999977665432    233344789


Q ss_pred             CCcEEEcCCCCCC-CCcccccCCCCCceeeCcCccccccCchhccCCCCC-CEEEccCCcccCccCCCccccccccccCC
Q 036258          157 NLKWLALGMNKLR-TIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFL-SLLDLGNNYLTTRSSTTEWSFLSSLTNCI  234 (331)
Q Consensus       157 ~L~~L~l~~~~l~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L-~~L~l~~~~l~~~~~~~~~~~~~~~~~~~  234 (331)
                      +|+++++.+|.+. .+|..+..++.++.+++++|.+.+..|..+..+..+ +.++++.|.+...       .+..+..+.
T Consensus       126 ~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~-------~~~~~~~l~  198 (313)
T d1ogqa_         126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK-------IPPTFANLN  198 (313)
T ss_dssp             TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEE-------CCGGGGGCC
T ss_pred             hhcccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccc-------ccccccccc
Confidence            9999999999866 678899999999999999999998888888887775 8999999998863       344455555


Q ss_pred             CCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEec
Q 036258          235 YLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFL  314 (331)
Q Consensus       235 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l  314 (331)
                       ...+++..+...+.+|..+.... +++.+++.+|.+.+.++ .+..+++|+.|++++|++++.+|+.+.++++|++|++
T Consensus       199 -~~~l~l~~~~~~~~~~~~~~~~~-~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~L  275 (313)
T d1ogqa_         199 -LAFVDLSRNMLEGDASVLFGSDK-NTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV  275 (313)
T ss_dssp             -CSEEECCSSEEEECCGGGCCTTS-CCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEEC
T ss_pred             -ccccccccccccccccccccccc-ccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEEC
Confidence             45799999998888888877776 99999999999986554 6888999999999999999999999999999999999


Q ss_pred             cCCeeeecCCcc
Q 036258          315 FGNNLQGSIPSD  326 (331)
Q Consensus       315 ~~n~~~~~~p~~  326 (331)
                      ++|+++|.+|+.
T Consensus       276 s~N~l~g~iP~~  287 (313)
T d1ogqa_         276 SFNNLCGEIPQG  287 (313)
T ss_dssp             CSSEEEEECCCS
T ss_pred             cCCcccccCCCc
Confidence            999999999973

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1e-25  Score=189.50  Aligned_cols=256  Identities=21%  Similarity=0.245  Sum_probs=194.9

Q ss_pred             ccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccccC
Q 036258           57 LKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLG  136 (331)
Q Consensus        57 L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~  136 (331)
                      -..+..++++++ ++|..+   .+.+++|+|++|.|+...+.+|.++++|++|++++|.+....+..+.....++.+...
T Consensus        13 ~~~v~c~~~~L~-~iP~~i---p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~   88 (284)
T d1ozna_          13 KVTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS   88 (284)
T ss_dssp             SCEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CeEEEcCCCCCC-ccCCCC---CCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccc
Confidence            345678888888 888766   4678999999999987777789999999999999999987777778888888887663


Q ss_pred             ccccccccccCCcchhcCCCCCcEEEcCCCCCCCCc-ccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcc
Q 036258          137 HKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIP-NSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYL  215 (331)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l  215 (331)
                         .......++...+..+++|++|++.+|.+..++ ..+...++|+.+++++|.+..+.+..|..+++|++|++++|.+
T Consensus        89 ---~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l  165 (284)
T d1ozna_          89 ---DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI  165 (284)
T ss_dssp             ---SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             ---cccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcc
Confidence               222223455555668889999999998887554 5667778899999999998877778888888899999999988


Q ss_pred             cCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCC
Q 036258          216 TTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDL  295 (331)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l  295 (331)
                      ..++       +..+..+++|+++++.+|.+.+..|..+..++ ++++|++++|.+.+..+.++.++++|+.|++++|++
T Consensus       166 ~~l~-------~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~-~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l  237 (284)
T d1ozna_         166 SSVP-------ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG-RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW  237 (284)
T ss_dssp             CEEC-------TTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             cccc-------hhhhccccccchhhhhhccccccChhHhhhhh-hcccccccccccccccccccccccccCEEEecCCCC
Confidence            7643       34478888999999999998877788887776 899999999998877777888889999999999988


Q ss_pred             cccCCcCccCCCCCCeEeccCCeeeecCCcccc
Q 036258          296 NGTIPTTVGRLQQLQGLFLFGNNLQGSIPSDLC  328 (331)
Q Consensus       296 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~  328 (331)
                      ..+- +...-...++.+....+.++...|..+.
T Consensus       238 ~C~C-~~~~l~~~l~~~~~~~~~~~C~~p~~l~  269 (284)
T d1ozna_         238 VCDC-RARPLWAWLQKFRGSSSEVPCSLPQRLA  269 (284)
T ss_dssp             ECSG-GGHHHHHHHHHCCSEECCCBEEESGGGT
T ss_pred             CCCc-cchHHHHHHHhCcCCCCceEeCCchHHc
Confidence            7321 1111111244555555555555555543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=1.7e-24  Score=183.94  Aligned_cols=251  Identities=20%  Similarity=0.290  Sum_probs=199.8

Q ss_pred             CCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccc
Q 036258           55 SSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLV  134 (331)
Q Consensus        55 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  134 (331)
                      +++++|++++|.++ .+|+..|..+++|++|++++|.+....|..|..+++|++|++++|+++ .+|..+  ...++.|+
T Consensus        31 ~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~-~l~~~~--~~~l~~L~  106 (305)
T d1xkua_          31 PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELR  106 (305)
T ss_dssp             TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSC--CTTCCEEE
T ss_pred             CCCCEEECcCCcCC-CcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccC-cCccch--hhhhhhhh
Confidence            57999999999998 888877789999999999999998777888999999999999999988 455443  35778888


Q ss_pred             cCccccccccccCCcchhcCCCCCcEEEcCCCCCC---CCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEcc
Q 036258          135 LGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLR---TIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLG  211 (331)
Q Consensus       135 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~---~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~  211 (331)
                      +.+|....    ++...+.....+..+....+...   ..+..+..+++|+.+++++|.+... +..  .+++|++|+++
T Consensus       107 ~~~n~l~~----l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l-~~~--~~~~L~~L~l~  179 (305)
T d1xkua_         107 VHENEITK----VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI-PQG--LPPSLTELHLD  179 (305)
T ss_dssp             CCSSCCCB----BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC-CSS--CCTTCSEEECT
T ss_pred             ccccchhh----hhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcccc-Ccc--cCCccCEEECC
Confidence            86655543    34445556778888888777654   2346678889999999999988743 332  35789999999


Q ss_pred             CCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEcc
Q 036258          212 NNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQ  291 (331)
Q Consensus       212 ~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~  291 (331)
                      +|.....       .+..+..++.+++|++++|.+.+..+.++..++ +|+.|+|++|+++ .+|.++.++++|+.|+++
T Consensus       180 ~n~~~~~-------~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~-~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls  250 (305)
T d1xkua_         180 GNKITKV-------DAASLKGLNNLAKLGLSFNSISAVDNGSLANTP-HLRELHLNNNKLV-KVPGGLADHKYIQVVYLH  250 (305)
T ss_dssp             TSCCCEE-------CTGGGTTCTTCCEEECCSSCCCEECTTTGGGST-TCCEEECCSSCCS-SCCTTTTTCSSCCEEECC
T ss_pred             CCcCCCC-------ChhHhhccccccccccccccccccccccccccc-cceeeeccccccc-ccccccccccCCCEEECC
Confidence            9987763       455688999999999999999977787877776 9999999999998 678899999999999999


Q ss_pred             CCCCcccCCcC------ccCCCCCCeEeccCCeee-ecCCc
Q 036258          292 DNDLNGTIPTT------VGRLQQLQGLFLFGNNLQ-GSIPS  325 (331)
Q Consensus       292 ~n~l~~~~~~~------l~~l~~L~~L~l~~n~~~-~~~p~  325 (331)
                      +|+|+......      ....++|+.|++++|+++ ..+++
T Consensus       251 ~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~  291 (305)
T d1xkua_         251 NNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP  291 (305)
T ss_dssp             SSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCG
T ss_pred             CCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCCH
Confidence            99998432223      345678999999999975 35554

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=4.2e-24  Score=181.48  Aligned_cols=246  Identities=22%  Similarity=0.311  Sum_probs=199.8

Q ss_pred             CccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCccccccccc
Q 036258           56 SLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVL  135 (331)
Q Consensus        56 ~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  135 (331)
                      ..+.++.++.+++ ++|..+   .+.+++|++++|+|+...+..|.++++|++|++++|.+....|..|.+++.|++|++
T Consensus        11 ~~~~~~C~~~~L~-~lP~~l---~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l   86 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL   86 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             cCCEEEecCCCCC-ccCCCC---CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecc
Confidence            5678899888888 888876   468999999999998655567899999999999999998777888999999999999


Q ss_pred             CccccccccccCCcchhcCCCCCcEEEcCCCCCCCCc-ccccCCCCCceeeCcCcccc--ccCchhccCCCCCCEEEccC
Q 036258          136 GHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIP-NSITNASELTLLELGKNSFS--GLVPNTFGNLRFLSLLDLGN  212 (331)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~n~~~--~~~~~~l~~~~~L~~L~l~~  212 (331)
                      ++|....+    +..   ..+.++.|.+..+.+..++ ..+.....+..+....+...  ...+..+..+++|+++++++
T Consensus        87 ~~n~l~~l----~~~---~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~  159 (305)
T d1xkua_          87 SKNQLKEL----PEK---MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD  159 (305)
T ss_dssp             CSSCCSBC----CSS---CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS
T ss_pred             cCCccCcC----ccc---hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCcccccc
Confidence            87766544    332   3467889999998888665 44566677788888776543  34456778888999999999


Q ss_pred             CcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccC
Q 036258          213 NYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQD  292 (331)
Q Consensus       213 ~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~  292 (331)
                      |.+..++.          ...++|++|++++|......+..+.... .++.|++++|.+.+..+.++.++++|++|++++
T Consensus       160 n~l~~l~~----------~~~~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~  228 (305)
T d1xkua_         160 TNITTIPQ----------GLPPSLTELHLDGNKITKVDAASLKGLN-NLAKLGLSFNSISAVDNGSLANTPHLRELHLNN  228 (305)
T ss_dssp             SCCCSCCS----------SCCTTCSEEECTTSCCCEECTGGGTTCT-TCCEEECCSSCCCEECTTTGGGSTTCCEEECCS
T ss_pred             CCccccCc----------ccCCccCEEECCCCcCCCCChhHhhccc-cccccccccccccccccccccccccceeeeccc
Confidence            98876432          2357899999999998878888877776 899999999999987788899999999999999


Q ss_pred             CCCcccCCcCccCCCCCCeEeccCCeeeecCCc
Q 036258          293 NDLNGTIPTTVGRLQQLQGLFLFGNNLQGSIPS  325 (331)
Q Consensus       293 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~  325 (331)
                      |+++ .+|.++..+++|++|++++|+++ .+++
T Consensus       229 N~L~-~lp~~l~~l~~L~~L~Ls~N~i~-~i~~  259 (305)
T d1xkua_         229 NKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGS  259 (305)
T ss_dssp             SCCS-SCCTTTTTCSSCCEEECCSSCCC-CCCT
T ss_pred             cccc-ccccccccccCCCEEECCCCccC-ccCh
Confidence            9998 77888999999999999999998 6654

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.4e-23  Score=174.86  Aligned_cols=226  Identities=21%  Similarity=0.266  Sum_probs=189.5

Q ss_pred             EEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccccCccccccccccCCcchhcCCCCCcEEEc
Q 036258           84 QLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLAL  163 (331)
Q Consensus        84 ~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l  163 (331)
                      .+.+++++++ .+|..+.  ..+++|+|++|.++...+..|.++++|++|+++++....+    +...+..+..++.+..
T Consensus        15 ~v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i----~~~~~~~~~~~~~l~~   87 (284)
T d1ozna_          15 TTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI----DAAAFTGLALLEQLDL   87 (284)
T ss_dssp             EEECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE----CTTTTTTCTTCCEEEC
T ss_pred             EEEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccc----cccccccccccccccc
Confidence            4566777766 6666553  5789999999999966667899999999999977766544    3444447788888876


