Citrus Sinensis ID: 036269

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620---
Protein Sequence
MHDVVRYVAQQIASKNKFLIKAGVELKDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSDMSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLLKLEWLMIVDNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEIERVNIAKEETELFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFCDELRQVFPANLGKKAAAEEMVLYRNRRDQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSRCPTLQEIIMNDEGEVGLQGASTEKITFPSLFSIQLCLLDSLTCFCSSGSHATVEFLALEALQIIDCPGMKTF
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHccEEEEEcccccccccccccccccEEEEEEcccccccccccccccccEEEccccccccccHHHHcccccccEEEccccccccccccccHHHccccccEEEccccccccccccccccccccEEEccccccccccHHHcccccccEEccccccccccccHHHHHccccccEEEccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccEEEEcccccccccHHHHHHHHHHHcccccccccccccccccccHHHHHHccccccEEEccccccccccccccccccccccEEEEEcccccEEEccccccccccccccccEEEEcccccccccccccccccccccccEEEEEcccccccccccccccccccccEEEEEccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccEEEEccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccEEEEEcccccccccccccccccccccEEEEEccccccHHccccccccccccccccccccccccEEEcccccccccccccccccccccccccEEEcccccccEEc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHccccEEEEccccccccccHHHHccEEEEEEccccHHHccccccccccEEEEEcccccccccHHHHHHccccEEEEcccccccccccccccHHHHHcccEEEccccccccccHHHHHHHccEEEEcccccHHHccHHHHHHHcccEEEccccccccEccHHHHHHHHcccEEEEcccccEEEEcccccccccccHHHHHHHccccEEEEEEccccccccccccccccEEEEEEEEccccccccccccccHHHHHHHHHHHEccccccccccHHHHHHHHHHccEEEEcccccccEcccccccccccccEEEEEEccccHHHccccccccHHHHcccccEEEEcccHcHHHHHcccccccccccccEEEEcccHHHHHHccccHHcccccccEEEEcccccHHEEEcccccccccccccccccccEEEEcccccccEEcccccccccccccEEEEEcccHHHHHcccHHHHHHHHHccEEEEccccccEEEEccccccccccccccccEEEEcccHcHHHcccHHHHHHHHcccEEEEcccHHHHHHEcccccHHcccccccccEEcccccEEEEcccccccEccccccccccccccccEEEEEcccccccc
Coil and Loop (DISEMBL)
MHDVVRYVAQQIASKNKFLIKAGvelkdwpsintfedltgislmFNDIHevheglqcprlQALFlqkndlldipdpffqgmkdlkvldlggsgvfslfslpssLSFLINLRtlslhdcqhfgdlsligeLSLLEIldlsesdvseipvsfgrlghlrlldltdcynleliprGVLSRLRKLEELYMSKTFChwqfeneddsrsnaKFIELGALSRLtslhidipegeimpsdmsfqnltsfsitiggpeevplsDFIEVFSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEILalgdvndlENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLLKLEWLMIVDNRNfveichgqlpagclsnvkrldvrdcgsvlkilpSHLVQSFQNLQRLRVEGCELLVSVFEIERVNIAKEETELFSSLEKLtliglprmtdiwkgdtqfvsLHDLKKIRVVFCDELRQVFPANLGKKAAAEEMVLYRNRRDQihihattstssptpslgnlvsITIRGCGKLRNLFTTSMVKSLVRleslevsrcptlqeiimndegevglqgastekitfpsLFSIQLCLLDsltcfcssgshaTVEFLALEALqiidcpgmktf
Flexible Loop (DISEMBL)
MHDVVRYVAQQIASKNKFLIKAGVELKDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSDMSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSRamglsqdmRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLLKLEWLMIVDNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEIERVNIAKEETELFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFCDELRQvfpanlgkkaaAEEMVLYRNRRDQIHIhattstssptpslgNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSRCPTLQEIIMNDEGEVGLQGASTEKITFPSLFSIQLCLLDSLTCFCSSGSHATVEFLALEALQIIDCPGMKTF
Low Complexity Region (SEG)
MHDVVRYVAQQIASKNKFLIKAGVELKDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVldlggsgvfslfslpsslsflINLRTLSLHDCQHFgdlsligelslleildlsesdVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSDMSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLLKLEWLMIVDNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEIERVNIAKEETELFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFCDELRQVFPANLGKKAAAEEMVLYRNRRDQIHIHAttstssptpsLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSRCPTLQEIIMNDEGEVGLQGASTEKITFPSLFSIQLCLLDSLTCFCSSGSHATVEFLALEALQIIDCPGMKTF
Disordered region (IsUnstruct)
***VVRYVAQQIASKNKFLIKAGVELKDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENE*****NAKFIELGALSRLTSLHIDIPEGEIMPSDMSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLLKLEWLMIVDNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEIERVNIAKEETELFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFCDELRQVFPANLGKKAAAEEMVLYRNRRDQIHIHA**********LGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSRCPTLQEIIMNDEGEVGLQGASTEKITFPSLFSIQLCLLDSLTCFCSSGSHATVEFLALEALQIIDCP*****
Disordered Region (DISOPRED)
MHDVVRYVAQQIASKNKFLIKAGVELKDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHW**************IELGALSRLTSLHIDIPEGEIMPSDMSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLLKLEWLMIVDNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSV***************FSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFCDELRQVFPANLGKKAAAEEMVLYRNRRDQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSRCPTLQEIIMN*************KITFPSLFSIQLCLLDSLTCFCSSGSHATVEFLALEALQIIDCPGMKTF
Disordered Region (DISEMBL)
MHDVVRYVAQQIASKNKFLIKAGVELKDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSDMSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLLKLEWLMIVDNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEIERVNIAKEETELFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFCDELRQVFPANLGKKAAAEEMVLYRNRRDQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSRCPTLQEIIMNDEGEVGLQGASTEKITFPSLFSIQLCLLDSLTCFCSSGSHATVEFLALEALQIIDCPGMKTF
Disordered Region (DISPRO)
*HDVVRYVAQQIASKNKFLIKAGVELKDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSDMSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLLKLEWLMIVDNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEIERVNIAKEETELFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFCDELRQVFPANLGKKAAAEEMVLYRNRRDQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSRCPTLQEIIMNDEGE*GLQGASTEKITFPSLFSIQLCLLDSLTCFCSSGSHATVEFLALEALQIIDCPGMK**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHDVVRYVAQQIASKNKFLIKAGVELKDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSDMSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLLKLEWLMIVDNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEIERVNIAKEETELFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFCDELRQVFPANLGKKAAAEEMVLYRNRRDQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSRCPTLQEIIMNDEGEVGLQGASTEKITFPSLFSIQLCLLDSLTCFCSSGSHATVEFLALEALQIIDCPGMKTF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	623	2.2.26 [Sep-21-2011]
Q9T048	985	Disease resistance protei	yes	no	0.492	0.311	0.300	8e-19
Q42484	909	Disease resistance protei	no	no	0.601	0.412	0.269	3e-18
O81825	919	Probable disease resistan	no	no	0.346	0.235	0.314	1e-16
O64973	889	Disease resistance protei	no	no	0.253	0.177	0.368	5e-15
Q940K0	889	Probable disease resistan	no	no	0.219	0.154	0.341	2e-14
P60838	894	Probable disease resistan	no	no	0.218	0.152	0.359	1e-13
P60839	884	Probable disease resistan	no	no	0.181	0.127	0.404	3e-13
Q8RXS5	888	Probable disease resistan	no	no	0.181	0.127	0.383	4e-11
O23317	719	Probable disease resistan	no	no	0.223	0.193	0.340	4e-11
O64789	925	Probable disease resistan	no	no	0.219	0.148	0.317	5e-11

>sp|Q9T048|DRL27_ARATH Disease resistance protein At4g27190 OS=Arabidopsis thaliana GN=At4g27190 PE=2 SV=1

 Score = 95.9 bits (237), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 101/336 (30%), Positives = 154/336 (45%), Gaps = 29/336 (8%)

Query: 1   MHDVVRYVAQQIASKNK----FLIKAGVELKDWPSINTFEDLTGISLMFNDIHEVHEGLQ 56
           MHDVVR  A  I S ++     L+ +G  L+D         L  +SLM N +  + + ++
Sbjct: 462 MHDVVRDFAIWIMSSSQDDSHSLVMSGTGLQDIRQDKLAPSLRRVSLMNNKLESLPDLVE 521

Query: 57  --CPRLQALFLQKNDLL-DIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTL 113
             C +   L LQ N LL ++P  F Q    L++L+L G+ + S  S   SL  L +L +L
Sbjct: 522 EFCVKTSVLLLQGNFLLKEVPIGFLQAFPTLRILNLSGTRIKSFPS--CSLLRLFSLHSL 579

Query: 114 SLHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRG 173
            L DC     L  +  L+ LE+LDL  + + E P     L   R LDL+   +LE IP  
Sbjct: 580 FLRDCFKLVKLPSLETLAKLELLDLCGTHILEFPRGLEELKRFRHLDLSRTLHLESIPAR 639

Query: 174 VLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIM--PS 231
           V+SRL  LE L M+ +   W  + E   +  A   E+G L RL  L I +     +    
Sbjct: 640 VVSRLSSLETLDMTSSHYRWSVQGE-TQKGQATVEEIGCLQRLQVLSIRLHSSPFLLNKR 698

Query: 232 DMSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSRAMGLSQDMRISALPSWIKNLL 291
           +   + L  F + +G       S +I + +R  K+R + +      + +S +   I  LL
Sbjct: 699 NTWIKRLKKFQLVVG-------SRYI-LRTRHDKRRLTIS-----HLNVSQVS--IGWLL 743

Query: 292 LRSEILALGDVNDLENIVSDLAHD--GFNELMFLAI 325
             +  LAL     +E ++  L  D  GF  L  L I
Sbjct: 744 AYTTSLALNHCQGIEAMMKKLVSDNKGFKNLKSLTI 779

Disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q42484|RPS2_ARATH Disease resistance protein RPS2 OS=Arabidopsis thaliana GN=RPS2 PE=1 SV=1

 Score = 94.0 bits (232), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 115/426 (26%), Positives = 183/426 (42%), Gaps = 51/426 (11%)

Query: 1   MHDVVRYVAQQIAS-----KNKFLIKAGVELKDWPSINTFEDLTGISLMFNDIHEVHEGL 55
           MH+VVR  A  +AS     K   L++  +   + P    +     ISL+ N I  + E L
Sbjct: 471 MHNVVRSFALWMASEQGTYKELILVEPSMGHTEAPKAENWRQALVISLLDNRIQTLPEKL 530

Query: 56  QCPRLQALFLQKND-LLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLS 114
            CP+L  L LQ+N  L  IP  FF  M  L+VLDL  +   S+  +P S+ +L+ L  LS
Sbjct: 531 ICPKLTTLMLQQNSSLKKIPTGFFMHMPVLRVLDLSFT---SITEIPLSIKYLVELYHLS 587

Query: 115 LHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGV 174
           +                       S + +S +P   G L  L+ LDL     L+ IPR  
Sbjct: 588 M-----------------------SGTKISVLPQELGNLRKLKHLDLQRTQFLQTIPRDA 624

Query: 175 LSRLRKLEELYMSKTFCHWQFEN-EDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSDM 233
           +  L KLE L +  ++  W+ ++  +D      F +L  L  LT+L I +   E + +  
Sbjct: 625 ICWLSKLEVLNLYYSYAGWELQSFGEDEAEELGFADLEYLENLTTLGITVLSLETLKTLF 684

Query: 234 SFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSRAMGLS--QDMRISALPSWIKNLL 291
            F  L    I     EE     +  + S     R  R + +    D+     P+  +N  
Sbjct: 685 EFGALHK-HIQHLHVEECNELLYFNLPSLTNHGRNLRRLSIKSCHDLEYLVTPADFENDW 743

Query: 292 LRS-EILALGDVNDLENIVSD-LAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLLKL 349
           L S E+L L  +++L  +  + ++ D    +  + I  CN++K +      +    L KL
Sbjct: 744 LPSLEVLTLHSLHNLTRVWGNSVSQDCLRNIRCINISHCNKLKNV------SWVQKLPKL 797

Query: 350 EWLMIVDNRNFVE-ICHGQLPA----GCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQR 404
           E + + D R   E I   + P+        ++K L  RD   +  ILPS    SFQ ++ 
Sbjct: 798 EVIELFDCREIEELISEHESPSVEDPTLFPSLKTLRTRDLPELNSILPSRF--SFQKVET 855

Query: 405 LRVEGC 410
           L +  C
Sbjct: 856 LVITNC 861

Disease resistance (R) protein that specifically recognizes the AvrRpt2 type III effector avirulence protein from Pseudomonas syringae. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Acts via its interaction with RIN4, and probably triggers the plant resistance when RIN4 is degraded by AvrRpt2.

Arabidopsis thaliana (taxid: 3702)

>sp|O81825|DRL28_ARATH Probable disease resistance protein At4g27220 OS=Arabidopsis thaliana GN=At4g27220 PE=2 SV=1

 Score = 89.0 bits (219), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 113/232 (48%), Gaps = 16/232 (6%)

Query: 1   MHDVVRYVAQQIASKN----KFLIKAGVELKDWPSINTFEDLTGISLMFNDI----HEVH 52
           MHDVVR  A    S        L+ AG  L ++P       +  +SLM N +    + V 
Sbjct: 431 MHDVVRDFAIWFMSSQGEGFHSLVMAGRGLIEFPQDKFVSSVQRVSLMANKLERLPNNVI 490

Query: 53  EGLQCPRLQALFLQKND-LLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLR 111
           EG++      L LQ N  + ++P+ F Q   +L++LDL G     + +LP S S L +LR
Sbjct: 491 EGVET---LVLLLQGNSHVKEVPNGFLQAFPNLRILDLSG---VRIRTLPDSFSNLHSLR 544

Query: 112 TLSLHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIP 171
           +L L +C+   +L  +  L  L+ LDL ES + E+P     L  LR + +++ Y L+ IP
Sbjct: 545 SLVLRNCKKLRNLPSLESLVKLQFLDLHESAIRELPRGLEALSSLRYICVSNTYQLQSIP 604

Query: 172 RGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDI 223
            G + +L  LE L M+ +   W  + E +    A   E+  L  L  L I +
Sbjct: 605 AGTILQLSSLEVLDMAGSAYSWGIKGE-EREGQATLDEVTCLPHLQFLAIKL 655

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O64973|RPS5_ARATH Disease resistance protein RPS5 OS=Arabidopsis thaliana GN=RPS5 PE=1 SV=2

 Score = 83.6 bits (205), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 63/171 (36%), Positives = 94/171 (54%), Gaps = 13/171 (7%)

Query: 1   MHDVVRYVAQQIAS-----KNKFLIKAGVELKDWPSINTFEDLTGISLMFNDIHEVHEGL 55
           MHDVVR +A  I+S     K K +++AGV L++ P +  +  +  ISLM N+I E+ +  
Sbjct: 477 MHDVVREMALWISSDLGKQKEKCIVRAGVGLREVPKVKDWNTVRKISLMNNEIEEIFDSH 536

Query: 56  QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSL 115
           +C  L  LFLQKND++ I   FF+ M  L VLDL  +   SL  LP  +S L +LR  +L
Sbjct: 537 ECAALTTLFLQKNDVVKISAEFFRCMPHLVVLDLSENQ--SLNELPEEISELASLRYFNL 594

Query: 116 -HDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFG--RLGHLRLLDLTD 163
            + C H      +G  +L +++ L+   +S +    G   L +LR L L D
Sbjct: 595 SYTCIH---QLPVGLWTLKKLIHLNLEHMSSLGSILGISNLWNLRTLGLRD 642

Disease resistance (R) protein that specifically recognizes the avrPphB type III effector avirulence protein from Pseudomonas syringae. Also confers resistance against Hyaloperonospora parasitica (downy mildew). Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Requires PBS1 to trigger the defense reaction against avrPphB. Probably triggers the defense mechanism when PBS1 is cleaved by avrPphB, suggesting that it detects indirectly the protease activity of avrPphB, and possibly binds to the cleaved RPS5.

Arabidopsis thaliana (taxid: 3702)

>sp|Q940K0|DRL15_ARATH Probable disease resistance protein At1g61180 OS=Arabidopsis thaliana GN=At1g61180 PE=2 SV=2

 Score = 81.3 bits (199), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 82/167 (49%), Gaps = 30/167 (17%)

Query: 1   MHDVVRYVAQQIAS-----KNKFLIKAGVELKDWPSINTFEDLTGISLMFNDIHEVHEGL 55
           MHDVVR +A  IAS     K  F+++AGV L + P +  +  +  +SLM NDI E+    
Sbjct: 471 MHDVVREMALWIASDFGKQKENFVVQAGVGLHEIPKVKDWGAVRKMSLMDNDIEEITCES 530

Query: 56  QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSL 115
           +C  L  LFLQ N L ++P  F + M+ L VLDL  +  F+   LP  +S L++      
Sbjct: 531 KCSELTTLFLQSNKLKNLPGAFIRYMQKLVVLDLSYNRDFN--KLPEQISGLVS------ 582

Query: 116 HDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLT 162
                            L+ LDLS + +  +P+    L  L  LDLT
Sbjct: 583 -----------------LQFLDLSNTSIEHMPIGLKELKKLTFLDLT 612

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P60838|DRL1_ARATH Probable disease resistance protein At1g12280 OS=Arabidopsis thaliana GN=At1g12280 PE=3 SV=1

 Score = 79.0 bits (193), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/167 (35%), Positives = 84/167 (50%), Gaps = 31/167 (18%)

Query: 1   MHDVVRYVAQQIAS-----KNKFLIKAGVELKDWPSINTFEDLTGISLMFNDIHEVHEGL 55
           MHDVVR +A  IAS     K + +++ GV L++ P +  +  +  +SLM N+I  +    
Sbjct: 476 MHDVVREMALWIASDLGEHKERCIVQVGVGLREVPKVKNWSSVRRMSLMENEIEILSGSP 535

Query: 56  QCPRLQALFLQKND-LLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLS 114
           +C  L  LFLQKND LL I D FF+ +  L VLDL G+   SL  LP+ +S L++LR   
Sbjct: 536 ECLELTTLFLQKNDSLLHISDEFFRCIPMLVVLDLSGNS--SLRKLPNQISKLVSLR--- 590

Query: 115 LHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDL 161
                                LDLS + +  +PV    L  LR L L
Sbjct: 591 --------------------YLDLSWTYIKRLPVGLQELKKLRYLRL 617

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P60839|DRL2_ARATH Probable disease resistance protein At1g12290 OS=Arabidopsis thaliana GN=At1g12290 PE=2 SV=1

 Score = 77.8 bits (190), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/121 (40%), Positives = 72/121 (59%), Gaps = 8/121 (6%)

Query: 1   MHDVVRYVAQQIAS-----KNKFLIKAGVELKDWPSINTFEDLTGISLMFNDIHEVHEGL 55
           MHDVVR +A  IAS     K+  +++AG  L + P +  ++ ++ +SL+ N I E+H   
Sbjct: 478 MHDVVREMALWIASDLRKHKDNCIVRAGFRLNEIPKVKDWKVVSRMSLVNNRIKEIHGSP 537

Query: 56  QCPRLQALFLQKN-DLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLS 114
           +CP+L  LFLQ N  L++I   FF+ M  L VLDL  S   +L  LP  +S L++LR L 
Sbjct: 538 ECPKLTTLFLQDNRHLVNISGEFFRSMPRLVVLDL--SWNVNLSGLPDQISELVSLRYLD 595

Query: 115 L 115
           L
Sbjct: 596 L 596

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RXS5|DRL40_ARATH Probable disease resistance protein At5g63020 OS=Arabidopsis thaliana GN=At5g63020 PE=2 SV=2

 Score = 70.5 bits (171), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/120 (38%), Positives = 70/120 (58%), Gaps = 7/120 (5%)

Query: 1   MHDVVRYVAQQIAS-----KNKFLIKAGVELKDWPSINTFEDLTGISLMFNDIHEVHEGL 55
           MHDVVR +A  IAS     K  F+++AG++ ++ P I  ++    +SLMFN+I  + +  
Sbjct: 471 MHDVVREMALWIASDFGKQKENFIVQAGLQSRNIPEIEKWKVARRVSLMFNNIESIRDAP 530

Query: 56  QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSL 115
           + P+L  L L+KN L  I   FF+ M  L VLDL  +    L  LP+ +S  ++L+ LSL
Sbjct: 531 ESPQLITLLLRKNFLGHISSSFFRLMPMLVVLDLSMNR--DLRHLPNEISECVSLQYLSL 588

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O23317|DRL24_ARATH Probable disease resistance protein At4g14610 OS=Arabidopsis thaliana GN=At4g14610 PE=3 SV=1

 Score = 70.5 bits (171), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/147 (34%), Positives = 80/147 (54%), Gaps = 8/147 (5%)

Query: 1   MHDVVRYVAQQIAS-----KNKFLIKAGVELKDWPSINTFEDLTGISLMFNDIHEVHEGL 55
           MHDVVR +A  I+S     K++ +++AGV L   P +  +  +  +SLM N++ ++    
Sbjct: 359 MHDVVREMALWISSDLGKHKDQCIVRAGVGLHAVPEVKNWRAVRRMSLMKNELEKILGCP 418

Query: 56  QCPRLQALFLQKN-DLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLS 114
            CP+L  L LQKN  L++I   FF+ M +L VLDL  +   SL  LP  +S +    T  
Sbjct: 419 TCPQLTTLLLQKNHKLVNISGEFFRFMPNLVVLDLSWNS--SLTGLPKKISEVETTNTSE 476

Query: 115 LHDCQHFGDLSLIGELSLLEILDLSES 141
               + FG+ + + +L  L+ L L +S
Sbjct: 477 FGVHEEFGEYAGVSKLLSLKTLRLQKS 503

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O64789|DRL18_ARATH Probable disease resistance protein At1g61310 OS=Arabidopsis thaliana GN=At1g61310 PE=2 SV=1

 Score = 70.1 bits (170), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 79/167 (47%), Gaps = 30/167 (17%)

Query: 1   MHDVVRYVAQQIAS-----KNKFLIKAGVELKDWPSINTFEDLTGISLMFNDIHEVHEGL 55
           MHDVVR +A  IAS     K  F+++A   L + P +  +  +  +SLM N+I E+    
Sbjct: 484 MHDVVREMALWIASDFGKQKENFVVQASAGLHEIPEVKDWGAVRRMSLMRNEIEEITCES 543

Query: 56  QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSL 115
           +C  L  LFLQ N L ++   F + M+ L VLDL  +  F+   LP  +S L++      
Sbjct: 544 KCSELTTLFLQSNQLKNLSGEFIRYMQKLVVLDLSDNRDFN--ELPEQISGLVS------ 595

Query: 116 HDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLT 162
                            L+ LDLS + + ++PV    L  L  LDL 
Sbjct: 596 -----------------LQYLDLSFTRIEQLPVGLKELKKLTFLDLA 625

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	623
224111296	1315	cc-nbs-lrr resistance protein [Populus t	0.948	0.449	0.328	4e-77
359494129	1144	PREDICTED: disease resistance protein At	0.977	0.532	0.342	3e-76
224111284	1340	cc-nbs-lrr resistance protein [Populus t	0.948	0.441	0.338	2e-72
224143316	1337	cc-nbs-lrr resistance protein [Populus t	0.945	0.440	0.336	7e-71
297735461	1063	unnamed protein product [Vitis vinifera]	0.873	0.511	0.342	1e-70
147832986	975	hypothetical protein VITISV_010740 [Viti	0.873	0.557	0.340	6e-70
225445915	1063	PREDICTED: disease resistance protein At	0.871	0.510	0.345	1e-69
255542484	2460	phosphoprotein phosphatase, putative [Ri	0.950	0.240	0.323	4e-67
297735460	1042	unnamed protein product [Vitis vinifera]	0.834	0.499	0.331	1e-64
359488103	1530	PREDICTED: disease resistance protein At	0.902	0.367	0.316	1e-64

>gi|224111296|ref|XP_002332952.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834264|gb|EEE72741.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  295 bits (755), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 212/645 (32%), Positives = 336/645 (52%), Gaps = 54/645 (8%)

Query: 1    MHDVVRYVAQQIASKNKFLIKAGVELKDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRL 60
            MHDVV   A  +A ++  ++    E K+WP+ +  +  T ISL F  I ++   L+CP L
Sbjct: 460  MHDVVHSFAISVALRDHHVLTVADEFKEWPANDVLQQYTAISLPFRKIPDLPAILECPNL 519

Query: 61   QA-LFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQ 119
             + L L K+  L IPD FF+ MK+LK+LDL      +L  LPSSL FL NL+TL L  C 
Sbjct: 520  NSFLLLNKDPSLQIPDSFFREMKELKILDLTE---VNLSPLPSSLQFLENLQTLCLDHCV 576

Query: 120  HFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLR 179
               D+S+IGEL+ L++L L  S++  +P   G++  L+LLDL++C  LE+I    LS L 
Sbjct: 577  -LEDISIIGELNKLKVLSLMSSNIVRLPREIGKVTRLQLLDLSNCERLEVISPNALSSLT 635

Query: 180  KLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSDM--SFQN 237
            +LE+LYM  +F  W+ E     R+NA   EL  LS L++LH+ I + + MP D+  SFQN
Sbjct: 636  RLEDLYMGNSFVKWETEGSSSQRNNACLSELKHLSNLSTLHMQITDADNMPKDLFSSFQN 695

Query: 238  LTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEIL 297
            L  F I IG   +  + D     SR  K + +  + L +          +  LL  +E L
Sbjct: 696  LERFRIFIGDGWDWSVKD---ATSRTLKLKLNTVIQLEEG---------VNTLLKITEEL 743

Query: 298  ALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLLKLEWLMIVDN 357
             L ++N +++I++DL  +GF +L  L +  C  ++Y++NS+    R   L L+ L + + 
Sbjct: 744  HLQELNGVKSILNDLDGEGFPQLRHLHVQNCPGVQYIINSIRMGPRTAFLNLDSLFLENL 803

Query: 358  RNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVF 417
             N  +ICHGQL A  L N++ L V  C  +  +    + +    L+ + +  C+++  V 
Sbjct: 804  DNLEKICHGQLMAESLGNLRILKVESCHRLKNLFSVSMARRLVRLEEITIIDCKIMEEVV 863

Query: 418  EIERVNIAKEETEL--FSSLEKLTLIGLPRMTDIWKGDTQFVSLH-------DLKKIRVV 468
              E  N A +   +  F+ L +LTL  LP          QF S H       D ++ + +
Sbjct: 864  AEESENDAADGEPIIEFTQLRRLTLQCLP----------QFTSFHSNVEESSDSQRRQKL 913

Query: 469  FCDELR--QVFPAN-LGKKAAA-EEMVLYRNRRD------QIHIHATTSTSSPTPSLGNL 518
               E R  ++   N LG   +     +L+ N  D      ++        S  +P + NL
Sbjct: 914  LASEARSKEIVAGNELGTSMSLFNTKILFPNLEDLKLSSIKVEKIWHDQPSVQSPCVKNL 973

Query: 519  VSITIRGCGKLRNLFTTSMVKSLVRLESLEVSRCPTLQEIIMNDEGEVGLQGASTEKITF 578
             SI +  C  L  L T+SMV+SL +L+ LE+  C +++EI++ +  ++G +G    K+ F
Sbjct: 974  ASIAVENCRNLNYLLTSSMVESLAQLKKLEICNCKSMEEIVVPE--DIG-EGKMMSKMLF 1030

Query: 579  PSLFSIQLCLLDSLTCFCSSGSHATVEFLALEALQIIDCPGMKTF 623
            P L  + L  L  LT FC+S     +E  +L+ L + +CP +K F
Sbjct: 1031 PKLLILSLIRLPKLTRFCTSN---LLECHSLKVLTVGNCPELKEF 1072

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494129|ref|XP_002278428.2| PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera]

 Score =  292 bits (748), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 220/643 (34%), Positives = 333/643 (51%), Gaps = 34/643 (5%)

Query: 1    MHDVVRYVAQQIASKNK--FLIKAGVELKDWPSINTFEDLTGISLMFNDIHEVHEGLQCP 58
            MHD+VR  A  I S  K  F++KAGV LK+WP   TFE    ISLM N+I  +  GL+CP
Sbjct: 467  MHDLVRVFAISITSTEKYAFMVKAGVGLKNWPKKGTFEHYALISLMANNISSLPVGLECP 526

Query: 59   RLQALFLQKNDLLDI-PDPFFQGMKDLKVLDLGG-SGVFSLFSL-----PSSLSFLINLR 111
            +L  L L  N  L I PD FF GMK LKVLDL   S     +SL     P+SL  L +LR
Sbjct: 527  KLHTLLLGGNRGLKIFPDAFFVGMKTLKVLDLTAISKKLYRYSLHITPLPASLQLLTDLR 586

Query: 112  TLSLHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIP 171
             L LH  +  GD+S++G+L  LEIL    S +SE+P   G L +L+LLDLT C +L+ IP
Sbjct: 587  MLHLHH-RKLGDISILGKLKKLEILSFFASHISELPKEMGELKNLKLLDLTYCRSLKKIP 645

Query: 172  RGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPS 231
              ++S L  LEELYM  +F  W        RS+A   EL +L  LT+LH++I   + +P+
Sbjct: 646  PNLISGLSALEELYMRGSFQQWDVGGTTIERSSASLSELNSLLNLTTLHVEIINAKCIPN 705

Query: 232  DMSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSRAMGLSQDMRISALPSWIKNLL 291
               F N   F I IG      LS     F+RK K     +  L      S +P  +K L 
Sbjct: 706  SFLFPNQLRFQIYIGS----KLS--FATFTRKLKYDYPTSKALELKGIDSPIPIGVKMLF 759

Query: 292  LRSEILALGDVNDLE---NIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLLK 348
             R+E L+L  ++ LE   NI+ +L   GFN L  L++  C E + ++++ +    V    
Sbjct: 760  ERTEDLSL--ISLLEGSRNILPNLGSRGFNGLTSLSVRNCVEFECIIDTTQGVHPVAFPN 817

Query: 349  LEWLMIVDNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVE 408
            +E + +        +  G LP G    ++ L V  CG +  + P+ L+Q  QNL+ +++ 
Sbjct: 818  IETIHLTHLCGMKVLSSGTLPMGSFRKLRVLTVEQCGGLSTLFPADLLQLLQNLEIVQIT 877

Query: 409  GCELLVSVFEIERVNIAKEETELFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVV 468
             C+ +  VF+IE + + +E     SSL +L L  LP++  +WKG    +SLH+L+ I + 
Sbjct: 878  CCQEMQDVFQIEGILVGEEHVLPLSSLRELKLDTLPQLEHLWKGFGAHLSLHNLEVIEIE 937

Query: 469  FCDELRQVFPANLGKKAAAEEMVLYRN--------RRDQIHIHATTSTSSPTPSLGNLVS 520
             C+ LR +F  ++ +     E +   +          D +    +      + +L  L  
Sbjct: 938  RCNRLRNLFQPSIAQSLFKLEYLKIVDCMELQQIIAEDGLEQEVSNVEDKKSLNLPKLKV 997

Query: 521  ITIRGCGKLRNLFTTSMVKSLVRLESLEVSRCPTLQEIIMNDEGEVGLQGASTEKITFPS 580
            + +  C KL++LF+ S  +S ++L+ L+VS    L+ II  + GE+    A+ +K   P 
Sbjct: 998  LEVEDCKKLKSLFSVSSAQSFLQLKQLKVSGSNELKAIISCECGEI---SAAVDKFVLPQ 1054

Query: 581  LFSIQLCLLDSLTCFCSSGSHATVEFLALEALQIIDCPGMKTF 623
            L +++L  L  L  FC    +   E+ +LE + +  CP M TF
Sbjct: 1055 LSNLELKALPVLESFCK--GNFPFEWPSLEEVVVDTCPRMTTF 1095

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111284|ref|XP_002332949.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834261|gb|EEE72738.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  280 bits (715), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 215/636 (33%), Positives = 332/636 (52%), Gaps = 45/636 (7%)

Query: 1    MHDVVRYVAQQIASKNKFLIKAGVELKDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRL 60
            MHDVV+  A  +AS++  ++    E K+WP+ +  +  T ISL +  I ++   L+CP L
Sbjct: 460  MHDVVQSFAFSVASRDHHVLIVADEFKEWPTSDVLQQYTAISLPYRKIPDLPAILECPNL 519

Query: 61   QA-LFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQ 119
             + + L K+  L IPD FF+ MK+LKVLDL      +L  LPSSL FL NL+TL L  C 
Sbjct: 520  NSFILLNKDPSLQIPDNFFREMKELKVLDLTR---VNLSPLPSSLQFLENLQTLCLDGCV 576

Query: 120  HFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLR 179
               D+S++GEL  L++L L  SD+  +P   G+L  L LLDL++C  LE+I   VLS L 
Sbjct: 577  -LEDISIVGELKKLKVLSLISSDIVCLPREIGKLTRLLLLDLSNCERLEVISPNVLSSLT 635

Query: 180  KLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSDMS--FQN 237
            +LEELYM  +F  W+ E     R+NA   EL  LS L +LH+ I + + M  D+S  FQ 
Sbjct: 636  RLEELYMGNSFVKWETEGSSSQRNNACLSELKRLSNLITLHMQITDADNMLKDLSFLFQK 695

Query: 238  LTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEIL 297
            L  F I IG           + +    K   SR + L  +  I  L  W+  LL  +E L
Sbjct: 696  LERFRIFIG-----------DGWDWSVKYATSRTLKLKLNTVIQ-LEEWVNTLLKSTEEL 743

Query: 298  ALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLLKLEWLMIVDN 357
             L ++  +++I++DL  + F  L  L +  C  ++Y++NS+    R   L L+ L + + 
Sbjct: 744  HLQELKGVKSILNDLDGEDFPRLKHLHVQNCPGVQYIINSIRMGPRTAFLNLDSLFLENL 803

Query: 358  RNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVF 417
             N  +ICHGQL A  L  ++ L V  C  +  +    + +    L+ + +  C+++  V 
Sbjct: 804  DNLEKICHGQLMAESLGKLRILKVESCHRLKNLFSVSMARRLVRLEEITIIDCKIMEEVV 863

Query: 418  EIERVN-IAKEETELFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFCDEL--- 473
              E  N  A  E   F+ L +LTL  LP+ T       Q +   D++   +V  +EL   
Sbjct: 864  AEESENDTADGEPIEFAQLRRLTLQCLPQFTSFHSNRRQKLLASDVRSKEIVAGNELGTS 923

Query: 474  ------RQVFPANLGKKAAAEEMVLYRNRRDQIHIHATTSTSSPTPSLGNLVSITIRGCG 527
                  + +FP NL      E++ L   + ++I  H   +   P   + NL S+ +  C 
Sbjct: 924  MSLFNTKILFP-NL------EDLKLSSIKVEKIW-HDQPAVQPPC--VKNLASMVVESCS 973

Query: 528  KLRNLFTTSMVKSLVRLESLEVSRCPTLQEIIMNDEGEVGLQGASTEKITFPSLFSIQLC 587
             L  L T+SMV+SL +LE LE+  C +++EI++  EG +G +G    K+ FP L  ++L 
Sbjct: 974  NLNYLLTSSMVESLAQLERLEICNCESMEEIVV-PEG-IG-EGKMMSKMLFPKLHLLELS 1030

Query: 588  LLDSLTCFCSSGSHATVEFLALEALQIIDCPGMKTF 623
             L  LT FC+S     +E  +L+ L + +CP +K F
Sbjct: 1031 GLPKLTRFCTSN---LLECHSLKVLMVGNCPELKEF 1063

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143316|ref|XP_002336027.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222838884|gb|EEE77235.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  275 bits (702), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 215/638 (33%), Positives = 330/638 (51%), Gaps = 49/638 (7%)

Query: 1    MHDVVRYVAQQIASKNKFLIKAGVELKDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRL 60
            MHDVVR  A  +A ++  ++    E K+WP+ +  +  T ISL F  I ++   L+CP L
Sbjct: 460  MHDVVRSFAISVALRDHHVLIVADEFKEWPTNDVLQQYTAISLPFRKIPDLPAILECPNL 519

Query: 61   QALFLQKNDL-LDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQ 119
             +  L   D  L IP+ FF+ MK+LKVLDL G    +L  LPSSL FL NL+TL L  C 
Sbjct: 520  NSFLLLSTDPSLQIPENFFREMKELKVLDLTG---VNLSPLPSSLQFLENLQTLCLDFCV 576

Query: 120  HFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLR 179
               D+S++GEL  L++L L  SD+  +P   G+L  L LLDL++C  LE+I   VLS L 
Sbjct: 577  -LEDISIVGELKKLKVLSLMGSDIVCLPREIGKLTRLLLLDLSNCERLEVISPNVLSSLT 635

Query: 180  KLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSD--MSFQN 237
            +LEELYM  +F  W+ E     R++A   EL  L+ L +L + I + + MP D  + FQ 
Sbjct: 636  RLEELYMGNSFLKWEAEGPSSERNSACLSELKLLANLITLDMQITDADHMPKDLFLCFQK 695

Query: 238  LTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEIL 297
            L  F I IG           + +    K   SR + L  +  I  L   +  LL  +E L
Sbjct: 696  LERFRIFIG-----------DGWDWSVKYATSRTLKLKLNTVIQ-LEERVNTLLKITEEL 743

Query: 298  ALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLLKLEWLMIVDN 357
             L ++N +++I++DL  +GF +L  L +  C  ++Y++NS+    R   L L+ L + + 
Sbjct: 744  HLQELNGVKSILNDLDEEGFCQLKDLHVQNCPGVQYIINSMRMGPRTAFLNLDSLFLENL 803

Query: 358  RNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVF 417
             N  +ICHGQL A  L N++ L V  C  +  +    + +    L+ + +  C+++  V 
Sbjct: 804  DNLEKICHGQLMAESLGNLRILKVESCHRLKNLFSVSIARRVVRLEEITIIDCKIMEEVV 863

Query: 418  EIERVN-IAKEETELFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFCDEL--- 473
              E  N  A  E   F+ L +LTL  LP+ T       Q +   D++   +V  +EL   
Sbjct: 864  AEESENDTADGEPIEFTQLRRLTLQCLPQFTSFHSNRRQKLLASDVRSKEIVAGNELGTS 923

Query: 474  ------RQVFPANLGKKAAAEEMVLYRNRRDQI--HIHATTSTSSPTPSLGNLVSITIRG 525
                  + +FP         E+++L   + ++I    HA        P + NL SI +  
Sbjct: 924  MSLFNTKILFP-------KLEDLMLSSIKVEKIWHDQHAVQP-----PCVKNLASIVVES 971

Query: 526  CGKLRNLFTTSMVKSLVRLESLEVSRCPTLQEIIMNDEGEVGLQGASTEKITFPSLFSIQ 585
            C  L  L T+SMV+SL +L+SLE+  C +++EI++  EG +G +G    K+ FP L  + 
Sbjct: 972  CSNLNYLLTSSMVESLAQLKSLEICNCKSMEEIVV-PEG-IG-EGKMMSKMLFPKLHILS 1028

Query: 586  LCLLDSLTCFCSSGSHATVEFLALEALQIIDCPGMKTF 623
            L  L  LT FC+S     +E  +L+ L +  CP +K F
Sbjct: 1029 LIRLPKLTRFCTSN---LLECHSLKVLTLGKCPELKEF 1063

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735461|emb|CBI17901.3| unnamed protein product [Vitis vinifera]

 Score =  274 bits (701), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 194/567 (34%), Positives = 296/567 (52%), Gaps = 23/567 (4%)

Query: 1    MHDVVRYVAQQIAS---KNKFLIKAGVELKDWPSINTFEDLTGISLMFNDIHEVHEGLQC 57
            MHDVVR +A  + S    N F++++G  LK WP+ +++E  T ISLM N+I E+ +GL C
Sbjct: 471  MHDVVRDMAILLVSSEDNNAFMVQSGSALKVWPTKDSYEAYTAISLMSNEIEELPDGLVC 530

Query: 58   PRLQALFLQKN-DLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLH 116
            P+LQ L LQ N D+ +IPD FF     L+VLDL G+ + SL   P SL  L +LRTL L 
Sbjct: 531  PKLQTLLLQNNNDIQEIPDDFFGSFHSLRVLDLNGADIPSL---PPSLGLLRSLRTLCLD 587

Query: 117  DCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLS 176
             CQ   D+S++G+L  LEIL L ES + ++P    +L +LR+LD T   N++ IP  V+S
Sbjct: 588  CCQSITDISILGKLEKLEILSLRESYIEDLPEELAQLANLRMLDFTMSNNIKSIPPKVIS 647

Query: 177  RLRKLEELYMSKTFCHWQFENEDDSR-SNAKFIELGALSRLTSLHIDIPEGEIMPSDMSF 235
             L +LEE+YM  +F  W    E  S  +NA F EL  L RL  L +DI + E MP  + F
Sbjct: 648  SLSRLEEMYMQGSFADWGLLLEGTSSGANAGFDELTCLHRLNILKVDISDAECMPKTVRF 707

Query: 236  Q-NLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSRAMGLSQDMRISALPSWIKNLLL-R 293
              N  +F I I        + F+ V   +     SRA+ L  D+ I+ LP W   +   R
Sbjct: 708  DPNWVNFDICIS---RKLFTRFMNVHLSRVTAARSRALIL--DVTINTLPDWFNKVATER 762

Query: 294  SEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLL-KLEWL 352
            +E L   +   L+NI+ +      N L  L +  C+++ +L++++       L   LE L
Sbjct: 763  TEKLYYIECRGLDNILMEYDQGSLNGLKILLVQSCHQIVHLMDAVTYVPNRPLFPSLEEL 822

Query: 353  MIVDNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLK-ILPSHLVQSFQNLQRLRVEGCE 411
             + +     EIC GQLP G L N+K L V  C  ++  +LP++L++  ++L+ L V G  
Sbjct: 823  RVHNLDYLKEICIGQLPPGSLGNMKFLQVEQCNELVNGLLPANLLRRLESLEVLDVSG-S 881

Query: 412  LLVSVFEIERVNIAKEETELFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFCD 471
             L  +F  E +   +E   +   L +L L  LP + +IW G TQ    H+LK + V+ C 
Sbjct: 882  YLEDIFRTEGL---REGEVVVGKLRELKLDNLPELKNIWNGPTQLAIFHNLKILTVIKCK 938

Query: 472  ELRQVFPANLGK--KAAAEEMVLYRNRRDQIHIHATTSTSSPTPSLGNLVSITIRGCGKL 529
            +LR +F  ++ +  +   E  + Y N  + +                NL +++++    L
Sbjct: 939  KLRNLFTYSVAQSLRYLEELWIEYCNGLEGVIGMHEGGDVVERIIFQNLKNLSLQNLPVL 998

Query: 530  RNLFTTSMVKSLVRLESLEVSRCPTLQ 556
            R+ +          LE L V  CPT +
Sbjct: 999  RSFYEGDARIECPSLEQLHVQGCPTFR 1025

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147832986|emb|CAN77367.1| hypothetical protein VITISV_010740 [Vitis vinifera]

 Score =  271 bits (694), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 193/567 (34%), Positives = 296/567 (52%), Gaps = 23/567 (4%)

Query: 1   MHDVVRYVAQQIASK---NKFLIKAGVELKDWPSINTFEDLTGISLMFNDIHEVHEGLQC 57
           MHDVVR +A  +AS    N F++++G  LK+WP+ +++E  T ISLM N+I E+ +GL C
Sbjct: 380 MHDVVRDMAILLASSEEDNAFMVQSGSALKEWPTKDSYEAYTAISLMSNEIEELPDGLVC 439

Query: 58  PRLQALFLQKN-DLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLH 116
           P+LQ L LQ N D+ +IPD FF     L+VLDL G+ + SL   P SL  L +LRTL L 
Sbjct: 440 PKLQTLLLQNNNDIQEIPDDFFGSFHSLRVLDLNGADIPSL---PPSLGLLRSLRTLCLD 496

Query: 117 DCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLS 176
            CQ   D+S++G+L  LEIL L ES + ++P    +L +LR+LD T   N++ IP  V+S
Sbjct: 497 CCQSITDISILGKLEKLEILSLRESYIEDLPEELAQLANLRMLDFTMSNNIKSIPPKVIS 556

Query: 177 RLRKLEELYMSKTFCHWQFENEDDSR-SNAKFIELGALSRLTSLHIDIPEGEIMPSDMSF 235
            L +LEE+YM  +F  W    E  S  +NA F EL  L RL  L +DI + E MP  + F
Sbjct: 557 SLSRLEEMYMQGSFADWGLLLEGTSSGANAGFDELTCLHRLNILKVDISDAECMPKTVRF 616

Query: 236 Q-NLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSRAMGLSQDMRISALPSWIKNLLL-R 293
             N  +F I I        + F+ V   +     SR++ L  D+ I+ LP W   +   R
Sbjct: 617 DPNWVNFDICIN---RKLFNRFMNVHLSRVTAARSRSLIL--DVTINTLPDWFNKVATER 671

Query: 294 SEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLL-KLEWL 352
           +E L       L+NI+ +      N L  L +  C+++ +L++++       L   LE L
Sbjct: 672 TEKLYYIXCRGLDNILMEYDQGSLNGLKILLVQXCHQIVHLMDAVTYVPNRPLFPSLEEL 731

Query: 353 MIVDNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLK-ILPSHLVQSFQNLQRLRVEGCE 411
            + +     EIC GQLP G L N+K L V  C  ++  + P++L++  ++L+ L V G  
Sbjct: 732 RVHNLDYLKEICIGQLPPGSLGNMKFLQVEQCNELVNGLXPANLLRRLESLEVLDVSG-S 790

Query: 412 LLVSVFEIERVNIAKEETELFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFCD 471
            L  +F  E +   +E   +   L +L L  LP + +IW G TQ    H+LK + V+ C 
Sbjct: 791 YLEDIFRTEGL---REGEVVVGKLRELKLDNLPELKNIWXGPTQLAIFHNLKILTVIKCX 847

Query: 472 ELRQVFPANLGK--KAAAEEMVLYRNRRDQIHIHATTSTSSPTPSLGNLVSITIRGCGKL 529
           +LR +F  ++ +  +   E  + Y N  + +                NL +++++    L
Sbjct: 848 KLRXLFTYSVAQSLRYLEELWIEYCNGLEGVIGXHEGGDVVERIIFQNLKNLSLQNLPVL 907

Query: 530 RNLFTTSMVKSLVRLESLEVSRCPTLQ 556
           R+ +          LE L V  CPT +
Sbjct: 908 RSFYEGDARIECPSLEQLHVQGCPTFR 934

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445915|ref|XP_002263288.1| PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera]

 Score =  271 bits (692), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 196/568 (34%), Positives = 298/568 (52%), Gaps = 25/568 (4%)

Query: 1    MHDVVRYVAQQIASK---NKFLIKAGVELKDWPSINTFEDLTGISLMFNDIHEVHEGLQC 57
            MHDVVR +A  +AS    N F++++G  LK+WP+ +++E  T ISLM N+I E+ +GL C
Sbjct: 471  MHDVVRDMAILLASSEEDNAFMVQSGSALKEWPTKDSYEAYTAISLMSNEIEELPDGLVC 530

Query: 58   PRLQALFLQKN-DLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLH 116
            P+LQ L LQ N D+ +IPD FF     L+VLDL G+ + SL   P SL  L +LRTL L 
Sbjct: 531  PKLQTLLLQNNNDIQEIPDDFFGSFHSLRVLDLNGADIPSL---PPSLGLLRSLRTLCLD 587

Query: 117  DCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLS 176
             CQ   D+S++G+L  LEIL L ES + ++P    +L +LR+LD T   N++ IP  V+S
Sbjct: 588  CCQSITDISILGKLEKLEILSLRESYIEDLPEELAQLANLRMLDFTMSNNIKSIPPKVIS 647

Query: 177  RLRKLEELYMSKTFCHWQFENEDDSR-SNAKFIELGALSRLTSLHIDIPEGEIMPSDMSF 235
             L +LEE+YM  +F  W    E  S  +NA F EL  L RL  L +DI + E MP  + F
Sbjct: 648  SLSRLEEMYMQGSFADWGLLLEGTSSGANAGFDELTCLHRLNILKVDISDAECMPKTVRF 707

Query: 236  Q-NLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSRAMGLSQDMRISALPSWIKNLLL-R 293
              N  +F I I        + F+ V   +     SR++ L  D+ I+ LP W   +   R
Sbjct: 708  DPNWVNFDICIN---RKLFNRFMNVHLSRVTAARSRSLIL--DVTINTLPDWFNKVATER 762

Query: 294  SEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLL-KLEWL 352
            +E L       L+NI+ +      N L  L +  C+++ +L++++       L   LE L
Sbjct: 763  TEKLYYIKCRGLDNILMEYDQGSLNGLKILLVQSCHQIVHLMDAVTYIPNRPLFPSLEEL 822

Query: 353  MIVDNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLK-ILPSHLVQSFQNLQRLRVEGCE 411
             + +     EIC GQLP G L N+K L V  C  ++  +LP++L++  ++L+ L V G  
Sbjct: 823  RVHNLDYLKEICIGQLPPGSLGNMKFLQVEQCNELVNGLLPANLLRRLESLEVLDVSG-S 881

Query: 412  LLVSVFEIERVNIAKEETELFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFCD 471
             L  +F  E +   +E   +   L +L    LP + +IW G TQ    H+LK + V+ C 
Sbjct: 882  YLEDIFRTEGL---REGEVVVGKLRELKRDNLPELKNIWYGPTQLAIFHNLKILTVIKCR 938

Query: 472  ELRQVFPANLGK--KAAAEEMVLYRNRRDQ-IHIHATTSTSSPTPSLGNLVSITIRGCGK 528
            +LR +F  ++ +  +   E  + Y N  +  I IH             NL +++++    
Sbjct: 939  KLRILFTYSVAQSLRHLEELWIEYCNGLEGVIGIHEGGDVVERI-IFQNLKNLSLQNLPV 997

Query: 529  LRNLFTTSMVKSLVRLESLEVSRCPTLQ 556
            LR+ +          LE L V  CPT +
Sbjct: 998  LRSFYEGDARIECPSLEQLHVQGCPTFR 1025

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542484|ref|XP_002512305.1| phosphoprotein phosphatase, putative [Ricinus communis] gi|223548266|gb|EEF49757.1| phosphoprotein phosphatase, putative [Ricinus communis]

 Score =  262 bits (670), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 204/630 (32%), Positives = 321/630 (50%), Gaps = 38/630 (6%)

Query: 1    MHDVVRYVAQQIASKNK--FLIKAGVELKDWPSINTFEDLTGISLMFNDIHEVHEGLQCP 58
            MHDVV   A  +AS++   F +     L++WP  +  E  T ISL    I ++ E  +CP
Sbjct: 415  MHDVVHNFATLVASRDHHVFAVACDSGLEEWPEKDILEQFTAISLPDCKIPKLPEVFECP 474

Query: 59   RLQALFL-QKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHD 117
             LQ+  L  K+  L IPD FF  MK LK++DL       L  +P SL  L NL+TL L  
Sbjct: 475  DLQSFLLYNKDSSLKIPDNFFSRMKKLKLMDLSN---VHLSPMPLSLQCLENLQTLCLDR 531

Query: 118  CQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSR 177
            C    D++ IGEL  L++L    S + ++P   G+L  L+LLDL+ C  LE+IP+GVLS 
Sbjct: 532  CT-LEDIAAIGELKKLQVLSFIGSTMVQLPREVGKLTRLQLLDLSRCQKLEVIPKGVLSC 590

Query: 178  LRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSDMSFQN 237
            L KLEELYM  +F  W+ E  D  R+NA   EL  L  L +L + I   EI+P D+  + 
Sbjct: 591  LTKLEELYMGNSFVQWESEEHDGDRNNASLDELKLLPNLVTLELHIINAEILPRDVFSEK 650

Query: 238  LTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEIL 297
            L  + + IG           E +S   K   SR + L  +  I      +K LL+ +E L
Sbjct: 651  LDLYKVFIG-----------EEWSWFGKYEASRTLKLKLNSSIEI--EKVKVLLMTTEDL 697

Query: 298  ALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLER-TLRVTLLKLEWLMIVD 356
             L ++  + N++ +L   GF +L  L I   +E++Y+++ L      +   +LE L++ +
Sbjct: 698  YLDELEGVRNVLYELDGQGFPQLKHLHIQNSSEIQYIVDCLSMGNHYIAFPRLESLLVDN 757

Query: 357  NRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSV 416
              N  +IC+GQL +G  S +++L V  C ++  +    + +    L+ + V  C ++  +
Sbjct: 758  LNNLGQICYGQLMSGSFSKLRKLKVEHCNALKNLFYFSMFRGLVQLEEIDVSSCNIMEEI 817

Query: 417  FEIERVNIA-KEETELFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFCDELRQ 475
               E  + + ++E      L  LTL  LPR T       Q ++  D        C ++  
Sbjct: 818  VVEEIEDDSGRDEIIKPIRLRTLTLEYLPRFTSFCSQRMQKLAGLD------AGCAQIIS 871

Query: 476  VFPANL-GKKAAAEEMV-LYRNRRDQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLF 533
              P+ L G+K     ++ L  +  + +          P  S+ NL S+ + GCGKL  LF
Sbjct: 872  ETPSVLFGQKIEFSNLLNLKLSSINNMEKIWRNQVKEPPSSVQNLTSLIVEGCGKLSYLF 931

Query: 534  TTSMVKSLVRLESLEVSRCPTLQEIIMNDEGEVGLQGASTEKITFPSLFSIQLCLLDSLT 593
            T+SMV++L +LE LE+S C  ++EII+ +    GL   ++ K+ FP L +++L  L +L 
Sbjct: 932  TSSMVENLSQLEYLEISDCSFMEEIIVAE----GLTKHNS-KLHFPILHTLKLKSLPNLI 986

Query: 594  CFCSSGSHATVEFLALEALQIIDCPGMKTF 623
             FC       +E  +L AL+I +CP +  F
Sbjct: 987  RFCFGN---LIECPSLNALRIENCPRLLKF 1013

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735460|emb|CBI17900.3| unnamed protein product [Vitis vinifera]

 Score =  254 bits (648), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 189/570 (33%), Positives = 291/570 (51%), Gaps = 50/570 (8%)

Query: 1    MHDVVRYVAQQIASK---NKFLIKAGVELKDWPSINTFEDLTGISLMFNDIHEVHEGLQC 57
            MHDVVR +A  +AS    N F++++G  LK+WP+ +++E  T ISLM N+I E+ +GL C
Sbjct: 471  MHDVVRDMAILLASSEEDNAFMVQSGSALKEWPTKDSYEAYTAISLMSNEIEELPDGLVC 530

Query: 58   PRLQALFLQKN-DLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLH 116
            P+LQ L LQ N D+ +IPD FF     L+VLDL G+ + SL   P SL  L +LRTL L 
Sbjct: 531  PKLQTLLLQNNNDIQEIPDDFFGSFHSLRVLDLNGADIPSL---PPSLGLLRSLRTLCLD 587

Query: 117  DCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLS 176
             CQ   D+S++G+L  LEIL L ES + ++P    +L +LR+LD T   N++ IP  V+S
Sbjct: 588  CCQSITDISILGKLEKLEILSLRESYIEDLPEELAQLANLRMLDFTMSNNIKSIPPKVIS 647

Query: 177  RLRKLEELYMSKTFCHWQFENEDDSR-SNAKFIELGALSRLTSLHIDIPEGEIMPSDMSF 235
             L +LEE+YM  +F  W    E  S  +NA F EL  L RL  L +DI + E MP  + F
Sbjct: 648  SLSRLEEMYMQGSFADWGLLLEGTSSGANAGFDELTCLHRLNILKVDISDAECMPKTVRF 707

Query: 236  Q-NLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSRAMGLSQDMRISALPSWIKNLLL-R 293
              N  +F I I        + F+ V   +     SR++ L  D+ I+ LP W   +   R
Sbjct: 708  DPNWVNFDICIN---RKLFNRFMNVHLSRVTAARSRSLIL--DVTINTLPDWFNKVATER 762

Query: 294  SEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLL-KLEWL 352
            +E L       L+NI+ +      N L  L +  C+++ +L++++       L   LE L
Sbjct: 763  TEKLYYIKCRGLDNILMEYDQGSLNGLKILLVQSCHQIVHLMDAVTYIPNRPLFPSLEEL 822

Query: 353  MIVDNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLK-ILPSHLVQSFQNLQRLRVEGCE 411
             + +     EIC GQLP G L N+K L V  C  ++  +LP++L++  ++L+ L V G  
Sbjct: 823  RVHNLDYLKEICIGQLPPGSLGNMKFLQVEQCNELVNGLLPANLLRRLESLEVLDVSG-S 881

Query: 412  LLVSVFEIERVNIAKEETELFSSLEKLTLIGLPRMTDIWKGDTQFV-----SLHDLKKIR 466
             L  +F  E +   +E   +   L +L    LP + +IWK    F      SL  L+++ 
Sbjct: 882  YLEDIFRTEGL---REGEVVVGKLRELKRDNLPELKNIWKLRILFTYSVAQSLRHLEELW 938

Query: 467  VVFCDELRQVFPANLGKKAAAEEMVLYRNRRDQIHIHATTSTSSPTPSLGNLVSITIRGC 526
            + +C+ L  V   + G      E ++++                      NL +++++  
Sbjct: 939  IEYCNGLEGVIGIHEGGDVV--ERIIFQ----------------------NLKNLSLQNL 974

Query: 527  GKLRNLFTTSMVKSLVRLESLEVSRCPTLQ 556
              LR+ +          LE L V  CPT +
Sbjct: 975  PVLRSFYEGDARIECPSLEQLHVQGCPTFR 1004

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488103|ref|XP_002263579.2| PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera]

 Score =  254 bits (648), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 201/636 (31%), Positives = 308/636 (48%), Gaps = 74/636 (11%)

Query: 1    MHDVVRYVAQQIASKNKFLI---KAGVELKDWPSINTFEDLTGISLMFNDIHEVHEGLQC 57
            MHD+VR  A++IAS+   +    K  V +++W  I+  + +T + L   DIHE+ EGL C
Sbjct: 464  MHDLVRSTARKIASEQHHVFTHQKTTVRVEEWSRIDELQ-VTWVKLHHCDIHELPEGLVC 522

Query: 58   PRLQAL--FLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSL 115
            P+L+    FL+ N  + IP+ FF+GMK LKVLDL G     L SLP SL  L NLRTL L
Sbjct: 523  PKLEFFECFLKTNLAVKIPNTFFEGMKQLKVLDLTG---MQLPSLPLSLQSLANLRTLCL 579

Query: 116  HDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVL 175
              C+  GD+ +I EL  LEIL L +SD+ ++P    +L HLRL DL   + L++IP  V+
Sbjct: 580  DGCK-LGDIVIIAELKKLEILSLMDSDIEQLPREIAQLTHLRLFDLKSSFKLKVIPSDVI 638

Query: 176  SRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSDMSF 235
            S L +LE+L M  +F  W    E + +SNA   EL  LS LT+L I IP+ +++P DM F
Sbjct: 639  SSLFRLEDLCMENSFTQW----EGEGKSNACLAELKHLSHLTALDIQIPDAKLLPKDMVF 694

Query: 236  QNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSE 295
             NL  + I +G          I ++ + +K   +R + L++      L   I  LL R+E
Sbjct: 695  DNLMRYRIFVGD---------IWIWEKNYK--TNRILKLNKFDTSLHLVDGISKLLKRTE 743

Query: 296  ILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERT-LRVTLLKLEWLMI 354
             L L ++    N++S L  +GF +L  L +    E++Y++NS++ T        +E L +
Sbjct: 744  DLHLRELCGGTNVLSKLNREGFLKLKHLNVESSPEIQYIVNSMDLTSSHAAFPVMETLSL 803

Query: 355  VDNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLV 414
                N  E+CHGQ PAG    +++++V DC  +  +    + +    L+  +V  C+ +V
Sbjct: 804  NQLINLQEVCHGQFPAGSFGCLRKVEVEDCDGLKFLFSLSVARGLSRLEETKVTRCKSMV 863

Query: 415  SVFEIERVNIAKEETE--LFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFCDE 472
             +    R  I ++     LF  L  LTL  LP++++                    FC E
Sbjct: 864  EMVSQGRKEIKEDAVNVPLFPELRSLTLKDLPKLSN--------------------FCFE 903

Query: 473  LRQVF--PANLGKKAAAEEMVLYRNRRDQIHIHATTSTSS-------------PTPSLGN 517
               V   PA+     +   +     R  Q+ +    +  S             P   L N
Sbjct: 904  ENPVLSKPASTIVGPSTPPLNQPEIRDGQLLLSLGGNLRSLKLKNCMSLLKLFPPSLLQN 963

Query: 518  LVSITIRGCGKLRNLF-------TTSMVKSLVRLESLEVSRCPTLQEII----MNDEGEV 566
            L  +T++ C KL  +F           V+ L +L+ L +   P L+ I       +    
Sbjct: 964  LQELTLKDCDKLEQVFDLEELNVDDGHVELLPKLKELRLIGLPKLRHICNCGSSRNHFPS 1023

Query: 567  GLQGASTEKITFPSLFSIQLCLLDSLTCFCSSGSHA 602
             +  A    I FP L  I L  L +LT F S G H+
Sbjct: 1024 SMASAPVGNIIFPKLSDITLESLPNLTSFVSPGYHS 1059

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	623
TAIR|locus:2136447	985	AT4G27190 [Arabidopsis thalian	0.707	0.447	0.248	7e-14
TAIR|locus:2005517	909	RPS2 "RESISTANT TO P. SYRINGAE	0.415	0.284	0.255	1.2e-12
TAIR|locus:2201996	889	RPS5 "AT1G12220" [Arabidopsis	0.138	0.096	0.417	1.7e-11
TAIR|locus:2131689	919	AT4G27220 [Arabidopsis thalian	0.736	0.499	0.229	2e-11
TAIR|locus:2201986	885	RFL1 "AT1G12210" [Arabidopsis	0.138	0.097	0.347	7.2e-10
TAIR|locus:2008440	899	AT1G61180 [Arabidopsis thalian	0.138	0.095	0.406	1.6e-09
TAIR|locus:2031366	898	AT1G63350 "AT1G63350" [Arabido	0.138	0.095	0.351	3.5e-09
TAIR|locus:2034770	894	SUMM2 "AT1G12280" [Arabidopsis	0.126	0.088	0.411	1.8e-08
TAIR|locus:2034765	884	AT1G12290 [Arabidopsis thalian	0.138	0.097	0.391	3.2e-08
TAIR|locus:2008510	967	AT1G61190 "AT1G61190" [Arabido	0.138	0.088	0.362	3.8e-08

TAIR|locus:2136447 AT4G27190 [Arabidopsis thaliana (taxid:3702)]

 Score = 215 (80.7 bits), Expect = 7.0e-14, P = 7.0e-14
 Identities = 124/498 (24%), Positives = 200/498 (40%)

Query:     1 MHDVVRYVAQQIASKNK----FLIKAGVELKDWPSINTFEDLTGISLMFNDIHEVHEGLQ 56
             MHDVVR  A  I S ++     L+ +G  L+D         L  +SLM N +  + + ++
Sbjct:   462 MHDVVRDFAIWIMSSSQDDSHSLVMSGTGLQDIRQDKLAPSLRRVSLMNNKLESLPDLVE 521

Query:    57 --CPRLQALFLQKNDLL-DIPDPFFQGMKDLKVXXXXXXXXXXXXXXXXXXXXXINLRTL 113
               C +   L LQ N LL ++P  F Q    L++                      +L +L
Sbjct:   522 EFCVKTSVLLLQGNFLLKEVPIGFLQAFPTLRILNLSGTRIKSFPSCSLLRL--FSLHSL 579

Query:   114 SLHDCQHFXXXXXXXXXXXXXXXXXXXXXVSEIPVSFGRLGHLRLLDLTDCYNLELIPRG 173
              L DC                        + E P     L   R LDL+   +LE IP  
Sbjct:   580 FLRDCFKLVKLPSLETLAKLELLDLCGTHILEFPRGLEELKRFRHLDLSRTLHLESIPAR 639

Query:   174 VLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSDM 233
             V+SRL  LE L M+ +   W  + E   +  A   E+G L RL  L I +     + +  
Sbjct:   640 VVSRLSSLETLDMTSSHYRWSVQGETQ-KGQATVEEIGCLQRLQVLSIRLHSSPFLLNKR 698

Query:   234 S--FQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSRA-MGLSQDMRISALPSWIKNL 290
             +   + L  F + +G       S +I + +R  K+R + + + +SQ   +S    W   L
Sbjct:   699 NTWIKRLKKFQLVVG-------SRYI-LRTRHDKRRLTISHLNVSQ---VSI--GW---L 742

Query:   291 LLRSEILALGDVNDLENIVSDLAHD--GFNELMFLAI----VGCN---EMKYLLNSLERT 341
             L  +  LAL     +E ++  L  D  GF  L  L I    +  N   EM     S + +
Sbjct:   743 LAYTTSLALNHCQGIEAMMKKLVSDNKGFKNLKSLTIENVIINTNSWVEMVSTNTSKQSS 802

Query:   342 LRVTLL-KLEWLMI--VDNRNFVEICHGQLPAGC-LSNVKRLDVRDCGSVLKILPSHLVQ 397
               + LL  LE L +  VD   F E+   Q   G  L  +K +++  C  +  +L      
Sbjct:   803 DILDLLPNLEELHLRRVDLETFSEL---QTHLGLKLETLKIIEITMCRKLRTLLDKRNFL 859

Query:   398 SFQNLQRLRVEGCELLVSVFEIERVNIAKEETELFSSLEKLTLIGLPRMTDI--WKGDTQ 455
             +  NL+ + +  C+ L ++ E    +          +L  L L  LP +  I  W G+  
Sbjct:   860 TIPNLEEIEISYCDSLQNLHEALLYH-----QPFVPNLRVLKLRNLPNLVSICNW-GEVW 913

Query:   456 FVSLHDLKKIRVVFCDEL 473
                   L+++ V+ C++L
Sbjct:   914 ----ECLEQVEVIHCNQL 927

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2005517 RPS2 "RESISTANT TO P. SYRINGAE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
 Identities = 71/278 (25%), Positives = 122/278 (43%)

Query:   143 VSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFEN-EDDS 201
             +S +P   G L  L+ LDL     L+ IPR  +  L KLE L +  ++  W+ ++  +D 
Sbjct:   593 ISVLPQELGNLRKLKHLDLQRTQFLQTIPRDAICWLSKLEVLNLYYSYAGWELQSFGEDE 652

Query:   202 RSNAKFIELGALSRLTSLHIDIPEGEIMPSDMSFQNLTSFSITIGGPEEVPLSDFIEVFS 261
                  F +L  L  LT+L I +   E + +   F  L    I     EE     +  + S
Sbjct:   653 AEELGFADLEYLENLTTLGITVLSLETLKTLFEFGALHKH-IQHLHVEECNELLYFNLPS 711

Query:   262 RKFKKRCSRAMGLSQ--DMRISALPSWIKNLLLRS-EILALGDVNDLENIVSD-LAHDGF 317
                  R  R + +    D+     P+  +N  L S E+L L  +++L  +  + ++ D  
Sbjct:   712 LTNHGRNLRRLSIKSCHDLEYLVTPADFENDWLPSLEVLTLHSLHNLTRVWGNSVSQDCL 771

Query:   318 NELMFLAIVGCNEMKYLLNSLERTLRVTLLKLEWLMIVDNRNFVE-ICHGQLPA----GC 372
               +  + I  CN++K + + +++     L KLE + + D R   E I   + P+      
Sbjct:   772 RNIRCINISHCNKLKNV-SWVQK-----LPKLEVIELFDCREIEELISEHESPSVEDPTL 825

Query:   373 LSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGC 410
               ++K L  RD   +  ILPS    SFQ ++ L +  C
Sbjct:   826 FPSLKTLRTRDLPELNSILPSRF--SFQKVETLVITNC 861

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=ISS;TAS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

TAIR|locus:2201996 RPS5 "AT1G12220" [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
 Identities = 38/91 (41%), Positives = 55/91 (60%)

Query:     1 MHDVVRYVAQQIAS-----KNKFLIKAGVELKDWPSINTFEDLTGISLMFNDIHEVHEGL 55
             MHDVVR +A  I+S     K K +++AGV L++ P +  +  +  ISLM N+I E+ +  
Sbjct:   477 MHDVVREMALWISSDLGKQKEKCIVRAGVGLREVPKVKDWNTVRKISLMNNEIEEIFDSH 536

Query:    56 QCPRLQALFLQKNDLLDIPDPFFQGMKDLKV 86
             +C  L  LFLQKND++ I   FF+ M  L V
Sbjct:   537 ECAALTTLFLQKNDVVKISAEFFRCMPHLVV 567

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0006952 "defense response" evidence=IMP;TAS

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0008219 "cell death" evidence=IMP

GO:0038023 "signaling receptor activity" evidence=IMP

GO:0000166 "nucleotide binding" evidence=IMP

GO:0005622 "intracellular" evidence=ISS

TAIR|locus:2131689 AT4G27220 [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 2.0e-11, P = 2.0e-11
 Identities = 114/496 (22%), Positives = 201/496 (40%)

Query:     1 MHDVVR-YVAQQIASKNK-F--LIKAGVELKDWPSINTFEDLTGISLMFNDIHEVHEG-L 55
             MHDVVR +    ++S+ + F  L+ AG  L ++P       +  +SLM N +  +    +
Sbjct:   431 MHDVVRDFAIWFMSSQGEGFHSLVMAGRGLIEFPQDKFVSSVQRVSLMANKLERLPNNVI 490

Query:    56 QCPRLQALFLQKND-LLDIPDPFFQGMKDLKVXXXXXXXXXXXXXXXXXXXXXINLRTLS 114
             +      L LQ N  + ++P+ F Q   +L++                      +LR+L 
Sbjct:   491 EGVETLVLLLQGNSHVKEVPNGFLQAFPNLRILDLSGVRIRTLPDSFSNLH---SLRSLV 547

Query:   115 LHDCQHFXXXXXXXXXXXXXXXXXXXXXVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGV 174
             L +C+                       + E+P     L  LR + +++ Y L+ IP G 
Sbjct:   548 LRNCKKLRNLPSLESLVKLQFLDLHESAIRELPRGLEALSSLRYICVSNTYQLQSIPAGT 607

Query:   175 LSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSDMS 234
             + +L  LE L M+ +   W  + E+     A   E+  L  L  L I + +  ++     
Sbjct:   608 ILQLSSLEVLDMAGSAYSWGIKGEE-REGQATLDEVTCLPHLQFLAIKLLD--VLSFSYE 664

Query:   235 FQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSRAMGLSQDMRIS-ALPSWIKNLLLR 293
             F +LT   +T     +   S    V      + C   + +S D+ +S A   W+   +  
Sbjct:   665 FDSLTK-RLT---KFQFLFSPIRSVSPPGTGEGC---LAIS-DVNVSNASIGWLLQHVTS 716

Query:   294 SEILALGDVNDL-ENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLLKLEWL 352
              ++     +N + EN+V+  +   F  +  L+I     +  L +  E  L +    LE L
Sbjct:   717 LDLNYCEGLNGMFENLVTK-SKSSFVAMKALSIHYFPSLS-LASGCESQLDL-FPNLEEL 773

Query:   353 MIVDNRNFVEICHGQLPA--GC-LSNVKRLDVRDCGSVLKILPSHLVQ-SFQNLQRLRVE 408
              + DN N   I  G+L    G  L  +K L V  C  + ++    ++  +  NLQ ++V 
Sbjct:   774 SL-DNVNLESI--GELNGFLGMRLQKLKLLQVSGCRQLKRLFSDQILAGTLPNLQEIKVV 830

Query:   409 GCELLVSVFEIERVNIAKEETELFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVV 468
              C  L  +F    V +   +    S L KLT+I L  +  +       V L  L+ + V 
Sbjct:   831 SCLRLEELFNFSSVPV---DFCAESLLPKLTVIKLKYLPQLRSLCNDRVVLESLEHLEVE 887

Query:   469 FCDELRQV--FPANLG 482
              C+ L+ +   P N G
Sbjct:   888 SCESLKNLPFVPGNTG 903

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2201986 RFL1 "AT1G12210" [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 7.2e-10, Sum P(3) = 7.2e-10
 Identities = 32/92 (34%), Positives = 50/92 (54%)

Query:     1 MHDVVRYVAQQIAS-----KNKFLIKAGVELKDWPSINTFEDLTGISLMFNDIHEVHEGL 55
             MHD+VR +A  I S     K + +++AG+ L + P +  +  +  +SLM N+  ++    
Sbjct:   476 MHDMVREMALWIFSDLGKHKERCIVQAGIGLDELPEVENWRAVKRMSLMNNNFEKILGSP 535

Query:    56 QCPRLQALFLQKN-DLLDIPDPFFQGMKDLKV 86
             +C  L  LFLQ N  L+DI   FF+ M  L V
Sbjct:   536 ECVELITLFLQNNYKLVDISMEFFRCMPSLAV 567

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0009617 "response to bacterium" evidence=ISS

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2008440 AT1G61180 [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
 Identities = 37/91 (40%), Positives = 52/91 (57%)

Query:     1 MHDVVRYVAQQIAS-----KNKFLIKAGVELKDWPSINTFEDLTGISLMFNDIHEVHEGL 55
             MHDVVR +A  IAS     K  F+++AGV L + P +  +  +  +SLM NDI E+    
Sbjct:   471 MHDVVREMALWIASDFGKQKENFVVQAGVGLHEIPKVKDWGAVRKMSLMDNDIEEITCES 530

Query:    56 QCPRLQALFLQKNDLLDIPDPFFQGMKDLKV 86
             +C  L  LFLQ N L ++P  F + M+ L V
Sbjct:   531 KCSELTTLFLQSNKLKNLPGAFIRYMQKLVV 561

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2031366 AT1G63350 "AT1G63350" [Arabidopsis thaliana (taxid:3702)]

 Score = 110 (43.8 bits), Expect = 3.5e-09, Sum P(3) = 3.5e-09
 Identities = 32/91 (35%), Positives = 47/91 (51%)

Query:     1 MHDVVRYVAQQIAS----KNK-FLIKAGVELKDWPSINTFEDLTGISLMFNDIHEVHEGL 55
             +HDVVR +A  IAS    +N+ F+++A V L++   +  +  +  +SLM N+I  +   L
Sbjct:   475 LHDVVREMALWIASDLGKQNEAFIVRASVGLREILKVENWNVVRRMSLMKNNIAHLDGRL 534

Query:    56 QCPRLQALFLQKNDLLDIPDPFFQGMKDLKV 86
              C  L  L LQ   L  I   FF  M  L V
Sbjct:   535 DCMELTTLLLQSTHLEKISSEFFNSMPKLAV 565

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2034770 SUMM2 "AT1G12280" [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
 Identities = 35/85 (41%), Positives = 50/85 (58%)

Query:     1 MHDVVRYVAQQIAS-----KNKFLIKAGVELKDWPSINTFEDLTGISLMFNDIHEVHEGL 55
             MHDVVR +A  IAS     K + +++ GV L++ P +  +  +  +SLM N+I  +    
Sbjct:   476 MHDVVREMALWIASDLGEHKERCIVQVGVGLREVPKVKNWSSVRRMSLMENEIEILSGSP 535

Query:    56 QCPRLQALFLQKND-LLDIPDPFFQ 79
             +C  L  LFLQKND LL I D FF+
Sbjct:   536 ECLELTTLFLQKNDSLLHISDEFFR 560

GO:0006952 "defense response" evidence=IGI;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2034765 AT1G12290 [Arabidopsis thaliana (taxid:3702)]

 Score = 147 (56.8 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
 Identities = 36/92 (39%), Positives = 55/92 (59%)

Query:     1 MHDVVRYVAQQIAS-----KNKFLIKAGVELKDWPSINTFEDLTGISLMFNDIHEVHEGL 55
             MHDVVR +A  IAS     K+  +++AG  L + P +  ++ ++ +SL+ N I E+H   
Sbjct:   478 MHDVVREMALWIASDLRKHKDNCIVRAGFRLNEIPKVKDWKVVSRMSLVNNRIKEIHGSP 537

Query:    56 QCPRLQALFLQKN-DLLDIPDPFFQGMKDLKV 86
             +CP+L  LFLQ N  L++I   FF+ M  L V
Sbjct:   538 ECPKLTTLFLQDNRHLVNISGEFFRSMPRLVV 569

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2008510 AT1G61190 "AT1G61190" [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
 Identities = 33/91 (36%), Positives = 50/91 (54%)

Query:     1 MHDVVRYVAQQIAS-----KNKFLIKAGVELKDWPSINTFEDLTGISLMFNDIHEVHEGL 55
             MHDVVR +A  IAS     K  ++++A V L + P +  +  +  +SLM N+I E+    
Sbjct:   475 MHDVVREMALWIASDFGKQKENYVVRARVGLHEIPKVKDWGAVRRMSLMMNEIEEITCES 534

Query:    56 QCPRLQALFLQKNDLLDIPDPFFQGMKDLKV 86
             +C  L  LFLQ N L ++   F + M+ L V
Sbjct:   535 KCSELTTLFLQSNQLKNLSGEFIRYMQKLVV 565

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00027341001 SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (963 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	623
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-04
PLN03210	1153	PLN03210, PLN03210, Resistant to P	0.002

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 46.5 bits (110), Expect = 3e-05
 Identities = 55/217 (25%), Positives = 83/217 (38%), Gaps = 17/217 (7%)

Query: 31  SINTFEDLTGISLM-----FNDI-HEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDL 84
            I     L   +L       N I          P L+ L L  NDL D+P      + +L
Sbjct: 130 DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLP-KLLSNLSNL 188

Query: 85  KVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVS 144
             LDL G+    +  LP  +  L  L  L L +      LS +  L  L  L+LS + + 
Sbjct: 189 NNLDLSGNK---ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE 245

Query: 145 EIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKT-------FCHWQFEN 197
           ++P S G L +L  LDL++     +   G L+ LR+L+    S +             E 
Sbjct: 246 DLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLEL 305

Query: 198 EDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSDMS 234
             +     K +EL   S L + +I        P  +S
Sbjct: 306 LLNLLLTLKALELKLNSILLNNNILSNGETSSPEALS 342

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.4 bits (98), Expect = 3e-05
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 2/56 (3%)

Query: 133 LEILDLSESDVSEIPV-SFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMS 187
           L+ LDLS + ++ IP  +F  L +L++LDL+   NL  I     S L  L  L +S
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGN-NLTSISPEAFSGLPSLRSLDLS 56

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.8 bits (94), Expect = 1e-04
 Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 4/62 (6%)

Query: 59  RLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPS-SLSFLINLRTLSLHD 117
            L++L L  N L  IPD  F+G+ +LKVLDL G+   +L S+   + S L +LR+L L  
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGN---NLTSISPEAFSGLPSLRSLDLSG 57

Query: 118 CQ 119
             
Sbjct: 58  NN 59

Length = 60

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 41.0 bits (96), Expect = 0.002
 Identities = 62/245 (25%), Positives = 102/245 (41%), Gaps = 57/245 (23%)

Query: 107 LINLRTLSLHDCQHFGDLSLIGELSL---LEILDLSE-SDVSEIPVSFGRLGHLRLLDLT 162
           L  LR + L   +   +L  I +LS+   LE L LS+ S + E+P S   L  L  LD++
Sbjct: 633 LTGLRNIDLRGSK---NLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS 689

Query: 163 DCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTS---- 218
            C NLE++P G+      L+ LY                      + L   SRL S    
Sbjct: 690 RCENLEILPTGI-----NLKSLYR---------------------LNLSGCSRLKSFPDI 723

Query: 219 ------LHIDIPEGEIMPSDMSFQNLTSFSITIGGPEEV-----PLSDFIEVFSRKFKKR 267
                 L +D    E  PS++  +NL    +     E++     PL+  + + S    + 
Sbjct: 724 STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTR- 782

Query: 268 CSRAMGLSQDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVG 327
               + LS    +  LPS I+N L + E L + +  +LE + + +       L  L + G
Sbjct: 783 ----LFLSDIPSLVELPSSIQN-LHKLEHLEIENCINLETLPTGI---NLESLESLDLSG 834

Query: 328 CNEMK 332
           C+ ++
Sbjct: 835 CSRLR 839

syringae 6; Provisional. Length = 1153

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	623
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.96
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.94
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.94
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.92
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.92
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.91
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.91
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.91
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.9
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.87
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.84
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.69
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.65
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.57
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.56
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.54
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.54
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.53
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.48
KOG4341	483	consensus F-box protein containing LRR [General fu	99.45
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.4
KOG4341	483	consensus F-box protein containing LRR [General fu	99.32
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.3
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.25
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.2
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.11
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.05
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.98
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.95
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.94
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.9
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.86
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.86
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.79
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.49
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.49
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.48
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.48
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.41
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.38
PLN03150	623	hypothetical protein; Provisional	98.34
KOG1947	482	consensus Leucine rich repeat proteins, some prote	98.33
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.33
PLN03150	623	hypothetical protein; Provisional	98.33
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.29
KOG1947	482	consensus Leucine rich repeat proteins, some prote	98.27
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.27
PRK15386	426	type III secretion protein GogB; Provisional	98.21
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.14
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.1
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.09
PRK15386	426	type III secretion protein GogB; Provisional	98.0
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.99
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.92
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.82
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.81
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.69
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.67
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.67
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.62
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.44
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.33
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.28
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.05
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.95
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.93
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.59
KOG3864	221	consensus Uncharacterized conserved protein [Funct	96.38
KOG3864	221	consensus Uncharacterized conserved protein [Funct	96.12
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.6
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.58
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	93.96
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.66
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.62
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	90.67
smart00370	26	LRR Leucine-rich repeats, outliers.	88.36
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	88.36
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	87.82
smart00370	26	LRR Leucine-rich repeats, outliers.	86.98
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	86.98
KOG0473	326	consensus Leucine-rich repeat protein [Function un	83.12

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=7.2e-38  Score=357.69  Aligned_cols=516  Identities=20%  Similarity=0.224  Sum_probs=331.5

Q ss_pred             CCCCCCCCCCC--CCCCcEEEcccCCccc-ccccC-CCCCcceEEccCCCCC-CCChhhHhCCCcccEEEccCCcccccC
Q 036269           24 VELKDWPSINT--FEDLTGISLMFNDIHE-VHEGL-QCPRLQALFLQKNDLL-DIPDPFFQGMKDLKVLDLGGSGVFSLF   98 (623)
Q Consensus        24 ~~~~~~~~~~~--~~~l~~L~l~~~~~~~-l~~~~-~~~~L~~L~l~~~~~~-~l~~~~~~~l~~Lr~L~l~~~~~~~~~   98 (623)
                      .....|.++..  ..+++.|+++++.+.. ++..+ .+++|+.|++++|.+. .+|..++..+++||+|++++|.+.  +
T Consensus        55 ~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~--~  132 (968)
T PLN00113         55 ADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFT--G  132 (968)
T ss_pred             CCCCcCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccc--c
Confidence            44566766643  4579999999998764 34444 8899999999999988 889888889999999999999986  5


Q ss_pred             CCchhhhccccCcEEeccCCcCCC-Cc-ccccCCcCCcEEEcCCCCCc-cccccccCCCccCEEeccCCCCCCcCchhhh
Q 036269           99 SLPSSLSFLINLRTLSLHDCQHFG-DL-SLIGELSLLEILDLSESDVS-EIPVSFGRLGHLRLLDLTDCYNLELIPRGVL  175 (623)
Q Consensus        99 ~lp~~~~~l~~L~~L~l~~~~~l~-~i-~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~  175 (623)
                      .+|.  ..+++|++|++++|. +. .+ ..++++++|++|++++|.+. .+|..++++++|++|++++|.....+|.. +
T Consensus       133 ~~p~--~~l~~L~~L~Ls~n~-~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l  208 (968)
T PLN00113        133 SIPR--GSIPNLETLDLSNNM-LSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-L  208 (968)
T ss_pred             ccCc--cccCCCCEEECcCCc-ccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-H
Confidence            6664  468899999999998 64 34 56889999999999999876 77888999999999999997766677776 8


Q ss_pred             hccccCcEEEecccccccccccccccccccccccccCCCCccEEEeecCCCc-cCCCc-ccccCccEEEEEeCCCCCCCc
Q 036269          176 SRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGE-IMPSD-MSFQNLTSFSITIGGPEEVPL  253 (623)
Q Consensus       176 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~-~~~~~L~~L~l~~~~~~~~~~  253 (623)
                      +++++|++|++++|.+.           ...+..++++++|+.|++++|.+. .+|.. ..+++|+.|+++.+......+
T Consensus       209 ~~l~~L~~L~L~~n~l~-----------~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p  277 (968)
T PLN00113        209 GQMKSLKWIYLGYNNLS-----------GEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP  277 (968)
T ss_pred             cCcCCccEEECcCCccC-----------CcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCc
Confidence            89999999999988773           456677888889999999888754 45554 778888888888776433222


Q ss_pred             chhhhhhhhcccccccceeeeccccccccchHHHHHHHhhceeEeecccCCcccccccccccCccCccEEEEecccCcee
Q 036269          254 SDFIEVFSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKY  333 (623)
Q Consensus       254 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~  333 (623)
                      ..+.       ..+.++.+++..+...+.+|.++..+ ++|+.|++.+|......+..+  ..+++|+.|++++|.-...
T Consensus       278 ~~l~-------~l~~L~~L~Ls~n~l~~~~p~~~~~l-~~L~~L~l~~n~~~~~~~~~~--~~l~~L~~L~L~~n~l~~~  347 (968)
T PLN00113        278 PSIF-------SLQKLISLDLSDNSLSGEIPELVIQL-QNLEILHLFSNNFTGKIPVAL--TSLPRLQVLQLWSNKFSGE  347 (968)
T ss_pred             hhHh-------hccCcCEEECcCCeeccCCChhHcCC-CCCcEEECCCCccCCcCChhH--hcCCCCCEEECcCCCCcCc
Confidence            1221       34567777777766555677776655 788888887776544333333  4577888888888732222


Q ss_pred             ecccccccccccccccceeecccCcccccccccccCC--CcCCCccEEEEeecCCcccccchhHHHhccccceEEEeccc
Q 036269          334 LLNSLERTLRVTLLKLEWLMIVDNRNFVEICHGQLPA--GCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCE  411 (623)
Q Consensus       334 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~--~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~  411 (623)
                      ++.     ....+++|+.|+++++. +.    +.+|.  ..+++|+.|++++| .+.+..|.. +..+++|+.|++++ +
T Consensus       348 ~p~-----~l~~~~~L~~L~Ls~n~-l~----~~~p~~~~~~~~L~~L~l~~n-~l~~~~p~~-~~~~~~L~~L~L~~-n  414 (968)
T PLN00113        348 IPK-----NLGKHNNLTVLDLSTNN-LT----GEIPEGLCSSGNLFKLILFSN-SLEGEIPKS-LGACRSLRRVRLQD-N  414 (968)
T ss_pred             CCh-----HHhCCCCCcEEECCCCe-eE----eeCChhHhCcCCCCEEECcCC-EecccCCHH-HhCCCCCCEEECcC-C
Confidence            222     34456778888887775 22    22221  23566777777764 344445544 56677777777777 3


Q ss_pred             cceeeeeccceeccccccccccCccEEecCCccchhhcccCCCcccccCCccEEEEEcCCCcceeccCcccCcccchhhh
Q 036269          412 LLVSVFEIERVNIAKEETELFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFCDELRQVFPANLGKKAAAEEMV  491 (623)
Q Consensus       412 ~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~L~~L~l~~C~~l~~~~~~~l~~~~~L~~l~  491 (623)
                      .++...        +..+..+++|+.|++++|.-...+   +.....+++|+.|++++|.-. ..+|..+ ...+|+.|+
T Consensus       415 ~l~~~~--------p~~~~~l~~L~~L~Ls~N~l~~~~---~~~~~~l~~L~~L~L~~n~~~-~~~p~~~-~~~~L~~L~  481 (968)
T PLN00113        415 SFSGEL--------PSEFTKLPLVYFLDISNNNLQGRI---NSRKWDMPSLQMLSLARNKFF-GGLPDSF-GSKRLENLD  481 (968)
T ss_pred             EeeeEC--------ChhHhcCCCCCEEECcCCcccCcc---ChhhccCCCCcEEECcCceee-eecCccc-ccccceEEE
Confidence            343322        444556666666766666322222   222334566666666665332 2223332 235566666


Q ss_pred             hhcccccccceeccccCCCCCCCCCCccEEEEecCCCcceecchhhhhccCCCCEEEEccCCchhhhhcCCCCcccCcCC
Q 036269          492 LYRNRRDQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSRCPTLQEIIMNDEGEVGLQGA  571 (623)
Q Consensus       492 ~~~~~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~  571 (623)
                      +.+|..       .+..|..+..+++|+.|++++|.-...+|.  .+.++++|++|++++|.-...++.           
T Consensus       482 ls~n~l-------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~-----------  541 (968)
T PLN00113        482 LSRNQF-------SGAVPRKLGSLSELMQLKLSENKLSGEIPD--ELSSCKKLVSLDLSHNQLSGQIPA-----------  541 (968)
T ss_pred             CcCCcc-------CCccChhhhhhhccCEEECcCCcceeeCCh--HHcCccCCCEEECCCCcccccCCh-----------
Confidence            665532       334455555566666666666432223322  245566666666666652222211           


Q ss_pred             CcceeecCcccceecccCcccceecCCCCcceeecCCccEEEeccCC
Q 036269          572 STEKITFPSLFSIQLCLLDSLTCFCSSGSHATVEFLALEALQIIDCP  618 (623)
Q Consensus       572 ~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~  618 (623)
                        ....+++|+.|++++|.....++. ...   .+++|+.+++++|+
T Consensus       542 --~~~~l~~L~~L~Ls~N~l~~~~p~-~l~---~l~~L~~l~ls~N~  582 (968)
T PLN00113        542 --SFSEMPVLSQLDLSQNQLSGEIPK-NLG---NVESLVQVNISHNH  582 (968)
T ss_pred             --hHhCcccCCEEECCCCcccccCCh-hHh---cCcccCEEeccCCc
Confidence              233455566666665554444433 221   24556666665554

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=3.6e-37  Score=351.91  Aligned_cols=489  Identities=19%  Similarity=0.216  Sum_probs=382.6

Q ss_pred             CCCCCCCcEEEcccCCcc-cccccC--CCCCcceEEccCCCCC-CCChhhHhCCCcccEEEccCCcccccCCCchhhhcc
Q 036269           32 INTFEDLTGISLMFNDIH-EVHEGL--QCPRLQALFLQKNDLL-DIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFL  107 (623)
Q Consensus        32 ~~~~~~l~~L~l~~~~~~-~l~~~~--~~~~L~~L~l~~~~~~-~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l  107 (623)
                      ...++.|+.|++++|.+. .+|...  .+++|++|++++|.+. .+|.   ..+++|++|++++|.+.  +.+|..+.++
T Consensus        89 ~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n~~~--~~~p~~~~~l  163 (968)
T PLN00113         89 IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNNMLS--GEIPNDIGSF  163 (968)
T ss_pred             HhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEEECcCCccc--ccCChHHhcC
Confidence            356789999999999986 677654  7899999999999987 5554   56899999999999996  6889999999


Q ss_pred             ccCcEEeccCCcCCC-Cc-ccccCCcCCcEEEcCCCCCc-cccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEE
Q 036269          108 INLRTLSLHDCQHFG-DL-SLIGELSLLEILDLSESDVS-EIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEEL  184 (623)
Q Consensus       108 ~~L~~L~l~~~~~l~-~i-~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L  184 (623)
                      ++|++|++++|. +. .+ ..++++++|++|++++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|
T Consensus       164 ~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L  241 (968)
T PLN00113        164 SSLKVLDLGGNV-LVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHL  241 (968)
T ss_pred             CCCCEEECccCc-ccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEE
Confidence            999999999998 63 44 67899999999999999887 78999999999999999997766678876 8999999999


Q ss_pred             EecccccccccccccccccccccccccCCCCccEEEeecCCCc-cCCCc-ccccCccEEEEEeCCCCCCCcchhhhhhhh
Q 036269          185 YMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGE-IMPSD-MSFQNLTSFSITIGGPEEVPLSDFIEVFSR  262 (623)
Q Consensus       185 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  262 (623)
                      ++++|.+.           ...+..++++++|+.|++++|.+. .+|.. ..+++|+.|+++++......+..+.     
T Consensus       242 ~L~~n~l~-----------~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-----  305 (968)
T PLN00113        242 DLVYNNLT-----------GPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI-----  305 (968)
T ss_pred             ECcCceec-----------cccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHc-----
Confidence            99999873           456778899999999999999864 45555 7789999999988764433222121     


Q ss_pred             cccccccceeeeccccccccchHHHHHHHhhceeEeecccCCcccccccccccCccCccEEEEecccCce-eeccccccc
Q 036269          263 KFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMK-YLLNSLERT  341 (623)
Q Consensus       263 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~  341 (623)
                        ..+.++.+.+..+...+..|.++..+ ++|+.|++++|......+..+  ..+++|+.|++++| .+. .++.     
T Consensus       306 --~l~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~p~~l--~~~~~L~~L~Ls~n-~l~~~~p~-----  374 (968)
T PLN00113        306 --QLQNLEILHLFSNNFTGKIPVALTSL-PRLQVLQLWSNKFSGEIPKNL--GKHNNLTVLDLSTN-NLTGEIPE-----  374 (968)
T ss_pred             --CCCCCcEEECCCCccCCcCChhHhcC-CCCCEEECcCCCCcCcCChHH--hCCCCCcEEECCCC-eeEeeCCh-----
Confidence              45678889988877766778877766 899999999887544444333  56789999999999 343 2222     


Q ss_pred             ccccccccceeecccCcccccccccccC--CCcCCCccEEEEeecCCcccccchhHHHhccccceEEEeccccceeeeec
Q 036269          342 LRVTLLKLEWLMIVDNRNFVEICHGQLP--AGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEI  419 (623)
Q Consensus       342 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~--~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~  419 (623)
                      ....+++|+.|++.++. +    .+.+|  .+.+++|+.|++.+| .+++..|.. +..+++|+.|++++ +.++...  
T Consensus       375 ~~~~~~~L~~L~l~~n~-l----~~~~p~~~~~~~~L~~L~L~~n-~l~~~~p~~-~~~l~~L~~L~Ls~-N~l~~~~--  444 (968)
T PLN00113        375 GLCSSGNLFKLILFSNS-L----EGEIPKSLGACRSLRRVRLQDN-SFSGELPSE-FTKLPLVYFLDISN-NNLQGRI--  444 (968)
T ss_pred             hHhCcCCCCEEECcCCE-e----cccCCHHHhCCCCCCEEECcCC-EeeeECChh-HhcCCCCCEEECcC-CcccCcc--
Confidence            34456789999999887 2    22333  246899999999996 455556665 78999999999999 6666543  


Q ss_pred             cceeccccccccccCccEEecCCccchhhcccCCCcccccCCccEEEEEcCCCcceeccCcccCcccchhhhhhcccccc
Q 036269          420 ERVNIAKEETELFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFCDELRQVFPANLGKKAAAEEMVLYRNRRDQ  499 (623)
Q Consensus       420 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~L~~L~l~~C~~l~~~~~~~l~~~~~L~~l~~~~~~~~~  499 (623)
                            +.....+++|+.|++++|.-...+   +. ....++|+.|++++| .+....|..+..+++|++|++.+|.   
T Consensus       445 ------~~~~~~l~~L~~L~L~~n~~~~~~---p~-~~~~~~L~~L~ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~---  510 (968)
T PLN00113        445 ------NSRKWDMPSLQMLSLARNKFFGGL---PD-SFGSKRLENLDLSRN-QFSGAVPRKLGSLSELMQLKLSENK---  510 (968)
T ss_pred             ------ChhhccCCCCcEEECcCceeeeec---Cc-ccccccceEEECcCC-ccCCccChhhhhhhccCEEECcCCc---
Confidence                  445567899999999999655444   22 223688999999995 5666668888899999999999883   


Q ss_pred             cceeccccCCCCCCCCCCccEEEEecCCCcceecchhhhhccCCCCEEEEccCCchhhhhcCCCCcccCcCCCcceeecC
Q 036269          500 IHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSRCPTLQEIIMNDEGEVGLQGASTEKITFP  579 (623)
Q Consensus       500 l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~  579 (623)
                          +.+..|..+..+++|+.|++++|.-...+ | ..+..+++|++|++++|.-...+|.             ....++
T Consensus       511 ----l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p-~~~~~l~~L~~L~Ls~N~l~~~~p~-------------~l~~l~  571 (968)
T PLN00113        511 ----LSGEIPDELSSCKKLVSLDLSHNQLSGQI-P-ASFSEMPVLSQLDLSQNQLSGEIPK-------------NLGNVE  571 (968)
T ss_pred             ----ceeeCChHHcCccCCCEEECCCCcccccC-C-hhHhCcccCCEEECCCCcccccCCh-------------hHhcCc
Confidence                35667888889999999999996544444 3 2478899999999999984445543             456788


Q ss_pred             cccceecccCcccceecC
Q 036269          580 SLFSIQLCLLDSLTCFCS  597 (623)
Q Consensus       580 ~L~~L~l~~c~~l~~~~~  597 (623)
                      +|+.|++++|+-...++.
T Consensus       572 ~L~~l~ls~N~l~~~~p~  589 (968)
T PLN00113        572 SLVQVNISHNHLHGSLPS  589 (968)
T ss_pred             ccCEEeccCCcceeeCCC
Confidence            999999999987766665

>PLN03210 Resistant to P

Probab=99.96  E-value=5.2e-29  Score=284.42  Aligned_cols=386  Identities=21%  Similarity=0.268  Sum_probs=239.0

Q ss_pred             CCChhhHhCCCcccEEEccCCcccc----cCCCchhhhccc-cCcEEeccCCcCCCCcccccCCcCCcEEEcCCCCCccc
Q 036269           72 DIPDPFFQGMKDLKVLDLGGSGVFS----LFSLPSSLSFLI-NLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVSEI  146 (623)
Q Consensus        72 ~l~~~~~~~l~~Lr~L~l~~~~~~~----~~~lp~~~~~l~-~L~~L~l~~~~~l~~i~~~~~l~~L~~L~l~~~~i~~l  146 (623)
                      ++....|.++++|++|.+..+....    ...+|..+..++ +|+.|++.+++ ++.++..-...+|++|+++++.+..+
T Consensus       548 ~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~-l~~lP~~f~~~~L~~L~L~~s~l~~L  626 (1153)
T PLN03210        548 HIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYP-LRCMPSNFRPENLVKLQMQGSKLEKL  626 (1153)
T ss_pred             eecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCC-CCCCCCcCCccCCcEEECcCcccccc
Confidence            4556668899999999887653210    024666666654 69999999988 77774434678999999999999999


Q ss_pred             cccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecccccccccccccccccccccccccCCCCccEEEeecCC-
Q 036269          147 PVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPE-  225 (623)
Q Consensus       147 p~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-  225 (623)
                      |.++..+++|+.|+++++..++.+|.  +..+++|+.|++.+|...           ...+..++.+++|+.|++++|. 
T Consensus       627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L-----------~~lp~si~~L~~L~~L~L~~c~~  693 (1153)
T PLN03210        627 WDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSL-----------VELPSSIQYLNKLEDLDMSRCEN  693 (1153)
T ss_pred             ccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCc-----------cccchhhhccCCCCEEeCCCCCC
Confidence            98899999999999998888888885  788899999999887542           3556677888888888887754 


Q ss_pred             CccCCCcccccCccEEEEEeCCCCCCCcchhhhhhhhcccccccceeeeccccccccchHHHHHHHhhceeEeecccCCc
Q 036269          226 GEIMPSDMSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEILALGDVNDL  305 (623)
Q Consensus       226 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  305 (623)
                      +..+|....+                                                        ++|+.|++++|..+
T Consensus       694 L~~Lp~~i~l--------------------------------------------------------~sL~~L~Lsgc~~L  717 (1153)
T PLN03210        694 LEILPTGINL--------------------------------------------------------KSLYRLNLSGCSRL  717 (1153)
T ss_pred             cCccCCcCCC--------------------------------------------------------CCCCEEeCCCCCCc
Confidence            3333332223                                                        34555555555443


Q ss_pred             ccccccccccCccCccEEEEecccCceeecccccccccccccccceeecccCccccccccccc-----CCCcCCCccEEE
Q 036269          306 ENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLLKLEWLMIVDNRNFVEICHGQL-----PAGCLSNVKRLD  380 (623)
Q Consensus       306 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-----~~~~~~~L~~L~  380 (623)
                      ...+ .    ...+|+.|+++++ .++.++..      ..+++|+.|.+.++.... ++....     .....++|+.|+
T Consensus       718 ~~~p-~----~~~nL~~L~L~~n-~i~~lP~~------~~l~~L~~L~l~~~~~~~-l~~~~~~l~~~~~~~~~sL~~L~  784 (1153)
T PLN03210        718 KSFP-D----ISTNISWLDLDET-AIEEFPSN------LRLENLDELILCEMKSEK-LWERVQPLTPLMTMLSPSLTRLF  784 (1153)
T ss_pred             cccc-c----ccCCcCeeecCCC-cccccccc------ccccccccccccccchhh-ccccccccchhhhhccccchhee
Confidence            3321 1    1356777777777 45554432      236777777777654211 000000     011234566666


Q ss_pred             EeecCCcccccchhHHHhccccceEEEeccccceeeeeccceeccccccccccCccEEecCCccchhhcccCCCcccccC
Q 036269          381 VRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEIERVNIAKEETELFSSLEKLTLIGLPRMTDIWKGDTQFVSLH  460 (623)
Q Consensus       381 l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~  460 (623)
                      +++|+.+.. +|.. +.++++|+.|++++|+.++.+         |... .+++|+.|++++|..++.++.      ..+
T Consensus       785 Ls~n~~l~~-lP~s-i~~L~~L~~L~Ls~C~~L~~L---------P~~~-~L~sL~~L~Ls~c~~L~~~p~------~~~  846 (1153)
T PLN03210        785 LSDIPSLVE-LPSS-IQNLHKLEHLEIENCINLETL---------PTGI-NLESLESLDLSGCSRLRTFPD------IST  846 (1153)
T ss_pred             CCCCCCccc-cChh-hhCCCCCCEEECCCCCCcCee---------CCCC-CccccCEEECCCCCccccccc------ccc
Confidence            665554443 4443 455566666666666555554         2222 355566666665555544311      124


Q ss_pred             CccEEEEEcCCCcceeccCcccCcccchhhhhhcccccccceeccccCCCCCCCCCCccEEEEecCCCcceecchhhhhc
Q 036269          461 DLKKIRVVFCDELRQVFPANLGKKAAAEEMVLYRNRRDQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKS  540 (623)
Q Consensus       461 ~L~~L~l~~C~~l~~~~~~~l~~~~~L~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~  540 (623)
                      +|++|++.+ +.++                                ..|.++..+++|+.|++++|++++.++..  ...
T Consensus       847 nL~~L~Ls~-n~i~--------------------------------~iP~si~~l~~L~~L~L~~C~~L~~l~~~--~~~  891 (1153)
T PLN03210        847 NISDLNLSR-TGIE--------------------------------EVPWWIEKFSNLSFLDMNGCNNLQRVSLN--ISK  891 (1153)
T ss_pred             ccCEeECCC-CCCc--------------------------------cChHHHhcCCCCCEEECCCCCCcCccCcc--ccc
Confidence            455555554 2332                                23556678899999999999999998654  678


Q ss_pred             cCCCCEEEEccCCchhhhhcCCCCcccCcCCCcceeecCcccceecccCcccc
Q 036269          541 LVRLESLEVSRCPTLQEIIMNDEGEVGLQGASTEKITFPSLFSIQLCLLDSLT  593 (623)
Q Consensus       541 l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~  593 (623)
                      +++|+.+++++|++++.++.............+....+|+...+...+|.+|.
T Consensus       892 L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~  944 (1153)
T PLN03210        892 LKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLD  944 (1153)
T ss_pred             ccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCC
Confidence            89999999999998886643211000000000112245555566667776654

syringae 6; Provisional

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.94  E-value=4.2e-30  Score=238.88  Aligned_cols=465  Identities=21%  Similarity=0.295  Sum_probs=327.1

Q ss_pred             CCCcEEEcccCCcccccccC-CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEe
Q 036269           36 EDLTGISLMFNDIHEVHEGL-QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLS  114 (623)
Q Consensus        36 ~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~  114 (623)
                      ..+..+.+++|.++.+.+.. .+..+.+|++.+|....+|+++ .++..+..++.++|.+   ..+|..++....|+.|+
T Consensus        45 v~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~ai-g~l~~l~~l~vs~n~l---s~lp~~i~s~~~l~~l~  120 (565)
T KOG0472|consen   45 VDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAI-GELEALKSLNVSHNKL---SELPEQIGSLISLVKLD  120 (565)
T ss_pred             cchhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHH-HHHHHHHHhhcccchH---hhccHHHhhhhhhhhhh
Confidence            45788999999998887766 8889999999999999999986 8999999999999999   89999999999999999


Q ss_pred             ccCCcCCCCc-ccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccccccc
Q 036269          115 LHDCQHFGDL-SLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHW  193 (623)
Q Consensus       115 l~~~~~l~~i-~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~  193 (623)
                      ++++. +..+ +.++.+..|..++..+|+++++|.+++.+.+|..+++.+ +.++.+|++.+. ++.|++++...|..  
T Consensus       121 ~s~n~-~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~-n~l~~l~~~~i~-m~~L~~ld~~~N~L--  195 (565)
T KOG0472|consen  121 CSSNE-LKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEG-NKLKALPENHIA-MKRLKHLDCNSNLL--  195 (565)
T ss_pred             ccccc-eeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccc-cchhhCCHHHHH-HHHHHhcccchhhh--
Confidence            99998 7666 889999999999999999999999999999999999999 678888887455 99999999988877  


Q ss_pred             ccccccccccccccccccCCCCccEEEeecCCCccCCCcccccCccEEEEEeCCCCCCCcchhhhhhhhcc-ccccccee
Q 036269          194 QFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSDMSFQNLTSFSITIGGPEEVPLSDFIEVFSRKF-KKRCSRAM  272 (623)
Q Consensus       194 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~~~l~~l  272 (623)
                                +.+|.+++.+.+|..|++..|.+..+|...++..|.++++..+.....+.        +.+ ..+.+..+
T Consensus       196 ----------~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpa--------e~~~~L~~l~vL  257 (565)
T KOG0472|consen  196 ----------ETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPA--------EHLKHLNSLLVL  257 (565)
T ss_pred             ----------hcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHH--------HHhcccccceee
Confidence                      67899999999999999999999999977888899999888776443332        122 45677777


Q ss_pred             eeccccccccchHHHHHHHhhceeEeecccCCcccccccccccCccCccEEEEecccCceeecccccc-cccccccccce
Q 036269          273 GLSQDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLER-TLRVTLLKLEW  351 (623)
Q Consensus       273 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~-~~~~~~~~L~~  351 (623)
                      ++..+. +..+|+.+.-+ ++|+.|+++++.. +..+..+  +.+ +|+.|.+.|++ ++.+-.+... +....++.|+.
T Consensus       258 DLRdNk-lke~Pde~clL-rsL~rLDlSNN~i-s~Lp~sL--gnl-hL~~L~leGNP-lrTiRr~ii~~gT~~vLKyLrs  330 (565)
T KOG0472|consen  258 DLRDNK-LKEVPDEICLL-RSLERLDLSNNDI-SSLPYSL--GNL-HLKFLALEGNP-LRTIRREIISKGTQEVLKYLRS  330 (565)
T ss_pred             eccccc-cccCchHHHHh-hhhhhhcccCCcc-ccCCccc--ccc-eeeehhhcCCc-hHHHHHHHHcccHHHHHHHHHH
Confidence            777654 45788888766 8899999988763 4444444  556 89999999985 2221111000 01111112221


Q ss_pred             ee----cccCcccccc----cccccCC-CcCCCccEEEEeecCCcccccchhHHHhcc--ccceEEEeccccceeeeecc
Q 036269          352 LM----IVDNRNFVEI----CHGQLPA-GCLSNVKRLDVRDCGSVLKILPSHLVQSFQ--NLQRLRVEGCELLVSVFEIE  420 (623)
Q Consensus       352 L~----l~~~~~l~~~----~~~~~~~-~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~--~L~~L~l~~c~~l~~i~~~~  420 (623)
                      =.    ++.-..-+.-    ....+|. ..+.+.+.|++++ ..++. +|...+..-.  -....++++ +++.+++..=
T Consensus       331 ~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~-~qlt~-VPdEVfea~~~~~Vt~Vnfsk-NqL~elPk~L  407 (565)
T KOG0472|consen  331 KIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSD-KQLTL-VPDEVFEAAKSEIVTSVNFSK-NQLCELPKRL  407 (565)
T ss_pred             hhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccc-ccccc-CCHHHHHHhhhcceEEEeccc-chHhhhhhhh
Confidence            00    0000000000    0001111 1345567777776 66665 5655322211  245556666 5555441000


Q ss_pred             ---------------ceeccccccccccCccEEecCCccchhhcccCCCcccccCCccEEEEEcCCCcceeccCcccCcc
Q 036269          421 ---------------RVNIAKEETELFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFCDELRQVFPANLGKKA  485 (623)
Q Consensus       421 ---------------~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~L~~L~l~~C~~l~~~~~~~l~~~~  485 (623)
                                     -...++..+..+++|..|+++++ -+-++   |...+.+..|+.|+|+. +.+..+ |..+-...
T Consensus       408 ~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN-~Ln~L---P~e~~~lv~Lq~LnlS~-NrFr~l-P~~~y~lq  481 (565)
T KOG0472|consen  408 VELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNN-LLNDL---PEEMGSLVRLQTLNLSF-NRFRML-PECLYELQ  481 (565)
T ss_pred             HHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccc-hhhhc---chhhhhhhhhheecccc-cccccc-hHHHhhHH
Confidence                           00111445567778888888777 35555   55556677788888877 565554 55555555


Q ss_pred             cchhhhhhcccccccceeccccCCCCCCCCCCccEEEEecCCCcceecchhhhhccCCCCEEEEccCC
Q 036269          486 AAEEMVLYRNRRDQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSRCP  553 (623)
Q Consensus       486 ~L~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~  553 (623)
                      .+|.+.+.+++       +....+.++..+.+|..|++.+ +.+..+||.  ++++++|++|.++|+|
T Consensus       482 ~lEtllas~nq-------i~~vd~~~l~nm~nL~tLDL~n-Ndlq~IPp~--LgnmtnL~hLeL~gNp  539 (565)
T KOG0472|consen  482 TLETLLASNNQ-------IGSVDPSGLKNMRNLTTLDLQN-NDLQQIPPI--LGNMTNLRHLELDGNP  539 (565)
T ss_pred             HHHHHHhcccc-------ccccChHHhhhhhhcceeccCC-CchhhCChh--hccccceeEEEecCCc
Confidence            66666666553       3444566788889999999988 788888876  8899999999999988

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.94  E-value=2e-27  Score=231.15  Aligned_cols=387  Identities=19%  Similarity=0.205  Sum_probs=251.0

Q ss_pred             CCCcEEEcccCCcccccccC----CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCc
Q 036269           36 EDLTGISLMFNDIHEVHEGL----QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLR  111 (623)
Q Consensus        36 ~~l~~L~l~~~~~~~l~~~~----~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~  111 (623)
                      -..+.++.+++.+..+....    -.+..++|++++|.+.++...+|.++++|+.+++..|.+   +.+|.......+|+
T Consensus        52 c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~L---t~IP~f~~~sghl~  128 (873)
T KOG4194|consen   52 CNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNEL---TRIPRFGHESGHLE  128 (873)
T ss_pred             CCceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchh---hhccccccccccee
Confidence            44567888888887653221    224567899999999988888899999999999999999   88998777778899


Q ss_pred             EEeccCCcCCCCc--ccccCCcCCcEEEcCCCCCcccc-ccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecc
Q 036269          112 TLSLHDCQHFGDL--SLIGELSLLEILDLSESDVSEIP-VSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSK  188 (623)
Q Consensus       112 ~L~l~~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~  188 (623)
                      .|++.+|. +.++  +.+..++.||.|||+.|.|+.+| ..+.+-.++++|++++ +.++.+..+.+..+.+|-+|.++.
T Consensus       129 ~L~L~~N~-I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~-N~It~l~~~~F~~lnsL~tlkLsr  206 (873)
T KOG4194|consen  129 KLDLRHNL-ISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLAS-NRITTLETGHFDSLNSLLTLKLSR  206 (873)
T ss_pred             EEeeeccc-cccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecc-ccccccccccccccchheeeeccc
Confidence            99999998 8888  78899999999999999999887 4677778999999999 778888877789999999999999


Q ss_pred             cccccccccccccccccccccccCCCCccEEEeecCCCccCCCc--ccccCccEEEEEeCCCCCCCcchhhhhhhhcccc
Q 036269          189 TFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSD--MSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKK  266 (623)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  266 (623)
                      |.++           ..-+..+.++++|+.|++..|.++.+...  .++++|+.+.+..++.....+             
T Consensus       207 Nrit-----------tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~D-------------  262 (873)
T KOG4194|consen  207 NRIT-----------TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDD-------------  262 (873)
T ss_pred             Cccc-----------ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccC-------------
Confidence            9883           22344566799999999999887655333  667777777776665332221             


Q ss_pred             cccceeeeccccccccchHHHHHHHhhceeEeecccCCcccccccccccCccCccEEEEecccCceeecccccccccccc
Q 036269          267 RCSRAMGLSQDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTL  346 (623)
Q Consensus       267 ~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~  346 (623)
                                         +.+.-+.++++|+++.+... .+...+. .++..|+.|+++.+ .+..+..+    .....
T Consensus       263 -------------------G~Fy~l~kme~l~L~~N~l~-~vn~g~l-fgLt~L~~L~lS~N-aI~rih~d----~Wsft  316 (873)
T KOG4194|consen  263 -------------------GAFYGLEKMEHLNLETNRLQ-AVNEGWL-FGLTSLEQLDLSYN-AIQRIHID----SWSFT  316 (873)
T ss_pred             -------------------cceeeecccceeecccchhh-hhhcccc-cccchhhhhccchh-hhheeecc----hhhhc
Confidence                               11111256666666655421 1111111 34566666666666 34433222    33445


Q ss_pred             cccceeecccCcccccccccccCCCcCCCccEEEEeecCCcccccchhHHHhccccceEEEeccccceeeeeccceeccc
Q 036269          347 LKLEWLMIVDNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEIERVNIAK  426 (623)
Q Consensus       347 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~  426 (623)
                      ++|++|+++++. ++.+..+.+  ..+..|++|.++. +.++. +....+..+++|+.|++++ +.+.-.++. +    .
T Consensus       317 qkL~~LdLs~N~-i~~l~~~sf--~~L~~Le~LnLs~-Nsi~~-l~e~af~~lssL~~LdLr~-N~ls~~IED-a----a  385 (873)
T KOG4194|consen  317 QKLKELDLSSNR-ITRLDEGSF--RVLSQLEELNLSH-NSIDH-LAEGAFVGLSSLHKLDLRS-NELSWCIED-A----A  385 (873)
T ss_pred             ccceeEeccccc-cccCChhHH--HHHHHhhhhcccc-cchHH-HHhhHHHHhhhhhhhcCcC-CeEEEEEec-c----h
Confidence            566666666654 333211111  2345566666665 44443 4444455566666666666 555433222 1    2


Q ss_pred             cccccccCccEEecCCccchhhcccCCCcccccCCccEEEEEcCCCcceeccCcccCcccchhhhhh
Q 036269          427 EETELFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFCDELRQVFPANLGKKAAAEEMVLY  493 (623)
Q Consensus       427 ~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~L~~L~l~~C~~l~~~~~~~l~~~~~L~~l~~~  493 (623)
                      ..+..+++|+.|++.++ +++.|.+..  +..+++|++|++.+ +-+.++=|..+..+ .|++|.+.
T Consensus       386 ~~f~gl~~LrkL~l~gN-qlk~I~krA--fsgl~~LE~LdL~~-NaiaSIq~nAFe~m-~Lk~Lv~n  447 (873)
T KOG4194|consen  386 VAFNGLPSLRKLRLTGN-QLKSIPKRA--FSGLEALEHLDLGD-NAIASIQPNAFEPM-ELKELVMN  447 (873)
T ss_pred             hhhccchhhhheeecCc-eeeecchhh--hccCcccceecCCC-Ccceeecccccccc-hhhhhhhc
Confidence            23334666666666666 555553332  23456666666665 45555544444444 55555443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.92  E-value=1.2e-28  Score=229.32  Aligned_cols=264  Identities=24%  Similarity=0.315  Sum_probs=195.2

Q ss_pred             CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCCcCCCCc-ccccCCcCCc
Q 036269           56 QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDL-SLIGELSLLE  134 (623)
Q Consensus        56 ~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~i-~~~~~l~~L~  134 (623)
                      .-..++.+++++|.+..+...+ .++..|.+|++++|..   .++|++++.+..++.++.+.+. +..+ +.++.+..|+
T Consensus        43 ~qv~l~~lils~N~l~~l~~dl-~nL~~l~vl~~~~n~l---~~lp~aig~l~~l~~l~vs~n~-ls~lp~~i~s~~~l~  117 (565)
T KOG0472|consen   43 EQVDLQKLILSHNDLEVLREDL-KNLACLTVLNVHDNKL---SQLPAAIGELEALKSLNVSHNK-LSELPEQIGSLISLV  117 (565)
T ss_pred             hhcchhhhhhccCchhhccHhh-hcccceeEEEeccchh---hhCCHHHHHHHHHHHhhcccch-HhhccHHHhhhhhhh
Confidence            3356889999999999777765 8999999999999999   7999999999999999999999 7666 8899999999


Q ss_pred             EEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecccccccccccccccccccccccccCCC
Q 036269          135 ILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALS  214 (623)
Q Consensus       135 ~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~  214 (623)
                      .++.+.|.+.++|++++.+..|..++..+ +.+..+|.+ +..+.++..+++.+|++            .+.+...-.|+
T Consensus       118 ~l~~s~n~~~el~~~i~~~~~l~dl~~~~-N~i~slp~~-~~~~~~l~~l~~~~n~l------------~~l~~~~i~m~  183 (565)
T KOG0472|consen  118 KLDCSSNELKELPDSIGRLLDLEDLDATN-NQISSLPED-MVNLSKLSKLDLEGNKL------------KALPENHIAMK  183 (565)
T ss_pred             hhhccccceeecCchHHHHhhhhhhhccc-cccccCchH-HHHHHHHHHhhccccch------------hhCCHHHHHHH
Confidence            99999999999999999999999999888 778889988 88999999999999987            35555555599


Q ss_pred             CccEEEeecCCCccCCCc-ccccCccEEEEEeCCCCCCCcchhhhhhhhcccccccceeeeccccccccchHHHHHHHhh
Q 036269          215 RLTSLHIDIPEGEIMPSD-MSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLR  293 (623)
Q Consensus       215 ~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~  293 (623)
                      .|++++...|.++.+|+. +.+.+|.-|++..++....|                             .+|.+     ..
T Consensus       184 ~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-----------------------------ef~gc-----s~  229 (565)
T KOG0472|consen  184 RLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLP-----------------------------EFPGC-----SL  229 (565)
T ss_pred             HHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCC-----------------------------CCCcc-----HH
Confidence            999999999999999988 88899999998888765444                             11111     34


Q ss_pred             ceeEeecccCCcccccccccccCccCccEEEEecccCceeecccccccccccccccceeecccCcccccccccccCCCcC
Q 036269          294 SEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLLKLEWLMIVDNRNFVEICHGQLPAGCL  373 (623)
Q Consensus       294 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~  373 (623)
                      |++++++.+. +.. ++.--...++++..|++..+ ++++++++     ...+.+|+.|+++++. ++.+.   ...+.+
T Consensus       230 L~Elh~g~N~-i~~-lpae~~~~L~~l~vLDLRdN-klke~Pde-----~clLrsL~rLDlSNN~-is~Lp---~sLgnl  297 (565)
T KOG0472|consen  230 LKELHVGENQ-IEM-LPAEHLKHLNSLLVLDLRDN-KLKEVPDE-----ICLLRSLERLDLSNND-ISSLP---YSLGNL  297 (565)
T ss_pred             HHHHHhcccH-HHh-hHHHHhcccccceeeecccc-ccccCchH-----HHHhhhhhhhcccCCc-cccCC---cccccc
Confidence            4444444333 111 11111134566666666666 56666552     3345566666666654 22110   112344


Q ss_pred             CCccEEEEeecC
Q 036269          374 SNVKRLDVRDCG  385 (623)
Q Consensus       374 ~~L~~L~l~~c~  385 (623)
                       .|+.|.+.++|
T Consensus       298 -hL~~L~leGNP  308 (565)
T KOG0472|consen  298 -HLKFLALEGNP  308 (565)
T ss_pred             -eeeehhhcCCc
Confidence             56666666544

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.92  E-value=7.1e-26  Score=220.40  Aligned_cols=345  Identities=17%  Similarity=0.218  Sum_probs=215.1

Q ss_pred             CCCcEEEcccCCccccccc--CCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEE
Q 036269           36 EDLTGISLMFNDIHEVHEG--LQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTL  113 (623)
Q Consensus        36 ~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L  113 (623)
                      +..+.|+++.|.+.++-..  .++++|+.+.+..|.++.+|... ....+|+.|+|.+|.+.  .--..++.-++.||+|
T Consensus        78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~-~~sghl~~L~L~~N~I~--sv~se~L~~l~alrsl  154 (873)
T KOG4194|consen   78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFG-HESGHLEKLDLRHNLIS--SVTSEELSALPALRSL  154 (873)
T ss_pred             cceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhccccc-ccccceeEEeeeccccc--cccHHHHHhHhhhhhh
Confidence            5677899999998776544  28899999999999999888732 44566999999999884  2233557788899999


Q ss_pred             eccCCcCCCCc--ccccCCcCCcEEEcCCCCCcccc-ccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecccc
Q 036269          114 SLHDCQHFGDL--SLIGELSLLEILDLSESDVSEIP-VSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTF  190 (623)
Q Consensus       114 ~l~~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~  190 (623)
                      |++.|. +..+  +.+..-.++++|+|++|.|+.+. ..|..+.+|-.|.++. +.++.+|..++.++++|+.|++..|.
T Consensus       155 DLSrN~-is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr-NrittLp~r~Fk~L~~L~~LdLnrN~  232 (873)
T KOG4194|consen  155 DLSRNL-ISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR-NRITTLPQRSFKRLPKLESLDLNRNR  232 (873)
T ss_pred             hhhhch-hhcccCCCCCCCCCceEEeeccccccccccccccccchheeeeccc-CcccccCHHHhhhcchhhhhhccccc
Confidence            999998 8777  56777788999999999998664 4677888999999998 77888998878889999999998887


Q ss_pred             cccccccccccccccccccccCCCCccEEEeecCCCccCCCc--ccccCccEEEEEeCCCCCCCcchhhhhhhhcccccc
Q 036269          191 CHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSD--MSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRC  268 (623)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~  268 (623)
                      +.           ...-..++.+++|+.|.+..|++..+.+.  ..+.+++++++..+.......+.+-       ....
T Consensus       233 ir-----------ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lf-------gLt~  294 (873)
T KOG4194|consen  233 IR-----------IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLF-------GLTS  294 (873)
T ss_pred             ee-----------eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccc-------ccch
Confidence            73           12234577888888888888888777776  6778888888887764332211111       2233


Q ss_pred             cceeeeccccccc-cchHHHHHHHhhceeEeecccCCcccccccccccCccCccEEEEecccCceeeccccccccccccc
Q 036269          269 SRAMGLSQDMRIS-ALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLL  347 (623)
Q Consensus       269 l~~l~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~  347 (623)
                      ++.++++.+..-. ....|-+  .++|++|+++++....  ++.-.+..+..|++|.++++ ++..+.+.    ....+.
T Consensus       295 L~~L~lS~NaI~rih~d~Wsf--tqkL~~LdLs~N~i~~--l~~~sf~~L~~Le~LnLs~N-si~~l~e~----af~~ls  365 (873)
T KOG4194|consen  295 LEQLDLSYNAIQRIHIDSWSF--TQKLKELDLSSNRITR--LDEGSFRVLSQLEELNLSHN-SIDHLAEG----AFVGLS  365 (873)
T ss_pred             hhhhccchhhhheeecchhhh--cccceeEecccccccc--CChhHHHHHHHhhhhccccc-chHHHHhh----HHHHhh
Confidence            3333333322110 1222221  1455555555444211  11111123445555555555 34433322    333455


Q ss_pred             ccceeecccCcccccc-cccccCCCcCCCccEEEEeecCCcccccchhHHHhccccceEEEeccccceee
Q 036269          348 KLEWLMIVDNRNFVEI-CHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSV  416 (623)
Q Consensus       348 ~L~~L~l~~~~~l~~~-~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i  416 (623)
                      +|++|+++++. +... -.+..+...++.|++|.+.+ ++++. +|...+.++++|++|++.+ +.|.++
T Consensus       366 sL~~LdLr~N~-ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~-I~krAfsgl~~LE~LdL~~-NaiaSI  431 (873)
T KOG4194|consen  366 SLHKLDLRSNE-LSWCIEDAAVAFNGLPSLRKLRLTG-NQLKS-IPKRAFSGLEALEHLDLGD-NAIASI  431 (873)
T ss_pred             hhhhhcCcCCe-EEEEEecchhhhccchhhhheeecC-ceeee-cchhhhccCcccceecCCC-Ccceee
Confidence            55555555544 1111 11112222355555555555 45544 4444455555555555555 555544

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.91  E-value=1e-25  Score=230.94  Aligned_cols=470  Identities=21%  Similarity=0.241  Sum_probs=291.4

Q ss_pred             EEEcccCCcccccccC-CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCC
Q 036269           40 GISLMFNDIHEVHEGL-QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDC  118 (623)
Q Consensus        40 ~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~  118 (623)
                      +++++.+.++.||..+ .-..++.|++..|.+...|-.+..+.-+|+.|++++|.+   ..+|..+..+++|+.|.++.|
T Consensus         2 ~vd~s~~~l~~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~---~~fp~~it~l~~L~~ln~s~n   78 (1081)
T KOG0618|consen    2 HVDASDEQLELIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQI---SSFPIQITLLSHLRQLNLSRN   78 (1081)
T ss_pred             CcccccccCcccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeecccccc---ccCCchhhhHHHHhhcccchh
Confidence            4677888888888877 445589999999998876666667777799999999999   889999999999999999999


Q ss_pred             cCCCCc-ccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccccccccccc
Q 036269          119 QHFGDL-SLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFEN  197 (623)
Q Consensus       119 ~~l~~i-~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~  197 (623)
                      . ++.+ ...+++.+|++|+|.+|.++.+|.++..+.+|++|++++ +....+|.- +..+..++.+.+++|..      
T Consensus        79 ~-i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~-N~f~~~Pl~-i~~lt~~~~~~~s~N~~------  149 (1081)
T KOG0618|consen   79 Y-IRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSF-NHFGPIPLV-IEVLTAEEELAASNNEK------  149 (1081)
T ss_pred             h-HhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccch-hccCCCchh-HHhhhHHHHHhhhcchh------
Confidence            8 8766 678899999999999999999999999999999999999 566678875 78888888888888721      


Q ss_pred             ccccccccccccccCCCCccEEEeecCCC-ccCCCc-ccccCccEEEEEeCCCCCCCcchhhhhhhhcccccccceeeec
Q 036269          198 EDDSRSNAKFIELGALSRLTSLHIDIPEG-EIMPSD-MSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSRAMGLS  275 (623)
Q Consensus       198 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~  275 (623)
                               ...++... ++.+++..+.+ ..++.+ ..+..  .+++.++...                     .+++ 
T Consensus       150 ---------~~~lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~---------------------~~dl-  195 (1081)
T KOG0618|consen  150 ---------IQRLGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME---------------------VLDL-  195 (1081)
T ss_pred             ---------hhhhcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh---------------------hhhh-
Confidence                     11222222 55555554442 222222 22222  2444333211                     0000 


Q ss_pred             cccccccchHHHHHHHhhceeEeecccCCcccccccccccCccCccEEEEecccCceeecccccccccccccccceeecc
Q 036269          276 QDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLLKLEWLMIV  355 (623)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~  355 (623)
                                   ..+++|+.+....+.. ..    +. ..-++++.|+.+.|+-.+..       ......+|+.++++
T Consensus       196 -------------s~~~~l~~l~c~rn~l-s~----l~-~~g~~l~~L~a~~n~l~~~~-------~~p~p~nl~~~dis  249 (1081)
T KOG0618|consen  196 -------------SNLANLEVLHCERNQL-SE----LE-ISGPSLTALYADHNPLTTLD-------VHPVPLNLQYLDIS  249 (1081)
T ss_pred             -------------hhccchhhhhhhhccc-ce----EE-ecCcchheeeeccCcceeec-------cccccccceeeecc
Confidence                         0012333333222111 00    00 12245666666665322111       11112345556655


Q ss_pred             cCcccccccccccCCCcCCCccEEEEeecCCcccccchhHHHhccccceEEEeccccceeeeeccceeccccccccccCc
Q 036269          356 DNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEIERVNIAKEETELFSSL  435 (623)
Q Consensus       356 ~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L  435 (623)
                      .+. ++.+. .+  .+.+++|+.+.+.. +.+.. +|.. +....+|++|.+.. +.++++         +.....+.+|
T Consensus       250 ~n~-l~~lp-~w--i~~~~nle~l~~n~-N~l~~-lp~r-i~~~~~L~~l~~~~-nel~yi---------p~~le~~~sL  312 (1081)
T KOG0618|consen  250 HNN-LSNLP-EW--IGACANLEALNANH-NRLVA-LPLR-ISRITSLVSLSAAY-NELEYI---------PPFLEGLKSL  312 (1081)
T ss_pred             hhh-hhcch-HH--HHhcccceEecccc-hhHHh-hHHH-HhhhhhHHHHHhhh-hhhhhC---------CCccccccee
Confidence            543 22211 11  12455666666655 34433 4444 45556666666666 555555         4444446666


Q ss_pred             cEEecCCccchhhcccCCCcccccC-CccEEEEEcCCCcceeccCcccCcccchhhhhhcccccccceeccccCCCCCCC
Q 036269          436 EKLTLIGLPRMTDIWKGDTQFVSLH-DLKKIRVVFCDELRQVFPANLGKKAAAEEMVLYRNRRDQIHIHATTSTSSPTPS  514 (623)
Q Consensus       436 ~~L~l~~c~~l~~i~~~~~~~~~l~-~L~~L~l~~C~~l~~~~~~~l~~~~~L~~l~~~~~~~~~l~~~~~~~~~~~~~~  514 (623)
                      ++|++..+ +|.++++..  +.... +|..|..+. .++...+-..-.....|+.|++.+|       .+.+..-+.+..
T Consensus       313 ~tLdL~~N-~L~~lp~~~--l~v~~~~l~~ln~s~-n~l~~lp~~~e~~~~~Lq~LylanN-------~Ltd~c~p~l~~  381 (1081)
T KOG0618|consen  313 RTLDLQSN-NLPSLPDNF--LAVLNASLNTLNVSS-NKLSTLPSYEENNHAALQELYLANN-------HLTDSCFPVLVN  381 (1081)
T ss_pred             eeeeehhc-cccccchHH--HhhhhHHHHHHhhhh-ccccccccccchhhHHHHHHHHhcC-------cccccchhhhcc
Confidence            66666666 455442211  11111 134444432 4444443222233667778888776       334444456789


Q ss_pred             CCCccEEEEecCCCcceecchhhhhccCCCCEEEEccCCchhhhhc-------------CCCCcccCcCCCcceeecCcc
Q 036269          515 LGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSRCPTLQEIIM-------------NDEGEVGLQGASTEKITFPSL  581 (623)
Q Consensus       515 l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~-------------~~~~~~~~~~~~~~~~~l~~L  581 (623)
                      +.+||.|++++ ++|.++ |...+.++..||+|+++|+. ++.++.             ..+.+..+|    ....++.|
T Consensus       382 ~~hLKVLhLsy-NrL~~f-pas~~~kle~LeeL~LSGNk-L~~Lp~tva~~~~L~tL~ahsN~l~~fP----e~~~l~qL  454 (1081)
T KOG0618|consen  382 FKHLKVLHLSY-NRLNSF-PASKLRKLEELEELNLSGNK-LTTLPDTVANLGRLHTLRAHSNQLLSFP----ELAQLPQL  454 (1081)
T ss_pred             ccceeeeeecc-cccccC-CHHHHhchHHhHHHhcccch-hhhhhHHHHhhhhhHHHhhcCCceeech----hhhhcCcc
Confidence            99999999999 788886 55678999999999999987 666653             222333443    45667788


Q ss_pred             cceecccCcccceecCCCCcceeecCCccEEEeccCCCC
Q 036269          582 FSIQLCLLDSLTCFCSSGSHATVEFLALEALQIIDCPGM  620 (623)
Q Consensus       582 ~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~~l  620 (623)
                      +.++++ |.+|+.+-. ..  ...+|.||+|+++|.+.+
T Consensus       455 ~~lDlS-~N~L~~~~l-~~--~~p~p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  455 KVLDLS-CNNLSEVTL-PE--ALPSPNLKYLDLSGNTRL  489 (1081)
T ss_pred             eEEecc-cchhhhhhh-hh--hCCCcccceeeccCCccc
Confidence            888886 567776644 22  223589999999998754

>PLN03210 Resistant to P

Probab=99.91  E-value=4.3e-23  Score=236.11  Aligned_cols=319  Identities=24%  Similarity=0.353  Sum_probs=198.1

Q ss_pred             CcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCCcCCCCcccccCCcCCcEEEc
Q 036269           59 RLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDL  138 (623)
Q Consensus        59 ~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~i~~~~~l~~L~~L~l  138 (623)
                      +||.|.+.++.+..+|..+  ...+|++|++.++.+   ..+|..+..+++|++|+++++..++.++.++.+++|++|++
T Consensus       590 ~Lr~L~~~~~~l~~lP~~f--~~~~L~~L~L~~s~l---~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L  664 (1153)
T PLN03210        590 KLRLLRWDKYPLRCMPSNF--RPENLVKLQMQGSKL---EKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKL  664 (1153)
T ss_pred             ccEEEEecCCCCCCCCCcC--CccCCcEEECcCccc---cccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEe
Confidence            4666666666666666543  456666666666666   55666666666666666666654555555666666666666


Q ss_pred             CCC-CCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecccccccccccccccccccccccccCCCCcc
Q 036269          139 SES-DVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLT  217 (623)
Q Consensus       139 ~~~-~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~  217 (623)
                      ++| .+..+|..++++++|+.|++++|+.++.+|.. + ++++|+.|++++|...           ...+.   ...+|+
T Consensus       665 ~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~Lsgc~~L-----------~~~p~---~~~nL~  728 (1153)
T PLN03210        665 SDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLNLSGCSRL-----------KSFPD---ISTNIS  728 (1153)
T ss_pred             cCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEeCCCCCCc-----------ccccc---ccCCcC
Confidence            665 34466666666666666666666666666653 2 5666666666665431           11111   124566


Q ss_pred             EEEeecCCCccCCCcccccCccEEEEEeCCCCCCCcchhhhhhhhcccccccceeeeccccccccchHHHHHHHhhceeE
Q 036269          218 SLHIDIPEGEIMPSDMSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEIL  297 (623)
Q Consensus       218 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L  297 (623)
                      .|+++++.+..+|....+++|.+|.+..+......                         +....++......+++|+.|
T Consensus       729 ~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~-------------------------~~~~~l~~~~~~~~~sL~~L  783 (1153)
T PLN03210        729 WLDLDETAIEEFPSNLRLENLDELILCEMKSEKLW-------------------------ERVQPLTPLMTMLSPSLTRL  783 (1153)
T ss_pred             eeecCCCccccccccccccccccccccccchhhcc-------------------------ccccccchhhhhccccchhe
Confidence            66666666666655544555665555432211000                         00001112222223678888


Q ss_pred             eecccCCcccccccccccCccCccEEEEecccCceeecccccccccccccccceeecccCcccccccccccCCCcCCCcc
Q 036269          298 ALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLLKLEWLMIVDNRNFVEICHGQLPAGCLSNVK  377 (623)
Q Consensus       298 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~  377 (623)
                      ++++|..+..++..+  ..+++|+.|++++|..++.++..      ..+++|+.|++++|..+..+     | ...++|+
T Consensus       784 ~Ls~n~~l~~lP~si--~~L~~L~~L~Ls~C~~L~~LP~~------~~L~sL~~L~Ls~c~~L~~~-----p-~~~~nL~  849 (1153)
T PLN03210        784 FLSDIPSLVELPSSI--QNLHKLEHLEIENCINLETLPTG------INLESLESLDLSGCSRLRTF-----P-DISTNIS  849 (1153)
T ss_pred             eCCCCCCccccChhh--hCCCCCCEEECCCCCCcCeeCCC------CCccccCEEECCCCCccccc-----c-ccccccC
Confidence            888887766655444  56788888888888777776642      24778888888888765433     2 1236788


Q ss_pred             EEEEeecCCcccccchhHHHhccccceEEEeccccceeeeeccceeccccccccccCccEEecCCccchhhc
Q 036269          378 RLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEIERVNIAKEETELFSSLEKLTLIGLPRMTDI  449 (623)
Q Consensus       378 ~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i  449 (623)
                      .|++++ +.++. +|.. +..+++|+.|++++|++++.+         +.....+++|+.+++++|++++.+
T Consensus       850 ~L~Ls~-n~i~~-iP~s-i~~l~~L~~L~L~~C~~L~~l---------~~~~~~L~~L~~L~l~~C~~L~~~  909 (1153)
T PLN03210        850 DLNLSR-TGIEE-VPWW-IEKFSNLSFLDMNGCNNLQRV---------SLNISKLKHLETVDFSDCGALTEA  909 (1153)
T ss_pred             EeECCC-CCCcc-ChHH-HhcCCCCCEEECCCCCCcCcc---------CcccccccCCCeeecCCCcccccc
Confidence            888887 45654 5654 778888888888888888876         445566788888888888888754

syringae 6; Provisional

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.91  E-value=3.7e-26  Score=223.96  Aligned_cols=359  Identities=19%  Similarity=0.301  Sum_probs=283.0

Q ss_pred             CCCCCCCcEEEcccCCcccccccC-CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccC
Q 036269           32 INTFEDLTGISLMFNDIHEVHEGL-QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINL  110 (623)
Q Consensus        32 ~~~~~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L  110 (623)
                      +..+.+++.|.+...++..+|... .+.+|++|.+++|.++.+...+ +.++.||.+++..|++.. ..+|..+.++..|
T Consensus        28 v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGEL-s~Lp~LRsv~~R~N~LKn-sGiP~diF~l~dL  105 (1255)
T KOG0444|consen   28 VEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGEL-SDLPRLRSVIVRDNNLKN-SGIPTDIFRLKDL  105 (1255)
T ss_pred             HHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhh-ccchhhHHHhhhcccccc-CCCCchhcccccc
Confidence            366788999999999999999888 8899999999999998887775 899999999999998854 5689889999999


Q ss_pred             cEEeccCCcCCCCc-ccccCCcCCcEEEcCCCCCcccccc-ccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecc
Q 036269          111 RTLSLHDCQHFGDL-SLIGELSLLEILDLSESDVSEIPVS-FGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSK  188 (623)
Q Consensus       111 ~~L~l~~~~~l~~i-~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~  188 (623)
                      .+||+++|. ++.. ..+.+.+++-+|++++|.|.++|.. +-+++.|-+|++++ +.+..+|+. +.++.+|++|.+++
T Consensus       106 t~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ-~RRL~~LqtL~Ls~  182 (1255)
T KOG0444|consen  106 TILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN-NRLEMLPPQ-IRRLSMLQTLKLSN  182 (1255)
T ss_pred             eeeecchhh-hhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc-chhhhcCHH-HHHHhhhhhhhcCC
Confidence            999999999 8776 6788999999999999999999965 45889999999999 788999998 89999999999999


Q ss_pred             cccccccccccccccccccccccCCCCccEEEeecCC--CccCCCc-ccccCccEEEEEeCCCCCCCcchhhhhhhhccc
Q 036269          189 TFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPE--GEIMPSD-MSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFK  265 (623)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  265 (623)
                      |.+.           -.....+..|++|+.|++++.+  +.++|.. ..+.+|..++++.+...                
T Consensus       183 NPL~-----------hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp----------------  235 (1255)
T KOG0444|consen  183 NPLN-----------HFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP----------------  235 (1255)
T ss_pred             Chhh-----------HHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC----------------
Confidence            8762           3455667778888888888875  5677766 67778888887765421                


Q ss_pred             ccccceeeeccccccccchHHHHHHHhhceeEeecccCCcccccccccccCccCccEEEEecccCceeeccccccccccc
Q 036269          266 KRCSRAMGLSQDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVT  345 (623)
Q Consensus       266 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~  345 (623)
                                      .+|.++..+ ++|+.|+++++.. +......  ....+|++|+++.+ .++.+++     ....
T Consensus       236 ----------------~vPecly~l-~~LrrLNLS~N~i-teL~~~~--~~W~~lEtLNlSrN-QLt~LP~-----avcK  289 (1255)
T KOG0444|consen  236 ----------------IVPECLYKL-RNLRRLNLSGNKI-TELNMTE--GEWENLETLNLSRN-QLTVLPD-----AVCK  289 (1255)
T ss_pred             ----------------cchHHHhhh-hhhheeccCcCce-eeeeccH--HHHhhhhhhccccc-hhccchH-----HHhh
Confidence                            667777777 8999999998874 2222222  34578999999999 6777766     5667


Q ss_pred             ccccceeecccCcccccccccccCC--CcCCCccEEEEeecCCcccccchhHHHhccccceEEEeccccceeeeecccee
Q 036269          346 LLKLEWLMIVDNRNFVEICHGQLPA--GCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEIERVN  423 (623)
Q Consensus       346 ~~~L~~L~l~~~~~l~~~~~~~~~~--~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~  423 (623)
                      +++|+.|.+.++. ++   +..+|.  |.+..|+.+...+ +.+. .+|.+ +..|..|+.|.++. +.+-++       
T Consensus       290 L~kL~kLy~n~Nk-L~---FeGiPSGIGKL~~Levf~aan-N~LE-lVPEg-lcRC~kL~kL~L~~-NrLiTL-------  354 (1255)
T KOG0444|consen  290 LTKLTKLYANNNK-LT---FEGIPSGIGKLIQLEVFHAAN-NKLE-LVPEG-LCRCVKLQKLKLDH-NRLITL-------  354 (1255)
T ss_pred             hHHHHHHHhccCc-cc---ccCCccchhhhhhhHHHHhhc-cccc-cCchh-hhhhHHHHHhcccc-cceeec-------
Confidence            8889998888775 33   233443  4778888888887 5665 36766 89999999999988 777776       


Q ss_pred             ccccccccccCccEEecCCccchhhcccCCCcccccCCccEEEEE
Q 036269          424 IAKEETELFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVV  468 (623)
Q Consensus       424 ~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~L~~L~l~  468 (623)
                        |+.++-++-|+.|+++.++++.- +..|.  ..-++|+.-.|+
T Consensus       355 --PeaIHlL~~l~vLDlreNpnLVM-PPKP~--da~~~lefYNID  394 (1255)
T KOG0444|consen  355 --PEAIHLLPDLKVLDLRENPNLVM-PPKPN--DARKKLEFYNID  394 (1255)
T ss_pred             --hhhhhhcCCcceeeccCCcCccC-CCCcc--hhhhcceeeecc
Confidence              88889999999999999999864 33332  222455555544

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.90  E-value=1.1e-25  Score=220.70  Aligned_cols=369  Identities=18%  Similarity=0.247  Sum_probs=258.0

Q ss_pred             ccccCcEEeccCCcCCC-C-c-ccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCc
Q 036269          106 FLINLRTLSLHDCQHFG-D-L-SLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLE  182 (623)
Q Consensus       106 ~l~~L~~L~l~~~~~l~-~-i-~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~  182 (623)
                      -++..|-.|+++|. ++ + + .....+..++-|.+..+.+..+|++++.+.+|++|.+.. +.+..+-.+ +..++.|+
T Consensus         5 VLpFVrGvDfsgND-Fsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~H-N~L~~vhGE-Ls~Lp~LR   81 (1255)
T KOG0444|consen    5 VLPFVRGVDFSGND-FSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAH-NQLISVHGE-LSDLPRLR   81 (1255)
T ss_pred             ccceeecccccCCc-CCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhh-hhhHhhhhh-hccchhhH
Confidence            34556667777777 42 2 2 556677777777777777777777777777777777777 344444444 66677777


Q ss_pred             EEEecccccccccccccccccccccccccCCCCccEEEeecCCCccCCCc-ccccCccEEEEEeCCCCCCCcchhhhhhh
Q 036269          183 ELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSD-MSFQNLTSFSITIGGPEEVPLSDFIEVFS  261 (623)
Q Consensus       183 ~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  261 (623)
                      .+.+..|.+.          ...+|..+.++..|..|++++|.+.++|.. ..-+++..|+++++...            
T Consensus        82 sv~~R~N~LK----------nsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Ie------------  139 (1255)
T KOG0444|consen   82 SVIVRDNNLK----------NSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIE------------  139 (1255)
T ss_pred             HHhhhccccc----------cCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccc------------
Confidence            7777766652          345677777777777788887777777766 55566666777665433            


Q ss_pred             hcccccccceeeeccccccccchHHHHHHHhhceeEeecccCCcccccccccccCccCccEEEEecccCceeeccccccc
Q 036269          262 RKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERT  341 (623)
Q Consensus       262 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~  341 (623)
                                          .+|..++.-+..|-.|+++.+. +...+|.+  ..+.+|++|.+++++-...-..     
T Consensus       140 --------------------tIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~--RRL~~LqtL~Ls~NPL~hfQLr-----  191 (1255)
T KOG0444|consen  140 --------------------TIPNSLFINLTDLLFLDLSNNR-LEMLPPQI--RRLSMLQTLKLSNNPLNHFQLR-----  191 (1255)
T ss_pred             --------------------cCCchHHHhhHhHhhhccccch-hhhcCHHH--HHHhhhhhhhcCCChhhHHHHh-----
Confidence                                5555555444667778887765 34445544  4577899999999863221000     


Q ss_pred             ccccccccceeecccCcccccccccccCC--CcCCCccEEEEeecCCcccccchhHHHhccccceEEEeccccceeeeec
Q 036269          342 LRVTLLKLEWLMIVDNRNFVEICHGQLPA--GCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEI  419 (623)
Q Consensus       342 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~--~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~  419 (623)
                      ....+.+|++|.+++...-    ...+|.  ..+.+|+.++++. +.+.. +|.. +..+++|+.|++++ ++|+++   
T Consensus       192 QLPsmtsL~vLhms~TqRT----l~N~Ptsld~l~NL~dvDlS~-N~Lp~-vPec-ly~l~~LrrLNLS~-N~iteL---  260 (1255)
T KOG0444|consen  192 QLPSMTSLSVLHMSNTQRT----LDNIPTSLDDLHNLRDVDLSE-NNLPI-VPEC-LYKLRNLRRLNLSG-NKITEL---  260 (1255)
T ss_pred             cCccchhhhhhhcccccch----hhcCCCchhhhhhhhhccccc-cCCCc-chHH-HhhhhhhheeccCc-Cceeee---
Confidence            2333556777777765532    223443  3678899999986 67764 6776 78889999999999 888887   


Q ss_pred             cceeccccccccccCccEEecCCccchhhcccCCCcccccCCccEEEEEcCCCccee-ccCcccCcccchhhhhhccccc
Q 036269          420 ERVNIAKEETELFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFCDELRQV-FPANLGKKAAAEEMVLYRNRRD  498 (623)
Q Consensus       420 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~L~~L~l~~C~~l~~~-~~~~l~~~~~L~~l~~~~~~~~  498 (623)
                            ....+..-+|++|+++.+ .++.+   |.....++.|++|++.+ ++++.- +|..++.+.+|+++...+|.. 
T Consensus       261 ------~~~~~~W~~lEtLNlSrN-QLt~L---P~avcKL~kL~kLy~n~-NkL~FeGiPSGIGKL~~Levf~aanN~L-  328 (1255)
T KOG0444|consen  261 ------NMTEGEWENLETLNLSRN-QLTVL---PDAVCKLTKLTKLYANN-NKLTFEGIPSGIGKLIQLEVFHAANNKL-  328 (1255)
T ss_pred             ------eccHHHHhhhhhhccccc-hhccc---hHHHhhhHHHHHHHhcc-CcccccCCccchhhhhhhHHHHhhcccc-
Confidence                  334455778999999998 67777   66667788999999887 666533 588888899999988887644 


Q ss_pred             ccceeccccCCCCCCCCCCccEEEEecCCCcceecchhhhhccCCCCEEEEccCCchhhhhc
Q 036269          499 QIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSRCPTLQEIIM  560 (623)
Q Consensus       499 ~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~  560 (623)
                             ...|+++..++.|+.|+++. +++-.+|.  .++-++-|+.|++..+|++.--|.
T Consensus       329 -------ElVPEglcRC~kL~kL~L~~-NrLiTLPe--aIHlL~~l~vLDlreNpnLVMPPK  380 (1255)
T KOG0444|consen  329 -------ELVPEGLCRCVKLQKLKLDH-NRLITLPE--AIHLLPDLKVLDLRENPNLVMPPK  380 (1255)
T ss_pred             -------ccCchhhhhhHHHHHhcccc-cceeechh--hhhhcCCcceeeccCCcCccCCCC
Confidence                   45688888999999999966 67777654  478889999999999998765543

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.87  E-value=2.1e-24  Score=221.42  Aligned_cols=445  Identities=20%  Similarity=0.221  Sum_probs=266.9

Q ss_pred             CCCcEEEcccCCcccccccC--CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEE
Q 036269           36 EDLTGISLMFNDIHEVHEGL--QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTL  113 (623)
Q Consensus        36 ~~l~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L  113 (623)
                      ..+.+|+++.|.+-..|-.+  +..+|+.|++++|.+...|..+ ..+.+|+.|+++.|.+   ...|.+..++.+|++|
T Consensus        21 ~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~i-t~l~~L~~ln~s~n~i---~~vp~s~~~~~~l~~l   96 (1081)
T KOG0618|consen   21 EALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQI-TLLSHLRQLNLSRNYI---RSVPSSCSNMRNLQYL   96 (1081)
T ss_pred             HHHHhhhccccccccCchHHhhheeeeEEeeccccccccCCchh-hhHHHHhhcccchhhH---hhCchhhhhhhcchhh
Confidence            33677777777654433211  4555888888888877777665 6778888888888877   6777777788888888


Q ss_pred             eccCCcCCCCc-ccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecccccc
Q 036269          114 SLHDCQHFGDL-SLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCH  192 (623)
Q Consensus       114 ~l~~~~~l~~i-~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~  192 (623)
                      .+.+|. +... ..+..+.+|++|+++.|.+..+|..+..++.+..+..++|..+..++..     . ++++++..+.+.
T Consensus        97 nL~~n~-l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~-----~-ik~~~l~~n~l~  169 (1081)
T KOG0618|consen   97 NLKNNR-LQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQT-----S-IKKLDLRLNVLG  169 (1081)
T ss_pred             eeccch-hhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccc-----c-chhhhhhhhhcc
Confidence            888777 6554 5677788888888888888777777777776666666664233333321     1 334444443331


Q ss_pred             ccccccccccccccccc-------------------ccCCCCccEEEeecCCCccCCCcccccCccEEEEEeCCCCCCCc
Q 036269          193 WQFENEDDSRSNAKFIE-------------------LGALSRLTSLHIDIPEGEIMPSDMSFQNLTSFSITIGGPEEVPL  253 (623)
Q Consensus       193 ~~~~~~~~~~~~~~~~~-------------------l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  253 (623)
                                 +.++.+                   +..+.+|+.++...|.+..+.  ..-++|+.+....+.......
T Consensus       170 -----------~~~~~~i~~l~~~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~--~~g~~l~~L~a~~n~l~~~~~  236 (1081)
T KOG0618|consen  170 -----------GSFLIDIYNLTHQLDLRYNEMEVLDLSNLANLEVLHCERNQLSELE--ISGPSLTALYADHNPLTTLDV  236 (1081)
T ss_pred             -----------cchhcchhhhheeeecccchhhhhhhhhccchhhhhhhhcccceEE--ecCcchheeeeccCcceeecc
Confidence                       222223                   333444444444444332221  122344444444443221110


Q ss_pred             chhhhhhhhcccccccceeeeccccccccchHHHHHHHhhceeEeecccCCcccccccccccCccCccEEEEecccCcee
Q 036269          254 SDFIEVFSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKY  333 (623)
Q Consensus       254 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~  333 (623)
                               ......+..+.+..+.. ..+|.|+... .+|+.++...+.. ...+..+  ....+|+.+.+..| .++.
T Consensus       237 ---------~p~p~nl~~~dis~n~l-~~lp~wi~~~-~nle~l~~n~N~l-~~lp~ri--~~~~~L~~l~~~~n-el~y  301 (1081)
T KOG0618|consen  237 ---------HPVPLNLQYLDISHNNL-SNLPEWIGAC-ANLEALNANHNRL-VALPLRI--SRITSLVSLSAAYN-ELEY  301 (1081)
T ss_pred             ---------ccccccceeeecchhhh-hcchHHHHhc-ccceEecccchhH-HhhHHHH--hhhhhHHHHHhhhh-hhhh
Confidence                     11223345555554433 2667777766 6777777765553 3333333  33556777777666 5655


Q ss_pred             ecccccccccccccccceeecccCcccccccccccCCCcC-CCccEEEEeecCCcccccchhHHHhccccceEEEecccc
Q 036269          334 LLNSLERTLRVTLLKLEWLMIVDNRNFVEICHGQLPAGCL-SNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCEL  412 (623)
Q Consensus       334 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~-~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~  412 (623)
                      ++.     ....+..|++|++..+. +..+....+  ... ..|+.|..+. ..+.. .|...-..++.|+.|++-+ +.
T Consensus       302 ip~-----~le~~~sL~tLdL~~N~-L~~lp~~~l--~v~~~~l~~ln~s~-n~l~~-lp~~~e~~~~~Lq~Lylan-N~  370 (1081)
T KOG0618|consen  302 IPP-----FLEGLKSLRTLDLQSNN-LPSLPDNFL--AVLNASLNTLNVSS-NKLST-LPSYEENNHAALQELYLAN-NH  370 (1081)
T ss_pred             CCC-----cccccceeeeeeehhcc-ccccchHHH--hhhhHHHHHHhhhh-ccccc-cccccchhhHHHHHHHHhc-Cc
Confidence            554     33446677777777654 222111000  011 1244444443 34433 3433345567788888888 77


Q ss_pred             ceeeeeccceeccccccccccCccEEecCCccchhhcccCCCcccccCCccEEEEEcCCCcceeccCcccCcccchhhhh
Q 036269          413 LVSVFEIERVNIAKEETELFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFCDELRQVFPANLGKKAAAEEMVL  492 (623)
Q Consensus       413 l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~L~~L~l~~C~~l~~~~~~~l~~~~~L~~l~~  492 (623)
                      +++-.        -+-+..++.|+.|+++.+ .|.+++..  .+.++..|++|+++| ++++.+ |..++.|..|++|..
T Consensus       371 Ltd~c--------~p~l~~~~hLKVLhLsyN-rL~~fpas--~~~kle~LeeL~LSG-NkL~~L-p~tva~~~~L~tL~a  437 (1081)
T KOG0618|consen  371 LTDSC--------FPVLVNFKHLKVLHLSYN-RLNSFPAS--KLRKLEELEELNLSG-NKLTTL-PDTVANLGRLHTLRA  437 (1081)
T ss_pred             ccccc--------hhhhccccceeeeeeccc-ccccCCHH--HHhchHHhHHHhccc-chhhhh-hHHHHhhhhhHHHhh
Confidence            66531        234567888999999888 56655322  345678888999998 888887 688888889998888


Q ss_pred             hcccccccceeccccCCCCCCCCCCccEEEEecCCCcceecchhhhhccCCCCEEEEccCCc
Q 036269          493 YRNRRDQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSRCPT  554 (623)
Q Consensus       493 ~~~~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~  554 (623)
                      .+|..        .++| .+..++.|+.++++. ++|+.+........ +.||.|+++|++.
T Consensus       438 hsN~l--------~~fP-e~~~l~qL~~lDlS~-N~L~~~~l~~~~p~-p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  438 HSNQL--------LSFP-ELAQLPQLKVLDLSC-NNLSEVTLPEALPS-PNLKYLDLSGNTR  488 (1081)
T ss_pred             cCCce--------eech-hhhhcCcceEEeccc-chhhhhhhhhhCCC-cccceeeccCCcc
Confidence            88755        3445 667888899999865 77777644322222 7899999999885

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.84  E-value=9.7e-21  Score=205.45  Aligned_cols=138  Identities=38%  Similarity=0.610  Sum_probs=110.1

Q ss_pred             CchhHHHHHHHHhh-----ccceeeecCCCCCCCCCCCCCCCCcEEEcccCCcccccccCCCCCcceEEccCCC--CCCC
Q 036269            1 MHDVVRYVAQQIAS-----KNKFLIKAGVELKDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKND--LLDI   73 (623)
Q Consensus         1 mHdl~~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~--~~~l   73 (623)
                      |||+|||||.++++     +|...+..+.++.+.|.+.....+|++.+.++.+..++....+++|++|.+.+|.  +..+
T Consensus       483 mHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~i  562 (889)
T KOG4658|consen  483 MHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEI  562 (889)
T ss_pred             eeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhc
Confidence            89999999999999     7776677666777788888889999999999999999888888899999999997  5588


Q ss_pred             ChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCCcCCCCc-ccccCCcCCcEEEcCCC
Q 036269           74 PDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDL-SLIGELSLLEILDLSES  141 (623)
Q Consensus        74 ~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~i-~~~~~l~~L~~L~l~~~  141 (623)
                      +..+|..++.||+||+++|.-.  ..+|..++.+-+||+|+++++. +..+ ..++++..|.+||+..+
T Consensus       563 s~~ff~~m~~LrVLDLs~~~~l--~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~  628 (889)
T KOG4658|consen  563 SGEFFRSLPLLRVLDLSGNSSL--SKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVT  628 (889)
T ss_pred             CHHHHhhCcceEEEECCCCCcc--CcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccc
Confidence            8888899999999999987543  7888888888888877777776 4443 34444444444444443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.69  E-value=5.9e-19  Score=145.79  Aligned_cols=160  Identities=23%  Similarity=0.418  Sum_probs=114.8

Q ss_pred             CCCCCCCCCCCCCCcEEEcccCCcccccccC-CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchh
Q 036269           25 ELKDWPSINTFEDLTGISLMFNDIHEVHEGL-QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSS  103 (623)
Q Consensus        25 ~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~  103 (623)
                      .+.++|+.-.++.++.|.++.|+++.+|+.+ .+.+|+.|++.+|.+.++|.++ +.+++||.|+++-|.+   ..+|..
T Consensus        22 sf~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~i-ssl~klr~lnvgmnrl---~~lprg   97 (264)
T KOG0617|consen   22 SFEELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSI-SSLPKLRILNVGMNRL---NILPRG   97 (264)
T ss_pred             cHhhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhh-hhchhhhheecchhhh---hcCccc
Confidence            4566666666777777888888887777777 7777888888888777777775 7778888888877777   677777


Q ss_pred             hhccccCcEEeccCCcCCCC--c-ccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhcccc
Q 036269          104 LSFLINLRTLSLHDCQHFGD--L-SLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRK  180 (623)
Q Consensus       104 ~~~l~~L~~L~l~~~~~l~~--i-~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~  180 (623)
                      |+.++.|++||+.+|+ +.+  + ..+-.+..|+-|++++|++.-+|..++++++||.|.+++ +.+-.+|.+ ++.+..
T Consensus        98 fgs~p~levldltynn-l~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrd-ndll~lpke-ig~lt~  174 (264)
T KOG0617|consen   98 FGSFPALEVLDLTYNN-LNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRD-NDLLSLPKE-IGDLTR  174 (264)
T ss_pred             cCCCchhhhhhccccc-cccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeecc-CchhhCcHH-HHHHHH
Confidence            7777888888877776 522  2 345556667777777777777777777777777777777 444456666 666666


Q ss_pred             CcEEEeccccc
Q 036269          181 LEELYMSKTFC  191 (623)
Q Consensus       181 L~~L~l~~~~~  191 (623)
                      |++|++.+|.+
T Consensus       175 lrelhiqgnrl  185 (264)
T KOG0617|consen  175 LRELHIQGNRL  185 (264)
T ss_pred             HHHHhccccee
Confidence            77666666655

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.65  E-value=2.7e-18  Score=141.95  Aligned_cols=166  Identities=28%  Similarity=0.428  Sum_probs=150.7

Q ss_pred             cccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCCcCCCCc-cc
Q 036269           48 IHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDL-SL  126 (623)
Q Consensus        48 ~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~i-~~  126 (623)
                      +.+++..+.+.+++.|.+++|.++.+|+.+ +++++|++|++++|++   +.+|..+..+++|+.|++.-|. +..+ ..
T Consensus        23 f~~~~gLf~~s~ITrLtLSHNKl~~vppni-a~l~nlevln~~nnqi---e~lp~~issl~klr~lnvgmnr-l~~lprg   97 (264)
T KOG0617|consen   23 FEELPGLFNMSNITRLTLSHNKLTVVPPNI-AELKNLEVLNLSNNQI---EELPTSISSLPKLRILNVGMNR-LNILPRG   97 (264)
T ss_pred             HhhcccccchhhhhhhhcccCceeecCCcH-HHhhhhhhhhcccchh---hhcChhhhhchhhhheecchhh-hhcCccc
Confidence            456677778899999999999999888886 9999999999999999   8999999999999999999888 6544 78


Q ss_pred             ccCCcCCcEEEcCCCCCc--cccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecccccccccccccccccc
Q 036269          127 IGELSLLEILDLSESDVS--EIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSN  204 (623)
Q Consensus       127 ~~~l~~L~~L~l~~~~i~--~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  204 (623)
                      ++.++-|+.||+..|++.  .+|..|-.|+.|+.|++++ +....+|.+ ++++++||.|.+..|.+            -
T Consensus        98 fgs~p~levldltynnl~e~~lpgnff~m~tlralyl~d-ndfe~lp~d-vg~lt~lqil~lrdndl------------l  163 (264)
T KOG0617|consen   98 FGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD-NDFEILPPD-VGKLTNLQILSLRDNDL------------L  163 (264)
T ss_pred             cCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcC-CCcccCChh-hhhhcceeEEeeccCch------------h
Confidence            999999999999999987  7899999999999999999 677889988 89999999999999887            4


Q ss_pred             cccccccCCCCccEEEeecCCCccCCCc
Q 036269          205 AKFIELGALSRLTSLHIDIPEGEIMPSD  232 (623)
Q Consensus       205 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~  232 (623)
                      ..|++++.++.|++|++.+|.+.-+|+.
T Consensus       164 ~lpkeig~lt~lrelhiqgnrl~vlppe  191 (264)
T KOG0617|consen  164 SLPKEIGDLTRLRELHIQGNRLTVLPPE  191 (264)
T ss_pred             hCcHHHHHHHHHHHHhcccceeeecChh
Confidence            7889999999999999999998888765

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.57  E-value=6.4e-14  Score=149.42  Aligned_cols=255  Identities=18%  Similarity=0.155  Sum_probs=143.9

Q ss_pred             CcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccC
Q 036269           38 LTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHD  117 (623)
Q Consensus        38 l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~  117 (623)
                      -..|+++.+.++.+|+.+. ++|+.|.+.+|.++.+|.    ..++|++|++++|.+   ..+|..   .++|+.|++.+
T Consensus       203 ~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~L---tsLP~l---p~sL~~L~Ls~  271 (788)
T PRK15387        203 NAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQL---TSLPVL---PPGLLELSIFS  271 (788)
T ss_pred             CcEEEcCCCCCCcCCcchh-cCCCEEEccCCcCCCCCC----CCCCCcEEEecCCcc---CcccCc---ccccceeeccC
Confidence            3456677777776666542 357777777777766653    246777777777776   455532   35667777777


Q ss_pred             CcCCCCcccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccccccccccc
Q 036269          118 CQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFEN  197 (623)
Q Consensus       118 ~~~l~~i~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~  197 (623)
                      |. +..++.  ...+|+.|++++|.++.+|..   .++|+.|++++ +.+..+|.. .   ..|+.|++++|.+.     
T Consensus       272 N~-L~~Lp~--lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~-N~L~~Lp~l-p---~~L~~L~Ls~N~L~-----  335 (788)
T PRK15387        272 NP-LTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSD-NQLASLPAL-P---SELCKLWAYNNQLT-----  335 (788)
T ss_pred             Cc-hhhhhh--chhhcCEEECcCCcccccccc---ccccceeECCC-CccccCCCC-c---ccccccccccCccc-----
Confidence            76 554422  124566777777777766642   35677777777 345555531 1   34556666666552     


Q ss_pred             ccccccccccccccCCCCccEEEeecCCCccCCCcccccCccEEEEEeCCCCCCCcchhhhhhhhcccccccceeeeccc
Q 036269          198 EDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSDMSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSRAMGLSQD  277 (623)
Q Consensus       198 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~  277 (623)
                             .++.   -..+|+.|++++|.+..+|..  ..+|..|+++++....                           
T Consensus       336 -------~LP~---lp~~Lq~LdLS~N~Ls~LP~l--p~~L~~L~Ls~N~L~~---------------------------  376 (788)
T PRK15387        336 -------SLPT---LPSGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLTS---------------------------  376 (788)
T ss_pred             -------cccc---cccccceEecCCCccCCCCCC--Ccccceehhhcccccc---------------------------
Confidence                   1221   113577777777776666543  3455555555443221                           


Q ss_pred             cccccchHHHHHHHhhceeEeecccCCcccccccccccCccCccEEEEecccCceeecccccccccccccccceeecccC
Q 036269          278 MRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLLKLEWLMIVDN  357 (623)
Q Consensus       278 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~  357 (623)
                           +|..    ..+|+.|++++|.. ..+ +.    ..++|+.|++++| .++.++.        .+.+|+.|+++++
T Consensus       377 -----LP~l----~~~L~~LdLs~N~L-t~L-P~----l~s~L~~LdLS~N-~LssIP~--------l~~~L~~L~Ls~N  432 (788)
T PRK15387        377 -----LPAL----PSGLKELIVSGNRL-TSL-PV----LPSELKELMVSGN-RLTSLPM--------LPSGLLSLSVYRN  432 (788)
T ss_pred             -----Cccc----ccccceEEecCCcc-cCC-CC----cccCCCEEEccCC-cCCCCCc--------chhhhhhhhhccC
Confidence                 1111    13566677766542 221 11    1356777777777 4554432        1345677777776


Q ss_pred             cccccccccccCC--CcCCCccEEEEeecCCccc
Q 036269          358 RNFVEICHGQLPA--GCLSNVKRLDVRDCGSVLK  389 (623)
Q Consensus       358 ~~l~~~~~~~~~~--~~~~~L~~L~l~~c~~l~~  389 (623)
                      . ++.     +|.  ..+++|+.|+++++ .+++
T Consensus       433 q-Lt~-----LP~sl~~L~~L~~LdLs~N-~Ls~  459 (788)
T PRK15387        433 Q-LTR-----LPESLIHLSSETTVNLEGN-PLSE  459 (788)
T ss_pred             c-ccc-----cChHHhhccCCCeEECCCC-CCCc
Confidence            5 332     222  35677788888774 4544

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.56  E-value=5.4e-14  Score=149.99  Aligned_cols=258  Identities=21%  Similarity=0.186  Sum_probs=170.5

Q ss_pred             CCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCCcCCCCcccccCCcCCcEEE
Q 036269           58 PRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILD  137 (623)
Q Consensus        58 ~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~i~~~~~l~~L~~L~  137 (623)
                      ..-..|+++++.++.+|+.+.   ++|+.|++.+|.+   +.+|.   .+++|++|++++|. ++.++.  ..++|+.|+
T Consensus       201 ~~~~~LdLs~~~LtsLP~~l~---~~L~~L~L~~N~L---t~LP~---lp~~Lk~LdLs~N~-LtsLP~--lp~sL~~L~  268 (788)
T PRK15387        201 NGNAVLNVGESGLTTLPDCLP---AHITTLVIPDNNL---TSLPA---LPPELRTLEVSGNQ-LTSLPV--LPPGLLELS  268 (788)
T ss_pred             CCCcEEEcCCCCCCcCCcchh---cCCCEEEccCCcC---CCCCC---CCCCCcEEEecCCc-cCcccC--cccccceee
Confidence            456789999999999998762   5899999999999   67775   35899999999998 877743  247899999


Q ss_pred             cCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecccccccccccccccccccccccccCCCCcc
Q 036269          138 LSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLT  217 (623)
Q Consensus       138 l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~  217 (623)
                      +++|.+..+|..   .++|+.|++++ +.++.+|..    .++|+.|++++|.+.            .++..   ..+|+
T Consensus       269 Ls~N~L~~Lp~l---p~~L~~L~Ls~-N~Lt~LP~~----p~~L~~LdLS~N~L~------------~Lp~l---p~~L~  325 (788)
T PRK15387        269 IFSNPLTHLPAL---PSGLCKLWIFG-NQLTSLPVL----PPGLQELSVSDNQLA------------SLPAL---PSELC  325 (788)
T ss_pred             ccCCchhhhhhc---hhhcCEEECcC-Ccccccccc----ccccceeECCCCccc------------cCCCC---ccccc
Confidence            999999988853   36788999999 567778752    378999999999873            22221   23577


Q ss_pred             EEEeecCCCccCCCcccccCccEEEEEeCCCCCCCcchhhhhhhhcccccccceeeeccccccccchHHHHHHHhhceeE
Q 036269          218 SLHIDIPEGEIMPSDMSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEIL  297 (623)
Q Consensus       218 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L  297 (623)
                      .|++++|.+..+|..  ..+|+.|++++|.....+                             ..|       .+|+.|
T Consensus       326 ~L~Ls~N~L~~LP~l--p~~Lq~LdLS~N~Ls~LP-----------------------------~lp-------~~L~~L  367 (788)
T PRK15387        326 KLWAYNNQLTSLPTL--PSGLQELSVSDNQLASLP-----------------------------TLP-------SELYKL  367 (788)
T ss_pred             ccccccCcccccccc--ccccceEecCCCccCCCC-----------------------------CCC-------ccccee
Confidence            888999988777753  346788888776533222                             111       456666


Q ss_pred             eecccCCcccccccccccCccCccEEEEecccCceeecccccccccccccccceeecccCcccccccccccCCCcCCCcc
Q 036269          298 ALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLLKLEWLMIVDNRNFVEICHGQLPAGCLSNVK  377 (623)
Q Consensus       298 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~  377 (623)
                      ++.++.. ..+ +.    ...+|+.|++++| .++.++.        ..++|+.|+++++. ++.     +|. ...+|+
T Consensus       368 ~Ls~N~L-~~L-P~----l~~~L~~LdLs~N-~Lt~LP~--------l~s~L~~LdLS~N~-Lss-----IP~-l~~~L~  425 (788)
T PRK15387        368 WAYNNRL-TSL-PA----LPSGLKELIVSGN-RLTSLPV--------LPSELKELMVSGNR-LTS-----LPM-LPSGLL  425 (788)
T ss_pred             hhhcccc-ccC-cc----cccccceEEecCC-cccCCCC--------cccCCCEEEccCCc-CCC-----CCc-chhhhh
Confidence            6665542 222 21    1346777777776 4444332        13456666766665 322     221 123556


Q ss_pred             EEEEeecCCcccccchhHHHhccccceEEEeccccce
Q 036269          378 RLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLV  414 (623)
Q Consensus       378 ~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~  414 (623)
                      .|++++ +.++. +|.. +..+++|+.|++++ +.++
T Consensus       426 ~L~Ls~-NqLt~-LP~s-l~~L~~L~~LdLs~-N~Ls  458 (788)
T PRK15387        426 SLSVYR-NQLTR-LPES-LIHLSSETTVNLEG-NPLS  458 (788)
T ss_pred             hhhhcc-Ccccc-cChH-HhhccCCCeEECCC-CCCC
Confidence            666665 34543 4544 55666666666666 4443

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.54  E-value=2.2e-15  Score=141.27  Aligned_cols=267  Identities=20%  Similarity=0.194  Sum_probs=153.8

Q ss_pred             CCCCCCCCCCCCCCCCcEEEcccCCcccccccC--CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccC-CcccccCC
Q 036269           23 GVELKDWPSINTFEDLTGISLMFNDIHEVHEGL--QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGG-SGVFSLFS   99 (623)
Q Consensus        23 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~-~~~~~~~~   99 (623)
                      +.++..+| -+..+....+++..|+|+.+|+..  .+++||.|+|++|.+..+.+.+|.+++.|-.|.+.+ |.+   +.
T Consensus        55 ~~GL~eVP-~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI---~~  130 (498)
T KOG4237|consen   55 GKGLTEVP-ANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI---TD  130 (498)
T ss_pred             CCCcccCc-ccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch---hh
Confidence            45666666 234466677888888888888765  778888888888888877777788888887777766 666   66


Q ss_pred             Cch-hhhccccCcEEeccCCcCCCCc--ccccCCcCCcEEEcCCCCCccccc-cccCCCccCEEeccCCCCCCc------
Q 036269          100 LPS-SLSFLINLRTLSLHDCQHFGDL--SLIGELSLLEILDLSESDVSEIPV-SFGRLGHLRLLDLTDCYNLEL------  169 (623)
Q Consensus       100 lp~-~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~~------  169 (623)
                      +|+ .|+.+..|+.|.+.-|. +.-+  ..+..+++|+.|.+.+|.+..++. .+..+..++.+.+..+.++..      
T Consensus       131 l~k~~F~gL~slqrLllNan~-i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wl  209 (498)
T KOG4237|consen  131 LPKGAFGGLSSLQRLLLNANH-INCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWL  209 (498)
T ss_pred             hhhhHhhhHHHHHHHhcChhh-hcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchh
Confidence            664 46777788877777776 5444  567777777777777777776665 566666666666554332211      


Q ss_pred             ------CchhhhhccccCcEEEeccccccccccc-------------cccc-ccccc-cccccCCCCccEEEeecCCCcc
Q 036269          170 ------IPRGVLSRLRKLEELYMSKTFCHWQFEN-------------EDDS-RSNAK-FIELGALSRLTSLHIDIPEGEI  228 (623)
Q Consensus       170 ------l~~~~~~~l~~L~~L~l~~~~~~~~~~~-------------~~~~-~~~~~-~~~l~~l~~L~~L~l~~~~~~~  228 (623)
                            .|.. .+......-..+....+....++             ..+. ..... ..-++++++|+.|++++|.++.
T Consensus       210 a~~~a~~~ie-tsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~  288 (498)
T KOG4237|consen  210 ADDLAMNPIE-TSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITR  288 (498)
T ss_pred             hhHHhhchhh-cccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccch
Confidence                  0100 11111000000000000000000             0000 00001 1125677777777777777766


Q ss_pred             CCCc--ccccCccEEEEEeCCCCCCCcchhhhhhhhcccccccceeeeccccccccchHHHHHHHhhceeEeecccC
Q 036269          229 MPSD--MSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEILALGDVN  303 (623)
Q Consensus       229 ~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  303 (623)
                      +...  .....+++|.+..+....+...-|.       ....+++++++++....-.|..+... ..|..|.+-.++
T Consensus       289 i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~-------~ls~L~tL~L~~N~it~~~~~aF~~~-~~l~~l~l~~Np  357 (498)
T KOG4237|consen  289 IEDGAFEGAAELQELYLTRNKLEFVSSGMFQ-------GLSGLKTLSLYDNQITTVAPGAFQTL-FSLSTLNLLSNP  357 (498)
T ss_pred             hhhhhhcchhhhhhhhcCcchHHHHHHHhhh-------ccccceeeeecCCeeEEEeccccccc-ceeeeeehccCc
Confidence            6554  5666777777766654332221111       34466777777766554445444444 567777776554

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.54  E-value=5.8e-16  Score=145.05  Aligned_cols=148  Identities=26%  Similarity=0.350  Sum_probs=124.4

Q ss_pred             EEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCCc
Q 036269           40 GISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQ  119 (623)
Q Consensus        40 ~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~  119 (623)
                      .++-++..++++|..+- +.-..+.|+.|.+..+|+.+|+.+++||.|||+.|.++  ..-|.+|..++.|-.|-+.+++
T Consensus        50 ~VdCr~~GL~eVP~~LP-~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is--~I~p~AF~GL~~l~~Lvlyg~N  126 (498)
T KOG4237|consen   50 IVDCRGKGLTEVPANLP-PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS--FIAPDAFKGLASLLSLVLYGNN  126 (498)
T ss_pred             eEEccCCCcccCcccCC-CcceEEEeccCCcccCChhhccchhhhceecccccchh--hcChHhhhhhHhhhHHHhhcCC
Confidence            34555566788887763 34567899999999999999999999999999999996  6678899999999999888855


Q ss_pred             CCCCc--ccccCCcCCcEEEcCCCCCcccc-ccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccccc
Q 036269          120 HFGDL--SLIGELSLLEILDLSESDVSEIP-VSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFC  191 (623)
Q Consensus       120 ~l~~i--~~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~  191 (623)
                      +|+++  ..++++..|+.|.+.-|++..++ +.+..+++|..|.+.+ +.+..++...+..+..++++.+..|.+
T Consensus       127 kI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyD-n~~q~i~~~tf~~l~~i~tlhlA~np~  200 (498)
T KOG4237|consen  127 KITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYD-NKIQSICKGTFQGLAAIKTLHLAQNPF  200 (498)
T ss_pred             chhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccc-hhhhhhccccccchhccchHhhhcCcc
Confidence            59888  68999999999999999988554 6788999999999999 778888876688899999988877653

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.53  E-value=3.7e-14  Score=152.24  Aligned_cols=179  Identities=19%  Similarity=0.294  Sum_probs=113.2

Q ss_pred             CCCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEec
Q 036269           36 EDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSL  115 (623)
Q Consensus        36 ~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l  115 (623)
                      .+.+.|+++++.++.+|..+ .++++.|++++|.+..+|..+   .++|++|++++|.+   ..+|..+.  .+|+.|++
T Consensus       178 ~~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l---~~nL~~L~Ls~N~L---tsLP~~l~--~~L~~L~L  248 (754)
T PRK15370        178 NNKTELRLKILGLTTIPACI-PEQITTLILDNNELKSLPENL---QGNIKTLYANSNQL---TSIPATLP--DTIQEMEL  248 (754)
T ss_pred             cCceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhh---ccCCCEEECCCCcc---ccCChhhh--ccccEEEC
Confidence            34567788877777777654 246788888888887777654   25788888888877   66776543  46888888


Q ss_pred             cCCcCCCCc-ccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecccccccc
Q 036269          116 HDCQHFGDL-SLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQ  194 (623)
Q Consensus       116 ~~~~~l~~i-~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~  194 (623)
                      ++|. +..+ ..+  ..+|++|++++|.++.+|..+.  ++|+.|++++ +.++.+|.. +.  ..|+.|++++|.+.  
T Consensus       249 s~N~-L~~LP~~l--~s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~-N~Lt~LP~~-lp--~sL~~L~Ls~N~Lt--  317 (754)
T PRK15370        249 SINR-ITELPERL--PSALQSLDLFHNKISCLPENLP--EELRYLSVYD-NSIRTLPAH-LP--SGITHLNVQSNSLT--  317 (754)
T ss_pred             cCCc-cCcCChhH--hCCCCEEECcCCccCccccccC--CCCcEEECCC-CccccCccc-ch--hhHHHHHhcCCccc--
Confidence            8877 6665 222  2467888888887777776554  4788888877 355566653 22  35667777776652  


Q ss_pred             cccccccccccccccccCCCCccEEEeecCCCccCCCcccccCccEEEEEeCC
Q 036269          195 FENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSDMSFQNLTSFSITIGG  247 (623)
Q Consensus       195 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~  247 (623)
                                .++..+  .++|+.|++++|.+..+|... .++|+.|++++|.
T Consensus       318 ----------~LP~~l--~~sL~~L~Ls~N~Lt~LP~~l-~~sL~~L~Ls~N~  357 (754)
T PRK15370        318 ----------ALPETL--PPGLKTLEAGENALTSLPASL-PPELQVLDVSKNQ  357 (754)
T ss_pred             ----------cCCccc--cccceeccccCCccccCChhh-cCcccEEECCCCC
Confidence                      222222  245666666666655554331 2345555555443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.48  E-value=4.3e-13  Score=144.12  Aligned_cols=192  Identities=19%  Similarity=0.309  Sum_probs=149.3

Q ss_pred             CCCCCCCCCCCCCCCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchh
Q 036269           24 VELKDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSS  103 (623)
Q Consensus        24 ~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~  103 (623)
                      .++..+|. ...+.++.|++++|.++.+|.... .+|+.|++++|.+..+|..+   .+.|+.|++++|.+   ..+|..
T Consensus       188 ~~LtsLP~-~Ip~~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~N~LtsLP~~l---~~~L~~L~Ls~N~L---~~LP~~  259 (754)
T PRK15370        188 LGLTTIPA-CIPEQITTLILDNNELKSLPENLQ-GNIKTLYANSNQLTSIPATL---PDTIQEMELSINRI---TELPER  259 (754)
T ss_pred             CCcCcCCc-ccccCCcEEEecCCCCCcCChhhc-cCCCEEECCCCccccCChhh---hccccEEECcCCcc---CcCChh
Confidence            45666664 234789999999999999987653 58999999999999998765   35799999999999   788876


Q ss_pred             hhccccCcEEeccCCcCCCCcc-cccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCc
Q 036269          104 LSFLINLRTLSLHDCQHFGDLS-LIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLE  182 (623)
Q Consensus       104 ~~~l~~L~~L~l~~~~~l~~i~-~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~  182 (623)
                      +.  .+|++|++++|. +..++ .+  ..+|++|++++|.++.+|..+.  ++|+.|++++ +.+..+|.. +  .++|+
T Consensus       260 l~--s~L~~L~Ls~N~-L~~LP~~l--~~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~-N~Lt~LP~~-l--~~sL~  328 (754)
T PRK15370        260 LP--SALQSLDLFHNK-ISCLPENL--PEELRYLSVYDNSIRTLPAHLP--SGITHLNVQS-NSLTALPET-L--PPGLK  328 (754)
T ss_pred             Hh--CCCCEEECcCCc-cCcccccc--CCCCcEEECCCCccccCcccch--hhHHHHHhcC-CccccCCcc-c--cccce
Confidence            64  589999999988 87663 23  2589999999999999887654  5799999999 566677764 2  36899


Q ss_pred             EEEecccccccccccccccccccccccccCCCCccEEEeecCCCccCCCcccccCccEEEEEeCCCC
Q 036269          183 ELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSDMSFQNLTSFSITIGGPE  249 (623)
Q Consensus       183 ~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~  249 (623)
                      .|++++|.+.            .++..+.  ++|+.|++++|.+..+|... .++|+.|++++|...
T Consensus       329 ~L~Ls~N~Lt------------~LP~~l~--~sL~~L~Ls~N~L~~LP~~l-p~~L~~LdLs~N~Lt  380 (754)
T PRK15370        329 TLEAGENALT------------SLPASLP--PELQVLDVSKNQITVLPETL-PPTITTLDVSRNALT  380 (754)
T ss_pred             eccccCCccc------------cCChhhc--CcccEEECCCCCCCcCChhh-cCCcCEEECCCCcCC
Confidence            9999998773            3343332  68999999999988777542 357888888776543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.45  E-value=2.8e-16  Score=148.37  Aligned_cols=300  Identities=17%  Similarity=0.174  Sum_probs=143.8

Q ss_pred             hceeEeecccCCcccccccccccCccCccEEEEecccCceeecccccccccccccccceeecccCcccccccccccCCCc
Q 036269          293 RSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLLKLEWLMIVDNRNFVEICHGQLPAGC  372 (623)
Q Consensus       293 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~  372 (623)
                      .|+.|.+.+|....+.........+|++++|.+.+|.++++..-.   .....+++|++|++..|..+++..-..+ ...
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~---sla~~C~~l~~l~L~~c~~iT~~~Lk~l-a~g  214 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLL---SLARYCRKLRHLNLHSCSSITDVSLKYL-AEG  214 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHH---HHHHhcchhhhhhhcccchhHHHHHHHH-HHh
Confidence            456666666665544333333345666666666666544432211   1334455666666666655554322111 124


Q ss_pred             CCCccEEEEeecCCcccccchhHHHhccccceEEEeccccceeeeeccceeccccccccccCccEEecCCccchhhcccC
Q 036269          373 LSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEIERVNIAKEETELFSSLEKLTLIGLPRMTDIWKG  452 (623)
Q Consensus       373 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~  452 (623)
                      +++|+.|+++.|+.+++.-......++..++.+-..+|..+..-.    +   ...-..++-+.++++.+|..+++....
T Consensus       215 C~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~----l---~~~~~~~~~i~~lnl~~c~~lTD~~~~  287 (483)
T KOG4341|consen  215 CRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEA----L---LKAAAYCLEILKLNLQHCNQLTDEDLW  287 (483)
T ss_pred             hhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHH----H---HHHhccChHhhccchhhhccccchHHH
Confidence            566666666666665543222223344445555444554432110    0   000112334444444455444432100


Q ss_pred             CCcccccCCccEEEEEcCCCcceeccCccc-CcccchhhhhhcccccccceeccccCCCCC-CCCCCccEEEEecCCCcc
Q 036269          453 DTQFVSLHDLKKIRVVFCDELRQVFPANLG-KKAAAEEMVLYRNRRDQIHIHATTSTSSPT-PSLGNLVSITIRGCGKLR  530 (623)
Q Consensus       453 ~~~~~~l~~L~~L~l~~C~~l~~~~~~~l~-~~~~L~~l~~~~~~~~~l~~~~~~~~~~~~-~~l~~L~~L~i~~c~~l~  530 (623)
                       .....+..|+.|+.++|..+++.+...++ ++.+|+.+-+..|+      .+++.-...+ .+.+.|+.+++.+|..+.
T Consensus       288 -~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~------~fsd~~ft~l~rn~~~Le~l~~e~~~~~~  360 (483)
T KOG4341|consen  288 -LIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQ------QFSDRGFTMLGRNCPHLERLDLEECGLIT  360 (483)
T ss_pred             -HHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccc------hhhhhhhhhhhcCChhhhhhcccccceeh
Confidence             01112444555555555554444333332 24555555554441      1111111111 345667777777766665


Q ss_pred             eecchhhhhccCCCCEEEEccCCchhhhhcCCCCcccCcCCCcceeecCcccceecccCcccceecCCCCcceeecCCcc
Q 036269          531 NLFTTSMVKSLVRLESLEVSRCPTLQEIIMNDEGEVGLQGASTEKITFPSLFSIQLCLLDSLTCFCSSGSHATVEFLALE  610 (623)
Q Consensus       531 ~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~  610 (623)
                      +-.-.....+++.|+.|.++.|..+++.     |+.++.+   ..-....|..+.+.+||.+++.-. ..  ...|+.||
T Consensus       361 d~tL~sls~~C~~lr~lslshce~itD~-----gi~~l~~---~~c~~~~l~~lEL~n~p~i~d~~L-e~--l~~c~~Le  429 (483)
T KOG4341|consen  361 DGTLASLSRNCPRLRVLSLSHCELITDE-----GIRHLSS---SSCSLEGLEVLELDNCPLITDATL-EH--LSICRNLE  429 (483)
T ss_pred             hhhHhhhccCCchhccCChhhhhhhhhh-----hhhhhhh---ccccccccceeeecCCCCchHHHH-HH--HhhCcccc
Confidence            5423334556677777777777766554     3333322   223445666777777777665543 22  23466777


Q ss_pred             EEEeccCCCCc
Q 036269          611 ALQIIDCPGMK  621 (623)
Q Consensus       611 ~L~i~~c~~l~  621 (623)
                      .+++.+|..++
T Consensus       430 ri~l~~~q~vt  440 (483)
T KOG4341|consen  430 RIELIDCQDVT  440 (483)
T ss_pred             eeeeechhhhh
Confidence            77777776543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.40  E-value=3.1e-13  Score=147.48  Aligned_cols=137  Identities=28%  Similarity=0.398  Sum_probs=110.5

Q ss_pred             CcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCc--ccccCCCchh-hhccccCcEEeccCCcCCCC
Q 036269           47 DIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSG--VFSLFSLPSS-LSFLINLRTLSLHDCQHFGD  123 (623)
Q Consensus        47 ~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~--~~~~~~lp~~-~~~l~~L~~L~l~~~~~l~~  123 (623)
                      ...+.|...+....|...+.+|.+..++..  .++++|++|-+.++.  +   ..++.. |..++.|++||+++|..+..
T Consensus       512 ~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~--~~~~~L~tLll~~n~~~l---~~is~~ff~~m~~LrVLDLs~~~~l~~  586 (889)
T KOG4658|consen  512 GLSEIPQVKSWNSVRRMSLMNNKIEHIAGS--SENPKLRTLLLQRNSDWL---LEISGEFFRSLPLLRVLDLSGNSSLSK  586 (889)
T ss_pred             CccccccccchhheeEEEEeccchhhccCC--CCCCccceEEEeecchhh---hhcCHHHHhhCcceEEEECCCCCccCc
Confidence            334455555667889999989988877664  477899999999885  5   555554 67899999999999886777


Q ss_pred             c-ccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccc
Q 036269          124 L-SLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKT  189 (623)
Q Consensus       124 i-~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~  189 (623)
                      + ..++.+.+||+|+++++.+..+|.+++++..|.+|++..+.....+|. +...+.+|++|.+...
T Consensus       587 LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~-i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  587 LPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPG-ILLELQSLRVLRLPRS  652 (889)
T ss_pred             CChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccc-hhhhcccccEEEeecc
Confidence            6 789999999999999999999999999999999999998666666644 4667999999988654