Q ss_pred             -CCCCCCCC-cccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEe
Q 036258          164 -GMNKLRTI-PNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGL  241 (331)
Q Consensus       164 -~~~~l~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l  241 (331)
                       ..+.++.+ +..+..+++|+.|++++|.+....+..+....+|+.+++++|.++.++.       ..+..+++|++|++
T Consensus        88 ~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~-------~~f~~~~~L~~L~l  160 (284)
T d1ozna_          88 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD-------DTFRDLGNLTHLFL  160 (284)
T ss_dssp             CSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-------TTTTTCTTCCEEEC
T ss_pred             ccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccCh-------hHhccccchhhccc
Confidence             45556665 4778999999999999999987777788889999999999999987543       34788999999999


Q ss_pred             ecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEeccCCeeee
Q 036258          242 HSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFLFGNNLQG  321 (331)
Q Consensus       242 ~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~  321 (331)
                      ++|.+....+.++..+. +|+.+++++|.+++..|.++.++++|++|++++|.+.+..+..|..+++|++|++++|++..
T Consensus       161 ~~N~l~~l~~~~f~~l~-~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         161 HGNRISSVPERAFRGLH-SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             CSSCCCEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             ccCcccccchhhhcccc-ccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCC
Confidence            99999877777777776 99999999999998889999999999999999999997777789999999999999999986


Q ss_pred             cCC
Q 036258          322 SIP  324 (331)
Q Consensus       322 ~~p  324 (331)
                      ..+
T Consensus       240 ~C~  242 (284)
T d1ozna_         240 DCR  242 (284)
T ss_dssp             SGG
T ss_pred             Ccc
Confidence            654

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.91  E-value=1.3e-22  Score=177.62  Aligned_cols=148  Identities=28%  Similarity=0.369  Sum_probs=79.9

Q ss_pred             CCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCC
Q 036258          155 LPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCI  234 (331)
Q Consensus       155 l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~  234 (331)
                      +++|+++++.+|.++.++ .+..+++|+.+++++|.+.+..  .+..+++|++|+++++.+..+.         .+..++
T Consensus       218 ~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~---------~~~~~~  285 (384)
T d2omza2         218 LTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNIS---------PLAGLT  285 (384)
T ss_dssp             CTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCG---------GGTTCT
T ss_pred             cCCCCEEECCCCCCCCcc-hhhcccccchhccccCccCCCC--cccccccCCEeeccCcccCCCC---------cccccc
Confidence            344555555555444432 3444455555555555554321  2444555555555555544321         133334


Q ss_pred             CCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEec
Q 036258          235 YLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFL  314 (331)
Q Consensus       235 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l  314 (331)
                      .++.+.+..|.+.+  ...+.... .+++|++++|++.+ ++ .+..+++|++|++++|+++ .++ .+..+++|++|++
T Consensus       286 ~l~~l~~~~n~l~~--~~~~~~~~-~l~~L~ls~n~l~~-l~-~l~~l~~L~~L~L~~n~l~-~l~-~l~~l~~L~~L~l  358 (384)
T d2omza2         286 ALTNLELNENQLED--ISPISNLK-NLTYLTLYFNNISD-IS-PVSSLTKLQRLFFANNKVS-DVS-SLANLTNINWLSA  358 (384)
T ss_dssp             TCSEEECCSSCCSC--CGGGGGCT-TCSEEECCSSCCSC-CG-GGGGCTTCCEEECCSSCCC-CCG-GGGGCTTCCEEEC
T ss_pred             cccccccccccccc--ccccchhc-ccCeEECCCCCCCC-Cc-ccccCCCCCEEECCCCCCC-CCh-hHcCCCCCCEEEC
Confidence            44444444444432  11223333 77777777777764 32 3667777777777777776 343 4677777777777


Q ss_pred             cCCeeee
Q 036258          315 FGNNLQG  321 (331)
Q Consensus       315 ~~n~~~~  321 (331)
                      ++|++++
T Consensus       359 ~~N~l~~  365 (384)
T d2omza2         359 GHNQISD  365 (384)
T ss_dssp             CSSCCCB
T ss_pred             CCCcCCC
Confidence            7777773

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=7.5e-23  Score=170.08  Aligned_cols=200  Identities=28%  Similarity=0.302  Sum_probs=116.3

Q ss_pred             cCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCccccc
Q 036258           52 YNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLR  131 (331)
Q Consensus        52 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~  131 (331)
                      .+...+.+++.++++++ .+|+.+   .+++++|+|++|.+++..+.+|.++++|++|++++|.++. ++ .++.+++|+
T Consensus         7 ~~~~~~~~v~C~~~~L~-~iP~~l---p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~   80 (266)
T d1p9ag_           7 SKVASHLEVNCDKRNLT-ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLG   80 (266)
T ss_dssp             ECSTTCCEEECTTSCCS-SCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCC
T ss_pred             cccCCCeEEEccCCCCC-eeCcCc---CcCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-ccccccccc
Confidence            45566777899998888 788765   3678999999999886666778889999999999988873 32 234566666


Q ss_pred             ccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCc-ccccCCCCCceeeCcCccccccCchhccCCCCCCEEEc
Q 036258          132 SLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIP-NSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDL  210 (331)
Q Consensus       132 ~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l  210 (331)
                      +|++++|.....    +. .+..+++|++|+++++.+..++ ..+..+.++++|++++|.+....+..+..++.++++++
T Consensus        81 ~L~Ls~N~l~~~----~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l  155 (266)
T d1p9ag_          81 TLDLSHNQLQSL----PL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL  155 (266)
T ss_dssp             EEECCSSCCSSC----CC-CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cccccccccccc----cc-ccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccc
Confidence            666654443322    11 1224555555555555554332 33444455555555555555444444455555555555


Q ss_pred             cCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcc
Q 036258          211 GNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCEL  271 (331)
Q Consensus       211 ~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~  271 (331)
                      ++|.++.++       +..+..+++|++|+|++|+++ .+|..+.... +|+.|+|++|.+
T Consensus       156 ~~N~l~~~~-------~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~-~L~~L~L~~Np~  207 (266)
T d1p9ag_         156 ANNNLTELP-------AGLLNGLENLDTLLLQENSLY-TIPKGFFGSH-LLPFAFLHGNPW  207 (266)
T ss_dssp             TTSCCSCCC-------TTTTTTCTTCCEEECCSSCCC-CCCTTTTTTC-CCSEEECCSCCB
T ss_pred             ccccccccC-------ccccccccccceeecccCCCc-ccChhHCCCC-CCCEEEecCCCC
Confidence            555554432       122444555555555555554 4444443333 455555554443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=5.7e-22  Score=164.68  Aligned_cols=201  Identities=22%  Similarity=0.218  Sum_probs=160.3

Q ss_pred             CCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccccCccccccccccCCcchhcCCCC
Q 036258           78 RLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPN  157 (331)
Q Consensus        78 ~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~  157 (331)
                      ....+...+.+++.++ .+|..+.  +++++|+|++|.++...+..|.++++|++|++++|.+..+.    .  +..+++
T Consensus         8 ~~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~----~--~~~l~~   78 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ----V--DGTLPV   78 (266)
T ss_dssp             CSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE----C--CSCCTT
T ss_pred             ccCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccccc----c--cccccc
Confidence            4566777899998887 5676653  57999999999998666678899999999999887766442    1  236889


Q ss_pred             CcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCc
Q 036258          158 LKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLK  237 (331)
Q Consensus       158 L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~  237 (331)
                      |++|++++|.+...+..+..+++|+.|+++++.+....+..+..+.++++|++++|.+..++.       ..+..+++++
T Consensus        79 L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~-------~~~~~l~~l~  151 (266)
T d1p9ag_          79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP-------GLLTPTPKLE  151 (266)
T ss_dssp             CCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT-------TTTTTCTTCC
T ss_pred             ccccccccccccccccccccccccccccccccccceeeccccccccccccccccccccceecc-------ccccccccch
Confidence            999999999988878888888999999999998887777778888889999999988887533       3366788888


Q ss_pred             EEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCc
Q 036258          238 VLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLN  296 (331)
Q Consensus       238 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~  296 (331)
                      .+++++|++.+..+..+..+. +|++|+|++|+++ .+|..+..+++|+.|++++|++.
T Consensus       152 ~l~l~~N~l~~~~~~~~~~l~-~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         152 KLSLANNNLTELPAGLLNGLE-NLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             EEECTTSCCSCCCTTTTTTCT-TCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             hcccccccccccCcccccccc-ccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            888888888866666666665 8888888888887 67777778888888888888765

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.88  E-value=2.4e-21  Score=169.33  Aligned_cols=249  Identities=24%  Similarity=0.347  Sum_probs=169.4

Q ss_pred             CCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccc
Q 036258           53 NISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRS  132 (331)
Q Consensus        53 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  132 (331)
                      .+.+|++|++++++|+ .+. ++ +.+++|++|++++|++++. + .++++++|++|++++|.+... + .+.++++|+.
T Consensus        42 ~l~~l~~L~l~~~~I~-~l~-gl-~~L~nL~~L~Ls~N~l~~l-~-~l~~L~~L~~L~L~~n~i~~i-~-~l~~l~~L~~  114 (384)
T d2omza2          42 DLDQVTTLQADRLGIK-SID-GV-EYLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQIADI-T-PLANLTNLTG  114 (384)
T ss_dssp             HHTTCCEEECCSSCCC-CCT-TG-GGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCCC-G-GGTTCTTCCE
T ss_pred             HhCCCCEEECCCCCCC-Ccc-cc-ccCCCCCEEeCcCCcCCCC-c-cccCCcccccccccccccccc-c-cccccccccc
Confidence            4455666666666665 442 23 4566666666666666533 2 256666666666666666532 1 2556666666


Q ss_pred             cccCccccccccc-----------------------------------------------------------cCCcchhc
Q 036258          133 LVLGHKAHNSLHG-----------------------------------------------------------HLPSTLSV  153 (331)
Q Consensus       133 L~l~~~~~~~~~~-----------------------------------------------------------~~~~~~~~  153 (331)
                      +++.++.......                                                           ........
T Consensus       115 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (384)
T d2omza2         115 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLA  194 (384)
T ss_dssp             EECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGG
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccc
Confidence            6655432221100                                                           00112234


Q ss_pred             CCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccC
Q 036258          154 SLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNC  233 (331)
Q Consensus       154 ~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~  233 (331)
                      .+++++.+.+.++.+..++. ....++|++|++++|.+...  ..+..+++|+.+++++|.+...         ..+..+
T Consensus       195 ~l~~~~~l~l~~n~i~~~~~-~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~---------~~~~~~  262 (384)
T d2omza2         195 KLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNL---------APLSGL  262 (384)
T ss_dssp             GCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC---------GGGTTC
T ss_pred             cccccceeeccCCccCCCCc-ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCC---------Cccccc
Confidence            67888899998888876653 45578899999999988753  3577888999999999988753         237788


Q ss_pred             CCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEe
Q 036258          234 IYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLF  313 (331)
Q Consensus       234 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  313 (331)
                      ++|++|+++++++.+..+  +.... .++.+.+..|.+.+  ...+..+++++.|++++|.+++ ++ .+..+++|++|+
T Consensus       263 ~~L~~L~l~~~~l~~~~~--~~~~~-~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~-l~-~l~~l~~L~~L~  335 (384)
T d2omza2         263 TKLTELKLGANQISNISP--LAGLT-ALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISD-IS-PVSSLTKLQRLF  335 (384)
T ss_dssp             TTCSEEECCSSCCCCCGG--GTTCT-TCSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSC-CG-GGGGCTTCCEEE
T ss_pred             ccCCEeeccCcccCCCCc--ccccc-cccccccccccccc--ccccchhcccCeEECCCCCCCC-Cc-ccccCCCCCEEE
Confidence            899999999998874332  34444 88999999998873  3457889999999999999985 43 378899999999