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.32  E-value=3e-14  Score=134.84  Aligned_cols=180  Identities=13%  Similarity=0.104  Sum_probs=120.0

Q ss_pred             HHHHHHHhhceeEeecccCCcccccccccccCccCccEEEEecccCceeecccccccccccccccceeecccCccccccc
Q 036269          285 SWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLLKLEWLMIVDNRNFVEIC  364 (623)
Q Consensus       285 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~  364 (623)
                      ..+...++.++++++..|..+++........++++|+.+.+++|+.++.-...   .....+..++.+...+|..++.-.
T Consensus       183 ~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~---~~~rG~~~l~~~~~kGC~e~~le~  259 (483)
T KOG4341|consen  183 LSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQ---ALQRGCKELEKLSLKGCLELELEA  259 (483)
T ss_pred             HHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcch---HHhccchhhhhhhhcccccccHHH
Confidence            34555668899999999998888665544467999999999999877651111   133445567778777887554321


Q ss_pred             ccccCCCcCCCccEEEEeecCCcccccchhHHHhccccceEEEeccccceeeeeccceeccccccccccCccEEecCCcc
Q 036269          365 HGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEIERVNIAKEETELFSSLEKLTLIGLP  444 (623)
Q Consensus       365 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~  444 (623)
                      .... .+.++-+.++++..|..+++.-.......+..|+.|+.++|..+++...       ..--...++|+.+-++.|.
T Consensus       260 l~~~-~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l-------~aLg~~~~~L~~l~l~~c~  331 (483)
T KOG4341|consen  260 LLKA-AAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVL-------WALGQHCHNLQVLELSGCQ  331 (483)
T ss_pred             HHHH-hccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHH-------HHHhcCCCceEEEeccccc
Confidence            1111 2356667778888888888754444455678899999999988766421       1111356889999999998


Q ss_pred             chhhcccCCCcccccCCccEEEEEcCCCccee
Q 036269          445 RMTDIWKGDTQFVSLHDLKKIRVVFCDELRQV  476 (623)
Q Consensus       445 ~l~~i~~~~~~~~~l~~L~~L~l~~C~~l~~~  476 (623)
                      .+++.... .....++.|+.+++.+|...++.
T Consensus       332 ~fsd~~ft-~l~rn~~~Le~l~~e~~~~~~d~  362 (483)
T KOG4341|consen  332 QFSDRGFT-MLGRNCPHLERLDLEECGLITDG  362 (483)
T ss_pred             hhhhhhhh-hhhcCChhhhhhcccccceehhh
Confidence            88765222 12245778888888888665543

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.30  E-value=9.6e-13  Score=131.33  Aligned_cols=160  Identities=24%  Similarity=0.137  Sum_probs=68.2

Q ss_pred             CCCcceEEccCCCCC-----CCChhhHhCCCcccEEEccCCcccc----cCCCchhhhccccCcEEeccCCcCCCC-c-c
Q 036269           57 CPRLQALFLQKNDLL-----DIPDPFFQGMKDLKVLDLGGSGVFS----LFSLPSSLSFLINLRTLSLHDCQHFGD-L-S  125 (623)
Q Consensus        57 ~~~L~~L~l~~~~~~-----~l~~~~~~~l~~Lr~L~l~~~~~~~----~~~lp~~~~~l~~L~~L~l~~~~~l~~-i-~  125 (623)
                      ++.|+.|+++++.+.     .++. .+...+.+++++++++.+..    ...++..+..+++|+.|++++|. +.. . .
T Consensus        22 l~~L~~l~l~~~~l~~~~~~~i~~-~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~   99 (319)
T cd00116          22 LLCLQVLRLEGNTLGEEAAKALAS-ALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNA-LGPDGCG   99 (319)
T ss_pred             HhhccEEeecCCCCcHHHHHHHHH-HHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCC-CChhHHH
Confidence            344555555555543     1211 12344455555555544410    00122234445555555555555 321 1 2


Q ss_pred             cccCC---cCCcEEEcCCCCCc-----cccccccCC-CccCEEeccCCCCCC----cCchhhhhccccCcEEEecccccc
Q 036269          126 LIGEL---SLLEILDLSESDVS-----EIPVSFGRL-GHLRLLDLTDCYNLE----LIPRGVLSRLRKLEELYMSKTFCH  192 (623)
Q Consensus       126 ~~~~l---~~L~~L~l~~~~i~-----~lp~~i~~l-~~L~~L~l~~~~~~~----~l~~~~~~~l~~L~~L~l~~~~~~  192 (623)
                      .+..+   ++|++|++++|.+.     .+...+..+ ++|+.|++++|....    .++. .+..+++|++|++++|.+.
T Consensus       100 ~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~l~  178 (319)
T cd00116         100 VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK-ALRANRDLKELNLANNGIG  178 (319)
T ss_pred             HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH-HHHhCCCcCEEECcCCCCc
Confidence            22222   23555555555544     122233444 555666665543321    1111 1334455666666555542


Q ss_pred             cccccccccccccccccccCCCCccEEEeecCCC
Q 036269          193 WQFENEDDSRSNAKFIELGALSRLTSLHIDIPEG  226 (623)
Q Consensus       193 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  226 (623)
                      ...       ....+..+...++|+.|++++|.+
T Consensus       179 ~~~-------~~~l~~~l~~~~~L~~L~L~~n~i  205 (319)
T cd00116         179 DAG-------IRALAEGLKANCNLEVLDLNNNGL  205 (319)
T ss_pred             hHH-------HHHHHHHHHhCCCCCEEeccCCcc
Confidence            100       011222334445666666665543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.25  E-value=1.7e-12  Score=129.60  Aligned_cols=57  Identities=25%  Similarity=0.197  Sum_probs=30.5

Q ss_pred             EEccCCCCC-CCChhhHhCCCcccEEEccCCccccc--CCCchhhhccccCcEEeccCCc
Q 036269           63 LFLQKNDLL-DIPDPFFQGMKDLKVLDLGGSGVFSL--FSLPSSLSFLINLRTLSLHDCQ  119 (623)
Q Consensus        63 L~l~~~~~~-~l~~~~~~~l~~Lr~L~l~~~~~~~~--~~lp~~~~~l~~L~~L~l~~~~  119 (623)
                      |+|.++.+. .--..+|..++.|++|+++++.++..  ..++..+...++++.++++++.
T Consensus         3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~   62 (319)
T cd00116           3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNE   62 (319)
T ss_pred             cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccc
Confidence            455555554 11123356666677777777766310  1233444555666777766665

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.20  E-value=1.8e-11  Score=106.89  Aligned_cols=124  Identities=27%  Similarity=0.351  Sum_probs=40.6

Q ss_pred             CCCCCCCcEEEcccCCcccccccC-CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhh-hcccc
Q 036269           32 INTFEDLTGISLMFNDIHEVHEGL-QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSL-SFLIN  109 (623)
Q Consensus        32 ~~~~~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~-~~l~~  109 (623)
                      .....+++.|++.++.|+.+.... .+.+|+.|++++|.+.++..  +..+++|++|++++|.+   ..+...+ ..+++
T Consensus        15 ~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N~I---~~i~~~l~~~lp~   89 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNNRI---SSISEGLDKNLPN   89 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS------S-CHHHHHH-TT
T ss_pred             cccccccccccccccccccccchhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCCCC---CccccchHHhCCc
Confidence            333455677777777777665444 46677777777777776665  56777777777777777   4554444 35677


Q ss_pred             CcEEeccCCcCCCCc---ccccCCcCCcEEEcCCCCCcccc----ccccCCCccCEEec
Q 036269          110 LRTLSLHDCQHFGDL---SLIGELSLLEILDLSESDVSEIP----VSFGRLGHLRLLDL  161 (623)
Q Consensus       110 L~~L~l~~~~~l~~i---~~~~~l~~L~~L~l~~~~i~~lp----~~i~~l~~L~~L~l  161 (623)
                      |+.|++++|. +.++   ..+..+++|++|++.+|.++.-+    ..+..+|+|+.||-
T Consensus        90 L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   90 LQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             --EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             CCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            7777777776 6444   45566677777777777665333    13344555555544

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.11  E-value=8.2e-12  Score=123.04  Aligned_cols=191  Identities=26%  Similarity=0.348  Sum_probs=160.6

Q ss_pred             ecCCCCCCCCCCC---CCCCCcEEEcccCCcccccccC-CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccc
Q 036269           21 KAGVELKDWPSIN---TFEDLTGISLMFNDIHEVHEGL-QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFS   96 (623)
Q Consensus        21 ~~~~~~~~~~~~~---~~~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~   96 (623)
                      ..+..++++|--+   .+..-..++++.|.+..+|... -+..|..+.+.+|.+..+|..+ ..+..|.+|+++.|++  
T Consensus        57 Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i-~~L~~lt~l~ls~Nql--  133 (722)
T KOG0532|consen   57 LSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAI-CNLEALTFLDLSSNQL--  133 (722)
T ss_pred             cccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhh-hhhhHHHHhhhccchh--
Confidence            3345667776322   2233445888999999999877 7788999999999999888876 8999999999999999  


Q ss_pred             cCCCchhhhccccCcEEeccCCcCCCCc-ccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhh
Q 036269           97 LFSLPSSLSFLINLRTLSLHDCQHFGDL-SLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVL  175 (623)
Q Consensus        97 ~~~lp~~~~~l~~L~~L~l~~~~~l~~i-~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~  175 (623)
                       ..+|..++.|+ |++|.+++|+ ++.+ ..++.+..|..||.+.|.+..+|..++.+..|+.|+++. +.+..+|.+ +
T Consensus       134 -S~lp~~lC~lp-Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrR-n~l~~lp~E-l  208 (722)
T KOG0532|consen  134 -SHLPDGLCDLP-LKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRR-NHLEDLPEE-L  208 (722)
T ss_pred             -hcCChhhhcCc-ceeEEEecCc-cccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhh-hhhhhCCHH-H
Confidence             78999888876 8999999998 8777 778888999999999999999999999999999999999 667788887 5


Q ss_pred             hccccCcEEEecccccccccccccccccccccccccCCCCccEEEeecCCCccCCCc
Q 036269          176 SRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSD  232 (623)
Q Consensus       176 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  232 (623)
                      .. -.|..|+++.|++            ..+|..+.+|+.|+.|.+.+|.+..-|..
T Consensus       209 ~~-LpLi~lDfScNki------------s~iPv~fr~m~~Lq~l~LenNPLqSPPAq  252 (722)
T KOG0532|consen  209 CS-LPLIRLDFSCNKI------------SYLPVDFRKMRHLQVLQLENNPLQSPPAQ  252 (722)
T ss_pred             hC-CceeeeecccCce------------eecchhhhhhhhheeeeeccCCCCCChHH
Confidence            64 4588999999998            57888999999999999999998766654

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.05  E-value=2e-10  Score=100.42  Aligned_cols=107  Identities=27%  Similarity=0.326  Sum_probs=26.9

Q ss_pred             hCCCcccEEEccCCcccccCCCchhhh-ccccCcEEeccCCcCCCCcccccCCcCCcEEEcCCCCCccccccc-cCCCcc
Q 036269           79 QGMKDLKVLDLGGSGVFSLFSLPSSLS-FLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSF-GRLGHL  156 (623)
Q Consensus        79 ~~l~~Lr~L~l~~~~~~~~~~lp~~~~-~l~~L~~L~l~~~~~l~~i~~~~~l~~L~~L~l~~~~i~~lp~~i-~~l~~L  156 (623)
                      .+..++|+|++.++.+   ..+. .++ .+.+|+.|++++|. ++.++.+..+++|++|++++|.++.+...+ ..+++|
T Consensus        16 ~n~~~~~~L~L~~n~I---~~Ie-~L~~~l~~L~~L~Ls~N~-I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L   90 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQI---STIE-NLGATLDKLEVLDLSNNQ-ITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNL   90 (175)
T ss_dssp             ------------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--SS---S-CHHHHHH-TT-
T ss_pred             cccccccccccccccc---cccc-chhhhhcCCCEEECCCCC-CccccCccChhhhhhcccCCCCCCccccchHHhCCcC
Confidence            3445566666666666   3322 233 35566666666666 655555556666666666666666554333 245566


Q ss_pred             CEEeccCCCCCCcCch-hhhhccccCcEEEeccccc
Q 036269          157 RLLDLTDCYNLELIPR-GVLSRLRKLEELYMSKTFC  191 (623)
Q Consensus       157 ~~L~l~~~~~~~~l~~-~~~~~l~~L~~L~l~~~~~  191 (623)
                      +.|++++ +.+.++.. ..+..+++|+.|++.+|.+
T Consensus        91 ~~L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NPv  125 (175)
T PF14580_consen   91 QELYLSN-NKISDLNELEPLSSLPKLRVLSLEGNPV  125 (175)
T ss_dssp             -EEE-TT-S---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred             CEEECcC-CcCCChHHhHHHHcCCCcceeeccCCcc
Confidence            6666655 33332221 1144555555555555554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.98  E-value=1e-10  Score=106.35  Aligned_cols=133  Identities=24%  Similarity=0.294  Sum_probs=76.1

Q ss_pred             CCcccEEEccCCcccccCCCchhhhccccCcEEeccCCcCCCCcccccCCcCCcEEEcCCCCCccccccccCCCccCEEe
Q 036269           81 MKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLD  160 (623)
Q Consensus        81 l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~i~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~  160 (623)
                      ++.|..+|+++|.+   ..+-.++.-.|.+|.|++++|. +..+..+..+++|+.||+++|.++++-..-.++-|.+.|.
T Consensus       283 Wq~LtelDLS~N~I---~~iDESvKL~Pkir~L~lS~N~-i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~  358 (490)
T KOG1259|consen  283 WQELTELDLSGNLI---TQIDESVKLAPKLRRLILSQNR-IRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLK  358 (490)
T ss_pred             Hhhhhhccccccch---hhhhhhhhhccceeEEeccccc-eeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeee
Confidence            34566666666666   4555555555666666666666 5555445666666666666666665544444556666666


Q ss_pred             ccCCCCCCcCchhhhhccccCcEEEecccccccccccccccccccccccccCCCCccEEEeecCCCccCC
Q 036269          161 LTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMP  230 (623)
Q Consensus       161 l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  230 (623)
                      +.+ +.+..+..  ++++-+|..|++++|.+.          .-.....+++++.|+.+.+.+|.+..++
T Consensus       359 La~-N~iE~LSG--L~KLYSLvnLDl~~N~Ie----------~ldeV~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  359 LAQ-NKIETLSG--LRKLYSLVNLDLSSNQIE----------ELDEVNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             hhh-hhHhhhhh--hHhhhhheeccccccchh----------hHHHhcccccccHHHHHhhcCCCccccc
Confidence            666 45555543  556666666666666552          1223445566666666666555544433

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.95  E-value=1.1e-10  Score=105.99  Aligned_cols=126  Identities=21%  Similarity=0.238  Sum_probs=67.8

Q ss_pred             CCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCCcCCCCc-ccccCCcCCcEE
Q 036269           58 PRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDL-SLIGELSLLEIL  136 (623)
Q Consensus        58 ~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~i-~~~~~l~~L~~L  136 (623)
                      ..|+.+|+++|.+..+..++ .-.|++|+|++++|.+.   .+. .+..+++|+.||+++|. +..+ ..-.++-|.+.|
T Consensus       284 q~LtelDLS~N~I~~iDESv-KL~Pkir~L~lS~N~i~---~v~-nLa~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL  357 (490)
T KOG1259|consen  284 QELTELDLSGNLITQIDESV-KLAPKLRRLILSQNRIR---TVQ-NLAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTL  357 (490)
T ss_pred             hhhhhccccccchhhhhhhh-hhccceeEEecccccee---eeh-hhhhcccceEeecccch-hHhhhhhHhhhcCEeee
Confidence            44556666666665554443 45566666666666552   222 24555666666666665 5444 222345555666


Q ss_pred             EcCCCCCccccccccCCCccCEEeccCCCCCCcCc-hhhhhccccCcEEEeccccc
Q 036269          137 DLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIP-RGVLSRLRKLEELYMSKTFC  191 (623)
Q Consensus       137 ~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~-~~~~~~l~~L~~L~l~~~~~  191 (623)
                      .+++|.+..+. +++++.+|..|++++ +.+..+. ..-+++++.|+++.+.+|.+
T Consensus       358 ~La~N~iE~LS-GL~KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NPl  411 (490)
T KOG1259|consen  358 KLAQNKIETLS-GLRKLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGNPL  411 (490)
T ss_pred             ehhhhhHhhhh-hhHhhhhheeccccc-cchhhHHHhcccccccHHHHHhhcCCCc
Confidence            66666555542 555666666666666 3333332 11256666666666666655

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.94  E-value=6.5e-11  Score=116.81  Aligned_cols=189  Identities=20%  Similarity=0.274  Sum_probs=158.4

Q ss_pred             EEcccCCcccccccC---CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccC
Q 036269           41 ISLMFNDIHEVHEGL---QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHD  117 (623)
Q Consensus        41 L~l~~~~~~~l~~~~---~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~  117 (623)
                      |.+++..+..+|...   .+..-...+++.|++..+|..+ ..|-.|..+.++.|.+   ..+|..+.++..|.+|+++.
T Consensus        55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~-~~f~~Le~liLy~n~~---r~ip~~i~~L~~lt~l~ls~  130 (722)
T KOG0532|consen   55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEA-CAFVSLESLILYHNCI---RTIPEAICNLEALTFLDLSS  130 (722)
T ss_pred             cccccchhhcCCCccccccccchhhhhccccccccCchHH-HHHHHHHHHHHHhccc---eecchhhhhhhHHHHhhhcc
Confidence            445555555665544   4444556789999999999886 7889999999999999   89999999999999999999


Q ss_pred             CcCCCCc-ccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecccccccccc
Q 036269          118 CQHFGDL-SLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFE  196 (623)
Q Consensus       118 ~~~l~~i-~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~  196 (623)
                      |. +..+ ..++. --|+.|-+++|+++.+|..++.+.+|..|+.+. +.+..+|.. ++.+.+|+.|.+..|.+     
T Consensus       131 Nq-lS~lp~~lC~-lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~-nei~slpsq-l~~l~slr~l~vrRn~l-----  201 (722)
T KOG0532|consen  131 NQ-LSHLPDGLCD-LPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSK-NEIQSLPSQ-LGYLTSLRDLNVRRNHL-----  201 (722)
T ss_pred             ch-hhcCChhhhc-CcceeEEEecCccccCCcccccchhHHHhhhhh-hhhhhchHH-hhhHHHHHHHHHhhhhh-----
Confidence            98 7666 34444 358999999999999999999999999999998 567788887 89999999999999887     


Q ss_pred             cccccccccccccccCCCCccEEEeecCCCccCCCc-ccccCccEEEEEeCCCCC
Q 036269          197 NEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSD-MSFQNLTSFSITIGGPEE  250 (623)
Q Consensus       197 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~  250 (623)
                             ...+.++..++ |..||++.|.+..+|.. ..+..|+.|.+.+|+...
T Consensus       202 -------~~lp~El~~Lp-Li~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  202 -------EDLPEELCSLP-LIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             -------hhCCHHHhCCc-eeeeecccCceeecchhhhhhhhheeeeeccCCCCC
Confidence                   46778888665 88999999999999988 899999999999887543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.90  E-value=1.6e-09  Score=111.33  Aligned_cols=190  Identities=31%  Similarity=0.369  Sum_probs=138.1

Q ss_pred             EEEcccCCc-ccccccCCCCCcceEEccCCCCCCCChhhHhCCC-cccEEEccCCcccccCCCchhhhccccCcEEeccC
Q 036269           40 GISLMFNDI-HEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMK-DLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHD  117 (623)
Q Consensus        40 ~L~l~~~~~-~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~-~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~  117 (623)
                      .+....+.+ ..+......+.++.|++.+|.+.++++.. ...+ +|+.|++++|.+   ..+|..+..+++|+.|++++
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~-~~~~~nL~~L~l~~N~i---~~l~~~~~~l~~L~~L~l~~  172 (394)
T COG4886          97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLI-GLLKSNLKELDLSDNKI---ESLPSPLRNLPNLKNLDLSF  172 (394)
T ss_pred             eeeccccccccCchhhhcccceeEEecCCcccccCcccc-ccchhhcccccccccch---hhhhhhhhccccccccccCC
Confidence            356666655 33333335567888888888888877754 4453 888888888888   67777778888888888888


Q ss_pred             CcCCCCccccc-CCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecccccccccc
Q 036269          118 CQHFGDLSLIG-ELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFE  196 (623)
Q Consensus       118 ~~~l~~i~~~~-~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~  196 (623)
                      |+ +.+++... .+++|+.|++++|.+..+|..+.....|+++.++++..+ ..+.. +.++.++..+.+.++.+     
T Consensus       173 N~-l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~-~~~~~~l~~l~l~~n~~-----  244 (394)
T COG4886         173 ND-LSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII-ELLSS-LSNLKNLSGLELSNNKL-----  244 (394)
T ss_pred             ch-hhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcce-ecchh-hhhcccccccccCCcee-----
Confidence            88 87774433 788888888888888888877777777888888874333 34433 67778888887777665     


Q ss_pred             cccccccccccccccCCCCccEEEeecCCCccCCCcccccCccEEEEEeCCC
Q 036269          197 NEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSDMSFQNLTSFSITIGGP  248 (623)
Q Consensus       197 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~  248 (623)
                             ...+..++.+.+++.|+++.|.+..++......+++.++++++..
T Consensus       245 -------~~~~~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n~~  289 (394)
T COG4886         245 -------EDLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSL  289 (394)
T ss_pred             -------eeccchhccccccceeccccccccccccccccCccCEEeccCccc
Confidence                   233566778888888888888887777666777888888776553

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.86  E-value=2.8e-09  Score=109.52  Aligned_cols=185  Identities=30%  Similarity=0.387  Sum_probs=152.2

Q ss_pred             CCCCCCCCCCCCcEEEcccCCcccccccCCCC--CcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhh
Q 036269           27 KDWPSINTFEDLTGISLMFNDIHEVHEGLQCP--RLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSL  104 (623)
Q Consensus        27 ~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~--~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~  104 (623)
                      .+...+..+..++.+++..+.++++++.....  +|+.|++++|.+.+++.. ...++.|+.|++++|.+   ..+|...
T Consensus       107 ~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~~N~l---~~l~~~~  182 (394)
T COG4886         107 SNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFNDL---SDLPKLL  182 (394)
T ss_pred             cCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhh-hhccccccccccCCchh---hhhhhhh
Confidence            33444455677999999999999999988443  899999999999988644 48999999999999999   7888877


Q ss_pred             hccccCcEEeccCCcCCCCccc-ccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcE
Q 036269          105 SFLINLRTLSLHDCQHFGDLSL-IGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEE  183 (623)
Q Consensus       105 ~~l~~L~~L~l~~~~~l~~i~~-~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~  183 (623)
                      ...+.|+.|++++|. +.+++. .+...+|+++.+++|.+...+..+.++.++..+.+.+ +.+..++.. ++.+..++.
T Consensus       183 ~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~-n~~~~~~~~-~~~l~~l~~  259 (394)
T COG4886         183 SNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSN-NKLEDLPES-IGNLSNLET  259 (394)
T ss_pred             hhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCC-ceeeeccch-hccccccce
Confidence            789999999999999 888844 4567779999999998777788899999999999777 555555543 889999999


Q ss_pred             EEecccccccccccccccccccccccccCCCCccEEEeecCCCccCCC
Q 036269          184 LYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPS  231 (623)
Q Consensus       184 L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  231 (623)
                      |++++|.+.            .+. .++.+.+++.|+++++.....+.
T Consensus       260 L~~s~n~i~------------~i~-~~~~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         260 LDLSNNQIS------------SIS-SLGSLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             ecccccccc------------ccc-cccccCccCEEeccCccccccch
Confidence            999999872            222 38889999999999987655443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.86  E-value=4.6e-10  Score=107.50  Aligned_cols=153  Identities=22%  Similarity=0.216  Sum_probs=68.3

Q ss_pred             CCCCcEEEcccCCcccccc--cC-CCCCcceEEccCCCCC--CCChhhHhCCCcccEEEccCCcccccCCCchh--hhcc
Q 036269           35 FEDLTGISLMFNDIHEVHE--GL-QCPRLQALFLQKNDLL--DIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSS--LSFL  107 (623)
Q Consensus        35 ~~~l~~L~l~~~~~~~l~~--~~-~~~~L~~L~l~~~~~~--~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~--~~~l  107 (623)
                      +++|+.+.+..+.+...+.  -. .|++++.|+|++|-+.  ..-..+...+|+|+.|+++.|.+.   ....+  -..+
T Consensus       120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~---~~~~s~~~~~l  196 (505)
T KOG3207|consen  120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLS---NFISSNTTLLL  196 (505)
T ss_pred             HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccccc---CCccccchhhh
Confidence            3455555555554443331  11 4555555555555544  111223345555555555555442   11111  1234


Q ss_pred             ccCcEEeccCCcCC--CCc-ccccCCcCCcEEEcCCCC-CccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcE
Q 036269          108 INLRTLSLHDCQHF--GDL-SLIGELSLLEILDLSESD-VSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEE  183 (623)
Q Consensus       108 ~~L~~L~l~~~~~l--~~i-~~~~~l~~L~~L~l~~~~-i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~  183 (623)
                      ++|+.|.++.|. +  .++ .....+++|+.|++..|. +.........++.|+.|++++++.+..-.....+.++.|+.
T Consensus       197 ~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~  275 (505)
T KOG3207|consen  197 SHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ  275 (505)
T ss_pred             hhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhh
Confidence            555555555555 4  223 334445555555555552 22111222334455555555544333221112445555555


Q ss_pred             EEeccccc
Q 036269          184 LYMSKTFC  191 (623)
Q Consensus       184 L~l~~~~~  191 (623)
                      |+++.+.+
T Consensus       276 Lnls~tgi  283 (505)
T KOG3207|consen  276 LNLSSTGI  283 (505)
T ss_pred             hhccccCc
Confidence            55555443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.79  E-value=1e-09  Score=105.13  Aligned_cols=192  Identities=17%  Similarity=0.170  Sum_probs=126.7

Q ss_pred             ccccccC-CCCCcceEEccCCCCCCCCh-hhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCCcCCCCc--
Q 036269           49 HEVHEGL-QCPRLQALFLQKNDLLDIPD-PFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDL--  124 (623)
Q Consensus        49 ~~l~~~~-~~~~L~~L~l~~~~~~~l~~-~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~i--  124 (623)
                      +++.+.- ++++|+...|+++.....+. .....|+++|.||++.|-+.++..+-.....+++|+.|+++.|. +..+  
T Consensus       111 Dki~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~~  189 (505)
T KOG3207|consen  111 DKIAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNR-LSNFIS  189 (505)
T ss_pred             HHHHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccc-ccCCcc
Confidence            3443333 67788888888888764442 23477888888888888765333444455678888888888887 6443  


Q ss_pred             -ccccCCcCCcEEEcCCCCCc--cccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccccccccccccccc
Q 036269          125 -SLIGELSLLEILDLSESDVS--EIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDS  201 (623)
Q Consensus       125 -~~~~~l~~L~~L~l~~~~i~--~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  201 (623)
                       ..-..+++|+.|.++.|+++  .+-.....+|+|..|++..|..+..-... ...+..|+.|++++|.+.         
T Consensus       190 s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li---------  259 (505)
T KOG3207|consen  190 SNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLI---------  259 (505)
T ss_pred             ccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCccc---------
Confidence             22336678888888888887  33334456788888888886433322222 345677888888887663         


Q ss_pred             ccccccccccCCCCccEEEeecCCCccCCC--c------ccccCccEEEEEeCCCCCCC
Q 036269          202 RSNAKFIELGALSRLTSLHIDIPEGEIMPS--D------MSFQNLTSFSITIGGPEEVP  252 (623)
Q Consensus       202 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~------~~~~~L~~L~l~~~~~~~~~  252 (623)
                       .-.....++.++.|+.|+++.+++..+..  .      ..+++|+.|++..+....|+
T Consensus       260 -~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~  317 (505)
T KOG3207|consen  260 -DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWR  317 (505)
T ss_pred             -ccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccccc
Confidence             12223456778888888888877544422  1      56777888888777765554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.49  E-value=7e-08  Score=90.33  Aligned_cols=87  Identities=24%  Similarity=0.299  Sum_probs=51.5

Q ss_pred             CCCCCCcEEEcccCCcc-----cccccC-CCCCcceEEccCCCCC----CCChhh------HhCCCcccEEEccCCcccc
Q 036269           33 NTFEDLTGISLMFNDIH-----EVHEGL-QCPRLQALFLQKNDLL----DIPDPF------FQGMKDLKVLDLGGSGVFS   96 (623)
Q Consensus        33 ~~~~~l~~L~l~~~~~~-----~l~~~~-~~~~L~~L~l~~~~~~----~l~~~~------~~~l~~Lr~L~l~~~~~~~   96 (623)
                      ....+++.+++++|.++     .+.+.+ +.+.|+.-++++-...    .+|..+      +.++++|++|+||.|.+. 
T Consensus        27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G-  105 (382)
T KOG1909|consen   27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG-  105 (382)
T ss_pred             cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC-
Confidence            44567788888888774     233333 4566777776543221    333322      356677777777777775 


Q ss_pred             cCCCchh----hhccccCcEEeccCCcCCC
Q 036269           97 LFSLPSS----LSFLINLRTLSLHDCQHFG  122 (623)
Q Consensus        97 ~~~lp~~----~~~l~~L~~L~l~~~~~l~  122 (623)
                       ...+..    +.+++.|+.|.+.+|. ++
T Consensus       106 -~~g~~~l~~ll~s~~~L~eL~L~N~G-lg  133 (382)
T KOG1909|consen  106 -PKGIRGLEELLSSCTDLEELYLNNCG-LG  133 (382)
T ss_pred             -ccchHHHHHHHHhccCHHHHhhhcCC-CC
Confidence             333332    3456777777777776 54

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.49  E-value=4.8e-09  Score=95.58  Aligned_cols=65  Identities=22%  Similarity=0.160  Sum_probs=39.7

Q ss_pred             cCCCccEEEEeecCCcccccchhHHHhccccceEEEeccccceeeeeccceeccccccccccCccEEecCCccc
Q 036269          372 CLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEIERVNIAKEETELFSSLEKLTLIGLPR  445 (623)
Q Consensus       372 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~  445 (623)
                      .+|+|..|++++|..+++.... .+.+++.|++|.++.|..|---    -    --++.+.|+|.+|++.+|-.
T Consensus       311 rcp~l~~LDLSD~v~l~~~~~~-~~~kf~~L~~lSlsRCY~i~p~----~----~~~l~s~psl~yLdv~g~vs  375 (419)
T KOG2120|consen  311 RCPNLVHLDLSDSVMLKNDCFQ-EFFKFNYLQHLSLSRCYDIIPE----T----LLELNSKPSLVYLDVFGCVS  375 (419)
T ss_pred             hCCceeeeccccccccCchHHH-HHHhcchheeeehhhhcCCChH----H----eeeeccCcceEEEEeccccC
Confidence            4567777777777666653332 3667777777777777664210    0    11345677777787777743

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.48  E-value=7.1e-09  Score=94.48  Aligned_cols=173  Identities=20%  Similarity=0.126  Sum_probs=82.1

Q ss_pred             cceEEccCCCCC-CCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCCcCCCCc---ccccCCcCCcE
Q 036269           60 LQALFLQKNDLL-DIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDL---SLIGELSLLEI  135 (623)
Q Consensus        60 L~~L~l~~~~~~-~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~i---~~~~~l~~L~~  135 (623)
                      |++|||+...++ .-...+++.|.+|+-|++.|+.+.  +.+-..+.+-.+|+.|+++.|..+++.   -.+..+..|..
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~Ld--D~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLD--DPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccC--cHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            555666655555 222334455666666666666553  334344555556666666666545433   23455566666


Q ss_pred             EEcCCCCCcc-----ccccccCCCccCEEeccCCCCCC--cCchhhhhccccCcEEEecccccccccccccccccccccc
Q 036269          136 LDLSESDVSE-----IPVSFGRLGHLRLLDLTDCYNLE--LIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFI  208 (623)
Q Consensus       136 L~l~~~~i~~-----lp~~i~~l~~L~~L~l~~~~~~~--~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  208 (623)
                      |+++.|....     +-..++  ++|..|+++||..--  .--..+..++++|.+|+++.|.-.          .+..+.
T Consensus       265 LNlsWc~l~~~~Vtv~V~his--e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l----------~~~~~~  332 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHIS--ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVML----------KNDCFQ  332 (419)
T ss_pred             cCchHhhccchhhhHHHhhhc--hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccccc----------CchHHH
Confidence            6666654331     011111  345555555542111  111112345556666666554321          223344


Q ss_pred             cccCCCCccEEEeecCCCc---cCCCcccccCccEEEEEeC
Q 036269          209 ELGALSRLTSLHIDIPEGE---IMPSDMSFQNLTSFSITIG  246 (623)
Q Consensus       209 ~l~~l~~L~~L~l~~~~~~---~~~~~~~~~~L~~L~l~~~  246 (623)
                      .+.+++.|++|.++.|..-   .+-.....+.|.+|++.++
T Consensus       333 ~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  333 EFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             HHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence            4555555666655555420   0111144555666665544

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.48  E-value=8e-08  Score=68.79  Aligned_cols=59  Identities=37%  Similarity=0.591  Sum_probs=37.1

Q ss_pred             CCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCc-hhhhccccCcEEeccCCc
Q 036269           58 PRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLP-SSLSFLINLRTLSLHDCQ  119 (623)
Q Consensus        58 ~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~  119 (623)
                      ++|+.|++++|.+..++..+|.++++|++|++++|.+   ..++ ..|..+++|++|++++|.
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l---~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNL---TSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSE---SEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCcc---CccCHHHHcCCCCCCEEeCcCCc
Confidence            3566666666666666666666666666666666666   3444 345666666666666664

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.41  E-value=1.8e-07  Score=66.90  Aligned_cols=59  Identities=29%  Similarity=0.497  Sum_probs=54.0

Q ss_pred             CCCcEEEcccCCcccccccC--CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcc
Q 036269           36 EDLTGISLMFNDIHEVHEGL--QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGV   94 (623)
Q Consensus        36 ~~l~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~   94 (623)
                      ++|+.|++++|.++.+++..  .+++|++|++++|.+..+++..|.++++|++|++++|.+
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            46899999999999998755  899999999999999988888899999999999999874

...

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.38  E-value=8.9e-08  Score=89.63  Aligned_cols=185  Identities=19%  Similarity=0.140  Sum_probs=103.4

Q ss_pred             CCCCcceEEccCCCCC-CCC---hhhHhCCCcccEEEccCCcccccC--CCch---------hhhccccCcEEeccCCcC
Q 036269           56 QCPRLQALFLQKNDLL-DIP---DPFFQGMKDLKVLDLGGSGVFSLF--SLPS---------SLSFLINLRTLSLHDCQH  120 (623)
Q Consensus        56 ~~~~L~~L~l~~~~~~-~l~---~~~~~~l~~Lr~L~l~~~~~~~~~--~lp~---------~~~~l~~L~~L~l~~~~~  120 (623)
                      .+++|+.|+||+|.+. .-+   ..+++.+..|++|.+.+|.+....  .+..         ....-++||+++..+|. 
T Consensus        90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr-  168 (382)
T KOG1909|consen   90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR-  168 (382)
T ss_pred             cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc-
Confidence            5667788888777765 211   233466777777777777663100  0111         12234577777777776 


Q ss_pred             CCCc------ccccCCcCCcEEEcCCCCCc-----cccccccCCCccCEEeccCCCCCCcCc---hhhhhccccCcEEEe
Q 036269          121 FGDL------SLIGELSLLEILDLSESDVS-----EIPVSFGRLGHLRLLDLTDCYNLELIP---RGVLSRLRKLEELYM  186 (623)
Q Consensus       121 l~~i------~~~~~l~~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L~l~~~~~~~~l~---~~~~~~l~~L~~L~l  186 (623)
                      +.+-      ..+...+.|+.+.+..|.|.     -+...+..+++|+.|++++|.+...-.   ...+..+++|+++++
T Consensus       169 len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l  248 (382)
T KOG1909|consen  169 LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNL  248 (382)
T ss_pred             cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecc
Confidence            5322      34556677777777777664     123456677777777777744332111   112455677777777


Q ss_pred             cccccccccccccccccccccccc-cCCCCccEEEeecCCCccCC-----Cc-ccccCccEEEEEeCCC
Q 036269          187 SKTFCHWQFENEDDSRSNAKFIEL-GALSRLTSLHIDIPEGEIMP-----SD-MSFQNLTSFSITIGGP  248 (623)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~-----~~-~~~~~L~~L~l~~~~~  248 (623)
                      +.|.+...-       ...+...+ ...++|+.+.+.+|....-.     .. ...+.|.+|.++.|..
T Consensus       249 ~dcll~~~G-------a~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  249 GDCLLENEG-------AIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             ccccccccc-------HHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            777653211       12222222 23567777777777632111     11 3466777777777654

>PLN03150 hypothetical protein; Provisional

Probab=98.34  E-value=1.5e-06  Score=93.68  Aligned_cols=106  Identities=25%  Similarity=0.380  Sum_probs=86.1

Q ss_pred             cccEEEccCCcccccCCCchhhhccccCcEEeccCCcCCC-Cc-ccccCCcCCcEEEcCCCCCc-cccccccCCCccCEE
Q 036269           83 DLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFG-DL-SLIGELSLLEILDLSESDVS-EIPVSFGRLGHLRLL  159 (623)
Q Consensus        83 ~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~-~i-~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L  159 (623)
                      .++.|+|+++.+.  +.+|..+..+++|+.|++++|. +. .+ ..++.+++|+.|++++|.++ .+|..++++++|++|
T Consensus       419 ~v~~L~L~~n~L~--g~ip~~i~~L~~L~~L~Ls~N~-l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L  495 (623)
T PLN03150        419 FIDGLGLDNQGLR--GFIPNDISKLRHLQSINLSGNS-IRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRIL  495 (623)
T ss_pred             EEEEEECCCCCcc--ccCCHHHhCCCCCCEEECCCCc-ccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEE
Confidence            4788899998886  7888888899999999999988 74 45 57888999999999999888 788889999999999


Q ss_pred             eccCCCCCCcCchhhhhccccCcEEEeccccc
Q 036269          160 DLTDCYNLELIPRGVLSRLRKLEELYMSKTFC  191 (623)
Q Consensus       160 ~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~  191 (623)
                      ++++|...+.+|..+.....++..+++.+|..
T Consensus       496 ~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        496 NLNGNSLSGRVPAALGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             ECcCCcccccCChHHhhccccCceEEecCCcc
Confidence            99997777788876333345677888887754

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=98.33  E-value=3.3e-08  Score=104.85  Aligned_cols=119  Identities=17%  Similarity=0.146  Sum_probs=64.6

Q ss_pred             hhceeEeecccCCccccc--ccccccCccCccEEEEecc-cCceeecccccccccccccccceeecccCccccccccccc
Q 036269          292 LRSEILALGDVNDLENIV--SDLAHDGFNELMFLAIVGC-NEMKYLLNSLERTLRVTLLKLEWLMIVDNRNFVEICHGQL  368 (623)
Q Consensus       292 ~~L~~L~l~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~-~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~  368 (623)
                      ++|+.+.+.+|..+.+..  +..  ..++.|+.|+++++ ......+.. .......+++|+.|++.++..+++.....+
T Consensus       188 ~~L~~l~l~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~~~~~~L~~l~l~~~~~isd~~l~~l  264 (482)
T KOG1947|consen  188 PLLKRLSLSGCSKITDDSLDALA--LKCPNLEELDLSGCCLLITLSPLL-LLLLLSICRKLKSLDLSGCGLVTDIGLSAL  264 (482)
T ss_pred             chhhHhhhcccccCChhhHHHHH--hhCchhheecccCcccccccchhH-hhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence            677777777776665521  222  45677777777763 222211100 001233346677777776665444322111


Q ss_pred             CCCcCCCccEEEEeecCCcccccchhHHHhccccceEEEeccccce
Q 036269          369 PAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLV  414 (623)
Q Consensus       369 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~  414 (623)
                      . ..+++|+.|.+.+|..+++..-......+++|++|+++.|..++
T Consensus       265 ~-~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~  309 (482)
T KOG1947|consen  265 A-SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLT  309 (482)
T ss_pred             H-hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccch
Confidence            1 13567777776666665554444455666777777777766653

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.33  E-value=6.2e-08  Score=99.61  Aligned_cols=102  Identities=31%  Similarity=0.378  Sum_probs=44.9

Q ss_pred             CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCCcCCCCcccccCCcCCcE
Q 036269           56 QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEI  135 (623)
Q Consensus        56 ~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~i~~~~~l~~L~~  135 (623)
                      .+.+++.|++.+|.+..+... +..+++|++|++++|.++   .+. .+..++.|+.|++.+|. +..+..+..+..|+.
T Consensus        93 ~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~---~i~-~l~~l~~L~~L~l~~N~-i~~~~~~~~l~~L~~  166 (414)
T KOG0531|consen   93 KLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNKIT---KLE-GLSTLTLLKELNLSGNL-ISDISGLESLKSLKL  166 (414)
T ss_pred             cccceeeeeccccchhhcccc-hhhhhcchheeccccccc---ccc-chhhccchhhheeccCc-chhccCCccchhhhc
Confidence            344444555555544433321 134455555555555442   221 13334445555555554 444444444445555


Q ss_pred             EEcCCCCCcccccc-ccCCCccCEEeccC
Q 036269          136 LDLSESDVSEIPVS-FGRLGHLRLLDLTD  163 (623)
Q Consensus       136 L~l~~~~i~~lp~~-i~~l~~L~~L~l~~  163 (623)
                      +++++|.+..+... ...+.+++.+++.+
T Consensus       167 l~l~~n~i~~ie~~~~~~~~~l~~l~l~~  195 (414)
T KOG0531|consen  167 LDLSYNRIVDIENDELSELISLEELDLGG  195 (414)
T ss_pred             ccCCcchhhhhhhhhhhhccchHHHhccC
Confidence            55555544433321 24444444444444

>PLN03150 hypothetical protein; Provisional

Probab=98.33  E-value=1.4e-06  Score=93.85  Aligned_cols=104  Identities=23%  Similarity=0.264  Sum_probs=87.3

Q ss_pred             cCcEEeccCCcCCC-Cc-ccccCCcCCcEEEcCCCCCc-cccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEE
Q 036269          109 NLRTLSLHDCQHFG-DL-SLIGELSLLEILDLSESDVS-EIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELY  185 (623)
Q Consensus       109 ~L~~L~l~~~~~l~-~i-~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~  185 (623)
                      .++.|+++++. +. .+ ..++.+++|+.|++++|.+. .+|..++.+++|+.|++++|...+.+|.. ++++++|+.|+
T Consensus       419 ~v~~L~L~~n~-L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~  496 (623)
T PLN03150        419 FIDGLGLDNQG-LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILN  496 (623)
T ss_pred             EEEEEECCCCC-ccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEE
Confidence            47889999998 74 44 67899999999999999998 88989999999999999997777788876 89999999999


Q ss_pred             ecccccccccccccccccccccccccCC-CCccEEEeecCC
Q 036269          186 MSKTFCHWQFENEDDSRSNAKFIELGAL-SRLTSLHIDIPE  225 (623)
Q Consensus       186 l~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~  225 (623)
                      +++|.+.           ..+|..++.. .++..+++.+|.
T Consensus       497 Ls~N~l~-----------g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        497 LNGNSLS-----------GRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CcCCccc-----------ccCChHHhhccccCceEEecCCc
Confidence            9999874           4556666553 466788888876

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.29  E-value=9.4e-08  Score=98.28  Aligned_cols=175  Identities=26%  Similarity=0.314  Sum_probs=128.7

Q ss_pred             CCCCCCCcEEEcccCCcccccc-cCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccC
Q 036269           32 INTFEDLTGISLMFNDIHEVHE-GLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINL  110 (623)
Q Consensus        32 ~~~~~~l~~L~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L  110 (623)
                      +..+.++..+++..|.+..+.. ...+++|+.|++++|.++++..  +..++.|+.|++++|.+.   .+. .+..++.|
T Consensus        91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~---~~~-~~~~l~~L  164 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLIS---DIS-GLESLKSL  164 (414)
T ss_pred             cccccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhheeccCcch---hcc-CCccchhh
Confidence            4667889999999999999988 4489999999999999998876  688999999999999984   433 24458999


Q ss_pred             cEEeccCCcCCCCccc--ccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhcccc--CcEEEe
Q 036269          111 RTLSLHDCQHFGDLSL--IGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRK--LEELYM  186 (623)
Q Consensus       111 ~~L~l~~~~~l~~i~~--~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~--L~~L~l  186 (623)
                      +.+++++|. +..+..  ...+.+++.+++.+|.+..+. .+..+..+..+++.. +.+..+..  +..+..  |+.+++
T Consensus       165 ~~l~l~~n~-i~~ie~~~~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~-n~i~~~~~--l~~~~~~~L~~l~l  239 (414)
T KOG0531|consen  165 KLLDLSYNR-IVDIENDELSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLD-NKISKLEG--LNELVMLHLRELYL  239 (414)
T ss_pred             hcccCCcch-hhhhhhhhhhhccchHHHhccCCchhccc-chHHHHHHHHhhccc-ccceeccC--cccchhHHHHHHhc
Confidence            999999999 887866  688999999999999887543 344444555556665 33333322  233333  788888


Q ss_pred             cccccccccccccccccccccccccCCCCccEEEeecCCCccC
Q 036269          187 SKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIM  229 (623)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  229 (623)
                      .++.+.            .....+..+..+..+++..+....+
T Consensus       240 ~~n~i~------------~~~~~~~~~~~l~~l~~~~n~~~~~  270 (414)
T KOG0531|consen  240 SGNRIS------------RSPEGLENLKNLPVLDLSSNRISNL  270 (414)
T ss_pred             ccCccc------------cccccccccccccccchhhcccccc
Confidence            887762            1214556677777777777665443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=98.27  E-value=6.8e-08  Score=102.51  Aligned_cols=144  Identities=22%  Similarity=0.221  Sum_probs=85.6

Q ss_pred             CccCccEEEEecccCceeecccccccccccccccceeecccC-ccccccccccc-CCCcCCCccEEEEeecCCcccccch
Q 036269          316 GFNELMFLAIVGCNEMKYLLNSLERTLRVTLLKLEWLMIVDN-RNFVEICHGQL-PAGCLSNVKRLDVRDCGSVLKILPS  393 (623)
Q Consensus       316 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~-~~l~~~~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~  393 (623)
                      .+++|+.+.+.+|..+....-.   .....++.|+.|+++++ ........... -...+++|+.++++.|..+++..-.
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~  262 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLD---ALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLS  262 (482)
T ss_pred             hCchhhHhhhcccccCChhhHH---HHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHH
Confidence            3678888888888766652200   14556788888888873 22221110000 1124588888888888777765555


Q ss_pred             hHHHhccccceEEEeccccceeeeeccceeccccccccccCccEEecCCccchhhcccCCCcccccCCccEEEEEcC
Q 036269          394 HLVQSFQNLQRLRVEGCELLVSVFEIERVNIAKEETELFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFC  470 (623)
Q Consensus       394 ~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~L~~L~l~~C  470 (623)
                      .....+++|+.|.+.+|..+++.    |+   ......+++|++|++++|..+++-.. ......+++|++|.+..+
T Consensus       263 ~l~~~c~~L~~L~l~~c~~lt~~----gl---~~i~~~~~~L~~L~l~~c~~~~d~~l-~~~~~~c~~l~~l~~~~~  331 (482)
T KOG1947|consen  263 ALASRCPNLETLSLSNCSNLTDE----GL---VSIAERCPSLRELDLSGCHGLTDSGL-EALLKNCPNLRELKLLSL  331 (482)
T ss_pred             HHHhhCCCcceEccCCCCccchh----HH---HHHHHhcCcccEEeeecCccchHHHH-HHHHHhCcchhhhhhhhc
Confidence            54555888888888888875543    22   22335578888888888877643111 111333555555554444

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.27  E-value=1.6e-08  Score=102.94  Aligned_cols=178  Identities=23%  Similarity=0.227  Sum_probs=117.9

Q ss_pred             CCCCCCCCcEEEcccCCcccccccCCC-CCcceEEccCCCCC-----------CCChhhHhCCCcccEEEccCCcccccC
Q 036269           31 SINTFEDLTGISLMFNDIHEVHEGLQC-PRLQALFLQKNDLL-----------DIPDPFFQGMKDLKVLDLGGSGVFSLF   98 (623)
Q Consensus        31 ~~~~~~~l~~L~l~~~~~~~l~~~~~~-~~L~~L~l~~~~~~-----------~l~~~~~~~l~~Lr~L~l~~~~~~~~~   98 (623)
                      .|..++.||+|.+.++.+........+ ..|+.|.. +|...           ++-.+  .....|.+.+.++|.+   .
T Consensus       104 ~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~ns--~~Wn~L~~a~fsyN~L---~  177 (1096)
T KOG1859|consen  104 SIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLIC-HNSLDALRHVFASCGGDISNS--PVWNKLATASFSYNRL---V  177 (1096)
T ss_pred             eeccccceeeEEecCcchhhhhhhHHHHHhhhhhhh-hccHHHHHHHHHHhccccccc--hhhhhHhhhhcchhhH---H
Confidence            356678899999998887543221111 22334332 11111           11111  1245677778888877   5


Q ss_pred             CCchhhhccccCcEEeccCCcCCCCcccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhcc
Q 036269           99 SLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRL  178 (623)
Q Consensus        99 ~lp~~~~~l~~L~~L~l~~~~~l~~i~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l  178 (623)
                      .+-.++.-++.|+.|++++|. +.+...+..+++|++||++.|.+..+|.--..-.+|+.|.+++ |.++.+-.  +.++
T Consensus       178 ~mD~SLqll~ale~LnLshNk-~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrn-N~l~tL~g--ie~L  253 (1096)
T KOG1859|consen  178 LMDESLQLLPALESLNLSHNK-FTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRN-NALTTLRG--IENL  253 (1096)
T ss_pred             hHHHHHHHHHHhhhhccchhh-hhhhHHHHhcccccccccccchhccccccchhhhhheeeeecc-cHHHhhhh--HHhh
Confidence            555667778889999999988 7777788888899999999998888774322223488888888 66666665  7888


Q ss_pred             ccCcEEEecccccccccccccccccccccccccCCCCccEEEeecCCCcc
Q 036269          179 RKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEI  228 (623)
Q Consensus       179 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  228 (623)
                      ++|+.|+++.|.+...          .....++.+..|+.|++.||.+..
T Consensus       254 ksL~~LDlsyNll~~h----------seL~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  254 KSLYGLDLSYNLLSEH----------SELEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             hhhhccchhHhhhhcc----------hhhhHHHHHHHHHHHhhcCCcccc
Confidence            8888998888876321          223446677788888888887533

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.21  E-value=3.6e-06  Score=82.99  Aligned_cols=136  Identities=19%  Similarity=0.343  Sum_probs=73.4

Q ss_pred             CCCccEEEEeecCCcccccchhHHHhccccceEEEeccccceeeeeccceeccccccccccCccEEecCCccchhhcccC
Q 036269          373 LSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEIERVNIAKEETELFSSLEKLTLIGLPRMTDIWKG  452 (623)
Q Consensus       373 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~  452 (623)
                      +++++.|++++| .++. +|.    --++|+.|.+++|+.++.+         |..+  .++|+.|++++|..++.+   
T Consensus        51 ~~~l~~L~Is~c-~L~s-LP~----LP~sLtsL~Lsnc~nLtsL---------P~~L--P~nLe~L~Ls~Cs~L~sL---  110 (426)
T PRK15386         51 ARASGRLYIKDC-DIES-LPV----LPNELTEITIENCNNLTTL---------PGSI--PEGLEKLTVCHCPEISGL---  110 (426)
T ss_pred             hcCCCEEEeCCC-CCcc-cCC----CCCCCcEEEccCCCCcccC---------Cchh--hhhhhheEccCccccccc---
Confidence            467788888887 5554 452    1246888888888887665         3322  457888888888766654   


Q ss_pred             CCcccccCCccEEEEEc--CCCcceeccCcccCcccchhhhhhcccccccceeccccCCCCCCCCCCccEEEEecCCCcc
Q 036269          453 DTQFVSLHDLKKIRVVF--CDELRQVFPANLGKKAAAEEMVLYRNRRDQIHIHATTSTSSPTPSLGNLVSITIRGCGKLR  530 (623)
Q Consensus       453 ~~~~~~l~~L~~L~l~~--C~~l~~~~~~~l~~~~~L~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~  530 (623)
                            .++|+.|++..  |..+..+ |.      +|++|.+.++..     ......|  ..-.++|+.|+|++|..+.
T Consensus       111 ------P~sLe~L~L~~n~~~~L~~L-Ps------sLk~L~I~~~n~-----~~~~~lp--~~LPsSLk~L~Is~c~~i~  170 (426)
T PRK15386        111 ------PESVRSLEIKGSATDSIKNV-PN------GLTSLSINSYNP-----ENQARID--NLISPSLKTLSLTGCSNII  170 (426)
T ss_pred             ------ccccceEEeCCCCCcccccC-cc------hHhheecccccc-----ccccccc--cccCCcccEEEecCCCccc
Confidence                  24566777653  2223333 22      344554432110     0000000  0112567777777776553


Q ss_pred             eecchhhhhccCCCCEEEEccCC
Q 036269          531 NLFTTSMVKSLVRLESLEVSRCP  553 (623)
Q Consensus       531 ~~~~~~~~~~l~~L~~L~i~~c~  553 (623)
                       +|+    .-..+|+.|+++.+.
T Consensus       171 -LP~----~LP~SLk~L~ls~n~  188 (426)
T PRK15386        171 -LPE----KLPESLQSITLHIEQ  188 (426)
T ss_pred             -Ccc----cccccCcEEEecccc
Confidence             221    122577777776643

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.14  E-value=4.5e-07  Score=83.00  Aligned_cols=65  Identities=11%  Similarity=0.025  Sum_probs=35.6

Q ss_pred             HHHhhceeEeecccCCcccccccccccCccCccEEEEecccCceeecccccccccccccccceeecccCc
Q 036269          289 NLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLLKLEWLMIVDNR  358 (623)
Q Consensus       289 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~  358 (623)
                      ..++++..+.+..|+.-+. ...-....+|.+.-|.+..+ ++.++....   ....|+.|..|.+.++|
T Consensus       196 r~Fpnv~sv~v~e~PlK~~-s~ek~se~~p~~~~LnL~~~-~idswasvD---~Ln~f~~l~dlRv~~~P  260 (418)
T KOG2982|consen  196 RIFPNVNSVFVCEGPLKTE-SSEKGSEPFPSLSCLNLGAN-NIDSWASVD---ALNGFPQLVDLRVSENP  260 (418)
T ss_pred             hhcccchheeeecCcccch-hhcccCCCCCcchhhhhccc-ccccHHHHH---HHcCCchhheeeccCCc
Confidence            3446777777766653222 11222234555556666555 444443322   55667777777777777

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.10  E-value=1.8e-06  Score=92.65  Aligned_cols=138  Identities=25%  Similarity=0.275  Sum_probs=75.6

Q ss_pred             CCcccEEEccCCcccccCCCchhh-hccccCcEEeccCCcCC--CCc-ccccCCcCCcEEEcCCCCCccccccccCCCcc
Q 036269           81 MKDLKVLDLGGSGVFSLFSLPSSL-SFLINLRTLSLHDCQHF--GDL-SLIGELSLLEILDLSESDVSEIPVSFGRLGHL  156 (623)
Q Consensus        81 l~~Lr~L~l~~~~~~~~~~lp~~~-~~l~~L~~L~l~~~~~l--~~i-~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L  156 (623)
                      -.+|++|+++|....+ ..=|..+ ..+|.|+.|.+.+-. +  .++ ....++++|+.||+|+++++.+ .+++++++|
T Consensus       121 r~nL~~LdI~G~~~~s-~~W~~kig~~LPsL~sL~i~~~~-~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknL  197 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFS-NGWPKKIGTMLPSLRSLVISGRQ-FDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNL  197 (699)
T ss_pred             HHhhhhcCccccchhh-ccHHHHHhhhCcccceEEecCce-ecchhHHHHhhccCccceeecCCCCccCc-HHHhccccH
Confidence            3567777777654321 2222233 256777777777654 3  233 4555677777777777777766 567777777


Q ss_pred             CEEeccCCCCCCcCchhhhhccccCcEEEecccccccccccccccccccccccccCCCCccEEEeecCCC
Q 036269          157 RLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEG  226 (623)
Q Consensus       157 ~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  226 (623)
                      +.|.+++-.....-.-..+.++++|++||++........     .......+--..+++||.||++++..
T Consensus       198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~-----~ii~qYlec~~~LpeLrfLDcSgTdi  262 (699)
T KOG3665|consen  198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDT-----KIIEQYLECGMVLPELRFLDCSGTDI  262 (699)
T ss_pred             HHHhccCCCCCchhhHHHHhcccCCCeeeccccccccch-----HHHHHHHHhcccCccccEEecCCcch
Confidence            777776633222111111556777777777664331100     00111122224467777777777653

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.09  E-value=1.2e-06  Score=93.96  Aligned_cols=131  Identities=22%  Similarity=0.217  Sum_probs=78.0

Q ss_pred             CCcceEEccCCCCC--CCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCCcCCCCcccccCCcCCcE
Q 036269           58 PRLQALFLQKNDLL--DIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEI  135 (623)
Q Consensus        58 ~~L~~L~l~~~~~~--~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~i~~~~~l~~L~~  135 (623)
                      .+|++|+++|....  ..+..+...+|.||.|.+++-.+.. +.+.....++++|+.||+++++ ++++..++++++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~-~dF~~lc~sFpNL~sLDIS~Tn-I~nl~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDN-DDFSQLCASFPNLRSLDISGTN-ISNLSGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecc-hhHHHHhhccCccceeecCCCC-ccCcHHHhccccHHH
Confidence            56777777665543  4444444557777777777665532 2333444567777777777777 777777777777777


Q ss_pred             EEcCCCCCcccc--ccccCCCccCEEeccCCCCCCcCch------hhhhccccCcEEEeccccc
Q 036269          136 LDLSESDVSEIP--VSFGRLGHLRLLDLTDCYNLELIPR------GVLSRLRKLEELYMSKTFC  191 (623)
Q Consensus       136 L~l~~~~i~~lp--~~i~~l~~L~~L~l~~~~~~~~l~~------~~~~~l~~L~~L~l~~~~~  191 (623)
                      |.+.+-.+..-.  ..+..+++|+.||++..... ..+.      +--..+++|+.|+.+++.+
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTdi  262 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTDI  262 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccc-cchHHHHHHHHhcccCccccEEecCCcch
Confidence            776665555322  34556777777777763222 1111      0012367777777777655

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.00  E-value=1.3e-05  Score=79.19  Aligned_cols=137  Identities=19%  Similarity=0.270  Sum_probs=89.9

Q ss_pred             HHhccccceEEEeccccceeeeeccceeccccccccccCccEEecCCccchhhcccCCCcccccCCccEEEEEcCCCcce
Q 036269          396 VQSFQNLQRLRVEGCELLVSVFEIERVNIAKEETELFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFCDELRQ  475 (623)
Q Consensus       396 ~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~L~~L~l~~C~~l~~  475 (623)
                      +..+..++.|++++| .|+++         |   ...++|++|.+++|.+++.++   ..+  .++|++|++.+|..+..
T Consensus        48 ~~~~~~l~~L~Is~c-~L~sL---------P---~LP~sLtsL~Lsnc~nLtsLP---~~L--P~nLe~L~Ls~Cs~L~s  109 (426)
T PRK15386         48 IEEARASGRLYIKDC-DIESL---------P---VLPNELTEITIENCNNLTTLP---GSI--PEGLEKLTVCHCPEISG  109 (426)
T ss_pred             HHHhcCCCEEEeCCC-CCccc---------C---CCCCCCcEEEccCCCCcccCC---chh--hhhhhheEccCcccccc
Confidence            556789999999997 77776         4   124579999999998887763   222  36899999999877654


Q ss_pred             eccCcccCcccchhhhhhcccccccceeccccCCCCCCCCCCccEEEEec--CCCcceecchhhhhccCCCCEEEEccCC
Q 036269          476 VFPANLGKKAAAEEMVLYRNRRDQIHIHATTSTSSPTPSLGNLVSITIRG--CGKLRNLFTTSMVKSLVRLESLEVSRCP  553 (623)
Q Consensus       476 ~~~~~l~~~~~L~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~--c~~l~~~~~~~~~~~l~~L~~L~i~~c~  553 (623)
                      + |                                     .+|+.|++++  |..+..+        .++|++|.+.++.
T Consensus       110 L-P-------------------------------------~sLe~L~L~~n~~~~L~~L--------PssLk~L~I~~~n  143 (426)
T PRK15386        110 L-P-------------------------------------ESVRSLEIKGSATDSIKNV--------PNGLTSLSINSYN  143 (426)
T ss_pred             c-c-------------------------------------cccceEEeCCCCCcccccC--------cchHhheeccccc
Confidence            4 1                                     3466666653  2234443        3467888886543


Q ss_pred             chhhhhcCCCCcccCcCCCcceeec-CcccceecccCcccceecCCCCcceeecCCccEEEeccC
Q 036269          554 TLQEIIMNDEGEVGLQGASTEKITF-PSLFSIQLCLLDSLTCFCSSGSHATVEFLALEALQIIDC  617 (623)
Q Consensus       554 ~l~~l~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c  617 (623)
                      ......              ....+ ++|++|.+.+|..+. ++. +.     +.+|+.|.+..+
T Consensus       144 ~~~~~~--------------lp~~LPsSLk~L~Is~c~~i~-LP~-~L-----P~SLk~L~ls~n  187 (426)
T PRK15386        144 PENQAR--------------IDNLISPSLKTLSLTGCSNII-LPE-KL-----PESLQSITLHIE  187 (426)
T ss_pred             cccccc--------------cccccCCcccEEEecCCCccc-Ccc-cc-----cccCcEEEeccc
Confidence            221110              11234 489999999998764 333 22     479999998765

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.99  E-value=9.1e-06  Score=53.01  Aligned_cols=34  Identities=41%  Similarity=0.556  Sum_probs=15.7

Q ss_pred             cccEEEccCCcccccCCCchhhhccccCcEEeccCCc
Q 036269           83 DLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQ  119 (623)
Q Consensus        83 ~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~  119 (623)
                      +|++|++++|.+   ..+|..+.++++|++|++++|.
T Consensus         2 ~L~~L~l~~N~i---~~l~~~l~~l~~L~~L~l~~N~   35 (44)
T PF12799_consen    2 NLEELDLSNNQI---TDLPPELSNLPNLETLNLSNNP   35 (44)
T ss_dssp             T-SEEEETSSS----SSHGGHGTTCTTSSEEEETSSC
T ss_pred             cceEEEccCCCC---cccCchHhCCCCCCEEEecCCC
Confidence            445555555554   3444444455555555555544

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.92  E-value=2e-05  Score=68.43  Aligned_cols=100  Identities=27%  Similarity=0.371  Sum_probs=69.4

Q ss_pred             CCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhh-hccccCcEEeccCCcCCCC---cccccCCcCC
Q 036269           58 PRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSL-SFLINLRTLSLHDCQHFGD---LSLIGELSLL  133 (623)
Q Consensus        58 ~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~-~~l~~L~~L~l~~~~~l~~---i~~~~~l~~L  133 (623)
                      .....+||++|.+..++.  |..++.|..|.+.+|.++   .+-+.+ ..+++|..|.+.+|. +..   +..+..++.|
T Consensus        42 d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt---~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L  115 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRIT---RIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKL  115 (233)
T ss_pred             cccceecccccchhhccc--CCCccccceEEecCCcce---eeccchhhhccccceEEecCcc-hhhhhhcchhccCCcc
Confidence            345677888888876665  678888888888888874   433333 345678888888877 643   3556677788


Q ss_pred             cEEEcCCCCCcccc----ccccCCCccCEEeccC
Q 036269          134 EILDLSESDVSEIP----VSFGRLGHLRLLDLTD  163 (623)
Q Consensus       134 ~~L~l~~~~i~~lp----~~i~~l~~L~~L~l~~  163 (623)
                      ++|.+-+|.++.-+    ..+.++++|+.||+.+
T Consensus       116 ~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  116 EYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             ceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence            88888887766433    2466777777777765

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.82  E-value=2.8e-05  Score=50.69  Aligned_cols=32  Identities=34%  Similarity=0.614  Sum_probs=17.7

Q ss_pred             CCcEEEcCCCCCccccccccCCCccCEEeccC
Q 036269          132 LLEILDLSESDVSEIPVSFGRLGHLRLLDLTD  163 (623)
Q Consensus       132 ~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~  163 (623)
                      +|++|++++|.++.+|..+++|++|++|++++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~   33 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSN   33 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETS
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecC
Confidence            45555555555555555555666666666655

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.81  E-value=3.4e-07  Score=93.70  Aligned_cols=123  Identities=27%  Similarity=0.266  Sum_probs=87.8

Q ss_pred             CCCCcEEEcccCCcccccccC-CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhh-hccccCcE
Q 036269           35 FEDLTGISLMFNDIHEVHEGL-QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSL-SFLINLRT  112 (623)
Q Consensus        35 ~~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~-~~l~~L~~  112 (623)
                      ..+|...+++.|.+..+-... -++.++.|+|++|.+.+..  .+..+++|++||+++|.+   ..+|..- ..+. |+.
T Consensus       163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L---~~vp~l~~~gc~-L~~  236 (1096)
T KOG1859|consen  163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCL---RHVPQLSMVGCK-LQL  236 (1096)
T ss_pred             hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchh---ccccccchhhhh-hee
Confidence            456777778887776665555 4578888888888887654  257888888888888887   5565432 2343 888


Q ss_pred             EeccCCcCCCCcccccCCcCCcEEEcCCCCCcccc--ccccCCCccCEEeccCC
Q 036269          113 LSLHDCQHFGDLSLIGELSLLEILDLSESDVSEIP--VSFGRLGHLRLLDLTDC  164 (623)
Q Consensus       113 L~l~~~~~l~~i~~~~~l~~L~~L~l~~~~i~~lp--~~i~~l~~L~~L~l~~~  164 (623)
                      |.+++|. ++.+..+.++.+|+.||++.|-+...-  ..++.+..|+.|++.||
T Consensus       237 L~lrnN~-l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGN  289 (1096)
T KOG1859|consen  237 LNLRNNA-LTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGN  289 (1096)
T ss_pred             eeecccH-HHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCC
Confidence            8888887 777777888888888888888665321  23566777888888874

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.69  E-value=7.2e-05  Score=65.08  Aligned_cols=105  Identities=24%  Similarity=0.288  Sum_probs=85.0

Q ss_pred             CCCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEec
Q 036269           36 EDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSL  115 (623)
Q Consensus        36 ~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l  115 (623)
                      .+.-.++++.|.+..++..-.++.|.+|.+..|+++.+.+.+-..+++|..|.+.+|.+..++.+ ..+..|+.|++|.+
T Consensus        42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl-~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDL-DPLASCPKLEYLTL  120 (233)
T ss_pred             cccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhc-chhccCCccceeee
Confidence            35667999999988777666889999999999999988888777789999999999988322222 23668999999999


Q ss_pred             cCCcCCCCc-----ccccCCcCCcEEEcCCCC
Q 036269          116 HDCQHFGDL-----SLIGELSLLEILDLSESD  142 (623)
Q Consensus       116 ~~~~~l~~i-----~~~~~l~~L~~L~l~~~~  142 (623)
                      -+|+ +..-     ..+.++++|+.||..+-.
T Consensus       121 l~Np-v~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  121 LGNP-VEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             cCCc-hhcccCceeEEEEecCcceEeehhhhh
Confidence            9998 7433     568899999999987643

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.67  E-value=2.5e-05  Score=71.92  Aligned_cols=179  Identities=16%  Similarity=0.192  Sum_probs=81.2

Q ss_pred             CCCCcceEEccCCCCCCCC--hhhHhCCCcccEEEccCCcccc-cCCCchhhhccccCcEEeccCCcCC--CCc-ccccC
Q 036269           56 QCPRLQALFLQKNDLLDIP--DPFFQGMKDLKVLDLGGSGVFS-LFSLPSSLSFLINLRTLSLHDCQHF--GDL-SLIGE  129 (623)
Q Consensus        56 ~~~~L~~L~l~~~~~~~l~--~~~~~~l~~Lr~L~l~~~~~~~-~~~lp~~~~~l~~L~~L~l~~~~~l--~~i-~~~~~  129 (623)
                      .+..++.++|.+|.+.+..  .+++.++|.|++|+++.|.+.+ ++.+|   ..+.+|++|-+.+.. +  +.. +.+..
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT~-L~w~~~~s~l~~  144 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGTG-LSWTQSTSSLDD  144 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcCCC-CChhhhhhhhhc
Confidence            4555666666666665222  2334556666666666665431 01222   134456666665554 4  112 44555


Q ss_pred             CcCCcEEEcCCCCCcccc---ccccCC-CccCEEeccCCCCCC--cCchhhhhccccCcEEEeccccccccccccccccc
Q 036269          130 LSLLEILDLSESDVSEIP---VSFGRL-GHLRLLDLTDCYNLE--LIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRS  203 (623)
Q Consensus       130 l~~L~~L~l~~~~i~~lp---~~i~~l-~~L~~L~l~~~~~~~--~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~  203 (623)
                      ++.++.|.++.|.+..+-   ..+... +.+++|++..|....  ... .+...++++..+.+..|.+.          +
T Consensus       145 lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~-~l~r~Fpnv~sv~v~e~PlK----------~  213 (418)
T KOG2982|consen  145 LPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKN-KLSRIFPNVNSVFVCEGPLK----------T  213 (418)
T ss_pred             chhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHH-hHHhhcccchheeeecCccc----------c
Confidence            556666655555333111   011111 233344433331110  000 01122345555545444331          1


Q ss_pred             ccccccccCCCCccEEEeecCCCccCCCc---ccccCccEEEEEeCCCC
Q 036269          204 NAKFIELGALSRLTSLHIDIPEGEIMPSD---MSFQNLTSFSITIGGPE  249 (623)
Q Consensus       204 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~---~~~~~L~~L~l~~~~~~  249 (623)
                      ....+....++.+..|++.-++++.....   ..+++|..+.+..++.+
T Consensus       214 ~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  214 ESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS  262 (418)
T ss_pred             hhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence            11222233445555666666655444332   66777777777766544

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.67  E-value=6.7e-06  Score=66.56  Aligned_cols=106  Identities=22%  Similarity=0.303  Sum_probs=60.3

Q ss_pred             CcEEEcccCCcccccccC----CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEE
Q 036269           38 LTGISLMFNDIHEVHEGL----QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTL  113 (623)
Q Consensus        38 l~~L~l~~~~~~~l~~~~----~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L  113 (623)
                      +..+++++|.+..+++..    ...+|+..++++|.+.+.|+.+-.+++....|++.+|.+   ..+|.++..++.|+.|
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~nei---sdvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEI---SDVPEELAAMPALRSL  105 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhh---hhchHHHhhhHHhhhc
Confidence            444566777665444332    345566666677766666666655666666666666666   5666666666666666


Q ss_pred             eccCCcCCCC-cccccCCcCCcEEEcCCCCCcccc
Q 036269          114 SLHDCQHFGD-LSLIGELSLLEILDLSESDVSEIP  147 (623)
Q Consensus       114 ~l~~~~~l~~-i~~~~~l~~L~~L~l~~~~i~~lp  147 (623)
                      +++.|+ +.. +..+..+.++-.|+...|....+|
T Consensus       106 Nl~~N~-l~~~p~vi~~L~~l~~Lds~~na~~eid  139 (177)
T KOG4579|consen  106 NLRFNP-LNAEPRVIAPLIKLDMLDSPENARAEID  139 (177)
T ss_pred             ccccCc-cccchHHHHHHHhHHHhcCCCCccccCc
Confidence            666666 422 233333445555555444444444

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.62  E-value=8.1e-06  Score=66.09  Aligned_cols=111  Identities=21%  Similarity=0.267  Sum_probs=77.0

Q ss_pred             CCcceEEccCCCCCCCChhh--HhCCCcccEEEccCCcccccCCCchhhh-ccccCcEEeccCCcCCCCc-ccccCCcCC
Q 036269           58 PRLQALFLQKNDLLDIPDPF--FQGMKDLKVLDLGGSGVFSLFSLPSSLS-FLINLRTLSLHDCQHFGDL-SLIGELSLL  133 (623)
Q Consensus        58 ~~L~~L~l~~~~~~~l~~~~--~~~l~~Lr~L~l~~~~~~~~~~lp~~~~-~l~~L~~L~l~~~~~l~~i-~~~~~l~~L  133 (623)
                      ..+..++|+.|.+..+++..  +.+..+|...++++|.+   ..+|+.+. +++..+.|++++|. +.++ ..+..++.|
T Consensus        27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~f---k~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aL  102 (177)
T KOG4579|consen   27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGF---KKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPAL  102 (177)
T ss_pred             HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchh---hhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHh
Confidence            34566777777766444322  35667777778888888   77777665 45578888888887 7666 457777788


Q ss_pred             cEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchh
Q 036269          134 EILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRG  173 (623)
Q Consensus       134 ~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~  173 (623)
                      +.|+++.|.+...|..+..+.++-+|+..+ +-...+|.+
T Consensus       103 r~lNl~~N~l~~~p~vi~~L~~l~~Lds~~-na~~eid~d  141 (177)
T KOG4579|consen  103 RSLNLRFNPLNAEPRVIAPLIKLDMLDSPE-NARAEIDVD  141 (177)
T ss_pred             hhcccccCccccchHHHHHHHhHHHhcCCC-CccccCcHH
Confidence            888888887777777777777777777766 445555544

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.44  E-value=0.00015  Score=66.00  Aligned_cols=183  Identities=15%  Similarity=0.095  Sum_probs=110.5

Q ss_pred             CCCCCCcEEEcccCCcc-----cccccC-CCCCcceEEccCCCCC----CCChh------hHhCCCcccEEEccCCcccc
Q 036269           33 NTFEDLTGISLMFNDIH-----EVHEGL-QCPRLQALFLQKNDLL----DIPDP------FFQGMKDLKVLDLGGSGVFS   96 (623)
Q Consensus        33 ~~~~~l~~L~l~~~~~~-----~l~~~~-~~~~L~~L~l~~~~~~----~l~~~------~~~~l~~Lr~L~l~~~~~~~   96 (623)
                      ..+..+..+++|+|.|+     .+...+ +-.+|+..++++-...    .++..      ++.+||+|+..+++.|.|. 
T Consensus        27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg-  105 (388)
T COG5238          27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG-  105 (388)
T ss_pred             HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC-
Confidence            34567888899999885     333333 5567777777654322    22221      2468899999999999886 


Q ss_pred             cCCCchh----hhccccCcEEeccCCcCCCCc--ccc-------------cCCcCCcEEEcCCCCCccccc-----cccC
Q 036269           97 LFSLPSS----LSFLINLRTLSLHDCQHFGDL--SLI-------------GELSLLEILDLSESDVSEIPV-----SFGR  152 (623)
Q Consensus        97 ~~~lp~~----~~~l~~L~~L~l~~~~~l~~i--~~~-------------~~l~~L~~L~l~~~~i~~lp~-----~i~~  152 (623)
                       ...|..    +.+-+.|.+|.+++|. ++.+  ..+             ..-+.|+......|.+...|.     .+..
T Consensus       106 -~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~s  183 (388)
T COG5238         106 -SEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLES  183 (388)
T ss_pred             -cccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHh
Confidence             455543    4566788999998887 6554  122             234678888888887765543     2223


Q ss_pred             CCccCEEeccCCCCCCcCch-----hhhhccccCcEEEecccccccccccccccccccccccccCCCCccEEEeecCCC
Q 036269          153 LGHLRLLDLTDCYNLELIPR-----GVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEG  226 (623)
Q Consensus       153 l~~L~~L~l~~~~~~~~l~~-----~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  226 (623)
                      -.+|+.+.+.. +.+..-..     .-+..+.+|+.|++..|.++..-       +......+...+.|+.|.+..|-+
T Consensus       184 h~~lk~vki~q-NgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~g-------S~~La~al~~W~~lrEL~lnDCll  254 (388)
T COG5238         184 HENLKEVKIQQ-NGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEG-------SRYLADALCEWNLLRELRLNDCLL  254 (388)
T ss_pred             hcCceeEEeee-cCcCcchhHHHHHHHHHHhCcceeeeccccchhhhh-------HHHHHHHhcccchhhhccccchhh
Confidence            35777777776 33321110     01345677788888777664221       223334455566677777766653

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.33  E-value=9.9e-06  Score=73.72  Aligned_cols=81  Identities=26%  Similarity=0.245  Sum_probs=60.0

Q ss_pred             CCCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEec
Q 036269           36 EDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSL  115 (623)
Q Consensus        36 ~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l  115 (623)
                      ..++.|+..+|.++.|.-..+++.|++|.|+-|.+..+.+  |..|++|+.|+|..|.+.+++++ ..+.++++||+|-|
T Consensus        19 ~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL-~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDEL-EYLKNLPSLRTLWL   95 (388)
T ss_pred             HHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHH-HHHhcCchhhhHhh
Confidence            5677788888888877666678888888888888887766  67888888888888877422222 34567788888888


Q ss_pred             cCCc
Q 036269          116 HDCQ  119 (623)
Q Consensus       116 ~~~~  119 (623)
                      ..|+
T Consensus        96 ~ENP   99 (388)
T KOG2123|consen   96 DENP   99 (388)
T ss_pred             ccCC
Confidence            7776

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.28  E-value=8.9e-05  Score=67.47  Aligned_cols=82  Identities=27%  Similarity=0.291  Sum_probs=39.5

Q ss_pred             CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCC--cccccCCCchhhhccccCcEEeccCCcCCCCc---ccccCC
Q 036269           56 QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGS--GVFSLFSLPSSLSFLINLRTLSLHDCQHFGDL---SLIGEL  130 (623)
Q Consensus        56 ~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~--~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~i---~~~~~l  130 (623)
                      ....|+.|++.+...+.+..  |..+++|++|.++.|  .+.  ..++.-..++++|++|++++|. ++.+   ..+..+
T Consensus        41 ~~~~le~ls~~n~gltt~~~--~P~Lp~LkkL~lsdn~~~~~--~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~pl~~l  115 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTLTN--FPKLPKLKKLELSDNYRRVS--GGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRPLKEL  115 (260)
T ss_pred             cccchhhhhhhccceeeccc--CCCcchhhhhcccCCccccc--ccceehhhhCCceeEEeecCCc-cccccccchhhhh
Confidence            34445555555555543333  445556666666655  332  3344334445556666655555 4333   233334


Q ss_pred             cCCcEEEcCCCC
Q 036269          131 SLLEILDLSESD  142 (623)
Q Consensus       131 ~~L~~L~l~~~~  142 (623)
                      ++|..|++..|.
T Consensus       116 ~nL~~Ldl~n~~  127 (260)
T KOG2739|consen  116 ENLKSLDLFNCS  127 (260)
T ss_pred             cchhhhhcccCC
Confidence            444444444443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.05  E-value=0.001  Score=60.77  Aligned_cols=87  Identities=18%  Similarity=0.239  Sum_probs=50.6

Q ss_pred             hhccccCcEEeccCCcCCCCc------ccccCCcCCcEEEcCCCCCc----ccc-------ccccCCCccCEEeccCCCC
Q 036269          104 LSFLINLRTLSLHDCQHFGDL------SLIGELSLLEILDLSESDVS----EIP-------VSFGRLGHLRLLDLTDCYN  166 (623)
Q Consensus       104 ~~~l~~L~~L~l~~~~~l~~i------~~~~~l~~L~~L~l~~~~i~----~lp-------~~i~~l~~L~~L~l~~~~~  166 (623)
                      +..+..+..+++++|. ++.-      ..+.+-.+|+..++++-...    .+|       ..+-++++|+..++++|-+
T Consensus        26 l~~~d~~~evdLSGNt-igtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf  104 (388)
T COG5238          26 LEMMDELVEVDLSGNT-IGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF  104 (388)
T ss_pred             HHhhcceeEEeccCCc-ccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence            3446677778888877 6321      33445567777776654222    222       2455677777777777544


Q ss_pred             CCcCch---hhhhccccCcEEEeccccc
Q 036269          167 LELIPR---GVLSRLRKLEELYMSKTFC  191 (623)
Q Consensus       167 ~~~l~~---~~~~~l~~L~~L~l~~~~~  191 (623)
                      ....|.   +.+.+-..|.+|.+++|..
T Consensus       105 g~~~~e~L~d~is~~t~l~HL~l~NnGl  132 (388)
T COG5238         105 GSEFPEELGDLISSSTDLVHLKLNNNGL  132 (388)
T ss_pred             CcccchHHHHHHhcCCCceeEEeecCCC
Confidence            444443   3345666777777766643

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.95  E-value=0.00048  Score=62.80  Aligned_cols=85  Identities=27%  Similarity=0.395  Sum_probs=63.2

Q ss_pred             CCCCCCcEEEcccCCcccccccCCCCCcceEEccCC--CCC-CCChhhHhCCCcccEEEccCCcccccCCCchhhhcccc
Q 036269           33 NTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKN--DLL-DIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLIN  109 (623)
Q Consensus        33 ~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~--~~~-~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~  109 (623)
                      ..+..+..++..+..++.+...-.+++|+.|.++.|  ++. .++.-+ ..+++|++|++++|.+..+.+++ .+..+.+
T Consensus        40 d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~-e~~P~l~~l~ls~Nki~~lstl~-pl~~l~n  117 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLA-EKAPNLKVLNLSGNKIKDLSTLR-PLKELEN  117 (260)
T ss_pred             ccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehh-hhCCceeEEeecCCccccccccc-hhhhhcc
Confidence            344667777777777777766668899999999999  444 554433 67799999999999874212332 3567888


Q ss_pred             CcEEeccCCc
Q 036269          110 LRTLSLHDCQ  119 (623)
Q Consensus       110 L~~L~l~~~~  119 (623)
                      |..|++.+|.
T Consensus       118 L~~Ldl~n~~  127 (260)
T KOG2739|consen  118 LKSLDLFNCS  127 (260)
T ss_pred             hhhhhcccCC
Confidence            9999999998

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.93  E-value=5.9e-05  Score=68.80  Aligned_cols=77  Identities=27%  Similarity=0.234  Sum_probs=35.1

Q ss_pred             CCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCCcCCCCc---ccccCCcCCc
Q 036269           58 PRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDL---SLIGELSLLE  134 (623)
Q Consensus        58 ~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~i---~~~~~l~~L~  134 (623)
                      .+++.|++-||.+.++.-  +.+++.|++|.|+-|.+   ..+ ..+..|++|+.|.|..|. |.++   ..+.++++|+
T Consensus        19 ~~vkKLNcwg~~L~DIsi--c~kMp~lEVLsLSvNkI---ssL-~pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr   91 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDISI--CEKMPLLEVLSLSVNKI---SSL-APLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLR   91 (388)
T ss_pred             HHhhhhcccCCCccHHHH--HHhcccceeEEeecccc---ccc-hhHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhh
Confidence            344445555555544432  44555555555555555   222 224445555555555554 4333   2333444444


Q ss_pred             EEEcCCC
Q 036269          135 ILDLSES  141 (623)
Q Consensus       135 ~L~l~~~  141 (623)
                      .|.|..|
T Consensus        92 ~LWL~EN   98 (388)
T KOG2123|consen   92 TLWLDEN   98 (388)
T ss_pred             hHhhccC
Confidence            4444333

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.59  E-value=0.006  Score=51.25  Aligned_cols=78  Identities=14%  Similarity=0.344  Sum_probs=29.4

Q ss_pred             CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCc-hhhhccccCcEEeccCCcCCCCc--ccccCCcC
Q 036269           56 QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLP-SSLSFLINLRTLSLHDCQHFGDL--SLIGELSL  132 (623)
Q Consensus        56 ~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~  132 (623)
                      .+.+|+.+.+.. .+..++...|.++++|+.+.+..+ +   ..++ ..+.+++.++.+.+.+ . +..+  ..+..+.+
T Consensus        10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~---~~i~~~~F~~~~~l~~i~~~~-~-~~~i~~~~F~~~~~   82 (129)
T PF13306_consen   10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-L---TSIGDNAFSNCKSLESITFPN-N-LKSIGDNAFSNCTN   82 (129)
T ss_dssp             T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-T---SCE-TTTTTT-TT-EEEEETS-T-T-EE-TTTTTT-TT
T ss_pred             CCCCCCEEEECC-CeeEeChhhccccccccccccccc-c---cccceeeeecccccccccccc-c-cccccccccccccc
Confidence            444555555543 233444444555555555555443 3   2222 2244444555555543 2 2222  23344455


Q ss_pred             CcEEEcCC
Q 036269          133 LEILDLSE  140 (623)
Q Consensus       133 L~~L~l~~  140 (623)
                      |+.+++..
T Consensus        83 l~~i~~~~   90 (129)
T PF13306_consen   83 LKNIDIPS   90 (129)
T ss_dssp             ECEEEETT
T ss_pred             ccccccCc
Confidence            55555543

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.38  E-value=0.0005  Score=60.08  Aligned_cols=71  Identities=17%  Similarity=0.301  Sum_probs=55.4

Q ss_pred             CCCCCccEEEEecCCCcceecchhhhhccCCCCEEEEccCCchhhhhcCCCCcccCcCCCcceeecCcccceecccCccc
Q 036269          513 PSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSRCPTLQEIIMNDEGEVGLQGASTEKITFPSLFSIQLCLLDSL  592 (623)
Q Consensus       513 ~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l  592 (623)
                      ..+++++.|.+.+|..+.++--..+-+-.++||.|+|++|+.|++-     |+.       .+..+++|+.|.|++.|..
T Consensus       122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~-----GL~-------~L~~lknLr~L~l~~l~~v  189 (221)
T KOG3864|consen  122 RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG-----GLA-------CLLKLKNLRRLHLYDLPYV  189 (221)
T ss_pred             hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh-----HHH-------HHHHhhhhHHHHhcCchhh
Confidence            4778899999999999988755444556799999999999999877     222       3457788999999988766


Q ss_pred             cee
Q 036269          593 TCF  595 (623)
Q Consensus       593 ~~~  595 (623)
                      ...
T Consensus       190 ~~~  192 (221)
T KOG3864|consen  190 ANL  192 (221)
T ss_pred             hch
Confidence            544

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.12  E-value=0.00087  Score=58.61  Aligned_cols=71  Identities=17%  Similarity=0.255  Sum_probs=49.8

Q ss_pred             ccccccccceeecccCcccccccccccCCCcCCCccEEEEeecCCcccccchhHHHhccccceEEEeccccce
Q 036269          342 LRVTLLKLEWLMIVDNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLV  414 (623)
Q Consensus       342 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~  414 (623)
                      ....+++++.|.+.+|..+.+|+.+.+.. ..++|+.|+|++|+++++..- ..+..+++|+.|++.+.+.+.
T Consensus       120 ~L~~l~~i~~l~l~~ck~~dD~~L~~l~~-~~~~L~~L~lsgC~rIT~~GL-~~L~~lknLr~L~l~~l~~v~  190 (221)
T KOG3864|consen  120 HLRDLRSIKSLSLANCKYFDDWCLERLGG-LAPSLQDLDLSGCPRITDGGL-ACLLKLKNLRRLHLYDLPYVA  190 (221)
T ss_pred             HHhccchhhhheeccccchhhHHHHHhcc-cccchheeeccCCCeechhHH-HHHHHhhhhHHHHhcCchhhh
Confidence            45566777888888888777775544432 568888888888888887433 347778888888888765543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.60  E-value=0.0054  Score=33.07  Aligned_cols=21  Identities=48%  Similarity=0.716  Sum_probs=13.2

Q ss_pred             CCcEEEcCCCCCccccccccC
Q 036269          132 LLEILDLSESDVSEIPVSFGR  152 (623)
Q Consensus       132 ~L~~L~l~~~~i~~lp~~i~~  152 (623)
                      +|++||+++|.++.+|.++++
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT
T ss_pred             CccEEECCCCcCEeCChhhcC
Confidence            466677777766666655543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.58  E-value=0.037  Score=46.36  Aligned_cols=106  Identities=14%  Similarity=0.283  Sum_probs=58.7

Q ss_pred             CChhhHhCCCcccEEEccCCcccccCCCc-hhhhccccCcEEeccCCcCCCCc--ccccCCcCCcEEEcCCCCCcccc-c
Q 036269           73 IPDPFFQGMKDLKVLDLGGSGVFSLFSLP-SSLSFLINLRTLSLHDCQHFGDL--SLIGELSLLEILDLSESDVSEIP-V  148 (623)
Q Consensus        73 l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp-~  148 (623)
                      ++..+|.++++|+.+.+.. .+   ..++ ..+..+++|+.+++.++  +..+  ..+..+++|+.+.+.. .+..++ .
T Consensus         3 i~~~~F~~~~~l~~i~~~~-~~---~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~   75 (129)
T PF13306_consen    3 IGNNAFYNCSNLESITFPN-TI---KKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDN   75 (129)
T ss_dssp             E-TTTTTT-TT--EEEETS-T-----EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TT
T ss_pred             ECHHHHhCCCCCCEEEECC-Ce---eEeChhhccccccccccccccc--ccccceeeeecccccccccccc-cccccccc
Confidence            3455678888888888875 34   3444 34677888888888763  5555  4567777788888865 444444 3


Q ss_pred             cccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecc
Q 036269          149 SFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSK  188 (623)
Q Consensus       149 ~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~  188 (623)
                      .+..+++|+.+.+.. + +..++...+.+. +++.+.+..
T Consensus        76 ~F~~~~~l~~i~~~~-~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   76 AFSNCTNLKNIDIPS-N-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             TTTT-TTECEEEETT-T--BEEHTTTTTT--T--EEE-TT
T ss_pred             cccccccccccccCc-c-ccEEchhhhcCC-CceEEEECC
Confidence            455688888888865 2 556666656666 777777654

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=93.96  E-value=0.028  Score=30.24  Aligned_cols=20  Identities=50%  Similarity=0.801  Sum_probs=12.4

Q ss_pred             cccEEEccCCcccccCCCchhhh
Q 036269           83 DLKVLDLGGSGVFSLFSLPSSLS  105 (623)
Q Consensus        83 ~Lr~L~l~~~~~~~~~~lp~~~~  105 (623)
                      +|++|++++|.+   ..+|..+.
T Consensus         1 ~L~~Ldls~n~l---~~ip~~~~   20 (22)
T PF00560_consen    1 NLEYLDLSGNNL---TSIPSSFS   20 (22)
T ss_dssp             TESEEEETSSEE---SEEGTTTT
T ss_pred             CccEEECCCCcC---EeCChhhc
Confidence            366777777766   55665544

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.66  E-value=0.0023  Score=57.10  Aligned_cols=87  Identities=16%  Similarity=0.117  Sum_probs=64.4

Q ss_pred             CCCCCCCCCCcEEEcccCCcccccccC-CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhcc
Q 036269           29 WPSINTFEDLTGISLMFNDIHEVHEGL-QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFL  107 (623)
Q Consensus        29 ~~~~~~~~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l  107 (623)
                      +..+..+.+++.||++.+.+-.+...+ .+..+..|+++.|.+..+|.++ .....++.+++..|..   ...|.++...
T Consensus        35 v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~-~q~~e~~~~~~~~n~~---~~~p~s~~k~  110 (326)
T KOG0473|consen   35 VREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDA-KQQRETVNAASHKNNH---SQQPKSQKKE  110 (326)
T ss_pred             hhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhH-HHHHHHHHHHhhccch---hhCCcccccc
Confidence            445677788888888888776555555 4566777788877777677664 7777778888887777   6778888888


Q ss_pred             ccCcEEeccCCc
Q 036269          108 INLRTLSLHDCQ  119 (623)
Q Consensus       108 ~~L~~L~l~~~~  119 (623)
                      +++++++..+++
T Consensus       111 ~~~k~~e~k~~~  122 (326)
T KOG0473|consen  111 PHPKKNEQKKTE  122 (326)
T ss_pred             CCcchhhhccCc
Confidence            888888887777

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.62  E-value=0.045  Score=27.23  Aligned_cols=16  Identities=38%  Similarity=0.648  Sum_probs=6.2

Q ss_pred             CCcEEEcCCCCCcccc
Q 036269          132 LLEILDLSESDVSEIP  147 (623)
Q Consensus       132 ~L~~L~l~~~~i~~lp  147 (623)
                      +|+.|++++|.++.+|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4555555555554443

...