Q ss_pred             ccCCeeeecCCccccC
Q 036258          314 LFGNNLQGSIPSDLCH  329 (331)
Q Consensus       314 l~~n~~~~~~p~~~~~  329 (331)
                      +++|+++ .+| .+.+
T Consensus       336 L~~n~l~-~l~-~l~~  349 (384)
T d2omza2         336 FANNKVS-DVS-SLAN  349 (384)
T ss_dssp             CCSSCCC-CCG-GGGG
T ss_pred             CCCCCCC-CCh-hHcC
Confidence            9999998 565 3444

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.7e-18  Score=141.42  Aligned_cols=221  Identities=16%  Similarity=0.194  Sum_probs=131.5

Q ss_pred             ccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccC-CccccCccccccccc
Q 036258           57 LKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRL-PENIGNLSKLRSLVL  135 (331)
Q Consensus        57 L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l  135 (331)
                      .++++.++..++ ++|+.+   .+++++|++++|.++...+.+|.++++|++|++++|.+...+ +..|..+++++++.+
T Consensus        10 ~~~i~c~~~~l~-~iP~~l---~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~   85 (242)
T d1xwdc1          10 NRVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI   85 (242)
T ss_dssp             SSEEEEESCSCS-SCCSCS---CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEE
T ss_pred             CCEEEEeCCCCC-CcCCCC---CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccc
Confidence            367888888888 888766   357899999999988666667889999999999999876433 345667777777766


Q ss_pred             CccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcc--cccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCC
Q 036258          136 GHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPN--SITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNN  213 (331)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~  213 (331)
                      ..  .+.+ ...+...+..+++|+++++.++.+...+.  .+..++.+..+...++.+....+..+..++          
T Consensus        86 ~~--~n~l-~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~----------  152 (242)
T d1xwdc1          86 EK--ANNL-LYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS----------  152 (242)
T ss_dssp             EC--CTTC-CEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSB----------
T ss_pred             cc--cccc-cccccccccccccccccccchhhhccccccccccccccccccccccccccccccccccccc----------
Confidence            32  1111 12233334456666666666665553321  122223333333333333322222222221          


Q ss_pred             cccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEE-EeccCcccccCCccccCCCCCCEEEccC
Q 036258          214 YLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQF-YAYDCELKGSIPQEIGNLNGLIDLRLQD  292 (331)
Q Consensus       214 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L-~l~~~~~~~~~~~~l~~l~~L~~L~l~~  292 (331)
                                          ..++.|++.+|++.+..+.. .... .+.++ .+.+|+++...+..+.++++|+.|++++
T Consensus       153 --------------------~~l~~L~l~~n~l~~i~~~~-~~~~-~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~  210 (242)
T d1xwdc1         153 --------------------FESVILWLNKNGIQEIHNCA-FNGT-QLDELNLSDNNNLEELPNDVFHGASGPVILDISR  210 (242)
T ss_dssp             --------------------SSCEEEECCSSCCCEECTTT-TTTC-CEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTT
T ss_pred             --------------------ccceeeeccccccccccccc-ccch-hhhccccccccccccccHHHhcCCCCCCEEECCC
Confidence                                24555666666665332222 2222 33333 4566667643345678889999999999


Q ss_pred             CCCcccCCcCccCCCCCCeEeccC
Q 036258          293 NDLNGTIPTTVGRLQQLQGLFLFG  316 (331)
Q Consensus       293 n~l~~~~~~~l~~l~~L~~L~l~~  316 (331)
                      |+++...+..|..+++|+.+++.+
T Consensus       211 N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         211 TRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             SCCCCCCSSSCTTCCEEESSSEES
T ss_pred             CcCCccCHHHHcCCcccccCcCCC
Confidence            998844445677777777666544

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.77  E-value=9.4e-17  Score=137.99  Aligned_cols=244  Identities=26%  Similarity=0.305  Sum_probs=140.6

Q ss_pred             CccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCccccccccc
Q 036258           56 SLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVL  135 (331)
Q Consensus        56 ~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  135 (331)
                      ++++|++++++++ .+|+    ..++|++|++++|+++ .+|..   ..+|+.|++++|+++ .++..   .+.|++|++
T Consensus        39 ~l~~LdLs~~~L~-~lp~----~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L  105 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPE----LPPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSDL---PPLLEYLGV  105 (353)
T ss_dssp             TCSEEECTTSCCS-CCCS----CCTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCSC---CTTCCEEEC
T ss_pred             CCCEEEeCCCCCC-CCCC----CCCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhhh---ccccccccc
Confidence            5777777777776 6763    2567777777777776 45543   346777777777665 22221   135777777


Q ss_pred             CccccccccccCCcchhcCCCCCcEEEcCCCCCCCCc-------------------ccccCCCCCceeeCcCcccccc--
Q 036258          136 GHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIP-------------------NSITNASELTLLELGKNSFSGL--  194 (331)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~-------------------~~~~~l~~L~~L~l~~n~~~~~--  194 (331)
                      ++|....+    +. . ..+++|+++++.++.+...+                   ..+..++.++.+.++++.....  
T Consensus       106 ~~n~l~~l----p~-~-~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~  179 (353)
T d1jl5a_         106 SNNQLEKL----PE-L-QNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPD  179 (353)
T ss_dssp             CSSCCSSC----CC-C-TTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCC
T ss_pred             cccccccc----cc-h-hhhccceeeccccccccccccccccccchhhccccccccccccccccceeccccccccccccc
Confidence            65555433    22 1 25667777777666554222                   2234455666676666544321  


Q ss_pred             ----------------CchhccCCCCCCEEEccCCcccCccCCCcc---------ccccccccCCCCcEEEeeccccccc
Q 036258          195 ----------------VPNTFGNLRFLSLLDLGNNYLTTRSSTTEW---------SFLSSLTNCIYLKVLGLHSNQLSGI  249 (331)
Q Consensus       195 ----------------~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~---------~~~~~~~~~~~L~~L~l~~n~~~~~  249 (331)
                                      ....+..++.|+.+++++|.....+.....         .........+.+...++..+.+.+.
T Consensus       180 ~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l  259 (353)
T d1jl5a_         180 LPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGL  259 (353)
T ss_dssp             CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                            011234566788888887765543221100         0000011112233333333222110


Q ss_pred             --CC-------------chhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEec
Q 036258          250 --LP-------------PLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFL  314 (331)
Q Consensus       250 --~~-------------~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l  314 (331)
                        .+             ..+...+++|++|++++|++. .+|..   +++|+.|++++|.|+ .+|+.   +++|++|++
T Consensus       260 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L  331 (353)
T d1jl5a_         260 SELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHV  331 (353)
T ss_dssp             SCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEEC
T ss_pred             ccccchhcccccccCccccccccCCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEEC
Confidence              00             011122348999999999988 56643   578999999999998 67753   458999999


Q ss_pred             cCCeeeecCCccc
Q 036258          315 FGNNLQGSIPSDL  327 (331)
Q Consensus       315 ~~n~~~~~~p~~~  327 (331)
                      ++|+++ ++|+..
T Consensus       332 ~~N~L~-~lp~~~  343 (353)
T d1jl5a_         332 EYNPLR-EFPDIP  343 (353)
T ss_dssp             CSSCCS-SCCCCC
T ss_pred             cCCcCC-CCCccc
Confidence            999998 777543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=9.3e-18  Score=135.60  Aligned_cols=206  Identities=21%  Similarity=0.297  Sum_probs=113.9

Q ss_pred             CccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCccccccccc
Q 036258           56 SLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVL  135 (331)
Q Consensus        56 ~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  135 (331)
                      ++..+++..+.+++.+..   +.+.+|+.|++.+|.++. + ..+..+++|++|++++|.+....  .+..+++++++++
T Consensus        20 ~~~~~~l~~~~~~d~~~~---~~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~   92 (227)
T d1h6ua2          20 NAIKIAAGKSNVTDTVTQ---ADLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELEL   92 (227)
T ss_dssp             HHHHHHTTCSSTTSEECH---HHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEEC
T ss_pred             HHHHHHhCCCCcCCcCCH---HHcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeeccc--ccccccccccccc
Confidence            334456777777644332   457889999999998874 3 35788999999999998876332  2555666666666


Q ss_pred             CccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcc
Q 036258          136 GHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYL  215 (331)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l  215 (331)
                      .++....+.     .+ ..+++|+++.+.++....++                         .+...+.++.+.++.+.+
T Consensus        93 ~~n~~~~i~-----~l-~~l~~L~~l~l~~~~~~~~~-------------------------~~~~~~~~~~l~~~~~~~  141 (227)
T d1h6ua2          93 SGNPLKNVS-----AI-AGLQSIKTLDLTSTQITDVT-------------------------PLAGLSNLQVLYLDLNQI  141 (227)
T ss_dssp             CSCCCSCCG-----GG-TTCTTCCEEECTTSCCCCCG-------------------------GGTTCTTCCEEECCSSCC
T ss_pred             ccccccccc-----cc-cccccccccccccccccccc-------------------------hhccccchhhhhchhhhh
Confidence            444333221     11 14445555555444433221                         233334444444444443


Q ss_pred             cCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCC
Q 036258          216 TTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDL  295 (331)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l  295 (331)
                      ...         ..+..+++|++|++++|.+.+..  .+..++ +|+.|++++|++++ ++ .+.++++|++|++++|++
T Consensus       142 ~~~---------~~~~~~~~L~~L~l~~n~~~~~~--~l~~l~-~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~l  207 (227)
T d1h6ua2         142 TNI---------SPLAGLTNLQYLSIGNAQVSDLT--PLANLS-KLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQI  207 (227)
T ss_dssp             CCC---------GGGGGCTTCCEEECCSSCCCCCG--GGTTCT-TCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCC
T ss_pred             chh---------hhhccccccccccccccccccch--hhcccc-cceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcC
Confidence            321         11344445555555555443211  133333 56666666665542 32 356667777777777777


Q ss_pred             cccCCcCccCCCCCCeEecc
Q 036258          296 NGTIPTTVGRLQQLQGLFLF  315 (331)
Q Consensus       296 ~~~~~~~l~~l~~L~~L~l~  315 (331)
                      + .++ .+..+++|+.|+++
T Consensus       208 t-~i~-~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         208 S-DVS-PLANTSNLFIVTLT  225 (227)
T ss_dssp             C-BCG-GGTTCTTCCEEEEE
T ss_pred             C-CCc-ccccCCCCCEEEee
Confidence            6 343 25667777777765

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=1.2e-17  Score=134.88  Aligned_cols=173  Identities=22%  Similarity=0.323  Sum_probs=119.7

Q ss_pred             hhcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCccc
Q 036258           50 CFYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSK  129 (331)
Q Consensus        50 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~  129 (331)
                      .+..+.+|+.|++.+|.++ .++ ++ ..+++|++|++++|.+.+..  .+..+++|+++++++|.++. + ..+..+++
T Consensus        36 ~~~~l~~L~~L~l~~~~i~-~l~-~l-~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~-i-~~l~~l~~  108 (227)
T d1h6ua2          36 TQADLDGITTLSAFGTGVT-TIE-GV-QYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKN-V-SAIAGLQS  108 (227)
T ss_dssp             CHHHHHTCCEEECTTSCCC-CCT-TG-GGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSC-C-GGGTTCTT
T ss_pred             CHHHcCCcCEEECCCCCCC-cch-hH-hcCCCCcEeecCCceeeccc--cccccccccccccccccccc-c-cccccccc
Confidence            4567789999999999998 774 44 78999999999999987543  38899999999999998873 3 46788999


Q ss_pred             ccccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEE
Q 036258          130 LRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLD  209 (331)
Q Consensus       130 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~  209 (331)
                      |+.++++++......     . +...+.++.+.+..+.+.... .+...++|++|++++|.+...  ..+.++++|++|+
T Consensus       109 L~~l~l~~~~~~~~~-----~-~~~~~~~~~l~~~~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~  179 (227)
T d1h6ua2         109 IKTLDLTSTQITDVT-----P-LAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLK  179 (227)
T ss_dssp             CCEEECTTSCCCCCG-----G-GTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEE
T ss_pred             ccccccccccccccc-----h-hccccchhhhhchhhhhchhh-hhccccccccccccccccccc--hhhcccccceecc
Confidence            999999765544322     1 225677888888777665432 355566777777777766532  2355666666666


Q ss_pred             ccCCcccCccCCCccccccccccCCCCcEEEeeccccc
Q 036258          210 LGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLS  247 (331)
Q Consensus       210 l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~  247 (331)
                      +++|.++.+         ..+..+++|++|++++|+++
T Consensus       180 Ls~n~l~~l---------~~l~~l~~L~~L~Ls~N~lt  208 (227)
T d1h6ua2         180 ADDNKISDI---------SPLASLPNLIEVHLKNNQIS  208 (227)
T ss_dssp             CCSSCCCCC---------GGGGGCTTCCEEECTTSCCC
T ss_pred             cCCCccCCC---------hhhcCCCCCCEEECcCCcCC
Confidence            666655532         11444555555555555544

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=4.4e-17  Score=129.82  Aligned_cols=166  Identities=30%  Similarity=0.432  Sum_probs=115.5

Q ss_pred             CCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccc
Q 036258           53 NISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRS  132 (331)
Q Consensus        53 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  132 (331)
                      .+..|++|+++++.++ .++. + +.+++|++|++++|++++..  .++.+++|++|++++|+++. ++ .+.++++|+.
T Consensus        44 ~L~~L~~L~l~~~~i~-~l~~-l-~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~  116 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIK-SVQG-I-QYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKS  116 (210)
T ss_dssp             HHHTCCEEECTTSCCC-CCTT-G-GGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCE
T ss_pred             HhcCccEEECcCCCCC-Cchh-H-hhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc-cccccccccc
Confidence            4567888999998887 5543 3 67889999999999887533  36788899999999888873 33 4677788888


Q ss_pred             cccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccC
Q 036258          133 LVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGN  212 (331)
Q Consensus       133 L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~  212 (331)
                      |++.++....+.     . +..+++++.+++.++.+...+ .+..+++|+.+++++|++.+..  .+.++++|++|++++
T Consensus       117 L~l~~~~~~~~~-----~-l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n~l~~i~--~l~~l~~L~~L~Ls~  187 (210)
T d1h6ta2         117 LSLEHNGISDIN-----G-LVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSK  187 (210)
T ss_dssp             EECTTSCCCCCG-----G-GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCS
T ss_pred             cccccccccccc-----c-ccccccccccccccccccccc-cccccccccccccccccccccc--cccCCCCCCEEECCC
Confidence            888665544321     1 226677777777777776543 4556777777777777776432  266777777777777


Q ss_pred             CcccCccCCCccccccccccCCCCcEEEeec
Q 036258          213 NYLTTRSSTTEWSFLSSLTNCIYLKVLGLHS  243 (331)
Q Consensus       213 ~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  243 (331)
                      |.++.+        + .+..+++|++|+|++
T Consensus       188 N~i~~l--------~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         188 NHISDL--------R-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             SCCCBC--------G-GGTTCTTCSEEEEEE
T ss_pred             CCCCCC--------h-hhcCCCCCCEEEccC
Confidence            776642        1 366677777777753

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=7.4e-17  Score=127.40  Aligned_cols=163  Identities=21%  Similarity=0.346  Sum_probs=108.3

Q ss_pred             cCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCccccc
Q 036258           52 YNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLR  131 (331)
Q Consensus        52 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~  131 (331)
                      ..++++++|+++++.++ .+. ++ +.+++|++|++++|++++..  .++++++|++|++++|.+.. ++ .+.++++|+
T Consensus        37 ~~l~~l~~L~l~~~~i~-~l~-~l-~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~  109 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIK-SID-GV-EYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIAD-IT-PLANLTNLT  109 (199)
T ss_dssp             HHHTTCCEEECTTSCCC-CCT-TG-GGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CG-GGTTCTTCS
T ss_pred             HHhcCCCEEECCCCCCC-Ccc-cc-ccCCCcCcCccccccccCcc--cccCCccccccccccccccc-cc-ccccccccc
Confidence            45678888888888887 554 33 67888888888888887543  37888888888888887762 22 466777777


Q ss_pred             ccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEcc
Q 036258          132 SLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLG  211 (331)
Q Consensus       132 ~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~  211 (331)
                      .|+++++......     . +..+++|+.+++++|.+..++ .+..+++++.|++.+|++.+.  ..+.++++|++|+++
T Consensus       110 ~L~l~~~~~~~~~-----~-~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L~l~~n~l~~l--~~l~~l~~L~~L~ls  180 (199)
T d2omxa2         110 GLTLFNNQITDID-----P-LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNFSSNQVTDL--KPLANLTTLERLDIS  180 (199)
T ss_dssp             EEECCSSCCCCCG-----G-GTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCCEEECC
T ss_pred             ccccccccccccc-----c-cchhhhhHHhhhhhhhhcccc-cccccccccccccccccccCC--ccccCCCCCCEEECC
Confidence            7777554443321     1 225677777777777766544 466667777777777766643  236666777777777


Q ss_pred             CCcccCccCCCccccccccccCCCCcEE
Q 036258          212 NNYLTTRSSTTEWSFLSSLTNCIYLKVL  239 (331)
Q Consensus       212 ~~~l~~~~~~~~~~~~~~~~~~~~L~~L  239 (331)
                      +|+++.+         +.+..+++|++|
T Consensus       181 ~N~i~~i---------~~l~~L~~L~~L  199 (199)
T d2omxa2         181 SNKVSDI---------SVLAKLTNLESL  199 (199)
T ss_dssp             SSCCCCC---------GGGGGCTTCSEE
T ss_pred             CCCCCCC---------ccccCCCCCCcC
Confidence            7766542         124556666554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=2.1e-16  Score=125.79  Aligned_cols=144  Identities=26%  Similarity=0.365  Sum_probs=99.2

Q ss_pred             CCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccC
Q 036258          154 SLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNC  233 (331)
Q Consensus       154 ~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~  233 (331)
                      .+++|++|++++|.++.++ .+..+++|+.|++++|++.+. + .+..+++|+.|++++|.+..+         ..+..+
T Consensus        66 ~l~~L~~L~L~~n~i~~l~-~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~l~~~~~~~~---------~~l~~l  133 (210)
T d1h6ta2          66 YLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKDL-S-SLKDLKKLKSLSLEHNGISDI---------NGLVHL  133 (210)
T ss_dssp             GCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCG-G-GGTTCTTCCEEECTTSCCCCC---------GGGGGC
T ss_pred             hCCCCCEEeCCCccccCcc-ccccCcccccccccccccccc-c-ccccccccccccccccccccc---------cccccc
Confidence            4566777777777666555 345667777777777776643 2 366677777777777766532         236667


Q ss_pred             CCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEe
Q 036258          234 IYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLF  313 (331)
Q Consensus       234 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  313 (331)
                      ++++.+++++|.+.+  +..+..++ +|+.+++++|.+.+ ++ .+.++++|++|++++|.++ .++ .+..+++|++|+
T Consensus       134 ~~l~~l~~~~n~l~~--~~~~~~l~-~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L~~L~  206 (210)
T d1h6ta2         134 PQLESLYLGNNKITD--ITVLSRLT-KLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLE  206 (210)
T ss_dssp             TTCCEEECCSSCCCC--CGGGGGCT-TCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-BCG-GGTTCTTCSEEE
T ss_pred             ccccccccccccccc--cccccccc-cccccccccccccc-cc-cccCCCCCCEEECCCCCCC-CCh-hhcCCCCCCEEE
Confidence            777788877777653  22344444 78888888888763 33 3778888999999999887 554 578888899988


Q ss_pred             ccC
Q 036258          314 LFG  316 (331)
Q Consensus       314 l~~  316 (331)
                      +++
T Consensus       207 Ls~  209 (210)
T d1h6ta2         207 LFS  209 (210)
T ss_dssp             EEE
T ss_pred             ccC
Confidence            864

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=3e-16  Score=127.85  Aligned_cols=209  Identities=15%  Similarity=0.124  Sum_probs=132.9

Q ss_pred             cEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccccccCccccccccccCCcchhcCCCCCcEEE
Q 036258           83 EQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLA  162 (331)
Q Consensus        83 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~  162 (331)
                      +.+++++..++ .+|..+.  +++++|++++|.++...+..|.+++                            +|++|+
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~----------------------------~L~~L~   59 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFG----------------------------DLEKIE   59 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCT----------------------------TCCEEE
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccc----------------------------hhhhhh
Confidence            45666665555 4454432  3567777777766533333444444                            455555


Q ss_pred             cCCCCCCC-C-cccccCCCCCceeeCcC-ccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEE
Q 036258          163 LGMNKLRT-I-PNSITNASELTLLELGK-NSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVL  239 (331)
Q Consensus       163 l~~~~l~~-~-~~~~~~l~~L~~L~l~~-n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L  239 (331)
                      +++|.+.. + +..|..++.++++.+.. +.+....+..|..+++|++++++++.+...+.      ...+..+..+..+
T Consensus        60 ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~------~~~~~~l~~l~~~  133 (242)
T d1xwdc1          60 ISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD------VHKIHSLQKVLLD  133 (242)
T ss_dssp             EESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCC------CTTTCBSSCEEEE
T ss_pred             hccccccceeeccccccccccccccccccccccccccccccccccccccccchhhhccccc------ccccccccccccc
Confidence            55554432 2 23456666777766543 45555666677778888888888887765321      2224445556666


Q ss_pred             EeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEE-EccCCCCcccCCcCccCCCCCCeEeccCCe
Q 036258          240 GLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDL-RLQDNDLNGTIPTTVGRLQQLQGLFLFGNN  318 (331)
Q Consensus       240 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L-~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  318 (331)
                      ...++.+....+..+...+..++.|++.+|++....+..+ ...++.++ ++.+|.+++..++.|.++++|++|++++|.
T Consensus       134 ~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~-~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~  212 (242)
T d1xwdc1         134 IQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR  212 (242)
T ss_dssp             EESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTT-TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSC
T ss_pred             cccccccccccccccccccccceeeecccccccccccccc-cchhhhccccccccccccccHHHhcCCCCCCEEECCCCc
Confidence            6666677756666666666689999999999985444444 44555555 568888984444578999999999999999


Q ss_pred             eeecCCc-cccCC
Q 036258          319 LQGSIPS-DLCHW  330 (331)
Q Consensus       319 ~~~~~p~-~~~~~  330 (331)
                      ++ .+|+ .+.++
T Consensus       213 l~-~l~~~~~~~l  224 (242)
T d1xwdc1         213 IH-SLPSYGLENL  224 (242)
T ss_dssp             CC-CCCSSSCTTC
T ss_pred             CC-ccCHHHHcCC
Confidence            99 7775 45443

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=3.6e-16  Score=123.37  Aligned_cols=140  Identities=27%  Similarity=0.373  Sum_probs=77.3

Q ss_pred             CCCCCcEEEcCCCCCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccC
Q 036258          154 SLPNLKWLALGMNKLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNC  233 (331)
Q Consensus       154 ~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~  233 (331)
                      .+++|++|++++|.++.++. +..+++|++|++++|.+...  ..+.+++.|++++++++.....         ..+..+
T Consensus        60 ~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~~~~~~~---------~~~~~l  127 (199)
T d2omxa2          60 YLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADI--TPLANLTNLTGLTLFNNQITDI---------DPLKNL  127 (199)
T ss_dssp             GCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCC---------GGGTTC
T ss_pred             cCCCcCcCccccccccCccc-ccCCcccccccccccccccc--cccccccccccccccccccccc---------cccchh
Confidence            34555555555555554433 55556666666666655432  1255566666666666555432         124455