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=90.67  E-value=0.16  Score=28.59  Aligned_cols=16  Identities=19%  Similarity=0.451  Sum_probs=11.8

Q ss_pred             cCCccEEEeccCCCCc
Q 036269          606 FLALEALQIIDCPGMK  621 (623)
Q Consensus       606 ~~~L~~L~i~~c~~l~  621 (623)
                      |++|++|++++|++++
T Consensus         1 c~~L~~L~l~~C~~it   16 (26)
T smart00367        1 CPNLRELDLSGCTNIT   16 (26)
T ss_pred             CCCCCEeCCCCCCCcC
Confidence            4677788888887765

>smart00370 LRR Leucine-rich repeats, outliers

Probab=88.36  E-value=0.5  Score=26.46  Aligned_cols=19  Identities=32%  Similarity=0.408  Sum_probs=9.8

Q ss_pred             CcceEEccCCCCCCCChhh
Q 036269           59 RLQALFLQKNDLLDIPDPF   77 (623)
Q Consensus        59 ~L~~L~l~~~~~~~l~~~~   77 (623)
                      +|++|++++|.+..+|..+
T Consensus         3 ~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        3 NLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCEEECCCCcCCcCCHHH
Confidence            4555555555555555444

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=88.36  E-value=0.5  Score=26.46  Aligned_cols=19  Identities=32%  Similarity=0.408  Sum_probs=9.8

Q ss_pred             CcceEEccCCCCCCCChhh
Q 036269           59 RLQALFLQKNDLLDIPDPF   77 (623)
Q Consensus        59 ~L~~L~l~~~~~~~l~~~~   77 (623)
                      +|++|++++|.+..+|..+
T Consensus         3 ~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        3 NLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCEEECCCCcCCcCCHHH
Confidence            4555555555555555444

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=87.82  E-value=0.25  Score=27.77  Aligned_cols=17  Identities=24%  Similarity=0.544  Sum_probs=9.4

Q ss_pred             CCCCEEEEccCCchhhh
Q 036269          542 VRLESLEVSRCPTLQEI  558 (623)
Q Consensus       542 ~~L~~L~i~~c~~l~~l  558 (623)
                      ++|++|+|++|+++++.
T Consensus         2 ~~L~~L~l~~C~~itD~   18 (26)
T smart00367        2 PNLRELDLSGCTNITDE   18 (26)
T ss_pred             CCCCEeCCCCCCCcCHH
Confidence            45555555555555544

>smart00370 LRR Leucine-rich repeats, outliers

Probab=86.98  E-value=0.51  Score=26.42  Aligned_cols=18  Identities=39%  Similarity=0.547  Sum_probs=11.0

Q ss_pred             cCCcEEEcCCCCCccccc
Q 036269          131 SLLEILDLSESDVSEIPV  148 (623)
Q Consensus       131 ~~L~~L~l~~~~i~~lp~  148 (623)
                      .+|++|++++|.++.+|.
T Consensus         2 ~~L~~L~L~~N~l~~lp~   19 (26)
T smart00370        2 PNLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCCEEECCCCcCCcCCH
Confidence            456666666666666654

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=86.98  E-value=0.51  Score=26.42  Aligned_cols=18  Identities=39%  Similarity=0.547  Sum_probs=11.0

Q ss_pred             cCCcEEEcCCCCCccccc
Q 036269          131 SLLEILDLSESDVSEIPV  148 (623)
Q Consensus       131 ~~L~~L~l~~~~i~~lp~  148 (623)
                      .+|++|++++|.++.+|.
T Consensus         2 ~~L~~L~L~~N~l~~lp~   19 (26)
T smart00369        2 PNLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCCEEECCCCcCCcCCH
Confidence            456666666666666654

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=83.12  E-value=0.052  Score=48.81  Aligned_cols=80  Identities=21%  Similarity=0.219  Sum_probs=39.3

Q ss_pred             CCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCCcCCCCcccccCCcCCcEE
Q 036269           57 CPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEIL  136 (623)
Q Consensus        57 ~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~i~~~~~l~~L~~L  136 (623)
                      ....+.||++.|+...+... |+.++.|..|+++.+.+   ..+|..+.....++.++..                    
T Consensus        41 ~kr~tvld~~s~r~vn~~~n-~s~~t~~~rl~~sknq~---~~~~~d~~q~~e~~~~~~~--------------------   96 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLVNLGKN-FSILTRLVRLDLSKNQI---KFLPKDAKQQRETVNAASH--------------------   96 (326)
T ss_pred             cceeeeehhhhhHHHhhccc-hHHHHHHHHHhccHhhH---hhChhhHHHHHHHHHHHhh--------------------
Confidence            34455555555554433332 24445555555555554   4445444444444444444                    


Q ss_pred             EcCCCCCccccccccCCCccCEEeccC
Q 036269          137 DLSESDVSEIPVSFGRLGHLRLLDLTD  163 (623)
Q Consensus       137 ~l~~~~i~~lp~~i~~l~~L~~L~l~~  163 (623)
                         .|+.+..|.++++.+++++++..+
T Consensus        97 ---~n~~~~~p~s~~k~~~~k~~e~k~  120 (326)
T KOG0473|consen   97 ---KNNHSQQPKSQKKEPHPKKNEQKK  120 (326)
T ss_pred             ---ccchhhCCccccccCCcchhhhcc
Confidence               444445555555555555555544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	623
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-16
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-15
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-14
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-14
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-14
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-15
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-13
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-12
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-11
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-09
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-10
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-10
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-08
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	6e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	9e-08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	7e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	8e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	6e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	5e-05
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	2e-04

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 85.8 bits (213), Expect = 1e-18
 Identities = 35/162 (21%), Positives = 55/162 (33%), Gaps = 10/162 (6%)

Query: 33  NTFEDLTGISLMFNDIHEVHEGL--QCPRLQALFLQKNDL--LDIPDPFFQGMKDLKVLD 88
                 T + L  N +  +  G+  +  +L  L L  N L           G   LK LD
Sbjct: 25  GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84

Query: 89  LGGSGVFSLFSLPSSLSFLINLRTLSLHDCQ--HFGDLSLIGELSLLEILDLSESDVSEI 146
           L  +    + ++ S+   L  L  L           + S+   L  L  LD+S +     
Sbjct: 85  LSFN---GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 141

Query: 147 PV-SFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMS 187
               F  L  L +L +      E     + + LR L  L +S
Sbjct: 142 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 77.4 bits (191), Expect = 1e-15
 Identities = 31/157 (19%), Positives = 63/157 (40%), Gaps = 10/157 (6%)

Query: 38  LTGISLMFNDIHEVHEGLQ-CPRLQALFLQKNDLLDIPDP-FFQGMKDLKVLDLGGSGVF 95
           L  + L FN +  +        +L+ L  Q ++L  + +   F  +++L  LD+  +   
Sbjct: 80  LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT--- 136

Query: 96  SLFSLPS-SLSFLINLRTLSLHDCQHFGDLS--LIGELSLLEILDLSESDVSEIPV-SFG 151
                 +   + L +L  L +       +    +  EL  L  LDLS+  + ++   +F 
Sbjct: 137 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 196

Query: 152 RLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSK 188
            L  L++L+++   N   +       L  L+ L  S 
Sbjct: 197 SLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSL 232

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 37/174 (21%), Positives = 55/174 (31%), Gaps = 29/174 (16%)

Query: 57  CPR-----LQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLR 111
           CP         +      L  +P            L+L  + + SL         L  L 
Sbjct: 1   CPSRCSCSGTEIRCNSKGLTSVPTGIP---SSATRLELESNKLQSLP--HGVFDKLTQLT 55

Query: 112 TLSLHDCQ----HFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNL 167
            LSL             S  G  + L+ LDLS + V  +  +F  L  L  LD       
Sbjct: 56  KLSLSSNGLSFKGCCSQSDFG-TTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK 114

Query: 168 ELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHI 221
           ++    V   LR L  L +S T              + +    G  + L+SL +
Sbjct: 115 QMSEFSVFLSLRNLIYLDISHT--------------HTRVAFNGIFNGLSSLEV 154

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 44.2 bits (105), Expect = 8e-05
 Identities = 15/99 (15%), Positives = 36/99 (36%), Gaps = 11/99 (11%)

Query: 26  LKDWPSINTFEDLTG---ISLMFNDIHEVHEGL--QCPRLQALFLQKNDLLDIPDPFFQG 80
            +++   + F +L     + L    + ++          LQ L +  N+   +    ++ 
Sbjct: 163 QENFLP-DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 221

Query: 81  MKDLKVLDLGGSGVFSLFSLPSSL--SFLINLRTLSLHD 117
           +  L+VLD   +    + +        F  +L  L+L  
Sbjct: 222 LNSLQVLDYSLN---HIMTSKKQELQHFPSSLAFLNLTQ 257

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 83.6 bits (207), Expect = 4e-17
 Identities = 34/160 (21%), Positives = 54/160 (33%), Gaps = 8/160 (5%)

Query: 33  NTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDL--LDIPDPFFQGMKDLKVLDLG 90
              + L  ++   N        +  P L+ L L +N L           G   LK LDL 
Sbjct: 322 LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381

Query: 91  GSGVFSLFSLPSSLSFLINLRTLSLHDCQ--HFGDLSLIGELSLLEILDLSESDVSEIPV 148
            +    + ++ S+   L  L  L           + S+   L  L  LD+S +       
Sbjct: 382 FN---GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 438

Query: 149 S-FGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMS 187
             F  L  L +L +      E     + + LR L  L +S
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 76.3 bits (188), Expect = 9e-15
 Identities = 34/155 (21%), Positives = 70/155 (45%), Gaps = 8/155 (5%)

Query: 38  LTGISLMFNDIHEVHEG-LQCPRLQALFLQKNDLLDIPDP-FFQGMKDLKVLDLGGSGVF 95
           L  + L FN +  +    L   +L+ L  Q ++L  + +   F  +++L  LD+  +   
Sbjct: 375 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434

Query: 96  SLFSLPSSLSFLINLRTLSLHDCQHFGDLS--LIGELSLLEILDLSESDVSEIPVS-FGR 152
             F      + L +L  L +       +    +  EL  L  LDLS+  + ++  + F  
Sbjct: 435 VAF--NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492

Query: 153 LGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMS 187
           L  L++L++     L+ +P G+  RL  L+++++ 
Sbjct: 493 LSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLH 526

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 75.5 bits (186), Expect = 2e-14
 Identities = 71/391 (18%), Positives = 134/391 (34%), Gaps = 41/391 (10%)

Query: 33  NTFEDLTGISLMFNDIHEVHEGL--QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLG 90
           N       + L FN +  +        P LQ L L + ++  I D  +Q +  L  L L 
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84

Query: 91  GSGVFSLFSLPS-SLSFLINLRTLSLHDCQHFGDLS--LIGELSLLEILDLSESDVSEIP 147
           G+    + SL   + S L +L+ L   +      L    IG L  L+ L+++ + +    
Sbjct: 85  GN---PIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFK 140

Query: 148 V--SFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNA 205
           +   F  L +L  LDL+    ++ I    L  L ++  L +S           D S +  
Sbjct: 141 LPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSL----------DLSLNPM 189

Query: 206 KFIELGALS--RLTSLHIDIPEGEIMPSDMSFQNLTSFSITIGGPEEVPLSDFIEVFSRK 263
            FI+ GA    RL  L +      +       Q L    +      E      +E F + 
Sbjct: 190 NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKS 249

Query: 264 FKKRCSRAMGLSQDMRISALPSWIKNLLLRSEILALGDVNDL-ENIVSDLAHDGFNELMF 322
             +          + R++ L  ++ +++     L       L    +  +    +N    
Sbjct: 250 ALEGLCNLTIE--EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGW- 306

Query: 323 LAIVGCNEMKYLLNSLERTLRVTLLKLEWLMIVDNRNFVEICHGQLPAGC-LSNVKRLDV 381
                   ++ +     +   + L  L+ L    N+       G   +   L +++ LD+
Sbjct: 307 ------QHLELVNCKFGQFPTLKLKSLKRLTFTSNK------GGNAFSEVDLPSLEFLDL 354

Query: 382 RDCGSVLKILPSHLVQSFQNLQRLRVEGCEL 412
              G   K   S       +L+ L +    +
Sbjct: 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 385

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 63.2 bits (154), Expect = 1e-10
 Identities = 43/191 (22%), Positives = 62/191 (32%), Gaps = 26/191 (13%)

Query: 33  NTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGS 92
           N   +++  SL+   I  V +       Q L L        P      +K LK L    +
Sbjct: 279 NCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP---TLKLKSLKRLTFTSN 335

Query: 93  GVFSLFSLPSSLSFLINLRTLSLHDCQ----HFGDLSLIGELSLLEILDLSESDVSEIPV 148
              + FS       L +L  L L             S  G  + L+ LDLS + V  +  
Sbjct: 336 KGGNAFSE----VDLPSLEFLDLSRNGLSFKGCCSQSDFG-TTSLKYLDLSFNGVITMSS 390

Query: 149 SFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFI 208
           +F  L  L  LD       ++    V   LR L  L +S T                   
Sbjct: 391 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR--------------VA 436

Query: 209 ELGALSRLTSL 219
             G  + L+SL
Sbjct: 437 FNGIFNGLSSL 447

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 44.7 bits (106), Expect = 7e-05
 Identities = 66/421 (15%), Positives = 130/421 (30%), Gaps = 67/421 (15%)

Query: 25  ELKDWPSINTFEDLTGISLMFNDIHEVHEG-------LQCPRLQALFLQKNDLLDIPDPF 77
             K     +   +L  + L  N I  ++         +    L  L L  N +  I    
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS-LDLSLNPMNFIQPGA 196

Query: 78  FQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFG-------DLSLIGEL 130
           F+ ++ L  L L  +   SL  + + +  L  L    L   +          D S +  L
Sbjct: 197 FKEIR-LHKLTLRNNF-DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254

Query: 131 SLLEILDLSESDV----SEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYM 186
             L I +   + +     +I   F  L ++    L       +         + LE +  
Sbjct: 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNC 314

Query: 187 SKT-FCHWQFEN-EDDSRSNAKFIELGALSRLTSLHI----DIPEGEIMPSDMSFQNLTS 240
               F   + ++ +  + ++ K     +   L SL                  S    TS
Sbjct: 315 KFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS 374

Query: 241 FSITIGGPEEVPLSD-FIEVFSRKFKKRCSRAMGLSQ----DM---RISALPSWIKNLLL 292
                   + + LS   +   S  F       +GL Q    D     +  +  +   L L
Sbjct: 375 -------LKYLDLSFNGVITMSSNF-------LGLEQLEHLDFQHSNLKQMSEFSVFLSL 420

Query: 293 RS-EILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLLKLEW 351
           R+   L +          +    +G + L  L + G +       +    +   L  L +
Sbjct: 421 RNLIYLDISH-THTRVAFNG-IFNGLSSLEVLKMAGNS----FQENFLPDIFTELRNLTF 474

Query: 352 LMIVDNRNFVEICHGQLPAGC---LSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVE 408
           L +   +    +    L       LS+++ L++      LK +P  +     +LQ++ + 
Sbjct: 475 LDLSQCQ----LEQ--LSPTAFNSLSSLQVLNMASNQ--LKSVPDGIFDRLTSLQKIWLH 526

Query: 409 G 409
            
Sbjct: 527 T 527

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 80.4 bits (199), Expect = 6e-17
 Identities = 49/198 (24%), Positives = 68/198 (34%), Gaps = 34/198 (17%)

Query: 33  NTFEDLTGISLMFNDIHEVHEGL--QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLG 90
                   I L  N I  V       C  L  L+L  N L  I    F G+  L+ LDL 
Sbjct: 29  GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL- 87

Query: 91  GSGVFSLFSLPSS-LSFLINLRTLSLHDCQHFGDLSLIGE-----LSLLEILDLSESDVS 144
            S    L S+  +    L  L TL L  C     L  +G      L+ L+ L L ++ + 
Sbjct: 88  -SDNAQLRSVDPATFHGLGRLHTLHLDRCG----LQELGPGLFRGLAALQYLYLQDNALQ 142

Query: 145 EIPV-SFGRLGHLRLLDLTDCYN-LELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSR 202
            +P  +F  LG+L  L L    N +  +P      L  L+ L +                
Sbjct: 143 ALPDDTFRDLGNLTHLFLH--GNRISSVPERAFRGLHSLDRLLLH--------------- 185

Query: 203 SNA-KFIELGALSRLTSL 219
            N    +   A   L  L
Sbjct: 186 QNRVAHVHPHAFRDLGRL 203

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 37/135 (27%), Positives = 59/135 (43%), Gaps = 16/135 (11%)

Query: 38  LTGISLMFNDIHEVHEGL--QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVF 95
           L  + L    + E+  GL      LQ L+LQ N L  +PD  F+ + +L  L L G+   
Sbjct: 107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN--- 163

Query: 96  SLFSLPS-SLSFLINLRTLSLHDCQHFGDLSLIGE-----LSLLEILDLSESDVSEIPVS 149
            + S+P  +   L +L  L LH  +    ++ +       L  L  L L  +++S +P  
Sbjct: 164 RISSVPERAFRGLHSLDRLLLHQNR----VAHVHPHAFRDLGRLMTLYLFANNLSALPTE 219

Query: 150 -FGRLGHLRLLDLTD 163
               L  L+ L L D
Sbjct: 220 ALAPLRALQYLRLND 234

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 12/98 (12%)

Query: 96  SLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGE-----LSLLEILDLSESDVSEIPV-S 149
            L ++P  +      + + LH  +    +S +          L IL L  + ++ I   +
Sbjct: 22  GLQAVPVGIP--AASQRIFLHGNR----ISHVPAASFRACRNLTILWLHSNVLARIDAAA 75

Query: 150 FGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMS 187
           F  L  L  LDL+D   L  +       L +L  L++ 
Sbjct: 76  FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD 113

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 82.9 bits (205), Expect = 8e-17
 Identities = 58/390 (14%), Positives = 123/390 (31%), Gaps = 33/390 (8%)

Query: 42  SLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLP 101
                    +  GL    +++L L  N +  I     +   +L+VL L  S + ++    
Sbjct: 11  DGRSRSFTSIPSGL-TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIE--G 67

Query: 102 SSLSFLINLRTLSLHDCQHFGDLS--LIGELSLLEILDLSESDVSEIPVS--FGRLGHLR 157
            +   L +L  L L D      LS    G LS L+ L+L  +    + V+  F  L +L+
Sbjct: 68  DAFYSLGSLEHLDLSDNH-LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQ 126

Query: 158 LLDLTDCYNLELIPRGVLSRLRKLEELYMS---------KTFCH-WQFENEDDSRSNAKF 207
            L + +      I R   + L  L EL +          ++        +     S + F
Sbjct: 127 TLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF 186

Query: 208 IELGALSRLTSLH----IDIPEGEIMPSDMSFQNLTSFSITIGGPEEVPLSDFIEVFSRK 263
           +       L+S+      D        S +    ++S    +     V   +      + 
Sbjct: 187 LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKL 246

Query: 264 FKKRCSRAMGLSQDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFL 323
            +     +     D  ++ L  +  +       L   +   +  +   +        +  
Sbjct: 247 LRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRL--HIPQFYLFYDLST 304

Query: 324 AIVGCNEMKYL------LNSLERTLRVTLLKLEWLMIVDNRNFVEICHGQLPAGCLSNVK 377
                 ++K +      +  +  +    L  LE+L + +N    E        G   +++
Sbjct: 305 VYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQ 364

Query: 378 RLDVRDCGSVLKILPSHLVQSFQNLQRLRV 407
            L +      L+ +     +    L+ L  
Sbjct: 365 TLVLSQNH--LRSMQKT-GEILLTLKNLTS 391

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 65.5 bits (160), Expect = 3e-11
 Identities = 27/162 (16%), Positives = 58/162 (35%), Gaps = 11/162 (6%)

Query: 33  NTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGS 92
            T   L   +   +D+      ++   ++ L + +  L       +  ++ +K + +  S
Sbjct: 261 CTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS 320

Query: 93  GVFSLFSLPSSLSFLINLRTLSLHDCQ----HFGDLSLIGELSLLEILDLSE---SDVSE 145
            VF +    S    L +L  L L +      +  + +  G    L+ L LS+     + +
Sbjct: 321 KVFLVP--CSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQK 378

Query: 146 IPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMS 187
                  L +L  LD++       +P        K+  L +S
Sbjct: 379 TGEILLTLKNLTSLDISRN-TFHPMPDS-CQWPEKMRFLNLS 418

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 64.4 bits (157), Expect = 6e-11
 Identities = 32/174 (18%), Positives = 68/174 (39%), Gaps = 31/174 (17%)

Query: 37  DLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDP--FFQGMKDLKVLDLGGSGV 94
           DL+   ++   +         P LQ L L +N L  +         +K+L  LD+  +  
Sbjct: 340 DLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN-- 397

Query: 95  FSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLI--GELSLLEILDLSESDVSEIPVSFGR 152
            +   +P S  +   +R L+L        + ++       LE+LD+S +++    +   R
Sbjct: 398 -TFHPMPDSCQWPEKMRFLNLSSTG----IRVVKTCIPQTLEVLDVSNNNLDSFSLFLPR 452

Query: 153 LGHLRL-------------------LDLTDCYNLELIPRGVLSRLRKLEELYMS 187
           L  L +                   + ++    L+ +P G+  RL  L+++++ 
Sbjct: 453 LQELYISRNKLKTLPDASLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLH 505

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.5 bits (108), Expect = 4e-05
 Identities = 11/54 (20%), Positives = 23/54 (42%)

Query: 38  LTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGG 91
           L  + +  N +  + +    P L  + + +N L  +PD  F  +  L+ + L  
Sbjct: 453 LQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHT 506

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 82.1 bits (203), Expect = 8e-17
 Identities = 55/196 (28%), Positives = 82/196 (41%), Gaps = 29/196 (14%)

Query: 33  NTFEDLTG---ISLMFNDIHEVHEGL--QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVL 87
           N+F+ L     + L  N I  +  G       L  L L  N L  IP+  F  +  LK L
Sbjct: 82  NSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKEL 141

Query: 88  DLGGSGVFSLFSLPSSL-SFLINLRTLSLHDCQHFGDLS---LIGELSLLEILDLSESDV 143
            L  +    + S+PS   + + +LR L L + +    +S     G LS L  L+L+  ++
Sbjct: 142 WLRNN---PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG-LSNLRYLNLAMCNL 197

Query: 144 SEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRS 203
            EIP +   L  L  LDL+   +L  I  G    L  L++L+M               +S
Sbjct: 198 REIP-NLTPLIKLDELDLSGN-HLSAIRPGSFQGLMHLQKLWM--------------IQS 241

Query: 204 NAKFIELGALSRLTSL 219
             + IE  A   L SL
Sbjct: 242 QIQVIERNAFDNLQSL 257

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 81.7 bits (202), Expect = 1e-16
 Identities = 47/196 (23%), Positives = 77/196 (39%), Gaps = 27/196 (13%)

Query: 33  NTFEDLTG---ISLMFNDIHEVHEGL--QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVL 87
             F  L     + L  N +  +  G      +L+ L+L+ N +  IP   F  +  L+ L
Sbjct: 106 GAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRL 165

Query: 88  DLGGSGVFSLFSLPS-SLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVSEI 146
           DLG      L  +   +   L NLR L+L  C    ++  +  L  L+ LDLS + +S I
Sbjct: 166 DLGELK--RLSYISEGAFEGLSNLRYLNLAMCN-LREIPNLTPLIKLDELDLSGNHLSAI 222

Query: 147 PV-SFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNA 205
              SF  L HL+ L +     +++I R     L+ L E+ ++                N 
Sbjct: 223 RPGSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINLA---------------HNN 266

Query: 206 -KFIELGALSRLTSLH 220
              +     + L  L 
Sbjct: 267 LTLLPHDLFTPLHHLE 282

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 79.8 bits (197), Expect = 5e-16
 Identities = 44/192 (22%), Positives = 77/192 (40%), Gaps = 29/192 (15%)

Query: 35  FEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGV 94
               + +  +  ++ EV +G+     + L L +N +  I    F+ ++ L++L L  + +
Sbjct: 42  SNQFSKVICVRKNLREVPDGIS-TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI 100

Query: 95  FSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGE-----LSLLEILDLSESDVSEIPV- 148
            ++     + + L NL TL L D +    L+ I       LS L+ L L  + +  IP  
Sbjct: 101 RTI--EIGAFNGLANLNTLELFDNR----LTTIPNGAFVYLSKLKELWLRNNPIESIPSY 154

Query: 149 SFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFI 208
           +F R+  LR LDL +   L  I  G    L  L  L +                +     
Sbjct: 155 AFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNL----------------AMCNLR 198

Query: 209 ELGALSRLTSLH 220
           E+  L+ L  L 
Sbjct: 199 EIPNLTPLIKLD 210

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 26/124 (20%), Positives = 47/124 (37%), Gaps = 11/124 (8%)

Query: 25  ELKDWPSI-----NTFEDLTG---ISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDP 76
           +L +   +       FE L+    ++L   ++ E+       +L  L L  N L  I   
Sbjct: 166 DLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPG 225

Query: 77  FFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQ-HFGDLSLIGELSLLEI 135
            FQG+  L+ L +  S +  +    ++   L +L  ++L           L   L  LE 
Sbjct: 226 SFQGLMHLQKLWMIQSQIQVI--ERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLER 283

Query: 136 LDLS 139
           + L 
Sbjct: 284 IHLH 287

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 81.3 bits (201), Expect = 2e-16
 Identities = 45/216 (20%), Positives = 76/216 (35%), Gaps = 46/216 (21%)

Query: 33  NTFEDLTGISLMFNDIHEVHEGL--QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLG 90
               +   ++LM N+I  +          L+ L L +N +  I    F G+  L  L+L 
Sbjct: 72  GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131

Query: 91  G-------SGVFS-LFSL--------------PSSLSFLINLRTLSLHDCQHFGDLS--- 125
                   SG F  L  L                + + + +L  L L + +    +S   
Sbjct: 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGA 191

Query: 126 LIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYN-LELIPRGVLSRLRKLEEL 184
             G L  L+ L+L   ++ ++P +   L  L  L+++   N    I  G    L  L++L
Sbjct: 192 FEG-LFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMS--GNHFPEIRPGSFHGLSSLKKL 247

Query: 185 YMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLH 220
           ++                S    IE  A   L SL 
Sbjct: 248 WV--------------MNSQVSLIERNAFDGLASLV 269

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 77.1 bits (190), Expect = 4e-15
 Identities = 41/159 (25%), Positives = 68/159 (42%), Gaps = 13/159 (8%)

Query: 35  FEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGV 94
               + +      + EV +G+     + L L +N++  I    F+ +  L+VL LG + +
Sbjct: 53  SNQFSKVVCTRRGLSEVPQGIP-SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111

Query: 95  FSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGE-----LSLLEILDLSESDVSEIPV- 148
             +     + + L +L TL L D      L++I       LS L  L L  + +  IP  
Sbjct: 112 RQI--EVGAFNGLASLNTLELFDNW----LTVIPSGAFEYLSKLRELWLRNNPIESIPSY 165

Query: 149 SFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMS 187
           +F R+  L  LDL +   LE I  G    L  L+ L + 
Sbjct: 166 AFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLG 204

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 24/101 (23%), Positives = 38/101 (37%), Gaps = 15/101 (14%)

Query: 31  SINTFEDLTG---ISLMFNDIHEVHEGL--QCPRLQALFLQKNDLLDIPDPFFQGMKDLK 85
            +     L G   + +  N   E+  G       L+ L++  + +  I    F G+  L 
Sbjct: 210 DMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLV 269

Query: 86  VLDLGGSGVFSLFSLPSS-LSFLINLRTLSLH------DCQ 119
            L+L  +   +L SLP    + L  L  L LH      DC 
Sbjct: 270 ELNLAHN---NLSSLPHDLFTPLRYLVELHLHHNPWNCDCD 307

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 31/171 (18%), Positives = 56/171 (32%), Gaps = 57/171 (33%)

Query: 25  ELKDWPSI-----NTFEDLTG---ISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDP 76
           +L +   +       FE L     ++L   +I ++        L+ L +  N   +I   
Sbjct: 177 DLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPG 236

Query: 77  FFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEIL 136
            F G+                           +L+ L + + Q          +SL+E  
Sbjct: 237 SFHGLS--------------------------SLKKLWVMNSQ----------VSLIE-- 258

Query: 137 DLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMS 187
                       +F  L  L  L+L    NL  +P  + + LR L EL++ 
Sbjct: 259 ----------RNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLH 298

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 41.7 bits (98), Expect = 6e-04
 Identities = 50/301 (16%), Positives = 95/301 (31%), Gaps = 88/301 (29%)

Query: 133 LEILDLSESDVSEIPV-SFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFC 191
              L+L E+++  I   +F  L HL +L L    ++  I  G  + L  L  L +     
Sbjct: 77  TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELF---- 131

Query: 192 HWQFENEDDSRSNA-KFIELGA---LSRLTSLHID------IPEGEIMPSDMSFQNLTSF 241
                       N    I  GA   LS+L  L +       IP         +F  + S 
Sbjct: 132 -----------DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSY-------AFNRVPS- 172

Query: 242 SITIGGPEEVPLSDFIEVFSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEILALGD 301
                      L                  + L +  ++  +       L   + L LG 
Sbjct: 173 -----------L----------------MRLDLGELKKLEYISEGAFEGLFNLKYLNLGM 205

Query: 302 VNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLLKLEWLMIVDNRNFV 361
             +++++ +         L  L + G N        +       L  L+ L +++++   
Sbjct: 206 -CNIKDMPNL---TPLVGLEELEMSG-NH----FPEIRPGSFHGLSSLKKLWVMNSQ--- 253

Query: 362 EICHGQLPAG---CLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEG------CEL 412
            +    +       L+++  L++      L  LP  L    + L  L +        C++
Sbjct: 254 -VSL--IERNAFDGLASLVELNLAHNN--LSSLPHDLFTPLRYLVELHLHHNPWNCDCDI 308

Query: 413 L 413
           L
Sbjct: 309 L 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 80.9 bits (200), Expect = 2e-16
 Identities = 42/196 (21%), Positives = 73/196 (37%), Gaps = 33/196 (16%)

Query: 35  FEDLTGISLMFNDIHEVHEGL--QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGS 92
             +   + L  N I  +++      P L+ L L +N +  +    F  + +L+ L L  +
Sbjct: 31  PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90

Query: 93  GVFSLFSLPS-SLSFLINLRTLSLHDCQHFGDLSLIGE-----LSLLEILDLSESDVSEI 146
               L  +P    + L NL  L + + +    + ++ +     L  L+ L++ ++D+  I
Sbjct: 91  ---RLKLIPLGVFTGLSNLTKLDISENK----IVILLDYMFQDLYNLKSLEVGDNDLVYI 143

Query: 147 PV-SFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNA 205
              +F  L  L  L L  C NL  IP   LS L  L  L +                   
Sbjct: 144 SHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLR---------------HLN 187

Query: 206 -KFIELGALSRLTSLH 220
              I   +  RL  L 
Sbjct: 188 INAIRDYSFKRLYRLK 203

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 78.6 bits (194), Expect = 1e-15
 Identities = 44/213 (20%), Positives = 80/213 (37%), Gaps = 47/213 (22%)

Query: 38  LTGISLMFNDIHEVHEGL--QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVF 95
           LT + +  N I  + + +      L++L +  NDL+ I    F G+  L+ L L      
Sbjct: 106 LTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC--- 162

Query: 96  SLFSLPS-SLSFLINLRTLSLHDCQ-------HFGDLSLIGELSL--------------- 132
           +L S+P+ +LS L  L  L L            F  L  +  L +               
Sbjct: 163 NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY 222

Query: 133 ---LEILDLSESDVSEIP-VSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSK 188
              L  L ++  +++ +P ++   L +LR L+L+    +  I   +L  L +L+E+ +  
Sbjct: 223 GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN-PISTIEGSMLHELLRLQEIQL-- 279

Query: 189 TFCHWQFENEDDSRSNAKFIELGALSRLTSLHI 221
                              +E  A   L  L +
Sbjct: 280 ------------VGGQLAVVEPYAFRGLNYLRV 300

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 75.9 bits (187), Expect = 1e-14
 Identities = 43/186 (23%), Positives = 70/186 (37%), Gaps = 32/186 (17%)

Query: 33  NTFEDLTG---ISLMFNDIHEVHEGL--QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVL 87
             F +L     + L  N +  +  G+      L  L + +N ++ + D  FQ + +LK L
Sbjct: 74  GAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSL 133

Query: 88  DLGG-------SGVFS-LFSL--------------PSSLSFLINLRTLSLHDCQ--HFGD 123
           ++G           FS L SL                +LS L  L  L L         D
Sbjct: 134 EVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRD 193

Query: 124 LSLIGELSLLEILDLSESD-VSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLE 182
            S    L  L++L++S    +  +  +     +L  L +T C NL  +P   +  L  L 
Sbjct: 194 YSFKR-LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLR 251

Query: 183 ELYMSK 188
            L +S 
Sbjct: 252 FLNLSY 257

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.5 bits (108), Expect = 4e-05
 Identities = 23/106 (21%), Positives = 39/106 (36%), Gaps = 7/106 (6%)

Query: 38  LTGISLMFNDIHEVHEGL--QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVF 95
           LT +S+   ++  V          L+ L L  N +  I       +  L+ + L G    
Sbjct: 226 LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGG--- 282

Query: 96  SLFSLPS-SLSFLINLRTLSLHDCQ-HFGDLSLIGELSLLEILDLS 139
            L  +   +   L  LR L++   Q    + S+   +  LE L L 
Sbjct: 283 QLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILD 328

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 5/64 (7%)

Query: 33  NTFED---LTGISLMFNDIHEVHEGL--QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVL 87
           +   +   L  I L+   +  V          L+ L +  N L  + +  F  + +L+ L
Sbjct: 266 SMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETL 325

Query: 88  DLGG 91
            L  
Sbjct: 326 ILDS 329

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 80.4 bits (199), Expect = 6e-16
 Identities = 76/440 (17%), Positives = 143/440 (32%), Gaps = 48/440 (10%)

Query: 35  FEDLTGISLMFNDIHEVHEGL--QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGS 92
                 +   FN +  +      +   L  L L +  +  I +  FQ    L  L L  +
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91

Query: 93  GVFSLFSLPS-SLSFLINLRTLSLHDCQ-HFGDLSLIGELSLLEILDLSESDVSEIPV-S 149
               L  +   +LS    L+ L          D   +     LE L L  + +S I +  
Sbjct: 92  ---PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPK 148

Query: 150 FGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIE 209
                 L++LD  +   +  + +  +S L++   L +            + + ++   IE
Sbjct: 149 GFPTEKLKVLDFQNN-AIHYLSKEDMSSLQQATNLSL------------NLNGNDIAGIE 195

Query: 210 LGALSRLTSLHIDIPEGEIMPSDM-SFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRC 268
            GA        ++    + +       +N T  S+ +G  E++   D          +  
Sbjct: 196 PGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMS 255

Query: 269 SRAMGLSQDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGC 328
             ++ L        + S   +     + L L     L  + S L   G + L  L +   
Sbjct: 256 VESINLQ-KHYFFNISSNTFHCFSGLQELDLTA-THLSELPSGLV--GLSTLKKLVLSAN 311

Query: 329 NEMKYLLNSLERTLRVTLLKLEWLMIVDNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVL 388
                   +L +        L  L I  N   +E+  G L    L N++ LD+       
Sbjct: 312 K-----FENLCQISASNFPSLTHLSIKGNTKRLELGTGCL--ENLENLRELDLSHDDIET 364

Query: 389 KILPSHLVQSFQNLQRLRVEGCELLVSVFEIERVNIAKEETELFSSLEKLTLIGLP--RM 446
               +  +++  +LQ L +                    +TE F    +L L+ L   R+
Sbjct: 365 SDCCNLQLRNLSHLQSLNLSYN------------EPLSLKTEAFKECPQLELLDLAFTRL 412

Query: 447 TDIWKGDTQFVSLHDLKKIR 466
                  + F +LH LK + 
Sbjct: 413 KVKDA-QSPFQNLHLLKVLN 431

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 79.3 bits (196), Expect = 1e-15
 Identities = 40/191 (20%), Positives = 77/191 (40%), Gaps = 17/191 (8%)

Query: 38  LTGISLMFNDIHEVHEGL--QCPRLQALFLQKNDL-LDIPDPFFQGMKDLKVLDLGGSGV 94
           L  + L  N    + +      P L  L ++ N   L++     + +++L+ LDL    +
Sbjct: 303 LKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDI 362

Query: 95  FSLFSLPSSLSFLINLRTLSLHDCQHFGDLS--LIGELSLLEILDLSESDVSEI--PVSF 150
            +       L  L +L++L+L   +    L      E   LE+LDL+ + +        F
Sbjct: 363 ETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPF 421

Query: 151 GRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIEL 210
             L  L++L+L+    L++    +   L  L+ L +        F   +  ++N+    L
Sbjct: 422 QNLHLLKVLNLSHS-LLDISSEQLFDGLPALQHLNLQ----GNHFPKGNIQKTNS----L 472

Query: 211 GALSRLTSLHI 221
             L RL  L +
Sbjct: 473 QTLGRLEILVL 483

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 77.4 bits (191), Expect = 5e-15
 Identities = 43/214 (20%), Positives = 78/214 (36%), Gaps = 28/214 (13%)

Query: 38  LTGISLMFNDIHEVHEGLQ----CPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSG 93
           L  + L  +DI               LQ+L L  N+ L +    F+    L++LDL  + 
Sbjct: 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR 411

Query: 94  VFSLFSLPSSLSFLINLRTLSLHDCQ-HFGDLSLIGELSLLEILDLSESDVSEIPV---- 148
           +    +  S    L  L+ L+L           L   L  L+ L+L  +   +  +    
Sbjct: 412 LKVKDA-QSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTN 470

Query: 149 SFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNA-KF 207
           S   LG L +L L+ C +L  I +   + L+ +  + +S                N    
Sbjct: 471 SLQTLGRLEILVLSFC-DLSSIDQHAFTSLKMMNHVDLS---------------HNRLTS 514

Query: 208 IELGALSRLTSLHIDIPEGEI-MPSDMSFQNLTS 240
             + ALS L  +++++    I +        L+ 
Sbjct: 515 SSIEALSHLKGIYLNLASNHISIILPSLLPILSQ 548

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 73.9 bits (182), Expect = 6e-14
 Identities = 69/434 (15%), Positives = 138/434 (31%), Gaps = 61/434 (14%)

Query: 38  LTGISLMFNDIHEVHEGL--QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVF 95
           L  + L  N +  + E        L+ LF  +  +  I        K L+ L LG + + 
Sbjct: 83  LDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHIS 142

Query: 96  SLFSLPSSLSFLINLRTLSLHDCQ----HFGDLSLIGELSLLEILDLSESDVSEIPVSFG 151
           S+            L+ L   +         D+S + + + L  L+L+ +D++ I     
Sbjct: 143 SIK--LPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLS-LNLNGNDIAGIEPGAF 199

Query: 152 RLGHLRLLDLTDCYNLELIPRG-VLSRLRKLEELYMS------------KTFCHWQFENE 198
                + L+     NL +I +G   S ++ L                  +  C    E+ 
Sbjct: 200 DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESI 259

Query: 199 DDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSDMSFQNLTSFSITIGGPEEV------- 251
           +  +     I        + L            D++  +L+     + G   +       
Sbjct: 260 NLQKHYFFNISSNTFHCFSGLQEL---------DLTATHLSELPSGLVGLSTLKKLVLSA 310

Query: 252 -PLSDFIEVFSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEILALGDVNDLENI-V 309
               +  ++ +  F       + +  + +   L +     L     L L   +D+E    
Sbjct: 311 NKFENLCQISASNFPSL--THLSIKGNTKRLELGTGCLENLENLRELDLSH-DDIETSDC 367

Query: 310 SDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLLKLEWLMIVDNRNFVEICHGQLP 369
            +L     + L  L +           SL+        +LE L +   R  +++   Q P
Sbjct: 368 CNLQLRNLSHLQSLNLSYNE-----PLSLKTEAFKECPQLELLDLAFTR--LKVKDAQSP 420

Query: 370 AGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEIERVNIAKEET 429
              L  +K L++      L I    L      LQ L ++G                 ++T
Sbjct: 421 FQNLHLLKVLNLSHSL--LDISSEQLFDGLPALQHLNLQGNHF---------PKGNIQKT 469

Query: 430 ELFSSLEKLTLIGL 443
               +L +L ++ L
Sbjct: 470 NSLQTLGRLEILVL 483

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 80.0 bits (198), Expect = 8e-16
 Identities = 57/423 (13%), Positives = 132/423 (31%), Gaps = 70/423 (16%)

Query: 33  NTFEDLTGISLMFNDIHEVHEG--LQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLG 90
           +   ++T ++L  N +  +      +  +L +L +  N +  +     Q +  LKVL+L 
Sbjct: 22  DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ 81

Query: 91  G-------SGVFS-LFSL--------------PSSLSFLINLRTLSLHDCQHFG-DLSLI 127
                      F+   +L               +      NL TL L         L   
Sbjct: 82  HNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQ 141

Query: 128 GELSLLEILDLSE---SDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEEL 184
            +L  L+ L LS      +    +       L+ L+L+    ++    G    + +L  L
Sbjct: 142 VQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN-QIKEFSPGCFHAIGRLFGL 200

Query: 185 YMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSDMSFQNLTSFSIT 244
           +++          +       K     A + + +L             +S   L++ S T
Sbjct: 201 FLN--------NVQLGPSLTEKLCLELANTSIRNL------------SLSNSQLSTTSNT 240

Query: 245 IGGPEEVP------LSD-FIEVFSRKFKKRCSRAMGLS-QDMRISALPSWIKNLLLRSEI 296
                +        LS   + V          +      +   I  L S   + L     
Sbjct: 241 TFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRY 300

Query: 297 LALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYL------LNSLERTLRVTLLKLE 350
           L L            ++     ++   +      +++L      +  ++  +   L+ L+
Sbjct: 301 LNLKR----SFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLK 356

Query: 351 WLMIVDNR-NFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEG 409
           +L + ++  +   + +    +   S +  L++      +  + S       +L+ L +  
Sbjct: 357 YLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNK--ISKIESDAFSWLGHLEVLDLGL 414

Query: 410 CEL 412
            E+
Sbjct: 415 NEI 417

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 80.0 bits (198), Expect = 9e-16
 Identities = 37/163 (22%), Positives = 62/163 (38%), Gaps = 14/163 (8%)

Query: 38  LTGISLMFNDIHEVHEG---LQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGV 94
           L  + L  N+I +   G        +  ++L  N  L +    F  +  L+ L L    +
Sbjct: 407 LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVAL 466

Query: 95  FSLFSLPSSLSFLINLRTLSLHDCQ-HFGDLSLIGELSLLEILDLS---------ESDVS 144
            ++ S PS    L NL  L L +      +  ++  L  LEILDL           ++  
Sbjct: 467 KNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPG 526

Query: 145 EIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMS 187
                   L HL +L+L      + IP  V   L +L+ + + 
Sbjct: 527 GPIYFLKGLSHLHILNLESN-GFDEIPVEVFKDLFELKIIDLG 568

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 79.7 bits (197), Expect = 1e-15
 Identities = 71/431 (16%), Positives = 140/431 (32%), Gaps = 59/431 (13%)

Query: 38  LTGISLMFNDIHEVHEG----LQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGG-S 92
           L  + L  N I  +            L+ L L  N + +     F  +  L  L L    
Sbjct: 147 LQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQ 206

Query: 93  GVFSLFSLPSSLSFLINLRTLSLHDCQ--HFGDLSLIG-ELSLLEILDLSESDVSEI-PV 148
              SL           ++R LSL + Q     + + +G + + L +LDLS ++++ +   
Sbjct: 207 LGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGND 266

Query: 149 SFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFI 208
           SF  L  L    L    N++ +    L  L  +  L + ++     F  +  S ++   I
Sbjct: 267 SFAWLPQLEYFFLEYN-NIQHLFSHSLHGLFNVRYLNLKRS-----FTKQSISLASLPKI 320

Query: 209 ELGALSRLTSLHI---------DIPEGEIMPSDMSFQNLTS-----FSITIGGPEEVPLS 254
           +  +   L  L            I           F  L +      S +      +   
Sbjct: 321 DDFSFQWLKCLEHLNMEDNDIPGIKSN-------MFTGLINLKYLSLSNSFTSLRTLTNE 373

Query: 255 DFIEVFSRKFKKRCSRAMGLS-QDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLA 313
            F+ +              L+    +IS + S   + L   E+L LG  N++   ++   
Sbjct: 374 TFVSLAHSPLHI-------LNLTKNKISKIESDAFSWLGHLEVLDLGL-NEIGQELTGQE 425

Query: 314 HDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLLKLEWLMIVDNR-NFVEICHGQLPAGC 372
             G   +  + +            L R     +  L+ LM+       V+          
Sbjct: 426 WRGLENIFEIYLSYNK-----YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF--QP 478

Query: 373 LSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEIERVNIAKEETELF 432
           L N+  LD+ +    +  +   +++  + L+ L ++   L      + +           
Sbjct: 479 LRNLTILDLSNNN--IANINDDMLEGLEKLEILDLQHNNLA----RLWKHANPGGPIYFL 532

Query: 433 SSLEKLTLIGL 443
             L  L ++ L
Sbjct: 533 KGLSHLHILNL 543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 66.6 bits (163), Expect = 1e-11
 Identities = 23/131 (17%), Positives = 54/131 (41%), Gaps = 8/131 (6%)

Query: 59  RLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDC 118
             +        L  +PD       ++ VL+L  + +  L    ++ +    L +L +   
Sbjct: 5   SHEVADCSHLKLTQVPDDLP---TNITVLNLTHNQLRRL--PAANFTRYSQLTSLDVGFN 59

Query: 119 Q-HFGDLSLIGELSLLEILDLSESDVSEIPV-SFGRLGHLRLLDLTDCYNLELIPRGVLS 176
                +  L  +L +L++L+L  +++S++   +F    +L  L L    +++ I      
Sbjct: 60  TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFV 118

Query: 177 RLRKLEELYMS 187
           + + L  L +S
Sbjct: 119 KQKNLITLDLS 129

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 76.5 bits (189), Expect = 2e-15
 Identities = 37/170 (21%), Positives = 61/170 (35%), Gaps = 16/170 (9%)

Query: 29  WPSINTFEDLTGISLMFNDIHEVHEGL-QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVL 87
                    L  +++    + E+ + + Q   L+ L L +N L  +P      +  L+ L
Sbjct: 97  PDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIAS-LNRLREL 155

Query: 88  DLGGSGVFSLFSLPSSL---------SFLINLRTLSLHDCQHFGDL-SLIGELSLLEILD 137
            +       L  LP  L           L+NL++L L        L + I  L  L+ L 
Sbjct: 156 SI--RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLK 212

Query: 138 LSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMS 187
           +  S +S +  +   L  L  LDL  C  L   P         L+ L + 
Sbjct: 213 IRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPI-FGGRAPLKRLILK 261

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 75.8 bits (187), Expect = 4e-15
 Identities = 59/374 (15%), Positives = 110/374 (29%), Gaps = 90/374 (24%)

Query: 46  NDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLS 105
             +   H+ L   + Q  +    +             + ++    G    +L +    L 
Sbjct: 23  TALRPYHDVLS--QWQRHYNADRNRWHSAWRQ-ANSNNPQIETRTGR---ALKATADLLE 76

Query: 106 FL--INLRTLSLHDCQHFGDL-SLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLT 162
                    L L               LS L+ + +  + + E+P +  +   L  L L 
Sbjct: 77  DATQPGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLA 135

Query: 163 DCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHID 222
               L  +P   ++ L +L EL +                             LT L   
Sbjct: 136 RN-PLRALPAS-IASLNRLRELSIRAC------------------------PELTELPEP 169

Query: 223 IPEGEIMPSDMSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSRAMGLSQDMRISA 282
           +   +         NL S  +                                +   I +
Sbjct: 170 LASTDASGEHQGLVNLQSLRL--------------------------------EWTGIRS 197

Query: 283 LPSWIKNL--LLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLER 340
           LP+ I NL  L   + L + + + L  +   + H    +L  L + GC  ++        
Sbjct: 198 LPASIANLQNL---KSLKIRN-SPLSALGPAIHH--LPKLEELDLRGCTALRNYPPIFGG 251

Query: 341 TLRVTLLKLEWLMIVDNRNFVEICHGQLPA--GCLSNVKRLDVRDCGSVLKILPSHLVQS 398
                   L+ L++ D  N +      LP     L+ +++LD+R C + L  LPS + Q 
Sbjct: 252 -----RAPLKRLILKDCSNLLT-----LPLDIHRLTQLEKLDLRGCVN-LSRLPSLIAQ- 299

Query: 399 FQNLQRLRVEGCEL 412
                 + V     
Sbjct: 300 LPANCIILVPPHLQ 313

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 67.7 bits (166), Expect = 2e-12
 Identities = 30/150 (20%), Positives = 56/150 (37%), Gaps = 6/150 (4%)

Query: 26  LKDWPSINTFEDLTGISLMFNDIHEVHEGL-QCPRLQALFLQKNDLLDIPDPFFQGMKDL 84
                      +L  + L +  I  +   +     L++L ++ + L  +       +  L
Sbjct: 173 TDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHH-LPKL 231

Query: 85  KVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDL-SLIGELSLLEILDLSE-SD 142
           + LDL   G  +L + P        L+ L L DC +   L   I  L+ LE LDL    +
Sbjct: 232 EELDL--RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN 289

Query: 143 VSEIPVSFGRLGHLRLLDLTDCYNLELIPR 172
           +S +P    +L    ++ +      +L   
Sbjct: 290 LSRLPSLIAQLPANCIILVPPHLQAQLDQH 319

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 76.8 bits (190), Expect = 2e-15
 Identities = 41/198 (20%), Positives = 74/198 (37%), Gaps = 23/198 (11%)

Query: 25  ELKDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDL 84
           ++     I    +L  ++L  N I ++       +L  L++  N + DI     Q + +L
Sbjct: 55  KVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS--ALQNLTNL 112

Query: 85  KVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVS 144
           + L L    +  +    S L+ L  + +L+L    +  DLS +  ++ L  L ++ES V 
Sbjct: 113 RELYLNEDNISDI----SPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVK 168

Query: 145 EIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSN 204
           ++      L  L  L L     +E I    L+ L  L                       
Sbjct: 169 DVT-PIANLTDLYSLSLNYN-QIEDIS--PLASLTSLHYFTAYVN-------------QI 211

Query: 205 AKFIELGALSRLTSLHID 222
                +  ++RL SL I 
Sbjct: 212 TDITPVANMTRLNSLKIG 229

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 74.9 bits (185), Expect = 9e-15
 Identities = 36/198 (18%), Positives = 71/198 (35%), Gaps = 23/198 (11%)

Query: 25  ELKDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDL 84
            + D  +    E +T + +    +  +        L+ L L  N + DI       +  L
Sbjct: 33  SVTDVVTQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKL 90

Query: 85  KVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVS 144
             L +G     +  +  S+L  L NLR L L++     D+S +  L+ +  L+L  +   
Sbjct: 91  TNLYIGT----NKITDISALQNLTNLRELYLNEDN-ISDISPLANLTKMYSLNLGANHNL 145

Query: 145 EIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSN 204
                   +  L  L +T+   ++ +    ++ L  L  L ++      Q E+       
Sbjct: 146 SDLSPLSNMTGLNYLTVTES-KVKDVT--PIANLTDLYSLSLNYN----QIED------- 191

Query: 205 AKFIELGALSRLTSLHID 222
                L +L+ L      
Sbjct: 192 --ISPLASLTSLHYFTAY 207

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 74.5 bits (184), Expect = 1e-14
 Identities = 40/163 (24%), Positives = 68/163 (41%), Gaps = 9/163 (5%)

Query: 25  ELKDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDL 84
           ++KD   I    DL  +SL +N I ++        L       N + DI       M  L
Sbjct: 166 KVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--VANMTRL 223

Query: 85  KVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVS 144
             L +G + +  L    S L+ L  L  L +   Q   D++ + +L+ L++L++  + +S
Sbjct: 224 NSLKIGNNKITDL----SPLANLSQLTWLEIGTNQ-ISDINAVKDLTKLKMLNVGSNQIS 278

Query: 145 EIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMS 187
           +I      L  L  L L +   L      V+  L  L  L++S
Sbjct: 279 DIS-VLNNLSQLNSLFLNNN-QLGNEDMEVIGGLTNLTTLFLS 319

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 74.1 bits (183), Expect = 2e-14
 Identities = 36/200 (18%), Positives = 74/200 (37%), Gaps = 27/200 (13%)

Query: 25  ELKDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDL 84
            +          +     L    + +V    +   +  L +    +  I     + + +L
Sbjct: 11  PINQIFPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQG--IEYLTNL 68

Query: 85  KVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVS 144
           + L+L G+ +  +    S LS L+ L  L +   +   D+S +  L+ L  L L+E ++S
Sbjct: 69  EYLNLNGNQITDI----SPLSNLVKLTNLYIGTNK-ITDISALQNLTNLRELYLNEDNIS 123

Query: 145 EIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSN 204
           +I      L  +  L+L   +NL  +    LS +  L  L ++                +
Sbjct: 124 DIS-PLANLTKMYSLNLGANHNLSDLS--PLSNMTGLNYLTVT---------------ES 165

Query: 205 --AKFIELGALSRLTSLHID 222
                  +  L+ L SL ++
Sbjct: 166 KVKDVTPIANLTDLYSLSLN 185

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 73.3 bits (181), Expect = 3e-14
 Identities = 37/182 (20%), Positives = 73/182 (40%), Gaps = 26/182 (14%)

Query: 38  LTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSL 97
              ++ +   I+++             LQK  + D+     + ++ +  L + G  V S+
Sbjct: 2   AATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVASI 59

Query: 98  FSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLR 157
                 + +L NL  L+L+  Q   D+S +  L  L  L +  + +++I  +   L +LR
Sbjct: 60  ----QGIEYLTNLEYLNLNGNQ-ITDISPLSNLVKLTNLYIGTNKITDIS-ALQNLTNLR 113

Query: 158 LLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLT 217
            L L +    ++ P   L+ L K+  L +                +N    +L  LS +T
Sbjct: 114 ELYLNEDNISDISP---LANLTKMYSLNLG---------------ANHNLSDLSPLSNMT 155

Query: 218 SL 219
            L
Sbjct: 156 GL 157

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 49.5 bits (119), Expect = 2e-06
 Identities = 23/115 (20%), Positives = 45/115 (39%), Gaps = 5/115 (4%)

Query: 25  ELKDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDL 84
           ++ D   +     LT + +  N I +++      +L+ L +  N + DI       +  L
Sbjct: 232 KITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDISV--LNNLSQL 289

Query: 85  KVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLS 139
             L L  + + +       +  L NL TL L       D+  +  LS ++  D +
Sbjct: 290 NSLFLNNNQLGNE--DMEVIGGLTNLTTLFLSQNH-ITDIRPLASLSKMDSADFA 341

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 41.0 bits (97), Expect = 7e-04
 Identities = 16/94 (17%), Positives = 36/94 (38%), Gaps = 4/94 (4%)

Query: 26  LKDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLK 85
           + D  ++     L  +++  N I ++       +L +LFL  N L +       G+ +L 
Sbjct: 255 ISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT 314

Query: 86  VLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQ 119
            L L  + +  +      L+ L  + +    +  
Sbjct: 315 TLFLSQNHITDI----RPLASLSKMDSADFANQV 344

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 76.2 bits (188), Expect = 5e-15
 Identities = 40/168 (23%), Positives = 68/168 (40%), Gaps = 24/168 (14%)

Query: 38  LTGISLMFNDIHEVHEGL--QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGG---- 91
           LT + L  ND+  +  G+    P+L  L +  N+L  I D  FQ    L+ L L      
Sbjct: 119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 178

Query: 92  ---SGVF-SLFSL------PSSLSFLINLRTLSLHDCQHFGDLSLIGELSL--LEILDLS 139
                +  SLF         S+L+  I +  L          ++++       L IL L 
Sbjct: 179 HVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNS----INVVRGPVNVELTILKLQ 234

Query: 140 ESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMS 187
            +++++          L  +DL+    LE I      ++++LE LY+S
Sbjct: 235 HNNLTDTA-WLLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYIS 280

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 73.5 bits (181), Expect = 4e-14
 Identities = 30/197 (15%), Positives = 72/197 (36%), Gaps = 24/197 (12%)

Query: 30  PSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDL 89
                F D+  I +   D++   E +     + +  + + +  +P       + +++L+L
Sbjct: 18  QYDCVFYDVH-IDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNL 76

Query: 90  GGSGVFSLFSLPS-SLSFLINLRTLSLHDCQ-HFGDLSLIGELSLLEILDLSESDVSEIP 147
                  +  + + + ++   ++ L +      +    +   + LL +L L  +D+S +P
Sbjct: 77  NDL---QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP 133

Query: 148 VS-FGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNA- 205
              F     L  L +++  NLE I          L+ L +S               SN  
Sbjct: 134 RGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLS---------------SNRL 177

Query: 206 KFIELGALSRLTSLHID 222
             ++L  +  L   ++ 
Sbjct: 178 THVDLSLIPSLFHANVS 194

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 66.6 bits (163), Expect = 6e-12
 Identities = 32/152 (21%), Positives = 55/152 (36%), Gaps = 17/152 (11%)

Query: 33  NTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGS 92
               +LT + L  N++ +    L  P L  + L  N+L  I    F  M+ L+ L +  +
Sbjct: 223 PVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 282

Query: 93  GVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLI----GELSLLEILDLSESDVSEIPV 148
               L +L      +  L+ L L        L  +     +   LE L L  + +  +  
Sbjct: 283 ---RLVALNLYGQPIPTLKVLDLSHNH----LLHVERNQPQFDRLENLYLDHNSIVTLK- 334

Query: 149 SFGRLGHLRLLDLTD----CYNLELIPRGVLS 176
                  L+ L L+     C +L  + R V  
Sbjct: 335 -LSTHHTLKNLTLSHNDWDCNSLRALFRNVAR 365

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 76.2 bits (188), Expect = 1e-14
 Identities = 34/160 (21%), Positives = 54/160 (33%), Gaps = 8/160 (5%)

Query: 33  NTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDL--LDIPDPFFQGMKDLKVLDLG 90
              + L  ++   N        +  P L+ L L +N L           G   LK LDL 
Sbjct: 322 LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381

Query: 91  GSGVFSLFSLPSSLSFLINLRTLSLHDCQ--HFGDLSLIGELSLLEILDLSESDVSEI-P 147
            +    + ++ S+   L  L  L           + S+   L  L  LD+S +       
Sbjct: 382 FN---GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 438

Query: 148 VSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMS 187
             F  L  L +L +      E     + + LR L  L +S
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 74.3 bits (183), Expect = 5e-14
 Identities = 75/396 (18%), Positives = 138/396 (34%), Gaps = 45/396 (11%)

Query: 35  FEDLTGISLMFNDIHEVHEG--LQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGS 92
                 + L FN +  +        P LQ L L + ++  I D  +Q +  L  L L G+
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 93  GVFSLFSL-PSSLSFLINLRTLSLHDCQHFG-DLSLIGELSLLEILDLSESDVS--EIPV 148
               + SL   + S L +L+ L   +      +   IG L  L+ L+++ + +   ++P 
Sbjct: 87  ---PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 149 SFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFI 208
            F  L +L  LDL+    ++ I    L  L ++  L +S           D S +   FI
Sbjct: 144 YFSNLTNLEHLDLSS-NKIQSIYCTDLRVLHQMPLLNLS----------LDLSLNPMNFI 192

Query: 209 ELGALS--RLTSLHIDIPEGEIMPSDMSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKK 266
           + GA    RL  L +      +       Q L    +      E      +E F +   +
Sbjct: 193 QPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE 252

Query: 267 RCSRAMGLSQDMR--------ISALPSWIKNL----LLRSEILALGDVNDLENIVS-DLA 313
                      +         I  L + + N+    L+   I  + D +        +L 
Sbjct: 253 GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELV 312

Query: 314 HDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLLK-LEWLMIVDNR-NFVEICHGQLPAG 371
           +  F +   L +     + +  N          L  LE+L +  N  +F   C       
Sbjct: 313 NCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSD--F 370

Query: 372 CLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRV 407
             +++K LD+        +    +  +F  L++L  
Sbjct: 371 GTTSLKYLDLSFN----GV--ITMSSNFLGLEQLEH 400

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 72.4 bits (178), Expect = 2e-13
 Identities = 38/160 (23%), Positives = 54/160 (33%), Gaps = 10/160 (6%)

Query: 31  SINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLG 90
             N   +++  SL+   I  V +       Q L L        P    + +K L      
Sbjct: 277 LFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNK 336

Query: 91  GSGVFSLFSLPSSLSFLINLRTLSLHDCQH--FGDLS-LIGELSLLEILDLSESDVSEIP 147
           G   FS   LP       +L  L L        G  S      + L+ LDLS + V  + 
Sbjct: 337 GGNAFSEVDLP-------SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS 389

Query: 148 VSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMS 187
            +F  L  L  LD       ++    V   LR L  L +S
Sbjct: 390 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 41.6 bits (98), Expect = 7e-04
 Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 7/77 (9%)

Query: 38  LTGISLMFNDIHEVHEGL--QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGG---S 92
           LT + L    + ++          LQ L +  N+   +    ++ +  L+VLD       
Sbjct: 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 531

Query: 93  GVF--SLFSLPSSLSFL 107
                 L   PSSL+FL
Sbjct: 532 TSKKQELQHFPSSLAFL 548

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 75.9 bits (186), Expect = 1e-14
 Identities = 50/164 (30%), Positives = 74/164 (45%), Gaps = 13/164 (7%)

Query: 25  ELKDWPSINTFEDLTGISLMFNDIHEVHEGLQ-CPRLQALFLQKNDLLDIPDPFFQGMKD 83
            + D  + N    +  I    +DI  V +G+Q  P +  LFL  N L DI       +K+
Sbjct: 32  SVTDAVTQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKN 88

Query: 84  LKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDV 143
           L  L L  + +  L    SSL  L  L++LSL       D++ +  L  LE L L  + +
Sbjct: 89  LGWLFLDENKIKDL----SSLKDLKKLKSLSLEHNG-ISDINGLVHLPQLESLYLGNNKI 143

Query: 144 SEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMS 187
           ++I     RL  L  L L D   +  I    L+ L KL+ LY+S
Sbjct: 144 TDIT-VLSRLTKLDTLSLEDN-QISDIV--PLAGLTKLQNLYLS 183

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 75.5 bits (185), Expect = 2e-14
 Identities = 43/215 (20%), Positives = 90/215 (41%), Gaps = 19/215 (8%)

Query: 25  ELKDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDL 84
           ++K    I    ++T + L  N + ++        L  LFL +N + D+     + +K L
Sbjct: 54  DIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDL--SSLKDLKKL 111

Query: 85  KVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVS 144
           K L L  +G+  +    + L  L  L +L L + +   D++++  L+ L+ L L ++ +S
Sbjct: 112 KSLSLEHNGISDI----NGLVHLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDNQIS 166

Query: 145 EIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSN 204
           +I      L  L+ L L+  +  +L     L+ L+ L+ L +           E  ++  
Sbjct: 167 DIV-PLAGLTKLQNLYLSKNHISDLRA---LAGLKNLDVLELF--------SQECLNKPI 214

Query: 205 AKFIELGALSRLTSLHIDIPEGEIMPSDMSFQNLT 239
                L   + + +    +   EI+  D  ++   
Sbjct: 215 NHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPN 249

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 67.1 bits (163), Expect = 8e-12
 Identities = 33/185 (17%), Positives = 66/185 (35%), Gaps = 24/185 (12%)

Query: 38  LTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSL 97
           +     +   I ++             L+K  + D        +  +  +    S + S+
Sbjct: 1   MGETITVSTPIKQIFPDDAFAETIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV 58

Query: 98  FSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLR 157
                 + +L N+  L L+  +   D+  +  L  L  L L E+ + ++  S   L  L+
Sbjct: 59  ----QGIQYLPNVTKLFLNGNKL-TDIKPLTNLKNLGWLFLDENKIKDLS-SLKDLKKLK 112

Query: 158 LLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLT 217
            L L     +  I    L  L +LE LY+          N+    +      L  L++L 
Sbjct: 113 SLSLEHN-GISDIN--GLVHLPQLESLYLGN--------NKITDITV-----LSRLTKLD 156

Query: 218 SLHID 222
           +L ++
Sbjct: 157 TLSLE 161

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 75.5 bits (186), Expect = 2e-14
 Identities = 35/167 (20%), Positives = 59/167 (35%), Gaps = 6/167 (3%)

Query: 23  GVELKDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMK 82
           GV +K    +        +S++   + +    L  P L++L L  N            + 
Sbjct: 294 GVSIKYLEDVPKHFKWQSLSIIRCQLKQF-PTLDLPFLKSLTLTMNKGSISFK--KVALP 350

Query: 83  DLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESD 142
            L  LDL  + +        S     +LR L L         +    L  L+ LD   S 
Sbjct: 351 SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHST 410

Query: 143 VSEIP--VSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMS 187
           +  +    +F  L  L  LD++   N ++   G+   L  L  L M+
Sbjct: 411 LKRVTEFSAFLSLEKLLYLDISYT-NTKIDFDGIFLGLTSLNTLKMA 456

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 73.9 bits (182), Expect = 6e-14
 Identities = 37/169 (21%), Positives = 61/169 (36%), Gaps = 10/169 (5%)

Query: 26  LKDWPSINTFEDLTGISLMFNDIHEVHEG----LQCPRLQALFLQKNDLLDIPDPFFQGM 81
                       L+ + L  N +          L    L+ L L  N  + +    F G+
Sbjct: 340 GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGL 398

Query: 82  KDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQ-HFGDLSLIGELSLLEILDLSE 140
           ++L+ LD   S +  +    S+   L  L  L +           +   L+ L  L ++ 
Sbjct: 399 EELQHLDFQHSTLKRVTE-FSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAG 457

Query: 141 SDVSEI--PVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMS 187
           +   +      F    +L  LDL+ C  LE I  GV   L +L+ L MS
Sbjct: 458 NSFKDNTLSNVFANTTNLTFLDLSKC-QLEQISWGVFDTLHRLQLLNMS 505

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 72.0 bits (177), Expect = 2e-13
 Identities = 38/159 (23%), Positives = 67/159 (42%), Gaps = 10/159 (6%)

Query: 35  FEDLTGISLMFNDIHEVHEG--LQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGS 92
                 I L FN +  +          LQ L L + ++  I D  + G+  L  L L G+
Sbjct: 31  PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90

Query: 93  GVFSLFSLPSSLSFLINLRTLSLHDCQHFGDL--SLIGELSLLEILDLSESDVSEIPV-- 148
            + S    P S S L +L  L   + +    L    IG+L  L+ L+++ + +    +  
Sbjct: 91  PIQSF--SPGSFSGLTSLENLVAVETK-LASLESFPIGQLITLKKLNVAHNFIHSCKLPA 147

Query: 149 SFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMS 187
            F  L +L  +DL+    ++ I    L  LR+  ++ +S
Sbjct: 148 YFSNLTNLVHVDLSY-NYIQTITVNDLQFLRENPQVNLS 185

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 60.0 bits (146), Expect = 1e-09
 Identities = 34/208 (16%), Positives = 64/208 (30%), Gaps = 21/208 (10%)

Query: 37  DLTGISLMFNDIHEVHEGLQCPRLQAL----FLQKNDLLDIPDPFFQGMKDLKVLDLGGS 92
            L G     N +    + L    +  L    F  + +L        +G+ D+ + +   +
Sbjct: 210 TLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269

Query: 93  GVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGR 152
                         L N+  +SL        L  + +    + L +    + + P     
Sbjct: 270 YTNDFSDDIVKFHCLANVSAMSLAGVS-IKYLEDVPKHFKWQSLSIIRCQLKQFP--TLD 326

Query: 153 LGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGA 212
           L  L+ L LT      +  +     L  L  L +S+        N         + +LG 
Sbjct: 327 LPFLKSLTLTMN-KGSISFK--KVALPSLSYLDLSR--------NALSFSGCCSYSDLG- 374

Query: 213 LSRLTSLHIDIPEGEIMPSDMSFQNLTS 240
            + L  L +      IM +  +F  L  
Sbjct: 375 TNSLRHLDLSFNGAIIMSA--NFMGLEE 400

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 4/82 (4%)

Query: 38  LTGISLMFNDIHEVHEGL--QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVF 95
           LT + L    + ++  G+     RLQ L +  N+LL +    +  +  L  LD   + + 
Sbjct: 475 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534

Query: 96  SLFSLPSSLSFLINLRTLSLHD 117
           +         F  +L   +L +
Sbjct: 535 TSK--GILQHFPKSLAFFNLTN 554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 74.2 bits (183), Expect = 3e-14
 Identities = 47/237 (19%), Positives = 85/237 (35%), Gaps = 34/237 (14%)

Query: 26  LKDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLK 85
           + D   +    +L  +    N I ++        L  L L  N L DI       + +L 
Sbjct: 189 VSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI--GTLASLTNLT 246

Query: 86  VLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVSE 145
            LDL  + + +L    + LS L  L  L L   Q   ++S +  L+ L  L+L+E+ + +
Sbjct: 247 DLDLANNQISNL----APLSGLTKLTELKLGANQ-ISNISPLAGLTALTNLELNENQLED 301

Query: 146 IPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNA 205
           I      L +L  L L      ++ P   +S L KL+ L+        +  +        
Sbjct: 302 IS-PISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNN----KVSD-------- 345

Query: 206 KFIELGALSRLTSLHI------DIPEGEIMPS----DMSFQNLTSFSITIGGPEEVP 252
               L  L+ +  L        D+     +       ++ Q  T+  +       +P
Sbjct: 346 -VSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIP 401

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 69.6 bits (171), Expect = 9e-13
 Identities = 37/165 (22%), Positives = 69/165 (41%), Gaps = 14/165 (8%)

Query: 25  ELKDWPSINTFEDLTGISLMFNDIHEVHEGLQ-CPRLQALFLQKNDLLDIPDPFFQGMKD 83
            + D  S    + +T +      I  + +G++    L  +    N L DI     + +  
Sbjct: 35  NVTDTVSQTDLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDI--TPLKNLTK 91

Query: 84  LKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDV 143
           L  + +  + +  +    + L+ L NL  L+L + Q   D+  +  L+ L  L+LS + +
Sbjct: 92  LVDILMNNNQIADI----TPLANLTNLTGLTLFNNQ-ITDIDPLKNLTNLNRLELSSNTI 146

Query: 144 SEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSK 188
           S+I  +   L  L+ L        +L P   L+ L  LE L +S 
Sbjct: 147 SDIS-ALSGLTSLQQLSF-GNQVTDLKP---LANLTTLERLDISS 186

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 66.5 bits (163), Expect = 1e-11
 Identities = 41/198 (20%), Positives = 71/198 (35%), Gaps = 25/198 (12%)

Query: 25  ELKDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDL 84
            +K    +    +LT I+   N + ++       +L  + +  N + DI       + +L
Sbjct: 57  GIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNL 114

Query: 85  KVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVS 144
             L L  + +  +      L  L NL  L L       D+S +  L+ L+ L        
Sbjct: 115 TGLTLFNNQITDI----DPLKNLTNLNRLELSSNT-ISDISALSGLTSLQQLSFGNQVTD 169

Query: 145 EIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSN 204
             P     L  L  LD++    +  I   VL++L  LE L  +      Q  +       
Sbjct: 170 LKP--LANLTTLERLDISSN-KVSDIS--VLAKLTNLESLIATNN----QISD------- 213

Query: 205 AKFIELGALSRLTSLHID 222
                LG L+ L  L ++
Sbjct: 214 --ITPLGILTNLDELSLN 229

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 66.1 bits (162), Expect = 1e-11
 Identities = 31/161 (19%), Positives = 61/161 (37%), Gaps = 9/161 (5%)

Query: 25  ELKDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDL 84
           ++ +   ++    LT + L  N I  +        L  L L +N L DI       +K+L
Sbjct: 254 QISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNL 311

Query: 85  KVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVS 144
             L L  + +  +    S +S L  L+ L  ++ +   D+S +  L+ +  L    + +S
Sbjct: 312 TYLTLYFNNISDI----SPVSSLTKLQRLFFYNNK-VSDVSSLANLTNINWLSAGHNQIS 366

Query: 145 EIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELY 185
           ++      L  +  L L D       P    + +     + 
Sbjct: 367 DLT-PLANLTRITQLGLNDQ-AWTNAPVNYKANVSIPNTVK 405

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 65.8 bits (161), Expect = 2e-11
 Identities = 29/196 (14%), Positives = 67/196 (34%), Gaps = 25/196 (12%)

Query: 26  LKDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLK 85
           +    +     +     L   ++ +        ++  L   +  +  I     + + +L 
Sbjct: 14  INQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSI--DGVEYLNNLT 71

Query: 86  VLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVSE 145
            ++   + +  +    + L  L  L  + +++ Q   D++ +  L+ L  L L  + +++
Sbjct: 72  QINFSNNQLTDI----TPLKNLTKLVDILMNNNQ-IADITPLANLTNLTGLTLFNNQITD 126

Query: 146 IPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNA 205
           I      L +L  L+L+    +  I    LS L  L++L                     
Sbjct: 127 ID-PLKNLTNLNRLELSSN-TISDIS--ALSGLTSLQQLSF--------------GNQVT 168

Query: 206 KFIELGALSRLTSLHI 221
               L  L+ L  L I
Sbjct: 169 DLKPLANLTTLERLDI 184

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 64.2 bits (157), Expect = 5e-11
 Identities = 33/163 (20%), Positives = 64/163 (39%), Gaps = 9/163 (5%)

Query: 25  ELKDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDL 84
           ++ +   +     LT + L  N + ++        L  L L  N++ DI       +  L
Sbjct: 276 QISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKL 333

Query: 85  KVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVS 144
           + L    + V    S  SSL+ L N+  LS    Q   DL+ +  L+ +  L L++   +
Sbjct: 334 QRLFFYNNKV----SDVSSLANLTNINWLSAGHNQ-ISDLTPLANLTRITQLGLNDQAWT 388

Query: 145 EIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMS 187
             PV++    ++ + +        LI    +S      E  ++
Sbjct: 389 NAPVNY--KANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 429

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 55.4 bits (134), Expect = 3e-08
 Identities = 29/142 (20%), Positives = 56/142 (39%), Gaps = 8/142 (5%)

Query: 26  LKDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLK 85
           L+D   I+  ++LT ++L FN+I ++       +LQ LF   N + D+       + ++ 
Sbjct: 299 LEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSS--LANLTNIN 356

Query: 86  VLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVSE 145
            L  G + +  L    + L+ L  +  L L+D               +     + +    
Sbjct: 357 WLSAGHNQISDL----TPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI 412

Query: 146 IPVSFGRLGHLRLLDLTDCYNL 167
            P +    G     D+T  +NL
Sbjct: 413 APATISDGGSYTEPDIT--WNL 432

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 74.2 bits (183), Expect = 6e-14
 Identities = 35/168 (20%), Positives = 69/168 (41%), Gaps = 16/168 (9%)

Query: 28  DWPSINTFEDLTGISLMFNDIH---EVHEGLQCPRLQALFLQKNDLL-DIPDPF--FQGM 81
              S+ +   L  +++  N +    +V  GL+   L+ L L  N +       +    G 
Sbjct: 118 TLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGC 177

Query: 82  KDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSES 141
            +LK L + G+      S    +S  +NL  L +        +  +G+ S L+ LD+S +
Sbjct: 178 GELKHLAISGNK----ISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGN 233

Query: 142 DVS-EIPVSFGRLGHLRLLDLTDCYNLE-LIPRGVLSRLRKLEELYMS 187
            +S +   +      L+LL+++        IP      L+ L+ L ++
Sbjct: 234 KLSGDFSRAISTCTELKLLNISSN-QFVGPIPP---LPLKSLQYLSLA 277

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 67.2 bits (165), Expect = 1e-11
 Identities = 37/158 (23%), Positives = 64/158 (40%), Gaps = 12/158 (7%)

Query: 37  DLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFS 96
           DL+   L           L    L++LFL  + +       F+    L  LDL  + +  
Sbjct: 56  DLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHING-SVSGFKCSASLTSLDLSRNSLSG 114

Query: 97  LFSLPSSLSFLINLRTLSLHDCQ--HFGDLSLIGELSLLEILDLSESDVS-EIPVSF--- 150
             +  +SL     L+ L++        G +S   +L+ LE+LDLS + +S    V +   
Sbjct: 115 PVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLS 174

Query: 151 GRLGHLRLLDLTDCYNLE-LIPRGVLSRLRKLEELYMS 187
              G L+ L ++    +   +    +SR   LE L +S
Sbjct: 175 DGCGELKHLAISGN-KISGDVD---VSRCVNLEFLDVS 208

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 66.1 bits (162), Expect = 2e-11
 Identities = 30/142 (21%), Positives = 50/142 (35%), Gaps = 12/142 (8%)

Query: 84  LKVLDLGGSGVFSLF-SLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESD 142
           +  +DL    +   F ++ SSL  L  L +L L +    G +S     + L  LDLS + 
Sbjct: 52  VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNS 111

Query: 143 VS-EIP--VSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENED 199
           +S  +    S G    L+ L+++              +L  LE L +S            
Sbjct: 112 LSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVG- 170

Query: 200 DSRSNAKFIELGALSRLTSLHI 221
                  ++       L  L I
Sbjct: 171 -------WVLSDGCGELKHLAI 185

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 64.5 bits (158), Expect = 6e-11
 Identities = 47/234 (20%), Positives = 80/234 (34%), Gaps = 30/234 (12%)

Query: 33  NTFEDLTGISLMFNDIH-EVHEGL-QCPRLQALFLQKNDLL-DIPDPFFQGMKDLKVLDL 89
           N    L  + L  N    ++   L  C  L +L L  N L   IP      +  L+ L L
Sbjct: 391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP-SSLGSLSKLRDLKL 449

Query: 90  GG---SGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDL-SLIGELSLLEILDLSESDVS- 144
                 G      +P  L ++  L TL L      G++ S +   + L  + LS + ++ 
Sbjct: 450 WLNMLEG-----EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG 504

Query: 145 EIPVSFGRLGHLRLLDLTDCYNLE-LIPRGVLSRLRKLEELYMS---------KTFCHWQ 194
           EIP   GRL +L +L L++  +    IP   L   R L  L ++                
Sbjct: 505 EIPKWIGRLENLAILKLSNN-SFSGNIPAE-LGDCRSLIWLDLNTNLFNGTIPAAMFKQS 562

Query: 195 FENEDDSRSNAKFIELGALSRLTSLHIDIP----EGEIMPSDMSFQNLTSFSIT 244
            +   +  +  +++ +         H        +G               +IT
Sbjct: 563 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNIT 616

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 62.6 bits (153), Expect = 2e-10
 Identities = 45/168 (26%), Positives = 71/168 (42%), Gaps = 16/168 (9%)

Query: 30  PSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLL-DIPDPFFQGMKDLKVLD 88
            +I+T  +L  +++  N        L    LQ L L +N    +IPD        L  LD
Sbjct: 241 RAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLD 300

Query: 89  LGG---SGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDL--SLIGELSLLEILDLSESDV 143
           L G    G     ++P        L +L+L      G+L    + ++  L++LDLS ++ 
Sbjct: 301 LSGNHFYG-----AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355

Query: 144 S-EIPVSFGRL-GHLRLLDLTDCYNLE-LIPRGVL-SRLRKLEELYMS 187
           S E+P S   L   L  LDL+   N    I   +  +    L+ELY+ 
Sbjct: 356 SGELPESLTNLSASLLTLDLSSN-NFSGPILPNLCQNPKNTLQELYLQ 402

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 61.5 bits (150), Expect = 5e-10
 Identities = 54/181 (29%), Positives = 73/181 (40%), Gaps = 33/181 (18%)

Query: 38  LTGISLMFNDIH-EVHEGL-QCPRLQALFLQKNDLLD-IPDPFFQGMKDLKVLDLGG--- 91
           LTG+ L  N  +  V      C  L++L L  N+    +P      M+ LKVLDL     
Sbjct: 296 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355

Query: 92  SGVF--SLFSLPSSLSFLI--------------------NLRTLSLHDCQHFGDL-SLIG 128
           SG    SL +L +SL  L                      L+ L L +    G +   + 
Sbjct: 356 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 415

Query: 129 ELSLLEILDLSESDVS-EIPVSFGRLGHLRLLDLTDCYNLE-LIPRGVLSRLRKLEELYM 186
             S L  L LS + +S  IP S G L  LR L L     LE  IP+  L  ++ LE L +
Sbjct: 416 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN-MLEGEIPQE-LMYVKTLETLIL 473

Query: 187 S 187
            
Sbjct: 474 D 474

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.1 bits (110), Expect = 4e-05
 Identities = 25/159 (15%), Positives = 47/159 (29%), Gaps = 35/159 (22%)

Query: 57  CPRLQALFLQKNDLLD-IPDPFFQGMKDLKVLDLGG---SGVFSLFSLPSSLSFLINLRT 112
           C  L  + L  N L   IP  +   +++L +L L     SG     ++P+ L    +L  
Sbjct: 489 CTNLNWISLSNNRLTGEIP-KWIGRLENLAILKLSNNSFSG-----NIPAELGDCRSLIW 542

Query: 113 LSLHD-----------CQHFGDLSL----------IGELSLLEILDLSESDVS---EIPV 148
           L L+             +  G ++           I    + +    + + +        
Sbjct: 543 LDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSE 602

Query: 149 SFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMS 187
              RL      ++T                  +  L MS
Sbjct: 603 QLNRLSTRNPCNITSRVYGGHTSPT-FDNNGSMMFLDMS 640

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 74.1 bits (182), Expect = 7e-14
 Identities = 45/386 (11%), Positives = 120/386 (31%), Gaps = 59/386 (15%)

Query: 60  LQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQ 119
           LQ    +  ++  I       +KD ++ +L       +  +  ++  L  L+ +   +  
Sbjct: 404 LQDAINRNPEMKPIKKDSRISLKDTQIGNLTNR----ITFISKAIQRLTKLQIIYFANSP 459

Query: 120 HFGDLS-LIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRL 178
                +     +   +             +S+  L  L  ++L +C N+  +P   L  L
Sbjct: 460 ----FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP-DFLYDL 514

Query: 179 RKLEELYMSKTFCHWQFENEDDSRSNAKFI--ELGALSRLTSLHIDIPEGEIMPSDMSFQ 236
            +L+ L ++      +  +    +++   +  +     ++                M + 
Sbjct: 515 PELQSLNIA----CNRGISAAQLKADWTRLADDEDTGPKIQIF------------YMGYN 558

Query: 237 NLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEI 296
           NL  F      P    L   +++            +      ++  L ++  N+ L    
Sbjct: 559 NLEEF------PASASLQKMVKL----------GLLDCV-HNKVRHLEAFGTNVKLT--D 599

Query: 297 LALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLLKLEWLMIVD 356
           L L   N +E I  D      +++  L     N++KY+ N        ++  +  +    
Sbjct: 600 LKLDY-NQIEEIPEDFCA-FTDQVEGL-GFSHNKLKYIPNIFNAK---SVYVMGSVDFSY 653

Query: 357 NR--NFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLV 414
           N+  +        +      N   + +      ++  P+ L  +   +  + +    +  
Sbjct: 654 NKIGSEGRNISCSMDDYKGINASTVTLSYNE--IQKFPTELFATGSPISTIILSNNLM-- 709

Query: 415 SVFEIERVNIAKEETELFSSLEKLTL 440
           +      +       +    L  + L
Sbjct: 710 TSIPENSLKPKDGNYKNTYLLTTIDL 735

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 74.1 bits (182), Expect = 7e-14
 Identities = 26/214 (12%), Positives = 66/214 (30%), Gaps = 30/214 (14%)

Query: 25  ELKDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDL 84
           E     S+     L  +  + N +  +       +L  L L  N + +IP+ F      +
Sbjct: 562 EFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQV 621

Query: 85  KVLDLGGSGVFSLFSLPSSLSF--LINLRTLSLHDCQ------HFGDLSLIGELSLLEIL 136
           + L    +    L  +P+  +   +  + ++     +      +        +      +
Sbjct: 622 EGLGFSHN---KLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTV 678

Query: 137 DLSESDVSEIPVS-FGRLGHLRLLDLTDCYNLELIPR-------GVLSRLRKLEELYMSK 188
            LS +++ + P   F     +  + L++   +  IP        G       L  + +  
Sbjct: 679 TLSYNEIQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRF 737

Query: 189 TFCHWQFENEDDSRSNAKFIELGALSRLTSLHID 222
                +  +  D            L  L+++ + 
Sbjct: 738 N----KLTSLSDD------FRATTLPYLSNMDVS 761

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 67.2 bits (164), Expect = 1e-11
 Identities = 25/170 (14%), Positives = 54/170 (31%), Gaps = 20/170 (11%)

Query: 30  PSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDL 89
            +I     L  I    +     +  +     +          +  +  +  +KDL  ++L
Sbjct: 442 KAIQRLTKLQIIYFANSPFTYDNIAVD---WEDANSDYAKQYENEELSWSNLKDLTDVEL 498

Query: 90  GGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSL----------IGELSLLEILDLS 139
                 +   LP  L  L  L++L++   +      L                ++I  + 
Sbjct: 499 YNCPNMT--QLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMG 556

Query: 140 ESDVSEIPVS--FGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMS 187
            +++ E P S    ++  L LLD      +  +         KL +L + 
Sbjct: 557 YNNLEEFPASASLQKMVKLGLLDCVHN-KVRHLE--AFGTNVKLTDLKLD 603

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 62.2 bits (151), Expect = 3e-10
 Identities = 27/205 (13%), Positives = 58/205 (28%), Gaps = 29/205 (14%)

Query: 56  QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSL 115
              R+  L L               + +LKVL  G         L        ++     
Sbjct: 321 NNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERK 380

Query: 116 HDCQHFGDLSLIGELSLLEILDLSESDVSEIP----VSFGRLGHLRLLDLTDCYN-LELI 170
           H  +       +     L + DL +  ++  P    +       L+   + +  N +  I
Sbjct: 381 HRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFI 440

Query: 171 PRGVLSRLRKLEELYMS--------KTFCHWQFENEDDSRSNAKFIELGALSRLTSLHI- 221
            +  + RL KL+ +Y +                 ++   +   + +    L  LT + + 
Sbjct: 441 SKA-IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELY 499

Query: 222 ------DIPEGEIMPSDMSFQNLTS 240
                  +P+           +L  
Sbjct: 500 NCPNMTQLPD--------FLYDLPE 516

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 61.0 bits (148), Expect = 8e-10
 Identities = 21/139 (15%), Positives = 45/139 (32%), Gaps = 13/139 (9%)

Query: 56  QCPRLQALFLQKNDLLDIPDPF-FQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLS 114
               L  + L+ N L  + D F    +  L  +D+  +      S P+       L+   
Sbjct: 726 NTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYN---CFSSFPTQPLNSSQLKAFG 782

Query: 115 LHDCQHFGDLSL-------IGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNL 167
           +   +      +       I     L  L +  +D+ ++         L +LD+ D  N+
Sbjct: 783 IRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL--TPQLYILDIADNPNI 840

Query: 168 ELIPRGVLSRLRKLEELYM 186
            +    V   +     + +
Sbjct: 841 SIDVTSVCPYIEAGMYVLL 859

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 73.0 bits (179), Expect = 1e-13
 Identities = 30/201 (14%), Positives = 72/201 (35%), Gaps = 32/201 (15%)

Query: 30  PSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDL 89
                F D+  I +   D++   E +     + +  + + +  +P       + +++L+L
Sbjct: 24  QYDCVFYDVH-IDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNL 82

Query: 90  GGSGVFSLFSLPS-SLSFLINLRTLSLHDCQHFGDLSLIGE-----LSLLEILDLSESDV 143
                  +  + + + ++   ++ L +        +  +       + LL +L L  +D+
Sbjct: 83  NDL---QIEEIDTYAFAYAHTIQKLYMGFNA----IRYLPPHVFQNVPLLTVLVLERNDL 135

Query: 144 SEIPVS-FGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSR 202
           S +P   F     L  L +++  NLE I          L+ L +S               
Sbjct: 136 SSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLS--------------- 179

Query: 203 SNA-KFIELGALSRLTSLHID 222
           SN    ++L  +  L   ++ 
Sbjct: 180 SNRLTHVDLSLIPSLFHANVS 200

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 64.9 bits (158), Expect = 3e-11
 Identities = 30/195 (15%), Positives = 67/195 (34%), Gaps = 31/195 (15%)

Query: 31  SINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLG 90
            ++    L   ++ +N +  +        ++ L    N +  +  P       L +L L 
Sbjct: 187 DLSLIPSLFHANVSYNLLSTLAIP---IAVEELDASHNSINVVRGPVNVE---LTILKLQ 240

Query: 91  GSGVFSLFSLPSSLSFLINLRTLSLHDCQ--HFGDLSLIGELSLLEILDLSESDVSEIPV 148
            +   +L      L     L  + L   +         +  +  LE L +S + +  + +
Sbjct: 241 HN---NLTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVK-MQRLERLYISNNRLVALNL 295

Query: 149 SFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNA-KF 207
               +  L++LDL+   +L  + R    +  +LE LY+                 N+   
Sbjct: 296 YGQPIPTLKVLDLSHN-HLLHVERN-QPQFDRLENLYLD---------------HNSIVT 338

Query: 208 IELGALSRLTSLHID 222
           ++L     L +L + 
Sbjct: 339 LKLSTHHTLKNLTLS 353

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 64.9 bits (158), Expect = 4e-11
 Identities = 31/148 (20%), Positives = 53/148 (35%), Gaps = 9/148 (6%)

Query: 33  NTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGS 92
               +LT + L  N++ +    L  P L  + L  N+L  I    F  M+ L+ L +  +
Sbjct: 229 PVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 288

Query: 93  GVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGR 152
               L +L      +  L+ L L             +   LE L L  + +  +      
Sbjct: 289 ---RLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LST 343

Query: 153 LGHLRLLDLTD----CYNLELIPRGVLS 176
              L+ L L+     C +L  + R V  
Sbjct: 344 HHTLKNLTLSHNDWDCNSLRALFRNVAR 371

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 73.3 bits (180), Expect = 1e-13
 Identities = 48/224 (21%), Positives = 88/224 (39%), Gaps = 20/224 (8%)

Query: 31  SINTFEDLTGISLMFNDIHEVH----EGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKV 86
           S+     + G    F++I +       GL    ++ L L    +  +    F+ +KDLKV
Sbjct: 235 SLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKV 294

Query: 87  LDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQ--HFGDLSLIGELSLLEILDLSESDVS 144
           L+L  + +  +     +   L NL+ L+L           +  G L  +  +DL ++ ++
Sbjct: 295 LNLAYNKINKIA--DEAFYGLDNLQVLNLSYNLLGELYSSNFYG-LPKVAYIDLQKNHIA 351

Query: 145 EIPV-SFGRLGHLRLLDLTDC-----YNLELIPRGVLS--RLRKLEELYMSKTFCHWQFE 196
            I   +F  L  L+ LDL D      + +  IP   LS  +L  L ++ ++    H   E
Sbjct: 352 IIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLS-E 410

Query: 197 NEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSDMSFQNLTS 240
           N  ++     F  L  +  L  L ++         D +     S
Sbjct: 411 NRLENLDILYF--LLRVPHLQILILNQNRFSSCSGDQTPSENPS 452

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 72.9 bits (179), Expect = 1e-13
 Identities = 69/387 (17%), Positives = 116/387 (29%), Gaps = 40/387 (10%)

Query: 43  LMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPS 102
             F ++ +V + L     + L L  N +  +    F  ++ L++L+LG      L     
Sbjct: 11  YRFCNLTQVPQVL--NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT-PLTIDKE 67

Query: 103 SLSFLINLRTLSLHDCQ-HFGDLSLIGELSLLEILDLSE---SDVSEIPVSFGRLGHLRL 158
           +   L NLR L L   + +F        L  L  L L     SD       F  L  L  
Sbjct: 68  AFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127

Query: 159 LDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFEN-EDDSRSNAKFIELGALSRLT 217
           LDL+      L       +L  L+ +  S      Q     +      +   L   S   
Sbjct: 128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN----QIFLVCEHELEPLQGKTLSFFSLAA 183

Query: 218 SLHIDIPEGEIMPSDMSFQNLTSFSITIGGP--EEVPLSDFIEVFSRKFKKRCSRAMGLS 275
           +        +       F+N+    + + G         +F    S+        A  + 
Sbjct: 184 NSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIM 243

Query: 276 ----QDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEM 331
                   I          L RS +  L           DL+H     L         ++
Sbjct: 244 GAGFGFHNIKDPDQNTFAGLARSSVRHL-----------DLSHGFVFSLNSRVFETLKDL 292

Query: 332 KYL------LNSLERTLRVTLLKLEWLMIVDNRNFVEICHGQLPAGCLSNVKRLDVRDCG 385
           K L      +N +       L  L+ L +  N    E+         L  V  +D++   
Sbjct: 293 KVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL-LGELYSSNF--YGLPKVAYIDLQKNH 349

Query: 386 SVLKILPSHLVQSFQNLQRLRVEGCEL 412
             + I+     +  + LQ L +    L
Sbjct: 350 --IAIIQDQTFKFLEKLQTLDLRDNAL 374

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 66.4 bits (162), Expect = 2e-11
 Identities = 37/181 (20%), Positives = 73/181 (40%), Gaps = 26/181 (14%)

Query: 33  NTFEDLTG---ISLMFNDIHEVHEGL--QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVL 87
             F  L     ++L +N + E++       P++  + LQKN +  I D  F+ ++ L+ L
Sbjct: 308 EAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTL 367

Query: 88  DLGGSGVFSLFSLPS---------------SLSFLINLRTLSLHDCQHFGDLSLIGELSL 132
           DL  + + ++  +PS                ++   NL  LS +  ++   L  +  +  
Sbjct: 368 DLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPH 427

Query: 133 LEILDLSESDVSEIP--VSFGRLGHLRLLDLTDCY----NLELIPRGVLSRLRKLEELYM 186
           L+IL L+++  S      +      L  L L +          +   V   L  L+ LY+
Sbjct: 428 LQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYL 487

Query: 187 S 187
           +
Sbjct: 488 N 488

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 66.4 bits (162), Expect = 2e-11
 Identities = 35/216 (16%), Positives = 60/216 (27%), Gaps = 14/216 (6%)

Query: 35  FEDLTGISLMFNDI-HEVHEGL--QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGG 91
            E L  + L        + +      P L+ L L  + +  +    FQG+  L  L L  
Sbjct: 47  LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYF 106

Query: 92  SGVFSLFSLPSSLSFLINLRTLSLHDCQ--HFGDLSLIGELSLLEILDLSESDVSEIPV- 148
            G+            L  L  L L   Q          G+L+ L+ +D S + +  +   
Sbjct: 107 CGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH 166

Query: 149 SFGRLG--HLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAK 206
               L    L    L        +       +     + +            D + + + 
Sbjct: 167 ELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSN 226

Query: 207 FIELGALSRLTSLHIDIPEGEIMPSDMSFQNLTSFS 242
            I       L   H       IM +   F N+    
Sbjct: 227 AISKSQAFSLILAH------HIMGAGFGFHNIKDPD 256

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 61.0 bits (148), Expect = 7e-10
 Identities = 36/166 (21%), Positives = 65/166 (39%), Gaps = 14/166 (8%)

Query: 31  SINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPD-PFFQGMKDLKVLDL 89
           +I+    +  I L  N +  + +         + L +N L ++    F   +  L++L L
Sbjct: 376 TIHFIPSIPDIFLSGNKLVTLPKI--NLTANLIHLSENRLENLDILYFLLRVPHLQILIL 433

Query: 90  GGSGVFSLFSLPSSLSFLINLRTLSLHDCQ------HFGDLSLIGELSLLEILDLSESDV 143
             +  FS  S   + S   +L  L L +              +   LS L++L L+ + +
Sbjct: 434 NQNR-FSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYL 492

Query: 144 SEIPV-SFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSK 188
           + +P   F  L  LR L L     L ++    L     LE L +S+
Sbjct: 493 NSLPPGVFSHLTALRGLSLNSN-RLTVLSHNDL--PANLEILDISR 535

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 56.0 bits (135), Expect = 3e-08
 Identities = 67/412 (16%), Positives = 117/412 (28%), Gaps = 93/412 (22%)

Query: 25  ELKDWPSINTFEDLTGISLMFNDIHEVHE----GLQCPRLQALFLQKNDLLDIPDPFFQG 80
            L   PS      L  I    N I  V E     LQ   L    L  N L       +  
Sbjct: 137 SLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGK 196

Query: 81  M------KDLKVLDLGGSGVFSL----------FSLPSSLSFLINLRTLSLHDCQ--HFG 122
                    L++LD+ G+G               S   SL    ++              
Sbjct: 197 CMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPD 256

Query: 123 DLSLIG-ELSLLEILDLSESDVSEI-PVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRK 180
             +  G   S +  LDLS   V  +    F  L  L++L+L     +  I       L  
Sbjct: 257 QNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN-KINKIADEAFYGLDN 315