Q ss_pred             CCCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeE
Q 036258          234 IYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGL  312 (331)
Q Consensus       234 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  312 (331)
                      ++|+.|++++|.+. .++ .+.... +++.|++.+|.+++ ++ .++++++|++|++++|+++ .++ .++.+++|++|
T Consensus       128 ~~L~~L~l~~n~l~-~~~-~l~~~~-~L~~L~l~~n~l~~-l~-~l~~l~~L~~L~ls~N~i~-~i~-~l~~L~~L~~L  199 (199)
T d2omxa2         128 TNLNRLELSSNTIS-DIS-ALSGLT-SLQQLNFSSNQVTD-LK-PLANLTTLERLDISSNKVS-DIS-VLAKLTNLESL  199 (199)
T ss_dssp             TTCSEEECCSSCCC-CCG-GGTTCT-TCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-CCG-GGGGCTTCSEE
T ss_pred             hhhHHhhhhhhhhc-ccc-cccccc-cccccccccccccC-Cc-cccCCCCCCEEECCCCCCC-CCc-cccCCCCCCcC
Confidence            66666666666654 222 233333 66666666666652 22 3666677777777777766 332 35666666654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.68  E-value=5.6e-17  Score=127.36  Aligned_cols=109  Identities=26%  Similarity=0.327  Sum_probs=60.6

Q ss_pred             CCCcEEEcCCCCCCC-C-cccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccC
Q 036258          156 PNLKWLALGMNKLRT-I-PNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNC  233 (331)
Q Consensus       156 ~~L~~L~l~~~~l~~-~-~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~  233 (331)
                      +++++|++++|.++. + +..|..+++|++|++++|.+....+..+..+++|++|++++|.+..++.       .+|.++
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~-------~~F~~l  101 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISN-------KMFLGL  101 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECS-------SSSTTC
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCH-------HHHhCC
Confidence            355666666666542 2 2445555666666666666655555555556666666666666554322       235556


Q ss_pred             CCCcEEEeecccccccCCchhhhccccccEEEeccCccc
Q 036258          234 IYLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELK  272 (331)
Q Consensus       234 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~  272 (331)
                      ++|++|+|++|.+.+..+.+|..++ ++++|+|++|.+.
T Consensus       102 ~~L~~L~L~~N~l~~i~~~~f~~l~-~L~~l~L~~N~~~  139 (192)
T d1w8aa_         102 HQLKTLNLYDNQISCVMPGSFEHLN-SLTSLNLASNPFN  139 (192)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCT-TCCEEECTTCCBC
T ss_pred             CcccccccCCccccccCHHHhcCCc-ccccccccccccc
Confidence            6666666666666544444444444 5666666655554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=3.7e-17  Score=136.44  Aligned_cols=254  Identities=17%  Similarity=0.156  Sum_probs=151.9

Q ss_pred             cEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCcccccc-CCccccCcccccccccC
Q 036258           58 KMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGR-LPENIGNLSKLRSLVLG  136 (331)
Q Consensus        58 ~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~  136 (331)
                      +.+|++++.+.......++.  ..+..+.+....+..... ......+|++|+++++.+... +...+..+++|++|++.
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~--~~~~~lrl~~~~~~~~~~-~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~   79 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE   79 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH--TTCSEEECTTCEECSCCC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred             CEEECCCCCCCchHHHHHHh--ccceEeeccccccccchh-hhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccc
Confidence            57788877664333333322  234566665554432222 233456788888888776532 33445677888888886


Q ss_pred             ccccccccccCCcchhcCCCCCcEEEcCCC-CCCC--CcccccCCCCCceeeCcCcc-cccc-Cchhcc-CCCCCCEEEc
Q 036258          137 HKAHNSLHGHLPSTLSVSLPNLKWLALGMN-KLRT--IPNSITNASELTLLELGKNS-FSGL-VPNTFG-NLRFLSLLDL  210 (331)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~--~~~~~~~l~~L~~L~l~~n~-~~~~-~~~~l~-~~~~L~~L~l  210 (331)
                      ++..   .+.....+. .+++|++|+++++ .++.  +......+++|++|++++|. +.+. ....+. .++.|+.|++
T Consensus        80 ~~~l---~~~~~~~l~-~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l  155 (284)
T d2astb2          80 GLRL---SDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL  155 (284)
T ss_dssp             TCBC---CHHHHHHHT-TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred             ccCC---CcHHHHHHh-cCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhh
Confidence            5433   222223333 6778888888775 4541  22334567888888888763 3221 112222 3467888888


Q ss_pred             cCCc--ccCccCCCccccccccccCCCCcEEEeecc-cccccCCchhhhccccccEEEeccC-cccccCCccccCCCCCC
Q 036258          211 GNNY--LTTRSSTTEWSFLSSLTNCIYLKVLGLHSN-QLSGILPPLIGNFSDSLQQFYAYDC-ELKGSIPQEIGNLNGLI  286 (331)
Q Consensus       211 ~~~~--l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n-~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~l~~L~  286 (331)
                      +++.  ++..      .+......+++|++|++++| .+++.....+..++ .|++|++++| .+++.....+..+++|+
T Consensus       156 ~~~~~~i~~~------~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~-~L~~L~L~~C~~i~~~~l~~L~~~~~L~  228 (284)
T d2astb2         156 SGYRKNLQKS------DLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN-YLQHLSLSRCYDIIPETLLELGEIPTLK  228 (284)
T ss_dssp             CSCGGGSCHH------HHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCT-TCCEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred             cccccccccc------cccccccccccccccccccccCCCchhhhhhcccC-cCCEEECCCCCCCChHHHHHHhcCCCCC
Confidence            8763  3221      23334567888999999876 46666667777765 8999999886 56666666788889999


Q ss_pred             EEEccCCCCcccCCcCccCC-CCCCeEeccCCeeeecCCccccC
Q 036258          287 DLRLQDNDLNGTIPTTVGRL-QQLQGLFLFGNNLQGSIPSDLCH  329 (331)
Q Consensus       287 ~L~l~~n~l~~~~~~~l~~l-~~L~~L~l~~n~~~~~~p~~~~~  329 (331)
                      .|++.++ +...   ++..+ +.+..|.+..++++...++.+.+
T Consensus       229 ~L~l~~~-~~d~---~l~~l~~~lp~L~i~~~~ls~~~~~~~~~  268 (284)
T d2astb2         229 TLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARPTIGN  268 (284)
T ss_dssp             EEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred             EEeeeCC-CCHH---HHHHHHHhCccccccCccCCCCCCCccCc
Confidence            9999887 3321   22211 12334456777777655555543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.65  E-value=2.6e-14  Score=122.47  Aligned_cols=237  Identities=24%  Similarity=0.265  Sum_probs=149.3

Q ss_pred             CCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCccccccc
Q 036258           54 ISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSL  133 (331)
Q Consensus        54 ~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  133 (331)
                      .++|++|++++|.++ .+|.    ...+|+.|++.+|.++ .++. +  .+.|++|++++|.+. .+|. +..+++|++|
T Consensus        57 ~~~L~~L~Ls~N~l~-~lp~----~~~~L~~L~l~~n~l~-~l~~-l--p~~L~~L~L~~n~l~-~lp~-~~~l~~L~~L  125 (353)
T d1jl5a_          57 PPHLESLVASCNSLT-ELPE----LPQSLKSLLVDNNNLK-ALSD-L--PPLLEYLGVSNNQLE-KLPE-LQNSSFLKII  125 (353)
T ss_dssp             CTTCSEEECCSSCCS-SCCC----CCTTCCEEECCSSCCS-CCCS-C--CTTCCEEECCSSCCS-SCCC-CTTCTTCCEE
T ss_pred             CCCCCEEECCCCCCc-cccc----chhhhhhhhhhhcccc-hhhh-h--ccccccccccccccc-cccc-hhhhccceee
Confidence            468999999999998 8885    3578999999999876 3332 1  246999999999887 4553 5678899999


Q ss_pred             ccCccccccccccC--------------CcchhcCCCCCcEEEcCCCCCCCCc-------------------ccccCCCC
Q 036258          134 VLGHKAHNSLHGHL--------------PSTLSVSLPNLKWLALGMNKLRTIP-------------------NSITNASE  180 (331)
Q Consensus       134 ~l~~~~~~~~~~~~--------------~~~~~~~l~~L~~L~l~~~~l~~~~-------------------~~~~~l~~  180 (331)
                      ++.++.........              .......++.++.+.+.++....++                   ..+..++.
T Consensus       126 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~  205 (353)
T d1jl5a_         126 DVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPF  205 (353)
T ss_dssp             ECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCCCTTCTT
T ss_pred             ccccccccccccccccccchhhccccccccccccccccceeccccccccccccccccccccccccccccccccccccccc
Confidence            88765543222110              1111235567777777666543211                   22445677


Q ss_pred             CceeeCcCccccccCchhc-----------------cCCCCCCEEEccCCcccCccCC---C------ccccccccccCC
Q 036258          181 LTLLELGKNSFSGLVPNTF-----------------GNLRFLSLLDLGNNYLTTRSST---T------EWSFLSSLTNCI  234 (331)
Q Consensus       181 L~~L~l~~n~~~~~~~~~l-----------------~~~~~L~~L~l~~~~l~~~~~~---~------~~~~~~~~~~~~  234 (331)
                      ++.+++++|..... +...                 .....+...++..+.+.....-   .      ...+......++
T Consensus       206 L~~l~l~~n~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~  284 (353)
T d1jl5a_         206 LTTIYADNNLLKTL-PDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPP  284 (353)
T ss_dssp             CCEEECCSSCCSSC-CSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCT
T ss_pred             cccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccchhcccccccCccccccccCC
Confidence            88888887765432 1111                 1112333444433322211100   0      001111223457


Q ss_pred             CCcEEEeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCcccCCcCccCCCCCCeEec
Q 036258          235 YLKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLNGTIPTTVGRLQQLQGLFL  314 (331)
Q Consensus       235 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l  314 (331)
                      +|++|++++|++. .+|..+    ++|+.|++++|+++ .+|..   +++|++|++++|+++ .+|+..   .+|+.|.+
T Consensus       285 ~L~~L~Ls~N~l~-~lp~~~----~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~~~---~~L~~L~~  351 (353)
T d1jl5a_         285 SLEELNVSNNKLI-ELPALP----PRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPDIP---ESVEDLRM  351 (353)
T ss_dssp             TCCEEECCSSCCS-CCCCCC----TTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCCCC---TTCCEEEC
T ss_pred             CCCEEECCCCccC-cccccc----CCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCccc---cccCeeEC
Confidence            8999999999997 566432    38999999999998 56653   467999999999998 777633   35777776


Q ss_pred             c
Q 036258          315 F  315 (331)
Q Consensus       315 ~  315 (331)
                      .
T Consensus       352 ~  352 (353)
T d1jl5a_         352 N  352 (353)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.64  E-value=8.7e-16  Score=120.42  Aligned_cols=172  Identities=23%  Similarity=0.274  Sum_probs=95.9

Q ss_pred             CcEEEccCCcccccCCccCcCCCCCCEEEccCccccccC-CccccCcccccccccCccccccccccCCcchhcCCCCCcE
Q 036258           82 LEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRL-PENIGNLSKLRSLVLGHKAHNSLHGHLPSTLSVSLPNLKW  160 (331)
Q Consensus        82 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~  160 (331)
                      .+++++++++++ .+|..+.  +++++|+|++|.++..+ +..|.                            .+++|++
T Consensus        10 ~~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~----------------------------~l~~L~~   58 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFG----------------------------RLPHLVK   58 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGG----------------------------GCTTCCE
T ss_pred             CCEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccC----------------------------CCceEee
Confidence            356677777666 4555442  56777777777765322 23334                            4455555


Q ss_pred             EEcCCCCCCCC-cccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEE
Q 036258          161 LALGMNKLRTI-PNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVL  239 (331)
Q Consensus       161 L~l~~~~l~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L  239 (331)
                      |++++|.+..+ +..+..+++|++|++++|++....+++|.++++|++|+|++|.++.++.       .+|..+++|++|
T Consensus        59 L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~-------~~f~~l~~L~~l  131 (192)
T d1w8aa_          59 LELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP-------GSFEHLNSLTSL  131 (192)
T ss_dssp             EECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECT-------TSSTTCTTCCEE
T ss_pred             eeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCH-------HHhcCCcccccc
Confidence            55555555533 2455556666666666666666666666666667777777766665432       236666677777


Q ss_pred             EeecccccccCCchhhhccccccEEEeccCcccccCCccccCCCCCCEEEccCCCCc
Q 036258          240 GLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLN  296 (331)
Q Consensus       240 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~  296 (331)
                      +|++|.+......  ..+...++.+.+..+.++...|..+   ..++.++++.|.+.
T Consensus       132 ~L~~N~~~~~~~~--~~~~~~l~~~~l~~~~~~c~~p~~l---~~~~l~~L~~n~l~  183 (192)
T d1w8aa_         132 NLASNPFNCNCHL--AWFAEWLRKKSLNGGAARCGAPSKV---RDVQIKDLPHSEFK  183 (192)
T ss_dssp             ECTTCCBCCSGGG--HHHHHHHHHHCCSGGGCBBCSSTTT---TTSBGGGSCTTTCC
T ss_pred             cccccccccccch--HHHhhhhhhhcccCCCeEeCCChhh---cCCEeeecCHhhCc
Confidence            7777666532221  1111134444555555554445433   33445566666654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2.3e-16  Score=131.54  Aligned_cols=180  Identities=18%  Similarity=0.189  Sum_probs=83.4

Q ss_pred             CCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCc-cccccCCccccCccccccc
Q 036258           55 SSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHN-KFTGRLPENIGNLSKLRSL  133 (331)
Q Consensus        55 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L  133 (331)
                      .+|++|+++++.+.+.....++..+++|++|++.+|.+....+..++.+++|++|+++++ .++.               
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd---------------  110 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSE---------------  110 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCH---------------
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccc---------------
Confidence            345555555554443322333455555555555555544333344444555555555553 2221               


Q ss_pred             ccCccccccccccCCcchhcCCCCCcEEEcCCCC-CC--CCccccc-CCCCCceeeCcCcc--ccc-cCchhccCCCCCC
Q 036258          134 VLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNK-LR--TIPNSIT-NASELTLLELGKNS--FSG-LVPNTFGNLRFLS  206 (331)
Q Consensus       134 ~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~--~~~~~~~-~l~~L~~L~l~~n~--~~~-~~~~~l~~~~~L~  206 (331)
                                  .....+...+++|++|+++++. ++  .+...+. ..+.|+.|+++++.  +.. ........+++|+
T Consensus       111 ------------~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~  178 (284)
T d2astb2         111 ------------FALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV  178 (284)
T ss_dssp             ------------HHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCS
T ss_pred             ------------cccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccccccccccccccccccccc
Confidence                        0011112245556666655542 22  1111122 23456666665532  221 1122233456666


Q ss_pred             EEEccCCc-ccCccCCCccccccccccCCCCcEEEeecc-cccccCCchhhhccccccEEEeccC
Q 036258          207 LLDLGNNY-LTTRSSTTEWSFLSSLTNCIYLKVLGLHSN-QLSGILPPLIGNFSDSLQQFYAYDC  269 (331)
Q Consensus       207 ~L~l~~~~-l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n-~~~~~~~~~~~~~~~~L~~L~l~~~  269 (331)
                      +|++++|. ++.       +.+..+..+++|++|+++++ .+++.....+...+ +|+.|++.+|
T Consensus       179 ~L~L~~~~~itd-------~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~-~L~~L~l~~~  235 (284)
T d2astb2         179 HLDLSDSVMLKN-------DCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIP-TLKTLQVFGI  235 (284)
T ss_dssp             EEECTTCTTCCG-------GGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCT-TCCEEECTTS
T ss_pred             ccccccccCCCc-------hhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCC-CCCEEeeeCC
Confidence            66666553 332       23344555666666666663 45444444455544 6666666665

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=9.2e-18  Score=149.45  Aligned_cols=68  Identities=22%  Similarity=0.258  Sum_probs=48.1

Q ss_pred             hhcCCCCccEEEcCCCcCccC----CChhhhcCCCCCcEEEccCCccccc----CCccCcCCCCCCEEEccCcccc
Q 036258           50 CFYNISSLKMIRLSSNSLSGS----LPNDLCNRLPSLEQLVLRSNGFFGQ----IPLSLSKCTQLQHLWLEHNKFT  117 (331)
Q Consensus        50 ~~~~~~~L~~L~l~~~~i~~~----~~~~~~~~~~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~l~~n~~~  117 (331)
                      .+..+++|++|++++|.+++.    +...+.....+|++|++++|.++..    ++..+..+++|++|++++|.+.
T Consensus        50 ~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          50 ALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             HHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             HHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence            367888999999999988621    2222212345799999999887632    3456778889999999988764

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.56  E-value=9.8e-17  Score=137.78  Aligned_cols=89  Identities=21%  Similarity=0.178  Sum_probs=49.3

Q ss_pred             hcCCCCccEEEcCCCcCccCCChh---hhcCCCCCcEEEccCCccccc----------CCccCcCCCCCCEEEccCcccc
Q 036258           51 FYNISSLKMIRLSSNSLSGSLPND---LCNRLPSLEQLVLRSNGFFGQ----------IPLSLSKCTQLQHLWLEHNKFT  117 (331)
Q Consensus        51 ~~~~~~L~~L~l~~~~i~~~~~~~---~~~~~~~L~~L~L~~n~i~~~----------~~~~~~~l~~L~~L~l~~n~~~  117 (331)
                      +.+...|++|++++|.+...-...   .+...+.|+.++++++.....          +...+..+++|++|++++|.+.
T Consensus        27 L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  106 (344)
T d2ca6a1          27 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG  106 (344)
T ss_dssp             HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred             HhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccc
Confidence            455677888888887765321111   224567788888776543211          1122345667777777777665


Q ss_pred             cc----CCccccCcccccccccCccc
Q 036258          118 GR----LPENIGNLSKLRSLVLGHKA  139 (331)
Q Consensus       118 ~~----~~~~~~~l~~L~~L~l~~~~  139 (331)
                      ..    +...+...++|++|++++|.
T Consensus       107 ~~~~~~l~~~l~~~~~L~~L~l~~n~  132 (344)
T d2ca6a1         107 PTAQEPLIDFLSKHTPLEHLYLHNNG  132 (344)
T ss_dssp             TTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred             cccccchhhhhcccccchheeccccc
Confidence            32    22233345666666665443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=7e-15  Score=111.53  Aligned_cols=125  Identities=18%  Similarity=0.138  Sum_probs=66.8

Q ss_pred             CCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhh
Q 036258          177 NASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGN  256 (331)
Q Consensus       177 ~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~  256 (331)
                      +..++++|++++|++... +..+..+++|++|++++|.+..+         +.+..+++|++|++++|.+....+..+..
T Consensus        16 n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~l---------~~~~~l~~L~~L~ls~N~i~~l~~~~~~~   85 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL---------DGFPLLRRLKTLLVNNNRICRIGEGLDQA   85 (162)
T ss_dssp             CTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE---------CCCCCCSSCCEEECCSSCCCEECSCHHHH
T ss_pred             CcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCcc---------CCcccCcchhhhhcccccccCCCcccccc
Confidence            334445555555554432 23333444555555555555432         12444555555555555555333333333


Q ss_pred             ccccccEEEeccCcccccC-CccccCCCCCCEEEccCCCCcccCCc----CccCCCCCCeEe
Q 036258          257 FSDSLQQFYAYDCELKGSI-PQEIGNLNGLIDLRLQDNDLNGTIPT----TVGRLQQLQGLF  313 (331)
Q Consensus       257 ~~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~----~l~~l~~L~~L~  313 (331)
                      ++ .+++|++++|.+.... ...+..+++|++|++++|+++ ..+.    .+..+|+|+.||
T Consensus        86 l~-~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          86 LP-DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CT-TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEET
T ss_pred             cc-ccccceeccccccccccccccccccccchhhcCCCccc-cccchHHHHHHHCCCcCeeC
Confidence            33 6666666666655211 135667778888888888876 4443    456677888776

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.55  E-value=1.2e-16  Score=137.13  Aligned_cols=247  Identities=22%  Similarity=0.227  Sum_probs=170.6

Q ss_pred             CCChhhhcCCCCCcEEEccCCcccc----cCCccCcCCCCCCEEEccCccccc---c-------CCccccCccccccccc
Q 036258           70 SLPNDLCNRLPSLEQLVLRSNGFFG----QIPLSLSKCTQLQHLWLEHNKFTG---R-------LPENIGNLSKLRSLVL  135 (331)
Q Consensus        70 ~~~~~~~~~~~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~l~~n~~~~---~-------~~~~~~~l~~L~~L~l  135 (331)
                      .+...+ .....++.|+|++|.+..    .+...+...++|+.++++++....   .       +...+...++|++|++
T Consensus        22 ~l~~~L-~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L  100 (344)
T d2ca6a1          22 SVFAVL-LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL  100 (344)
T ss_dssp             TTSHHH-HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred             HHHHHH-hhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccc
Confidence            344444 668999999999998742    233456788999999999875431   1       2234566789999999


Q ss_pred             CccccccccccCCcchhcCCCCCcEEEcCCCCCCC-----Ccc---------cccCCCCCceeeCcCcccccc----Cch
Q 036258          136 GHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRT-----IPN---------SITNASELTLLELGKNSFSGL----VPN  197 (331)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-----~~~---------~~~~l~~L~~L~l~~n~~~~~----~~~  197 (331)
                      ++|.................++|++|++++|.+..     +..         .....+.|+.+.+++|.+...    +..
T Consensus       101 ~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~  180 (344)
T d2ca6a1         101 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK  180 (344)
T ss_dssp             CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred             cccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccc
Confidence            87765543322222233367899999999998751     111         123457899999999887643    233


Q ss_pred             hccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccccCC----chhhhccccccEEEeccCcccc
Q 036258          198 TFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILP----PLIGNFSDSLQQFYAYDCELKG  273 (331)
Q Consensus       198 ~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~  273 (331)
                      .+...+.|+.|++++|.+...+...  .+...+..+++|++|++++|.+.....    ..+...+ .|++|++++|.+.+
T Consensus       181 ~l~~~~~L~~L~L~~n~i~~~g~~~--~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~-~L~~L~Ls~n~i~~  257 (344)
T d2ca6a1         181 TFQSHRLLHTVKMVQNGIRPEGIEH--LLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP-NLRELGLNDCLLSA  257 (344)
T ss_dssp             HHHHCTTCCEEECCSSCCCHHHHHH--HHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCT-TCCEEECTTCCCCH
T ss_pred             hhhhhhhhccccccccccccccccc--chhhhhcchhhhcccccccccccccccccccccccccc-cchhhhhhcCccCc
Confidence            4566789999999999887421100  134457789999999999999864432    3334444 89999999999986


Q ss_pred             cCCc----ccc--CCCCCCEEEccCCCCccc----CCcCcc-CCCCCCeEeccCCeee
Q 036258          274 SIPQ----EIG--NLNGLIDLRLQDNDLNGT----IPTTVG-RLQQLQGLFLFGNNLQ  320 (331)
Q Consensus       274 ~~~~----~l~--~l~~L~~L~l~~n~l~~~----~~~~l~-~l~~L~~L~l~~n~~~  320 (331)
                      ....    ++.  ..+.|++|++++|.+...    +...+. +.++|+.|++++|.+.
T Consensus       258 ~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         258 RGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             hhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            4333    333  346799999999998752    233332 5788999999999986

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=3.3e-17  Score=145.81  Aligned_cols=270  Identities=20%  Similarity=0.231  Sum_probs=149.9