Query: 181 LEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLT---SLHIDIPEGEIMPSDMSFQN 237
           L+ L +S         N      ++ F  L  ++ +    +    I +        +F+ 
Sbjct: 316 LQVLNLSY--------NLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQ-------TFKF 360

Query: 238 LTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSRAMGLSQDMRISALP--SWIKNLLLRSE 295
           L          + + L D                        ++ +     I ++ L   
Sbjct: 361 LEKL-------QTLDLRD----------------------NALTTIHFIPSIPDIFLSG- 390

Query: 296 ILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLLKLEWLMIV 355
                  N L  +           L    +   + + +LL          +  L+ L++ 
Sbjct: 391 -------NKLVTLPKINLTANLIHLSENRLENLDILYFLLR---------VPHLQILIL- 433

Query: 356 DNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRV 407
            N+N    C G        ++++L + +    L          F+ L  L+V
Sbjct: 434 -NQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQV 484

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 48.6 bits (116), Expect = 5e-06
 Identities = 58/363 (15%), Positives = 111/363 (30%), Gaps = 69/363 (19%)

Query: 130 LSLLEILDLSESDVSEIPV-SFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSK 188
           L+  E L LS + +  +   SF  L  L+LL+L   Y    I +     L  L  L +  
Sbjct: 23  LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL-- 80

Query: 189 TFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSDMSFQNLTSFSITIGGP 248
                         S   F+   A   L  L             + F  L+   +  G  
Sbjct: 81  ------------GSSKIYFLHPDAFQGLFHLFE---------LRLYFCGLSDAVLKDGYF 119

Query: 249 EEVP------LSD--FIEVFSRKFKKRCSRAMGLS-QDMRISALP----SWIKNLLLRSE 295
             +       LS      ++      + +    +     +I  +       ++   L   
Sbjct: 120 RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFF 179

Query: 296 ILALGDVNDLENIVSDLAHDGFNELMFLAI---------VGCNEMKYLLNSLERTLRVTL 346
            LA    N L + VS       N    + +            +      N++ ++   +L
Sbjct: 180 SLAA---NSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSL 236

Query: 347 LKLEWLMIVD--NRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQR 404
           +    +M       N  +           S+V+ LD+      +  L S + ++ ++L+ 
Sbjct: 237 ILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGF--VFSLNSRVFETLKDLKV 294

Query: 405 LRVEGCELLVSVFEIERVNIAKEETELFSSLEKLTLIGL--PRMTDIWKGDTQFVSLHDL 462
           L +                I K   E F  L+ L ++ L    + ++    + F  L  +
Sbjct: 295 LNLAYN------------KINKIADEAFYGLDNLQVLNLSYNLLGEL--YSSNFYGLPKV 340

Query: 463 KKI 465
             I
Sbjct: 341 AYI 343

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 70.4 bits (173), Expect = 1e-13
 Identities = 52/226 (23%), Positives = 85/226 (37%), Gaps = 43/226 (19%)

Query: 33  NTFEDLTGISLMFNDIHEVHEGL--QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLG 90
           N       + L FN +  +        P LQ L L + ++  I D  +Q +  L  L L 
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84

Query: 91  GSGVFSLFSLPSSL-SFLINLRTLSLHDCQHFGDLSLI-----GELSLLEILDLSESDVS 144
           G+    + SL     S L +L+ L   +      L+ +     G L  L+ L+++ + + 
Sbjct: 85  GN---PIQSLALGAFSGLSSLQKLVAVETN----LASLENFPIGHLKTLKELNVAHNLIQ 137

Query: 145 EIPVS--FGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSR 202
              +   F  L +L  LDL+    ++ I    L  L ++  L +S               
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSLNPM------- 189

Query: 203 SNAKFIELGALS--RLTSLHID------IPEGEIMPSDMSFQNLTS 240
               FI+ GA    RL  L +D      +P+G        F  LTS
Sbjct: 190 ---NFIQPGAFKEIRLKELALDTNQLKSVPDG-------IFDRLTS 225

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 65.0 bits (159), Expect = 1e-11
 Identities = 39/160 (24%), Positives = 72/160 (45%), Gaps = 15/160 (9%)

Query: 38  LTGISLMFNDIHEVHEGL--QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVF 95
           L+ + L  N I  +  G       LQ L   + +L  + +     +K LK L++  +   
Sbjct: 78  LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN--- 134

Query: 96  SLFSLPSSLSF--LINLRTLSLHDCQ----HFGDLSLIGELSLLEI-LDLSESDVSEIPV 148
            + S      F  L NL  L L   +    +  DL ++ ++ LL + LDLS + ++ I  
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194

Query: 149 -SFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMS 187
            +F  +  L+ L L     L+ +P G+  RL  L+++++ 
Sbjct: 195 GAFKEI-RLKELALDTN-QLKSVPDGIFDRLTSLQKIWLH 232

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 71.2 bits (175), Expect = 1e-13
 Identities = 40/228 (17%), Positives = 77/228 (33%), Gaps = 55/228 (24%)

Query: 33  NTFEDLTGISLMFNDIHEVHEG--LQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLG 90
           +   D   + L  N I E+ +G       L  L L  N +  I    F  +  L+ L L 
Sbjct: 49  DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108

Query: 91  GSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLI-----GELSLLEILDLSESDVSE 145
            +    L  LP  +     L+ L +H+ +    ++ +       L+ + +++L  + +  
Sbjct: 109 KN---QLKELPEKM--PKTLQELRVHENE----ITKVRKSVFNGLNQMIVVELGTNPLKS 159

Query: 146 IPVS---FGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSR 202
             +    F  +  L  + + D  N+  IP+G+      L EL++                
Sbjct: 160 SGIENGAFQGMKKLSYIRIADT-NITTIPQGLPP---SLTELHLD--------------- 200

Query: 203 SNA-KFIELGALSRLTSLHI---------DIPEGEIMPSDMSFQNLTS 240
            N    ++  +L  L +L            +  G       S  N   
Sbjct: 201 GNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG-------SLANTPH 241

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 71.2 bits (175), Expect = 2e-13
 Identities = 34/162 (20%), Positives = 70/162 (43%), Gaps = 14/162 (8%)

Query: 33  NTFEDLTG---ISLMFNDIHEVHEGLQCPR-LQALFLQKNDLLDIPDPFFQGMKDLKVLD 88
             F  L     + L  N + E+ E +  P+ LQ L + +N++  +    F G+  + V++
Sbjct: 94  GAFAPLVKLERLYLSKNQLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVE 151

Query: 89  LGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLI--GELSLLEILDLSESDVSEI 146
           LG + + S      +   +  L  + + D      ++ I  G    L  L L  + ++++
Sbjct: 152 LGTNPLKSSGIENGAFQGMKKLSYIRIADTN----ITTIPQGLPPSLTELHLDGNKITKV 207

Query: 147 PV-SFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMS 187
              S   L +L  L L+   ++  +  G L+    L EL+++
Sbjct: 208 DAASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLN 248

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 66.2 bits (162), Expect = 6e-12
 Identities = 34/185 (18%), Positives = 67/185 (36%), Gaps = 31/185 (16%)

Query: 33  NTFEDLTGISLMFNDIHEVHEGL--QCPRLQALFLQKNDLLD--IPDPFFQGMKDLKVLD 88
              + L  + +  N+I +V + +     ++  + L  N L    I +  FQGMK L  + 
Sbjct: 118 KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR 177

Query: 89  LGG-------SGVF-SLFSL-----------PSSLSFLINLRTLSLHDCQ--HFGDLSLI 127
           +          G+  SL  L            +SL  L NL  L L         + SL 
Sbjct: 178 IADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA 237

Query: 128 GELSLLEILDLSESDVSEIPVSFGRLGHLRLLDL-----TDCYNLELIPRGVLSRLRKLE 182
                L  L L+ + + ++P       +++++ L     +   + +  P G  ++     
Sbjct: 238 N-TPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYS 296

Query: 183 ELYMS 187
            + + 
Sbjct: 297 GVSLF 301

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 64.3 bits (157), Expect = 3e-11
 Identities = 23/141 (16%), Positives = 43/141 (30%), Gaps = 15/141 (10%)

Query: 33  NTFEDLTGISLMFNDIHEVHEGL--QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLG 90
                LT + L  N I +V          L  L L  N +  + +        L+ L L 
Sbjct: 189 GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN 248

Query: 91  GSGVFSLFSLPSSLSFLINLRTLSLHD-------CQHFGDLSLIGELSLLEILDLSESDV 143
            +    L  +P  L+    ++ + LH+          F       + +    + L  + V
Sbjct: 249 NN---KLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305

Query: 144 SEIPVS---FGRLGHLRLLDL 161
               +    F  +     + L
Sbjct: 306 QYWEIQPSTFRCVYVRAAVQL 326

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 71.3 bits (175), Expect = 1e-13
 Identities = 40/236 (16%), Positives = 74/236 (31%), Gaps = 34/236 (14%)

Query: 33  NTFEDLTGISLMFNDIHEVHEGL--QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLG 90
              E +  + L  N I  +      +C  LQAL L  N +  I +  F  +  L+ LDL 
Sbjct: 49  GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108

Query: 91  G-------SGVFS--------------LFSLPSSLSF--LINLRTLSLHDCQHFGDLS-- 125
                   S  F                 +L  +  F  L  L+ L + +   F  +   
Sbjct: 109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK 168

Query: 126 LIGELSLLEILDLSESDVSEIPV-SFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEEL 184
               L+ LE L++  SD+      S   + ++  L L       L+    +     +E L
Sbjct: 169 DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK-QHILLLEIFVDVTSSVECL 227

Query: 185 YMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSDMSFQNLTS 240
            +  T       +E  +      I+      +      + +   +        ++ 
Sbjct: 228 ELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKL-----LNQISG 278

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 65.9 bits (161), Expect = 9e-12
 Identities = 25/172 (14%), Positives = 63/172 (36%), Gaps = 16/172 (9%)

Query: 30  PSINTFEDLTGIS----LMFNDIHEVHEGL--QCPRLQALFLQKNDLLDIPDPFFQGMKD 83
              + F  LT +        +   ++          L+ L +  +DL        + +++
Sbjct: 140 GETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQN 199

Query: 84  LKVLDLGGSGVFSL----FSLPSSLSFLINLRTLSLHDCQH----FGDLSLIGELSLLEI 135
           +  L L       L      + SS+  L  LR   L          G+ + + +      
Sbjct: 200 VSHLILHMKQHILLLEIFVDVTSSVECL-ELRDTDLDTFHFSELSTGETNSLIKKFTFRN 258

Query: 136 LDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMS 187
           + +++  + ++     ++  L  L+ +    L+ +P G+  RL  L+++++ 
Sbjct: 259 VKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLH 309

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 63/373 (16%), Positives = 105/373 (28%), Gaps = 104/373 (27%)

Query: 53  EGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSS-LSFLINLR 111
             L C R          L  IP    +    +K LDL  +    +  + +S L   +NL+
Sbjct: 26  ASLSCDRNGICKGSSGSLNSIPSGLTE---AVKSLDLSNN---RITYISNSDLQRCVNLQ 79

Query: 112 TLSLHDCQHFGDLSLIGE-----LSLLEILDLSESDVSEIPVS-FGRLGHLRLLDLTDCY 165
            L L        ++ I E     L  LE LDLS + +S +  S F  L  L  L+L    
Sbjct: 80  ALVLTSNG----INTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP 135

Query: 166 NLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHI---- 221
              L    + S L KL+ L +        F            I+    + LT L      
Sbjct: 136 YKTLGETSLFSHLTKLQILRVG---NMDTF----------TKIQRKDFAGLTFLEELEID 182

Query: 222 -----DIPEGEIMPSDMSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSRAMGLSQ 276
                            S +++ +          + L                       
Sbjct: 183 ASDLQSYEPK-------SLKSIQNV-------SHLILHMK-------------------- 208

Query: 277 DMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLN 336
             +   L     ++    E L L D +      S+L+    N L+               
Sbjct: 209 --QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLI--------------- 251

Query: 337 SLERTLRVTLLKLEWLMIVDNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLV 396
                          + I D      +         +S +  L+       LK +P  + 
Sbjct: 252 --------KKFTFRNVKITDES----LFQVMKLLNQISGLLELEFSRNQ--LKSVPDGIF 297

Query: 397 QSFQNLQRLRVEG 409
               +LQ++ +  
Sbjct: 298 DRLTSLQKIWLHT 310

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 70.1 bits (172), Expect = 9e-13
 Identities = 19/182 (10%), Positives = 59/182 (32%), Gaps = 18/182 (9%)

Query: 14  SKNKFLIKAGVELKDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDI 73
             + F+ +   E  +  +    +      L ++             L  + +     L  
Sbjct: 214 GNSPFVAENICEAWENENSEYAQQYKTEDLKWD---------NLKDLTDVEVYNCPNLTK 264

Query: 74  PDPFFQGMKDLKVLDL------GGSGVFSLFSLPSSLSFLINLRTLSLHDCQ--HFGDLS 125
              F + + +++++++       G  +   +   +       ++ + +       F   +
Sbjct: 265 LPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVET 324

Query: 126 LIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELY 185
            + ++  L +L+   + +     +FG    L  L+L     +  IP        ++E L 
Sbjct: 325 SLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYN-QITEIPANFCGFTEQVENLS 383

Query: 186 MS 187
            +
Sbjct: 384 FA 385

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 67.4 bits (165), Expect = 7e-12
 Identities = 29/183 (15%), Positives = 59/183 (32%), Gaps = 25/183 (13%)

Query: 28  DWPSINTFEDLTGISLMFNDIHEVHEGL---------QCPRLQALFLQKNDLLDIPDPFF 78
           +     +   ++ I   +N+I  V             +   + ++ L  N +   P   F
Sbjct: 394 NIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELF 453

Query: 79  QGMKDLKVLDLGG---SGV--FSLFSLPSSLSFLINLRTLSLHDCQHFGDLS---LIGEL 130
                L  ++L G   + +   SL     +      L ++ L   +    LS       L
Sbjct: 454 STGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSDDFRATTL 512

Query: 131 SLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNL------ELIPRGVLSRLRKLEEL 184
             L  +DLS +  S+ P        L+   + +  +          P G ++    L +L
Sbjct: 513 PYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEG-ITLCPSLTQL 571

Query: 185 YMS 187
            + 
Sbjct: 572 QIG 574

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 65.4 bits (160), Expect = 3e-11
 Identities = 56/417 (13%), Positives = 128/417 (30%), Gaps = 60/417 (14%)

Query: 30  PSINTFEDLTGISLM-FNDIHEVHEGL-QCPRLQALFLQKNDLLDIPDPFFQG------- 80
              +  +DLT + +    ++ ++   L   P +Q + +  N  +                
Sbjct: 243 LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAP 302

Query: 81  -MKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLS 139
             + ++++ +G +     F + +SL  +  L  L     Q  G L   G    L  L+L+
Sbjct: 303 VGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLA 361

Query: 140 ESDVSEIPVS-FGRLGHLRLLDLTDCYNLELIPRGV-LSRLRKLEELYMSKTFCHWQFEN 197
            + ++EIP +  G    +  L       L+ IP       +  +  +  S    + +  +
Sbjct: 362 YNQITEIPANFCGFTEQVENLSFAHN-KLKYIPNIFDAKSVSVMSAIDFS----YNEIGS 416

Query: 198 EDDSRSNAKFIELGALSRLTSLHID------IPEGEI--MPS----DMSFQNLTSFSITI 245
            D    +           ++S+++        P+            ++    LT      
Sbjct: 417 VDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNS 476

Query: 246 GGPEEVPLSDFIEVFSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLRS-EILALGDVND 304
              E     +   +           ++ L    +++ L    +   L     + L   N 
Sbjct: 477 LKDENENFKNTYLL----------TSIDLR-FNKLTKLSDDFRATTLPYLVGIDLSY-NS 524

Query: 305 LENIVSDLAHDGFNELMFLAIVGCNEMKY--LLNSLERTLRVTLLKLEWLMIVDNRNFVE 362
                +   +   + L    I    + +    L      +      L  L I  N +  +
Sbjct: 525 FSKFPTQPLN--SSTLKGFGIRNQRDAQGNRTLREWPEGIT-LCPSLTQLQIGSN-DIRK 580

Query: 363 ICHGQLPAGCLSNVKRLDVRD---CGSVLKILPSHLVQSFQNLQRLR---VEGCELL 413
           +           N+  LD++D       L  +  ++      L   +   + GC+ L
Sbjct: 581 V-----NEKITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDAL 632

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 64.7 bits (158), Expect = 5e-11
 Identities = 48/406 (11%), Positives = 118/406 (29%), Gaps = 83/406 (20%)

Query: 55  LQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLS 114
                L    +  +          +       +    +   ++  +  ++  L  LR   
Sbjct: 156 EDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSN---NITFVSKAVMRLTKLRQFY 212

Query: 115 LHDCQHFGD-LSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRG 173
           + +     + +    E    E     ++      + +  L  L  +++ +C NL  +P  
Sbjct: 213 MGNSPFVAENICEAWENENSEYAQQYKT----EDLKWDNLKDLTDVEVYNCPNLTKLPTF 268

Query: 174 VLSRLRKLEELYMSKTFCHWQFENEDDSRSN-AKFIELGALSRLTSLHID---IPEGEIM 229
            L  L +++ + ++      +  + +  + +     +     ++  ++I    +    + 
Sbjct: 269 -LKALPEMQLINVACN----RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVE 323

Query: 230 PSDMSFQNLTSFSITIGGPEEVPLSD-----FIEVFSRKFKKRCSRAMGLSQ----DM-- 278
            S    + L                       +  F               +    ++  
Sbjct: 324 TSLQKMKKLGMLE----------CLYNQLEGKLPAFG-----------SEIKLASLNLAY 362

Query: 279 -RISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNS 337
            +I+ +P+       + E L+    N L+ I +       + +  +     NE+  +   
Sbjct: 363 NQITEIPANFCGFTEQVENLSFAH-NKLKYIPNIFDAKSVSVMSAIDFSY-NEIGSVDGK 420

Query: 338 LERTLRVTLLKLEWLMIVDNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQ 397
               L  T  K                          NV  +++ +    +   P  L  
Sbjct: 421 NFDPLDPTPFKG------------------------INVSSINLSNNQ--ISKFPKELFS 454

Query: 398 SFQNLQRLRVEGCELLVSVFEIERVNIAKEETELFSSLEKLTLIGL 443
           +   L  + + G  L     EI + N  K+E E F +   LT I L
Sbjct: 455 TGSPLSSINLMGNMLT----EIPK-NSLKDENENFKNTYLLTSIDL 495

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 56.2 bits (136), Expect = 2e-08
 Identities = 25/196 (12%), Positives = 55/196 (28%), Gaps = 26/196 (13%)

Query: 56  QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGG--SGVFSLFSLPSSLSFLINLRTL 113
              R+  L L+              + +L+VL LG     V      P  +S  ++    
Sbjct: 79  SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138

Query: 114 SLHDCQHFGDLSLIGELSLLEILDLSE------SDVSEIPVSFGRLGHLRLLDLTDCYNL 167
                 +    + +      +  DL +           I  S         +      N+
Sbjct: 139 QKMRMHYQK--TFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSN-NI 195

Query: 168 ELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGE 227
             + +  + RL KL + YM          +   + +  +  E            +  + +
Sbjct: 196 TFVSKA-VMRLTKLRQFYMG--------NSPFVAENICEAWENENSEYAQQYKTEDLKWD 246

Query: 228 IMPSDMSFQNLTSFSI 243
                 + ++LT   +
Sbjct: 247 ------NLKDLTDVEV 256

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 68.5 bits (168), Expect = 1e-12
 Identities = 45/226 (19%), Positives = 78/226 (34%), Gaps = 52/226 (23%)

Query: 33  NTFEDLTGISLMFNDIHEVHEG--LQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLG 90
               D T + L  NDI E+ +        L AL L  N +  I +  F  ++ L+ L + 
Sbjct: 51  EISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110

Query: 91  GSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGE-----LSLLEILDLSESDVSE 145
            +    L  +P +L    +L  L +HD +    +  + +     L  +  +++  + +  
Sbjct: 111 KN---HLVEIPPNL--PSSLVELRIHDNR----IRKVPKGVFSGLRNMNCIEMGGNPLEN 161

Query: 146 IPVSFGRLGHLRLLDLTDCYN-LELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSN 204
                G    L+L  L      L  IP+ +      L EL++                 N
Sbjct: 162 SGFEPGAFDGLKLNYLRISEAKLTGIPKDLPE---TLNELHLD---------------HN 203

Query: 205 A-KFIELGALSRLTSLHI---------DIPEGEIMPSDMSFQNLTS 240
             + IEL  L R + L+           I  G       S   L +
Sbjct: 204 KIQAIELEDLLRYSKLYRLGLGHNQIRMIENG-------SLSFLPT 242

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 59.3 bits (144), Expect = 1e-09
 Identities = 29/171 (16%), Positives = 61/171 (35%), Gaps = 23/171 (13%)

Query: 33  NTFED--LTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLG 90
             F+   L  + +    +  + + L    L  L L  N +  I          L  L LG
Sbjct: 167 GAFDGLKLNYLRISEAKLTGIPKDL-PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLG 225

Query: 91  GSGVFSLFSLPS-SLSFLINLRTLSLHDCQHFGDLSLI----GELSLLEILDLSESDVSE 145
            +    +  + + SLSFL  LR L L + +    LS +     +L LL+++ L  +++++
Sbjct: 226 HN---QIRMIENGSLSFLPTLRELHLDNNK----LSRVPAGLPDLKLLQVVYLHTNNITK 278

Query: 146 IPVS-------FGRLGHLRLLDLTDCY-NLELIPRGVLSRLRKLEELYMSK 188
           + V+         +  +   + L +       +       +     +    
Sbjct: 279 VGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGN 329

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 67.7 bits (166), Expect = 2e-12
 Identities = 25/162 (15%), Positives = 58/162 (35%), Gaps = 15/162 (9%)

Query: 31  SINTFEDLTGISLMFNDIHEVHEGL--QCPRLQALFLQKNDLLDIPDP-FFQGMKDLKVL 87
           S +  +    I L  N I  + +       R+Q L L+ N++  +           L+ L
Sbjct: 115 SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174

Query: 88  DLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLI----GELSLLEILDLSESDV 143
           +L  +    ++ +   +     L+TL L   +    L+ +       + +  + L  + +
Sbjct: 175 NLQYN---FIYDVKGQV-VFAKLKTLDLSSNK----LAFMGPEFQSAAGVTWISLRNNKL 226

Query: 144 SEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELY 185
             I  +     +L   DL          R   S+ ++++ + 
Sbjct: 227 VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 67.3 bits (165), Expect = 2e-12
 Identities = 36/230 (15%), Positives = 75/230 (32%), Gaps = 49/230 (21%)

Query: 48  IHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGG-------SGVFS-LFS 99
           IHE+ +     R +   +  + L        Q   ++K LDL G       +   +    
Sbjct: 2   IHEIKQNGN--RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK 59

Query: 100 L------------PSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVSEIP 147
           L               L  L  LRTL L++      +  +     +E L  + +++S + 
Sbjct: 60  LELLNLSSNVLYETLDLESLSTLRTLDLNNNY----VQELLVGPSIETLHAANNNISRVS 115

Query: 148 VSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKF 207
            S G+    + + L +   + ++         +++ L +          NE D+ + A+ 
Sbjct: 116 CSRGQ--GKKNIYLANN-KITMLRDLDEGCRSRVQYLDLK--------LNEIDTVNFAEL 164

Query: 208 IELGALSRLTSLHI------DIPEGEIMPS----DMSFQNLTSFSITIGG 247
               +   L  L++      D+    +       D+S   L         
Sbjct: 165 A--ASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQS 212

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 54.2 bits (131), Expect = 5e-08
 Identities = 22/178 (12%), Positives = 50/178 (28%), Gaps = 29/178 (16%)

Query: 31  SINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLG 90
            +  F  L  ++L  N ++E  +      L+ L L  N + ++          ++ L   
Sbjct: 53  DLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELL-----VGPSIETLHAA 107

Query: 91  G-------SGVF-SLFSL-----------PSSLSFLINLRTLSLHDCQ--HFGDLSLIGE 129
                           ++                    ++ L L   +        L   
Sbjct: 108 NNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS 167

Query: 130 LSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMS 187
              LE L+L  + + ++         L+ LDL+    L  +          +  + + 
Sbjct: 168 SDTLEHLNLQYNFIYDVKGQVV-FAKLKTLDLSSN-KLAFMGPE-FQSAAGVTWISLR 222

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 67.0 bits (164), Expect = 2e-12
 Identities = 39/167 (23%), Positives = 77/167 (46%), Gaps = 11/167 (6%)

Query: 25  ELKDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDL 84
           ++K    I    ++T + L  N + ++        L  LFL +N + D+     + +K L
Sbjct: 57  DIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDL--SSLKDLKKL 114

Query: 85  KVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVS 144
           K L L  +G+  +    + L  L  L +L L + +   D++++  L+ L+ L L ++ +S
Sbjct: 115 KSLSLEHNGISDI----NGLVHLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDNQIS 169

Query: 145 EIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFC 191
           +I      L  L+ L L+  +  +L     L+ L+ L+ L +    C
Sbjct: 170 DIV-PLAGLTKLQNLYLSKNHISDLRA---LAGLKNLDVLELFSQEC 212

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 66.2 bits (162), Expect = 4e-12
 Identities = 51/164 (31%), Positives = 74/164 (45%), Gaps = 13/164 (7%)

Query: 25  ELKDWPSINTFEDLTGISLMFNDIHEVHEGLQ-CPRLQALFLQKNDLLDIPDPFFQGMKD 83
            + D  + N    +  I    +DI  V +G+Q  P +  LFL  N L DI       +K+
Sbjct: 35  SVTDAVTQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKP--LANLKN 91

Query: 84  LKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDV 143
           L  L L  + V  L    SSL  L  L++LSL       D++ +  L  LE L L  + +
Sbjct: 92  LGWLFLDENKVKDL----SSLKDLKKLKSLSLEHNG-ISDINGLVHLPQLESLYLGNNKI 146

Query: 144 SEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMS 187
           ++I     RL  L  L L D   +  I    L+ L KL+ LY+S
Sbjct: 147 TDIT-VLSRLTKLDTLSLEDN-QISDIV--PLAGLTKLQNLYLS 186

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 36/171 (21%), Positives = 68/171 (39%), Gaps = 11/171 (6%)

Query: 19  LIKAGVELKDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFF 78
            I     +K   S + F +    +L    + +     +   +  +    +D+  +     
Sbjct: 7   TITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSV--QGI 64

Query: 79  QGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDL 138
           Q + ++  L L G+ +  +      L+ L NL  L L + +   DLS + +L  L+ L L
Sbjct: 65  QYLPNVTKLFLNGNKLTDI----KPLANLKNLGWLFLDENK-VKDLSSLKDLKKLKSLSL 119

Query: 139 SESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKT 189
             + +S+I      L  L  L L +    ++     LSRL KL+ L +   
Sbjct: 120 EHNGISDIN-GLVHLPQLESLYLGNNKITDITV---LSRLTKLDTLSLEDN 166

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 65.9 bits (161), Expect = 7e-12
 Identities = 32/163 (19%), Positives = 71/163 (43%), Gaps = 11/163 (6%)

Query: 25  ELKDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDL 84
            + D  +    + +T +S     +  +        L  L L+ N + D+     + +  +
Sbjct: 30  NVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKI 87

Query: 85  KVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVS 144
             L+L G+ + ++    S+++ L +++TL L   Q   D++ +  LS L++L L  + ++
Sbjct: 88  TELELSGNPLKNV----SAIAGLQSIKTLDLTSTQ-ITDVTPLAGLSNLQVLYLDLNQIT 142

Query: 145 EIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMS 187
            I      L +L+ L + +   +  +    L+ L KL  L   
Sbjct: 143 NIS-PLAGLTNLQYLSIGNA-QVSDLT--PLANLSKLTTLKAD 181

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 62.0 bits (151), Expect = 1e-10
 Identities = 27/164 (16%), Positives = 60/164 (36%), Gaps = 11/164 (6%)

Query: 26  LKDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLK 85
           +          +   I+   +++ +         +  L      +  I     Q + +L 
Sbjct: 9   INVIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTI--EGVQYLNNLI 66

Query: 86  VLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVSE 145
            L+L  + +  L    + L  L  +  L L       ++S I  L  ++ LDL+ + +++
Sbjct: 67  GLELKDNQITDL----APLKNLTKITELELSGNP-LKNVSAIAGLQSIKTLDLTSTQITD 121

Query: 146 IPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKT 189
           +      L +L++L L     +  I    L+ L  L+ L +   
Sbjct: 122 VT-PLAGLSNLQVLYLDLN-QITNIS--PLAGLTNLQYLSIGNA 161

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 20/138 (14%), Positives = 49/138 (35%), Gaps = 8/138 (5%)

Query: 26  LKDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLK 85
           + +   +    +L  +S+    + ++       +L  L    N + DI       + +L 
Sbjct: 141 ITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLI 198

Query: 86  VLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVSE 145
            + L  + +  +    S L+   NL  ++L +     +  +    +L+    +     + 
Sbjct: 199 EVHLKNNQISDV----SPLANTSNLFIVTLTNQTIT-NQPVFYNNNLVVPNVVKGPSGAP 253

Query: 146 I-PVSFGRLGHLRLLDLT 162
           I P +    G     +LT
Sbjct: 254 IAPATISDNGTYASPNLT 271

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 66.8 bits (163), Expect = 8e-12
 Identities = 28/179 (15%), Positives = 64/179 (35%), Gaps = 27/179 (15%)

Query: 35  FEDLTGISLMFNDIHEVHEGL--QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGS 92
           F ++   +   +    VH     +      L    N L D        + +L+ L L  +
Sbjct: 299 FSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMN 358

Query: 93  GVFSLFSLPSSLSFLINLRTLSLHDCQ--------HFGDLSLIGELSL------------ 132
            +  L  +    + + +L+ L +                   +  L++            
Sbjct: 359 QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC 418

Query: 133 ----LEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMS 187
               +++LDL  + +  IP    +L  L+ L++     L+ +P G+  RL  L+++++ 
Sbjct: 419 LPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLH 476

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 59.5 bits (144), Expect = 2e-09
 Identities = 48/368 (13%), Positives = 119/368 (32%), Gaps = 41/368 (11%)

Query: 58  PRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSS-LSFLINLRTLSLH 116
            +   L + +N + ++       +  L++L +  +    +  L  S   F   L  L L 
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHN---RIQYLDISVFKFNQELEYLDLS 77

Query: 117 DCQHFGDLSLIGELSLLEILDLSESDVSEIPVS--FGRLGHLRLLDLTDCYNLELIPRGV 174
             +    +S       L+ LDLS +    +P+   FG +  L+ L L+  +    + +  
Sbjct: 78  HNK-LVKIS-CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH----LEKSS 131

Query: 175 LSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRL--TSLHIDIPEGEIMPSD 232
           +  +  L    +                +  +  +   L      SLHI  P  +     
Sbjct: 132 VLPIAHLNISKVLL----------VLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFI 181

Query: 233 MSFQNLTSFSITI----GGPEEVPLSDFIEVFSRKFKKRCSRAMGLSQ-DMRISALPSWI 287
           +     T  ++ +       E+   S F+ + ++         + L+  +   ++    +
Sbjct: 182 LDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRIL 241

Query: 288 KNLLLRS-EILALGDVNDLENIVSDLAHDGFNELMFLAI--VGCNEMKYLLNSLERTLRV 344
           + +   +    ++ +V     +           L  L+I  V  +   +  + +      
Sbjct: 242 QLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIF-- 299

Query: 345 TLLKLEWLMIVDNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQR 404
           + + ++   +   R    +C  +     +S    LD  +    L             L+ 
Sbjct: 300 SNMNIKNFTVSGTRMVHMLCPSK-----ISPFLHLDFSNNL--LTDTVFENCGHLTELET 352

Query: 405 LRVEGCEL 412
           L ++  +L
Sbjct: 353 LILQMNQL 360

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 66.8 bits (162), Expect = 1e-11
 Identities = 78/613 (12%), Positives = 171/613 (27%), Gaps = 227/613 (37%)

Query: 140 ESDVSEIPVSFGRLGHLRLLDLT---DCYNLELIPRGVLSRLRKLEELYMSK-------- 188
           + +  E    +  +  +         DC +++ +P+ +LS+  +++ + MSK        
Sbjct: 8   DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSK-EEIDHIIMSKDAVSGTLR 66

Query: 189 ---TFCH------------------------WQFENEDDSRSNAKFIELGALSRL----- 216
              T                            + E    S     +IE     RL     
Sbjct: 67  LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE--QRDRLYNDNQ 124

Query: 217 -----------------TSLHIDIPEGEI----MP------------SDMSFQNLTSFSI 243
                             +L    P   +    +                  Q    F I
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184

Query: 244 ---TIGG---PEEV--PLSDFIEVFSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSE 295
               +     PE V   L   +      +  R   +  +    RI ++ + ++ LL    
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL--RIHSIQAELRRLLKSKP 242

Query: 296 ----ILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLL--------NSL--ERT 341
               +L L +V + +        + FN       + C   K LL        + L    T
Sbjct: 243 YENCLLVLLNVQNAKAW------NAFN-------LSC---KILLTTRFKQVTDFLSAATT 286

Query: 342 LRVTLLKLEWLMIVDN-----RNFVEICHGQLPA-GCLSNVKRLDVRDCGSVLKILPSHL 395
             ++L      +  D        +++     LP     +N +RL +      ++   +  
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI--IAESIRDGLAT- 343

Query: 396 VQSFQNLQRLR-------VEGC-ELL-----------VSVFEIERVNI------------ 424
              + N + +        +E    +L           +SVF     +I            
Sbjct: 344 ---WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP-PSAHIPTILLSLIWFDV 399

Query: 425 AKEETELF-SSLEKLTLIGLPRMTDIWKGDTQFVSLHDL-----KKI--------RVVFC 470
            K +  +  + L K +L+      +    ++   S+  +      K+         +V  
Sbjct: 400 IKSDVMVVVNKLHKYSLV------EKQPKESTI-SIPSIYLELKVKLENEYALHRSIVDH 452

Query: 471 DELRQVFPAN------------------LGKKAAAEEMVLYRNR-------RDQIHIHAT 505
             + + F ++                  L      E M L+R           +I  H +
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI-RHDS 511

Query: 506 TSTSSPTPSLGNLVSITIRGCGKLRNLFTTS------MVKSLVR-LESLE--VSRCPT-- 554
           T+ ++    L  L  +        +     +      +V +++  L  +E  +       
Sbjct: 512 TAWNASGSILNTLQQLK-----FYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTD 566

Query: 555 -LQEIIMNDEGEV 566
            L+  +M ++  +
Sbjct: 567 LLRIALMAEDEAI 579

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 8e-05
 Identities = 62/428 (14%), Positives = 115/428 (26%), Gaps = 122/428 (28%)

Query: 3   DVVRYVAQQIASKNK-FLIKAGVELKDWPSINTFEDL---------TGISLMFNDIHEVH 52
           DV      Q     K F +           +   + L         +      N    +H
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228

Query: 53  EGLQCPRLQALFLQK---NDLL---DIPDP-----FFQGMK------DLKVLD-LGGSGV 94
                  L+ L   K   N LL   ++ +      F    K        +V D L  +  
Sbjct: 229 SIQA--ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT 286

Query: 95  FSL--------FSLPSSLSFLINLRTLSLHD-----CQ-HFGDLSLIGELSLLEILDLSE 140
             +         +     S L+        D        +   LS+I E  + + L   +
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES-IRDGLATWD 345

Query: 141 -------SDVSEIPVSFGRLGHLRLLDLTDCY-NLEL------IPRGVLSRL-----RKL 181
                    ++ I  S   L  L   +    +  L +      IP  +LS +     +  
Sbjct: 346 NWKHVNCDKLTTIIESS--LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD 403

Query: 182 EELYMSKTFCHWQFENEDDSRSNAKFI------ELGALSRLTSLHIDI-----------P 224
             + ++K   H     E   + +   I          L    +LH  I            
Sbjct: 404 VMVVVNK--LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS 461

Query: 225 EGEIMPS-DMSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSRAMGLSQDMRISAL 283
           +  I P  D  F +     +     + +   + + +F   F            D R    
Sbjct: 462 DDLIPPYLDQYFYSHIGHHL-----KNIEHPERMTLFRMVF-----------LDFR---- 501

Query: 284 PSWIKNLLLRSEILALGDVNDLENIVSDLA--------HDGFNELMFLAIVGCNEMKYLL 335
             +++  + R +  A      + N +  L         +D   E +  AI     + +L 
Sbjct: 502 --FLEQKI-RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI-----LDFLP 553

Query: 336 NSLERTLR 343
              E  + 
Sbjct: 554 KIEENLIC 561

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 66.0 bits (161), Expect = 2e-11
 Identities = 34/183 (18%), Positives = 60/183 (32%), Gaps = 35/183 (19%)

Query: 35  FEDLTGISLMFNDIHEVHEG--LQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGS 92
           F ++    L  +D   +H            L   +N   D        +K L+ L L  +
Sbjct: 328 FAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN 387

Query: 93  GVFSLFSLPSSLSFLINLRTLSLHDCQH-----------FGDLSLIGELSL--------- 132
               L +         N+ +L   D                    I  L+L         
Sbjct: 388 ---GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV 444

Query: 133 -------LEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYN-LELIPRGVLSRLRKLEEL 184
                  +++LDL  + +  IP     L  L+ L++    N L+ +P GV  RL  L+ +
Sbjct: 445 FRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVAS--NQLKSVPDGVFDRLTSLQYI 502

Query: 185 YMS 187
           ++ 
Sbjct: 503 WLH 505

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 50.3 bits (120), Expect = 2e-06
 Identities = 56/382 (14%), Positives = 108/382 (28%), Gaps = 51/382 (13%)

Query: 37  DLTGISLMFNDIHEVHEG--LQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGV 94
               +SL  N I E+          L+ L L  N +  +    F   +DL+ LD+  +  
Sbjct: 53  RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-- 110

Query: 95  FSLFSLPSSLSFLINLRTLSLH--DCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGR 152
             L ++      + +LR L L   D          G L+ L  L LS +   ++      
Sbjct: 111 -RLQNISCCP--MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD--LLP 165

Query: 153 LGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGA 212
           + HL L  +        I  G    L+      +   F                     +
Sbjct: 166 VAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNS---------LFSVQVNMS 216

Query: 213 LSRLTSLHIDIPEGEIMPSDMSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSRAM 272
           ++ L  L       ++    ++ +N               ++   E+         +   
Sbjct: 217 VNALGHL-------QLSNIKLNDENCQRL-----------MTFLSELTRGPTLLNVTLQH 258

Query: 273 GLSQDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAI--VGCNE 330
             +       L  +     +    L + ++   E I  +        L  L I  V    
Sbjct: 259 IETTWKCSVKLFQFFWPRPVEY--LNIYNLTITERIDREEFTYSETALKSLMIEHVKNQV 316

Query: 331 MKYLLNSLERTLRVTLLKLEWLMIVDNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKI 390
             +   +L        + ++ L I D      +C         S+   L+          
Sbjct: 317 FLFSKEALYSVF--AEMNIKMLSISDTPFIHMVC-----PPSPSSFTFLNFTQNV--FTD 367

Query: 391 LPSHLVQSFQNLQRLRVEGCEL 412
                  + + LQ L ++   L
Sbjct: 368 SVFQGCSTLKRLQTLILQRNGL 389

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 64.8 bits (158), Expect = 2e-11
 Identities = 49/198 (24%), Positives = 82/198 (41%), Gaps = 17/198 (8%)

Query: 37  DLTGISLMFNDIHE-VHEGL--QCPRLQALFLQK-NDLLDIPDPFFQGMKDLKVLDLGGS 92
           DL  I +  ND+ E +   +    P+L  + ++K N+LL I    FQ + +L+ L +  +
Sbjct: 55  DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT 114

Query: 93  GVFSLFSLPS-SLSFLINLRTLSLHDC---QHFGDLSLIGELSLLEILDLSESDVSEIPV 148
           G   +  LP       +    L + D          S +G      IL L+++ + EI  
Sbjct: 115 G---IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHN 171

Query: 149 SFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMS----KTFCHWQFEN--EDDSR 202
           S      L  L+L+D  NLE +P  V         L +S     +   +  EN  +  +R
Sbjct: 172 SAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRAR 231

Query: 203 SNAKFIELGALSRLTSLH 220
           S     +L  L +L +L 
Sbjct: 232 STYNLKKLPTLEKLVALM 249

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 62.9 bits (153), Expect = 8e-11
 Identities = 38/211 (18%), Positives = 71/211 (33%), Gaps = 18/211 (8%)

Query: 46  NDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLS 105
           + + E+   L       L      L  I    F G  DL+ +++  + V  +       S
Sbjct: 19  SKVTEIPSDLP-RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIE-ADVFS 76

Query: 106 FLINLRTLSLHDCQHFGDLS--LIGELSLLEILDLSESDVSEIP-VSFGRLGHLRLLDLT 162
            L  L  + +    +   ++      L  L+ L +S + +  +P V         LLD+ 
Sbjct: 77  NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQ 136

Query: 163 DCYNLELIPRGVLSRLR-KLEELYMSK---------TFCHWQFENEDDSRSNA-KFIELG 211
           D  N+  I R     L  +   L+++K          F   Q +  + S +N  + +   
Sbjct: 137 DNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPND 196

Query: 212 ALSRLTSLH-IDIPEGEI-MPSDMSFQNLTS 240
                +    +DI    I        +NL  
Sbjct: 197 VFHGASGPVILDISRTRIHSLPSYGLENLKK 227

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.9 bits (151), Expect = 3e-11
 Identities = 30/155 (19%), Positives = 59/155 (38%), Gaps = 10/155 (6%)

Query: 35  FEDLTGISLMFNDIHEVHEGLQ-CPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSG 93
              LT I+L   ++ ++  G++    ++ L +      +       G+ +L+ L + G  
Sbjct: 43  MNSLTYITLANINVTDL-TGIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKD 99

Query: 94  VFSLFSLPSSLSFLINLRTLSLHDCQ-HFGDLSLIGELSLLEILDLSESDVSEIPVSFGR 152
           V S      +LS L +L  L +         L+ I  L  +  +DLS +      +    
Sbjct: 100 VTS--DKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKT 157

Query: 153 LGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMS 187
           L  L+ L++      +      +    KL +LY  
Sbjct: 158 LPELKSLNIQFDGVHDYRG---IEDFPKLNQLYAF 189

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 59.6 bits (145), Expect = 2e-10
 Identities = 30/162 (18%), Positives = 59/162 (36%), Gaps = 25/162 (15%)

Query: 59  RLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDC 118
                 L ++   +I       M  L  + L    V  L    + + +  N++ L++++ 
Sbjct: 24  AYLNGLLGQSSTANIT---EAQMNSLTYITLANINVTDL----TGIEYAHNIKDLTINNI 76

Query: 119 QHFGDLSLIGELSLLEILDLSESDVSEIPVS-FGRLGHLRLLDLTDCYNLELIPRGVLSR 177
               + + I  LS LE L +   DV+   +     L  L LLD++   + + I    ++ 
Sbjct: 77  H-ATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTK-INT 134

Query: 178 LRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSL 219
           L K+  + +S                N    ++  L  L  L
Sbjct: 135 LPKVNSIDLS---------------YNGAITDIMPLKTLPEL 161

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 59.2 bits (144), Expect = 3e-10
 Identities = 21/140 (15%), Positives = 47/140 (33%), Gaps = 5/140 (3%)

Query: 25  ELKDWPSINTFEDLTGISLMFNDIHEVHEGL-QCPRLQALFLQKNDLLDIPDPFFQGMKD 83
            + D   I    ++  +++           +     L+ L +   D+     P   G+  
Sbjct: 55  NVTDLTGIEYAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTS 113

Query: 84  LKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDV 143
           L +LD+  S      S+ + ++ L  + ++ L       D+  +  L  L+ L++    V
Sbjct: 114 LTLLDISHSAHDD--SILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGV 171

Query: 144 SEIPVSFGRLGHLRLLDLTD 163
            +          L  L    
Sbjct: 172 HDYR-GIEDFPKLNQLYAFS 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 18/124 (14%), Positives = 38/124 (30%), Gaps = 6/124 (4%)

Query: 25  ELKDWPSINTFEDLTGISLMFNDIHEVH-EGL-QCPRLQALFLQKNDLLDIPDPFFQGMK 82
              ++  I+   +L  + +M  D+       L     L  L +  +   D        + 
Sbjct: 77  HATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLP 136

Query: 83  DLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESD 142
            +  +DL  +      +    L  L  L++L++       D   I +   L  L      
Sbjct: 137 KVNSIDLSYN---GAITDIMPLKTLPELKSLNIQFDG-VHDYRGIEDFPKLNQLYAFSQT 192

Query: 143 VSEI 146
           +   
Sbjct: 193 IGGK 196

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 64.8 bits (158), Expect = 3e-11
 Identities = 34/141 (24%), Positives = 61/141 (43%), Gaps = 15/141 (10%)

Query: 54  GLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPS-SLSFLINLRT 112
           GL+   ++   L K+ +  +    F    DL+ L L  +    +  +   +   L +L  
Sbjct: 271 GLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQN---EINKIDDNAFWGLTHLLK 327

Query: 113 LSLHDCQHFGDLSLIGE-----LSLLEILDLSESDVSEIPV-SFGRLGHLRLLDLTDCYN 166
           L+L        L  I       L  LE+LDLS + +  +   SF  L +L+ L L     
Sbjct: 328 LNLSQNF----LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN-Q 382

Query: 167 LELIPRGVLSRLRKLEELYMS 187
           L+ +P G+  RL  L+++++ 
Sbjct: 383 LKSVPDGIFDRLTSLQKIWLH 403

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 59.4 bits (144), Expect = 2e-09
 Identities = 36/232 (15%), Positives = 64/232 (27%), Gaps = 32/232 (13%)

Query: 38  LTGISLMFNDIH-EVHEGL--QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGV 94
           L  + +        +          L  L L  N  L +    F G+ +L+VL L    +
Sbjct: 56  LQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNL 115

Query: 95  FSLFSLPSSLSFLINLRTLSLHDCQ--HFGDLSLIGELSLLEILDLSESDVSEIPV-SFG 151
                  +    L +L  L L D         S    +    +LDL+ + V  I      
Sbjct: 116 DGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLL 175

Query: 152 RLGHLRLLDLTDCYN---------LELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSR 202
                    L              L     G   +   +  L +S         N     
Sbjct: 176 NFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLS--------GNGFKES 227

Query: 203 SNAKFIELGALSRLTSLHIDIPEGEIM---------PSDMSFQNLTSFSITI 245
              +F +  A +++ SL +                 P + +F+ L +  +  
Sbjct: 228 MAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKT 279

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 53.2 bits (128), Expect = 2e-07
 Identities = 28/136 (20%), Positives = 57/136 (41%), Gaps = 9/136 (6%)

Query: 58  PRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHD 117
             +  + L  N + ++ +  F  ++DL+ L +       +    ++   L +L  L L  
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIR-NNTFRGLSSLIILKLDY 88

Query: 118 CQHFGDLS--LIGELSLLEILDLSESDVSEIPV---SFGRLGHLRLLDLTDCYNLE-LIP 171
            Q F  L       L+ LE+L L++ ++    +    F  L  L +L L D  N++ + P
Sbjct: 89  NQ-FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQP 146

Query: 172 RGVLSRLRKLEELYMS 187
                 +R+   L ++
Sbjct: 147 ASFFLNMRRFHVLDLT 162

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 64.1 bits (156), Expect = 4e-11
 Identities = 37/183 (20%), Positives = 70/183 (38%), Gaps = 28/183 (15%)

Query: 66  QKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSF--LINLRTLSLHDCQHFGD 123
            K  L ++P           +LDL  +   +L  L +  +   L NL +L L        
Sbjct: 26  SKQQLPNVPQSLP---SYTALLDLSHN---NLSRLRAEWTPTRLTNLHSLLLSHNH---- 75

Query: 124 LSLIGE-----LSLLEILDLSESDVSEIPV-SFGRLGHLRLLDLTDCYNLELIPRGVLSR 177
           L+ I       +  L  LDLS + +  +    F  L  L +L L +  ++ ++ R     
Sbjct: 76  LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNN-HIVVVDRNAFED 134

Query: 178 LRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSDMSFQN 237
           + +L++LY+S        +N+          +   L +L  L +   + + +P     Q 
Sbjct: 135 MAQLQKLYLS--------QNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTD-LQK 185

Query: 238 LTS 240
           L +
Sbjct: 186 LPA 188

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 62.9 bits (153), Expect = 8e-11
 Identities = 38/173 (21%), Positives = 68/173 (39%), Gaps = 22/173 (12%)

Query: 26  LKDWPSINTFEDLTGISLMFNDIHEVHEGL---QCPRLQALFLQKNDLLDIPDPFFQGMK 82
           L + P  +       + L  N++  +       +   L +L L  N L  I    F  + 
Sbjct: 30  LPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP 88

Query: 83  DLKVLDLGGSGVFSLFSLPS-SLSFLINLRTLSLHDCQHFGDLSLIGE-----LSLLEIL 136
           +L+ LDL  +    L +L     S L  L  L L++      + ++       ++ L+ L
Sbjct: 89  NLRYLDLSSN---HLHTLDEFLFSDLQALEVLLLYNNH----IVVVDRNAFEDMAQLQKL 141

Query: 137 DLSESDVSEIP----VSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELY 185
            LS++ +S  P        +L  L LLDL+    L+ +P   L +L    +  
Sbjct: 142 YLSQNQISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPLTDLQKLPAWVKNG 193

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 64.5 bits (157), Expect = 5e-11
 Identities = 36/231 (15%), Positives = 76/231 (32%), Gaps = 51/231 (22%)

Query: 48  IHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGG-------SGVFS---- 96
           IHE+ +     R +   +  + L        Q   ++K LDL G       +   +    
Sbjct: 2   IHEIKQNGN--RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK 59

Query: 97  ----------LFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVSEI 146
                     L+     L  L  LRTL L++      +  +     +E L  + +++S +
Sbjct: 60  LELLNLSSNVLYETL-DLESLSTLRTLDLNNNY----VQELLVGPSIETLHAANNNISRV 114

Query: 147 PVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAK 206
             S G+    + + L +   + ++         +++ L +          NE D+ + A+
Sbjct: 115 SCSRGQ--GKKNIYLANN-KITMLRDLDEGCRSRVQYLDLK--------LNEIDTVNFAE 163

Query: 207 FIELGALSRLTSLHI------DIPEGEIMPS----DMSFQNLTSFSITIGG 247
                +   L  L++      D+    +       D+S   L         
Sbjct: 164 LA--ASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQS 212

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 62.2 bits (151), Expect = 2e-10
 Identities = 28/151 (18%), Positives = 52/151 (34%), Gaps = 6/151 (3%)

Query: 32  INTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGG 91
             + + L  ++L +N I++V   +   +L+ L L  N L  +  P FQ    +  + L  
Sbjct: 165 AASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRN 223

Query: 92  SGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVSEIPV-SF 150
           +    L  +  +L F  NL    L                   +  +++  V ++   + 
Sbjct: 224 N---KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280

Query: 151 GRLGHLRLLDLTDCYNLELIPRGVLSRLRKL 181
                  L      Y  E +P     RL  L
Sbjct: 281 EECTVPTLGHYGA-YCCEDLPAPFADRLIAL 310

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 51.0 bits (122), Expect = 8e-07
 Identities = 21/171 (12%), Positives = 48/171 (28%), Gaps = 29/171 (16%)

Query: 38  LTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGG------ 91
           L  ++L  N ++E  +      L+ L L  N + ++          ++ L          
Sbjct: 60  LELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRV 114

Query: 92  -SGVF-SLFSL-----------PSSLSFLINLRTLSLHDCQ--HFGDLSLIGELSLLEIL 136
                    ++                    ++ L L   +        L      LE L
Sbjct: 115 SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174

Query: 137 DLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMS 187
           +L  + + ++         L+ LDL+    L  +          +  + + 
Sbjct: 175 NLQYNFIYDVKGQVV-FAKLKTLDLSSN-KLAFMGPE-FQSAAGVTWISLR 222

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 62.0 bits (151), Expect = 9e-11
 Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 12/163 (7%)

Query: 25  ELKDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDL 84
            + D  S      +   +   ++I  +        L+ L L  N + D+     + +  L
Sbjct: 30  SVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDL--SPLKDLTKL 87

Query: 85  KVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVS 144
           + L +  + + +L    + +     L  L L + +   D   +  L  LEIL +  + + 
Sbjct: 88  EELSVNRNRLKNL----NGIPSA-CLSRLFLDNNE-LRDTDSLIHLKNLEILSIRNNKLK 141

Query: 145 EIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMS 187
            I    G L  L +LDL             L+RL+K+  + ++
Sbjct: 142 SIV-MLGFLSKLEVLDLHGNEITNTGG---LTRLKKVNWIDLT 180

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 30/147 (20%), Positives = 56/147 (38%), Gaps = 10/147 (6%)

Query: 25  ELKDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDL 84
           ++ D   +     L  +S+  N +  +  G+    L  LFL  N+L D        +K+L
Sbjct: 74  QISDLSPLKDLTKLEELSVNRNRLKNL-NGIPSACLSRLFLDNNELRDTDS--LIHLKNL 130

Query: 85  KVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVS 144
           ++L +  + + S+      L FL  L  L LH  +   +   +  L  +  +DL+     
Sbjct: 131 EILSIRNNKLKSI----VMLGFLSKLEVLDLHGNE-ITNTGGLTRLKKVNWIDLTGQKCV 185

Query: 145 EIPVSFGRLGHLRLLDLTDCYNLELIP 171
             PV       L + +     +   I 
Sbjct: 186 NEPVK--YQPELYITNTVKDPDGRWIS 210

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 57.0 bits (138), Expect = 4e-09
 Identities = 29/163 (17%), Positives = 60/163 (36%), Gaps = 12/163 (7%)

Query: 25  ELKDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDL 84
            +          +    +L    + ++    +   +Q      +++  +     Q   +L
Sbjct: 8   PINQVFPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAG--MQFFTNL 65

Query: 85  KVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVS 144
           K L L  + +  L    S L  L  L  LS++  +   +L+ I     L  L L  +++ 
Sbjct: 66  KELHLSHNQISDL----SPLKDLTKLEELSVNRNR-LKNLNGIPSAC-LSRLFLDNNELR 119

Query: 145 EIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMS 187
           +   S   L +L +L + +     ++    L  L KLE L + 
Sbjct: 120 DTD-SLIHLKNLEILSIRNNKLKSIVM---LGFLSKLEVLDLH 158

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 55.8 bits (135), Expect = 9e-09
 Identities = 29/142 (20%), Positives = 55/142 (38%), Gaps = 12/142 (8%)

Query: 46  NDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLS 105
             I++V             L K  + D+     + +  ++  +   S + SL    + + 
Sbjct: 7   TPINQVFPDPGLANAVKQNLGKQSVTDL--VSQKELSGVQNFNGDNSNIQSL----AGMQ 60

Query: 106 FLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCY 165
           F  NL+ L L   Q   DLS + +L+ LE L ++ + +  +  +      L  L L +  
Sbjct: 61  FFTNLKELHLSHNQ-ISDLSPLKDLTKLEELSVNRNRLKNL--NGIPSACLSRLFLDNNE 117

Query: 166 NLELIPRGVLSRLRKLEELYMS 187
             +      L  L+ LE L + 
Sbjct: 118 LRDTDS---LIHLKNLEILSIR 136

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 61.7 bits (150), Expect = 1e-10
 Identities = 38/166 (22%), Positives = 65/166 (39%), Gaps = 24/166 (14%)

Query: 56  QC-PRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLS 114
                   +   K +L  +P       KD  +L L  + +++     ++L     L  L+
Sbjct: 7   SKVASHLEVNCDKRNLTALPPDLP---KDTTILHLSENLLYTFS--LATLMPYTRLTQLN 61

Query: 115 LHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGV 174
           L   +    L + G L +L  LDLS + +  +P+    L  L +LD++    L  +P G 
Sbjct: 62  LDRAE-LTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGA 119

Query: 175 LSRLRKLEELYMSKTFCHWQFENEDDSRSNA-KFIELGALSRLTSL 219
           L  L +L+ELY+                 N  K +  G L+    L
Sbjct: 120 LRGLGELQELYLK---------------GNELKTLPPGLLTPTPKL 150

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 57.4 bits (139), Expect = 3e-09
 Identities = 40/159 (25%), Positives = 64/159 (40%), Gaps = 21/159 (13%)

Query: 38  LTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSL 97
           LT ++L   ++ ++      P L  L L  N L  +P    Q +  L VLD+  +    L
Sbjct: 57  LTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNR---L 112

Query: 98  FSLPSSLSF--LINLRTLSLHDCQHFGDLSLIGE-----LSLLEILDLSESDVSEIPVS- 149
            SLP       L  L+ L L   +    L  +          LE L L+ ++++E+P   
Sbjct: 113 TSLPLGA-LRGLGELQELYLKGNE----LKTLPPGLLTPTPKLEKLSLANNNLTELPAGL 167

Query: 150 FGRLGHLRLLDLTDCYN-LELIPRGVLSRLRKLEELYMS 187
              L +L  L L +  N L  IP+G       L   ++ 
Sbjct: 168 LNGLENLDTLLLQE--NSLYTIPKGFFGSH-LLPFAFLH 203

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 61.8 bits (151), Expect = 2e-10
 Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 6/108 (5%)

Query: 84  LKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHF-GDL-SLIGELSLLEILDLSES 141
           +  LDL G  +   + +PSSL+ L  L  L +    +  G +   I +L+ L  L ++ +
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 142 DVS-EIPVSFGRLGHLRLLDLTDCYNLE-LIPRGVLSRLRKLEELYMS 187
           +VS  IP    ++  L  LD +    L   +P   +S L  L  +   
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYN-ALSGTLPPS-ISSLPNLVGITFD 157

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 59.9 bits (146), Expect = 6e-10
 Identities = 42/229 (18%), Positives = 77/229 (33%), Gaps = 70/229 (30%)

Query: 56  QCPRLQALFLQKNDLL-DIPDPFFQGMKDLKVLDLGG---SGVFSLFSLPSSLSFLINLR 111
           +  +L  L++   ++   IP  F   +K L  LD      SG     +LP S+S L NL 
Sbjct: 99  KLTQLHYLYITHTNVSGAIP-DFLSQIKTLVTLDFSYNALSG-----TLPPSISSLPNLV 152

Query: 112 TLSLHDCQ-------HFGDL-SLIGELSL-----------------LEILDLSESDVS-E 145
            ++    +        +G    L   +++                 L  +DLS + +  +
Sbjct: 153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGD 212

Query: 146 IPVSFGRLGHLRLLDLTDCYNLE-LIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSN 204
             V FG   + + + L    +L   + +  +   + L  L +                +N
Sbjct: 213 ASVLFGSDKNTQKIHLAKN-SLAFDLGK--VGLSKNLNGLDLR---------------NN 254

Query: 205 AKF-----IELGALSRLTSL-----HIDIPEGEIMPSDMSFQNLTSFSI 243
            +        L  L  L SL     ++    GEI P   + Q     + 
Sbjct: 255 -RIYGTLPQGLTQLKFLHSLNVSFNNL---CGEI-PQGGNLQRFDVSAY 298

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 59.5 bits (145), Expect = 7e-10
 Identities = 26/115 (22%), Positives = 44/115 (38%), Gaps = 15/115 (13%)

Query: 56  QCPRLQALFLQKNDL---LDIPDPFFQGMKDLKVLDLGG----SGVFSLFSLPSSLSFLI 108
           Q  R+  L L   +L     IP      +  L  L +GG     G      +P +++ L 
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIP-SSLANLPYLNFLYIGGINNLVG-----PIPPAIAKLT 101

Query: 109 NLRTLSLHDCQHFGDL-SLIGELSLLEILDLSESDVS-EIPVSFGRLGHLRLLDL 161
            L  L +      G +   + ++  L  LD S + +S  +P S   L +L  +  
Sbjct: 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF 156

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 27/137 (19%), Positives = 51/137 (37%), Gaps = 10/137 (7%)

Query: 58  PRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSF--LINLRTLSL 115
           P  Q L L +  L  IP   F  + ++  + +      +L  L S  SF  L  +  + +
Sbjct: 31  PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV--TLQQLESH-SFYNLSKVTHIEI 87

Query: 116 HDCQHFGDLS--LIGELSLLEILDLSESDVSEIP--VSFGRLGHLRLLDLTDCYNLELIP 171
            + ++   +    + EL LL+ L +  + +   P            +L++TD   +  IP
Sbjct: 88  RNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIP 147

Query: 172 RGVLSRLRK-LEELYMS 187
                 L      L + 
Sbjct: 148 VNAFQGLCNETLTLKLY 164

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 56.6 bits (137), Expect = 4e-09
 Identities = 23/193 (11%), Positives = 57/193 (29%), Gaps = 37/193 (19%)

Query: 30  PSINTFEDLTGISLMFNDIHEVHEGL--QCPRLQALFLQKNDLL-DIPDPFFQGMKDLKV 86
           PS+        + L+   +  +        P +  +++  +  L  +    F  +  +  
Sbjct: 27  PSLPP--STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTH 84

Query: 87  LDLGGSGVFSLFSLPSS-LSFLINLRTLSLHDCQ--HFGDLSLIGEL------------- 130
           +++  +   +L  +    L  L  L+ L + +     F DL+ +                
Sbjct: 85  IEIRNTR--NLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPY 142

Query: 131 -------------SLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSR 177
                        +    L L  +  + +         L  + L     L +I +     
Sbjct: 143 MTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGG 202

Query: 178 LR-KLEELYMSKT 189
           +      L +S+T
Sbjct: 203 VYSGPSLLDVSQT 215

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 17/94 (18%)

Query: 133 LEILDLSESDVSEIPV-SFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFC 191
            + L L E+ +  IP  +F  L ++  + ++    L+ +       L K+  + +  T  
Sbjct: 33  TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT-- 90

Query: 192 HWQFENEDDSRSNAKFIELGA---LSRLTSLHID 222
                       N  +I+  A   L  L  L I 
Sbjct: 91  -----------RNLTYIDPDALKELPLLKFLGIF 113

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 60.4 bits (147), Expect = 3e-10
 Identities = 49/192 (25%), Positives = 76/192 (39%), Gaps = 35/192 (18%)

Query: 60  LQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSL-SFLINLRTLSLHDC 118
            + L LQ N L  +P   F  +  L++L L  +    L +LP+ +   L NL TL + D 
Sbjct: 39  TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN---KLQTLPAGIFKELKNLETLWVTDN 95

Query: 119 QHFGDLSLI-----GELSLLEILDLSESDVSEIPVS-FGRLGHLRLLDLTDCYNLELIPR 172
           +    L  +      +L  L  L L  + +  +P   F  L  L  L L     L+ +P+
Sbjct: 96  K----LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPK 150

Query: 173 GVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHI----DIPEGEI 228
           GV  +L  L+EL +          N+        F +L  L  L  L       +PEG  
Sbjct: 151 GVFDKLTSLKELRLY--------NNQLKRVPEGAFDKLTELKTL-KLDNNQLKRVPEG-- 199

Query: 229 MPSDMSFQNLTS 240
                +F +L  
Sbjct: 200 -----AFDSLEK 206

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 59.6 bits (145), Expect = 5e-10
 Identities = 41/160 (25%), Positives = 69/160 (43%), Gaps = 19/160 (11%)

Query: 38  LTGISLMFNDIHEVHEGL--QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVF 95
           L  + L  N +  +  G+  +   L+ L++  N L  +P   F  + +L  L L  +   
Sbjct: 63  LRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRN--- 119

Query: 96  SLFSLPSSLSF--LINLRTLSLHDCQHFGDLSLIGE-----LSLLEILDLSESDVSEIPV 148
            L SLP  + F  L  L  LSL   +    L  + +     L+ L+ L L  + +  +P 
Sbjct: 120 QLKSLPPRV-FDSLTKLTYLSLGYNE----LQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174

Query: 149 S-FGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMS 187
             F +L  L+ L L +   L+ +P G    L KL+ L + 
Sbjct: 175 GAFDKLTELKTLKLDN-NQLKRVPEGAFDSLEKLKMLQLQ 213

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 59.2 bits (144), Expect = 2e-09
 Identities = 31/150 (20%), Positives = 56/150 (37%), Gaps = 19/150 (12%)

Query: 38  LTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSL 97
              + L    +  + E    P L++L    N L ++P+     +K L V +       +L
Sbjct: 73  AHELELNNLGLSSLPELP--PHLESLVASCNSLTELPELPQS-LKSLLVDNNNLK---AL 126

Query: 98  FSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLR 157
             LP        L  L + + Q    L  +   S L+I+D+  + + ++P        L 
Sbjct: 127 SDLPP------LLEYLGVSNNQ-LEKLPELQNSSFLKIIDVDNNSLKKLPDL---PPSLE 176

Query: 158 LLDLTDCYNLELIPRGVLSRLRKLEELYMS 187
            +   +   LE +P   L  L  L  +Y  
Sbjct: 177 FIAAGNN-QLEELP--ELQNLPFLTAIYAD 203

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 54.6 bits (132), Expect = 5e-08
 Identities = 36/163 (22%), Positives = 64/163 (39%), Gaps = 23/163 (14%)

Query: 25  ELKDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDL 84
            L++ P +     LT I    N +  + +    P L+AL ++ N L D+P+   Q +  L
Sbjct: 226 ILEELPELQNLPFLTTIYADNNLLKTLPDLP--PSLEALNVRDNYLTDLPE-LPQSLTFL 282

Query: 85  KVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVS 144
            V +   S       L        NL  L+    +     SL      LE L++S + + 
Sbjct: 283 DVSENIFS------GLSELPP---NLYYLNASSNEI---RSLCDLPPSLEELNVSNNKLI 330

Query: 145 EIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMS 187
           E+P        L  L  +   +L  +P       + L++L++ 
Sbjct: 331 ELPAL---PPRLERLIASFN-HLAEVP----ELPQNLKQLHVE 365

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 29/152 (19%), Positives = 53/152 (34%), Gaps = 24/152 (15%)

Query: 38  LTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSL 97
           L  +++  N + E+      PRL+ L    N L ++P+      ++LK L +  +    L
Sbjct: 319 LEELNVSNNKLIELPALP--PRLERLIASFNHLAEVPE----LPQNLKQLHVEYN---PL 369

Query: 98  FSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLR 157
              P     + +LR  S           +      L+ L +  + + E P     +  LR
Sbjct: 370 REFPDIPESVEDLRMNSHL-------AEVPELPQNLKQLHVETNPLREFPDIPESVEDLR 422

Query: 158 LLD--LTDCYNLELIPRGVLSRLRKLEELYMS 187
           +    + D Y              KLE+    
Sbjct: 423 MNSERVVDPYEFA------HETTDKLEDDVFE 448

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.0 bits (107), Expect = 5e-05
 Identities = 24/152 (15%), Positives = 43/152 (28%), Gaps = 27/152 (17%)

Query: 60  LQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQ 119
           LQ      ++L ++P      +K         S      + P        +    L DC 
Sbjct: 13  LQEPLRHSSNLTEMPVEAEN-VKSKTEYYNAWS--EWERNAPPGNGEQREMAVSRLRDCL 69

Query: 120 HFG----DLS------LIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLT------- 162
                  +L+      L      LE L  S + ++E+P     L  L + +         
Sbjct: 70  DRQAHELELNNLGLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDL 129

Query: 163 -------DCYNLELIPRGVLSRLRKLEELYMS 187
                     N +L     L     L+ + + 
Sbjct: 130 PPLLEYLGVSNNQLEKLPELQNSSFLKIIDVD 161

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 56.4 bits (136), Expect = 8e-09
 Identities = 29/132 (21%), Positives = 52/132 (39%), Gaps = 9/132 (6%)

Query: 58  PRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSF--LINLRTLSL 115
           P L+ L + +   L+      +    L  LDL  +       L S+L       L+ L+L
Sbjct: 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLAL 208

Query: 116 HDCQH----FGDLSLIGELSLLEILDLSESDVSEIP--VSFGRLGHLRLLDLTDCYNLEL 169
            +           +L      L+ LDLS + + +     S      L  L+L+    L+ 
Sbjct: 209 RNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT-GLKQ 267

Query: 170 IPRGVLSRLRKL 181
           +P+G+ ++L  L
Sbjct: 268 VPKGLPAKLSVL 279

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 31/212 (14%), Positives = 67/212 (31%), Gaps = 20/212 (9%)

Query: 22  AGVELKDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDP---FF 78
              +++ +    + E L        D+ +  + ++   L+ L ++   +           
Sbjct: 32  GAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRV 91

Query: 79  QGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELS-----LL 133
            G+  L+ L L    V      P   +   +L  L+L +       + + EL       L
Sbjct: 92  LGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGL 151

Query: 134 EILDLSESDVSEIPVS-FGRLGHLRLLDLTD---CYNLELIPRGVLSRLRKLEELYMSKT 189
           ++L ++++               L  LDL+D        LI      +   L+ L +   
Sbjct: 152 KVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRN- 210

Query: 190 FCHWQFENEDDSRSNAKFIELGALSRLTSLHI 221
                     ++ S        A  +L  L +
Sbjct: 211 -------AGMETPSGVCSALAAARVQLQGLDL 235

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 57.0 bits (138), Expect = 9e-09
 Identities = 30/192 (15%), Positives = 63/192 (32%), Gaps = 29/192 (15%)

Query: 31  SINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLG 90
           S      LT +    + I ++    +   L  L    N++  +         +L  L   
Sbjct: 37  SEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACD 93

Query: 91  GSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSF 150
            + + +L      ++ L  L  L+    +    L  + +  LL  L+ + + ++EI VS 
Sbjct: 94  SNKLTNL-----DVTPLTKLTYLNCDTNK-LTKLD-VSQNPLLTYLNCARNTLTEIDVS- 145

Query: 151 GRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIEL 210
                L  LD      +  +    ++   +L  L  S      +             +++
Sbjct: 146 -HNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCS----FNKITE----------LDV 187

Query: 211 GALSRLTSLHID 222
                L  L+ D
Sbjct: 188 SQNKLLNRLNCD 199

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 57.0 bits (138), Expect = 1e-08
 Identities = 31/197 (15%), Positives = 60/197 (30%), Gaps = 30/197 (15%)

Query: 26  LKDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLK 85
                 +     LT +   FN I E+    Q   L  L    N++  +          L 
Sbjct: 160 KITKLDVTPQTQLTTLDCSFNKITELDVS-QNKLLNRLNCDTNNITKLD---LNQNIQLT 215

Query: 86  VLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVSE 145
            LD   +    L  +   ++ L  L            +L  +  LS L  L   ++D+ E
Sbjct: 216 FLDCSSN---KLTEID--VTPLTQLTYFDCSVNP-LTELD-VSTLSKLTTLHCIQTDLLE 268

Query: 146 IPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNA 205
           I ++      L       C  ++ +    ++   +L  L                     
Sbjct: 269 IDLT--HNTQLIYFQAEGCRKIKELD---VTHNTQLYLLDCQAA----GITE-------- 311

Query: 206 KFIELGALSRLTSLHID 222
             ++L    +L  L+++
Sbjct: 312 --LDLSQNPKLVYLYLN 326

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 28/167 (16%), Positives = 59/167 (35%), Gaps = 22/167 (13%)

Query: 101 PSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLD 160
             S   L  L +L  H+     D++ I +L+ L  L  + ++++ + +S  +  +L  L 
Sbjct: 35  TISEEQLATLTSLDCHNSS-ITDMTGIEKLTGLTKLICTSNNITTLDLS--QNTNLTYLA 91

Query: 161 LTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNA-----------KFIE 209
                 L  +    ++ L KL  L         +    D S++               I+
Sbjct: 92  CDSN-KLTNLD---VTPLTKLTYLNCDTN----KLTKLDVSQNPLLTYLNCARNTLTEID 143

Query: 210 LGALSRLTSLHIDIPEGEIMPSDMSFQNLTSFSITIGGPEEVPLSDF 256
           +   ++LT L   + +            LT+   +     E+ +S  
Sbjct: 144 VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQN 190

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 22/115 (19%), Positives = 39/115 (33%), Gaps = 14/115 (12%)

Query: 56  QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSL 115
              +L  L  Q   + ++          L  L L  +    L  L   +S    L++LS 
Sbjct: 295 HNTQLYLLDCQAAGITELD---LSQNPKLVYLYLNNT---ELTELD--VSHNTKLKSLSC 346

Query: 116 HDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELI 170
            +     D S +G++  L     +E     +P        L    LT   + +L+
Sbjct: 347 VNAH-IQDFSSVGKIPALNNNFEAEGQTITMPKET-----LTNNSLTIAVSPDLL 395

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 55.3 bits (133), Expect = 2e-08
 Identities = 44/174 (25%), Positives = 72/174 (41%), Gaps = 18/174 (10%)

Query: 56  QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSL 115
           QC +LQ L L+   L D          +L  L+L G   FS F+L + LS    L  L+L
Sbjct: 116 QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNL 175

Query: 116 HDCQHFGDLSLIGELS----LLEILDLSE--SDVSEIPVS--FGRLGHLRLLDLTDCYNL 167
             C  F +  +   ++     +  L+LS    ++ +  +S    R  +L  LDL+D   L
Sbjct: 176 SWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVML 235

Query: 168 ELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHI 221
           +        +L  L+ L +S   C+               +ELG +  L +L +
Sbjct: 236 KNDCFQEFFQLNYLQHLSLS--RCY--------DIIPETLLELGEIPTLKTLQV 279

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 44.5 bits (105), Expect = 6e-05
 Identities = 22/118 (18%), Positives = 37/118 (31%), Gaps = 12/118 (10%)

Query: 57  CPRLQALFLQKNDLLD---IPDPFFQGMKDLKVLDLGG-SGVFSLFSLPSSLSFLINLRT 112
           C RL  L L          +        + +  L+L G         L + +    NL  
Sbjct: 167 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 226

Query: 113 LSLHDCQHFGDLSL--IGELSLLEILDLSE----SDVSEIPVSFGRLGHLRLLDLTDC 164
           L L D     +       +L+ L+ L LS        +   +  G +  L+ L +   
Sbjct: 227 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET--LLELGEIPTLKTLQVFGI 282

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 46/169 (27%), Positives = 69/169 (40%), Gaps = 30/169 (17%)

Query: 61  QALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSL-SFLINLRTLSLHDCQ 119
           + L LQ   L  + D  F+G+  L  L+L  +    L +L + +   L  L TL L + Q
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYN---QLQTLSAGVFDDLTELGTLGLANNQ 94

Query: 120 HFGDLSL----IGELSLLEILDLSESDVSEIPVS-FGRLGHLRLLDLTDCYN-LELIPRG 173
                SL       L+ L+ L L  + +  +P   F RL  L+ L L    N L+ IP G
Sbjct: 95  L---ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL--NTNQLQSIPAG 149

Query: 174 VLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSL-HI 221
              +L  L+ L +              S +  + +  GA  RL  L  I
Sbjct: 150 AFDKLTNLQTLSL--------------STNQLQSVPHGAFDRLGKLQTI 184

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 38/135 (28%), Positives = 58/135 (42%), Gaps = 17/135 (12%)

Query: 59  RLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSF--LINLRTLSLH 116
           +L  L L  N L  +    F  + +L  L L  +    L SLP  + F  L  L  L L 
Sbjct: 60  KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN---QLASLPLGV-FDHLTQLDKLYLG 115

Query: 117 DCQHFGDLSLIGE-----LSLLEILDLSESDVSEIPVS-FGRLGHLRLLDLTDCYNLELI 170
             Q    L  +       L+ L+ L L+ + +  IP   F +L +L+ L L+    L+ +
Sbjct: 116 GNQ----LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLST-NQLQSV 170

Query: 171 PRGVLSRLRKLEELY 185
           P G   RL KL+ + 
Sbjct: 171 PHGAFDRLGKLQTIT 185

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 55.3 bits (133), Expect = 4e-08
 Identities = 30/157 (19%), Positives = 49/157 (31%), Gaps = 16/157 (10%)

Query: 38  LTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSL 97
           L  +S+  N +  +        L  L+   N L  +P         LK L + G+    L
Sbjct: 183 LQELSVSDNQLASLPTLP--SELYKLWAYNNRLTSLPA----LPSGLKELIVSGN---RL 233

Query: 98  FSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLR 157
            SLP   S    L+ L +   +     SL    S L  L +  + ++ +P S   L    
Sbjct: 234 TSLPVLPS---ELKELMVSGNRL---TSLPMLPSGLLSLSVYRNQLTRLPESLIHLSSET 287

Query: 158 LLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQ 194
            ++L     L       L  +                
Sbjct: 288 TVNLEGN-PLSERTLQALREITSAPGYSGPIIRFDMA 323

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 54.9 bits (132), Expect = 5e-08
 Identities = 29/164 (17%), Positives = 58/164 (35%), Gaps = 30/164 (18%)

Query: 38  LTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSL 97
              +++  + +  + + L    +  L +  N+L  +P    +    L+ L++ G+    L
Sbjct: 42  NAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPALPPE----LRTLEVSGN---QL 93

Query: 98  FSLPSSLSFLINLRTLSLHDCQ------HFGDLSLIG--------ELSLLEILDLSESDV 143
            SLP     L+ L   S               L + G            L+ L +S++ +
Sbjct: 94  TSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQL 153

Query: 144 SEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMS 187
           + +P     L  L   +      L  +P         L+EL +S
Sbjct: 154 ASLPALPSELCKLWAYNN----QLTSLP----MLPSGLQELSVS 189

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 51.4 bits (123), Expect = 6e-07
 Identities = 36/196 (18%), Positives = 63/196 (32%), Gaps = 41/196 (20%)

Query: 10  QQIASKNKFLIKAGVELKDWPSINTFEDLTGISLMFNDIHEVHEGL-QCPRLQALFLQKN 68
             + +    L+     L   P+     +L  + +  N +  +         L        
Sbjct: 57  DCLPAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLT 114

Query: 69  DLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQ------HFG 122
            L  +P         L  L + G+    L SLP        L+ LS+ D Q         
Sbjct: 115 HLPALPS-------GLCKLWIFGN---QLTSLPVLPP---GLQELSVSDNQLASLPALPS 161

Query: 123 DL-----------SLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIP 171
           +L           SL    S L+ L +S++ ++ +P     L  L   +      L  +P
Sbjct: 162 ELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTLPSELYKLWAYNN----RLTSLP 217

Query: 172 RGVLSRLRKLEELYMS 187
               +    L+EL +S
Sbjct: 218 ----ALPSGLKELIVS 229

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 48.7 bits (116), Expect = 4e-06
 Identities = 60/329 (18%), Positives = 102/329 (31%), Gaps = 97/329 (29%)

Query: 84  LKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDV 143
             VL++G SG   L +LP  L    ++ TL + D       SL      L  L++S + +
Sbjct: 42  NAVLNVGESG---LTTLPDCL--PAHITTLVIPDNNL---TSLPALPPELRTLEVSGNQL 93

Query: 144 SEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRS 203
           + +PV    L  L +       +L  +P G       L +L++       Q  +      
Sbjct: 94  TSLPVLPPGLLELSIFSNPLT-HLPALPSG-------LCKLWIF----GNQLTSLPVL-- 139

Query: 204 NAKFIELGALSRLTSLHIDIPEGEIMPSDMSFQNLTSFSITIGGPEEVPLSDFIEVFSRK 263
                       L  L             +S   L S         ++            
Sbjct: 140 ---------PPGLQEL------------SVSDNQLASLPALPSELCKLWAY--------- 169

Query: 264 FKKRCSRAMGLSQDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFL 323
                        + ++++LP     L    + L++ D N L ++ +  +      L  L
Sbjct: 170 -------------NNQLTSLPMLPSGL----QELSVSD-NQLASLPTLPSE-----LYKL 206

Query: 324 AIVGCNEMKYLLNSLERTLRVTLLKLEWLMIVDNRNFVEICHGQLPAGCLSNVKRLDVRD 383
                    +  N+   +L      L+ L++  NR         LP    S +K L V  
Sbjct: 207 ---------WAYNNRLTSLPALPSGLKELIVSGNR------LTSLPVL-PSELKELMVSG 250

Query: 384 CGSVLKILPSHLVQSFQNLQRLRVEGCEL 412
               L  LP         L  L V   +L
Sbjct: 251 NR--LTSLPMLP----SGLLSLSVYRNQL 273

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 48.0 bits (114), Expect = 8e-06
 Identities = 28/146 (19%), Positives = 49/146 (33%), Gaps = 30/146 (20%)

Query: 57  CPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLH 116
                 L + ++ L  +PD        +  L +  +   +L SLP+       LRTL + 
Sbjct: 39  NNGNAVLNVGESGLTTLPDCLP---AHITTLVIPDN---NLTSLPALPP---ELRTLEVS 89

Query: 117 DCQHFGDL-SLIGELSLLEILDLSESDVSEIPVSFGRL--------------GHLRLLDL 161
             Q    L  L   L  L I     + +  +P    +L                L+ L +
Sbjct: 90  GNQ-LTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSV 148

Query: 162 TDCYNLELIPRGVLSRLRKLEELYMS 187
           +D   L  +P        +L +L+  
Sbjct: 149 SDN-QLASLPAL----PSELCKLWAY 169

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 54.2 bits (130), Expect = 9e-08
 Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 5/136 (3%)

Query: 57  CPRLQALFLQKNDLLDIPDP----FFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRT 112
              L+ L     +   I         +  + L  + +G   +  L     + + L     
Sbjct: 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCG 250

Query: 113 LSLHDCQHFGDLSL-IGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIP 171
            SL++     +  + +     L  L LS    +E+P+ F     +R LDL          
Sbjct: 251 GSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDH 310

Query: 172 RGVLSRLRKLEELYMS 187
             ++ +   LE L   
Sbjct: 311 CTLIQKCPNLEVLETR 326

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 46.1 bits (109), Expect = 3e-05
 Identities = 37/234 (15%), Positives = 76/234 (32%), Gaps = 23/234 (9%)

Query: 24  VELKDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLD--IPDPFFQGM 81
           ++LK  P    F  +      +             +L+++  ++  + D  +        
Sbjct: 78  LKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARA 137

Query: 82  KDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGD----LSLIGE-LSLLEIL 136
            DL+ L L     F+   L S ++    ++TL + +          L  + +  + LE+L
Sbjct: 138 DDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVL 197

Query: 137 DLSESDVSEIPVS-----FGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFC 191
           +   ++ ++I              L  + + D   LEL+  G       LEE        
Sbjct: 198 NFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV--GFFKAAANLEEFCGGSL-- 253

Query: 192 HWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSDMSF-QNLTSFSIT 244
                  +D     K++ L    +L  L +       MP    F   +    + 
Sbjct: 254 ------NEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLL 301

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 44.9 bits (106), Expect = 7e-05
 Identities = 76/487 (15%), Positives = 155/487 (31%), Gaps = 83/487 (17%)

Query: 99  SLPSSLSFLINLRTLSLHDCQHFGDLSLIGE----------------LSLLEILDLSE-- 140
           +         NLR+L L         +LI E                L  L+ +      
Sbjct: 64  TPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMI 123

Query: 141 -SDVSEIPVSFGRLGHLRLLDLTDCYNL-ELIPRGVLSRLRKLEELYMSKTFCHWQFENE 198
            SD+    ++  R   L  L L  C          +++  RK++ L M ++        E
Sbjct: 124 VSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFS-----E 178

Query: 199 DDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSDMSFQNLTSFSITIGGPEEVPLSDFIE 258
            D +   +  +    + L  L+  + E     + +S ++L + +        V + DF  
Sbjct: 179 KDGKWLHELAQH--NTSLEVLNFYMTEF----AKISPKDLETIARNCRSLVSVKVGDFEI 232

Query: 259 VFSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFN 318
           +    F K  +                     L      +L +   +     +L      
Sbjct: 233 LELVGFFKAAAN--------------------LEEFCGGSLNEDIGMPEKYMNLVFPRKL 272

Query: 319 ELMFLAIVGCNEMKYLLNSLERTLRVTLLKLEWLMIVDNRNFVEICHGQLPAGCLSNVKR 378
             + L+ +G NEM  L        ++  L L + ++    +   I           N++ 
Sbjct: 273 CRLGLSYMGPNEMPILFPFAA---QIRKLDLLYALLETEDHCTLIQK-------CPNLEV 322

Query: 379 LDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEIER-------VNIAKEETEL 431
           L+ R+      +    L Q  + L+RLR+E       + + E        + +A    + 
Sbjct: 323 LETRNVIGDRGL--EVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALA----QG 376

Query: 432 FSSLEKLTLIGLPRMTDIWKGDTQFVS-LHDLKKIRVVFCDELRQVFPANLGKKAAAEEM 490
              LE + +     +T+  +      + L +L   R+V  D   ++    L     +  +
Sbjct: 377 CQELEYMAVYV-SDITN--ESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLI 433

Query: 491 VLYRNRRDQIHIHATTSTSSPTPSLG----NLVSITIRGCGKLRNLFTTSMVKSLVRLES 546
              + RR   ++     T      +G    N+  + +   G   +       +    L+ 
Sbjct: 434 GCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQK 492

Query: 547 LEVSRCP 553
           LE+  C 
Sbjct: 493 LEMRGCC 499

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 41.5 bits (97), Expect = 8e-04
 Identities = 27/155 (17%), Positives = 49/155 (31%), Gaps = 26/155 (16%)

Query: 57  CPRLQALFLQKNDLL-DIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSL 115
             +++ L L    L  +      Q   +L+VL+     V     L     +   L+ L +
Sbjct: 292 AAQIRKLDLLYALLETEDHCTLIQKCPNLEVLET--RNVIGDRGLEVLAQYCKQLKRLRI 349

Query: 116 HDCQHFGDL----SLIGELSL---------LEILDLSESDVS-----EIPVSFGRLGHLR 157
                   +     L+ +  L         LE + +  SD++      I      L   R
Sbjct: 350 ERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFR 409

Query: 158 LLDLTDCYNLELIP-----RGVLSRLRKLEELYMS 187
           L+ L     +  +P     R +L   +KL      
Sbjct: 410 LVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFY 444

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 29/155 (18%), Positives = 54/155 (34%), Gaps = 34/155 (21%)

Query: 37  DLTGISLMFNDIHEVHEG---LQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSG 93
               + L  N+   +       + P+L+ +    N + DI +  F+G   +  + L  + 
Sbjct: 33  YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN- 91

Query: 94  VFSLFSLPSSLSF--LINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVSEIPV-SF 150
              L ++   + F  L +L+TL L   +                       ++ +   SF
Sbjct: 92  --RLENVQHKM-FKGLESLKTLMLRSNR-----------------------ITCVGNDSF 125

Query: 151 GRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELY 185
             L  +RLL L D   +  +  G    L  L  L 
Sbjct: 126 IGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLN 159

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 32/154 (20%), Positives = 57/154 (37%), Gaps = 30/154 (19%)

Query: 96  SLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIG---ELSLLEILDLSESDVSEIPV-SFG 151
            L  +P  +        L L++ + F  L   G   +L  L  ++ S + +++I   +F 
Sbjct: 22  KLNKIPEHIP--QYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFE 78

Query: 152 RLGHLRLLDLTDCYN-LELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIEL 210
               +  + LT   N LE +   +   L  L+ L +          N      N  FI L
Sbjct: 79  GASGVNEILLT--SNRLENVQHKMFKGLESLKTLMLR--------SNRITCVGNDSFIGL 128

Query: 211 GALSRLTSLHID----IPEGEIMPSDMSFQNLTS 240
            ++  L SL+ +    +  G       +F  L S
Sbjct: 129 SSVRLL-SLYDNQITTVAPG-------AFDTLHS 154

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 52.8 bits (126), Expect = 2e-07
 Identities = 20/123 (16%), Positives = 48/123 (39%), Gaps = 7/123 (5%)

Query: 27  KDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKV 86
           ++      + D+  + L   D+  +    Q   +  L L  N L  +P P    ++ L+V
Sbjct: 432 ENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALP-PALAALRCLEV 490

Query: 87  LDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQ--HFGDLSLIGELSLLEILDLSESDVS 144
           L    + + ++      ++ L  L+ L L + +      +  +     L +L+L  + + 
Sbjct: 491 LQASDNALENV----DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

Query: 145 EIP 147
           +  
Sbjct: 547 QEE 549

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 48.2 bits (114), Expect = 6e-06
 Identities = 26/127 (20%), Positives = 48/127 (37%), Gaps = 14/127 (11%)

Query: 95  FSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLG 154
             L           ++R L L        L  + +L L+  LDLS + +  +P +   L 
Sbjct: 428 KFLLENSVLKMEYADVRVLHLAHKDL-TVLCHLEQLLLVTHLDLSHNRLRALPPALAALR 486

Query: 155 HLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALS 214
            L +L  +D   LE +    ++ L +L+EL +       + +             L +  
Sbjct: 487 CLEVLQASDN-ALENVD--GVANLPRLQELLLCNN----RLQQSAA------IQPLVSCP 533

Query: 215 RLTSLHI 221
           RL  L++
Sbjct: 534 RLVLLNL 540

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 50/187 (26%), Positives = 81/187 (43%), Gaps = 21/187 (11%)

Query: 9   AQQIASKNKFLIKAGVELKDWPSINTFEDLTGISLMFNDIHE--VHEGLQCPRLQALFLQ 66
            Q   +    +I    ++K    I    ++  ++L  N +H+    + L    L  L L 
Sbjct: 36  TQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKEL--TNLTYLILT 93

Query: 67  KNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSL-SFLINLRTLSLHDCQHFGDLS 125
            N L  +P+  F  + +LK L L  +    L SLP  +   L NL  L+L   Q    L 
Sbjct: 94  GNQLQSLPNGVFDKLTNLKELVLVEN---QLQSLPDGVFDKLTNLTYLNLAHNQ----LQ 146

Query: 126 LIGE-----LSLLEILDLSESDVSEIPVS-FGRLGHLRLLDLTDCYN-LELIPRGVLSRL 178
            + +     L+ L  LDLS + +  +P   F +L  L+ L L    N L+ +P GV  RL
Sbjct: 147 SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQ--NQLKSVPDGVFDRL 204

Query: 179 RKLEELY 185
             L+ ++
Sbjct: 205 TSLQYIW 211

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 49/169 (28%), Positives = 79/169 (46%), Gaps = 17/169 (10%)

Query: 26  LKDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLK 85
           + D  + N    +  I    +DI  V      P ++ L L  N L DI     + + +L 
Sbjct: 31  VTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS--ALKELTNLT 88

Query: 86  VLDLGGSGVFSLFSLPSSL-SFLINLRTLSLHDCQHFGDLSL----IGELSLLEILDLSE 140
            L L G+    L SLP+ +   L NL+ L L + Q     SL      +L+ L  L+L+ 
Sbjct: 89  YLILTGN---QLQSLPNGVFDKLTNLKELVLVENQL---QSLPDGVFDKLTNLTYLNLAH 142

Query: 141 SDVSEIPVS-FGRLGHLRLLDLTDCYN-LELIPRGVLSRLRKLEELYMS 187
           + +  +P   F +L +L  LDL   YN L+ +P GV  +L +L++L + 
Sbjct: 143 NQLQSLPKGVFDKLTNLTELDL--SYNQLQSLPEGVFDKLTQLKDLRLY 189

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 3/86 (3%)

Query: 34  TFEDLTGISLMFNDIHEVHEGLQ-CPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGS 92
            F +L  +SL+   +  V   L   P+L+ L L +N +    D   + + +L  L+L G+
Sbjct: 47  EFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN 105

Query: 93  GVFSLFSLPSSLSFLINLRTLSLHDC 118
            +  + +L   L  L  L++L L +C
Sbjct: 106 KLKDISTL-EPLKKLECLKSLDLFNC 130

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 40/132 (30%), Positives = 55/132 (41%), Gaps = 16/132 (12%)

Query: 61  QALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSF--LINLRTLSLHDC 118
           Q L+L  N +  +    F  + +LK L LG +    L +LP  + F  L  L  L L   
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQ---LGALPVGV-FDSLTQLTVLDLGTN 98

Query: 119 QHFGDL-SL----IGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRG 173
           Q    L  L       L  L+ L +  + ++E+P    RL HL  L L     L+ IP G
Sbjct: 99  Q----LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQ-NQLKSIPHG 153

Query: 174 VLSRLRKLEELY 185
              RL  L   Y
Sbjct: 154 AFDRLSSLTHAY 165

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 50.4 bits (121), Expect = 4e-07
 Identities = 40/153 (26%), Positives = 67/153 (43%), Gaps = 29/153 (18%)

Query: 36  EDLTGISLMFNDIHEVHEGL--QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSG 93
           E +T I L  N I  +  G      +L+ + L  N + ++    FQG++ L  L L G+ 
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN- 90

Query: 94  VFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVSEIPV-SFGR 152
              +  LP SL                F        L  L++L L+ + ++ + V +F  
Sbjct: 91  --KITELPKSL----------------FEG------LFSLQLLLLNANKINCLRVDAFQD 126

Query: 153 LGHLRLLDLTDCYNLELIPRGVLSRLRKLEELY 185
           L +L LL L D   L+ I +G  S LR ++ ++
Sbjct: 127 LHNLNLLSLYD-NKLQTIAKGTFSPLRAIQTMH 158

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 12/101 (11%)

Query: 130 LSLLEILDLSESDVSEIPV-SFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSK 188
              L  +DLS + +SE+   +F  L  L  L L     +  +P+ +   L  L+ L ++ 
Sbjct: 55  YKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-KITELPKSLFEGLFSLQLLLLNA 113

Query: 189 ---------TFCHWQFENEDDSRSNA-KFIELGALSRLTSL 219
                     F      N      N  + I  G  S L ++
Sbjct: 114 NKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAI 154

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 47.7 bits (114), Expect = 9e-07
 Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 3/88 (3%)

Query: 32  INTFEDLTGISLMFNDIHEVHEGLQ-CPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLG 90
            + FE+L  +S +   +  +   L    +L+ L L  N +    +   +   +L  L+L 
Sbjct: 38  TDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS 96

Query: 91  GSGVFSLFSLPSSLSFLINLRTLSLHDC 118
           G+ +  L ++   L  L NL++L L +C
Sbjct: 97  GNKIKDLSTI-EPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.0 bits (94), Expect = 5e-04
 Identities = 35/148 (23%), Positives = 56/148 (37%), Gaps = 12/148 (8%)

Query: 44  MFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDP-FFQGMKDLKVLDLGGSGVFSLFSLPS 102
           M   IH          ++ L L  +   +          ++L+ L     G+ S+    +
Sbjct: 3   MGRRIHLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI----A 58

Query: 103 SLSFLINLRTLSLHDCQ-HFGDLSLIGELSLLEILDLSE---SDVSEIPVSFGRLGHLRL 158
           +L  L  L+ L L D +   G   L  +   L  L+LS     D+S I     +L +L+ 
Sbjct: 59  NLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTI-EPLKKLENLKS 117

Query: 159 LDLTD--CYNLELIPRGVLSRLRKLEEL 184
           LDL +    NL      V   L +L  L
Sbjct: 118 LDLFNCEVTNLNDYRENVFKLLPQLTYL 145

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 50.7 bits (121), Expect = 1e-06
 Identities = 26/181 (14%), Positives = 52/181 (28%), Gaps = 29/181 (16%)

Query: 38  LTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSL 97
           L  I+   N +  + E      L+ L ++ N L  +P+      + L+ LD+  +    L
Sbjct: 142 LEYINADNNQLTMLPELPT--SLEVLSVRNNQLTFLPE----LPESLEALDVSTNL---L 192

Query: 98  FSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLR 157
            SLP+      +                              E+ ++ IP +   L    
Sbjct: 193 ESLPAVPVRNHHSEET-------------------EIFFRCRENRITHIPENILSLDPTC 233

Query: 158 LLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLT 217
            + L D   L    R  LS+     + +  + +       ++                  
Sbjct: 234 TIILED-NPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENK 292

Query: 218 S 218
            
Sbjct: 293 Q 293

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 42.3 bits (99), Expect = 4e-04
 Identities = 19/122 (15%), Positives = 39/122 (31%), Gaps = 15/122 (12%)

Query: 68  NDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLI 127
           N +      +F      +   L G       SL      +     L L+       LS +
Sbjct: 20  NTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKE-CLINQFSELQLNRLN----LSSL 74

Query: 128 GE--LSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELY 185
            +     + +L+++++ +  +P     L +L   D      L  +P         L+ L 
Sbjct: 75  PDNLPPQITVLEITQNALISLPELPASLEYLDACDN----RLSTLP----ELPASLKHLD 126

Query: 186 MS 187
           + 
Sbjct: 127 VD 128

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 41.9 bits (98), Expect = 6e-04
 Identities = 23/130 (17%), Positives = 43/130 (33%), Gaps = 20/130 (15%)

Query: 59  RLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDC 118
           +       +N+ + +       +     L L       L SLP +L     +  L +   
Sbjct: 38  KQALPGENRNEAVSLLKECL--INQFSELQLNRLN---LSSLPDNL--PPQITVLEITQN 90

Query: 119 QHFGDLSLI-GELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSR 177
                L  +    + LE LD  ++ +S +P     L HL + +      L ++P      
Sbjct: 91  A----LISLPELPASLEYLDACDNRLSTLPELPASLKHLDVDNN----QLTMLPEL---- 138

Query: 178 LRKLEELYMS 187
              LE +   
Sbjct: 139 PALLEYINAD 148

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.4 bits (117), Expect = 2e-06
 Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 5/95 (5%)

Query: 96  SLFSLPSSLSFLINLRTLSLHDCQHFGDL--SLIGELSLLEILDLSESDVSEIPV-SFGR 152
                   L    NL  L + + QH   L    +  L  L  L + +S +  +   +F  
Sbjct: 19  GALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHF 78

Query: 153 LGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMS 187
              L  L+L+    LE +    +  L  L+EL +S
Sbjct: 79  TPRLSRLNLSFN-ALESLSWKTVQGL-SLQELVLS 111

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.3 bits (96), Expect = 7e-04
 Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 6/91 (6%)

Query: 30  PSINTFEDLTGISLMFN-DIHEVHEG--LQCPRLQALFLQKNDLLDIPDPFFQGMKDLKV 86
             +   E+LT + +     +  +          L+ L + K+ L  +    F     L  
Sbjct: 25  HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84

Query: 87  LDLGGSGVFSLFSLPSSLSFLINLRTLSLHD 117
           L+L  +   +L SL       ++L+ L L  
Sbjct: 85  LNLSFN---ALESLSWKTVQGLSLQELVLSG 112

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 46.6 bits (111), Expect = 4e-06
 Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 3/86 (3%)

Query: 34  TFEDLTGISLMFNDIHEVHEGLQC-PRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGS 92
           T +    I    N+I ++ +G     RL+ L +  N +  I +   Q + DL  L L  +
Sbjct: 40  TLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN 98

Query: 93  GVFSLFSLPSSLSFLINLRTLSLHDC 118
            +  L  L   L+ L +L  L +   
Sbjct: 99  SLVELGDL-DPLASLKSLTYLCILRN 123

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 46.6 bits (111), Expect = 6e-06
 Identities = 39/133 (29%), Positives = 63/133 (47%), Gaps = 17/133 (12%)

Query: 61  QALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSL-SFLINLRTLSLHDCQ 119
             L L+ N L  +P+  F  +  L  L LGG+    L SLP+ + + L +L  L+L   Q
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGN---KLQSLPNGVFNKLTSLTYLNLSTNQ 87

Query: 120 HFGDLSLIGE-----LSLLEILDLSESDVSEIPV-SFGRLGHLRLLDLTDCYN-LELIPR 172
               L  +       L+ L+ L L+ + +  +P   F +L  L+ L L    N L+ +P 
Sbjct: 88  ----LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ--NQLKSVPD 141

Query: 173 GVLSRLRKLEELY 185
           GV  RL  L+ ++
Sbjct: 142 GVFDRLTSLQYIW 154

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 37/157 (23%), Positives = 61/157 (38%), Gaps = 22/157 (14%)

Query: 42  SLMFNDIHEVHEGLQ-CPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSL 100
             M   I ++   L      + L L  N++  I      GM++L++L LG + +  +   
Sbjct: 31  HGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS--LSGMENLRILSLGRNLIKKI--- 85

Query: 101 PSSLSFLIN-LRTLSLHDCQHFGDLSLIGELSLLEILDLSE---SDVSEIPVSFGRLGHL 156
             +L  + + L  L +   Q    LS I +L  L +L +S    ++  EI      L  L
Sbjct: 86  -ENLDAVADTLEELWISYNQ-IASLSGIEKLVNLRVLYMSNNKITNWGEI-DKLAALDKL 142

Query: 157 RLLDLTD--CYNLELIPRG-------VLSRLRKLEEL 184
             L L     YN              V+ RL  L++L
Sbjct: 143 EDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 37/178 (20%), Positives = 70/178 (39%), Gaps = 17/178 (9%)

Query: 48  IHEVHEGLQCPRLQ--ALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLS 105
           I E  + +     +   L      +  + D     +K  K L L  + +  +    SSLS
Sbjct: 13  IFEERKSVVATEAEKVELHGMIPPIEKM-DATLSTLKACKHLALSTNNIEKI----SSLS 67

Query: 106 FLINLRTLSLHDCQHFGDLSLIGELS----LLEILDLSESDVSEIPVSFGRLGHLRLLDL 161
            + NLR LSL        +  I  L      LE L +S + ++ +     +L +LR+L +
Sbjct: 68  GMENLRILSLGRNL----IKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYM 122

Query: 162 TDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSL 219
           ++           L+ L KLE+L ++    +  ++  + +      + +  L  L  L
Sbjct: 123 SNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEV-VKRLPNLKKL 179

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 45.7 bits (108), Expect = 4e-05
 Identities = 45/233 (19%), Positives = 76/233 (32%), Gaps = 18/233 (7%)

Query: 24  VELKDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIP-DPFFQGMK 82
           VELK  P    F  +      +              L+ + L++  + D   +   +  K
Sbjct: 71  VELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFK 130

Query: 83  DLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGD-----LSLIGELSLLEILD 137
           + KVL L     FS   L +  +   NL+ L L +                  + L  L+
Sbjct: 131 NFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLN 190

Query: 138 LS--ESDVSEIPVSF--GRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHW 193
           +S   S+VS   +     R  +L+ L L     LE +   +L R  +LEEL         
Sbjct: 191 ISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKL-ATLLQRAPQLEELGTG-----G 244

Query: 194 QFENEDDSRSNAKFIELGALSRLTSLHI--DIPEGEIMPSDMSFQNLTSFSIT 244
                     +   + L     L  L    D     +         LT+ +++
Sbjct: 245 YTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLS 297

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.9 bits (105), Expect = 5e-05
 Identities = 26/155 (16%), Positives = 53/155 (34%), Gaps = 21/155 (13%)

Query: 30  PSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLD--IPDPFFQGMKDLKVL 87
           P ++    L  + +   +   +      P L++L +    L D  + D     + +L+ L
Sbjct: 166 PVLDAMPLLNNLKIKGTNNLSI-GKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKL 224

Query: 88  DL--------GGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGD----LSLIGELSLLEI 135
            L            +     L S   F  NL+ L + D +              L  LE 
Sbjct: 225 VLYVGVEDYGFDGDMNVFRPLFSKDRFP-NLKWLGIVDAEEQNVVVEMFLESDILPQLET 283

Query: 136 LDLS-----ESDVSEIPVSFGRLGHLRLLDLTDCY 165
           +D+S     +     +     ++ HL+ +++   Y
Sbjct: 284 MDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 22/125 (17%), Positives = 49/125 (39%), Gaps = 14/125 (11%)

Query: 69  DLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSL-- 126
           D   +P       K ++ +D   S + S+      +  L  +  + L  C +  D  L  
Sbjct: 49  DYNHLPTGPLDKYK-IQAIDATDSCIMSIGF--DHMEGLQYVEKIRLCKCHYIEDGCLER 105

Query: 127 IGELS----LLEILDLSE-SDVSEIPV-SFGRLGHLRLLDLTDCYNL---ELIPRGVLSR 177
           + +L      +  +++    +V++  + +     +L+ L L+D   +   E I +   + 
Sbjct: 106 LSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTS 165

Query: 178 LRKLE 182
           L  LE
Sbjct: 166 LPSLE 170

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	623
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.98
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.98
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.97
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.97
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.97
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.97
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.97
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.96
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.95
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.95
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.95
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.95
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.95
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.95
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.95
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.94
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.94
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.94
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.93
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.93
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.93
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.93
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.92
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.91
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.9
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.89
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.89
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.89
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.88
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.88
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.88
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.86
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.86
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.86
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.85
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.85
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.85
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.84
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.84
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.84
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.84
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.84
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.83
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.83
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.83
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.83
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.82
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.81
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.81
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.81
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.8
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.8
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.79
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.79
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.79
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.79
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.77
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.77
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.76
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.75
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.75
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.74
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.74
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.74
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.73
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.73
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.73
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.72
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.7
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.7
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.7
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.66
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.66
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.65
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.65
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.65
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.64
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.64
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.64
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.64
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.64
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.64
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.62
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.62
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.62
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.62
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.61
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.61
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.61
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.61
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.6
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.59
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.59
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.57
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.55
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.55
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.52
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.52
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.52
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.52
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.5
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.48
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.48
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.4
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.4
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.4
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.4
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.4
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.38
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.37
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.36
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.35
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.35
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.29
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.27
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.25
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.23
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.19
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.16
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.14
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.11
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.08
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.03
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.88
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.84
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.82
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.81
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.76
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.76
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.72
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.68
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.63
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.51
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.4
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.4
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.38
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.2
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.05
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.99
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.94
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.74
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.59
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.5
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.41
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.15
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	94.76
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	94.63

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=8.6e-40  Score=362.82  Aligned_cols=531  Identities=18%  Similarity=0.115  Sum_probs=351.6

Q ss_pred             CCCCCCCCcEEEcccCCcc-cccc--cC-CCCCcceEEccCCCCC-CCChhhHhCCCcccEEEccCCcccccCCCchh--
Q 036269           31 SINTFEDLTGISLMFNDIH-EVHE--GL-QCPRLQALFLQKNDLL-DIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSS--  103 (623)
Q Consensus        31 ~~~~~~~l~~L~l~~~~~~-~l~~--~~-~~~~L~~L~l~~~~~~-~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~--  103 (623)
                      .+..+++|++|++++|.+. .+|.  .+ .+++|++|++++|.+. ..+..++.++++|++|++++|.+.  +..|..  
T Consensus        95 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~  172 (768)
T 3rgz_A           95 GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS--GANVVGWV  172 (768)
T ss_dssp             CCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCE--EETHHHHH
T ss_pred             hhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccC--CcCChhhh
Confidence            5677788999999999885 3555  44 7889999999998876 445444477888888888888885  445544  


Q ss_pred             -hhccccCcEEeccCCcCCCCcccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCc
Q 036269          104 -LSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLE  182 (623)
Q Consensus       104 -~~~l~~L~~L~l~~~~~l~~i~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~  182 (623)
                       +.++++|++|++++|. +........+++|++|++++|.+...+..++++++|++|++++|...+.+|.. +.++++|+
T Consensus       173 ~~~~l~~L~~L~Ls~n~-l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~  250 (768)
T 3rgz_A          173 LSDGCGELKHLAISGNK-ISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRA-ISTCTELK  250 (768)
T ss_dssp             HTTCCTTCCEEECCSSE-EESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHH-TTTCSSCC
T ss_pred             hhccCCCCCEEECCCCc-ccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHH-HhcCCCCC
Confidence             6677888888888887 65443447778888888888877743334788888888888885544455554 77788888


Q ss_pred             EEEecccccccccccc-----------cccccccccccccCC-CCccEEEeecCCCc-cCCCc-ccccCccEEEEEeCCC
Q 036269          183 ELYMSKTFCHWQFENE-----------DDSRSNAKFIELGAL-SRLTSLHIDIPEGE-IMPSD-MSFQNLTSFSITIGGP  248 (623)
Q Consensus       183 ~L~l~~~~~~~~~~~~-----------~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~-~~~~~-~~~~~L~~L~l~~~~~  248 (623)
                      +|++++|.+....+..           .......++..+... ++|+.|++++|.+. .+|.. ..+++|++|+++.+..
T Consensus       251 ~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l  330 (768)
T 3rgz_A          251 LLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF  330 (768)
T ss_dssp             EEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEE
T ss_pred             EEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcc
Confidence            8888777664222110           001112344444443 66666666666653 33333 5666677777666543


Q ss_pred             C-CCCcchhhhhhhhcccccccceeeeccccccccchHHHHHHHhhceeEeecccCCcccccccccccCccCccEEEEec
Q 036269          249 E-EVPLSDFIEVFSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVG  327 (623)
Q Consensus       249 ~-~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  327 (623)
                      . ..+...+       ...+.++.+.+..+...+.+|.++....++|+.|++++|.....+++.+....+++|++|++++
T Consensus       331 ~~~ip~~~l-------~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~  403 (768)
T 3rgz_A          331 SGELPMDTL-------LKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN  403 (768)
T ss_dssp             EEECCHHHH-------TTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCS
T ss_pred             cCcCCHHHH-------hcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCC
Confidence            3 1211111       1456778888887766667777777764488888888876544444444323367899999988


Q ss_pred             ccCceeecccccccccccccccceeecccCcccccccccccC--CCcCCCccEEEEeecCCcccccchhHHHhccccceE
Q 036269          328 CNEMKYLLNSLERTLRVTLLKLEWLMIVDNRNFVEICHGQLP--AGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRL  405 (623)
Q Consensus       328 ~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~--~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L  405 (623)
                      | .+......    ....+++|+.|+++++. +.    +.+|  .+.+++|+.|++++| .+++..|.. +..+++|++|
T Consensus       404 n-~l~~~~p~----~l~~l~~L~~L~Ls~N~-l~----~~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~-~~~l~~L~~L  471 (768)
T 3rgz_A          404 N-GFTGKIPP----TLSNCSELVSLHLSFNY-LS----GTIPSSLGSLSKLRDLKLWLN-MLEGEIPQE-LMYVKTLETL  471 (768)
T ss_dssp             S-EEEEECCG----GGGGCTTCCEEECCSSE-EE----SCCCGGGGGCTTCCEEECCSS-CCCSCCCGG-GGGCTTCCEE
T ss_pred             C-ccccccCH----HHhcCCCCCEEECcCCc-cc----CcccHHHhcCCCCCEEECCCC-cccCcCCHH-HcCCCCceEE
Confidence            8 44422221    45668889999999886 32    2222  246788999999885 455556665 6788899999


Q ss_pred             EEeccccceeeeeccceeccccccccccCccEEecCCccchhhcccCCCcccccCCccEEEEEcCCCcceeccCcccCcc
Q 036269          406 RVEGCELLVSVFEIERVNIAKEETELFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFCDELRQVFPANLGKKA  485 (623)
Q Consensus       406 ~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~L~~L~l~~C~~l~~~~~~~l~~~~  485 (623)
                      ++++ +.++...        |..+..+++|++|++++|.-...+   +..++.+++|++|++++| +++...|..++.++
T Consensus       472 ~L~~-N~l~~~~--------p~~l~~l~~L~~L~L~~N~l~~~~---p~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~  538 (768)
T 3rgz_A          472 ILDF-NDLTGEI--------PSGLSNCTNLNWISLSNNRLTGEI---PKWIGRLENLAILKLSNN-SFSGNIPAELGDCR  538 (768)
T ss_dssp             ECCS-SCCCSCC--------CGGGGGCTTCCEEECCSSCCCSCC---CGGGGGCTTCCEEECCSS-CCEEECCGGGGGCT
T ss_pred             EecC-CcccCcC--------CHHHhcCCCCCEEEccCCccCCcC---ChHHhcCCCCCEEECCCC-cccCcCCHHHcCCC
Confidence            9988 5555332        666778888999999888533344   455667888899999885 56656688888888


Q ss_pred             cchhhhhhccccc-ccc--------------------------------------------------------------e
Q 036269          486 AAEEMVLYRNRRD-QIH--------------------------------------------------------------I  502 (623)
Q Consensus       486 ~L~~l~~~~~~~~-~l~--------------------------------------------------------------~  502 (623)
                      +|+.|++.+|... .+.                                                              .
T Consensus       539 ~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~  618 (768)
T 3rgz_A          539 SLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR  618 (768)
T ss_dssp             TCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSC
T ss_pred             CCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccc
Confidence            8888888876431 000                                                              1


Q ss_pred             eccccCCCCCCCCCCccEEEEecCCCcceecchhhhhccCCCCEEEEccCCchh-hhhcCCCCcccCcCCCcceeecCcc
Q 036269          503 HATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSRCPTLQ-EIIMNDEGEVGLQGASTEKITFPSL  581 (623)
Q Consensus       503 ~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~-~l~~~~~~~~~~~~~~~~~~~l~~L  581 (623)
                      .+.+..|..+..+++|+.|++++|.--..+|.  .+.++++|+.|++++|. ++ .+|.             ....+++|
T Consensus       619 ~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~--~l~~l~~L~~L~Ls~N~-l~g~ip~-------------~l~~L~~L  682 (768)
T 3rgz_A          619 VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK--EIGSMPYLFILNLGHND-ISGSIPD-------------EVGDLRGL  682 (768)
T ss_dssp             EEEEECCCSCSSSBCCCEEECCSSCCBSCCCG--GGGGCTTCCEEECCSSC-CCSCCCG-------------GGGGCTTC
T ss_pred             eecccCchhhhccccccEEECcCCcccccCCH--HHhccccCCEEeCcCCc-cCCCCCh-------------HHhCCCCC
Confidence            22233455667788899999998543334433  37888999999999887 44 4443             45567777


Q ss_pred             cceecccCcccceecCCCCcceeecCCccEEEeccC
Q 036269          582 FSIQLCLLDSLTCFCSSGSHATVEFLALEALQIIDC  617 (623)
Q Consensus       582 ~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c  617 (623)
                      +.|+++++.--..++. ..   ..+++|++|+++++
T Consensus       683 ~~LdLs~N~l~g~ip~-~l---~~l~~L~~L~ls~N  714 (768)
T 3rgz_A          683 NILDLSSNKLDGRIPQ-AM---SALTMLTEIDLSNN  714 (768)
T ss_dssp             CEEECCSSCCEECCCG-GG---GGCCCCSEEECCSS
T ss_pred             CEEECCCCcccCcCCh-HH---hCCCCCCEEECcCC
Confidence            7777777654444444 22   23577777777776

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.4e-38  Score=350.14  Aligned_cols=543  Identities=16%  Similarity=0.164  Sum_probs=342.8

Q ss_pred             eecCCCCCCCCCCCCCCCCcEEEcccCCccccccc-C-CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCccccc
Q 036269           20 IKAGVELKDWPSINTFEDLTGISLMFNDIHEVHEG-L-QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSL   97 (623)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~   97 (623)
                      ...+.++..+|. ...+++++|++++|.++.+++. + ++++|++|++++|.+..+++..|.++++|++|++++|.+   
T Consensus        10 ~cs~~~L~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l---   85 (680)
T 1ziw_A           10 DCSHLKLTQVPD-DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL---   85 (680)
T ss_dssp             ECCSSCCSSCCS-CSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCC---
T ss_pred             ECCCCCcccccc-ccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCcc---
Confidence            344566777874 3348899999999999988874 3 899999999999999988777789999999999999999   


Q ss_pred             CCCch-hhhccccCcEEeccCCcCCCCc--ccccCCcCCcEEEcCCCCCccc-cccccCCCccCEEeccCCCCCCcCchh
Q 036269           98 FSLPS-SLSFLINLRTLSLHDCQHFGDL--SLIGELSLLEILDLSESDVSEI-PVSFGRLGHLRLLDLTDCYNLELIPRG  173 (623)
Q Consensus        98 ~~lp~-~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~~~~l~~~  173 (623)
                      ..+|. .+.++++|++|++++|. +..+  ..++++++|++|++++|.++.. |..++++++|++|++++| .+..++..
T Consensus        86 ~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~  163 (680)
T 1ziw_A           86 SQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN-KIQALKSE  163 (680)
T ss_dssp             CCCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSS-CCCCBCHH
T ss_pred             CccChhhhccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCC-cccccCHH
Confidence            67776 58999999999999998 8776  4689999999999999998854 567889999999999995 45556544


Q ss_pred             hhh--ccccCcEEEecccccccccccccccccc-----------------cccccccCCCCccEEEeecCCCccCCCc--
Q 036269          174 VLS--RLRKLEELYMSKTFCHWQFENEDDSRSN-----------------AKFIELGALSRLTSLHIDIPEGEIMPSD--  232 (623)
Q Consensus       174 ~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~-----------------~~~~~l~~l~~L~~L~l~~~~~~~~~~~--  232 (623)
                      .+.  .+++|+.|++++|.+....++.......                 ..+..+ ..++|+.|++++|.+...+..  
T Consensus       164 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l-~~~~L~~L~L~~n~l~~~~~~~~  242 (680)
T 1ziw_A          164 ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL-ANTSIRNLSLSNSQLSTTSNTTF  242 (680)
T ss_dssp             HHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHH-TTSCCCEEECTTSCCCEECTTTT
T ss_pred             HhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHh-hhccccEEEccCCcccccChhHh
Confidence            343  4588999999998764322211000000                 000000 124455555555554433222  


Q ss_pred             cccc--CccEEEEEeCCCCCCCcchhhhhhhhcccccccceeeeccccccccchHHHHHHHhhceeEeecccCCccc---
Q 036269          233 MSFQ--NLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEILALGDVNDLEN---  307 (623)
Q Consensus       233 ~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---  307 (623)
                      ..++  +|+.|+++++.....++..+.       ..+.++.+.+..+...+..|.++... ++|+.|++.++.....   
T Consensus       243 ~~l~~~~L~~L~Ls~n~l~~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~~~~~~~~~~  314 (680)
T 1ziw_A          243 LGLKWTNLTMLDLSYNNLNVVGNDSFA-------WLPQLEYFFLEYNNIQHLFSHSLHGL-FNVRYLNLKRSFTKQSISL  314 (680)
T ss_dssp             GGGGGSCCCEEECTTSCCCEECTTTTT-------TCTTCCEEECCSCCBSEECTTTTTTC-TTCCEEECTTCBCCC----
T ss_pred             hccCcCCCCEEECCCCCcCccCccccc-------CcccccEeeCCCCccCccChhhhcCC-CCccEEeccchhhhccccc
Confidence            2232  366666655543332221111       33455555555543332333333322 4555555544321100   


Q ss_pred             -cc---ccccccCccCccEEEEecccCceeecccccccccccccc----------------------------cceeecc
Q 036269          308 -IV---SDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLLK----------------------------LEWLMIV  355 (623)
Q Consensus       308 -~~---~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~----------------------------L~~L~l~  355 (623)
                       .+   ....+..+++|++|+++++ .+..+...    ....+++                            |+.|+++
T Consensus       315 ~~lp~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~----~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~  389 (680)
T 1ziw_A          315 ASLPKIDDFSFQWLKCLEHLNMEDN-DIPGIKSN----MFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLT  389 (680)
T ss_dssp             --CCEECTTTTTTCTTCCEEECCSC-CBCCCCTT----TTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECT
T ss_pred             ccccccChhhcccCCCCCEEECCCC-ccCCCChh----HhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECC
Confidence             00   0111233455555555554 23222211    2233444                            4445544


Q ss_pred             cCcccccccccccCCCcCCCccEEEEeecCCcccccchhHHHhccccceEEEeccccceeeeeccceeccccccccccCc
Q 036269          356 DNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEIERVNIAKEETELFSSL  435 (623)
Q Consensus       356 ~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L  435 (623)
                      ++. ++.+....  .+.+++|+.|++++| .+++.+|...+..+++|++|++++ +.++.+.        +..+..+++|
T Consensus       390 ~n~-l~~~~~~~--~~~l~~L~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~--------~~~~~~~~~L  456 (680)
T 1ziw_A          390 KNK-ISKIESDA--FSWLGHLEVLDLGLN-EIGQELTGQEWRGLENIFEIYLSY-NKYLQLT--------RNSFALVPSL  456 (680)
T ss_dssp             TSC-CCEECTTT--TTTCTTCCEEECCSS-CCEEECCSGGGTTCTTCCEEECCS-CSEEECC--------TTTTTTCTTC
T ss_pred             CCC-CCeEChhh--hhCCCCCCEEeCCCC-cCccccCcccccCcccccEEecCC-CCcceeC--------hhhhhcCccc
Confidence            443 22211111  235677777777774 444334433456677777777777 4455442        4455667888


Q ss_pred             cEEecCCccchhhcccCCCcccccCCccEEEEEcCCCcceeccCcccCcccchhhhhhcccccccceeccccCC----CC
Q 036269          436 EKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFCDELRQVFPANLGKKAAAEEMVLYRNRRDQIHIHATTSTS----SP  511 (623)
Q Consensus       436 ~~L~l~~c~~l~~i~~~~~~~~~l~~L~~L~l~~C~~l~~~~~~~l~~~~~L~~l~~~~~~~~~l~~~~~~~~~----~~  511 (623)
                      ++|++++| .++.+...+..+..+++|++|++++ ++++.+++..++.+++|++|++.+|....+.   ....|    ..
T Consensus       457 ~~L~l~~n-~l~~~~~~p~~~~~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~---~~~~~~~~~~~  531 (680)
T 1ziw_A          457 QRLMLRRV-ALKNVDSSPSPFQPLRNLTILDLSN-NNIANINDDMLEGLEKLEILDLQHNNLARLW---KHANPGGPIYF  531 (680)
T ss_dssp             CEEECTTS-CCBCTTCSSCTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCGGGG---STTSTTSCCCT
T ss_pred             ccchhccc-cccccccCCcccccCCCCCEEECCC-CCCCcCChhhhccccccCEEeCCCCCccccc---hhhccCCcchh
Confidence            88888877 3333333355667789999999998 4688887888889999999999988662221   11122    23


Q ss_pred             CCCCCCccEEEEecCCCcceecchhhhhccCCCCEEEEccCCchhhhhcCCCCcccCcCCCcceeecCcccceecccCcc
Q 036269          512 TPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSRCPTLQEIIMNDEGEVGLQGASTEKITFPSLFSIQLCLLDS  591 (623)
Q Consensus       512 ~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~  591 (623)
                      +..+++|+.|++++| +++.+++ ..+.++++|++|+++++. ++.++..            ....+++|+.|+++++ .
T Consensus       532 ~~~l~~L~~L~L~~N-~l~~i~~-~~~~~l~~L~~L~Ls~N~-l~~l~~~------------~~~~l~~L~~L~L~~N-~  595 (680)
T 1ziw_A          532 LKGLSHLHILNLESN-GFDEIPV-EVFKDLFELKIIDLGLNN-LNTLPAS------------VFNNQVSLKSLNLQKN-L  595 (680)
T ss_dssp             TTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CCCCCTT------------TTTTCTTCCEEECTTS-C
T ss_pred             hcCCCCCCEEECCCC-CCCCCCH-HHcccccCcceeECCCCC-CCcCCHh------------HhCCCCCCCEEECCCC-c
Confidence            678899999999984 7777744 457889999999998876 7766531            2356789999999987 6


Q ss_pred             cceecCCCCcceeecCCccEEEeccCC
Q 036269          592 LTCFCSSGSHATVEFLALEALQIIDCP  618 (623)
Q Consensus       592 l~~~~~~~~~~~~~~~~L~~L~i~~c~  618 (623)
                      ++.++. ... ...+++|++|++.++|
T Consensus       596 l~~~~~-~~~-~~~~~~L~~l~l~~N~  620 (680)
T 1ziw_A          596 ITSVEK-KVF-GPAFRNLTELDMRFNP  620 (680)
T ss_dssp             CCBCCH-HHH-HHHHTTCSEEECTTCC
T ss_pred             CCccCh-hHh-cccccccCEEEccCCC
Confidence            666654 221 1136899999988765

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=2.1e-38  Score=344.14  Aligned_cols=521  Identities=17%  Similarity=0.165  Sum_probs=387.9

Q ss_pred             eecCCCCCCCCCCCCCCCCcEEEcccCCcccccc-cC-CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCccccc
Q 036269           20 IKAGVELKDWPSINTFEDLTGISLMFNDIHEVHE-GL-QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSL   97 (623)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~   97 (623)
                      ...+.++..+|. ...+++++|++++|.++.+++ .+ ++++|++|++++|.+..+++..|.++++|++|++++|.+.  
T Consensus        17 ~c~~~~l~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~--   93 (606)
T 3vq2_A           17 QCMDQKLSKVPD-DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ--   93 (606)
T ss_dssp             ECTTSCCSSCCT-TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC--
T ss_pred             EccCCCcccCCC-CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCccc--
Confidence            344567888885 445899999999999998877 33 8999999999999999777666799999999999999994  


Q ss_pred             CCCchhhhccccCcEEeccCCcCCCCc--ccccCCcCCcEEEcCCCCCc--cccccccCCCccCEEeccCCCCCCcCchh
Q 036269           98 FSLPSSLSFLINLRTLSLHDCQHFGDL--SLIGELSLLEILDLSESDVS--EIPVSFGRLGHLRLLDLTDCYNLELIPRG  173 (623)
Q Consensus        98 ~~lp~~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~L~~L~l~~~~i~--~lp~~i~~l~~L~~L~l~~~~~~~~l~~~  173 (623)
                      ...|..+.++++|++|++++|. +..+  ..++++++|++|++++|.+.  .+|..++++++|++|++++| .+..++..
T Consensus        94 ~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n-~l~~~~~~  171 (606)
T 3vq2_A           94 SFSPGSFSGLTSLENLVAVETK-LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN-YIQTITVN  171 (606)
T ss_dssp             CCCTTSSTTCTTCCEEECTTSC-CCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS-CCCEECTT
T ss_pred             ccChhhcCCcccCCEEEccCCc-cccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC-cceecChh
Confidence            4447889999999999999999 8665  57899999999999999998  57999999999999999995 55556554


Q ss_pred             hhhccccCc----EEEecccccccccccccccccccccccccCCCCccEEEeecCCCc--cCCCc-ccccCccEEEEEeC
Q 036269          174 VLSRLRKLE----ELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGE--IMPSD-MSFQNLTSFSITIG  246 (623)
Q Consensus       174 ~~~~l~~L~----~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~-~~~~~L~~L~l~~~  246 (623)
                      .++.+.+|+    .|++++|.+.            .++.......+|+.|++++|...  .++.. ..++.|+.+.+...
T Consensus       172 ~~~~l~~L~~~l~~L~l~~n~l~------------~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~  239 (606)
T 3vq2_A          172 DLQFLRENPQVNLSLDMSLNPID------------FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILG  239 (606)
T ss_dssp             TTHHHHHCTTCCCEEECTTCCCC------------EECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEE
T ss_pred             hhhhhhccccccceeeccCCCcc------------eeCcccccCceeeeeeccCCccchhHHHHHhcccccccccccccc
Confidence            477777665    7999999873            33334444458999999998753  23333 67788888877655


Q ss_pred             CCCCCCc-chhhhhhhhcccccccceeeeccc-cccccchHHHHHHHhhceeEeecccCCcccccccccccCccCccEEE
Q 036269          247 GPEEVPL-SDFIEVFSRKFKKRCSRAMGLSQD-MRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLA  324 (623)
Q Consensus       247 ~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~  324 (623)
                      ....... ..+............++.+.+... ...+..|. +. .+++|+.|++.++.. .. ++.+  ..+++|++|+
T Consensus       240 ~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~-~l~~L~~L~l~~~~~-~~-l~~l--~~~~~L~~L~  313 (606)
T 3vq2_A          240 EFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FH-CLANVSAMSLAGVSI-KY-LEDV--PKHFKWQSLS  313 (606)
T ss_dssp             CCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CG-GGTTCSEEEEESCCC-CC-CCCC--CTTCCCSEEE
T ss_pred             ccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cc-cCCCCCEEEecCccc-hh-hhhc--cccccCCEEE
Confidence            4222110 001111111222224455555332 22223343 33 338999999998875 33 2333  6688999999


Q ss_pred             EecccCceeecccccccccccccccceeecccCcccccccccccCCCcCCCccEEEEeecCCccccc--chhHHHhcccc
Q 036269          325 IVGCNEMKYLLNSLERTLRVTLLKLEWLMIVDNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKIL--PSHLVQSFQNL  402 (623)
Q Consensus       325 l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--~~~~~~~l~~L  402 (623)
                      +++| .+..++      .. .+++|+.|+++++..+.     .++.+.+++|+.|++++| .+++..  +. .+..+++|
T Consensus       314 l~~n-~l~~lp------~~-~l~~L~~L~l~~n~~~~-----~~~~~~l~~L~~L~ls~n-~l~~~~~~~~-~~~~~~~L  378 (606)
T 3vq2_A          314 IIRC-QLKQFP------TL-DLPFLKSLTLTMNKGSI-----SFKKVALPSLSYLDLSRN-ALSFSGCCSY-SDLGTNSL  378 (606)
T ss_dssp             EESC-CCSSCC------CC-CCSSCCEEEEESCSSCE-----ECCCCCCTTCCEEECCSS-CEEEEEECCH-HHHCCSCC
T ss_pred             cccc-cCcccc------cC-CCCccceeeccCCcCcc-----chhhccCCCCCEEECcCC-ccCCCcchhh-hhccCCcc
Confidence            9999 445554      22 68999999999996443     235568899999999995 555432  44 37899999


Q ss_pred             ceEEEeccccceeeeeccceeccccccccccCccEEecCCccchhhcccCCCcccccCCccEEEEEcCCCcceeccCccc
Q 036269          403 QRLRVEGCELLVSVFEIERVNIAKEETELFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFCDELRQVFPANLG  482 (623)
Q Consensus       403 ~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~L~~L~l~~C~~l~~~~~~~l~  482 (623)
                      ++|++++ +.++.+         +..+..+++|++|++++|. ++.+.. ...+..+++|++|++++| .++...|..+.
T Consensus       379 ~~L~L~~-n~l~~~---------~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~  445 (606)
T 3vq2_A          379 RHLDLSF-NGAIIM---------SANFMGLEELQHLDFQHST-LKRVTE-FSAFLSLEKLLYLDISYT-NTKIDFDGIFL  445 (606)
T ss_dssp             CEEECCS-CSEEEE---------CCCCTTCTTCCEEECTTSE-EESTTT-TTTTTTCTTCCEEECTTS-CCEECCTTTTT
T ss_pred             cEeECCC-Cccccc---------hhhccCCCCCCeeECCCCc-cCCccC-hhhhhccccCCEEECcCC-CCCccchhhhc
Confidence            9999999 567766         6667789999999999994 443311 134567999999999996 56777788999


Q ss_pred             Ccccchhhhhhcccccccceeccc-cCCCCCCCCCCccEEEEecCCCcceecchhhhhccCCCCEEEEccCCchhhhhcC
Q 036269          483 KKAAAEEMVLYRNRRDQIHIHATT-STSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSRCPTLQEIIMN  561 (623)
Q Consensus       483 ~~~~L~~l~~~~~~~~~l~~~~~~-~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~  561 (623)
                      .+++|++|++.+|..       .+ ..|..+..+++|+.|++++| +++.+++ ..+.++++|++|++++|. ++.+...
T Consensus       446 ~l~~L~~L~l~~n~l-------~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~  515 (606)
T 3vq2_A          446 GLTSLNTLKMAGNSF-------KDNTLSNVFANTTNLTFLDLSKC-QLEQISW-GVFDTLHRLQLLNMSHNN-LLFLDSS  515 (606)
T ss_dssp             TCTTCCEEECTTCEE-------GGGEECSCCTTCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECCSSC-CSCEEGG
T ss_pred             CCCCCCEEECCCCcC-------CCcchHHhhccCCCCCEEECCCC-cCCccCh-hhhcccccCCEEECCCCc-CCCcCHH
Confidence            999999999999843       33 35778899999999999996 6777654 347889999999999997 6655211


Q ss_pred             CCCcccCcCCCcceeecCcccceecccCcccceecCCCCcceeecC-CccEEEeccCC
Q 036269          562 DEGEVGLQGASTEKITFPSLFSIQLCLLDSLTCFCSSGSHATVEFL-ALEALQIIDCP  618 (623)
Q Consensus       562 ~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~-~L~~L~i~~c~  618 (623)
                                  ....+++|++|+++++. ++.++. +..   .++ +|++|++.++|
T Consensus       516 ------------~~~~l~~L~~L~l~~N~-l~~~p~-~~~---~l~~~L~~l~l~~N~  556 (606)
T 3vq2_A          516 ------------HYNQLYSLSTLDCSFNR-IETSKG-ILQ---HFPKSLAFFNLTNNS  556 (606)
T ss_dssp             ------------GTTTCTTCCEEECTTSC-CCCEES-CGG---GSCTTCCEEECCSCC
T ss_pred             ------------HccCCCcCCEEECCCCc-CcccCH-hHh---hhcccCcEEEccCCC
Confidence                        45678899999999985 788877 432   355 69999998875

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=6.6e-38  Score=340.23  Aligned_cols=530  Identities=16%  Similarity=0.152  Sum_probs=370.8

Q ss_pred             ecCCCCCCCCCCCCCCCCcEEEcccCCcccccc-cC-CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccC
Q 036269           21 KAGVELKDWPSINTFEDLTGISLMFNDIHEVHE-GL-QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLF   98 (623)
Q Consensus        21 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~   98 (623)
                      ..+.++..+|. ...+.+++|++++|.++.+++ .+ ++++|++|++++|.+..+.+..|.++++|++|++++|.+.  .
T Consensus        19 c~~~~l~~iP~-~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~--~   95 (606)
T 3t6q_A           19 CENLGLNEIPG-TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI--F   95 (606)
T ss_dssp             CTTSCCSSCCT-TSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCS--E
T ss_pred             CCCCCcccCcC-CCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCccc--c
Confidence            33456777773 345789999999999998854 34 8999999999999998766666799999999999999985  4


Q ss_pred             CCchhhhccccCcEEeccCCcCCCCc--ccccCCcCCcEEEcCCCCCcccc-ccccCCCccCEEeccCCCCCCcCchhhh
Q 036269           99 SLPSSLSFLINLRTLSLHDCQHFGDL--SLIGELSLLEILDLSESDVSEIP-VSFGRLGHLRLLDLTDCYNLELIPRGVL  175 (623)
Q Consensus        99 ~lp~~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~~l~~~~~  175 (623)
                      ..|..+..+++|++|++++|. +..+  ..++++++|++|++++|.+..++ ..+..+++|++|++++ +.+..++.+.+
T Consensus        96 ~~~~~~~~l~~L~~L~L~~n~-i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~  173 (606)
T 3t6q_A           96 MAETALSGPKALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQN-NAIHYLSKEDM  173 (606)
T ss_dssp             ECTTTTSSCTTCCEEECTTSC-CSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCS-SCCCEECHHHH
T ss_pred             cChhhhcccccccEeeccccC-cccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEccc-CcccccChhhh
Confidence            557788999999999999998 8776  67889999999999999998652 3444599999999999 45666665558


Q ss_pred             hccccCc--EEEecccccccccccccccccccccccccCCCCccEEEeecCCCccCCCc-ccccCccEEEEEeCCCCCCC
Q 036269          176 SRLRKLE--ELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSD-MSFQNLTSFSITIGGPEEVP  252 (623)
Q Consensus       176 ~~l~~L~--~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~  252 (623)
                      +.+++|+  .|++++|.+.            ..+.......+|+.|+++++.  .++.. ..+.++....+.........
T Consensus       174 ~~l~~L~~l~L~l~~n~l~------------~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~l~~~~l~~l~~~~~~~~~  239 (606)
T 3t6q_A          174 SSLQQATNLSLNLNGNDIA------------GIEPGAFDSAVFQSLNFGGTQ--NLLVIFKGLKNSTIQSLWLGTFEDMD  239 (606)
T ss_dssp             HTTTTCCSEEEECTTCCCC------------EECTTTTTTCEEEEEECTTCS--CHHHHHHHTTTCEEEEEECCCCTTSC
T ss_pred             hhhcccceeEEecCCCccC------------ccChhHhhhccccccccCCch--hHHHHhhhccccchhheechhhcccc
Confidence            8999999  8899998873            223333445678899988775  12222 33344433334333222211


Q ss_pred             cchhhhhhhhcccccccceeeeccccccccchHHHHHHHhhceeEeecccCCcccccccccccCccCccEEEEecccCce
Q 036269          253 LSDFIEVFSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMK  332 (623)
Q Consensus       253 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~  332 (623)
                      ...+....+.......++.+.+..+... .++......+++|++|+++++.. ..++..+  ..+++|++|++++| .++
T Consensus       240 ~~~i~~~~~~~l~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l-~~lp~~l--~~l~~L~~L~l~~n-~l~  314 (606)
T 3t6q_A          240 DEDISPAVFEGLCEMSVESINLQKHYFF-NISSNTFHCFSGLQELDLTATHL-SELPSGL--VGLSTLKKLVLSAN-KFE  314 (606)
T ss_dssp             CCCCCGGGGGGGGGSEEEEEECTTCCCS-SCCTTTTTTCTTCSEEECTTSCC-SCCCSSC--CSCTTCCEEECTTC-CCS
T ss_pred             ccccChhHhchhhcCceeEEEeecCccC-ccCHHHhccccCCCEEeccCCcc-CCCChhh--cccccCCEEECccC-CcC
Confidence            1122222222223336677777765443 34333222238999999998863 4444443  67899999999999 555


Q ss_pred             eecccccccccccccccceeecccCcccccccccccCCCcCCCccEEEEeecCCccccc--chhHHHhccccceEEEecc
Q 036269          333 YLLNSLERTLRVTLLKLEWLMIVDNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKIL--PSHLVQSFQNLQRLRVEGC  410 (623)
Q Consensus       333 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--~~~~~~~l~~L~~L~l~~c  410 (623)
                      .+...    ....+++|+.|+++++.....+..+.  .+.+++|+.|++++| .+++..  +. .+..+++|++|++++ 
T Consensus       315 ~~~~~----~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~l~~L~~L~l~~n-~l~~~~~~~~-~~~~l~~L~~L~l~~-  385 (606)
T 3t6q_A          315 NLCQI----SASNFPSLTHLSIKGNTKRLELGTGC--LENLENLRELDLSHD-DIETSDCCNL-QLRNLSHLQSLNLSY-  385 (606)
T ss_dssp             BGGGG----CGGGCTTCSEEECCSCSSCCBCCSST--TTTCTTCCEEECCSS-CCCEEEESTT-TTTTCTTCCEEECCS-
T ss_pred             cCchh----hhhccCcCCEEECCCCCcccccchhh--hhccCcCCEEECCCC-ccccccCcch-hcccCCCCCEEECCC-
Confidence            54332    45678999999999986322221111  346899999999985 454432  33 367899999999999 


Q ss_pred             ccceeeeeccceeccccccccccCccEEecCCccchhhcccCCCcccccCCccEEEEEcCCCcceeccCcccCcccchhh
Q 036269          411 ELLVSVFEIERVNIAKEETELFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFCDELRQVFPANLGKKAAAEEM  490 (623)
Q Consensus       411 ~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~L~~L~l~~C~~l~~~~~~~l~~~~~L~~l  490 (623)
                      +.++.+.        +..+..+++|++|++++|. ++.. ..+..+..+++|++|++++| .++..+|..++.+++|++|
T Consensus       386 n~l~~~~--------~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L  454 (606)
T 3t6q_A          386 NEPLSLK--------TEAFKECPQLELLDLAFTR-LKVK-DAQSPFQNLHLLKVLNLSHS-LLDISSEQLFDGLPALQHL  454 (606)
T ss_dssp             CSCEEEC--------TTTTTTCTTCSEEECTTCC-EECC-TTCCTTTTCTTCCEEECTTC-CCBTTCTTTTTTCTTCCEE
T ss_pred             CcCCcCC--------HHHhcCCccCCeEECCCCc-CCCc-ccchhhhCcccCCEEECCCC-ccCCcCHHHHhCCCCCCEE
Confidence            6666653        5567788999999999984 4432 11223567899999999995 5677778888999999999


Q ss_pred             hhhcccccccceeccccCCCCCCCCCCccEEEEecCCCcceecchhhhhccCCCCEEEEccCCchhhhhcCCCCcccCcC
Q 036269          491 VLYRNRRDQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSRCPTLQEIIMNDEGEVGLQG  570 (623)
Q Consensus       491 ~~~~~~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~  570 (623)
                      ++.+|....    ..-..+..+..+++|+.|++++| +++.+++ ..+..+++|++|++++|. ++.....         
T Consensus       455 ~L~~n~l~~----~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~---------  518 (606)
T 3t6q_A          455 NLQGNHFPK----GNIQKTNSLQTLGRLEILVLSFC-DLSSIDQ-HAFTSLKMMNHVDLSHNR-LTSSSIE---------  518 (606)
T ss_dssp             ECTTCBCGG----GEECSSCGGGGCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECCSSC-CCGGGGG---------
T ss_pred             ECCCCCCCc----cccccchhhccCCCccEEECCCC-ccCccCh-hhhccccCCCEEECCCCc-cCcCChh---------
Confidence            999985411    00122345678999999999996 6777654 347889999999999997 6555321         


Q ss_pred             CCcceeecCcccceecccCcccceecCCCCcceeecCCccEEEeccCC
Q 036269          571 ASTEKITFPSLFSIQLCLLDSLTCFCSSGSHATVEFLALEALQIIDCP  618 (623)
Q Consensus       571 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~  618 (623)
                         ....++.| .|+++++ .++.++. ..  ...+++|+.|+++++|
T Consensus       519 ---~l~~l~~L-~L~L~~N-~l~~~~~-~~--~~~l~~L~~L~l~~N~  558 (606)
T 3t6q_A          519 ---ALSHLKGI-YLNLASN-HISIILP-SL--LPILSQQRTINLRQNP  558 (606)
T ss_dssp             ---GGTTCCSC-EEECCSS-CCCCCCG-GG--HHHHHTSSEEECTTCC
T ss_pred             ---HhCccccc-EEECcCC-cccccCH-hh--cccCCCCCEEeCCCCC
Confidence               34567788 8899887 4444433 21  2347899999999876

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.2e-38  Score=353.65  Aligned_cols=369  Identities=18%  Similarity=0.167  Sum_probs=171.3

Q ss_pred             CCCCCCcEEEcccCCcccccc-c---C-CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhcc
Q 036269           33 NTFEDLTGISLMFNDIHEVHE-G---L-QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFL  107 (623)
Q Consensus        33 ~~~~~l~~L~l~~~~~~~l~~-~---~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l  107 (623)
                      ..+++|++|++++|.++.... .   . .+++|++|++++|.+....+  +..+++|++|++++|.+.  +.+|. +.++
T Consensus       148 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~--~~~~~-l~~l  222 (768)
T 3rgz_A          148 LKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFS--TGIPF-LGDC  222 (768)
T ss_dssp             CCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCC--SCCCB-CTTC
T ss_pred             ccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCC--CCCcc-cccC
Confidence            355677777777777654332 1   2 45556666665555543222  245555555555555553  23333 5555


Q ss_pred             ccCcEEeccCCcCCCC-c-ccccCCcCCcEEEcCCCCCc-cccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEE
Q 036269          108 INLRTLSLHDCQHFGD-L-SLIGELSLLEILDLSESDVS-EIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEEL  184 (623)
Q Consensus       108 ~~L~~L~l~~~~~l~~-i-~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L  184 (623)
                      ++|++|++++|. +.. + ..++++++|++|++++|.+. .+|..  .+++|++|++++|...+.+|..+...+++|++|
T Consensus       223 ~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L  299 (768)
T 3rgz_A          223 SALQHLDISGNK-LSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGL  299 (768)
T ss_dssp             CSCCEEECCSSC-CCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEE
T ss_pred             CCCCEEECcCCc-CCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEE
Confidence            555555555555 432 2 34555555555555555554 22221  445555555555333334444322223455555


Q ss_pred             EecccccccccccccccccccccccccCCCCccEEEeecCCCc-cCCCc--ccccCccEEEEEeCCCCCCCcchhhhhh-
Q 036269          185 YMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGE-IMPSD--MSFQNLTSFSITIGGPEEVPLSDFIEVF-  260 (623)
Q Consensus       185 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~-  260 (623)
                      ++++|.+.           ...+..++.+++|+.|++++|.+. .+|..  ..+++|+.|+++.+......+..+.... 
T Consensus       300 ~Ls~n~l~-----------~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~  368 (768)
T 3rgz_A          300 DLSGNHFY-----------GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA  368 (768)
T ss_dssp             ECCSSEEE-----------ECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTT
T ss_pred             ECcCCcCC-----------CccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhc
Confidence            55554441           223334444444444444444432 33322  3344444444444332211111111000 


Q ss_pred             -------------------hhcccccccceeeeccccccccchHHHHHHHhhceeEeecccCCcccccccccccCccCcc
Q 036269          261 -------------------SRKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELM  321 (623)
Q Consensus       261 -------------------~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~  321 (623)
                                         ......+.++.+.+..+...+.+|.++... ++|+.|++++|......+..+  ..+++|+
T Consensus       369 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~l--~~l~~L~  445 (768)
T 3rgz_A          369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC-SELVSLHLSFNYLSGTIPSSL--GSLSKLR  445 (768)
T ss_dssp             TCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGC-TTCCEEECCSSEEESCCCGGG--GGCTTCC
T ss_pred             CCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcC-CCCCEEECcCCcccCcccHHH--hcCCCCC
Confidence                               000013345555555554444455544443 556666665554322222222  3455666


Q ss_pred             EEEEecccCceeecccccccccccccccceeecccCcccccccccccC--CCcCCCccEEEEeecCCcccccchhHHHhc
Q 036269          322 FLAIVGCNEMKYLLNSLERTLRVTLLKLEWLMIVDNRNFVEICHGQLP--AGCLSNVKRLDVRDCGSVLKILPSHLVQSF  399 (623)
Q Consensus       322 ~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~--~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l  399 (623)
                      .|++++|.-...++.     ....+++|+.|++++|. ++    +.+|  .+.+++|+.|++++| .+++.+|.. +..+
T Consensus       446 ~L~L~~n~l~~~~p~-----~~~~l~~L~~L~L~~N~-l~----~~~p~~l~~l~~L~~L~L~~N-~l~~~~p~~-~~~l  513 (768)
T 3rgz_A          446 DLKLWLNMLEGEIPQ-----ELMYVKTLETLILDFND-LT----GEIPSGLSNCTNLNWISLSNN-RLTGEIPKW-IGRL  513 (768)
T ss_dssp             EEECCSSCCCSCCCG-----GGGGCTTCCEEECCSSC-CC----SCCCGGGGGCTTCCEEECCSS-CCCSCCCGG-GGGC
T ss_pred             EEECCCCcccCcCCH-----HHcCCCCceEEEecCCc-cc----CcCCHHHhcCCCCCEEEccCC-ccCCcCChH-HhcC
Confidence            666666621112221     23345566666666654 11    1122  234566666666663 344434443 5556


Q ss_pred             cccceEEEeccccceeeeeccceeccccccccccCccEEecCCcc
Q 036269          400 QNLQRLRVEGCELLVSVFEIERVNIAKEETELFSSLEKLTLIGLP  444 (623)
Q Consensus       400 ~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~  444 (623)
                      ++|++|++++ +.++...        |..+..+++|+.|++++|+
T Consensus       514 ~~L~~L~L~~-N~l~~~~--------p~~l~~l~~L~~L~Ls~N~  549 (768)
T 3rgz_A          514 ENLAILKLSN-NSFSGNI--------PAELGDCRSLIWLDLNTNL  549 (768)
T ss_dssp             TTCCEEECCS-SCCEEEC--------CGGGGGCTTCCEEECCSSE
T ss_pred             CCCCEEECCC-CcccCcC--------CHHHcCCCCCCEEECCCCc
Confidence            6666666666 3443222        4455556666666666653

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=9.2e-37  Score=331.20  Aligned_cols=502  Identities=15%  Similarity=0.140  Sum_probs=370.3

Q ss_pred             CCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEecc
Q 036269           37 DLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLH  116 (623)
Q Consensus        37 ~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~  116 (623)
                      .-++++.+++.++.+|.... +++++|++++|.+..++...|+++++|++|++++|.+.  +..|.++.++++|++|+++
T Consensus        12 ~~~~~~c~~~~l~~ip~~~~-~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~--~i~~~~~~~l~~L~~L~Ls   88 (606)
T 3vq2_A           12 PNITYQCMDQKLSKVPDDIP-SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE--TIEDKAWHGLHHLSNLILT   88 (606)
T ss_dssp             TTTEEECTTSCCSSCCTTSC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC--EECTTTTTTCTTCCEEECT
T ss_pred             CCCceEccCCCcccCCCCCC-CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc--ccCHHHhhchhhcCEeECC
Confidence            34678999999999998664 78999999999999777766899999999999999994  3446678999999999999


Q ss_pred             CCcCCCCc--ccccCCcCCcEEEcCCCCCcccc-ccccCCCccCEEeccCCCCCC-cCchhhhhccccCcEEEecccccc
Q 036269          117 DCQHFGDL--SLIGELSLLEILDLSESDVSEIP-VSFGRLGHLRLLDLTDCYNLE-LIPRGVLSRLRKLEELYMSKTFCH  192 (623)
Q Consensus       117 ~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~-~l~~~~~~~l~~L~~L~l~~~~~~  192 (623)
                      +|. +..+  ..++++++|++|++++|.+..+| ..++++++|++|++++|.... .+|.. ++++++|++|++++|.+.
T Consensus        89 ~n~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~  166 (606)
T 3vq2_A           89 GNP-IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQ  166 (606)
T ss_dssp             TCC-CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCCC
T ss_pred             CCc-ccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCcce
Confidence            999 8666  67999999999999999999776 789999999999999965433 46765 899999999999999873


Q ss_pred             cccccccccccccccccccCCCC----ccEEEeecCCCccCCCc-ccccCccEEEEEeCCCCCCCcchhhhhhhhccccc
Q 036269          193 WQFENEDDSRSNAKFIELGALSR----LTSLHIDIPEGEIMPSD-MSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKR  267 (623)
Q Consensus       193 ~~~~~~~~~~~~~~~~~l~~l~~----L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~  267 (623)
                                 ...+..++.+++    +..+++++|.+..++.. ....+|+.++++++.....   ..... .  ...+
T Consensus       167 -----------~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~---~~~~~-~--~~l~  229 (606)
T 3vq2_A          167 -----------TITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSN---IMKTC-L--QNLA  229 (606)
T ss_dssp             -----------EECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHH---HHHHH-H--HTTT
T ss_pred             -----------ecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchh---HHHHH-h--cccc
Confidence                       233344544444    44899999998888776 4445899999998753210   00000 0  1233


Q ss_pred             ccceeeecccc-----ccccchHHHHHHH--hhceeEeecccCCcccccccccccCccCccEEEEecccCceeecccccc
Q 036269          268 CSRAMGLSQDM-----RISALPSWIKNLL--LRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLER  340 (623)
Q Consensus       268 ~l~~l~l~~~~-----~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~  340 (623)
                      .++.+.+....     .+..++......+  ..++.+++.....+....+.+  ..+++|+.++++++ .+..++     
T Consensus       230 ~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~-~~~~l~-----  301 (606)
T 3vq2_A          230 GLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKF--HCLANVSAMSLAGV-SIKYLE-----  301 (606)
T ss_dssp             TCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSC--GGGTTCSEEEEESC-CCCCCC-----
T ss_pred             ccccccccccccccCCcccccChHHhhhhhhccHhheecccccccccccccc--ccCCCCCEEEecCc-cchhhh-----
Confidence            34443332211     1111111111000  246667775666666655553  67899999999999 555554     


Q ss_pred             cccccccccceeecccCcccccccccccCCCcCCCccEEEEeecCCcccccchhHHHhccccceEEEeccccceeeeecc
Q 036269          341 TLRVTLLKLEWLMIVDNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEIE  420 (623)
Q Consensus       341 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~  420 (623)
                       ....+++|+.|++.+|.. ..     +|.-.+++|+.|++++|..+.. .+   +..+++|++|++++ +.++.+..  
T Consensus       302 -~l~~~~~L~~L~l~~n~l-~~-----lp~~~l~~L~~L~l~~n~~~~~-~~---~~~l~~L~~L~ls~-n~l~~~~~--  367 (606)
T 3vq2_A          302 -DVPKHFKWQSLSIIRCQL-KQ-----FPTLDLPFLKSLTLTMNKGSIS-FK---KVALPSLSYLDLSR-NALSFSGC--  367 (606)
T ss_dssp             -CCCTTCCCSEEEEESCCC-SS-----CCCCCCSSCCEEEEESCSSCEE-CC---CCCCTTCCEEECCS-SCEEEEEE--
T ss_pred             -hccccccCCEEEcccccC-cc-----cccCCCCccceeeccCCcCccc-hh---hccCCCCCEEECcC-CccCCCcc--
Confidence             345678999999999973 33     3322789999999999866654 32   45789999999999 66665421  


Q ss_pred             ceeccccccccccCccEEecCCccchhhcccCCCcccccCCccEEEEEcCCCcceecc-CcccCcccchhhhhhcccccc
Q 036269          421 RVNIAKEETELFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFCDELRQVFP-ANLGKKAAAEEMVLYRNRRDQ  499 (623)
Q Consensus       421 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~L~~L~l~~C~~l~~~~~-~~l~~~~~L~~l~~~~~~~~~  499 (623)
                          .+..+..+++|++|++++|. ++.+   +..+..+++|++|++++| .+...+| ..+..+++|++|++.+|..  
T Consensus       368 ----~~~~~~~~~~L~~L~L~~n~-l~~~---~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l--  436 (606)
T 3vq2_A          368 ----CSYSDLGTNSLRHLDLSFNG-AIIM---SANFMGLEELQHLDFQHS-TLKRVTEFSAFLSLEKLLYLDISYTNT--  436 (606)
T ss_dssp             ----CCHHHHCCSCCCEEECCSCS-EEEE---CCCCTTCTTCCEEECTTS-EEESTTTTTTTTTCTTCCEEECTTSCC--
T ss_pred             ----hhhhhccCCcccEeECCCCc-cccc---hhhccCCCCCCeeECCCC-ccCCccChhhhhccccCCEEECcCCCC--
Confidence                14456779999999999994 6665   456677999999999995 5666655 6788999999999999844  


Q ss_pred             cceeccccCCCCCCCCCCccEEEEecCCCcce-ecchhhhhccCCCCEEEEccCCchhhhhcCCCCcccCcCCCcceeec
Q 036269          500 IHIHATTSTSSPTPSLGNLVSITIRGCGKLRN-LFTTSMVKSLVRLESLEVSRCPTLQEIIMNDEGEVGLQGASTEKITF  578 (623)
Q Consensus       500 l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~-~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~l  578 (623)
                           ....|..+..+++|+.|++++| .++. ..+ ..+..+++|++|++++|. ++.++..            ....+
T Consensus       437 -----~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~~------------~~~~l  496 (606)
T 3vq2_A          437 -----KIDFDGIFLGLTSLNTLKMAGN-SFKDNTLS-NVFANTTNLTFLDLSKCQ-LEQISWG------------VFDTL  496 (606)
T ss_dssp             -----EECCTTTTTTCTTCCEEECTTC-EEGGGEEC-SCCTTCTTCCEEECTTSC-CCEECTT------------TTTTC
T ss_pred             -----CccchhhhcCCCCCCEEECCCC-cCCCcchH-HhhccCCCCCEEECCCCc-CCccChh------------hhccc
Confidence                 5556777889999999999996 4443 223 347889999999999997 6655321            35678


Q ss_pred             CcccceecccCccccee-cCCCCcceeecCCccEEEeccCC
Q 036269          579 PSLFSIQLCLLDSLTCF-CSSGSHATVEFLALEALQIIDCP  618 (623)
Q Consensus       579 ~~L~~L~l~~c~~l~~~-~~~~~~~~~~~~~L~~L~i~~c~  618 (623)
                      ++|++|+++++. ++.+ +. ..   ..+++|++|++++|+
T Consensus       497 ~~L~~L~Ls~N~-l~~~~~~-~~---~~l~~L~~L~l~~N~  532 (606)
T 3vq2_A          497 HRLQLLNMSHNN-LLFLDSS-HY---NQLYSLSTLDCSFNR  532 (606)
T ss_dssp             TTCCEEECCSSC-CSCEEGG-GT---TTCTTCCEEECTTSC
T ss_pred             ccCCEEECCCCc-CCCcCHH-Hc---cCCCcCCEEECCCCc
Confidence            999999999984 4444 33 22   247999999999985

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=9.2e-36  Score=327.74  Aligned_cols=526  Identities=18%  Similarity=0.170  Sum_probs=335.3

Q ss_pred             CcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccC
Q 036269           38 LTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHD  117 (623)
Q Consensus        38 l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~  117 (623)
                      .+.++.+++.++.+|.... +++++|++++|.+..++...|.++++|++|++++|.+.  +..|..+.++++|++|++++
T Consensus         6 ~~~~~cs~~~L~~ip~~~~-~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~   82 (680)
T 1ziw_A            6 HEVADCSHLKLTQVPDDLP-TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS--KLEPELCQKLPMLKVLNLQH   82 (680)
T ss_dssp             SSEEECCSSCCSSCCSCSC-TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCC--CCCTTHHHHCTTCCEEECCS
T ss_pred             CCeeECCCCCccccccccC-CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccC--ccCHHHHhcccCcCEEECCC
Confidence            3578899999999997664 78999999999999888887899999999999999995  55677899999999999999


Q ss_pred             CcCCCCc--ccccCCcCCcEEEcCCCCCcccc-ccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecccccccc
Q 036269          118 CQHFGDL--SLIGELSLLEILDLSESDVSEIP-VSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQ  194 (623)
Q Consensus       118 ~~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~  194 (623)
                      |. +..+  ..++++++|++|++++|.++.+| ..++++++|++|++++|. +...+...+.++++|++|++++|.+.  
T Consensus        83 n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~--  158 (680)
T 1ziw_A           83 NE-LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNNKIQ--  158 (680)
T ss_dssp             SC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSC-CSCCCCCSSSCCTTCCEEECCSSCCC--
T ss_pred             Cc-cCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCc-ccccCchhhcccccCCEEEccCCccc--
Confidence            98 8777  35899999999999999999776 679999999999999964 44454444889999999999999873  


Q ss_pred             cccccccccccccccc--cCCCCccEEEeecCCCccCCCc--ccccCccEEEEEeCCCCCCCcchhhhhhhhcccccccc
Q 036269          195 FENEDDSRSNAKFIEL--GALSRLTSLHIDIPEGEIMPSD--MSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSR  270 (623)
Q Consensus       195 ~~~~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~  270 (623)
                               ...+..+  ..+++|+.|++++|.+..++..  ..+.+|+.+.+..+...   ...... .......+.++
T Consensus       159 ---------~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~---~~~~~~-~~~~l~~~~L~  225 (680)
T 1ziw_A          159 ---------ALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLG---PSLTEK-LCLELANTSIR  225 (680)
T ss_dssp             ---------CBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCH---HHHHHH-HHHHHTTSCCC
T ss_pred             ---------ccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccC---hhhHHH-HHHHhhhcccc
Confidence                     2222222  3568999999999987766554  56677777766544321   000000 00111235667


Q ss_pred             eeeeccccccccchHHHHHHH-hhceeEeecccCCcccccccccccCccCccEEEEecccCceeeccccccccccccccc
Q 036269          271 AMGLSQDMRISALPSWIKNLL-LRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLLKL  349 (623)
Q Consensus       271 ~l~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L  349 (623)
                      .+.+..+...+..|.++.... ++|++|++++|... ...+. .+..+++|+.|+++++ .+..+...    ....+++|
T Consensus       226 ~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~-~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~----~~~~l~~L  298 (680)
T 1ziw_A          226 NLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN-VVGND-SFAWLPQLEYFFLEYN-NIQHLFSH----SLHGLFNV  298 (680)
T ss_dssp             EEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCC-EECTT-TTTTCTTCCEEECCSC-CBSEECTT----TTTTCTTC
T ss_pred             EEEccCCcccccChhHhhccCcCCCCEEECCCCCcC-ccCcc-cccCcccccEeeCCCC-ccCccChh----hhcCCCCc
Confidence            777766554434444444331 23788888777532 22211 1255777888888777 44443322    34456677


Q ss_pred             ceeecccCcccccccc------cccCCCcCCCccEEEEeecCCcccccchhHHHhccccceEEEeccc------------
Q 036269          350 EWLMIVDNRNFVEICH------GQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCE------------  411 (623)
Q Consensus       350 ~~L~l~~~~~l~~~~~------~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~------------  411 (623)
                      +.|++.++..-..+..      .....+.+++|+.|++++| .+++..+ ..+..+++|++|++++|.            
T Consensus       299 ~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~  376 (680)
T 1ziw_A          299 RYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN-DIPGIKS-NMFTGLINLKYLSLSNSFTSLRTLTNETFV  376 (680)
T ss_dssp             CEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSC-CBCCCCT-TTTTTCTTCCEEECTTCBSCCCEECTTTTG
T ss_pred             cEEeccchhhhcccccccccccChhhcccCCCCCEEECCCC-ccCCCCh-hHhccccCCcEEECCCCchhhhhcchhhhc
Confidence            7777765421100000      0111234566666666663 4444222 235566666666666532            


Q ss_pred             ---------------cceeeeeccceeccccccccccCccEEecCCccchhhcccCCCcccccCCccEEEEEcCCCccee
Q 036269          412 ---------------LLVSVFEIERVNIAKEETELFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFCDELRQV  476 (623)
Q Consensus       412 ---------------~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~L~~L~l~~C~~l~~~  476 (623)
                                     .++.+.        +..+..+++|+.|++++|.-...+.  +..+..+++|++|++++| +++.+
T Consensus       377 ~~~~~~L~~L~L~~n~l~~~~--------~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~~l~~L~~L~Ls~n-~l~~~  445 (680)
T 1ziw_A          377 SLAHSPLHILNLTKNKISKIE--------SDAFSWLGHLEVLDLGLNEIGQELT--GQEWRGLENIFEIYLSYN-KYLQL  445 (680)
T ss_dssp             GGTTSCCCEEECTTSCCCEEC--------TTTTTTCTTCCEEECCSSCCEEECC--SGGGTTCTTCCEEECCSC-SEEEC
T ss_pred             ccccCcCceEECCCCCCCeEC--------hhhhhCCCCCCEEeCCCCcCccccC--cccccCcccccEEecCCC-Cccee
Confidence                           222221        3445567777777777774222221  123455677777777774 46666


Q ss_pred             ccCcccCcccchhhhhhcccccccceeccccCCCCCCCCCCccEEEEecCCCcceecchhhhhccCCCCEEEEccCCchh
Q 036269          477 FPANLGKKAAAEEMVLYRNRRDQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSRCPTLQ  556 (623)
Q Consensus       477 ~~~~l~~~~~L~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~  556 (623)
                      .+..+..+++|+.|++.+|...     ..+..|..+..+++|+.|++++| +++.+++ ..+.++++|++|++++|. ++
T Consensus       446 ~~~~~~~~~~L~~L~l~~n~l~-----~~~~~p~~~~~l~~L~~L~Ls~N-~l~~i~~-~~~~~l~~L~~L~Ls~N~-l~  517 (680)
T 1ziw_A          446 TRNSFALVPSLQRLMLRRVALK-----NVDSSPSPFQPLRNLTILDLSNN-NIANIND-DMLEGLEKLEILDLQHNN-LA  517 (680)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCB-----CTTCSSCTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CG
T ss_pred             ChhhhhcCcccccchhcccccc-----ccccCCcccccCCCCCEEECCCC-CCCcCCh-hhhccccccCEEeCCCCC-cc
Confidence            6666777777777777766331     11345666777888888888874 5666644 346777888888888776 55


Q ss_pred             hhhcCC----------------------CCcccCcCCCcceeecCcccceecccCcccceecCCCCcceeecCCccEEEe
Q 036269          557 EIIMND----------------------EGEVGLQGASTEKITFPSLFSIQLCLLDSLTCFCSSGSHATVEFLALEALQI  614 (623)
Q Consensus       557 ~l~~~~----------------------~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i  614 (623)
                      .++...                      +.+..++  ......+++|+.|+++++ .++.++. +..  ..+++|+.|++
T Consensus       518 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~--~~~~~~l~~L~~L~Ls~N-~l~~l~~-~~~--~~l~~L~~L~L  591 (680)
T 1ziw_A          518 RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIP--VEVFKDLFELKIIDLGLN-NLNTLPA-SVF--NNQVSLKSLNL  591 (680)
T ss_dssp             GGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSS-CCCCCCT-TTT--TTCTTCCEEEC
T ss_pred             ccchhhccCCcchhhcCCCCCCEEECCCCCCCCCC--HHHcccccCcceeECCCC-CCCcCCH-hHh--CCCCCCCEEEC
Confidence            542210                      0011110  002345667777777664 5666654 321  23678888888


Q ss_pred             ccC
Q 036269          615 IDC  617 (623)
Q Consensus       615 ~~c  617 (623)
                      +++
T Consensus       592 ~~N  594 (680)
T 1ziw_A          592 QKN  594 (680)
T ss_dssp             TTS
T ss_pred             CCC
Confidence            776

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=3.7e-36  Score=326.45  Aligned_cols=509  Identities=17%  Similarity=0.151  Sum_probs=362.6

Q ss_pred             CcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccC
Q 036269           38 LTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHD  117 (623)
Q Consensus        38 l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~  117 (623)
                      -++++.++..++.+|..+. +.+++|++++|.+..+++..|.++++|++|++++|.+.  +..|..+.++++|++|++++
T Consensus        14 ~~~~~c~~~~l~~iP~~l~-~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~--~~~~~~~~~l~~L~~L~Ls~   90 (606)
T 3t6q_A           14 NKTYNCENLGLNEIPGTLP-NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY--WIHEDTFQSQHRLDTLVLTA   90 (606)
T ss_dssp             TTEEECTTSCCSSCCTTSC-TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCC--EECTTTTTTCTTCCEEECTT
T ss_pred             CceEECCCCCcccCcCCCC-CcCcEEEccCCccCcCChhHhccCccceEEECCCCccc--eeChhhccCccccCeeeCCC
Confidence            4567888888999987663 47999999999999776666799999999999999995  45678899999999999999


Q ss_pred             CcCCCCc--ccccCCcCCcEEEcCCCCCccc-cccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecccccccc
Q 036269          118 CQHFGDL--SLIGELSLLEILDLSESDVSEI-PVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQ  194 (623)
Q Consensus       118 ~~~l~~i--~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~  194 (623)
                      |. +..+  ..++++++|++|++++|.++.+ |..++++++|++|++++| .+..++...+..+++|++|++++|.+.  
T Consensus        91 n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~--  166 (606)
T 3t6q_A           91 NP-LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN-HISSIKLPKGFPTEKLKVLDFQNNAIH--  166 (606)
T ss_dssp             CC-CSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSS-CCCCCCCCTTCCCTTCCEEECCSSCCC--
T ss_pred             Cc-ccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCC-cccccCcccccCCcccCEEEcccCccc--
Confidence            98 8665  5789999999999999999977 678999999999999995 455543212556999999999999873  


Q ss_pred             cccccccccccccccccCCCCcc--EEEeecCCCccCCCc-ccccCccEEEEEeCCCCCCCcchhhhhhhhcccccccce
Q 036269          195 FENEDDSRSNAKFIELGALSRLT--SLHIDIPEGEIMPSD-MSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSRA  271 (623)
Q Consensus       195 ~~~~~~~~~~~~~~~l~~l~~L~--~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~  271 (623)
                               ...+..++.+++|+  .|++++|.+..+++. ....+|+.+++.++...       .. .........+..
T Consensus       167 ---------~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~-------~~-~~~~l~~~~l~~  229 (606)
T 3t6q_A          167 ---------YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNL-------LV-IFKGLKNSTIQS  229 (606)
T ss_dssp             ---------EECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCH-------HH-HHHHTTTCEEEE
T ss_pred             ---------ccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhH-------HH-Hhhhccccchhh
Confidence                     33456678888898  899999988777655 55567888888765411       00 011111112222


Q ss_pred             eeeccccc--cccchHHHH-HHH-hhceeEeecccCCcccccccccccCccCccEEEEecccCceeeccccccccccccc
Q 036269          272 MGLSQDMR--ISALPSWIK-NLL-LRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLL  347 (623)
Q Consensus       272 l~l~~~~~--~~~~~~~~~-~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~  347 (623)
                      +.+.....  ...++.... ... .+++.|+++++.. ..+.+. .+..+++|++|+++++ .++.++.     ....++
T Consensus       230 l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l-~~~~~~-~~~~l~~L~~L~l~~n-~l~~lp~-----~l~~l~  301 (606)
T 3t6q_A          230 LWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF-FNISSN-TFHCFSGLQELDLTAT-HLSELPS-----GLVGLS  301 (606)
T ss_dssp             EECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCC-SSCCTT-TTTTCTTCSEEECTTS-CCSCCCS-----SCCSCT
T ss_pred             eechhhccccccccChhHhchhhcCceeEEEeecCcc-CccCHH-HhccccCCCEEeccCC-ccCCCCh-----hhcccc
Confidence            22211100  001111111 110 2789999988764 333222 2367899999999999 6666654     345688


Q ss_pred             ccceeecccCcccccccccccCCCcCCCccEEEEeecCCcccccchhHHHhccccceEEEeccccceeeeeccceecccc
Q 036269          348 KLEWLMIVDNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEIERVNIAKE  427 (623)
Q Consensus       348 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~  427 (623)
                      +|++|+++++. +.....  ...+.+++|+.|++++|..... ++...+..+++|++|++++ +.++.+..      .+.
T Consensus       302 ~L~~L~l~~n~-l~~~~~--~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~l~~L~~L~l~~-n~l~~~~~------~~~  370 (606)
T 3t6q_A          302 TLKKLVLSANK-FENLCQ--ISASNFPSLTHLSIKGNTKRLE-LGTGCLENLENLRELDLSH-DDIETSDC------CNL  370 (606)
T ss_dssp             TCCEEECTTCC-CSBGGG--GCGGGCTTCSEEECCSCSSCCB-CCSSTTTTCTTCCEEECCS-SCCCEEEE------STT
T ss_pred             cCCEEECccCC-cCcCch--hhhhccCcCCEEECCCCCcccc-cchhhhhccCcCCEEECCC-CccccccC------cch
Confidence            99999999986 333211  1234789999999999644433 5555577899999999999 66665521      033


Q ss_pred             ccccccCccEEecCCccchhhcccCCCcccccCCccEEEEEcCCCcceec-cCcccCcccchhhhhhcccccccceeccc
Q 036269          428 ETELFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFCDELRQVF-PANLGKKAAAEEMVLYRNRRDQIHIHATT  506 (623)
Q Consensus       428 ~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~L~~L~l~~C~~l~~~~-~~~l~~~~~L~~l~~~~~~~~~l~~~~~~  506 (623)
                      .+..+++|++|++++|. ++.+.  +..+..+++|++|++++| .++... +..++.+++|++|++.+|..       ..
T Consensus       371 ~~~~l~~L~~L~l~~n~-l~~~~--~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l-------~~  439 (606)
T 3t6q_A          371 QLRNLSHLQSLNLSYNE-PLSLK--TEAFKECPQLELLDLAFT-RLKVKDAQSPFQNLHLLKVLNLSHSLL-------DI  439 (606)
T ss_dssp             TTTTCTTCCEEECCSCS-CEEEC--TTTTTTCTTCSEEECTTC-CEECCTTCCTTTTCTTCCEEECTTCCC-------BT
T ss_pred             hcccCCCCCEEECCCCc-CCcCC--HHHhcCCccCCeEECCCC-cCCCcccchhhhCcccCCEEECCCCcc-------CC
Confidence            56778999999999984 44331  345567899999999995 555543 44588899999999999844       45


Q ss_pred             cCCCCCCCCCCccEEEEecCCCcce-ecchhhhhccCCCCEEEEccCCchhhhhcCCCCcccCcCCCcceeecCccccee
Q 036269          507 STSSPTPSLGNLVSITIRGCGKLRN-LFTTSMVKSLVRLESLEVSRCPTLQEIIMNDEGEVGLQGASTEKITFPSLFSIQ  585 (623)
Q Consensus       507 ~~~~~~~~l~~L~~L~i~~c~~l~~-~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~  585 (623)
                      ..|..+..+++|++|++++|.--.. ++....+..+++|++|++++|. ++.+...            ....+++|++|+
T Consensus       440 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~------------~~~~l~~L~~L~  506 (606)
T 3t6q_A          440 SSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD-LSSIDQH------------AFTSLKMMNHVD  506 (606)
T ss_dssp             TCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC-CCEECTT------------TTTTCTTCCEEE
T ss_pred             cCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc-cCccChh------------hhccccCCCEEE
Confidence            5567788899999999999653321 2223457889999999999997 6655321            456789999999


Q ss_pred             cccCcccceecCCCCcceeecCCccEEEeccCC
Q 036269          586 LCLLDSLTCFCSSGSHATVEFLALEALQIIDCP  618 (623)
Q Consensus       586 l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~  618 (623)
                      ++++. ++.... ..  ...+++| +|++++|.
T Consensus       507 Ls~N~-l~~~~~-~~--l~~l~~L-~L~L~~N~  534 (606)
T 3t6q_A          507 LSHNR-LTSSSI-EA--LSHLKGI-YLNLASNH  534 (606)
T ss_dssp             CCSSC-CCGGGG-GG--GTTCCSC-EEECCSSC
T ss_pred             CCCCc-cCcCCh-hH--hCccccc-EEECcCCc
Confidence            99984 444432 11  2246788 89988874

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=8.8e-36  Score=321.32  Aligned_cols=501  Identities=18%  Similarity=0.182  Sum_probs=356.5

Q ss_pred             eecCCCCCCCCCCCCCCCCcEEEcccCCccccccc-C-CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCccccc
Q 036269           20 IKAGVELKDWPSINTFEDLTGISLMFNDIHEVHEG-L-QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSL   97 (623)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~   97 (623)
                      ...+.++..+|. ...+.+++|++++|.++.+++. + .+++|++|++++|.+..+++..|.++++|++|++++|.+.  
T Consensus        13 ~c~~~~l~~ip~-~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~--   89 (570)
T 2z63_A           13 QCMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ--   89 (570)
T ss_dssp             ECCSSCCSSCCS-SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC--
T ss_pred             EeCCCCccccCC-CccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC--
Confidence            334456777774 4457899999999999988753 3 8999999999999998887777899999999999999984  


Q ss_pred             CCCchhhhccccCcEEeccCCcCCCCc--ccccCCcCCcEEEcCCCCCcc--ccccccCCCccCEEeccCCCCCCcCchh
Q 036269           98 FSLPSSLSFLINLRTLSLHDCQHFGDL--SLIGELSLLEILDLSESDVSE--IPVSFGRLGHLRLLDLTDCYNLELIPRG  173 (623)
Q Consensus        98 ~~lp~~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~--lp~~i~~l~~L~~L~l~~~~~~~~l~~~  173 (623)
                      ...|..+..+++|++|++++|. +..+  ..++++++|++|++++|.+..  +|..++++++|++|++++| .+..++..
T Consensus        90 ~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n-~l~~~~~~  167 (570)
T 2z63_A           90 SLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCT  167 (570)
T ss_dssp             EECTTTTTTCTTCCEEECTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS-CCCEECGG
T ss_pred             ccCHhhhcCccccccccccccc-cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCC-ccceecHH
Confidence            3344678999999999999998 8776  358999999999999999985  7899999999999999994 55666555


Q ss_pred             hhhccccC----cEEEecccccccccccccccccccccccccCCCCccEEEeecCCC--ccCCCc-ccccCccEEEEEeC
Q 036269          174 VLSRLRKL----EELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEG--EIMPSD-MSFQNLTSFSITIG  246 (623)
Q Consensus       174 ~~~~l~~L----~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~--~~~~~~-~~~~~L~~L~l~~~  246 (623)
                      .++.+.+|    +.+++++|.+..           ..+..+... +|+.|++++|..  ..++.. ..++.++...+...
T Consensus       168 ~~~~l~~L~~~~~~L~l~~n~l~~-----------~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~  235 (570)
T 2z63_A          168 DLRVLHQMPLLNLSLDLSLNPMNF-----------IQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG  235 (570)
T ss_dssp             GGHHHHTCTTCCCEEECTTCCCCE-----------ECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEE
T ss_pred             HccchhccchhhhhcccCCCCcee-----------cCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccc
Confidence            58888888    899999998732           223334433 799999988742  222222 45555655554432


Q ss_pred             CCCCCCc-chhhhhhhhcccccccceeeeccc-cccccchHHHHHHHhhceeEeecccCCcccccccccccCccCccEEE
Q 036269          247 GPEEVPL-SDFIEVFSRKFKKRCSRAMGLSQD-MRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLA  324 (623)
Q Consensus       247 ~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~  324 (623)
                      ....... ..+....+.......+..+.+... ...+..+.++... ++|+.|+++++.. ..+...+  ..+ +|++|+
T Consensus       236 ~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~l-~~l~~~~--~~~-~L~~L~  310 (570)
T 2z63_A          236 EFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCL-TNVSSFSLVSVTI-ERVKDFS--YNF-GWQHLE  310 (570)
T ss_dssp             ECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGG-TTCSEEEEESCEE-CSCCBCC--SCC-CCSEEE
T ss_pred             cccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCc-CcccEEEecCccc-hhhhhhh--ccC-CccEEe
Confidence            2110000 011111111112223344444433 2222344444444 8899999988763 3333333  345 899999


Q ss_pred             EecccCceeecccccccccccccccceeecccCcccccccccccCCCcCCCccEEEEeecCCccccc--chhHHHhcccc
Q 036269          325 IVGCNEMKYLLNSLERTLRVTLLKLEWLMIVDNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKIL--PSHLVQSFQNL  402 (623)
Q Consensus       325 l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--~~~~~~~l~~L  402 (623)
                      +++| .+..++       ...+++|+.|++.++..     ...++...+++|+.|++++| .++...  +. .+..+++|
T Consensus       311 l~~n-~~~~l~-------~~~l~~L~~L~l~~n~~-----~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~-~~~~~~~L  375 (570)
T 2z63_A          311 LVNC-KFGQFP-------TLKLKSLKRLTFTSNKG-----GNAFSEVDLPSLEFLDLSRN-GLSFKGCCSQ-SDFGTTSL  375 (570)
T ss_dssp             EESC-BCSSCC-------BCBCSSCCEEEEESCBS-----CCBCCCCBCTTCCEEECCSS-CCBEEEEEEH-HHHTCSCC
T ss_pred             eccC-cccccC-------cccccccCEEeCcCCcc-----ccccccccCCCCCEEeCcCC-ccCccccccc-cccccCcc
Confidence            9999 454443       24588999999999873     23344467899999999985 454422  33 37889999


Q ss_pred             ceEEEeccccceeeeeccceeccccccccccCccEEecCCccchhhcccCCCcccccCCccEEEEEcCCCcceeccCccc
Q 036269          403 QRLRVEGCELLVSVFEIERVNIAKEETELFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFCDELRQVFPANLG  482 (623)
Q Consensus       403 ~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~L~~L~l~~C~~l~~~~~~~l~  482 (623)
                      ++|++++ +.++.+         +..+..+++|++|++++|. ++.+.. ...+..+++|++|++++| .+...+|..+.
T Consensus       376 ~~L~l~~-n~l~~~---------~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~  442 (570)
T 2z63_A          376 KYLDLSF-NGVITM---------SSNFLGLEQLEHLDFQHSN-LKQMSE-FSVFLSLRNLIYLDISHT-HTRVAFNGIFN  442 (570)
T ss_dssp             CEEECCS-CSEEEE---------EEEEETCTTCCEEECTTSE-EESCTT-SCTTTTCTTCCEEECTTS-CCEECCTTTTT
T ss_pred             CEEECCC-Cccccc---------cccccccCCCCEEEccCCc-cccccc-hhhhhcCCCCCEEeCcCC-cccccchhhhh
Confidence            9999999 667666         3346789999999999984 443211 134567899999999996 56777788889


Q ss_pred             CcccchhhhhhcccccccceeccccCCCCCCCCCCccEEEEecCCCcceecchhhhhccCCCCEEEEccCCchhhhhcCC
Q 036269          483 KKAAAEEMVLYRNRRDQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSRCPTLQEIIMND  562 (623)
Q Consensus       483 ~~~~L~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~  562 (623)
                      .+++|++|++.+|..      .....|..+..+++|+.|++++| +++.+.+ ..+..+++|++|++++|. ++.++.. 
T Consensus       443 ~l~~L~~L~l~~n~l------~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~~-  512 (570)
T 2z63_A          443 GLSSLEVLKMAGNSF------QENFLPDIFTELRNLTFLDLSQC-QLEQLSP-TAFNSLSSLQVLNMASNQ-LKSVPDG-  512 (570)
T ss_dssp             TCTTCCEEECTTCEE------GGGEECSCCTTCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECCSSC-CSCCCTT-
T ss_pred             cCCcCcEEECcCCcC------ccccchhhhhcccCCCEEECCCC-ccccCCh-hhhhcccCCCEEeCCCCc-CCCCCHH-
Confidence            999999999998833      11356778889999999999996 5666644 346789999999999986 7666431 


Q ss_pred             CCcccCcCCCcceeecCcccceecccCcc
Q 036269          563 EGEVGLQGASTEKITFPSLFSIQLCLLDS  591 (623)
Q Consensus       563 ~~~~~~~~~~~~~~~l~~L~~L~l~~c~~  591 (623)
                                 ....+++|+.|++++++-
T Consensus       513 -----------~~~~l~~L~~L~l~~N~~  530 (570)
T 2z63_A          513 -----------IFDRLTSLQKIWLHTNPW  530 (570)
T ss_dssp             -----------TTTTCTTCCEEECCSSCB
T ss_pred             -----------HhhcccCCcEEEecCCcc
Confidence                       345778999999998653

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=2e-36  Score=324.64  Aligned_cols=487  Identities=18%  Similarity=0.186  Sum_probs=234.7

Q ss_pred             EcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCCcCC
Q 036269           42 SLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHF  121 (623)
Q Consensus        42 ~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l  121 (623)
                      +.+++.++.+|.... ++|++|++++|.+..+++..|.++++|++|++++|.+.  +..|..+..+++|++|++++|. +
T Consensus        11 ~~~~~~l~~ip~~~~-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~--~~~~~~~~~l~~L~~L~Ls~n~-l   86 (549)
T 2z81_A           11 DGRSRSFTSIPSGLT-AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN--TIEGDAFYSLGSLEHLDLSDNH-L   86 (549)
T ss_dssp             ECTTSCCSSCCSCCC-TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCC--EECTTTTTTCTTCCEEECTTSC-C
T ss_pred             ECCCCccccccccCC-CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcC--ccChhhccccccCCEEECCCCc-c
Confidence            444455555554332 45555555555555443333455555566665555552  2223445555556666665555 5


Q ss_pred             CCc--ccccCCcCCcEEEcCCCCCcc--ccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccccccccccc
Q 036269          122 GDL--SLIGELSLLEILDLSESDVSE--IPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFEN  197 (623)
Q Consensus       122 ~~i--~~~~~l~~L~~L~l~~~~i~~--lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~  197 (623)
                      ..+  ..++++++|++|++++|.++.  .|..++++++|++|++++|..++.+|...+.++++|++|++++|.+.     
T Consensus        87 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~-----  161 (549)
T 2z81_A           87 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR-----  161 (549)
T ss_dssp             CSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC-----
T ss_pred             CccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc-----
Confidence            443  235555556666666555552  24455556666666665544455555333555566666666555542     


Q ss_pred             ccccccccccccccCCCCccEEEeecCCCccCCCc--ccccCccEEEEEeCCCCCCCcchhhhhhhhcccccccceeeec
Q 036269          198 EDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSD--MSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSRAMGLS  275 (623)
Q Consensus       198 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~  275 (623)
                            ...+..++.+++|+.|++++|....++..  ..+++|+.|+++++.....+.....    .....+.++.+.+.
T Consensus       162 ------~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~----~~~~~~~L~~L~l~  231 (549)
T 2z81_A          162 ------NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLP----VDEVSSPMKKLAFR  231 (549)
T ss_dssp             ------EECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCS----SCCCCCCCCEEEEE
T ss_pred             ------ccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccc----hhhhhhcccceecc
Confidence                  23344555555566666655554444433  3355566666555543221100000    00011122222222


Q ss_pred             cccccccchHHHHHHHhhceeEeecccCCcccccccccccCccCccEEEEecccCceeecccc--cccccccccccceee
Q 036269          276 QDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSL--ERTLRVTLLKLEWLM  353 (623)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~--~~~~~~~~~~L~~L~  353 (623)
                      .+...+..+..+...                       ...+++|+.+++++| .+..+....  .......+++|+.|.
T Consensus       232 ~n~l~~~~~~~l~~~-----------------------~~~~~~L~~l~l~~~-~~~~~~~~~~~~~~~~~~l~~L~~L~  287 (549)
T 2z81_A          232 GSVLTDESFNELLKL-----------------------LRYILELSEVEFDDC-TLNGLGDFNPSESDVVSELGKVETVT  287 (549)
T ss_dssp             SCEEEHHHHHHHHGG-----------------------GGGCTTCCEEEEESC-EEECCSCCCCCTTTCCCCCTTCCEEE
T ss_pred             ccccchhHHHHHHHH-----------------------hhhhccccccccccc-cccccccccccchhhhhhhccccccc
Confidence            221111111111110                       022344555555544 121111000  000123344555555


Q ss_pred             cccCcccccc-cccccC--CCcCCCccEEEEeecCCcccccchhHHHhccccceEEEeccccceeeeeccceeccccccc
Q 036269          354 IVDNRNFVEI-CHGQLP--AGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEIERVNIAKEETE  430 (623)
Q Consensus       354 l~~~~~l~~~-~~~~~~--~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~  430 (623)
                      +.++. +..+ ....++  ...+++|+.|++++| .++. +|......+++|++|++++ +.++......     +..+.
T Consensus       288 l~~~~-i~~~~~~~~l~~~~~~~~~L~~L~l~~n-~l~~-ip~~~~~~l~~L~~L~Ls~-N~l~~~~~~~-----~~~~~  358 (549)
T 2z81_A          288 IRRLH-IPQFYLFYDLSTVYSLLEKVKRITVENS-KVFL-VPCSFSQHLKSLEFLDLSE-NLMVEEYLKN-----SACKG  358 (549)
T ss_dssp             EESCB-CSCGGGSCCCCHHHHHSTTCCEEEEESS-CCCC-CCHHHHHHCTTCCEEECCS-SCCCHHHHHH-----HTCTT
T ss_pred             ccccc-cchhhhcccchhhhhhcccceEEEeccC-cccc-CCHHHHhcCccccEEEccC-Cccccccccc-----hhhhh
Confidence            55443 1110 000000  012356777777764 3443 5555445677777777777 4444321000     11234


Q ss_pred             cccCccEEecCCccchhhcccCCCcccccCCccEEEEEcCCCcceeccCcccCcccchhhhhhcccccccceeccccCCC
Q 036269          431 LFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFCDELRQVFPANLGKKAAAEEMVLYRNRRDQIHIHATTSTSS  510 (623)
Q Consensus       431 ~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~L~~L~l~~C~~l~~~~~~~l~~~~~L~~l~~~~~~~~~l~~~~~~~~~~  510 (623)
                      .+++|++|++++| .++.+...+..+..+++|++|++++| +++.+ |..++.+++|++|++.+|....        +|.
T Consensus       359 ~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l-p~~~~~~~~L~~L~Ls~N~l~~--------l~~  427 (549)
T 2z81_A          359 AWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRN-TFHPM-PDSCQWPEKMRFLNLSSTGIRV--------VKT  427 (549)
T ss_dssp             SSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTC-CCCCC-CSCCCCCTTCCEEECTTSCCSC--------CCT
T ss_pred             ccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCC-CCccC-ChhhcccccccEEECCCCCccc--------ccc
Confidence            5677777777776 44443211122445677777777774 55544 5566666777777777664411        111


Q ss_pred             CCCCCCCccEEEEecCCCcceecchhhhhccCCCCEEEEccCCchhhhhcCCCCcccCcCCCcceeecCcccceecccCc
Q 036269          511 PTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSRCPTLQEIIMNDEGEVGLQGASTEKITFPSLFSIQLCLLD  590 (623)
Q Consensus       511 ~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~  590 (623)
                      .  ..++|+.|++++| +++.++     ..+++|++|++++|. ++.++              ....+++|+.|+++++ 
T Consensus       428 ~--~~~~L~~L~Ls~N-~l~~~~-----~~l~~L~~L~Ls~N~-l~~ip--------------~~~~l~~L~~L~Ls~N-  483 (549)
T 2z81_A          428 C--IPQTLEVLDVSNN-NLDSFS-----LFLPRLQELYISRNK-LKTLP--------------DASLFPVLLVMKISRN-  483 (549)
T ss_dssp             T--SCTTCSEEECCSS-CCSCCC-----CCCTTCCEEECCSSC-CSSCC--------------CGGGCTTCCEEECCSS-
T ss_pred             h--hcCCceEEECCCC-Chhhhc-----ccCChhcEEECCCCc-cCcCC--------------CcccCccCCEEecCCC-
Confidence            1  1256777777774 455542     356777777777775 65554              2234667777777775 


Q ss_pred             ccceecCCCCcceeecCCccEEEeccCC
Q 036269          591 SLTCFCSSGSHATVEFLALEALQIIDCP  618 (623)
Q Consensus       591 ~l~~~~~~~~~~~~~~~~L~~L~i~~c~  618 (623)
                      .++.++. +.  ...+++|+.|++.+++
T Consensus       484 ~l~~~~~-~~--~~~l~~L~~L~l~~N~  508 (549)
T 2z81_A          484 QLKSVPD-GI--FDRLTSLQKIWLHTNP  508 (549)
T ss_dssp             CCCCCCT-TG--GGGCTTCCEEECCSSC
T ss_pred             ccCCcCH-HH--HhcCcccCEEEecCCC
Confidence            4555443 21  1235677777776665