Q ss_pred             hcCCCCccEEEcCCCcCcc----CCChhhhcCCCCCcEEEccCCcccc----cCCccCc-CCCCCCEEEccCcccccc--
Q 036258           51 FYNISSLKMIRLSSNSLSG----SLPNDLCNRLPSLEQLVLRSNGFFG----QIPLSLS-KCTQLQHLWLEHNKFTGR--  119 (331)
Q Consensus        51 ~~~~~~L~~L~l~~~~i~~----~~~~~~~~~~~~L~~L~L~~n~i~~----~~~~~~~-~l~~L~~L~l~~n~~~~~--  119 (331)
                      ++.++++++|+|++|+++.    .+.. .+..+++|++|+|++|.+..    .+...+. ...+|++|++++|.++..  
T Consensus        23 ~~~l~~l~~L~L~~~~i~~~~~~~l~~-~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~  101 (460)
T d1z7xw1          23 LPLLQQCQVVRLDDCGLTEARCKDISS-ALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC  101 (460)
T ss_dssp             HHHHTTCSEEEEESSCCCHHHHHHHHH-HHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGH
T ss_pred             HHhCCCCCEEEeCCCCCCHHHHHHHHH-HHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCcccccc
Confidence            5677899999999998873    2222 23678999999999998752    1222333 335799999999988743  


Q ss_pred             --CCccccCcccccccccCcccccccccc----------------------CC-------cchhcCCCCCcEEEcCCCCC
Q 036258          120 --LPENIGNLSKLRSLVLGHKAHNSLHGH----------------------LP-------STLSVSLPNLKWLALGMNKL  168 (331)
Q Consensus       120 --~~~~~~~l~~L~~L~l~~~~~~~~~~~----------------------~~-------~~~~~~l~~L~~L~l~~~~l  168 (331)
                        ++..+..+++|++|++++|.+......                      ..       .........++.+.++++..
T Consensus       102 ~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~  181 (460)
T d1z7xw1         102 GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI  181 (460)
T ss_dssp             HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred             ccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccccccccccccccccccccccc
Confidence              345677889999999987654321100                      00       00011334566665554432


Q ss_pred             C-----------------------------C-----CcccccCCCCCceeeCcCccccc-----cCchhccCCCCCCEEE
Q 036258          169 R-----------------------------T-----IPNSITNASELTLLELGKNSFSG-----LVPNTFGNLRFLSLLD  209 (331)
Q Consensus       169 ~-----------------------------~-----~~~~~~~l~~L~~L~l~~n~~~~-----~~~~~l~~~~~L~~L~  209 (331)
                      .                             .     ....+...+.++.+.+.++.+..     ...........++.++
T Consensus       182 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~  261 (460)
T d1z7xw1         182 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLW  261 (460)
T ss_dssp             HHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred             ccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccccchhhcccccccccccccc
Confidence            1                             0     00111223445555555554321     1112233345666777


Q ss_pred             ccCCcccCccCCC-----------c--------------cccccc-cccCCCCcEEEeecccccccCCchhhhc---ccc
Q 036258          210 LGNNYLTTRSSTT-----------E--------------WSFLSS-LTNCIYLKVLGLHSNQLSGILPPLIGNF---SDS  260 (331)
Q Consensus       210 l~~~~l~~~~~~~-----------~--------------~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~---~~~  260 (331)
                      +++|.+.......           .              ..+... ......|+.++++++.+.......+..+   .++
T Consensus       262 l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~  341 (460)
T d1z7xw1         262 IWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRF  341 (460)
T ss_dssp             CTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSS
T ss_pred             cccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcccccccccc
Confidence            7666554211000           0              000000 1123456666666666554433333221   136


Q ss_pred             ccEEEeccCccccc----CCcccc-CCCCCCEEEccCCCCccc----CCcCccCCCCCCeEeccCCeeee
Q 036258          261 LQQFYAYDCELKGS----IPQEIG-NLNGLIDLRLQDNDLNGT----IPTTVGRLQQLQGLFLFGNNLQG  321 (331)
Q Consensus       261 L~~L~l~~~~~~~~----~~~~l~-~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~  321 (331)
                      |++|+|++|.+.+.    ++..+. ..+.|++|++++|.++..    +++.+..+++|++|++++|+++.
T Consensus       342 L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~  411 (460)
T d1z7xw1         342 LLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  411 (460)
T ss_dssp             CCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             hhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCH
Confidence            88888888877643    233332 356688888888887642    33445566788888888888764

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=8.8e-15  Score=110.96  Aligned_cols=127  Identities=17%  Similarity=0.183  Sum_probs=79.4

Q ss_pred             hcCCCCccEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccc
Q 036258           51 FYNISSLKMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKL  130 (331)
Q Consensus        51 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L  130 (331)
                      |.+..++++|++++|+|+ .++. ++..+++|+.|++++|.+...  +.|..+++|++|++++|.++...+..+..+++|
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~-~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   89 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             ccCcCcCcEEECCCCCCC-ccCc-cccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCcccccccccc
Confidence            566678888888888887 6764 446788888888888888743  347788888888888888774333333344555


Q ss_pred             cccccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCc--ccccCCCCCceeeCcCccccccC---chhccCCCCC
Q 036258          131 RSLVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIP--NSITNASELTLLELGKNSFSGLV---PNTFGNLRFL  205 (331)
Q Consensus       131 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~--~~~~~l~~L~~L~l~~n~~~~~~---~~~l~~~~~L  205 (331)
                      ++|++                            .+|.+..++  ..+..+++|+++++++|.+....   +..+..+++|
T Consensus        90 ~~L~L----------------------------~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L  141 (162)
T d1a9na_          90 TELIL----------------------------TNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQV  141 (162)
T ss_dssp             CEEEC----------------------------CSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTC
T ss_pred             cccee----------------------------ccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCc
Confidence            55555                            444444333  23455555666666665554322   1234555666


Q ss_pred             CEEE
Q 036258          206 SLLD  209 (331)
Q Consensus       206 ~~L~  209 (331)
                      ++|+
T Consensus       142 ~~LD  145 (162)
T d1a9na_         142 RVLD  145 (162)
T ss_dssp             SEET
T ss_pred             CeeC
Confidence            6655

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.47  E-value=2.1e-13  Score=98.28  Aligned_cols=102  Identities=26%  Similarity=0.328  Sum_probs=54.4

Q ss_pred             ceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhccccc
Q 036258          182 TLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFSDSL  261 (331)
Q Consensus       182 ~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L  261 (331)
                      +.|++++|.+... + .+..+++|++|++++|.++.        ++..+..+++|++|++++|.+.+ ++ .+..++ +|
T Consensus         1 R~L~Ls~n~l~~l-~-~l~~l~~L~~L~ls~N~l~~--------lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~-~L   67 (124)
T d1dcea3           1 RVLHLAHKDLTVL-C-HLEQLLLVTHLDLSHNRLRA--------LPPALAALRCLEVLQASDNALEN-VD-GVANLP-RL   67 (124)
T ss_dssp             SEEECTTSCCSSC-C-CGGGGTTCCEEECCSSCCCC--------CCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCS-SC
T ss_pred             CEEEcCCCCCCCC-c-ccccCCCCCEEECCCCccCc--------chhhhhhhhcccccccccccccc-cC-cccccc-cc
Confidence            3456666666533 2 25556666666666666653        23335556666666666666652 22 244443 55


Q ss_pred             cEEEeccCcccccC-CccccCCCCCCEEEccCCCCc
Q 036258          262 QQFYAYDCELKGSI-PQEIGNLNGLIDLRLQDNDLN  296 (331)
Q Consensus       262 ~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~n~l~  296 (331)
                      ++|++++|++.+.. ...+..+++|+.|++++|+++
T Consensus        68 ~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          68 QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            66666655555221 234555555555666555554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.46  E-value=2.4e-13  Score=97.99  Aligned_cols=56  Identities=21%  Similarity=0.296  Sum_probs=32.3

Q ss_pred             cEEEcCCCcCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCcccc
Q 036258           58 KMIRLSSNSLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFT  117 (331)
Q Consensus        58 ~~L~l~~~~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~  117 (331)
                      |+|++++|.++ .++.  ++.+++|++|++++|.+. .+|..++.+++|++|++++|.++
T Consensus         1 R~L~Ls~n~l~-~l~~--l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~   56 (124)
T d1dcea3           1 RVLHLAHKDLT-VLCH--LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE   56 (124)
T ss_dssp             SEEECTTSCCS-SCCC--GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred             CEEEcCCCCCC-CCcc--cccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc
Confidence            45666666665 4442  255666666666666655 34445556666666666666554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.35  E-value=2.8e-14  Score=111.97  Aligned_cols=143  Identities=20%  Similarity=0.238  Sum_probs=101.3

Q ss_pred             CcEEEcCCC--CCCCCcccccCCCCCceeeCcCccccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCC
Q 036258          158 LKWLALGMN--KLRTIPNSITNASELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIY  235 (331)
Q Consensus       158 L~~L~l~~~--~l~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~  235 (331)
                      ++.+++.+.  .+..++..+..+++|++|++++|.+... + .+..+++|++|++++|.++.+        +.....+++
T Consensus        25 ~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~~i--------~~~~~~~~~   94 (198)
T d1m9la_          25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIKKI--------ENLDAVADT   94 (198)
T ss_dssp             CSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEECSC--------SSHHHHHHH
T ss_pred             cceeeeecccCchhhhhhHHhcccccceeECcccCCCCc-c-cccCCccccChhhcccccccc--------ccccccccc
Confidence            444444333  3445667788888889999988888754 3 477788899999988888754        222344567


Q ss_pred             CcEEEeecccccccCCchhhhccccccEEEeccCcccccC-CccccCCCCCCEEEccCCCCcccCCcC----------cc
Q 036258          236 LKVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELKGSI-PQEIGNLNGLIDLRLQDNDLNGTIPTT----------VG  304 (331)
Q Consensus       236 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~----------l~  304 (331)
                      |++|++++|.+++.  ..+..++ +|+.|++++|++.... ...+..+++|+.|++++|++....+..          +.
T Consensus        95 L~~L~l~~N~i~~l--~~~~~l~-~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~  171 (198)
T d1m9la_          95 LEELWISYNQIASL--SGIEKLV-NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK  171 (198)
T ss_dssp             CCEEECSEEECCCH--HHHHHHH-HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHH
T ss_pred             cccccccccccccc--ccccccc-cccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHH
Confidence            88999999888743  3355555 8999999999887421 146788999999999999887533332          45


Q ss_pred             CCCCCCeEe
Q 036258          305 RLQQLQGLF  313 (331)
Q Consensus       305 ~l~~L~~L~  313 (331)
                      .+|+|+.||
T Consensus       172 ~lp~L~~LD  180 (198)
T d1m9la_         172 RLPNLKKLD  180 (198)
T ss_dssp             HCSSCCEES
T ss_pred             HCCCcCEeC
Confidence            688898876

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.28  E-value=3.9e-14  Score=111.09  Aligned_cols=126  Identities=22%  Similarity=0.258  Sum_probs=71.5

Q ss_pred             CCccEEEcCCC--cCccCCChhhhcCCCCCcEEEccCCcccccCCccCcCCCCCCEEEccCccccccCCccccCcccccc
Q 036258           55 SSLKMIRLSSN--SLSGSLPNDLCNRLPSLEQLVLRSNGFFGQIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRS  132 (331)
Q Consensus        55 ~~L~~L~l~~~--~i~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  132 (331)
                      ..++.+++++.  .+. .++..+ ..+++|++|++++|.|.. ++ .+..+++|++|++++|.++ .++.....+++|++
T Consensus        23 ~~~~~~~l~~~~~~i~-~l~~sl-~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~   97 (198)
T d1m9la_          23 TEAEKVELHGMIPPIE-KMDATL-STLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEE   97 (198)
T ss_dssp             TTCSCEECCBCCTTCC-CCHHHH-HHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCE
T ss_pred             cccceeeeecccCchh-hhhhHH-hcccccceeECcccCCCC-cc-cccCCccccChhhcccccc-cccccccccccccc
Confidence            34556666554  243 455554 678889999998888874 33 5778888888888888876 34443333445666