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=8.3e-35  Score=313.71  Aligned_cols=503  Identities=17%  Similarity=0.163  Sum_probs=360.2

Q ss_pred             CcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccC
Q 036269           38 LTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHD  117 (623)
Q Consensus        38 l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~  117 (623)
                      .+.++-++..++.+|.... +++++|++++|.+..++...|.++++|++|++++|.+.  +..|..+.++++|++|++++
T Consensus         9 ~~~~~c~~~~l~~ip~~l~-~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~--~i~~~~~~~l~~L~~L~L~~   85 (570)
T 2z63_A            9 NITYQCMELNFYKIPDNLP-FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ--TIEDGAYQSLSHLSTLILTG   85 (570)
T ss_dssp             TTEEECCSSCCSSCCSSSC-SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC--EECTTTTTTCTTCCEEECTT
T ss_pred             CcEEEeCCCCccccCCCcc-ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCC--ccCcccccCchhCCEEeCcC
Confidence            4567777778888887552 57999999999999777666899999999999999984  33346789999999999999


Q ss_pred             CcCCCCc--ccccCCcCCcEEEcCCCCCccccc-cccCCCccCEEeccCCCCCC-cCchhhhhccccCcEEEeccccccc
Q 036269          118 CQHFGDL--SLIGELSLLEILDLSESDVSEIPV-SFGRLGHLRLLDLTDCYNLE-LIPRGVLSRLRKLEELYMSKTFCHW  193 (623)
Q Consensus       118 ~~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~-~l~~~~~~~l~~L~~L~l~~~~~~~  193 (623)
                      |. +..+  ..++++++|++|++++|.++.+|. .++++++|++|++++|.... .+|.. ++++++|++|++++|.+. 
T Consensus        86 n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~l~~n~l~-  162 (570)
T 2z63_A           86 NP-IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQ-  162 (570)
T ss_dssp             CC-CCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECTTSCCC-
T ss_pred             Cc-CCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhh-hcccCCCCEEeCcCCccc-
Confidence            98 8766  578999999999999999998875 69999999999999954333 35765 899999999999999873 


Q ss_pred             ccccccccccccccccccCCCCc----cEEEeecCCCccCCCc-ccccCccEEEEEeCCCCCCCcchhhhhhhhcccccc
Q 036269          194 QFENEDDSRSNAKFIELGALSRL----TSLHIDIPEGEIMPSD-MSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRC  268 (623)
Q Consensus       194 ~~~~~~~~~~~~~~~~l~~l~~L----~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~  268 (623)
                                ...+..++.+++|    +.+++++|.+..++.. ....+|+.+++..+.....   .+... .  .....
T Consensus       163 ----------~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~---~~~~~-~--~~l~~  226 (570)
T 2z63_A          163 ----------SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLN---VMKTC-I--QGLAG  226 (570)
T ss_dssp             ----------EECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTT---HHHHH-H--HTTTT
T ss_pred             ----------eecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEeccccccccc---chhhh-h--cCccc
Confidence                      2334556666667    8999999998777655 3444799999987642211   01110 0  01122


Q ss_pred             cceeeecc-----ccccccchHHHHHHH--hhceeEeecccCCcccccccccccCccCccEEEEecccCceeeccccccc
Q 036269          269 SRAMGLSQ-----DMRISALPSWIKNLL--LRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERT  341 (623)
Q Consensus       269 l~~l~l~~-----~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~  341 (623)
                      ++...+..     ...+..++......+  -.++.+++.++..+....+.. ...+++|+.|+++++ .++.++.     
T Consensus       227 l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~-~~~l~~L~~L~l~~~-~l~~l~~-----  299 (570)
T 2z63_A          227 LEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDL-FNCLTNVSSFSLVSV-TIERVKD-----  299 (570)
T ss_dssp             CEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTT-TGGGTTCSEEEEESC-EECSCCB-----
T ss_pred             cceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhh-hcCcCcccEEEecCc-cchhhhh-----
Confidence            22222211     011111221111111  235666776664333333222 256899999999999 5555543     


Q ss_pred             ccccccccceeecccCcccccccccccCCCcCCCccEEEEeecCCcccccchhHHHhccccceEEEeccccceeeeeccc
Q 036269          342 LRVTLLKLEWLMIVDNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEIER  421 (623)
Q Consensus       342 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~  421 (623)
                      ....+ +|+.|++.++. +     ..+|.+.+++|+.|++++|.. ....+.   ..+++|++|++++ +.++.+...  
T Consensus       300 ~~~~~-~L~~L~l~~n~-~-----~~l~~~~l~~L~~L~l~~n~~-~~~~~~---~~~~~L~~L~l~~-n~l~~~~~~--  365 (570)
T 2z63_A          300 FSYNF-GWQHLELVNCK-F-----GQFPTLKLKSLKRLTFTSNKG-GNAFSE---VDLPSLEFLDLSR-NGLSFKGCC--  365 (570)
T ss_dssp             CCSCC-CCSEEEEESCB-C-----SSCCBCBCSSCCEEEEESCBS-CCBCCC---CBCTTCCEEECCS-SCCBEEEEE--
T ss_pred             hhccC-CccEEeeccCc-c-----cccCcccccccCEEeCcCCcc-cccccc---ccCCCCCEEeCcC-CccCccccc--
Confidence            23345 89999999987 2     245667889999999999654 333443   5789999999999 666654210  


Q ss_pred             eeccccccccccCccEEecCCccchhhcccCCCcccccCCccEEEEEcCCCcceecc-CcccCcccchhhhhhccccccc
Q 036269          422 VNIAKEETELFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFCDELRQVFP-ANLGKKAAAEEMVLYRNRRDQI  500 (623)
Q Consensus       422 ~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~L~~L~l~~C~~l~~~~~-~~l~~~~~L~~l~~~~~~~~~l  500 (623)
                          +..+..+++|++|++++| .++.+   +..+..+++|++|++++| .+...+| ..+..+++|++|++.+|..   
T Consensus       366 ----~~~~~~~~~L~~L~l~~n-~l~~~---~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l---  433 (570)
T 2z63_A          366 ----SQSDFGTTSLKYLDLSFN-GVITM---SSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHT---  433 (570)
T ss_dssp             ----EHHHHTCSCCCEEECCSC-SEEEE---EEEEETCTTCCEEECTTS-EEESCTTSCTTTTCTTCCEEECTTSCC---
T ss_pred             ----cccccccCccCEEECCCC-ccccc---cccccccCCCCEEEccCC-ccccccchhhhhcCCCCCEEeCcCCcc---
Confidence                345567899999999999 45554   233677999999999995 5555544 5678899999999999844   


Q ss_pred             ceeccccCCCCCCCCCCccEEEEecCCCc-ceecchhhhhccCCCCEEEEccCCchhhhhcCCCCcccCcCCCcceeecC
Q 036269          501 HIHATTSTSSPTPSLGNLVSITIRGCGKL-RNLFTTSMVKSLVRLESLEVSRCPTLQEIIMNDEGEVGLQGASTEKITFP  579 (623)
Q Consensus       501 ~~~~~~~~~~~~~~l~~L~~L~i~~c~~l-~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~  579 (623)
                          ....|..+..+++|+.|++++|.-. ..++  ..+..+++|++|++++|. ++.+...            ....++
T Consensus       434 ----~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p--~~~~~l~~L~~L~l~~n~-l~~~~~~------------~~~~l~  494 (570)
T 2z63_A          434 ----RVAFNGIFNGLSSLEVLKMAGNSFQENFLP--DIFTELRNLTFLDLSQCQ-LEQLSPT------------AFNSLS  494 (570)
T ss_dssp             ----EECCTTTTTTCTTCCEEECTTCEEGGGEEC--SCCTTCTTCCEEECTTSC-CCEECTT------------TTTTCT
T ss_pred             ----cccchhhhhcCCcCcEEECcCCcCccccch--hhhhcccCCCEEECCCCc-cccCChh------------hhhccc
Confidence                4556777889999999999997533 2444  347889999999999997 6655221            455789


Q ss_pred             cccceecccCcccceecCCCCcceeecCCccEEEeccCC
Q 036269          580 SLFSIQLCLLDSLTCFCSSGSHATVEFLALEALQIIDCP  618 (623)
Q Consensus       580 ~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~  618 (623)
                      +|++|++++| .++.++. +.  ...+++|++|++++++
T Consensus       495 ~L~~L~l~~n-~l~~~~~-~~--~~~l~~L~~L~l~~N~  529 (570)
T 2z63_A          495 SLQVLNMASN-QLKSVPD-GI--FDRLTSLQKIWLHTNP  529 (570)
T ss_dssp             TCCEEECCSS-CCSCCCT-TT--TTTCTTCCEEECCSSC
T ss_pred             CCCEEeCCCC-cCCCCCH-HH--hhcccCCcEEEecCCc
Confidence            9999999998 5666654 32  2247999999999864

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=4.7e-34  Score=320.08  Aligned_cols=489  Identities=19%  Similarity=0.188  Sum_probs=302.2

Q ss_pred             eeecCCCCCCCCCCCCCCCCcEEEcccCCcccccc-cC-CCCCcceEEccCCCCC-CCChhhHhCCCcccEEEccCCccc
Q 036269           19 LIKAGVELKDWPSINTFEDLTGISLMFNDIHEVHE-GL-QCPRLQALFLQKNDLL-DIPDPFFQGMKDLKVLDLGGSGVF   95 (623)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~-~l~~~~~~~l~~Lr~L~l~~~~~~   95 (623)
                      ....+.++..+|.  ..+++++|++++|.++.+++ .+ .+++|++|++++|... .+++..|.++++|++|++++|.+.
T Consensus         9 ~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~   86 (844)
T 3j0a_A            9 AFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY   86 (844)
T ss_dssp             EEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCC
T ss_pred             EEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCc
Confidence            3445667888887  67999999999999988754 44 8999999999999655 675666799999999999999995


Q ss_pred             ccCCCchhhhccccCcEEeccCCcCCCC-c-c--cccCCcCCcEEEcCCCCCccc--cccccCCCccCEEeccCCCCCCc
Q 036269           96 SLFSLPSSLSFLINLRTLSLHDCQHFGD-L-S--LIGELSLLEILDLSESDVSEI--PVSFGRLGHLRLLDLTDCYNLEL  169 (623)
Q Consensus        96 ~~~~lp~~~~~l~~L~~L~l~~~~~l~~-i-~--~~~~l~~L~~L~l~~~~i~~l--p~~i~~l~~L~~L~l~~~~~~~~  169 (623)
                        ...|..+.++++|++|++++|. +.+ + .  .++++++|++|++++|.+..+  +..++++++|++|++++|.....
T Consensus        87 --~~~p~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~  163 (844)
T 3j0a_A           87 --FLHPDAFQGLFHLFELRLYFCG-LSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV  163 (844)
T ss_dssp             --EECTTSSCSCSSCCCEECTTCC-CSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred             --ccCHhHccCCcccCEeeCcCCC-CCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence              4558889999999999999998 754 3 3  389999999999999999865  35799999999999999544444


Q ss_pred             Cchhhhhcc--ccCcEEEecccccccccccccccccccccccccCCCC------ccEEEeecCCCc-cCCCc----cccc
Q 036269          170 IPRGVLSRL--RKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSR------LTSLHIDIPEGE-IMPSD----MSFQ  236 (623)
Q Consensus       170 l~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~------L~~L~l~~~~~~-~~~~~----~~~~  236 (623)
                      .+.. +..+  ++|+.|++++|.+.           ...+..++.+.+      |+.|++++|.+. ..+..    ....
T Consensus       164 ~~~~-l~~l~~~~L~~L~L~~n~l~-----------~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~  231 (844)
T 3j0a_A          164 CEHE-LEPLQGKTLSFFSLAANSLY-----------SRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKS  231 (844)
T ss_dssp             CSGG-GHHHHHCSSCCCEECCSBSC-----------CCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSC
T ss_pred             CHHH-cccccCCccceEECCCCccc-----------cccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcc
Confidence            4444 7777  89999999999874           233344444443      999999998643 22222    2234


Q ss_pred             CccEEEEEeCCCCC-CCcc---hhhhhhhhcccccccceeeeccccccccchHHHHHHHhhceeEeecccCCcccccccc
Q 036269          237 NLTSFSITIGGPEE-VPLS---DFIEVFSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDL  312 (623)
Q Consensus       237 ~L~~L~l~~~~~~~-~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  312 (623)
                      ++..+.+..+.... +...   ......+.....+.++.+.+..+...+..+..+..+ ++|+.|++++|......... 
T Consensus       232 ~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~i~~~~~~~-  309 (844)
T 3j0a_A          232 QAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETL-KDLKVLNLAYNKINKIADEA-  309 (844)
T ss_dssp             CBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSC-CCCCEEEEESCCCCEECTTT-
T ss_pred             cccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcC-CCCCEEECCCCcCCCCChHH-
Confidence            56666654221100 0000   011111112234567777777655433333333333 78888888877643222222 


Q ss_pred             cccCccCccEEEEecccCceeecccccccccccccccceeecccCcccccccccccCCCcCCCccEEEEeecCCcccccc
Q 036269          313 AHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLLKLEWLMIVDNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILP  392 (623)
Q Consensus       313 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~  392 (623)
                       +..+++|+.|++++| .++.+...    ....+++|+.|+++++. +..+....  ...+++|+.|++++| .++. ++
T Consensus       310 -~~~l~~L~~L~Ls~N-~l~~~~~~----~~~~l~~L~~L~L~~N~-i~~~~~~~--~~~l~~L~~L~Ls~N-~l~~-i~  378 (844)
T 3j0a_A          310 -FYGLDNLQVLNLSYN-LLGELYSS----NFYGLPKVAYIDLQKNH-IAIIQDQT--FKFLEKLQTLDLRDN-ALTT-IH  378 (844)
T ss_dssp             -TTTCSSCCEEEEESC-CCSCCCSC----SCSSCTTCCEEECCSCC-CCCCCSSC--SCSCCCCCEEEEETC-CSCC-CS
T ss_pred             -hcCCCCCCEEECCCC-CCCccCHH----HhcCCCCCCEEECCCCC-CCccChhh--hcCCCCCCEEECCCC-CCCc-cc
Confidence             256788888888888 45444322    45567888888888875 43322111  245788888888874 4543 22


Q ss_pred             hhHHHhccccceEEEeccccceeeeeccc-----------ee--ccccccccccCccEEecCCccchhhcccCCCccccc
Q 036269          393 SHLVQSFQNLQRLRVEGCELLVSVFEIER-----------VN--IAKEETELFSSLEKLTLIGLPRMTDIWKGDTQFVSL  459 (623)
Q Consensus       393 ~~~~~~l~~L~~L~l~~c~~l~~i~~~~~-----------~~--~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~l  459 (623)
                           .+++|+.|++++ +.++.+.....           ..  .....+..+++|++|++++| .++.+.. ......+
T Consensus       379 -----~~~~L~~L~l~~-N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~~~  450 (844)
T 3j0a_A          379 -----FIPSIPDIFLSG-NKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQN-RFSSCSG-DQTPSEN  450 (844)
T ss_dssp             -----SCCSCSEEEEES-CCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESC-CCCCCCS-SSSSCSC
T ss_pred             -----CCCCcchhccCC-CCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCC-ccccccc-ccccccC
Confidence                 257788888887 56655421000           00  00001224556666666655 3333211 1112235


Q ss_pred             CCccEEEEEcCCCcc-----eeccCcccCcccchhhhhhcccccccceeccccCCCCCCCCCCccEEEEecCCCcceecc
Q 036269          460 HDLKKIRVVFCDELR-----QVFPANLGKKAAAEEMVLYRNRRDQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFT  534 (623)
Q Consensus       460 ~~L~~L~l~~C~~l~-----~~~~~~l~~~~~L~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~  534 (623)
                      ++|+.|+++++ .++     ...+..+..+++|+.|++.+|..       .+..|..+..+++|+.|++++ ++++.+++
T Consensus       451 ~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-------~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~  521 (844)
T 3j0a_A          451 PSLEQLFLGEN-MLQLAWETELCWDVFEGLSHLQVLYLNHNYL-------NSLPPGVFSHLTALRGLSLNS-NRLTVLSH  521 (844)
T ss_dssp             TTCCBCEEESC-CCSSSCCSCCCSSCSSCBCCEECCCCCHHHH-------TTCCTTSSSSCCSCSEEEEES-CCCSSCCC
T ss_pred             CccccccCCCC-ccccccccccchhhhcCcccccEEECCCCcc-------cccChhHccchhhhheeECCC-CCCCccCh
Confidence            56666666653 333     22233445556666666666533       333344455666666666666 35555544


Q ss_pred             hhhhhccCCCCEEEEccCCchhhh
Q 036269          535 TSMVKSLVRLESLEVSRCPTLQEI  558 (623)
Q Consensus       535 ~~~~~~l~~L~~L~i~~c~~l~~l  558 (623)
                      .. +.  ++|+.|++++|. ++.+
T Consensus       522 ~~-~~--~~L~~L~Ls~N~-l~~~  541 (844)
T 3j0a_A          522 ND-LP--ANLEILDISRNQ-LLAP  541 (844)
T ss_dssp             CC-CC--SCCCEEEEEEEC-CCCC
T ss_pred             hh-hh--ccccEEECCCCc-CCCC
Confidence            31 11  566666666655 4443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=7.3e-34  Score=318.54  Aligned_cols=504  Identities=17%  Similarity=0.132  Sum_probs=351.1

Q ss_pred             cEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCC-chhhhccccCcEEeccC
Q 036269           39 TGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSL-PSSLSFLINLRTLSLHD  117 (623)
Q Consensus        39 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~l-p~~~~~l~~L~~L~l~~  117 (623)
                      +..+.+++.++.+|.  -.+++++|++++|.+..+++..|.++++|++|++++|...  ..+ |..+.++++|++|++++
T Consensus         7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~--~~i~~~~f~~L~~L~~L~Ls~   82 (844)
T 3j0a_A            7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTP--LTIDKEAFRNLPNLRILDLGS   82 (844)
T ss_dssp             EEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCC--CEECTTTTSSCTTCCEEECTT
T ss_pred             eEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCc--cccCHHHhcCCCCCCEEECCC
Confidence            567888899999998  4578999999999999665555799999999999999654  566 67799999999999999


Q ss_pred             CcCCCCc--ccccCCcCCcEEEcCCCCCcc-cccc--ccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecccccc
Q 036269          118 CQHFGDL--SLIGELSLLEILDLSESDVSE-IPVS--FGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCH  192 (623)
Q Consensus       118 ~~~l~~i--~~~~~l~~L~~L~l~~~~i~~-lp~~--i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~  192 (623)
                      |. +..+  ..++++++|++|++++|.+.. +|..  ++++++|++|++++|...+..+...++++++|++|++++|.+.
T Consensus        83 N~-l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~  161 (844)
T 3j0a_A           83 SK-IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF  161 (844)
T ss_dssp             CC-CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred             Cc-CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence            99 8665  689999999999999999984 5554  8999999999999965444334344899999999999999873


Q ss_pred             cccccccccccccccccccCC--CCccEEEeecCCCccC-CCc-cccc------CccEEEEEeCCCCCCCcchhhhhhhh
Q 036269          193 WQFENEDDSRSNAKFIELGAL--SRLTSLHIDIPEGEIM-PSD-MSFQ------NLTSFSITIGGPEEVPLSDFIEVFSR  262 (623)
Q Consensus       193 ~~~~~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~-~~~-~~~~------~L~~L~l~~~~~~~~~~~~~~~~~~~  262 (623)
                                 ...+..++.+  ++|+.|++++|.+... +.. ..+.      .|+.|+++.+.........+..    
T Consensus       162 -----------~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~----  226 (844)
T 3j0a_A          162 -----------LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSN----  226 (844)
T ss_dssp             -----------CCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGG----
T ss_pred             -----------eeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHh----
Confidence                       3344555555  7899999999875432 222 3333      3899999887543322222221    


Q ss_pred             cccccccceeeecccc--------ccccc-hHHHHHH-HhhceeEeecccCCcccccccccccCccCccEEEEecccCce
Q 036269          263 KFKKRCSRAMGLSQDM--------RISAL-PSWIKNL-LLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMK  332 (623)
Q Consensus       263 ~~~~~~l~~l~l~~~~--------~~~~~-~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~  332 (623)
                      ......+..+.+....        .+... +..+... .++++.|+++++.........  +..+++|+.|++++| .+.
T Consensus       227 ~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~L~~n-~i~  303 (844)
T 3j0a_A          227 AISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV--FETLKDLKVLNLAYN-KIN  303 (844)
T ss_dssp             TSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCC--SSSCCCCCEEEEESC-CCC
T ss_pred             hcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhh--hhcCCCCCEEECCCC-cCC
Confidence            1122334444433100        00000 1111111 268999999988743322222  367899999999999 666


Q ss_pred             eecccccccccccccccceeecccCcccccccccccCCCcCCCccEEEEeecCCcccccchhHHHhccccceEEEecccc
Q 036269          333 YLLNSLERTLRVTLLKLEWLMIVDNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCEL  412 (623)
Q Consensus       333 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~  412 (623)
                      .+...    ....+++|+.|+++++. +..+....  .+.+++|+.|++++| .++. ++...+..+++|+.|++++ +.
T Consensus       304 ~~~~~----~~~~l~~L~~L~Ls~N~-l~~~~~~~--~~~l~~L~~L~L~~N-~i~~-~~~~~~~~l~~L~~L~Ls~-N~  373 (844)
T 3j0a_A          304 KIADE----AFYGLDNLQVLNLSYNL-LGELYSSN--FYGLPKVAYIDLQKN-HIAI-IQDQTFKFLEKLQTLDLRD-NA  373 (844)
T ss_dssp             EECTT----TTTTCSSCCEEEEESCC-CSCCCSCS--CSSCTTCCEEECCSC-CCCC-CCSSCSCSCCCCCEEEEET-CC
T ss_pred             CCChH----HhcCCCCCCEEECCCCC-CCccCHHH--hcCCCCCCEEECCCC-CCCc-cChhhhcCCCCCCEEECCC-CC
Confidence            55433    45668999999999986 43322222  347899999999995 6665 4443467899999999999 67


Q ss_pred             ceeeeeccceeccccccccccCccEEecCCccchhhcccCC-------------------CcccccCCccEEEEEcCCCc
Q 036269          413 LVSVFEIERVNIAKEETELFSSLEKLTLIGLPRMTDIWKGD-------------------TQFVSLHDLKKIRVVFCDEL  473 (623)
Q Consensus       413 l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~-------------------~~~~~l~~L~~L~l~~C~~l  473 (623)
                      ++.+.             .+++|+.|++++| .++.++...                   .....+++|++|+++++ ++
T Consensus       374 l~~i~-------------~~~~L~~L~l~~N-~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N-~l  438 (844)
T 3j0a_A          374 LTTIH-------------FIPSIPDIFLSGN-KLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQN-RF  438 (844)
T ss_dssp             SCCCS-------------SCCSCSEEEEESC-CCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESC-CC
T ss_pred             CCccc-------------CCCCcchhccCCC-CcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCC-cc
Confidence            76542             2556666666655 333332110                   11236889999999994 56


Q ss_pred             ceeccC-cccCcccchhhhhhcccccccceecc--ccCCCCCCCCCCccEEEEecCCCcceecchhhhhccCCCCEEEEc
Q 036269          474 RQVFPA-NLGKKAAAEEMVLYRNRRDQIHIHAT--TSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVS  550 (623)
Q Consensus       474 ~~~~~~-~l~~~~~L~~l~~~~~~~~~l~~~~~--~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~i~  550 (623)
                      +.+.+. ....+++|+.|++.+|...    .++  ...+..+..+++|+.|++++| +++.+++ ..+.++++|++|+++
T Consensus       439 ~~~~~~~~~~~~~~L~~L~Ls~N~l~----~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~Ls  512 (844)
T 3j0a_A          439 SSCSGDQTPSENPSLEQLFLGENMLQ----LAWETELCWDVFEGLSHLQVLYLNHN-YLNSLPP-GVFSHLTALRGLSLN  512 (844)
T ss_dssp             CCCCSSSSSCSCTTCCBCEEESCCCS----SSCCSCCCSSCSSCBCCEECCCCCHH-HHTTCCT-TSSSSCCSCSEEEEE
T ss_pred             cccccccccccCCccccccCCCCccc----cccccccchhhhcCcccccEEECCCC-cccccCh-hHccchhhhheeECC
Confidence            655333 3456889999999988551    122  223455778899999999995 7887755 456889999999999


Q ss_pred             cCCchhhhhcCCCCcccCcCCCcceeecCcccceecccCcccceecCCCCcceeecCCccEEEeccCC
Q 036269          551 RCPTLQEIIMNDEGEVGLQGASTEKITFPSLFSIQLCLLDSLTCFCSSGSHATVEFLALEALQIIDCP  618 (623)
Q Consensus       551 ~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~  618 (623)
                      +|. ++.++..              ...++|+.|+++++ .++.... .     .+++|+.|++.+.|
T Consensus       513 ~N~-l~~l~~~--------------~~~~~L~~L~Ls~N-~l~~~~~-~-----~~~~L~~l~l~~Np  558 (844)
T 3j0a_A          513 SNR-LTVLSHN--------------DLPANLEILDISRN-QLLAPNP-D-----VFVSLSVLDITHNK  558 (844)
T ss_dssp             SCC-CSSCCCC--------------CCCSCCCEEEEEEE-CCCCCCS-C-----CCSSCCEEEEEEEC
T ss_pred             CCC-CCccChh--------------hhhccccEEECCCC-cCCCCCh-h-----HhCCcCEEEecCCC
Confidence            996 8777531              12278999999986 4554433 2     25789999988754

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=2.5e-32  Score=292.74  Aligned_cols=207  Identities=22%  Similarity=0.270  Sum_probs=168.2

Q ss_pred             CCCCCCCCCCCCCCCCcEEEcccCCcccccc-cC-CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCC
Q 036269           23 GVELKDWPSINTFEDLTGISLMFNDIHEVHE-GL-QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSL  100 (623)
Q Consensus        23 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~l  100 (623)
                      ++.+..+|. ...+++++|++++|.++.+++ .+ .+++|++|++++|.+..+++..|.++++|++|++++|.+   ..+
T Consensus        14 ~~~l~~ip~-~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l---~~~   89 (549)
T 2z81_A           14 SRSFTSIPS-GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL---SSL   89 (549)
T ss_dssp             TSCCSSCCS-CCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC---CSC
T ss_pred             CCccccccc-cCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCcc---Ccc
Confidence            456777775 445899999999999988754 34 899999999999999977766679999999999999999   455


Q ss_pred             ch-hhhccccCcEEeccCCcCCCCc---ccccCCcCCcEEEcCCCC-Ccccc-ccccCCCccCEEeccCCCCCCcCchhh
Q 036269          101 PS-SLSFLINLRTLSLHDCQHFGDL---SLIGELSLLEILDLSESD-VSEIP-VSFGRLGHLRLLDLTDCYNLELIPRGV  174 (623)
Q Consensus       101 p~-~~~~l~~L~~L~l~~~~~l~~i---~~~~~l~~L~~L~l~~~~-i~~lp-~~i~~l~~L~~L~l~~~~~~~~l~~~~  174 (623)
                      +. .+..+++|++|++++|. +..+   ..++++++|++|++++|. +..+| ..+.++++|++|++++|...+..|.. 
T Consensus        90 ~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-  167 (549)
T 2z81_A           90 SSSWFGPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-  167 (549)
T ss_dssp             CHHHHTTCTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-
T ss_pred             CHHHhccCCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-
Confidence            54 59999999999999998 8643   578999999999999998 66776 57999999999999996554455654 


Q ss_pred             hhccccCcEEEeccccccccccccccccccccccc-ccCCCCccEEEeecCCCccCC---C--cccccCccEEEEEeCC
Q 036269          175 LSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIE-LGALSRLTSLHIDIPEGEIMP---S--DMSFQNLTSFSITIGG  247 (623)
Q Consensus       175 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~---~--~~~~~~L~~L~l~~~~  247 (623)
                      +..+++|++|++.+|...            ..+.. ++.+++|+.|++++|.+..++   .  ...+++|+.+++.++.
T Consensus       168 l~~l~~L~~L~l~~n~~~------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~  234 (549)
T 2z81_A          168 LKSIRDIHHLTLHLSESA------------FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV  234 (549)
T ss_dssp             TTTCSEEEEEEEECSBST------------THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCE
T ss_pred             hhccccCceEecccCccc------------ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccc
Confidence            899999999999988762            22222 356899999999999876542   1  1567889999998764

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=2.8e-31  Score=290.20  Aligned_cols=521  Identities=18%  Similarity=0.161  Sum_probs=331.3

Q ss_pred             CCCCCCCCCCCCCCCCcEEEcccCCccccccc-C-CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCC
Q 036269           23 GVELKDWPSINTFEDLTGISLMFNDIHEVHEG-L-QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSL  100 (623)
Q Consensus        23 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~l  100 (623)
                      +.++..+|. ...+.+++|++++|.++.+++. + ++++|++|+|++|.+..+++++|.++++|++|++++|.+   ..+
T Consensus        40 ~~~l~~vP~-~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l---~~l  115 (635)
T 4g8a_A           40 ELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI---QSL  115 (635)
T ss_dssp             TSCCSSCCS-SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC---CEE
T ss_pred             CCCcCccCC-CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC---CCC
Confidence            456777773 3446899999999999988764 3 889999999999999888887789999999999999998   566


Q ss_pred             ch-hhhccccCcEEeccCCcCCCCc--ccccCCcCCcEEEcCCCCCc--cccccccCCCccCEEeccCCCCCCcCchhhh
Q 036269          101 PS-SLSFLINLRTLSLHDCQHFGDL--SLIGELSLLEILDLSESDVS--EIPVSFGRLGHLRLLDLTDCYNLELIPRGVL  175 (623)
Q Consensus       101 p~-~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~L~~L~l~~~~i~--~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~  175 (623)
                      |. .|.++++|++|++++|. +..+  ..++++++|++|++++|.++  .+|..++.+++|++|++++ +.+..++...+
T Consensus       116 ~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~l  193 (635)
T 4g8a_A          116 ALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS-NKIQSIYCTDL  193 (635)
T ss_dssp             CGGGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS-SCCCEECGGGG
T ss_pred             CHHHhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccC-ccccccccccc
Confidence            64 57889999999999998 8777  35889999999999999887  4567888899999999998 45555554446


Q ss_pred             hccccCc----EEEecccccccccccccccccccccccccCCCCccEEEeecCCCc-cCCCc--ccccCccEEEEEeCCC
Q 036269          176 SRLRKLE----ELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGE-IMPSD--MSFQNLTSFSITIGGP  248 (623)
Q Consensus       176 ~~l~~L~----~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~--~~~~~L~~L~l~~~~~  248 (623)
                      ..+.+++    .++++.|.+.            .+.........++.+++..+... .+...  ..+..++...+.....
T Consensus       194 ~~L~~l~~~~~~~~ls~n~l~------------~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~  261 (635)
T 4g8a_A          194 RVLHQMPLLNLSLDLSLNPMN------------FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF  261 (635)
T ss_dssp             HHHHTCTTCCCEEECTTCCCC------------EECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECC
T ss_pred             cchhhhhhhhhhhhcccCccc------------ccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccc
Confidence            6655544    4666666652            22222333334566666665421 11111  3444555444443221


Q ss_pred             CCCCc-chhhhhhhhcccccccceeeecc---ccccccchHHHHHHHhhceeEeecccCCcccccccccccCccCccEEE
Q 036269          249 EEVPL-SDFIEVFSRKFKKRCSRAMGLSQ---DMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLA  324 (623)
Q Consensus       249 ~~~~~-~~~~~~~~~~~~~~~l~~l~l~~---~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~  324 (623)
                      ..... .........  ....+....+..   ..........+. ...+++.+.+.++....  ...+  .....++.|+
T Consensus       262 ~~~~~l~~~~~~~~~--~~~~l~~~~l~~~~~~~~~~~~~~~~~-~~~~l~~l~~~~~~~~~--~~~~--~~~~~L~~L~  334 (635)
T 4g8a_A          262 RNEGNLEKFDKSALE--GLCNLTIEEFRLAYLDYYLDGIIDLFN-CLTNVSSFSLVSVTIER--VKDF--SYNFGWQHLE  334 (635)
T ss_dssp             TTSCCCSCCCTTTTG--GGGGSEEEEEEEECCCSCEEECTTTTG-GGTTCSEEEEESCEEEE--CGGG--GSCCCCSEEE
T ss_pred             ccccccccccccccc--cccchhhhhhhhhhhcccccchhhhhh-hhccccccccccccccc--cccc--ccchhhhhhh
Confidence            11000 000000000  111111111111   000111111111 12566667666554211  1111  3456788888


Q ss_pred             EecccCceeecccccccccccccccceeecccCcccccccccccCCCcCCCccEEEEeecCCcccccchhHHHhccccce
Q 036269          325 IVGCNEMKYLLNSLERTLRVTLLKLEWLMIVDNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQR  404 (623)
Q Consensus       325 l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~  404 (623)
                      +.++ .+..+       ....++.|+.+.+.++..     ........+++|+.++++++..............+.+|++
T Consensus       335 l~~~-~~~~~-------~~~~l~~L~~l~l~~n~~-----~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~  401 (635)
T 4g8a_A          335 LVNC-KFGQF-------PTLKLKSLKRLTFTSNKG-----GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKY  401 (635)
T ss_dssp             EESC-EESSC-------CCCBCTTCCEEEEESCCS-----CCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCE
T ss_pred             cccc-cccCc-------CcccchhhhhcccccccC-----CCCcccccccccccchhhccccccccccccchhhhhhhhh
Confidence            8887 33222       223466777777776652     1223334678899999987433221122223667788999


Q ss_pred             EEEeccccceeeeeccceeccccccccccCccEEecCCccchhhcccCCCcccccCCccEEEEEcCCCcceeccCcccCc
Q 036269          405 LRVEGCELLVSVFEIERVNIAKEETELFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFCDELRQVFPANLGKK  484 (623)
Q Consensus       405 L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~L~~L~l~~C~~l~~~~~~~l~~~  484 (623)
                      +++.. +.+..+         +..+..+++|+.+++..+......  ....+..+++++.+++++ +.+....+..+..+
T Consensus       402 L~~~~-~~~~~~---------~~~~~~l~~L~~l~l~~~~~~~~~--~~~~~~~l~~l~~l~ls~-n~l~~~~~~~~~~~  468 (635)
T 4g8a_A          402 LDLSF-NGVITM---------SSNFLGLEQLEHLDFQHSNLKQMS--EFSVFLSLRNLIYLDISH-THTRVAFNGIFNGL  468 (635)
T ss_dssp             EECCS-CSEEEE---------CSCCTTCTTCCEEECTTSEEESTT--SSCTTTTCTTCCEEECTT-SCCEECCTTTTTTC
T ss_pred             hhccc-cccccc---------cccccccccccchhhhhccccccc--cccccccccccccccccc-cccccccccccccc
Confidence            98888 444443         445567889999999887554432  123455688899999888 56777778888888


Q ss_pred             ccchhhhhhcccccccceeccccCCCCCCCCCCccEEEEecCCCcceecchhhhhccCCCCEEEEccCCchhhhhcCCCC
Q 036269          485 AAAEEMVLYRNRRDQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSRCPTLQEIIMNDEG  564 (623)
Q Consensus       485 ~~L~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~  564 (623)
                      ++++.|++.+|.      ......|..+..+++|+.|++++| +++.+++ ..+.++++|++|++++|. |+.++..   
T Consensus       469 ~~L~~L~Ls~N~------~~~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~-~~f~~l~~L~~L~Ls~N~-l~~l~~~---  536 (635)
T 4g8a_A          469 SSLEVLKMAGNS------FQENFLPDIFTELRNLTFLDLSQC-QLEQLSP-TAFNSLSSLQVLNMSHNN-FFSLDTF---  536 (635)
T ss_dssp             TTCCEEECTTCE------EGGGEECSCCTTCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECTTSC-CCBCCCG---
T ss_pred             hhhhhhhhhhcc------cccccCchhhhhccccCEEECCCC-ccCCcCh-HHHcCCCCCCEEECCCCc-CCCCChh---
Confidence            999999988873      233345667788899999999995 7888755 357889999999999986 7666421   


Q ss_pred             cccCcCCCcceeecCcccceecccCcccceecCCCCcceeecCCccEEEeccCC
Q 036269          565 EVGLQGASTEKITFPSLFSIQLCLLDSLTCFCSSGSHATVEFLALEALQIIDCP  618 (623)
Q Consensus       565 ~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~  618 (623)
                               ....+++|+.|+++++ +++.+.. +.. ...+++|+.|+++++|
T Consensus       537 ---------~~~~l~~L~~L~Ls~N-~l~~~~~-~~l-~~l~~~L~~L~L~~Np  578 (635)
T 4g8a_A          537 ---------PYKCLNSLQVLDYSLN-HIMTSKK-QEL-QHFPSSLAFLNLTQND  578 (635)
T ss_dssp             ---------GGTTCTTCCEEECTTS-CCCBCCS-SCT-TCCCTTCCEEECTTCC
T ss_pred             ---------HHhCCCCCCEEECCCC-cCCCCCH-HHH-HhhhCcCCEEEeeCCC
Confidence                     3456789999999886 5555544 222 1113689999997654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.7e-31  Score=284.05  Aligned_cols=460  Identities=15%  Similarity=0.118  Sum_probs=289.1

Q ss_pred             cEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCC
Q 036269           39 TGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDC  118 (623)
Q Consensus        39 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~  118 (623)
                      ++++++++.++.+|..+. ++|++|++++|.+..+++..|.++++|++|++++|.+.  +..|..+..+++|++|++++|
T Consensus         3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~N   79 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ--YLDISVFKFNQELEYLDLSHN   79 (520)
T ss_dssp             CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCC--EEEGGGGTTCTTCCEEECCSS
T ss_pred             ceEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCCccC--CcChHHhhcccCCCEEecCCC
Confidence            679999999999997665 89999999999999888777899999999999999994  444778999999999999999


Q ss_pred             cCCCCcccccCCcCCcEEEcCCCCCcc--ccccccCCCccCEEeccCCCCCCcCchhhhhccccC--cEEEecccccccc
Q 036269          119 QHFGDLSLIGELSLLEILDLSESDVSE--IPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKL--EELYMSKTFCHWQ  194 (623)
Q Consensus       119 ~~l~~i~~~~~l~~L~~L~l~~~~i~~--lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L--~~L~l~~~~~~~~  194 (623)
                      . ++.++.. .+++|++|++++|.++.  +|..++++++|++|++++|. +..   ..+..+++|  +.|++++|.+.. 
T Consensus        80 ~-l~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~---~~~~~l~~L~L~~L~l~~n~l~~-  152 (520)
T 2z7x_B           80 K-LVKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK---SSVLPIAHLNISKVLLVLGETYG-  152 (520)
T ss_dssp             C-CCEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG---GGGGGGTTSCEEEEEEEECTTTT-
T ss_pred             c-eeecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cch---hhccccccceeeEEEeecccccc-
Confidence            8 8888544 89999999999999985  57899999999999999954 443   227778888  999999987621 


Q ss_pred             cccccccccccccccccCCCC-ccEEEeecCCC-ccCCCc--ccccCccEEEEEeCCCCCCCcchhhhhhhhcccccccc
Q 036269          195 FENEDDSRSNAKFIELGALSR-LTSLHIDIPEG-EIMPSD--MSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSR  270 (623)
Q Consensus       195 ~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~-~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~  270 (623)
                              ....+..++.+.. .-.+++++|.. ..++..  ..+++|+.++++.+.....- ..+......-...+.++
T Consensus       153 --------~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~l~~l~~L~  223 (520)
T 2z7x_B          153 --------EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKC-SYFLSILAKLQTNPKLS  223 (520)
T ss_dssp             --------SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTT-HHHHHHHHGGGGCTTCC
T ss_pred             --------cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecccccccccccc-ceeecchhhhccccchh
Confidence                    1233445555542 22345555553 333333  56788888888876421000 01111111112455667


Q ss_pred             eeeeccccccccchHHHHHH--HhhceeEeecccCCccccccccc---ccCccCccEEEEecccCceeeccccccccccc
Q 036269          271 AMGLSQDMRISALPSWIKNL--LLRSEILALGDVNDLENIVSDLA---HDGFNELMFLAIVGCNEMKYLLNSLERTLRVT  345 (623)
Q Consensus       271 ~l~l~~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~  345 (623)
                      .+.+..+...+..+..+...  .++|++|++++|.....++..+.   ...+++|+.++++++. + .++..    ....
T Consensus       224 ~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~-~-~~p~~----~~~~  297 (520)
T 2z7x_B          224 NLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDV-F-GFPQS----YIYE  297 (520)
T ss_dssp             EEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECC-C-CSCTH----HHHH
T ss_pred             hccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccc-e-ecchh----hhhc
Confidence            77776544332222222211  14788888877753322222210   1456777777777773 3 33211    1111


Q ss_pred             c---cccceeecccCcccccccccccCCCcCCCccEEEEeecCCcccccchhHHHhccccceEEEeccccceeeeeccce
Q 036269          346 L---LKLEWLMIVDNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEIERV  422 (623)
Q Consensus       346 ~---~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~  422 (623)
                      +   ++|+.|+++++. +...   .+ .+.+++|+.|++++| .+++..|.. +..+++|++|++++ +.++++..   .
T Consensus       298 ~~~~~~L~~L~l~~n~-l~~~---~~-~~~l~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~L~~-N~l~~l~~---~  366 (520)
T 2z7x_B          298 IFSNMNIKNFTVSGTR-MVHM---LC-PSKISPFLHLDFSNN-LLTDTVFEN-CGHLTELETLILQM-NQLKELSK---I  366 (520)
T ss_dssp             HHHTCCCSEEEEESSC-CCCC---CC-CSSCCCCCEEECCSS-CCCTTTTTT-CCCCSSCCEEECCS-SCCCBHHH---H
T ss_pred             ccccCceeEEEcCCCc-cccc---cc-hhhCCcccEEEeECC-ccChhhhhh-hccCCCCCEEEccC-CccCcccc---c
Confidence            1   458888888776 2211   11 146778888888874 455544544 56778888888888 56654310   0


Q ss_pred             eccccccccccCccEEecCCccchhh-cccCCCcccccCCccEEEEEcCCCcceeccCcccCcccchhhhhhcccccccc
Q 036269          423 NIAKEETELFSSLEKLTLIGLPRMTD-IWKGDTQFVSLHDLKKIRVVFCDELRQVFPANLGKKAAAEEMVLYRNRRDQIH  501 (623)
Q Consensus       423 ~~~~~~~~~~~~L~~L~l~~c~~l~~-i~~~~~~~~~l~~L~~L~l~~C~~l~~~~~~~l~~~~~L~~l~~~~~~~~~l~  501 (623)
                         +..+..+++|++|++++|. ++. ++..  .+..+++|++|++++| .++...|..+.  ++|+.|++.+|..    
T Consensus       367 ---~~~~~~l~~L~~L~Ls~N~-l~~~l~~~--~~~~l~~L~~L~Ls~N-~l~~~~~~~l~--~~L~~L~Ls~N~l----  433 (520)
T 2z7x_B          367 ---AEMTTQMKSLQQLDISQNS-VSYDEKKG--DCSWTKSLLSLNMSSN-ILTDTIFRCLP--PRIKVLDLHSNKI----  433 (520)
T ss_dssp             ---HHHHTTCTTCCEEECCSSC-CBCCGGGC--SCCCCTTCCEEECCSS-CCCGGGGGSCC--TTCCEEECCSSCC----
T ss_pred             ---hHHHhhCCCCCEEECCCCc-CCcccccc--hhccCccCCEEECcCC-CCCcchhhhhc--ccCCEEECCCCcc----
Confidence               3445677888888888873 443 4221  2345678888888875 34333233332  4556666655533    


Q ss_pred             eeccccCCCCCCCCCCccEEEEecCCCcceecchhhhhccCCCCEEEEccCC
Q 036269          502 IHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSRCP  553 (623)
Q Consensus       502 ~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~  553 (623)
                         . ..|..+..+++|+.|++++| +++.+++. .+..+++|++|++++|+
T Consensus       434 ---~-~ip~~~~~l~~L~~L~L~~N-~l~~l~~~-~~~~l~~L~~L~l~~N~  479 (520)
T 2z7x_B          434 ---K-SIPKQVVKLEALQELNVASN-QLKSVPDG-IFDRLTSLQKIWLHTNP  479 (520)
T ss_dssp             ---C-CCCGGGGGCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSSC
T ss_pred             ---c-ccchhhhcCCCCCEEECCCC-cCCccCHH-HhccCCcccEEECcCCC
Confidence               1 33444445566666666663 45554332 34555666666666655

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=9.8e-33  Score=299.14  Aligned_cols=363  Identities=15%  Similarity=0.178  Sum_probs=205.5

Q ss_pred             cccCCcCCcEEEcCCCCCcc------------------cccccc--CCCccCEEeccCCCCCCcCchhhhhccccCcEEE
Q 036269          126 LIGELSLLEILDLSESDVSE------------------IPVSFG--RLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELY  185 (623)
Q Consensus       126 ~~~~l~~L~~L~l~~~~i~~------------------lp~~i~--~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~  185 (623)
                      .++++++|++|++++|.++.                  +|..++  ++++|++|++++|...+.+|.. ++++++|++|+
T Consensus       201 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~  279 (636)
T 4eco_A          201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLIN  279 (636)
T ss_dssp             GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT-TTTCSSCCEEE
T ss_pred             HHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHH-HhcCCCCCEEE
Confidence            45555555555555555554                  555555  5555555555555445555543 55555555555


Q ss_pred             ecccc-cccccccccccccc-cccccccCC------CCccEEEeecCCCccCCC--c-ccccCccEEEEEeCCCCCCCcc
Q 036269          186 MSKTF-CHWQFENEDDSRSN-AKFIELGAL------SRLTSLHIDIPEGEIMPS--D-MSFQNLTSFSITIGGPEEVPLS  254 (623)
Q Consensus       186 l~~~~-~~~~~~~~~~~~~~-~~~~~l~~l------~~L~~L~l~~~~~~~~~~--~-~~~~~L~~L~l~~~~~~~~~~~  254 (623)
                      +++|. +.           . .+|..++.+      ++|+.|++++|.+..+|.  . ..+++|+.|+++++....    
T Consensus       280 Ls~n~~l~-----------~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g----  344 (636)
T 4eco_A          280 VACNRGIS-----------GEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG----  344 (636)
T ss_dssp             CTTCTTSC-----------HHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEE----
T ss_pred             CcCCCCCc-----------cccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCcc----
Confidence            55554 31           1 233333333      555555555555555554  2 455555555554443210    


Q ss_pred             hhhhhhhhcccccccceeeeccccccccchHHHHHHHhhceeEeecccCCcccccccccccCccC-ccEEEEecccCcee
Q 036269          255 DFIEVFSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNE-LMFLAIVGCNEMKY  333 (623)
Q Consensus       255 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~l~~  333 (623)
                                                 .+| .+.. +++|++|++++|... .++..+  ..+++ |+.|++++| .++.
T Consensus       345 ---------------------------~ip-~~~~-l~~L~~L~L~~N~l~-~lp~~l--~~l~~~L~~L~Ls~N-~l~~  391 (636)
T 4eco_A          345 ---------------------------KLP-AFGS-EIKLASLNLAYNQIT-EIPANF--CGFTEQVENLSFAHN-KLKY  391 (636)
T ss_dssp             ---------------------------ECC-CCEE-EEEESEEECCSSEEE-ECCTTS--EEECTTCCEEECCSS-CCSS
T ss_pred             ---------------------------chh-hhCC-CCCCCEEECCCCccc-cccHhh--hhhcccCcEEEccCC-cCcc
Confidence                                       001 0000 145666666655432 222222  44566 777777777 4544


Q ss_pred             ecccccccccccccccceeecccCcccccccccccC-----CCcCCCccEEEEeecCCcccccchhHHHhccccceEEEe
Q 036269          334 LLNSLERTLRVTLLKLEWLMIVDNRNFVEICHGQLP-----AGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVE  408 (623)
Q Consensus       334 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~-----~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~  408 (623)
                      ++...   ....+++|+.|+++++. +.......++     .-.+++|+.|++++| .++. +|...+..+++|++|+++
T Consensus       392 lp~~~---~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~-lp~~~~~~l~~L~~L~Ls  465 (636)
T 4eco_A          392 IPNIF---DAKSVSVMSAIDFSYNE-IGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISK-FPKELFSTGSPLSSINLM  465 (636)
T ss_dssp             CCSCC---CTTCSSCEEEEECCSSC-TTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCS-CCTHHHHTTCCCSEEECC
T ss_pred             cchhh---hhcccCccCEEECcCCc-CCCcchhhhcccccccccCCCCCEEECcCC-ccCc-CCHHHHccCCCCCEEECC
Confidence            44321   12224477888887776 2221111111     014568889999884 5554 676656678899999999


Q ss_pred             ccccceeeeeccceeccccccccccCccEEecCCccchhhcccCCCccc--ccCCccEEEEEcCCCcceeccCcccCccc
Q 036269          409 GCELLVSVFEIERVNIAKEETELFSSLEKLTLIGLPRMTDIWKGDTQFV--SLHDLKKIRVVFCDELRQVFPANLGKKAA  486 (623)
Q Consensus       409 ~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~--~l~~L~~L~l~~C~~l~~~~~~~l~~~~~  486 (623)
                      + +.++++...... .....+..+++|++|++++| .++.+   +....  .+++|++|++++ +.++. +|..+..+++
T Consensus       466 ~-N~l~~i~~~~~~-~~~~~~~~l~~L~~L~Ls~N-~l~~l---p~~~~~~~l~~L~~L~Ls~-N~l~~-ip~~~~~l~~  537 (636)
T 4eco_A          466 G-NMLTEIPKNSLK-DENENFKNTYLLTSIDLRFN-KLTKL---SDDFRATTLPYLVGIDLSY-NSFSK-FPTQPLNSST  537 (636)
T ss_dssp             S-SCCSBCCSSSSE-ETTEECTTGGGCCEEECCSS-CCCBC---CGGGSTTTCTTCCEEECCS-SCCSS-CCCGGGGCSS
T ss_pred             C-CCCCCcCHHHhc-cccccccccCCccEEECcCC-cCCcc---ChhhhhccCCCcCEEECCC-CCCCC-cChhhhcCCC
Confidence            8 677765211000 00001122348999999988 56665   44444  688999999998 46666 4777778888


Q ss_pred             chhhhhhcccccccceeccccCCCCCCCCCCccEEEEecCCCcceecchhhhhccCCCCEEEEccCCchhhh
Q 036269          487 AEEMVLYRNRRDQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSRCPTLQEI  558 (623)
Q Consensus       487 L~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~l  558 (623)
                      |+.|++.+|..-+ ...+....|..+..+++|+.|++++| +++.+|..  +.  ++|++|++++|+ +..+
T Consensus       538 L~~L~Ls~N~~ls-~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~ip~~--~~--~~L~~L~Ls~N~-l~~~  602 (636)
T 4eco_A          538 LKGFGIRNQRDAQ-GNRTLREWPEGITLCPSLTQLQIGSN-DIRKVNEK--IT--PNISVLDIKDNP-NISI  602 (636)
T ss_dssp             CCEEECCSCBCTT-CCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSC--CC--TTCCEEECCSCT-TCEE
T ss_pred             CCEEECCCCcccc-cCcccccChHHHhcCCCCCEEECCCC-cCCccCHh--Hh--CcCCEEECcCCC-Cccc
Confidence            8888885432000 02345666778888889999999885 45777543  22  788999999887 5444

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.98  E-value=3.6e-32  Score=294.66  Aligned_cols=425  Identities=14%  Similarity=0.157  Sum_probs=246.2

Q ss_pred             CCCCCCC---CCCCC--CCCCcEEEcccCCcc-cccccC-CCCCcceEEccCCCCC-------------CCChhhHh---
Q 036269           23 GVELKDW---PSINT--FEDLTGISLMFNDIH-EVHEGL-QCPRLQALFLQKNDLL-------------DIPDPFFQ---   79 (623)
Q Consensus        23 ~~~~~~~---~~~~~--~~~l~~L~l~~~~~~-~l~~~~-~~~~L~~L~l~~~~~~-------------~l~~~~~~---   79 (623)
                      +.....|   +++..  -.+++.|+++++.+. .+|+.+ .+++|++|++++|.+.             .+|.....   
T Consensus        63 ~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~  142 (636)
T 4eco_A           63 NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR  142 (636)
T ss_dssp             SSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHH
T ss_pred             CCCcccccCCCCeEEcCCCCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHH
Confidence            3445667   66533  247999999999885 677766 8999999999998541             11111000   


Q ss_pred             ------------------------------------CCCcccEEEcc--CCcccccCCCchhhhccccCcEEeccCCcCC
Q 036269           80 ------------------------------------GMKDLKVLDLG--GSGVFSLFSLPSSLSFLINLRTLSLHDCQHF  121 (623)
Q Consensus        80 ------------------------------------~l~~Lr~L~l~--~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l  121 (623)
                                                          ....++.+.+.  +|.++   .+|..++++++|++|++++|. +
T Consensus       143 l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~---~ip~~l~~l~~L~~L~Ls~n~-l  218 (636)
T 4eco_A          143 MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT---FVSKAVMRLTKLRQFYMGNSP-F  218 (636)
T ss_dssp             THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEE---EECGGGGGCTTCCEEEEESCC-C
T ss_pred             hhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCc---cCCHHHhcccCCCEEECcCCc-c
Confidence                                                00011111111  34553   377777777777777777777 6


Q ss_pred             CC------------------c-cccc--CCcCCcEEEcCCCCCc-cccccccCCCccCEEeccCCCCCC--cCchhhhhc
Q 036269          122 GD------------------L-SLIG--ELSLLEILDLSESDVS-EIPVSFGRLGHLRLLDLTDCYNLE--LIPRGVLSR  177 (623)
Q Consensus       122 ~~------------------i-~~~~--~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~~~~~~--~l~~~~~~~  177 (623)
                      ..                  + ..++  ++++|++|++++|.+. .+|..++++++|++|++++|..+.  .+|.. +++
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~-~~~  297 (636)
T 4eco_A          219 VAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDD-WQA  297 (636)
T ss_dssp             CGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHH-HHH
T ss_pred             ccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHH-HHh
Confidence            54                  5 5556  7777777777777655 667777777777777777755233  46655 555


Q ss_pred             c------ccCcEEEecccccccccccccccccccccc--cccCCCCccEEEeecCCCc-cCCCcccccCccEEEEEeCCC
Q 036269          178 L------RKLEELYMSKTFCHWQFENEDDSRSNAKFI--ELGALSRLTSLHIDIPEGE-IMPSDMSFQNLTSFSITIGGP  248 (623)
Q Consensus       178 l------~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~-~~~~~~~~~~L~~L~l~~~~~  248 (623)
                      +      ++|++|++++|.+            ..++.  .++++++|+.|++++|.+. .+|....+++|+.|+++++..
T Consensus       298 L~~~~~l~~L~~L~L~~n~l------------~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l  365 (636)
T 4eco_A          298 LADAPVGEKIQIIYIGYNNL------------KTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQI  365 (636)
T ss_dssp             HHHSGGGGTCCEEECCSSCC------------SSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEE
T ss_pred             hhccccCCCCCEEECCCCcC------------CccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCcc
Confidence            4      7777777777766            24555  6777777777777777765 666336666777777665532


Q ss_pred             CCCCcchhhhhhhhcccccccceeeeccccccccchHHHHHHHhh-ceeEeecccCCcccccccccccCccCccEEEEec
Q 036269          249 EEVPLSDFIEVFSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLR-SEILALGDVNDLENIVSDLAHDGFNELMFLAIVG  327 (623)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  327 (623)
                      ..                                +|.++... ++ |++|++++|... .++..+....+++|+.|++++
T Consensus       366 ~~--------------------------------lp~~l~~l-~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~  411 (636)
T 4eco_A          366 TE--------------------------------IPANFCGF-TEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSY  411 (636)
T ss_dssp             EE--------------------------------CCTTSEEE-CTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCS
T ss_pred             cc--------------------------------ccHhhhhh-cccCcEEEccCCcCc-ccchhhhhcccCccCEEECcC
Confidence            21                                11111111 34 666666665532 333222222234666666666


Q ss_pred             ccCceeecccccc---cccccccccceeecccCcccccccccccCC---CcCCCccEEEEeecCCcccccchhHHHh---
Q 036269          328 CNEMKYLLNSLER---TLRVTLLKLEWLMIVDNRNFVEICHGQLPA---GCLSNVKRLDVRDCGSVLKILPSHLVQS---  398 (623)
Q Consensus       328 ~~~l~~~~~~~~~---~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~---~~~~~L~~L~l~~c~~l~~~~~~~~~~~---  398 (623)
                      | .+.........   ...-.+++|+.|+++++. ++     .+|.   ..+++|+.|++++| .++. +|......   
T Consensus       412 N-~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~-l~-----~lp~~~~~~l~~L~~L~Ls~N-~l~~-i~~~~~~~~~~  482 (636)
T 4eco_A          412 N-EIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ-IS-----KFPKELFSTGSPLSSINLMGN-MLTE-IPKNSLKDENE  482 (636)
T ss_dssp             S-CTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC-CC-----SCCTHHHHTTCCCSEEECCSS-CCSB-CCSSSSEETTE
T ss_pred             C-cCCCcchhhhcccccccccCCCCCEEECcCCc-cC-----cCCHHHHccCCCCCEEECCCC-CCCC-cCHHHhccccc
Confidence            6 23221111000   000134466677776665 22     2222   13566777777663 4443 44332221   


Q ss_pred             ----ccccceEEEeccccceeeeeccceeccccccc--cccCccEEecCCccchhhcccCCCcccccCCccEEEEEcC--
Q 036269          399 ----FQNLQRLRVEGCELLVSVFEIERVNIAKEETE--LFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFC--  470 (623)
Q Consensus       399 ----l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~--~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~L~~L~l~~C--  470 (623)
                          +++|+.|++++ +.++++         |..+.  .+++|++|++++| .++.+   +..+..+++|++|+++++  
T Consensus       483 ~~~~l~~L~~L~Ls~-N~l~~l---------p~~~~~~~l~~L~~L~Ls~N-~l~~i---p~~~~~l~~L~~L~Ls~N~~  548 (636)
T 4eco_A          483 NFKNTYLLTSIDLRF-NKLTKL---------SDDFRATTLPYLVGIDLSYN-SFSKF---PTQPLNSSTLKGFGIRNQRD  548 (636)
T ss_dssp             ECTTGGGCCEEECCS-SCCCBC---------CGGGSTTTCTTCCEEECCSS-CCSSC---CCGGGGCSSCCEEECCSCBC
T ss_pred             cccccCCccEEECcC-CcCCcc---------ChhhhhccCCCcCEEECCCC-CCCCc---ChhhhcCCCCCEEECCCCcc
Confidence                22777777777 556654         44444  6777777777777 44444   445556777777777542  


Q ss_pred             ---CCcceeccCcccCcccchhhhhhcccccccceeccccCCCCCCCCCCccEEEEecCCCccee
Q 036269          471 ---DELRQVFPANLGKKAAAEEMVLYRNRRDQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNL  532 (623)
Q Consensus       471 ---~~l~~~~~~~l~~~~~L~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~  532 (623)
                         +++....|..+..+++|++|++.+|..        +..|..+.  ++|+.|++++|+ +..+
T Consensus       549 ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l--------~~ip~~~~--~~L~~L~Ls~N~-l~~~  602 (636)
T 4eco_A          549 AQGNRTLREWPEGITLCPSLTQLQIGSNDI--------RKVNEKIT--PNISVLDIKDNP-NISI  602 (636)
T ss_dssp             TTCCBCCCCCCTTGGGCSSCCEEECCSSCC--------CBCCSCCC--TTCCEEECCSCT-TCEE
T ss_pred             cccCcccccChHHHhcCCCCCEEECCCCcC--------CccCHhHh--CcCCEEECcCCC-Cccc
Confidence               344445577777777777777777643        33444433  799999999964 4444

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.98  E-value=2.8e-31  Score=292.19  Aligned_cols=357  Identities=14%  Similarity=0.136  Sum_probs=190.8

Q ss_pred             cccCCcCCcEEEcCCCCCcc------------------cccccc--CCCccCEEeccCCCCCCcCchhhhhccccCcEEE
Q 036269          126 LIGELSLLEILDLSESDVSE------------------IPVSFG--RLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELY  185 (623)
Q Consensus       126 ~~~~l~~L~~L~l~~~~i~~------------------lp~~i~--~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~  185 (623)
                      .++++++|++|++++|.++.                  +|..++  ++++|++|++++|...+.+|.. +.++++|+.|+
T Consensus       443 ~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~~L~  521 (876)
T 4ecn_A          443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLN  521 (876)
T ss_dssp             GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGGCSSCCEEE
T ss_pred             HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH-HhCCCCCCEEE
Confidence            44555555555555555554                  555544  5555555555555445555543 55555555555


Q ss_pred             ecccc-ccccccccccccccccccccc-------CCCCccEEEeecCCCccCCC--c-ccccCccEEEEEeCCCCCCCcc
Q 036269          186 MSKTF-CHWQFENEDDSRSNAKFIELG-------ALSRLTSLHIDIPEGEIMPS--D-MSFQNLTSFSITIGGPEEVPLS  254 (623)
Q Consensus       186 l~~~~-~~~~~~~~~~~~~~~~~~~l~-------~l~~L~~L~l~~~~~~~~~~--~-~~~~~L~~L~l~~~~~~~~~~~  254 (623)
                      +++|. +..          ..+|..++       .+++|+.|++++|.+..+|.  . ..+++|+.|+++.+.....   
T Consensus       522 Ls~N~~lsg----------~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~l---  588 (876)
T 4ecn_A          522 IACNRGISA----------AQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHL---  588 (876)
T ss_dssp             CTTCTTSCH----------HHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBC---
T ss_pred             CcCCCCccc----------ccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccc---
Confidence            55554 311          01222222       22355555555555555555  2 4455555555544432211   


Q ss_pred             hhhhhhhhcccccccceeeeccccccccchHHHHHHHhhceeEeecccCCcccccccccccCccC-ccEEEEecccCcee
Q 036269          255 DFIEVFSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNE-LMFLAIVGCNEMKY  333 (623)
Q Consensus       255 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~l~~  333 (623)
                                                   | .+.. +++|+.|++++|... .++..+  ..+++ |+.|++++| .++.
T Consensus       589 -----------------------------p-~~~~-L~~L~~L~Ls~N~l~-~lp~~l--~~l~~~L~~L~Ls~N-~L~~  633 (876)
T 4ecn_A          589 -----------------------------E-AFGT-NVKLTDLKLDYNQIE-EIPEDF--CAFTDQVEGLGFSHN-KLKY  633 (876)
T ss_dssp             -----------------------------C-CCCT-TSEESEEECCSSCCS-CCCTTS--CEECTTCCEEECCSS-CCCS
T ss_pred             -----------------------------h-hhcC-CCcceEEECcCCccc-cchHHH--hhccccCCEEECcCC-CCCc
Confidence                                         1 0000 145666666655532 222222  44566 777777777 4544


Q ss_pred             ecccccccccccccccceeecccCcccccccccccC----CCcCCCccEEEEeecCCcccccchhHHHhccccceEEEec
Q 036269          334 LLNSLERTLRVTLLKLEWLMIVDNRNFVEICHGQLP----AGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEG  409 (623)
Q Consensus       334 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~----~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~  409 (623)
                      ++...   .....++|+.|+++++. +.... ..++    .-..++|+.|++++| .++. +|......+++|+.|++++
T Consensus       634 lp~~~---~~~~~~~L~~L~Ls~N~-l~g~i-p~l~~~l~~~~~~~L~~L~Ls~N-~L~~-lp~~~~~~l~~L~~L~Ls~  706 (876)
T 4ecn_A          634 IPNIF---NAKSVYVMGSVDFSYNK-IGSEG-RNISCSMDDYKGINASTVTLSYN-EIQK-FPTELFATGSPISTIILSN  706 (876)
T ss_dssp             CCSCC---CTTCSSCEEEEECCSSC-TTTTS-SSCSSCTTTCCCCCEEEEECCSS-CCCS-CCHHHHHTTCCCSEEECCS
T ss_pred             Cchhh---hccccCCCCEEECcCCc-CCCcc-ccchhhhccccCCCcCEEEccCC-cCCc-cCHHHHccCCCCCEEECCC
Confidence            44211   11123347777777775 21110 0111    113458889999885 5554 6776566888999999998


Q ss_pred             cccceeeeeccceeccccccccccCccEEecCCccchhhcccCCCccc--ccCCccEEEEEcCCCcceeccCcccCcccc
Q 036269          410 CELLVSVFEIERVNIAKEETELFSSLEKLTLIGLPRMTDIWKGDTQFV--SLHDLKKIRVVFCDELRQVFPANLGKKAAA  487 (623)
Q Consensus       410 c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~--~l~~L~~L~l~~C~~l~~~~~~~l~~~~~L  487 (623)
                       +.++.+...... .....+..+++|+.|++++| .++.+   +....  .+++|+.|+++++ .++.+ |..+..+++|
T Consensus       707 -N~L~~ip~~~~~-~~~~~l~nl~~L~~L~Ls~N-~L~~l---p~~l~~~~l~~L~~L~Ls~N-~L~~l-p~~l~~L~~L  778 (876)
T 4ecn_A          707 -NLMTSIPENSLK-PKDGNYKNTYLLTTIDLRFN-KLTSL---SDDFRATTLPYLSNMDVSYN-CFSSF-PTQPLNSSQL  778 (876)
T ss_dssp             -CCCSCCCTTSSS-CTTSCCTTGGGCCEEECCSS-CCCCC---CGGGSTTTCTTCCEEECCSS-CCSSC-CCGGGGCTTC
T ss_pred             -CcCCccChHHhc-cccccccccCCccEEECCCC-CCccc---hHHhhhccCCCcCEEEeCCC-CCCcc-chhhhcCCCC
Confidence             677765211000 00001223458999999888 66665   44444  6888999999884 56654 6666666777


Q ss_pred             hhhhhhcccccccc-eeccccCCCCCCCCCCccEEEEecCCCcceecchhhhhccCCCCEEEEccCC
Q 036269          488 EEMVLYRNRRDQIH-IHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSRCP  553 (623)
Q Consensus       488 ~~l~~~~~~~~~l~-~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~  553 (623)
                      +.|++.+|..  +. ..+....|..+..+++|+.|++++| ++..+|..  +  .++|+.|+|++|+
T Consensus       779 ~~L~Ls~N~~--ls~N~l~~~ip~~l~~L~~L~~L~Ls~N-~L~~Ip~~--l--~~~L~~LdLs~N~  838 (876)
T 4ecn_A          779 KAFGIRHQRD--AEGNRILRQWPTGITTCPSLIQLQIGSN-DIRKVDEK--L--TPQLYILDIADNP  838 (876)
T ss_dssp             CEEECCCCBC--TTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSC--C--CSSSCEEECCSCT
T ss_pred             CEEECCCCCC--cccccccccChHHHhcCCCCCEEECCCC-CCCccCHh--h--cCCCCEEECCCCC
Confidence            7766655320  00 1233455666666777777777764 34655432  1  2567777777766

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.97  E-value=4.5e-31  Score=280.87  Aligned_cols=446  Identities=16%  Similarity=0.160  Sum_probs=287.2

Q ss_pred             ceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCCcCCCCc--ccccCCcCCcEEEc
Q 036269           61 QALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDL--SLIGELSLLEILDL  138 (623)
Q Consensus        61 ~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~L~~L~l  138 (623)
                      ++|++++|.++.+|..++   ++|++|++++|.+.  +..|..+..+++|++|++++|. +..+  ..++++++|++|++
T Consensus         3 ~~l~ls~n~l~~ip~~~~---~~L~~L~Ls~n~i~--~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L   76 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKDLS---QKTTILNISQNYIS--ELWTSDILSLSKLRILIISHNR-IQYLDISVFKFNQELEYLDL   76 (520)
T ss_dssp             CEEECTTSCCSSCCCSCC---TTCSEEECCSSCCC--CCCHHHHTTCTTCCEEECCSSC-CCEEEGGGGTTCTTCCEEEC
T ss_pred             ceEecCCCCccccccccc---ccccEEECCCCccc--ccChhhccccccccEEecCCCc-cCCcChHHhhcccCCCEEec
Confidence            689999999999998652   89999999999994  3344679999999999999999 8776  57999999999999


Q ss_pred             CCCCCccccccccCCCccCEEeccCCCCCC-cCchhhhhccccCcEEEecccccccccccccccccccccccccCCCCc-
Q 036269          139 SESDVSEIPVSFGRLGHLRLLDLTDCYNLE-LIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRL-  216 (623)
Q Consensus       139 ~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~-~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L-  216 (623)
                      ++|.++.+|..  .+++|++|++++|...+ .+|.. ++++++|++|++++|.+.           .   ..++.+++| 
T Consensus        77 s~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~-~~~l~~L~~L~L~~n~l~-----------~---~~~~~l~~L~  139 (520)
T 2z7x_B           77 SHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKE-FGNMSQLKFLGLSTTHLE-----------K---SSVLPIAHLN  139 (520)
T ss_dssp             CSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGG-GGGCTTCCEEEEEESSCC-----------G---GGGGGGTTSC
T ss_pred             CCCceeecCcc--ccCCccEEeccCCccccccchhh-hccCCcceEEEecCcccc-----------h---hhccccccce
Confidence            99999999977  89999999999954433 35555 899999999999999873           2   245566677 


Q ss_pred             -cEEEeecCCC--cc-CCCcccccCcc--EEEEEe--CCCCCCCcchhhhhhhhcccccccceeeeccccccccchHHHH
Q 036269          217 -TSLHIDIPEG--EI-MPSDMSFQNLT--SFSITI--GGPEEVPLSDFIEVFSRKFKKRCSRAMGLSQDMRISALPSWIK  288 (623)
Q Consensus       217 -~~L~l~~~~~--~~-~~~~~~~~~L~--~L~l~~--~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~  288 (623)
                       +.|++++|.+  .. .|..  +..+.  .+++..  +....                               .++....
T Consensus       140 L~~L~l~~n~l~~~~~~~~~--l~~l~~~~l~l~l~~n~~~~-------------------------------~~~~~~~  186 (520)
T 2z7x_B          140 ISKVLLVLGETYGEKEDPEG--LQDFNTESLHIVFPTNKEFH-------------------------------FILDVSV  186 (520)
T ss_dssp             EEEEEEEECTTTTSSCCTTT--TTTCCEEEEEEECCSSSCCC-------------------------------CCCCCCC
T ss_pred             eeEEEeeccccccccccccc--ccccccceEEEEeccCcchh-------------------------------hhhhhhh
Confidence             9999999876  22 2322  33332  333322  21111                               1111000


Q ss_pred             HHHhhceeEeecccCC------cccccccccccCccCccEEEEecccCceeecccccccccccccccceeecccCccccc
Q 036269          289 NLLLRSEILALGDVND------LENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLLKLEWLMIVDNRNFVE  362 (623)
Q Consensus       289 ~~~~~L~~L~l~~~~~------~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~  362 (623)
                      ..+++|+.+++++|..      +...++.+  ..+++|+.|+++++ .+........ ......++|++|+++++. +. 
T Consensus       187 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l--~~l~~L~~L~l~~~-~l~~~~~~~~-~~~~~~~~L~~L~l~~n~-l~-  260 (520)
T 2z7x_B          187 KTVANLELSNIKCVLEDNKCSYFLSILAKL--QTNPKLSNLTLNNI-ETTWNSFIRI-LQLVWHTTVWYFSISNVK-LQ-  260 (520)
T ss_dssp             TTCSEEEECCEEECCSTTTTHHHHHHHHGG--GGCTTCCEEEEEEE-EEEHHHHHHH-HHHHHTSSCSEEEEEEEE-EE-
T ss_pred             hcccceeeccccccccccccceeecchhhh--ccccchhhcccccc-ccCHHHHHHH-HHHhhhCcccEEEeeccc-cc-
Confidence            1115666676666531      11122222  45677888888777 2221100000 011123478888888775 22 


Q ss_pred             ccccccCC-------CcCCCccEEEEeecCCcccccchhHHHhc---cccceEEEeccccceeeeeccceeccccccccc
Q 036269          363 ICHGQLPA-------GCLSNVKRLDVRDCGSVLKILPSHLVQSF---QNLQRLRVEGCELLVSVFEIERVNIAKEETELF  432 (623)
Q Consensus       363 ~~~~~~~~-------~~~~~L~~L~l~~c~~l~~~~~~~~~~~l---~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~  432 (623)
                         +.+|.       +.+++|+.++++++..   .+|...+..+   .+|+.|++++ +.+..+         + ....+
T Consensus       261 ---~~~p~~~~~~~~~~l~~L~~l~l~~n~~---~~p~~~~~~~~~~~~L~~L~l~~-n~l~~~---------~-~~~~l  323 (520)
T 2z7x_B          261 ---GQLDFRDFDYSGTSLKALSIHQVVSDVF---GFPQSYIYEIFSNMNIKNFTVSG-TRMVHM---------L-CPSKI  323 (520)
T ss_dssp             ---SCCCCCCCCCCSCCCCEEEEEEEEECCC---CSCTHHHHHHHHTCCCSEEEEES-SCCCCC---------C-CCSSC
T ss_pred             ---CccccchhhcccccCceeEeccccccce---ecchhhhhcccccCceeEEEcCC-Cccccc---------c-chhhC
Confidence               12221       4577788888877543   2553334444   5688888888 444432         1 11457


Q ss_pred             cCccEEecCCccchhhcccCCCcccccCCccEEEEEcCCCccee--ccCcccCcccchhhhhhcccccccceeccccCCC
Q 036269          433 SSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFCDELRQV--FPANLGKKAAAEEMVLYRNRRDQIHIHATTSTSS  510 (623)
Q Consensus       433 ~~L~~L~l~~c~~l~~i~~~~~~~~~l~~L~~L~l~~C~~l~~~--~~~~l~~~~~L~~l~~~~~~~~~l~~~~~~~~~~  510 (623)
                      ++|++|++++|. ++..  .+..+..+++|++|++++| +++.+  .|..++.+++|++|++.+|..       ....|.
T Consensus       324 ~~L~~L~Ls~n~-l~~~--~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N~l-------~~~l~~  392 (520)
T 2z7x_B          324 SPFLHLDFSNNL-LTDT--VFENCGHLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQNSV-------SYDEKK  392 (520)
T ss_dssp             CCCCEEECCSSC-CCTT--TTTTCCCCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSSCC-------BCCGGG
T ss_pred             CcccEEEeECCc-cChh--hhhhhccCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCCcC-------Cccccc
Confidence            788888888873 4431  1344566788888888874 45542  245677788888888887744       232333


Q ss_pred             C-CCCCCCccEEEEecCCCcceecchhhhhccCCCCEEEEccCCchhhhhcCCCCcccCcCCCcceeecCcccceecccC
Q 036269          511 P-TPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSRCPTLQEIIMNDEGEVGLQGASTEKITFPSLFSIQLCLL  589 (623)
Q Consensus       511 ~-~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c  589 (623)
                      + +..+++|++|++++|.--..++..  +  .++|+.|++++|. ++.++.             ....+++|++|+++++
T Consensus       393 ~~~~~l~~L~~L~Ls~N~l~~~~~~~--l--~~~L~~L~Ls~N~-l~~ip~-------------~~~~l~~L~~L~L~~N  454 (520)
T 2z7x_B          393 GDCSWTKSLLSLNMSSNILTDTIFRC--L--PPRIKVLDLHSNK-IKSIPK-------------QVVKLEALQELNVASN  454 (520)
T ss_dssp             CSCCCCTTCCEEECCSSCCCGGGGGS--C--CTTCCEEECCSSC-CCCCCG-------------GGGGCTTCCEEECCSS
T ss_pred             chhccCccCCEEECcCCCCCcchhhh--h--cccCCEEECCCCc-ccccch-------------hhhcCCCCCEEECCCC
Confidence            2 567788888888886432332211  1  1688888888886 666643             3447788888888887


Q ss_pred             cccceecCCCCcceeecCCccEEEeccCC
Q 036269          590 DSLTCFCSSGSHATVEFLALEALQIIDCP  618 (623)
Q Consensus       590 ~~l~~~~~~~~~~~~~~~~L~~L~i~~c~  618 (623)
                       .++.++. +.  ...+++|++|++.+++
T Consensus       455 -~l~~l~~-~~--~~~l~~L~~L~l~~N~  479 (520)
T 2z7x_B          455 -QLKSVPD-GI--FDRLTSLQKIWLHTNP  479 (520)
T ss_dssp             -CCCCCCT-TT--TTTCTTCCEEECCSSC
T ss_pred             -cCCccCH-HH--hccCCcccEEECcCCC
Confidence             5667765 31  2246788888888765

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.97  E-value=1.1e-30  Score=287.46  Aligned_cols=419  Identities=13%  Similarity=0.113  Sum_probs=207.5

Q ss_pred             CCCCC--CCCCcEEEcccCCcc-cccccC-CCCCcceEEc-cCCCCC-CCChh---------------------------
Q 036269           30 PSINT--FEDLTGISLMFNDIH-EVHEGL-QCPRLQALFL-QKNDLL-DIPDP---------------------------   76 (623)
Q Consensus        30 ~~~~~--~~~l~~L~l~~~~~~-~l~~~~-~~~~L~~L~l-~~~~~~-~l~~~---------------------------   76 (623)
                      +++.+  -.+++.|+++++.+. .+|+.+ .+++|+.|+| ++|.+. ..+..                           
T Consensus       315 ~GV~C~~~~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~  394 (876)
T 4ecn_A          315 PGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDY  394 (876)
T ss_dssp             TTEEECTTSCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCC
T ss_pred             CceEecCCCCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhcc
Confidence            66643  367999999999985 677777 8999999999 666432 10000                           


Q ss_pred             -------------h--------H--hCCCcccEEEcc--CCcccccCCCchhhhccccCcEEeccCCcCCCC--------
Q 036269           77 -------------F--------F--QGMKDLKVLDLG--GSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGD--------  123 (623)
Q Consensus        77 -------------~--------~--~~l~~Lr~L~l~--~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~--------  123 (623)
                                   +        .  .....++.+.+.  +|.+   ..+|..+.++++|++|++++|. +..        
T Consensus       395 ~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L---~~IP~~l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~  470 (876)
T 4ecn_A          395 DQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRI---TFISKAIQRLTKLQIIYFANSP-FTYDNIAVDWE  470 (876)
T ss_dssp             CGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEE---EEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCS
T ss_pred             CcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcc---cchhHHHhcCCCCCEEECcCCc-CCCCccccccc
Confidence                         0        0  000111111111  1333   2255556666666666666665 543        


Q ss_pred             ----------c-cccc--CCcCCcEEEcCCCCCc-cccccccCCCccCEEeccCCCCCC--cCchhhhhccc-------c
Q 036269          124 ----------L-SLIG--ELSLLEILDLSESDVS-EIPVSFGRLGHLRLLDLTDCYNLE--LIPRGVLSRLR-------K  180 (623)
Q Consensus       124 ----------i-~~~~--~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~~~~~~--~l~~~~~~~l~-------~  180 (623)
                                + ..++  ++++|++|++++|.+. .+|..++++++|++|++++|..+.  .+|.. +++++       +
T Consensus       471 ~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~-i~~L~~~~~~l~~  549 (876)
T 4ecn_A          471 DANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKAD-WTRLADDEDTGPK  549 (876)
T ss_dssp             CTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHH-HHHHHHCTTTTTT
T ss_pred             ccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHH-HHhhhhcccccCC
Confidence                      3 3333  5666666666665543 555556666666666666643233  35543 34443       6


Q ss_pred             CcEEEecccccccccccccccccccccc--cccCCCCccEEEeecCCCccCCCcccccCccEEEEEeCCCCCCCcchhhh
Q 036269          181 LEELYMSKTFCHWQFENEDDSRSNAKFI--ELGALSRLTSLHIDIPEGEIMPSDMSFQNLTSFSITIGGPEEVPLSDFIE  258 (623)
Q Consensus       181 L~~L~l~~~~~~~~~~~~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  258 (623)
                      |++|++++|.+            ..++.  .++++++|+.|++++|.+..+|....+++|+.|+++++.....+      
T Consensus       550 L~~L~Ls~N~L------------~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp------  611 (876)
T 4ecn_A          550 IQIFYMGYNNL------------EEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIP------  611 (876)
T ss_dssp             CCEEECCSSCC------------CBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSCCC------
T ss_pred             ccEEEeeCCcC------------CccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccccch------
Confidence            66666666655            13344  45566666666666665555553355555666655554432111      


Q ss_pred             hhhhcccccccceeeeccccccccchHHHHHHHhh-ceeEeecccCCcccccccccccCccCccEEEEecccCceeeccc
Q 036269          259 VFSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLR-SEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNS  337 (623)
Q Consensus       259 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~  337 (623)
                                                .++... ++ |+.|++++|.. ..++..+.....++|+.|++++| .+......
T Consensus       612 --------------------------~~l~~l-~~~L~~L~Ls~N~L-~~lp~~~~~~~~~~L~~L~Ls~N-~l~g~ip~  662 (876)
T 4ecn_A          612 --------------------------EDFCAF-TDQVEGLGFSHNKL-KYIPNIFNAKSVYVMGSVDFSYN-KIGSEGRN  662 (876)
T ss_dssp             --------------------------TTSCEE-CTTCCEEECCSSCC-CSCCSCCCTTCSSCEEEEECCSS-CTTTTSSS
T ss_pred             --------------------------HHHhhc-cccCCEEECcCCCC-CcCchhhhccccCCCCEEECcCC-cCCCcccc
Confidence                                      111001 23 44555544442 12222111111223555555555 22111000


Q ss_pred             c-cccccccccccceeecccCcccccccccccCC---CcCCCccEEEEeecCCcccccchhHHH-------hccccceEE
Q 036269          338 L-ERTLRVTLLKLEWLMIVDNRNFVEICHGQLPA---GCLSNVKRLDVRDCGSVLKILPSHLVQ-------SFQNLQRLR  406 (623)
Q Consensus       338 ~-~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~---~~~~~L~~L~l~~c~~l~~~~~~~~~~-------~l~~L~~L~  406 (623)
                      . ........++|+.|++++|. +.     .+|.   ..+++|+.|++++| .++. +|.....       ++++|+.|+
T Consensus       663 l~~~l~~~~~~~L~~L~Ls~N~-L~-----~lp~~~~~~l~~L~~L~Ls~N-~L~~-ip~~~~~~~~~~l~nl~~L~~L~  734 (876)
T 4ecn_A          663 ISCSMDDYKGINASTVTLSYNE-IQ-----KFPTELFATGSPISTIILSNN-LMTS-IPENSLKPKDGNYKNTYLLTTID  734 (876)
T ss_dssp             CSSCTTTCCCCCEEEEECCSSC-CC-----SCCHHHHHTTCCCSEEECCSC-CCSC-CCTTSSSCTTSCCTTGGGCCEEE
T ss_pred             chhhhccccCCCcCEEEccCCc-CC-----ccCHHHHccCCCCCEEECCCC-cCCc-cChHHhccccccccccCCccEEE
Confidence            0 00000112345555555554 21     1221   13455555555553 3332 3332111       223666666


Q ss_pred             Eeccccceeeeeccceeccccccc--cccCccEEecCCccchhhcccCCCcccccCCccEEEEEcC-----CCcceeccC
Q 036269          407 VEGCELLVSVFEIERVNIAKEETE--LFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFC-----DELRQVFPA  479 (623)
Q Consensus       407 l~~c~~l~~i~~~~~~~~~~~~~~--~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~L~~L~l~~C-----~~l~~~~~~  479 (623)
                      +++ +.++++         |..+.  .+++|+.|++++| .++.+   +..+..+++|+.|+++++     +.+....|.
T Consensus       735 Ls~-N~L~~l---------p~~l~~~~l~~L~~L~Ls~N-~L~~l---p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~  800 (876)
T 4ecn_A          735 LRF-NKLTSL---------SDDFRATTLPYLSNMDVSYN-CFSSF---PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPT  800 (876)
T ss_dssp             CCS-SCCCCC---------CGGGSTTTCTTCCEEECCSS-CCSSC---CCGGGGCTTCCEEECCCCBCTTCCBCCCCCCT
T ss_pred             CCC-CCCccc---------hHHhhhccCCCcCEEEeCCC-CCCcc---chhhhcCCCCCEEECCCCCCcccccccccChH
Confidence            666 455544         33443  5566666666665 34443   344455666666666542     334444566


Q ss_pred             cccCcccchhhhhhcccccccceeccccCCCCCCCCCCccEEEEecCCCcceec
Q 036269          480 NLGKKAAAEEMVLYRNRRDQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLF  533 (623)
Q Consensus       480 ~l~~~~~L~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~  533 (623)
                      .+..+++|+.|++.+|..        +..|..+.  ++|+.|+|++|+ +..+.
T Consensus       801 ~l~~L~~L~~L~Ls~N~L--------~~Ip~~l~--~~L~~LdLs~N~-l~~i~  843 (876)
T 4ecn_A          801 GITTCPSLIQLQIGSNDI--------RKVDEKLT--PQLYILDIADNP-NISID  843 (876)
T ss_dssp             TGGGCSSCCEEECCSSCC--------CBCCSCCC--SSSCEEECCSCT-TCEEE
T ss_pred             HHhcCCCCCEEECCCCCC--------CccCHhhc--CCCCEEECCCCC-CCccC
Confidence            666666777777666633        33444433  699999999965 55543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.97  E-value=2.1e-29  Score=270.24  Aligned_cols=465  Identities=17%  Similarity=0.145  Sum_probs=297.4

Q ss_pred             CCCCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEe
Q 036269           35 FEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLS  114 (623)
Q Consensus        35 ~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~  114 (623)
                      ....++++++++.++.+|.... ++++.|++++|.+..+++..|.++++|++|++++|.++  +..|..+..+++|++|+
T Consensus        30 ~~~~~~l~ls~~~L~~ip~~~~-~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~  106 (562)
T 3a79_B           30 NELESMVDYSNRNLTHVPKDLP-PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR--SLDFHVFLFNQDLEYLD  106 (562)
T ss_dssp             ---CCEEECTTSCCCSCCTTSC-TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCC--EECTTTTTTCTTCCEEE
T ss_pred             cCCCcEEEcCCCCCccCCCCCC-CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCC--cCCHHHhCCCCCCCEEE
Confidence            3445899999999999997654 79999999999999888777899999999999999994  44467799999999999


Q ss_pred             ccCCcCCCCcccccCCcCCcEEEcCCCCCcccc--ccccCCCccCEEeccCCCCCCcCchhhhhccccC--cEEEecccc
Q 036269          115 LHDCQHFGDLSLIGELSLLEILDLSESDVSEIP--VSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKL--EELYMSKTF  190 (623)
Q Consensus       115 l~~~~~l~~i~~~~~l~~L~~L~l~~~~i~~lp--~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L--~~L~l~~~~  190 (623)
                      +++|. +..++.. .+++|++|++++|.++.+|  ..++++++|++|+++++ .+....   +..+++|  ++|++++|.
T Consensus       107 Ls~N~-l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n-~l~~~~---~~~l~~L~L~~L~L~~n~  180 (562)
T 3a79_B          107 VSHNR-LQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA-KFRQLD---LLPVAHLHLSCILLDLVS  180 (562)
T ss_dssp             CTTSC-CCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECS-BCCTTT---TGGGTTSCEEEEEEEESS
T ss_pred             CCCCc-CCccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCC-ccccCc---hhhhhhceeeEEEeeccc
Confidence            99999 8888544 8999999999999999764  78999999999999994 444432   5566666  999999987


Q ss_pred             cccccccccccccccccccccCCC--CccEEEeecCCCcc-CCCc--ccccCccEEEEEeCCCCCCCcchhhhhhhhccc
Q 036269          191 CHWQFENEDDSRSNAKFIELGALS--RLTSLHIDIPEGEI-MPSD--MSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFK  265 (623)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~~-~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  265 (623)
                      +..         ....+..+..+.  .+ .+++++|.+.. ++..  ..+++|+.++++.+...   ...+......-..
T Consensus       181 l~~---------~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~---~~~l~~~~~~l~~  247 (562)
T 3a79_B          181 YHI---------KGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDEN---CQRLMTFLSELTR  247 (562)
T ss_dssp             CCC---------CSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTT---HHHHHHHHHHHHS
T ss_pred             ccc---------cccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccc---cchHHHHHHHHhc
Confidence            611         022334444443  22 34555555433 2322  56778888888876311   0001111111113


Q ss_pred             ccccceeeeccccccccchHHHHHH--HhhceeEeecccCCcccccccccccCccCccEEEEeccc--Cceeeccccccc
Q 036269          266 KRCSRAMGLSQDMRISALPSWIKNL--LLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCN--EMKYLLNSLERT  341 (623)
Q Consensus       266 ~~~l~~l~l~~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~l~~~~~~~~~~  341 (623)
                      .+.++.+.+......+.....+...  .++|++|++++|.....++..+.....++++.|.+.++.  .+ .++..... 
T Consensus       248 l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~-  325 (562)
T 3a79_B          248 GPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALY-  325 (562)
T ss_dssp             CSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHH-
T ss_pred             cCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhh-
Confidence            3455555555432211111111111  147888888887643233322211112445555444431  11 11111000 


Q ss_pred             ccccccccceeecccCcccccccccccCCCcCCCccEEEEeecCCcccccchhHHHhccccceEEEeccccceeeeeccc
Q 036269          342 LRVTLLKLEWLMIVDNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEIER  421 (623)
Q Consensus       342 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~  421 (623)
                      .....++|+.|+++++. +...    ...+.+++|+.|++++| .+++..|.. +..+++|++|++++ +.++.+...  
T Consensus       326 ~~~~~~~L~~L~l~~n~-~~~~----~~~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~L~~-N~l~~~~~~--  395 (562)
T 3a79_B          326 SVFAEMNIKMLSISDTP-FIHM----VCPPSPSSFTFLNFTQN-VFTDSVFQG-CSTLKRLQTLILQR-NGLKNFFKV--  395 (562)
T ss_dssp             HHHHTCCCSEEEEESSC-CCCC----CCCSSCCCCCEEECCSS-CCCTTTTTT-CCSCSSCCEEECCS-SCCCBTTHH--
T ss_pred             hhhccCcceEEEccCCC-cccc----cCccCCCCceEEECCCC-ccccchhhh-hcccCCCCEEECCC-CCcCCcccc--
Confidence            01112458888888876 2211    11146788999999884 565545544 67888999999988 677654210  


Q ss_pred             eeccccccccccCccEEecCCccchhh-cccCCCcccccCCccEEEEEcCCCcceeccCcccCcccchhhhhhccccccc
Q 036269          422 VNIAKEETELFSSLEKLTLIGLPRMTD-IWKGDTQFVSLHDLKKIRVVFCDELRQVFPANLGKKAAAEEMVLYRNRRDQI  500 (623)
Q Consensus       422 ~~~~~~~~~~~~~L~~L~l~~c~~l~~-i~~~~~~~~~l~~L~~L~l~~C~~l~~~~~~~l~~~~~L~~l~~~~~~~~~l  500 (623)
                          +..+..+++|++|++++|. ++. ++.  ..+..+++|++|++++| .++...|..+.  ++|+.|++.+|..   
T Consensus       396 ----~~~~~~l~~L~~L~l~~N~-l~~~~~~--~~~~~l~~L~~L~l~~n-~l~~~~~~~l~--~~L~~L~L~~N~l---  462 (562)
T 3a79_B          396 ----ALMTKNMSSLETLDVSLNS-LNSHAYD--RTCAWAESILVLNLSSN-MLTGSVFRCLP--PKVKVLDLHNNRI---  462 (562)
T ss_dssp             ----HHTTTTCTTCCEEECTTSC-CBSCCSS--CCCCCCTTCCEEECCSS-CCCGGGGSSCC--TTCSEEECCSSCC---
T ss_pred             ----hhhhcCCCCCCEEECCCCc-CCCccCh--hhhcCcccCCEEECCCC-CCCcchhhhhc--CcCCEEECCCCcC---
Confidence                3445678889999998884 443 421  12456788999999885 45444344433  6788888887754   


Q ss_pred             ceeccccCCCCCCCCCCccEEEEecCCCcceecchhhhhccCCCCEEEEccCC
Q 036269          501 HIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSRCP  553 (623)
Q Consensus       501 ~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~  553 (623)
                           ...|.++..+++|+.|++++ ++++.+++. .+..+++|+.|++++++
T Consensus       463 -----~~ip~~~~~l~~L~~L~L~~-N~l~~l~~~-~~~~l~~L~~L~l~~N~  508 (562)
T 3a79_B          463 -----MSIPKDVTHLQALQELNVAS-NQLKSVPDG-VFDRLTSLQYIWLHDNP  508 (562)
T ss_dssp             -----CCCCTTTTSSCCCSEEECCS-SCCCCCCTT-STTTCTTCCCEECCSCC
T ss_pred             -----cccChhhcCCCCCCEEECCC-CCCCCCCHH-HHhcCCCCCEEEecCCC
Confidence                 24566666788888888888 467776543 46778888888888876

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.97  E-value=5.1e-29  Score=272.29  Aligned_cols=506  Identities=15%  Similarity=0.112  Sum_probs=339.2

Q ss_pred             cEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCc-hhhhccccCcEEeccC
Q 036269           39 TGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLP-SSLSFLINLRTLSLHD  117 (623)
Q Consensus        39 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp-~~~~~l~~L~~L~l~~  117 (623)
                      ++.+-++..++++|..+. +.+++|+|++|.++.+++..|.++++|++|++++|.+   ..+| .+|.++++|++|++++
T Consensus        34 ~~~~c~~~~l~~vP~~lp-~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i---~~i~~~~f~~L~~L~~L~Ls~  109 (635)
T 4g8a_A           34 ITYQCMELNFYKIPDNLP-FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI---QTIEDGAYQSLSHLSTLILTG  109 (635)
T ss_dssp             TEEECTTSCCSSCCSSSC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC---CEECTTTTTTCTTCCEEECTT
T ss_pred             CEEECCCCCcCccCCCCC-cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcC---CCcChhHhcCCCCCCEEEccC
Confidence            455656667888887652 4799999999999998887789999999999999999   5665 4689999999999999


Q ss_pred             CcCCCCc--ccccCCcCCcEEEcCCCCCccccc-cccCCCccCEEeccCCCCCCc--CchhhhhccccCcEEEecccccc
Q 036269          118 CQHFGDL--SLIGELSLLEILDLSESDVSEIPV-SFGRLGHLRLLDLTDCYNLEL--IPRGVLSRLRKLEELYMSKTFCH  192 (623)
Q Consensus       118 ~~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~~--l~~~~~~~l~~L~~L~l~~~~~~  192 (623)
                      |. ++.+  ..+.++++|++|++++|.++.+|. .++++++|++|++++| .+..  .|. .++.+++|++|++++|.+.
T Consensus       110 N~-l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~-~~~~l~~L~~L~L~~N~l~  186 (635)
T 4g8a_A          110 NP-IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPE-YFSNLTNLEHLDLSSNKIQ  186 (635)
T ss_dssp             CC-CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCG-GGGGCTTCCEEECCSSCCC
T ss_pred             Cc-CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccC-ccccCCCch-hhccchhhhhhcccCcccc
Confidence            98 8877  468999999999999999998875 5899999999999995 4443  344 4789999999999999874