Q ss_pred             cccCccccccccccCCcchhcCCCCCcEEEcCCCCCCCCc--ccccCCCCCceeeCcCccc
Q 036258          133 LVLGHKAHNSLHGHLPSTLSVSLPNLKWLALGMNKLRTIP--NSITNASELTLLELGKNSF  191 (331)
Q Consensus       133 L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~--~~~~~l~~L~~L~l~~n~~  191 (331)
                      |++++|....+.     .+ ..+++|++|++++|.++.++  ..+..+++|+.|++++|.+
T Consensus        98 L~l~~N~i~~l~-----~~-~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_          98 LWISYNQIASLS-----GI-EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             EECSEEECCCHH-----HH-HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHH
T ss_pred             cccccccccccc-----cc-cccccccccccccchhccccccccccCCCccceeecCCCcc
Confidence            666554443221     11 13444555555555444333  2344444444444444443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=2.6e-11  Score=90.79  Aligned_cols=107  Identities=18%  Similarity=0.081  Sum_probs=70.9

Q ss_pred             CCceeeCcCccccccCchhccCCCCCCEEEccCC-cccCccCCCccccccccccCCCCcEEEeecccccccCCchhhhcc
Q 036258          180 ELTLLELGKNSFSGLVPNTFGNLRFLSLLDLGNN-YLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLSGILPPLIGNFS  258 (331)
Q Consensus       180 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~-~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~  258 (331)
                      ....++..++.+.. .|..+..+++|++|+++++ .++.++       +.+|.++++|+.|++++|++....+.+|..++
T Consensus         9 ~~~~l~c~~~~~~~-~p~~l~~l~~l~~L~l~~n~~l~~i~-------~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~   80 (156)
T d2ifga3           9 GSSGLRCTRDGALD-SLHHLPGAENLTELYIENQQHLQHLE-------LRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP   80 (156)
T ss_dssp             SSSCEECCSSCCCT-TTTTSCSCSCCSEEECCSCSSCCEEC-------GGGSCSCCCCSEEECCSSCCCEECTTGGGSCS
T ss_pred             CCCeEEecCCCCcc-CcccccCccccCeeecCCCccccccC-------chhhccccccCcceeeccccCCcccccccccc
Confidence            34556666666553 3555677778888888665 466532       23477788888888888888766666666665


Q ss_pred             ccccEEEeccCcccccCCccccCCCCCCEEEccCCCCc
Q 036258          259 DSLQQFYAYDCELKGSIPQEIGNLNGLIDLRLQDNDLN  296 (331)
Q Consensus       259 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~  296 (331)
                       +|++|+|++|+++ .+|.......+|+.|++++|++.
T Consensus        81 -~L~~L~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          81 -RLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             -CCCEEECCSSCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             -cccceeccCCCCc-ccChhhhccccccccccCCCccc
Confidence             7888888888877 44443333446778888888774

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=1.7e-11  Score=91.91  Aligned_cols=106  Identities=19%  Similarity=0.037  Sum_probs=61.7

Q ss_pred             CcEEEcCCCCCCCCcccccCCCCCceeeCcCc-cccccCchhccCCCCCCEEEccCCcccCccCCCccccccccccCCCC
Q 036258          158 LKWLALGMNKLRTIPNSITNASELTLLELGKN-SFSGLVPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYL  236 (331)
Q Consensus       158 L~~L~l~~~~l~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L  236 (331)
                      .++++..++++..+|..+..+++|++|++.++ .+..+.+..|.++++|+.|++++|+++.++       +.+|..+++|
T Consensus        10 ~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~-------~~~f~~l~~L   82 (156)
T d2ifga3          10 SSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA-------PDAFHFTPRL   82 (156)
T ss_dssp             SSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC-------TTGGGSCSCC
T ss_pred             CCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcc-------cccccccccc
Confidence            34455555555555555666666666666544 355555556666666666666666666542       2336666666


Q ss_pred             cEEEeecccccccCCchhhhccccccEEEeccCccc
Q 036258          237 KVLGLHSNQLSGILPPLIGNFSDSLQQFYAYDCELK  272 (331)
Q Consensus       237 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~  272 (331)
                      ++|+|++|.+. .+|....... .+++|+|++|.+.
T Consensus        83 ~~L~Ls~N~l~-~l~~~~~~~~-~l~~L~L~~Np~~  116 (156)
T d2ifga3          83 SRLNLSFNALE-SLSWKTVQGL-SLQELVLSGNPLH  116 (156)
T ss_dssp             CEEECCSSCCS-CCCSTTTCSC-CCCEEECCSSCCC
T ss_pred             cceeccCCCCc-ccChhhhccc-cccccccCCCccc
Confidence            66666666666 3333333333 5666666666653

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=2.2e-08  Score=75.00  Aligned_cols=46  Identities=30%  Similarity=0.278  Sum_probs=26.2

Q ss_pred             hhccCCCCCCEEEccCCcccCccCCCccccccccccCCCCcEEEeeccccc
Q 036258          197 NTFGNLRFLSLLDLGNNYLTTRSSTTEWSFLSSLTNCIYLKVLGLHSNQLS  247 (331)
Q Consensus       197 ~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~  247 (331)
                      ..+..++.|++|++++|.++.+.     .+...+..+++|+.|++++|.+.
T Consensus        59 ~~~~~~~~L~~L~Ls~N~i~~l~-----~~~~~~~~l~~L~~L~Ls~N~i~  104 (162)
T d1koha1          59 IIEENIPELLSLNLSNNRLYRLD-----DMSSIVQKAPNLKILNLSGNELK  104 (162)
T ss_dssp             HHHHHCTTCCCCCCCSSCCCCCS-----GGGTHHHHSTTCCCCCCTTSCCC
T ss_pred             HHHHhCCCCCEeeCCCccccCCc-----hhHHHHhhCCcccccccccCccc
Confidence            33445667777777777766532     12233445566666666666655

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=9.2e-08  Score=71.50  Aligned_cols=89  Identities=20%  Similarity=0.179  Sum_probs=57.8

Q ss_pred             hhhcCCCCCcEEEccCCcccccC--CccCcCCCCCCEEEccCccccccCCccccCcccccccccCcccccccccc---CC
Q 036258           74 DLCNRLPSLEQLVLRSNGFFGQI--PLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGH---LP  148 (331)
Q Consensus        74 ~~~~~~~~L~~L~L~~n~i~~~~--~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~~  148 (331)
                      .++..+++|++|++++|+++...  +..+..+++|++|++++|.++...+-.+....+|+.+++.+|........   .-
T Consensus        59 ~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~  138 (162)
T d1koha1          59 IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYI  138 (162)
T ss_dssp             HHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHH
T ss_pred             HHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHH
Confidence            34456888888888888887432  23456788888888888888743332334455788888877766533211   11


Q ss_pred             cchhcCCCCCcEEE
Q 036258          149 STLSVSLPNLKWLA  162 (331)
Q Consensus       149 ~~~~~~l~~L~~L~  162 (331)
                      ..++..+|+|+.||
T Consensus       139 ~~i~~~~P~L~~LD  152 (162)
T d1koha1         139 SAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHTTSTTCCEET
T ss_pred             HHHHHHCCCCCEEC
Confidence            23455788888876

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.94  E-value=9.3e-07  Score=66.19  Aligned_cols=89  Identities=10%  Similarity=0.111  Sum_probs=39.1

Q ss_pred             CCCcEEEcCCCCCC-----CCcccccCCCCCceeeCcCcccccc----CchhccCCCCCCEEEccCCcccCccCCCcccc
Q 036258          156 PNLKWLALGMNKLR-----TIPNSITNASELTLLELGKNSFSGL----VPNTFGNLRFLSLLDLGNNYLTTRSSTTEWSF  226 (331)
Q Consensus       156 ~~L~~L~l~~~~l~-----~~~~~~~~l~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~  226 (331)
                      +.|++|++++|.+.     .+...+...+.|++|++++|.+...    +...+...+.|++|++++|.+..++......+
T Consensus        44 ~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l  123 (167)
T d1pgva_          44 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDM  123 (167)
T ss_dssp             SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHH
T ss_pred             CccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHH
Confidence            34444444444443     1223344445555555555555421    12234444555666665554433221111123


Q ss_pred             ccccccCCCCcEEEeecc
Q 036258          227 LSSLTNCIYLKVLGLHSN  244 (331)
Q Consensus       227 ~~~~~~~~~L~~L~l~~n  244 (331)
                      ...+...+.|++|+++.+
T Consensus       124 ~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_         124 MMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHHHHCSSCCEEECCCC
T ss_pred             HHHHHhCCCccEeeCcCC
Confidence            334444555555555443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.85  E-value=2.8e-06  Score=63.45  Aligned_cols=113  Identities=11%  Similarity=0.080  Sum_probs=57.7

Q ss_pred             cCCCCCcEEEccCC-cccc----cCCccCcCCCCCCEEEccCccccccCCccccCcccccccccCccccccccccCCcch
Q 036258           77 NRLPSLEQLVLRSN-GFFG----QIPLSLSKCTQLQHLWLEHNKFTGRLPENIGNLSKLRSLVLGHKAHNSLHGHLPSTL  151 (331)
Q Consensus        77 ~~~~~L~~L~L~~n-~i~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~  151 (331)
                      ...+.|+.|+|+++ .+..    .+..++...+.|++|++++|.+.......++                        .+
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la------------------------~~   67 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLI------------------------EL   67 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHH------------------------HH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHh------------------------hh
Confidence            45677888888764 3431    1223455667777777777766522111111                        11


Q ss_pred             hcCCCCCcEEEcCCCCCC-----CCcccccCCCCCceeeCcCcccccc-------CchhccCCCCCCEEEccCC
Q 036258          152 SVSLPNLKWLALGMNKLR-----TIPNSITNASELTLLELGKNSFSGL-------VPNTFGNLRFLSLLDLGNN  213 (331)
Q Consensus       152 ~~~l~~L~~L~l~~~~l~-----~~~~~~~~l~~L~~L~l~~n~~~~~-------~~~~l~~~~~L~~L~l~~~  213 (331)
                      ....+.|++|++++|.+.     .+..++...+.|++|++++|.+...       +...+...+.|+.|+++.+
T Consensus        68 L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          68 IETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             hhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            112344555555555444     1223445555666666665543321       2234444566777776554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.53  E-value=1.9e-06  Score=64.40  Aligned_cols=60  Identities=18%  Similarity=0.237  Sum_probs=31.8

Q ss_pred             cccEEEeccCccccc----CCccccCCCCCCEEEc--cCCCCcc----cCCcCccCCCCCCeEeccCCee
Q 036258          260 SLQQFYAYDCELKGS----IPQEIGNLNGLIDLRL--QDNDLNG----TIPTTVGRLQQLQGLFLFGNNL  319 (331)
Q Consensus       260 ~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l--~~n~l~~----~~~~~l~~l~~L~~L~l~~n~~  319 (331)
                      .++.+++.+|.+...    +...+...++|+.+++  ++|.+..    .+.+.+...++|+.|+++.+..
T Consensus        75 ~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          75 TLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             SCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             cchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            455555555544421    2334555666666544  3455543    2333445667777777766543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.35  E-value=2.4e-05  Score=58.13  Aligned_cols=41  Identities=17%  Similarity=0.148  Sum_probs=17.8

Q ss_pred             cCCCCCcEEEccC-Ccccc----cCCccCcCCCCCCEEEccCcccc
Q 036258           77 NRLPSLEQLVLRS-NGFFG----QIPLSLSKCTQLQHLWLEHNKFT  117 (331)
Q Consensus        77 ~~~~~L~~L~L~~-n~i~~----~~~~~~~~l~~L~~L~l~~n~~~  117 (331)
                      ...+.|++|++++ +.+..    .+..++...++|++|++++|.++
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~   59 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN   59 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCccc
Confidence            3445555555554 22321    11122334455555555555443