Q ss_pred             cccccccccccccccccccCCC-CccEEEeecCCCccCCCc-ccccCccEEEEEeCCCCCCCcchhhhhhhhcccccccc
Q 036269          193 WQFENEDDSRSNAKFIELGALS-RLTSLHIDIPEGEIMPSD-MSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSR  270 (623)
Q Consensus       193 ~~~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~  270 (623)
                      ...        ......+.+++ ....++++.|.+..++.. .....+..+.+..+....    ........  ....++
T Consensus       187 ~~~--------~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~----~~~~~~~~--~l~~l~  252 (635)
T 4g8a_A          187 SIY--------CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSL----NVMKTCIQ--GLAGLE  252 (635)
T ss_dssp             EEC--------GGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSH----HHHHHHHH--TTTTCE
T ss_pred             ccc--------cccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccc----cccchhhc--CCcccc
Confidence            221        11122233333 234678888887766655 444456666666543210    01111111  112222


Q ss_pred             eeeeccc-----cccccchHHHHHHHhhceeEeecccCCcccccc-cccccCccCccEEEEecccCceeecccccccccc
Q 036269          271 AMGLSQD-----MRISALPSWIKNLLLRSEILALGDVNDLENIVS-DLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRV  344 (623)
Q Consensus       271 ~l~l~~~-----~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~  344 (623)
                      ...+...     ................+....+........... ......+.+++.+.+.++ .+..+.      ...
T Consensus       253 ~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~------~~~  325 (635)
T 4g8a_A          253 VHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSV-TIERVK------DFS  325 (635)
T ss_dssp             EEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESC-EEEECG------GGG
T ss_pred             cccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccc-cccccc------ccc
Confidence            2222110     000011100011113444444432221111000 011244667888888877 333332      234


Q ss_pred             cccccceeecccCcccccccccccCCCcCCCccEEEEeecCCcccccchhHHHhccccceEEEeccccceeeeeccceec
Q 036269          345 TLLKLEWLMIVDNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEIERVNI  424 (623)
Q Consensus       345 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~  424 (623)
                      ....++.|++.++. +     ..++...++.|+.+.+.++ .......   ...+++|+.|++++ +.+......     
T Consensus       326 ~~~~L~~L~l~~~~-~-----~~~~~~~l~~L~~l~l~~n-~~~~~~~---~~~l~~L~~L~ls~-n~l~~~~~~-----  389 (635)
T 4g8a_A          326 YNFGWQHLELVNCK-F-----GQFPTLKLKSLKRLTFTSN-KGGNAFS---EVDLPSLEFLDLSR-NGLSFKGCC-----  389 (635)
T ss_dssp             SCCCCSEEEEESCE-E-----SSCCCCBCTTCCEEEEESC-CSCCBCC---CCBCTTCCEEECCS-SCCBEEEEC-----
T ss_pred             cchhhhhhhccccc-c-----cCcCcccchhhhhcccccc-cCCCCcc---cccccccccchhhc-ccccccccc-----
Confidence            46688999998876 2     2344456789999999874 3333222   23679999999999 666543211     


Q ss_pred             cccccccccCccEEecCCccchhhcccCCCcccccCCccEEEEEcCCCcceeccCcccCcccchhhhhhcccccccceec
Q 036269          425 AKEETELFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFCDELRQVFPANLGKKAAAEEMVLYRNRRDQIHIHA  504 (623)
Q Consensus       425 ~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~L~~L~l~~C~~l~~~~~~~l~~~~~L~~l~~~~~~~~~l~~~~  504 (623)
                       +......++|+.+++..+... .+   ......+++|+.+++.++.......+..+..+.+++.+++..|..       
T Consensus       390 -~~~~~~~~~L~~L~~~~~~~~-~~---~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l-------  457 (635)
T 4g8a_A          390 -SQSDFGTISLKYLDLSFNGVI-TM---SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT-------  457 (635)
T ss_dssp             -CHHHHSCSCCCEEECCSCSEE-EE---CSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCC-------
T ss_pred             -ccchhhhhhhhhhhccccccc-cc---cccccccccccchhhhhcccccccccccccccccccccccccccc-------
Confidence             334456789999999988543 22   344566899999999987666555556677888999998888744       


Q ss_pred             cccCCCCCCCCCCccEEEEecCCCcceecchhhhhccCCCCEEEEccCCchhhhhcCCCCcccCcCCCcceeecCcccce
Q 036269          505 TTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSRCPTLQEIIMNDEGEVGLQGASTEKITFPSLFSI  584 (623)
Q Consensus       505 ~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L  584 (623)
                      ....+..+..+++|+.|++++|..+..+.+ ..+..+++|++|++++|. ++.++..            ....+++|++|
T Consensus       458 ~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~-~~~~~l~~L~~L~Ls~N~-L~~l~~~------------~f~~l~~L~~L  523 (635)
T 4g8a_A          458 RVAFNGIFNGLSSLEVLKMAGNSFQENFLP-DIFTELRNLTFLDLSQCQ-LEQLSPT------------AFNSLSSLQVL  523 (635)
T ss_dssp             EECCTTTTTTCTTCCEEECTTCEEGGGEEC-SCCTTCTTCCEEECTTSC-CCEECTT------------TTTTCTTCCEE
T ss_pred             ccccccccccchhhhhhhhhhcccccccCc-hhhhhccccCEEECCCCc-cCCcChH------------HHcCCCCCCEE
Confidence            444566678899999999999876766544 357889999999999997 7777432            45678999999


Q ss_pred             ecccCcccceecCCCCcceeecCCccEEEeccCC
Q 036269          585 QLCLLDSLTCFCSSGSHATVEFLALEALQIIDCP  618 (623)
Q Consensus       585 ~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~c~  618 (623)
                      +|+++ +++.++. +.  ...+++|+.|+++++.
T Consensus       524 ~Ls~N-~l~~l~~-~~--~~~l~~L~~L~Ls~N~  553 (635)
T 4g8a_A          524 NMSHN-NFFSLDT-FP--YKCLNSLQVLDYSLNH  553 (635)
T ss_dssp             ECTTS-CCCBCCC-GG--GTTCTTCCEEECTTSC
T ss_pred             ECCCC-cCCCCCh-hH--HhCCCCCCEEECCCCc
Confidence            99997 6777654 22  2347899999999873

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.97  E-value=9.9e-30  Score=272.70  Aligned_cols=147  Identities=23%  Similarity=0.301  Sum_probs=120.3

Q ss_pred             CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCc-hhhhccccCcEEeccCCcCCCCc--ccccCCcC
Q 036269           56 QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLP-SSLSFLINLRTLSLHDCQHFGDL--SLIGELSL  132 (623)
Q Consensus        56 ~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~  132 (623)
                      .+...+++++++|.++.+|..+   .++|++|++++|.+   ..++ ..+.++++|++|++++|. +..+  ..++++++
T Consensus        29 ~~~~~~~l~ls~~~L~~ip~~~---~~~L~~L~Ls~N~i---~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~  101 (562)
T 3a79_B           29 SNELESMVDYSNRNLTHVPKDL---PPRTKALSLSQNSI---SELRMPDISFLSELRVLRLSHNR-IRSLDFHVFLFNQD  101 (562)
T ss_dssp             ----CCEEECTTSCCCSCCTTS---CTTCCEEECCSSCC---CCCCGGGTTTCTTCCEEECCSCC-CCEECTTTTTTCTT
T ss_pred             ccCCCcEEEcCCCCCccCCCCC---CCCcCEEECCCCCc---cccChhhhccCCCccEEECCCCC-CCcCCHHHhCCCCC
Confidence            4556689999999999999865   38999999999999   4554 689999999999999998 8776  56899999


Q ss_pred             CcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCch-hhhhccccCcEEEeccccccccccccccccccccccccc
Q 036269          133 LEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPR-GVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELG  211 (623)
Q Consensus       133 L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~  211 (623)
                      |++|++++|.++.+|..  .+++|++|++++| .+..++. ..++++++|++|++++|.+.           ..   .++
T Consensus       102 L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~n~l~-----------~~---~~~  164 (562)
T 3a79_B          102 LEYLDVSHNRLQNISCC--PMASLRHLDLSFN-DFDVLPVCKEFGNLTKLTFLGLSAAKFR-----------QL---DLL  164 (562)
T ss_dssp             CCEEECTTSCCCEECSC--CCTTCSEEECCSS-CCSBCCCCGGGGGCTTCCEEEEECSBCC-----------TT---TTG
T ss_pred             CCEEECCCCcCCccCcc--ccccCCEEECCCC-CccccCchHhhcccCcccEEecCCCccc-----------cC---chh
Confidence            99999999999999977  8999999999994 5665542 34899999999999999873           22   334


Q ss_pred             CCCCc--cEEEeecCCC
Q 036269          212 ALSRL--TSLHIDIPEG  226 (623)
Q Consensus       212 ~l~~L--~~L~l~~~~~  226 (623)
                      .+++|  +.|++++|.+
T Consensus       165 ~l~~L~L~~L~L~~n~l  181 (562)
T 3a79_B          165 PVAHLHLSCILLDLVSY  181 (562)
T ss_dssp             GGTTSCEEEEEEEESSC
T ss_pred             hhhhceeeEEEeecccc
Confidence            44455  9999999976

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.96  E-value=1.6e-28  Score=256.89  Aligned_cols=342  Identities=20%  Similarity=0.234  Sum_probs=215.6

Q ss_pred             CCCCCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEE
Q 036269           34 TFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTL  113 (623)
Q Consensus        34 ~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L  113 (623)
                      .+++++.|+++++.+..++....+++|++|++++|.+..+++  +.++++|++|++++|.+   ..++. +.++++|++|
T Consensus        44 ~l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l---~~~~~-~~~l~~L~~L  117 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQI---ADITP-LANLTNLTGL  117 (466)
T ss_dssp             HHHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC---CCCGG-GTTCTTCCEE
T ss_pred             HhccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCcc---ccChh-hcCCCCCCEE
Confidence            356788888888888888765578888888888888887776  68888889998888888   55555 7888888888


Q ss_pred             eccCCcCCCCcccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccccccc
Q 036269          114 SLHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHW  193 (623)
Q Consensus       114 ~l~~~~~l~~i~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~  193 (623)
                      ++++|. +.++..+.++++|++|++++|.+..++ .++++++|++|++.+  ....++.  +.++++|+.|++++|.+. 
T Consensus       118 ~L~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~--~~~~~~~--~~~l~~L~~L~l~~n~l~-  190 (466)
T 1o6v_A          118 TLFNNQ-ITDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGN--QVTDLKP--LANLTTLERLDISSNKVS-  190 (466)
T ss_dssp             ECCSSC-CCCCGGGTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEE--SCCCCGG--GTTCTTCCEEECCSSCCC-
T ss_pred             ECCCCC-CCCChHHcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCC--cccCchh--hccCCCCCEEECcCCcCC-
Confidence            888887 777766888888888888888888776 478888888888864  3444443  778888888888888762 


Q ss_pred             ccccccccccccccccccCCCCccEEEeecCCCccCCCcccccCccEEEEEeCCCCCCCcchhhhhhhhcccccccceee
Q 036269          194 QFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSDMSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSRAMG  273 (623)
Q Consensus       194 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  273 (623)
                                  ....++.+++|+.|++++|.+..++....+++|+.|+++++.....+                     
T Consensus       191 ------------~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~---------------------  237 (466)
T 1o6v_A          191 ------------DISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG---------------------  237 (466)
T ss_dssp             ------------CCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG---------------------
T ss_pred             ------------CChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccch---------------------
Confidence                        12346778888888888887666554555667777776655422110                     


Q ss_pred             eccccccccchHHHHHHHhhceeEeecccCCcccccccccccCccCccEEEEecccCceeecccccccccccccccceee
Q 036269          274 LSQDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLLKLEWLM  353 (623)
Q Consensus       274 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~  353 (623)
                                  .+.. +++|+.|++++|... ...+   ...+++|+.|++++| .+..++      ....+++|+.|+
T Consensus       238 ------------~l~~-l~~L~~L~l~~n~l~-~~~~---~~~l~~L~~L~l~~n-~l~~~~------~~~~l~~L~~L~  293 (466)
T 1o6v_A          238 ------------TLAS-LTNLTDLDLANNQIS-NLAP---LSGLTKLTELKLGAN-QISNIS------PLAGLTALTNLE  293 (466)
T ss_dssp             ------------GGGG-CTTCSEEECCSSCCC-CCGG---GTTCTTCSEEECCSS-CCCCCG------GGTTCTTCSEEE
T ss_pred             ------------hhhc-CCCCCEEECCCCccc-cchh---hhcCCCCCEEECCCC-ccCccc------cccCCCccCeEE
Confidence                        0000 155666666665432 1111   244566666666666 333322      133455666666


Q ss_pred             cccCcccccccccccCCCcCCCccEEEEeecCCcccccchhHHHhccccceEEEeccccceeeeeccceecccccccccc
Q 036269          354 IVDNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEIERVNIAKEETELFS  433 (623)
Q Consensus       354 l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~  433 (623)
                      ++++. ++.    ..+.+.+++|+.|++++| .+++..|   +..+++|+.|++++ +.++.+          ..+..++
T Consensus       294 L~~n~-l~~----~~~~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~l~~-n~l~~~----------~~l~~l~  353 (466)
T 1o6v_A          294 LNENQ-LED----ISPISNLKNLTYLTLYFN-NISDISP---VSSLTKLQRLFFYN-NKVSDV----------SSLANLT  353 (466)
T ss_dssp             CCSSC-CSC----CGGGGGCTTCSEEECCSS-CCSCCGG---GGGCTTCCEEECCS-SCCCCC----------GGGTTCT
T ss_pred             cCCCc-ccC----chhhcCCCCCCEEECcCC-cCCCchh---hccCccCCEeECCC-CccCCc----------hhhccCC
Confidence            66554 222    122345556666666654 3443222   34556666666665 344432          1234455


Q ss_pred             CccEEecCCccchhhcccCCCcccccCCccEEEEEcC
Q 036269          434 SLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFC  470 (623)
Q Consensus       434 ~L~~L~l~~c~~l~~i~~~~~~~~~l~~L~~L~l~~C  470 (623)
                      +|+.|++++| .++++    .....+++|++|++++|
T Consensus       354 ~L~~L~l~~n-~l~~~----~~~~~l~~L~~L~l~~n  385 (466)
T 1o6v_A          354 NINWLSAGHN-QISDL----TPLANLTRITQLGLNDQ  385 (466)
T ss_dssp             TCCEEECCSS-CCCBC----GGGTTCTTCCEEECCCE
T ss_pred             CCCEEeCCCC-ccCcc----chhhcCCCCCEEeccCC
Confidence            6666666655 23332    11444555666666553

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.95  E-value=6.4e-27  Score=244.59  Aligned_cols=163  Identities=25%  Similarity=0.340  Sum_probs=86.8

Q ss_pred             CCCCCCCCCCCCCCCCcEEEcccCCcccccc-cC-CCCCcceEEccCCCCC-CCChhhHhCCCcccEEEccCCcccccCC
Q 036269           23 GVELKDWPSINTFEDLTGISLMFNDIHEVHE-GL-QCPRLQALFLQKNDLL-DIPDPFFQGMKDLKVLDLGGSGVFSLFS   99 (623)
Q Consensus        23 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~-~l~~~~~~~l~~Lr~L~l~~~~~~~~~~   99 (623)
                      +.++..+|.  ..+++++|++++|.++.+++ .+ .+++|++|++++|.+. .++...|.++++|++|++++|.+.  +.
T Consensus        19 ~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~--~~   94 (455)
T 3v47_A           19 NRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL--QL   94 (455)
T ss_dssp             SSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTC--EE
T ss_pred             CCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccC--cc
Confidence            344555554  23556666666666655522 23 5666666666666554 444444566666666666666653  33


Q ss_pred             CchhhhccccCcEEeccCCcCCCC--cc--cccCCcCCcEEEcCCCCCccc-ccc-ccCCCccCEEeccCCCCCCcCchh
Q 036269          100 LPSSLSFLINLRTLSLHDCQHFGD--LS--LIGELSLLEILDLSESDVSEI-PVS-FGRLGHLRLLDLTDCYNLELIPRG  173 (623)
Q Consensus       100 lp~~~~~l~~L~~L~l~~~~~l~~--i~--~~~~l~~L~~L~l~~~~i~~l-p~~-i~~l~~L~~L~l~~~~~~~~l~~~  173 (623)
                      .|..+.++++|++|++++|. +..  +.  .++.+++|++|++++|.+..+ |.. +.++++|++|++++|. +..++..
T Consensus        95 ~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~  172 (455)
T 3v47_A           95 ETGAFNGLANLEVLTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK-VKSICEE  172 (455)
T ss_dssp             CTTTTTTCTTCCEEECTTSC-CBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC-BSCCCTT
T ss_pred             ChhhccCcccCCEEeCCCCC-CCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc-ccccChh
Confidence            35556666666666666665 543  12  255566666666666665544 333 5556666666666533 2223222


Q ss_pred             hhhcc--ccCcEEEeccccc
Q 036269          174 VLSRL--RKLEELYMSKTFC  191 (623)
Q Consensus       174 ~~~~l--~~L~~L~l~~~~~  191 (623)
                      .+..+  .+|+.|++++|.+
T Consensus       173 ~l~~l~~~~L~~L~l~~n~l  192 (455)
T 3v47_A          173 DLLNFQGKHFTLLRLSSITL  192 (455)
T ss_dssp             TSGGGTTCEEEEEECTTCBC
T ss_pred             hhhccccccccccccccCcc
Confidence            23333  4455555555443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.95  E-value=1.9e-26  Score=241.07  Aligned_cols=337  Identities=20%  Similarity=0.284  Sum_probs=269.6

Q ss_pred             cCCCCCCCCCCCCCCCCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCc
Q 036269           22 AGVELKDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLP  101 (623)
Q Consensus        22 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp  101 (623)
                      .+..+..+|.+..++++++|++++|.++.+++...+++|++|++++|.+..+++  +.++++|++|++++|.+   ..++
T Consensus        54 ~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l---~~~~  128 (466)
T 1o6v_A           54 DRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQI---TDID  128 (466)
T ss_dssp             CSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC---CCCG
T ss_pred             CCCCCccCcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCC---CCCh
Confidence            345677888888899999999999999999885599999999999999998877  69999999999999998   5666


Q ss_pred             hhhhccccCcEEeccCCcCCCCcccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccC
Q 036269          102 SSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKL  181 (623)
Q Consensus       102 ~~~~~l~~L~~L~l~~~~~l~~i~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L  181 (623)
                      . +..+++|++|++++|. +..++.++.+++|++|+++ +.+..++ .+.++++|++|++++| .+..++.  +..+++|
T Consensus       129 ~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~-~~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L  201 (466)
T 1o6v_A          129 P-LKNLTNLNRLELSSNT-ISDISALSGLTSLQQLSFG-NQVTDLK-PLANLTTLERLDISSN-KVSDISV--LAKLTNL  201 (466)
T ss_dssp             G-GTTCTTCSEEEEEEEE-ECCCGGGTTCTTCSEEEEE-ESCCCCG-GGTTCTTCCEEECCSS-CCCCCGG--GGGCTTC
T ss_pred             H-HcCCCCCCEEECCCCc-cCCChhhccCCcccEeecC-CcccCch-hhccCCCCCEEECcCC-cCCCChh--hccCCCC
Confidence            5 8899999999999998 8888789999999999997 4555554 3899999999999995 4666664  8899999


Q ss_pred             cEEEecccccccccccccccccccccccccCCCCccEEEeecCCCccCCCcccccCccEEEEEeCCCCCCCcchhhhhhh
Q 036269          182 EELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSDMSFQNLTSFSITIGGPEEVPLSDFIEVFS  261 (623)
Q Consensus       182 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  261 (623)
                      +.|++++|.+.            .. ..++.+++|+.|++++|.+..++....+++|+.|+++++.....+         
T Consensus       202 ~~L~l~~n~l~------------~~-~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~---------  259 (466)
T 1o6v_A          202 ESLIATNNQIS------------DI-TPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA---------  259 (466)
T ss_dssp             SEEECCSSCCC------------CC-GGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCG---------
T ss_pred             CEEEecCCccc------------cc-ccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccch---------
Confidence            99999999873            11 227789999999999999887766678899999999887643221         


Q ss_pred             hcccccccceeeeccccccccchHHHHHHHhhceeEeecccCCcccccccccccCccCccEEEEecccCceeeccccccc
Q 036269          262 RKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERT  341 (623)
Q Consensus       262 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~  341 (623)
                                             . +.. +++|++|++++|... ...+ +  ..+++|+.|++++| .++.++      
T Consensus       260 -----------------------~-~~~-l~~L~~L~l~~n~l~-~~~~-~--~~l~~L~~L~L~~n-~l~~~~------  303 (466)
T 1o6v_A          260 -----------------------P-LSG-LTKLTELKLGANQIS-NISP-L--AGLTALTNLELNEN-QLEDIS------  303 (466)
T ss_dssp             -----------------------G-GTT-CTTCSEEECCSSCCC-CCGG-G--TTCTTCSEEECCSS-CCSCCG------
T ss_pred             -----------------------h-hhc-CCCCCEEECCCCccC-cccc-c--cCCCccCeEEcCCC-cccCch------
Confidence                                   1 111 278999999887643 3222 3  57899999999999 555443      


Q ss_pred             ccccccccceeecccCcccccccccccCCCcCCCccEEEEeecCCcccccchhHHHhccccceEEEeccccceeeeeccc
Q 036269          342 LRVTLLKLEWLMIVDNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEIER  421 (623)
Q Consensus       342 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~  421 (623)
                      ....+++|+.|++++|. ++    +..+.+.+++|+.|++++| .+++. +  .+..+++|+.|++++ +.++++.    
T Consensus       304 ~~~~l~~L~~L~L~~n~-l~----~~~~~~~l~~L~~L~l~~n-~l~~~-~--~l~~l~~L~~L~l~~-n~l~~~~----  369 (466)
T 1o6v_A          304 PISNLKNLTYLTLYFNN-IS----DISPVSSLTKLQRLFFYNN-KVSDV-S--SLANLTNINWLSAGH-NQISDLT----  369 (466)
T ss_dssp             GGGGCTTCSEEECCSSC-CS----CCGGGGGCTTCCEEECCSS-CCCCC-G--GGTTCTTCCEEECCS-SCCCBCG----
T ss_pred             hhcCCCCCCEEECcCCc-CC----CchhhccCccCCEeECCCC-ccCCc-h--hhccCCCCCEEeCCC-CccCccc----
Confidence            35678999999999997 33    3344568899999999996 56653 3  267899999999999 5677653    


Q ss_pred             eeccccccccccCccEEecCCccchhhc
Q 036269          422 VNIAKEETELFSSLEKLTLIGLPRMTDI  449 (623)
Q Consensus       422 ~~~~~~~~~~~~~L~~L~l~~c~~l~~i  449 (623)
                          +  +..+++|+.|++++|+ ++.+
T Consensus       370 ----~--~~~l~~L~~L~l~~n~-~~~~  390 (466)
T 1o6v_A          370 ----P--LANLTRITQLGLNDQA-WTNA  390 (466)
T ss_dssp             ----G--GTTCTTCCEEECCCEE-EECC
T ss_pred             ----h--hhcCCCCCEEeccCCc-ccCC
Confidence                2  6779999999999994 4443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.95  E-value=2e-26  Score=231.67  Aligned_cols=304  Identities=17%  Similarity=0.212  Sum_probs=159.9

Q ss_pred             CCCCCCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcE
Q 036269           33 NTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRT  112 (623)
Q Consensus        33 ~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~  112 (623)
                      ..++++++|+++++.+..++....+++|++|++++|.+.+++.  +.++++|++|++++|.+   ..++ .+..+++|++
T Consensus        41 ~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i---~~~~-~~~~l~~L~~  114 (347)
T 4fmz_A           41 EELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI---TDIS-ALQNLTNLRE  114 (347)
T ss_dssp             HHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC---CCCG-GGTTCTTCSE
T ss_pred             hhcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcc---cCch-HHcCCCcCCE
Confidence            3445555566655555555443355555555555555555444  45555555555555555   3332 3555555555


Q ss_pred             EeccCCcCCCCcccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecccccc
Q 036269          113 LSLHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCH  192 (623)
Q Consensus       113 L~l~~~~~l~~i~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~  192 (623)
                      |++++|. +..+..+..+++|++|++++|.....+..+..+++|++|++++| .+..++.  +..+++|++|++++|.+.
T Consensus       115 L~l~~n~-i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~--~~~l~~L~~L~l~~n~l~  190 (347)
T 4fmz_A          115 LYLNEDN-ISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES-KVKDVTP--IANLTDLYSLSLNYNQIE  190 (347)
T ss_dssp             EECTTSC-CCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECTTSCCC
T ss_pred             EECcCCc-ccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCC-CcCCchh--hccCCCCCEEEccCCccc
Confidence            5555555 54444455555555555555533322223555555555555552 2333333  445555555555555441


Q ss_pred             cccccccccccccccccccCCCCccEEEeecCCCccCCCcccccCccEEEEEeCCCCCCCcchhhhhhhhccccccccee
Q 036269          193 WQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSDMSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSRAM  272 (623)
Q Consensus       193 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  272 (623)
                                  .. ..+..+++|+.+++++|.+..++....+                                     
T Consensus       191 ------------~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~-------------------------------------  220 (347)
T 4fmz_A          191 ------------DI-SPLASLTSLHYFTAYVNQITDITPVANM-------------------------------------  220 (347)
T ss_dssp             ------------CC-GGGGGCTTCCEEECCSSCCCCCGGGGGC-------------------------------------
T ss_pred             ------------cc-ccccCCCccceeecccCCCCCCchhhcC-------------------------------------
Confidence                        11 1144444555555544443222211122                                     


Q ss_pred             eeccccccccchHHHHHHHhhceeEeecccCCcccccccccccCccCccEEEEecccCceeeccccccccccccccccee
Q 036269          273 GLSQDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLLKLEWL  352 (623)
Q Consensus       273 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L  352 (623)
                                         ++|++|++++|... ...+   ...+++|++|++++| .++.+.      ....+++|+.|
T Consensus       221 -------------------~~L~~L~l~~n~l~-~~~~---~~~l~~L~~L~l~~n-~l~~~~------~~~~l~~L~~L  270 (347)
T 4fmz_A          221 -------------------TRLNSLKIGNNKIT-DLSP---LANLSQLTWLEIGTN-QISDIN------AVKDLTKLKML  270 (347)
T ss_dssp             -------------------TTCCEEECCSSCCC-CCGG---GTTCTTCCEEECCSS-CCCCCG------GGTTCTTCCEE
T ss_pred             -------------------CcCCEEEccCCccC-CCcc---hhcCCCCCEEECCCC-ccCCCh------hHhcCCCcCEE
Confidence                               45566666555422 1111   245677777777777 444432      34456677777


Q ss_pred             ecccCcccccccccccCCCcCCCccEEEEeecCCcccccchhHHHhccccceEEEeccccceeeeeccceeccccccccc
Q 036269          353 MIVDNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEIERVNIAKEETELF  432 (623)
Q Consensus       353 ~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~  432 (623)
                      ++++|. ++.+    .....+++|+.|++++| .+++..+ ..+..+++|++|++++ +.++++         +. +..+
T Consensus       271 ~l~~n~-l~~~----~~~~~l~~L~~L~L~~n-~l~~~~~-~~l~~l~~L~~L~L~~-n~l~~~---------~~-~~~l  332 (347)
T 4fmz_A          271 NVGSNQ-ISDI----SVLNNLSQLNSLFLNNN-QLGNEDM-EVIGGLTNLTTLFLSQ-NHITDI---------RP-LASL  332 (347)
T ss_dssp             ECCSSC-CCCC----GGGGGCTTCSEEECCSS-CCCGGGH-HHHHTCTTCSEEECCS-SSCCCC---------GG-GGGC
T ss_pred             EccCCc-cCCC----hhhcCCCCCCEEECcCC-cCCCcCh-hHhhccccCCEEEccC-Cccccc---------cC-hhhh
Confidence            777764 3332    11345677777777775 4444333 3367777788888877 446554         22 4567


Q ss_pred             cCccEEecCCcc
Q 036269          433 SSLEKLTLIGLP  444 (623)
Q Consensus       433 ~~L~~L~l~~c~  444 (623)
                      ++|++|++++|+
T Consensus       333 ~~L~~L~l~~N~  344 (347)
T 4fmz_A          333 SKMDSADFANQV  344 (347)
T ss_dssp             TTCSEESSSCC-
T ss_pred             hccceeehhhhc
Confidence            777777777763

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.95  E-value=1e-26  Score=243.03  Aligned_cols=367  Identities=17%  Similarity=0.178  Sum_probs=265.7

Q ss_pred             CcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCC-chhhhccccCcEEecc
Q 036269           38 LTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSL-PSSLSFLINLRTLSLH  116 (623)
Q Consensus        38 l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~l-p~~~~~l~~L~~L~l~  116 (623)
                      -+.++.+++.++.+|. . .++|++|++++|.+..+++..|.++++|++|++++|.+.  ..+ +..+..+++|++|+++
T Consensus        12 ~~~~~c~~~~l~~lp~-l-~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~--~~i~~~~~~~l~~L~~L~Ls   87 (455)
T 3v47_A           12 GYNAICINRGLHQVPE-L-PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPG--LVIRNNTFRGLSSLIILKLD   87 (455)
T ss_dssp             TTEEECCSSCCSSCCC-C-CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTT--CEECTTTTTTCTTCCEEECT
T ss_pred             ccccCcCCCCcccCCC-C-CCccCEEEecCCccCcCChhHhccCccccEEECcCCccc--ceECcccccccccCCEEeCC
Confidence            3467788888888887 2 378999999999999765555799999999999999884  355 4568999999999999


Q ss_pred             CCcCCCCc--ccccCCcCCcEEEcCCCCCcc-cccc--ccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccccc
Q 036269          117 DCQHFGDL--SLIGELSLLEILDLSESDVSE-IPVS--FGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFC  191 (623)
Q Consensus       117 ~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~-lp~~--i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~  191 (623)
                      +|. +..+  ..++++++|++|++++|.++. .|..  +.++++|++|++++|......|..++.++++|++|++++|.+
T Consensus        88 ~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l  166 (455)
T 3v47_A           88 YNQ-FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV  166 (455)
T ss_dssp             TCT-TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred             CCc-cCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence            999 8665  578999999999999999984 4544  899999999999996544444655588999999999999987


Q ss_pred             ccccccccccccccccccccCC--CCccEEEeecCCCccCCCc----------ccccCccEEEEEeCCCCCCCcchhhhh
Q 036269          192 HWQFENEDDSRSNAKFIELGAL--SRLTSLHIDIPEGEIMPSD----------MSFQNLTSFSITIGGPEEVPLSDFIEV  259 (623)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~----------~~~~~L~~L~l~~~~~~~~~~~~~~~~  259 (623)
                      .           ...+..+..+  .+|+.|+++++.+..++..          ..+++|+.|+++++......+..+.. 
T Consensus       167 ~-----------~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~-  234 (455)
T 3v47_A          167 K-----------SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFD-  234 (455)
T ss_dssp             S-----------CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHH-
T ss_pred             c-----------ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhc-
Confidence            4           2334445444  6889999999987666543          24578999999887643322111111 


Q ss_pred             hhhcccccccceeeeccccccccchHHHHHHHhhceeEeecccCCccccc----------ccccccCccCccEEEEeccc
Q 036269          260 FSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEILALGDVNDLENIV----------SDLAHDGFNELMFLAIVGCN  329 (623)
Q Consensus       260 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----------~~~~~~~~~~L~~L~l~~~~  329 (623)
                         ....                         .+++.|+++++.......          ..+.....++|+.|+++++ 
T Consensus       235 ---~~~~-------------------------~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n-  285 (455)
T 3v47_A          235 ---AIAG-------------------------TKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKS-  285 (455)
T ss_dssp             ---HTTT-------------------------CCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSS-
T ss_pred             ---cccc-------------------------cceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCc-
Confidence               1111                         345555555443221110          0111113468999999999 


Q ss_pred             CceeecccccccccccccccceeecccCcccccccccccCCCcCCCccEEEEeecCCcccccchhHHHhccccceEEEec
Q 036269          330 EMKYLLNSLERTLRVTLLKLEWLMIVDNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEG  409 (623)
Q Consensus       330 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~  409 (623)
                      .+..+...    ....+++|+.|+++++. +.......  .+.+++|+.|++++| .+++..+. .+..+++|++|++++
T Consensus       286 ~l~~~~~~----~~~~l~~L~~L~Ls~n~-l~~~~~~~--~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~Ls~  356 (455)
T 3v47_A          286 KIFALLKS----VFSHFTDLEQLTLAQNE-INKIDDNA--FWGLTHLLKLNLSQN-FLGSIDSR-MFENLDKLEVLDLSY  356 (455)
T ss_dssp             CCCEECTT----TTTTCTTCCEEECTTSC-CCEECTTT--TTTCTTCCEEECCSS-CCCEECGG-GGTTCTTCCEEECCS
T ss_pred             cccccchh----hcccCCCCCEEECCCCc-ccccChhH--hcCcccCCEEECCCC-ccCCcChh-HhcCcccCCEEECCC
Confidence            55554332    45668899999999987 43332212  346899999999995 66664444 478899999999999


Q ss_pred             cccceeeeeccceeccccccccccCccEEecCCccchhhcccCCCcccccCCccEEEEEcCC
Q 036269          410 CELLVSVFEIERVNIAKEETELFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFCD  471 (623)
Q Consensus       410 c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~L~~L~l~~C~  471 (623)
                       +.++.+.        +..+..+++|++|++++| .++.+..  ..+..+++|++|++++++
T Consensus       357 -N~l~~~~--------~~~~~~l~~L~~L~L~~N-~l~~~~~--~~~~~l~~L~~L~l~~N~  406 (455)
T 3v47_A          357 -NHIRALG--------DQSFLGLPNLKELALDTN-QLKSVPD--GIFDRLTSLQKIWLHTNP  406 (455)
T ss_dssp             -SCCCEEC--------TTTTTTCTTCCEEECCSS-CCSCCCT--TTTTTCTTCCEEECCSSC
T ss_pred             -CcccccC--------hhhccccccccEEECCCC-ccccCCH--hHhccCCcccEEEccCCC
Confidence             6777764        566778999999999998 5766522  234678999999999953

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.95  E-value=6e-27  Score=242.72  Aligned_cols=187  Identities=16%  Similarity=0.128  Sum_probs=148.6

Q ss_pred             CCCCCCCCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccC
Q 036269           31 SINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINL  110 (623)
Q Consensus        31 ~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L  110 (623)
                      .+..++++++|++++|.++.+|....+++|++|++++|.+..++   +..+++|++|++++|.+   ..++  +..+++|
T Consensus        37 ~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l---~~~~--~~~l~~L  108 (457)
T 3bz5_A           37 SEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKL---TNLD--VTPLTKL  108 (457)
T ss_dssp             EHHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCC---SCCC--CTTCTTC
T ss_pred             ChhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCC---ceee--cCCCCcC
Confidence            34557889999999999988875448899999999999988775   58899999999999988   4554  7788999


Q ss_pred             cEEeccCCcCCCCcccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecccc
Q 036269          111 RTLSLHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTF  190 (623)
Q Consensus       111 ~~L~l~~~~~l~~i~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~  190 (623)
                      ++|++++|. +..++ ++.+++|++|++++|.++.++  ++++++|++|++++|..++.++   +..+++|+.|++++|.
T Consensus       109 ~~L~L~~N~-l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~  181 (457)
T 3bz5_A          109 TYLNCDTNK-LTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNK  181 (457)
T ss_dssp             CEEECCSSC-CSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSC
T ss_pred             CEEECCCCc-CCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCc
Confidence            999999998 87765 788899999999999888875  7888999999999876777774   6788899999999887


Q ss_pred             cccccccccccccccccccccCCCCccEEEeecCCCccCCCcccccCccEEEEEeCC
Q 036269          191 CHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSDMSFQNLTSFSITIGG  247 (623)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~  247 (623)
                      +.            .++  ++.+++|+.|++++|.+..++ ...+++|+.|+++++.
T Consensus       182 l~------------~l~--l~~l~~L~~L~l~~N~l~~~~-l~~l~~L~~L~Ls~N~  223 (457)
T 3bz5_A          182 IT------------ELD--VSQNKLLNRLNCDTNNITKLD-LNQNIQLTFLDCSSNK  223 (457)
T ss_dssp             CC------------CCC--CTTCTTCCEEECCSSCCSCCC-CTTCTTCSEEECCSSC
T ss_pred             cc------------eec--cccCCCCCEEECcCCcCCeec-cccCCCCCEEECcCCc
Confidence            72            222  778888899998888776552 3455666666666554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.95  E-value=6.7e-27  Score=242.16  Aligned_cols=343  Identities=18%  Similarity=0.169  Sum_probs=187.7

Q ss_pred             CCCcEEEcccCCcccccccC-CCCCcceEEccCCCCC-CCChhhHhCCCcc-------------cEEEccCCcccccCCC
Q 036269           36 EDLTGISLMFNDIHEVHEGL-QCPRLQALFLQKNDLL-DIPDPFFQGMKDL-------------KVLDLGGSGVFSLFSL  100 (623)
Q Consensus        36 ~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~-~l~~~~~~~l~~L-------------r~L~l~~~~~~~~~~l  100 (623)
                      ..++.++++++.++.+|+.+ ++++|++|++++|.+. .+|..+ .++++|             ++|++++|.+   ..+
T Consensus        11 ~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~l~l~~c~~~~l~~L~l~~~~l---~~l   86 (454)
T 1jl5_A           11 TFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGN-GEQREMAVSRLRDCLDRQAHELELNNLGL---SSL   86 (454)
T ss_dssp             -----------------------CCHHHHHHHHHHHHHTSCTTS-CCCHHHHHHHHHHHHHHTCSEEECTTSCC---SCC
T ss_pred             ccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCccc-ccchhcchhhhhhhhccCCCEEEecCCcc---ccC
Confidence            56777777777777777666 6777777777777665 555543 555543             7777777776   455


Q ss_pred             chhhhccccCcEEeccCCcCCCCcccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhcccc
Q 036269          101 PSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRK  180 (623)
Q Consensus       101 p~~~~~l~~L~~L~l~~~~~l~~i~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~  180 (623)
                      |..   .++|++|++++|. ++.++.  .+.+|++|++++|.++.+|..   .++|++|++++| .++.+| + ++++++
T Consensus        87 p~~---~~~L~~L~l~~n~-l~~lp~--~~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n-~l~~lp-~-~~~l~~  154 (454)
T 1jl5_A           87 PEL---PPHLESLVASCNS-LTELPE--LPQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNN-QLEKLP-E-LQNSSF  154 (454)
T ss_dssp             CSC---CTTCSEEECCSSC-CSSCCC--CCTTCCEEECCSSCCSCCCSC---CTTCCEEECCSS-CCSSCC-C-CTTCTT
T ss_pred             CCC---cCCCCEEEccCCc-CCcccc--ccCCCcEEECCCCccCcccCC---CCCCCEEECcCC-CCCCCc-c-cCCCCC
Confidence            542   3567777777776 655532  236677777777777665532   157777777773 444566 3 677777


Q ss_pred             CcEEEecccccccccccccccccccccccccCCCCccEEEeecCCCccCCCcccccCccEEEEEeCCCCCCCcchhhhhh
Q 036269          181 LEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSDMSFQNLTSFSITIGGPEEVPLSDFIEVF  260 (623)
Q Consensus       181 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  260 (623)
                      |++|++++|.+.            .++..   ..+|+.|++++|.+..+|....+++|+.|+++++.....+        
T Consensus       155 L~~L~l~~N~l~------------~lp~~---~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~--------  211 (454)
T 1jl5_A          155 LKIIDVDNNSLK------------KLPDL---PPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLP--------  211 (454)
T ss_dssp             CCEEECCSSCCS------------CCCCC---CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCC--------
T ss_pred             CCEEECCCCcCc------------ccCCC---cccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcCC--------
Confidence            777777777652            12221   2367777777777666664466677777776665433221        


Q ss_pred             hhcccccccceeeeccccccccchHHHHHHHhhceeEeecccCCcccccccccccCccCccEEEEecccCceeecccccc
Q 036269          261 SRKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLER  340 (623)
Q Consensus       261 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~  340 (623)
                                           ..+       ++|++|++++|.. ..+ +.+  ..+++|+.|++++| .++.++.    
T Consensus       212 ---------------------~~~-------~~L~~L~l~~n~l-~~l-p~~--~~l~~L~~L~l~~N-~l~~l~~----  254 (454)
T 1jl5_A          212 ---------------------DLP-------LSLESIVAGNNIL-EEL-PEL--QNLPFLTTIYADNN-LLKTLPD----  254 (454)
T ss_dssp             ---------------------CCC-------TTCCEEECCSSCC-SSC-CCC--TTCTTCCEEECCSS-CCSSCCS----
T ss_pred             ---------------------CCc-------CcccEEECcCCcC-Ccc-ccc--CCCCCCCEEECCCC-cCCcccc----
Confidence                                 111       3677777776643 232 232  46677777777776 4443321    


Q ss_pred             cccccccccceeecccCcccccccccccCCCcCCCccEEEEeecCCcccccchhHHHhccccceEEEeccccceeeeecc
Q 036269          341 TLRVTLLKLEWLMIVDNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEIE  420 (623)
Q Consensus       341 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~  420 (623)
                          .+++|+.|+++++. ++.     +|. ..++|+.|++++| .+++ +|..    .++|++|++++ +.++.+    
T Consensus       255 ----~~~~L~~L~l~~N~-l~~-----l~~-~~~~L~~L~ls~N-~l~~-l~~~----~~~L~~L~l~~-N~l~~i----  312 (454)
T 1jl5_A          255 ----LPPSLEALNVRDNY-LTD-----LPE-LPQSLTFLDVSEN-IFSG-LSEL----PPNLYYLNASS-NEIRSL----  312 (454)
T ss_dssp             ----CCTTCCEEECCSSC-CSC-----CCC-CCTTCCEEECCSS-CCSE-ESCC----CTTCCEEECCS-SCCSEE----
T ss_pred             ----cccccCEEECCCCc-ccc-----cCc-ccCcCCEEECcCC-ccCc-ccCc----CCcCCEEECcC-CcCCcc----
Confidence                24677777777765 222     221 2367777777774 4444 2211    15677777777 555544    


Q ss_pred             ceeccccccccccCccEEecCCccchhhcccCCCcccccCCccEEEEEcCCCcceeccCcccCcccchhhhhhccc
Q 036269          421 RVNIAKEETELFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFCDELRQVFPANLGKKAAAEEMVLYRNR  496 (623)
Q Consensus       421 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~L~~L~l~~C~~l~~~~~~~l~~~~~L~~l~~~~~~  496 (623)
                           +.   ..++|++|++++| .++.+   +.   .+++|++|++++| .++.+ |.   .+++|++|++.+|.
T Consensus       313 -----~~---~~~~L~~L~Ls~N-~l~~l---p~---~~~~L~~L~L~~N-~l~~l-p~---~l~~L~~L~L~~N~  368 (454)
T 1jl5_A          313 -----CD---LPPSLEELNVSNN-KLIEL---PA---LPPRLERLIASFN-HLAEV-PE---LPQNLKQLHVEYNP  368 (454)
T ss_dssp             -----CC---CCTTCCEEECCSS-CCSCC---CC---CCTTCCEEECCSS-CCSCC-CC---CCTTCCEEECCSSC
T ss_pred             -----cC---CcCcCCEEECCCC-ccccc---cc---cCCcCCEEECCCC-ccccc-cc---hhhhccEEECCCCC
Confidence                 11   1247777777776 45544   21   1467777777774 55554 22   34566666666653

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.95  E-value=6.2e-27  Score=242.38  Aligned_cols=315  Identities=19%  Similarity=0.133  Sum_probs=176.4

Q ss_pred             cccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccC-------------cEEeccCC
Q 036269           52 HEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINL-------------RTLSLHDC  118 (623)
Q Consensus        52 ~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L-------------~~L~l~~~  118 (623)
                      |+.+..++|+.|++++|.+..+|.++ +++++|++|++++|.+.  +.+|..++.+++|             ++|++++|
T Consensus         5 p~~~~~~~L~~L~l~~n~l~~iP~~i-~~L~~L~~L~l~~n~~~--~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~   81 (454)
T 1jl5_A            5 PRNVSNTFLQEPLRHSSNLTEMPVEA-ENVKSKTEYYNAWSEWE--RNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL   81 (454)
T ss_dssp             ------------------------------CCHHHHHHHHHHHH--HTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS
T ss_pred             ccccccccchhhhcccCchhhCChhH-hcccchhhhhccCCccc--ccCCcccccchhcchhhhhhhhccCCCEEEecCC
Confidence            34446688999999999998998875 99999999999999986  6899888887765             88888888


Q ss_pred             cCCCCcccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecccccccccccc
Q 036269          119 QHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENE  198 (623)
Q Consensus       119 ~~l~~i~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~  198 (623)
                      . ++.++.+  .++|++|++++|.++.+|..   +++|++|++++ +.+..++..    .++|++|++++|.+.      
T Consensus        82 ~-l~~lp~~--~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~-n~l~~l~~~----~~~L~~L~L~~n~l~------  144 (454)
T 1jl5_A           82 G-LSSLPEL--PPHLESLVASCNSLTELPEL---PQSLKSLLVDN-NNLKALSDL----PPLLEYLGVSNNQLE------  144 (454)
T ss_dssp             C-CSCCCSC--CTTCSEEECCSSCCSSCCCC---CTTCCEEECCS-SCCSCCCSC----CTTCCEEECCSSCCS------
T ss_pred             c-cccCCCC--cCCCCEEEccCCcCCccccc---cCCCcEEECCC-CccCcccCC----CCCCCEEECcCCCCC------
Confidence            7 7665432  36788888888888877743   36788888887 445555531    157888888888762      


Q ss_pred             cccccccccccccCCCCccEEEeecCCCccCCCcccccCccEEEEEeCCCCCCCcchhhhhhhhcccccccceeeecccc
Q 036269          199 DDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSDMSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSRAMGLSQDM  278 (623)
Q Consensus       199 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~  278 (623)
                            .++ .++++++|+.|++++|.+..+|..  ..+|+.|+++++.....+                          
T Consensus       145 ------~lp-~~~~l~~L~~L~l~~N~l~~lp~~--~~~L~~L~L~~n~l~~l~--------------------------  189 (454)
T 1jl5_A          145 ------KLP-ELQNSSFLKIIDVDNNSLKKLPDL--PPSLEFIAAGNNQLEELP--------------------------  189 (454)
T ss_dssp             ------SCC-CCTTCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCC--------------------------
T ss_pred             ------CCc-ccCCCCCCCEEECCCCcCcccCCC--cccccEEECcCCcCCcCc--------------------------
Confidence                  234 577888888888888877666543  346777776665432211                          


Q ss_pred             ccccchHHHHHHHhhceeEeecccCCcccccccccccCccCccEEEEecccCceeecccccccccccccccceeecccCc
Q 036269          279 RISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLLKLEWLMIVDNR  358 (623)
Q Consensus       279 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~  358 (623)
                            . +.. +++|++|++++|... . ++.    ..++|+.|++++| .++.++      ....+++|+.|+++++.
T Consensus       190 ------~-~~~-l~~L~~L~l~~N~l~-~-l~~----~~~~L~~L~l~~n-~l~~lp------~~~~l~~L~~L~l~~N~  248 (454)
T 1jl5_A          190 ------E-LQN-LPFLTAIYADNNSLK-K-LPD----LPLSLESIVAGNN-ILEELP------ELQNLPFLTTIYADNNL  248 (454)
T ss_dssp             ------C-CTT-CTTCCEEECCSSCCS-S-CCC----CCTTCCEEECCSS-CCSSCC------CCTTCTTCCEEECCSSC
T ss_pred             ------c-ccC-CCCCCEEECCCCcCC-c-CCC----CcCcccEEECcCC-cCCccc------ccCCCCCCCEEECCCCc
Confidence                  0 111 156777777666532 1 111    1346777777777 444443      13346677777777664


Q ss_pred             ccccccccccCCCcCCCccEEEEeecCCcccccchhHHHhccccceEEEeccccceeeeeccceeccccccccccCccEE
Q 036269          359 NFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEIERVNIAKEETELFSSLEKL  438 (623)
Q Consensus       359 ~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L  438 (623)
                       ++.     +|. .+++|+.|++++| .+++ +|..    +++|++|++++ +.++.+         +.   ..++|++|
T Consensus       249 -l~~-----l~~-~~~~L~~L~l~~N-~l~~-l~~~----~~~L~~L~ls~-N~l~~l---------~~---~~~~L~~L  302 (454)
T 1jl5_A          249 -LKT-----LPD-LPPSLEALNVRDN-YLTD-LPEL----PQSLTFLDVSE-NIFSGL---------SE---LPPNLYYL  302 (454)
T ss_dssp             -CSS-----CCS-CCTTCCEEECCSS-CCSC-CCCC----CTTCCEEECCS-SCCSEE---------SC---CCTTCCEE
T ss_pred             -CCc-----ccc-cccccCEEECCCC-cccc-cCcc----cCcCCEEECcC-CccCcc---------cC---cCCcCCEE
Confidence             222     221 2367777777764 4444 3432    36677777777 455543         11   13567777


Q ss_pred             ecCCccchhhcccCCCcccccCCccEEEEEcCCCccee
Q 036269          439 TLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFCDELRQV  476 (623)
Q Consensus       439 ~l~~c~~l~~i~~~~~~~~~l~~L~~L~l~~C~~l~~~  476 (623)
                      ++++| .++.+..      ..++|++|++++ ++++.+
T Consensus       303 ~l~~N-~l~~i~~------~~~~L~~L~Ls~-N~l~~l  332 (454)
T 1jl5_A          303 NASSN-EIRSLCD------LPPSLEELNVSN-NKLIEL  332 (454)
T ss_dssp             ECCSS-CCSEECC------CCTTCCEEECCS-SCCSCC
T ss_pred             ECcCC-cCCcccC------CcCcCCEEECCC-Cccccc
Confidence            77766 4444311      124677777766 344443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.94  E-value=8.8e-26  Score=230.60  Aligned_cols=152  Identities=16%  Similarity=0.292  Sum_probs=111.8

Q ss_pred             CCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCc-hhhhccccCcEEeccCCcCCCCc--ccccCCc
Q 036269           55 LQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLP-SSLSFLINLRTLSLHDCQHFGDL--SLIGELS  131 (623)
Q Consensus        55 ~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~  131 (623)
                      ..+++++.|+++++.+..+|..+|..+++|++|++++|.+   ..++ ..+..+++|++|++++|. +..+  ..+++++
T Consensus        42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i---~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~  117 (390)
T 3o6n_A           42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI---EEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVP  117 (390)
T ss_dssp             GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCC---CEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCT
T ss_pred             cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcc---cccChhhccCCCCcCEEECCCCC-CCcCCHHHhcCCC
Confidence            3567888888888888888888788888899999888888   4444 467888888888888887 7665  4577888


Q ss_pred             CCcEEEcCCCCCcccccc-ccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecccccccccccccccccccccccc
Q 036269          132 LLEILDLSESDVSEIPVS-FGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIEL  210 (623)
Q Consensus       132 ~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l  210 (623)
                      +|++|++++|.++.+|.. ++++++|++|++++| .+..++...+.++++|++|++++|.+.            ..  .+
T Consensus       118 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~------------~~--~~  182 (390)
T 3o6n_A          118 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLT------------HV--DL  182 (390)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSSCCS------------BC--CG
T ss_pred             CCCEEECCCCccCcCCHHHhcCCCCCcEEECCCC-ccCccChhhccCCCCCCEEECCCCcCC------------cc--cc
Confidence            888888888888877765 477888888888884 455555545777778888887777652            11  24


Q ss_pred             cCCCCccEEEeecCC
Q 036269          211 GALSRLTSLHIDIPE  225 (623)
Q Consensus       211 ~~l~~L~~L~l~~~~  225 (623)
                      +.+++|+.|++++|.
T Consensus       183 ~~l~~L~~L~l~~n~  197 (390)
T 3o6n_A          183 SLIPSLFHANVSYNL  197 (390)
T ss_dssp             GGCTTCSEEECCSSC
T ss_pred             ccccccceeeccccc
Confidence            455666666665554

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.94  E-value=1e-25  Score=226.51  Aligned_cols=293  Identities=20%  Similarity=0.269  Sum_probs=219.8

Q ss_pred             eecCCCCCCCCCCCCCCCCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCC
Q 036269           20 IKAGVELKDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFS   99 (623)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~   99 (623)
                      ...+..+.+++.+..++++++|++++|.++.++....+++|++|++++|.+..++.  +.++++|++|++++|.+   ..
T Consensus        50 ~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~l~~n~i---~~  124 (347)
T 4fmz_A           50 VVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNEDNI---SD  124 (347)
T ss_dssp             ECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEECTTSCC---CC
T ss_pred             EEeCCccccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCchH--HcCCCcCCEEECcCCcc---cC
Confidence            33456677888888999999999999999999885599999999999999988764  79999999999999999   66


Q ss_pred             CchhhhccccCcEEeccCCcCCCCcccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccc
Q 036269          100 LPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLR  179 (623)
Q Consensus       100 lp~~~~~l~~L~~L~l~~~~~l~~i~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~  179 (623)
                      ++. +..+++|++|++++|..+..+..+..+++|++|++++|.+..++. +..+++|++|++++| .+..++.  +..++
T Consensus       125 ~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~--~~~l~  199 (347)
T 4fmz_A          125 ISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYN-QIEDISP--LASLT  199 (347)
T ss_dssp             CGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTS-CCCCCGG--GGGCT
T ss_pred             chh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCC-ccccccc--ccCCC
Confidence            666 889999999999999746777779999999999999999998775 889999999999994 5667775  78999


Q ss_pred             cCcEEEecccccccccccccccccccccccccCCCCccEEEeecCCCccCCCcccccCccEEEEEeCCCCCCCcchhhhh
Q 036269          180 KLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSDMSFQNLTSFSITIGGPEEVPLSDFIEV  259 (623)
Q Consensus       180 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  259 (623)
                      +|+.+++++|.+.            .. ..++.+++|+.|++++|.+..++....+++|+.|+++               
T Consensus       200 ~L~~L~l~~n~l~------------~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~---------------  251 (347)
T 4fmz_A          200 SLHYFTAYVNQIT------------DI-TPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIG---------------  251 (347)
T ss_dssp             TCCEEECCSSCCC------------CC-GGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECC---------------
T ss_pred             ccceeecccCCCC------------CC-chhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECC---------------
Confidence            9999999999772            11 2278899999999999987665544444555555544               


Q ss_pred             hhhcccccccceeeeccccccccchHHHHHHHhhceeEeecccCCcccccccccccCccCccEEEEecccCceeeccccc
Q 036269          260 FSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLE  339 (623)
Q Consensus       260 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~  339 (623)
                                                               +|.. ..+ +.+  ..+++|+.|++++| .++.++    
T Consensus       252 -----------------------------------------~n~l-~~~-~~~--~~l~~L~~L~l~~n-~l~~~~----  281 (347)
T 4fmz_A          252 -----------------------------------------TNQI-SDI-NAV--KDLTKLKMLNVGSN-QISDIS----  281 (347)
T ss_dssp             -----------------------------------------SSCC-CCC-GGG--TTCTTCCEEECCSS-CCCCCG----
T ss_pred             -----------------------------------------CCcc-CCC-hhH--hcCCCcCEEEccCC-ccCCCh----
Confidence                                                     3321 111 111  34566777777766 444432    


Q ss_pred             ccccccccccceeecccCcccccccccccCCCcCCCccEEEEeecCCcccccchhHHHhccccceEEEec
Q 036269          340 RTLRVTLLKLEWLMIVDNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEG  409 (623)
Q Consensus       340 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~  409 (623)
                        ....+++|+.|++++|. +.......  .+.+++|+.|++++|+ +++..|   +..+++|++|++++
T Consensus       282 --~~~~l~~L~~L~L~~n~-l~~~~~~~--l~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~  342 (347)
T 4fmz_A          282 --VLNNLSQLNSLFLNNNQ-LGNEDMEV--IGGLTNLTTLFLSQNH-ITDIRP---LASLSKMDSADFAN  342 (347)
T ss_dssp             --GGGGCTTCSEEECCSSC-CCGGGHHH--HHTCTTCSEEECCSSS-CCCCGG---GGGCTTCSEESSSC
T ss_pred             --hhcCCCCCCEEECcCCc-CCCcChhH--hhccccCCEEEccCCc-cccccC---hhhhhccceeehhh
Confidence              34456777777777775 32221111  2356788888888854 555333   45778888888887

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.94  E-value=2.9e-25  Score=233.30  Aligned_cols=191  Identities=24%  Similarity=0.267  Sum_probs=110.8

Q ss_pred             cEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCC
Q 036269           39 TGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDC  118 (623)
Q Consensus        39 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~  118 (623)
                      +.++.+++.++.+|.... ++++.|++++|.+..+++..|.++++|++|++++|.+.  +..|..+.++++|++|++++|
T Consensus        14 ~~v~c~~~~l~~ip~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~--~~~~~~~~~l~~L~~L~L~~n   90 (477)
T 2id5_A           14 RAVLCHRKRFVAVPEGIP-TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS--AVEPGAFNNLFNLRTLGLRSN   90 (477)
T ss_dssp             TEEECCSCCCSSCCSCCC-TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC--EECTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCcCCCCCC-CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccC--EeChhhhhCCccCCEEECCCC
Confidence            445555566666665442 45666777777666555444566777777777776663  333556666677777777766


Q ss_pred             cCCCCc--ccccCCcCCcEEEcCCCCCccc-cccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccccccccc
Q 036269          119 QHFGDL--SLIGELSLLEILDLSESDVSEI-PVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQF  195 (623)
Q Consensus       119 ~~l~~i--~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~  195 (623)
                      . +..+  ..+.++++|++|++++|.+..+ |..+.++++|++|++++ +.+..++...+.++++|++|++++|.+.   
T Consensus        91 ~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~---  165 (477)
T 2id5_A           91 R-LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGD-NDLVYISHRAFSGLNSLEQLTLEKCNLT---  165 (477)
T ss_dssp             C-CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECC-TTCCEECTTSSTTCTTCCEEEEESCCCS---
T ss_pred             c-CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCC-CccceeChhhccCCCCCCEEECCCCcCc---
Confidence            6 6555  3456666777777777666643 44566666777777766 3344444333666666666666666552   


Q ss_pred             ccccccccccccccccCCCCccEEEeecCCCccCCCc--ccccCccEEEEEe
Q 036269          196 ENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSD--MSFQNLTSFSITI  245 (623)
Q Consensus       196 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~  245 (623)
                              ......++.+++|+.|++++|.+..++..  ..+++|+.|+++.
T Consensus       166 --------~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~  209 (477)
T 2id5_A          166 --------SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH  209 (477)
T ss_dssp             --------SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEEC
T ss_pred             --------ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCC
Confidence                    12223355666666666666655444332  3344444444443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.93  E-value=9.2e-25  Score=223.03  Aligned_cols=303  Identities=18%  Similarity=0.220  Sum_probs=216.5

Q ss_pred             CCCCCcEEEcccCCcccccccC--CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCc
Q 036269           34 TFEDLTGISLMFNDIHEVHEGL--QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLR  111 (623)
Q Consensus        34 ~~~~l~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~  111 (623)
                      .+.+++.++++++.++.+|...  .+++|++|++++|.+..++...|.++++|++|++++|.+.  ...|..+..+++|+
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~  120 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR--YLPPHVFQNVPLLT  120 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCC
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC--cCCHHHhcCCCCCC
Confidence            4688999999999999999864  7999999999999999777766899999999999999994  34455689999999


Q ss_pred             EEeccCCcCCCCc--ccccCCcCCcEEEcCCCCCcccc-ccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecc
Q 036269          112 TLSLHDCQHFGDL--SLIGELSLLEILDLSESDVSEIP-VSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSK  188 (623)
Q Consensus       112 ~L~l~~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~  188 (623)
                      +|++++|. +..+  ..++++++|++|++++|.++.++ ..+.++++|++|++++ +.++.++   +..+++|+.|++++
T Consensus       121 ~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~---~~~l~~L~~L~l~~  195 (390)
T 3o6n_A          121 VLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS-NRLTHVD---LSLIPSLFHANVSY  195 (390)
T ss_dssp             EEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCS-SCCSBCC---GGGCTTCSEEECCS
T ss_pred             EEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCC-CcCCccc---cccccccceeeccc
Confidence            99999998 8877  34689999999999999999764 5689999999999999 5566665   67789999999999


Q ss_pred             cccccccccccccccccccccccCCCCccEEEeecCCCccCCCcccccCccEEEEEeCCCCCCCcchhhhhhhhcccccc
Q 036269          189 TFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSDMSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRC  268 (623)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~  268 (623)
                      |.+.                .+...++|+.|++++|.+..++.. ..+                                
T Consensus       196 n~l~----------------~~~~~~~L~~L~l~~n~l~~~~~~-~~~--------------------------------  226 (390)
T 3o6n_A          196 NLLS----------------TLAIPIAVEELDASHNSINVVRGP-VNV--------------------------------  226 (390)
T ss_dssp             SCCS----------------EEECCSSCSEEECCSSCCCEEECC-CCS--------------------------------
T ss_pred             cccc----------------ccCCCCcceEEECCCCeeeecccc-ccc--------------------------------
Confidence            8762                233456788999888876544322 123                                


Q ss_pred             cceeeeccccccccchHHHHHHHhhceeEeecccCCcccccccccccCccCccEEEEecccCceeecccccccccccccc
Q 036269          269 SRAMGLSQDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLLK  348 (623)
Q Consensus       269 l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~  348 (623)
                                              +|+.|++++|....  .+.+  ..+++|++|+++++ .++.+...    ....+++
T Consensus       227 ------------------------~L~~L~l~~n~l~~--~~~l--~~l~~L~~L~Ls~n-~l~~~~~~----~~~~l~~  273 (390)
T 3o6n_A          227 ------------------------ELTILKLQHNNLTD--TAWL--LNYPGLVEVDLSYN-ELEKIMYH----PFVKMQR  273 (390)
T ss_dssp             ------------------------SCCEEECCSSCCCC--CGGG--GGCTTCSEEECCSS-CCCEEESG----GGTTCSS
T ss_pred             ------------------------cccEEECCCCCCcc--cHHH--cCCCCccEEECCCC-cCCCcChh----Hcccccc
Confidence                                    34444444443211  1111  34567777777776 44443222    3445667


Q ss_pred             cceeecccCcccccccccccCCCcCCCccEEEEeecCCcccccchhHHHhccccceEEEeccccceeeeeccceeccccc
Q 036269          349 LEWLMIVDNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEIERVNIAKEE  428 (623)
Q Consensus       349 L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~  428 (623)
                      |+.|+++++. ++.+..   ....+++|+.|++++| .++. +|.. +..+++|++|++++ +.++++         +  
T Consensus       274 L~~L~L~~n~-l~~~~~---~~~~l~~L~~L~L~~n-~l~~-~~~~-~~~l~~L~~L~L~~-N~i~~~---------~--  334 (390)
T 3o6n_A          274 LERLYISNNR-LVALNL---YGQPIPTLKVLDLSHN-HLLH-VERN-QPQFDRLENLYLDH-NSIVTL---------K--  334 (390)
T ss_dssp             CCEEECCSSC-CCEEEC---SSSCCTTCCEEECCSS-CCCC-CGGG-HHHHTTCSEEECCS-SCCCCC---------C--
T ss_pred             CCEEECCCCc-CcccCc---ccCCCCCCCEEECCCC-ccee-cCcc-ccccCcCCEEECCC-Ccccee---------C--
Confidence            7777777665 333211   1135677777777775 4554 4544 56777888888887 556554         2  


Q ss_pred             cccccCccEEecCCcc
Q 036269          429 TELFSSLEKLTLIGLP  444 (623)
Q Consensus       429 ~~~~~~L~~L~l~~c~  444 (623)
                      ...+++|++|++++++
T Consensus       335 ~~~~~~L~~L~l~~N~  350 (390)
T 3o6n_A          335 LSTHHTLKNLTLSHND  350 (390)
T ss_dssp             CCTTCCCSEEECCSSC
T ss_pred             chhhccCCEEEcCCCC
Confidence            3456777777777764

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=6.6e-25  Score=236.44  Aligned_cols=153  Identities=16%  Similarity=0.248  Sum_probs=118.1

Q ss_pred             CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCCcCCCCc--ccccCCcCC
Q 036269           56 QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDL--SLIGELSLL  133 (623)
Q Consensus        56 ~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~L  133 (623)
                      .+.+++.+++++|.+..+|..+|..+++|++|++++|.+.  +..|..+..+++|++|++++|. +..+  ..++++++|
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L  125 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE--EIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLL  125 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCC--EECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTC
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC--CCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCC
Confidence            5678899999999888888888888999999999999884  3334578888999999999988 7666  457888899


Q ss_pred             cEEEcCCCCCcccccc-ccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecccccccccccccccccccccccccC
Q 036269          134 EILDLSESDVSEIPVS-FGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGA  212 (623)
Q Consensus       134 ~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~  212 (623)
                      ++|++++|.++.+|.. ++++++|++|++++| .+..+++..+.++++|++|++++|.+.            ..  .++.
T Consensus       126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~------------~~--~~~~  190 (597)
T 3oja_B          126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLT------------HV--DLSL  190 (597)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTSCCS------------BC--CGGG
T ss_pred             CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCCCCC------------Cc--Chhh
Confidence            9999999988888765 478888999998884 455565555788888888888888762            11  2455


Q ss_pred             CCCccEEEeecCCC
Q 036269          213 LSRLTSLHIDIPEG  226 (623)
Q Consensus       213 l~~L~~L~l~~~~~  226 (623)
                      +++|+.|++++|.+
T Consensus       191 l~~L~~L~l~~n~l  204 (597)
T 3oja_B          191 IPSLFHANVSYNLL  204 (597)
T ss_dssp             CTTCSEEECCSSCC
T ss_pred             hhhhhhhhcccCcc
Confidence            66777777766543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.93  E-value=3.1e-24  Score=222.37  Aligned_cols=198  Identities=17%  Similarity=0.135  Sum_probs=167.3

Q ss_pred             eecCCCCCCCCCCCCCCCCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCC
Q 036269           20 IKAGVELKDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFS   99 (623)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~   99 (623)
                      ...++.+..+|.+..++++++|++++|.++.++ ...+++|++|++++|.+..++   +.++++|++|++++|.+   ..
T Consensus        48 ~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~~N~l---~~  120 (457)
T 3bz5_A           48 DCHNSSITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKL---TK  120 (457)
T ss_dssp             ECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECCSSCC---SC
T ss_pred             EccCCCcccChhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee---cCCCCcCCEEECCCCcC---Ce
Confidence            334566777888889999999999999999886 448999999999999999875   68999999999999999   55


Q ss_pred             CchhhhccccCcEEeccCCcCCCCcccccCCcCCcEEEcCCC-CCccccccccCCCccCEEeccCCCCCCcCchhhhhcc
Q 036269          100 LPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSES-DVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRL  178 (623)
Q Consensus       100 lp~~~~~l~~L~~L~l~~~~~l~~i~~~~~l~~L~~L~l~~~-~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l  178 (623)
                      +|  +..+++|++|++++|. ++.+ .++.+++|++|++++| .+..+  .++.+++|++|++++ +.++.+|   +..+
T Consensus       121 l~--~~~l~~L~~L~l~~N~-l~~l-~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~-n~l~~l~---l~~l  190 (457)
T 3bz5_A          121 LD--VSQNPLLTYLNCARNT-LTEI-DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSF-NKITELD---VSQN  190 (457)
T ss_dssp             CC--CTTCTTCCEEECTTSC-CSCC-CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCS-SCCCCCC---CTTC
T ss_pred             ec--CCCCCcCCEEECCCCc-ccee-ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCC-Cccceec---cccC
Confidence            65  7899999999999998 8776 4889999999999999 45555  488999999999999 5666777   7889


Q ss_pred             ccCcEEEecccccccccccccccccccccccccCCCCccEEEeecCCCccCCCcccccCccEEEEEeCCCC
Q 036269          179 RKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSDMSFQNLTSFSITIGGPE  249 (623)
Q Consensus       179 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~  249 (623)
                      ++|+.|++++|.+.            ..  .++.+++|+.|++++|.+..+| ...+++|+.|+++++...
T Consensus       191 ~~L~~L~l~~N~l~------------~~--~l~~l~~L~~L~Ls~N~l~~ip-~~~l~~L~~L~l~~N~l~  246 (457)
T 3bz5_A          191 KLLNRLNCDTNNIT------------KL--DLNQNIQLTFLDCSSNKLTEID-VTPLTQLTYFDCSVNPLT  246 (457)
T ss_dssp             TTCCEEECCSSCCS------------CC--CCTTCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCS
T ss_pred             CCCCEEECcCCcCC------------ee--ccccCCCCCEEECcCCcccccC-ccccCCCCEEEeeCCcCC
Confidence            99999999999873            12  4788999999999999988776 556778888888776543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.93  E-value=4.5e-24  Score=224.16  Aligned_cols=306  Identities=22%  Similarity=0.211  Sum_probs=215.1

Q ss_pred             eecCCCCCCCCCCCCCCCCcEEEcccCCcccccc-cC-CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCccccc
Q 036269           20 IKAGVELKDWPSINTFEDLTGISLMFNDIHEVHE-GL-QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSL   97 (623)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~   97 (623)
                      ...+..+..+|. ...+.++.|++++|.++.+++ .+ .+++|+.|++++|.+..+++..|.++++|++|++++|.+   
T Consensus        17 ~c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l---   92 (477)
T 2id5_A           17 LCHRKRFVAVPE-GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL---   92 (477)
T ss_dssp             ECCSCCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC---
T ss_pred             EeCCCCcCcCCC-CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC---
Confidence            334566777874 455789999999999998865 34 899999999999999977555679999999999999999   


Q ss_pred             CCCch-hhhccccCcEEeccCCcCCCCc--ccccCCcCCcEEEcCCCCCccc-cccccCCCccCEEeccCCCCCCcCchh
Q 036269           98 FSLPS-SLSFLINLRTLSLHDCQHFGDL--SLIGELSLLEILDLSESDVSEI-PVSFGRLGHLRLLDLTDCYNLELIPRG  173 (623)
Q Consensus        98 ~~lp~-~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~~~~l~~~  173 (623)
                      ..+|. .+.++++|++|++++|. +..+  ..+..+++|++|++++|.+..+ |..+..+++|++|++++ +.++.++..
T Consensus        93 ~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~  170 (477)
T 2id5_A           93 KLIPLGVFTGLSNLTKLDISENK-IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEK-CNLTSIPTE  170 (477)
T ss_dssp             CSCCTTSSTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEES-CCCSSCCHH
T ss_pred             CccCcccccCCCCCCEEECCCCc-cccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCC-CcCcccChh
Confidence            66665 47899999999999998 8665  5789999999999999999865 56899999999999999 467778877


Q ss_pred             hhhccccCcEEEecccccccccccccccccccccccccCCCCccEEEeecCC-CccCCCc-ccccCccEEEEEeCCCCCC
Q 036269          174 VLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPE-GEIMPSD-MSFQNLTSFSITIGGPEEV  251 (623)
Q Consensus       174 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~-~~~~~L~~L~l~~~~~~~~  251 (623)
                      .+..+++|+.|++++|.+.           ......+..+++|+.|++++|. ...++.. ....+|+.|+++++...  
T Consensus       171 ~l~~l~~L~~L~l~~n~i~-----------~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--  237 (477)
T 2id5_A          171 ALSHLHGLIVLRLRHLNIN-----------AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT--  237 (477)
T ss_dssp             HHTTCTTCCEEEEESCCCC-----------EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC--
T ss_pred             HhcccCCCcEEeCCCCcCc-----------EeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc--
Confidence            7899999999999999873           3334568889999999999976 4445444 44457888887766433  


Q ss_pred             CcchhhhhhhhcccccccceeeeccccccccchHHHHHHHhhceeEeecccCCcccccccccccCccCccEEEEecccCc
Q 036269          252 PLSDFIEVFSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEM  331 (623)
Q Consensus       252 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l  331 (623)
                                                    .+|......+++|+.|++++|.. ..+.+. .+..+++|+.|+++++ .+
T Consensus       238 ------------------------------~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~-~~~~l~~L~~L~L~~n-~l  284 (477)
T 2id5_A          238 ------------------------------AVPYLAVRHLVYLRFLNLSYNPI-STIEGS-MLHELLRLQEIQLVGG-QL  284 (477)
T ss_dssp             ------------------------------SCCHHHHTTCTTCCEEECCSSCC-CEECTT-SCTTCTTCCEEECCSS-CC
T ss_pred             ------------------------------ccCHHHhcCccccCeeECCCCcC-CccChh-hccccccCCEEECCCC-cc
Confidence                                          22222222225667777766652 222111 1245566666666666 34


Q ss_pred             eeecccccccccccccccceeecccCcccccccccccCCCcCCCccEEEEeec
Q 036269          332 KYLLNSLERTLRVTLLKLEWLMIVDNRNFVEICHGQLPAGCLSNVKRLDVRDC  384 (623)
Q Consensus       332 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c  384 (623)
                      ..+...    ....+++|+.|+++++. ++.+....  ...+++|+.|+++++
T Consensus       285 ~~~~~~----~~~~l~~L~~L~L~~N~-l~~~~~~~--~~~l~~L~~L~l~~N  330 (477)
T 2id5_A          285 AVVEPY----AFRGLNYLRVLNVSGNQ-LTTLEESV--FHSVGNLETLILDSN  330 (477)
T ss_dssp             SEECTT----TBTTCTTCCEEECCSSC-CSCCCGGG--BSCGGGCCEEECCSS
T ss_pred             ceECHH----HhcCcccCCEEECCCCc-CceeCHhH--cCCCcccCEEEccCC
Confidence            433221    23345556666665553 22221111  123455555555553

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=8.4e-24  Score=227.83  Aligned_cols=303  Identities=19%  Similarity=0.229  Sum_probs=222.0

Q ss_pred             CCCCCcEEEcccCCcccccccC--CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCc
Q 036269           34 TFEDLTGISLMFNDIHEVHEGL--QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLR  111 (623)
Q Consensus        34 ~~~~l~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~  111 (623)
                      .+..++.++++++.++.+|+..  .+++|++|++++|.+..+++..|..+++|++|++++|.+.  +..|..+..+++|+
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~  126 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR--YLPPHVFQNVPLLT  126 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCC
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC--CCCHHHHcCCCCCC
Confidence            3578899999999999999865  7999999999999999777666799999999999999994  34445679999999


Q ss_pred             EEeccCCcCCCCc--ccccCCcCCcEEEcCCCCCcccc-ccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecc
Q 036269          112 TLSLHDCQHFGDL--SLIGELSLLEILDLSESDVSEIP-VSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSK  188 (623)
Q Consensus       112 ~L~l~~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~  188 (623)
                      +|++++|. +..+  ..++++++|++|++++|.+..++ ..++++++|++|++++ +.+..++   +..+++|+.|++++
T Consensus       127 ~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~---~~~l~~L~~L~l~~  201 (597)
T 3oja_B          127 VLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS-NRLTHVD---LSLIPSLFHANVSY  201 (597)
T ss_dssp             EEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTT-SCCSBCC---GGGCTTCSEEECCS
T ss_pred             EEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcC-CCCCCcC---hhhhhhhhhhhccc
Confidence            99999998 8777  34789999999999999999665 5799999999999999 4566665   57789999999999


Q ss_pred             cccccccccccccccccccccccCCCCccEEEeecCCCccCCCcccccCccEEEEEeCCCCCCCcchhhhhhhhcccccc
Q 036269          189 TFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSDMSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRC  268 (623)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~  268 (623)
                      |.+.                .+....+|+.|++++|.+..++... .+                                
T Consensus       202 n~l~----------------~l~~~~~L~~L~ls~n~l~~~~~~~-~~--------------------------------  232 (597)
T 3oja_B          202 NLLS----------------TLAIPIAVEELDASHNSINVVRGPV-NV--------------------------------  232 (597)
T ss_dssp             SCCS----------------EEECCTTCSEEECCSSCCCEEECSC-CS--------------------------------
T ss_pred             Cccc----------------cccCCchhheeeccCCccccccccc-CC--------------------------------
Confidence            8762                2345567899999888765443321 12                                


Q ss_pred             cceeeeccccccccchHHHHHHHhhceeEeecccCCcccccccccccCccCccEEEEecccCceeecccccccccccccc
Q 036269          269 SRAMGLSQDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLLK  348 (623)
Q Consensus       269 l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~  348 (623)
                                              +|+.|++++|....  ++.+  ..+++|+.|++++| .+..+...    ....+++
T Consensus       233 ------------------------~L~~L~L~~n~l~~--~~~l--~~l~~L~~L~Ls~N-~l~~~~~~----~~~~l~~  279 (597)
T 3oja_B          233 ------------------------ELTILKLQHNNLTD--TAWL--LNYPGLVEVDLSYN-ELEKIMYH----PFVKMQR  279 (597)
T ss_dssp             ------------------------CCCEEECCSSCCCC--CGGG--GGCTTCSEEECCSS-CCCEEESG----GGTTCSS
T ss_pred             ------------------------CCCEEECCCCCCCC--Chhh--ccCCCCCEEECCCC-ccCCCCHH----HhcCccC
Confidence                                    34444444443211  1112  44667777777777 44443222    3455677


Q ss_pred             cceeecccCcccccccccccCCCcCCCccEEEEeecCCcccccchhHHHhccccceEEEeccccceeeeeccceeccccc
Q 036269          349 LEWLMIVDNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEIERVNIAKEE  428 (623)
Q Consensus       349 L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~  428 (623)
                      |+.|+++++. ++.+.   ...+.+++|+.|++++| .++. +|.. +..+++|+.|++++ +.++.+         +  
T Consensus       280 L~~L~Ls~N~-l~~l~---~~~~~l~~L~~L~Ls~N-~l~~-i~~~-~~~l~~L~~L~L~~-N~l~~~---------~--  340 (597)
T 3oja_B          280 LERLYISNNR-LVALN---LYGQPIPTLKVLDLSHN-HLLH-VERN-QPQFDRLENLYLDH-NSIVTL---------K--  340 (597)
T ss_dssp             CCEEECTTSC-CCEEE---CSSSCCTTCCEEECCSS-CCCC-CGGG-HHHHTTCSEEECCS-SCCCCC---------C--
T ss_pred             CCEEECCCCC-CCCCC---cccccCCCCcEEECCCC-CCCc-cCcc-cccCCCCCEEECCC-CCCCCc---------C--
Confidence            7777777765 33321   11235788888888885 4554 5655 67888888888888 556554         2  


Q ss_pred             cccccCccEEecCCcc
Q 036269          429 TELFSSLEKLTLIGLP  444 (623)
Q Consensus       429 ~~~~~~L~~L~l~~c~  444 (623)
                      ...+++|+.|++++|+
T Consensus       341 ~~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          341 LSTHHTLKNLTLSHND  356 (597)
T ss_dssp             CCTTCCCSEEECCSSC
T ss_pred             hhhcCCCCEEEeeCCC
Confidence            4567888888888875

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.91  E-value=2.1e-25  Score=241.34  Aligned_cols=410  Identities=16%  Similarity=0.062  Sum_probs=235.8

Q ss_pred             CCCCcceEEccCCCCC----CCC-----------hhhHhCCCcccEEEccCCcccccCCCchhhhc-ccc-CcEEeccCC
Q 036269           56 QCPRLQALFLQKNDLL----DIP-----------DPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSF-LIN-LRTLSLHDC  118 (623)
Q Consensus        56 ~~~~L~~L~l~~~~~~----~l~-----------~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~-l~~-L~~L~l~~~  118 (623)
                      ++++|+.|+++++...    .+|           ..++..+++|++|+++++.+.  +..+..+.. +++ |++|++++|
T Consensus        71 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~--~~~~~~l~~~~~~~L~~L~L~~~  148 (592)
T 3ogk_B           71 RFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVS--DLDLDRLAKARADDLETLKLDKC  148 (592)
T ss_dssp             HCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCC--HHHHHHHHHHHGGGCCEEEEESC
T ss_pred             hCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEec--HHHHHHHHHhccccCcEEECcCC
Confidence            5667777777664321    111           122336788888888888764  344444544 344 888888877


Q ss_pred             cCCCC--c-ccccCCcCCcEEEcCCCCCcc-----ccccccCCCccCEEeccCCCCC----CcCchhhhhccccCcEEEe
Q 036269          119 QHFGD--L-SLIGELSLLEILDLSESDVSE-----IPVSFGRLGHLRLLDLTDCYNL----ELIPRGVLSRLRKLEELYM  186 (623)
Q Consensus       119 ~~l~~--i-~~~~~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~L~l~~~~~~----~~l~~~~~~~l~~L~~L~l  186 (623)
                      ..+..  + ....++++|++|++++|.+..     ++.....+++|++|+++++...    ..++. ++.++++|+.|++
T Consensus       149 ~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~-~~~~~~~L~~L~L  227 (592)
T 3ogk_B          149 SGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLET-IARNCRSLVSVKV  227 (592)
T ss_dssp             EEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHH-HHHHCTTCCEEEC
T ss_pred             CCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHH-HHhhCCCCcEEec
Confidence            63321  2 233467888888888886542     3334456778888888774332    12222 3566788888888


Q ss_pred             cccccccccccccccccccccccccCCCCccEEEeecCCCc----cCCCc-ccccCccEEEEEeCCCCCCCcchhhhhhh
Q 036269          187 SKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGE----IMPSD-MSFQNLTSFSITIGGPEEVPLSDFIEVFS  261 (623)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~----~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  261 (623)
                      ++|.+            ...+..++.+++|+.|+++.....    ..... ..+++|+.+.++.....            
T Consensus       228 ~~~~~------------~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~------------  283 (592)
T 3ogk_B          228 GDFEI------------LELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN------------  283 (592)
T ss_dssp             SSCBG------------GGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT------------
T ss_pred             cCccH------------HHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh------------
Confidence            87765            234556677788888888753211    11111 45556666655432111            


Q ss_pred             hcccccccceeeeccccccccchHHHHHHHhhceeEeecccCCcccccccccccCccCccEEEEecccCceeeccccccc
Q 036269          262 RKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERT  341 (623)
Q Consensus       262 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~  341 (623)
                                          .+|..+.. +++|++|++++|. +...........+++|++|++.++  +..   .....
T Consensus       284 --------------------~l~~~~~~-~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~--~~~---~~l~~  336 (592)
T 3ogk_B          284 --------------------EMPILFPF-AAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNV--IGD---RGLEV  336 (592)
T ss_dssp             --------------------TGGGGGGG-GGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGG--GHH---HHHHH
T ss_pred             --------------------HHHHHHhh-cCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCc--cCH---HHHHH
Confidence                                22222222 2788888888877 332211111256788888888844  211   10001


Q ss_pred             ccccccccceeeccc----------CcccccccccccCCCcCCCccEEEEeecCCcccccchhHHHhccccceEEEec--
Q 036269          342 LRVTLLKLEWLMIVD----------NRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEG--  409 (623)
Q Consensus       342 ~~~~~~~L~~L~l~~----------~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~--  409 (623)
                      ....+++|++|++.+          |..++......+ ...+++|+.|++ +|+.+++..+......+++|+.|++++  
T Consensus       337 ~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l-~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~  414 (592)
T 3ogk_B          337 LAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIAL-AQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLD  414 (592)
T ss_dssp             HHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHH-HHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECS
T ss_pred             HHHhCCCCCEEEeecCccccccccccCccCHHHHHHH-HhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecC
Confidence            334577888888884          554433211111 124788888888 457777655555444588888888873  


Q ss_pred             -cccceeeeeccceeccccccccccCccEEecCCccc-hhhcccCCCcccccCCccEEEEEcCCCcceeccCcccCcccc
Q 036269          410 -CELLVSVFEIERVNIAKEETELFSSLEKLTLIGLPR-MTDIWKGDTQFVSLHDLKKIRVVFCDELRQVFPANLGKKAAA  487 (623)
Q Consensus       410 -c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~-l~~i~~~~~~~~~l~~L~~L~l~~C~~l~~~~~~~l~~~~~L  487 (623)
                       |+.+++....+|.   +..+..+++|+.|+++.|.. +++.. .......+++|++|++++|. ++...          
T Consensus       415 ~~n~l~~~p~~~~~---~~~~~~~~~L~~L~L~~~~~~l~~~~-~~~~~~~~~~L~~L~L~~n~-l~~~~----------  479 (592)
T 3ogk_B          415 REERITDLPLDNGV---RSLLIGCKKLRRFAFYLRQGGLTDLG-LSYIGQYSPNVRWMLLGYVG-ESDEG----------  479 (592)
T ss_dssp             CCSCCSSCCCHHHH---HHHHHHCTTCCEEEEECCGGGCCHHH-HHHHHHSCTTCCEEEECSCC-SSHHH----------
T ss_pred             CCccccCchHHHHH---HHHHHhCCCCCEEEEecCCCCccHHH-HHHHHHhCccceEeeccCCC-CCHHH----------
Confidence             5666654222222   33345688888888876653 22210 01112336788888888763 33210          


Q ss_pred             hhhhhhcccccccceeccccCCCCCCCCCCccEEEEecCCCcceecchhhhhccCCCCEEEEccCCchhhh
Q 036269          488 EEMVLYRNRRDQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSRCPTLQEI  558 (623)
Q Consensus       488 ~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~l  558 (623)
                                          .+..+..+++|++|+|++|+ +++.........+++|+.|++++|. ++..
T Consensus       480 --------------------~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~  528 (592)
T 3ogk_B          480 --------------------LMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMT  528 (592)
T ss_dssp             --------------------HHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTT
T ss_pred             --------------------HHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCHH
Confidence                                00112366889999999987 6553333445678899999999998 5543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.90  E-value=5.2e-25  Score=238.37  Aligned_cols=406  Identities=17%  Similarity=0.139  Sum_probs=234.0

Q ss_pred             CCCCcceEEccCCCCC-CC---C-----------hhhHhCCCcccEEEccCCcccccCCCchhhh-ccccCcEEeccCCc
Q 036269           56 QCPRLQALFLQKNDLL-DI---P-----------DPFFQGMKDLKVLDLGGSGVFSLFSLPSSLS-FLINLRTLSLHDCQ  119 (623)
Q Consensus        56 ~~~~L~~L~l~~~~~~-~l---~-----------~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~-~l~~L~~L~l~~~~  119 (623)
                      ++++|+.|+++++... ++   |           ..++..+++|++|+++++.++  +..+..+. .+++|++|++++|.
T Consensus        64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~--~~~~~~l~~~~~~L~~L~L~~~~  141 (594)
T 2p1m_B           64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVT--DDCLELIAKSFKNFKVLVLSSCE  141 (594)
T ss_dssp             HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCC--HHHHHHHHHHCTTCCEEEEESCE
T ss_pred             hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEc--HHHHHHHHHhCCCCcEEeCCCcC
Confidence            5667777777776532 11   1           223456778888888887764  34444444 67788888888874


Q ss_pred             CCCC--c-ccccCCcCCcEEEcCCCCCcc-----ccccccCCCccCEEeccCCCCCCcCch----hhhhccccCcEEEec
Q 036269          120 HFGD--L-SLIGELSLLEILDLSESDVSE-----IPVSFGRLGHLRLLDLTDCYNLELIPR----GVLSRLRKLEELYMS  187 (623)
Q Consensus       120 ~l~~--i-~~~~~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~L~l~~~~~~~~l~~----~~~~~l~~L~~L~l~  187 (623)
                      .+++  + ....++++|++|++++|.++.     ++.....+++|+.|++++|.  ..+..    .++.++++|++|+++
T Consensus       142 ~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~  219 (594)
T 2p1m_B          142 GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLN  219 (594)
T ss_dssp             EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECC
T ss_pred             CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecC
Confidence            3543  3 334467888888888876552     33333467788888888754  22221    223456788888887


Q ss_pred             ccccccccccccccccccccccccCCCCccEEEeecCCC-------ccCCCc-ccccCccEEEEEeCCCCCCCcchhhhh
Q 036269          188 KTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEG-------EIMPSD-MSFQNLTSFSITIGGPEEVPLSDFIEV  259 (623)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-------~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~  259 (623)
                      +|...           ...+..++.+++|+.|++..+..       ..++.. ..+++|+.+.                 
T Consensus       220 ~~~~~-----------~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls-----------------  271 (594)
T 2p1m_B          220 RAVPL-----------EKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLS-----------------  271 (594)
T ss_dssp             TTSCH-----------HHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEE-----------------
T ss_pred             CCCcH-----------HHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCccccc-----------------
Confidence            76321           22445566777788877654431       111111 3344444441                 


Q ss_pred             hhhcccccccceeeeccccccccchHHHHHHHhhceeEeecccCCcccccccccccCccCccEEEEecccCceeeccccc
Q 036269          260 FSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLE  339 (623)
Q Consensus       260 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~  339 (623)
                                   .+.... ...++..+.. +++|++|++++|. +.+.........+++|++|++.+|  +..   ...
T Consensus       272 -------------~~~~~~-~~~l~~~~~~-~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~--~~~---~~l  330 (594)
T 2p1m_B          272 -------------GFWDAV-PAYLPAVYSV-CSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY--IED---AGL  330 (594)
T ss_dssp             -------------CCBTCC-GGGGGGGHHH-HTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG--GHH---HHH
T ss_pred             -------------CCcccc-hhhHHHHHHh-hCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc--cCH---HHH
Confidence                         000000 0133333333 3899999999888 443211111246789999999988  221   100


Q ss_pred             ccccccccccceeecccC--------cccccccccccCCCcCCCccEEEEeecCCcccccchhHHHhccccceEEEe---
Q 036269          340 RTLRVTLLKLEWLMIVDN--------RNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVE---  408 (623)
Q Consensus       340 ~~~~~~~~~L~~L~l~~~--------~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~---  408 (623)
                      ......+++|++|++.++        ..+++.....+ ...+++|+.|.+ +|+.+++..+......+++|+.|+++   
T Consensus       331 ~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l-~~~~~~L~~L~~-~~~~l~~~~~~~l~~~~~~L~~L~L~~~~  408 (594)
T 2p1m_B          331 EVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV-SMGCPKLESVLY-FCRQMTNAALITIARNRPNMTRFRLCIIE  408 (594)
T ss_dssp             HHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHH-HHHCTTCCEEEE-EESCCCHHHHHHHHHHCTTCCEEEEEESS
T ss_pred             HHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHH-HHhchhHHHHHH-hcCCcCHHHHHHHHhhCCCcceeEeeccc
Confidence            002335788999998543        22322111111 124789999955 45777765555545578999999999   


Q ss_pred             --ccccceeeeeccceeccccccccccCccEEecCCccchhhcccCCCcccccCCccEEEEEcCCCcceeccCcccCccc
Q 036269          409 --GCELLVSVFEIERVNIAKEETELFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFCDELRQVFPANLGKKAA  486 (623)
Q Consensus       409 --~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~L~~L~l~~C~~l~~~~~~~l~~~~~  486 (623)
                        +|+.+++.....|+   +..+..+++|++|++++  .+++... ......+++|++|++++|. ++...+..+     
T Consensus       409 ~~~~~~l~~~~~~~~~---~~l~~~~~~L~~L~L~~--~l~~~~~-~~l~~~~~~L~~L~L~~~~-i~~~~~~~l-----  476 (594)
T 2p1m_B          409 PKAPDYLTLEPLDIGF---GAIVEHCKDLRRLSLSG--LLTDKVF-EYIGTYAKKMEMLSVAFAG-DSDLGMHHV-----  476 (594)
T ss_dssp             TTCCCTTTCCCTHHHH---HHHHHHCTTCCEEECCS--SCCHHHH-HHHHHHCTTCCEEEEESCC-SSHHHHHHH-----
T ss_pred             CCCcccccCCchhhHH---HHHHhhCCCccEEeecC--cccHHHH-HHHHHhchhccEeeccCCC-CcHHHHHHH-----
Confidence              67888754322222   23346788999999976  3443100 1111237889999999874 432211111     


Q ss_pred             chhhhhhcccccccceeccccCCCCCCCCCCccEEEEecCCCcceecchhhhhccCCCCEEEEccCCc
Q 036269          487 AEEMVLYRNRRDQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSRCPT  554 (623)
Q Consensus       487 L~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~  554 (623)
                                               ...+++|+.|++++|+. ++.........+++|++|++++|+.
T Consensus       477 -------------------------~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          477 -------------------------LSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             -------------------------HHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             -------------------------HhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence                                     02467788888888764 4433333455678888888888873

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.89  E-value=2e-22  Score=200.86  Aligned_cols=167  Identities=22%  Similarity=0.298  Sum_probs=86.2

Q ss_pred             CcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCC-chhhhccccCcEEeccCCcCCCCc--ccccCCcCCcE
Q 036269           59 RLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSL-PSSLSFLINLRTLSLHDCQHFGDL--SLIGELSLLEI  135 (623)
Q Consensus        59 ~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~L~~  135 (623)
                      +++.++++++.+..+|..+   .++|++|++++|.+   ..+ |..+.++++|++|++++|. +..+  ..++++++|++
T Consensus        34 ~l~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n~i---~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~  106 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEI---SPDTTLLDLQNNDI---SELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQK  106 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCC---CTTCCEEECCSSCC---CEECTTTTTTCTTCCEEECCSSC-CCEECGGGSTTCTTCCE
T ss_pred             cCCEEECCCCCccccCCCC---CCCCeEEECCCCcC---CccCHhHhhCCCCCcEEECCCCc-cCccCHhHhhCcCCCCE
Confidence            4555555555555555432   24555666666555   333 3345555666666666555 5443  34555566666


Q ss_pred             EEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecccccccccccccccccccccccccCCCC
Q 036269          136 LDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSR  215 (623)
Q Consensus       136 L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~  215 (623)
                      |++++|.++.+|..+.  ++|++|++++ +.++.++...+.++++|++|++++|.+...         ...+..++.+ +
T Consensus       107 L~L~~n~l~~l~~~~~--~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~---------~~~~~~~~~l-~  173 (332)
T 2ft3_A          107 LYISKNHLVEIPPNLP--SSLVELRIHD-NRIRKVPKGVFSGLRNMNCIEMGGNPLENS---------GFEPGAFDGL-K  173 (332)
T ss_dssp             EECCSSCCCSCCSSCC--TTCCEEECCS-SCCCCCCSGGGSSCSSCCEEECCSCCCBGG---------GSCTTSSCSC-C
T ss_pred             EECCCCcCCccCcccc--ccCCEEECCC-CccCccCHhHhCCCccCCEEECCCCccccC---------CCCcccccCC-c
Confidence            6666666555554443  5666666665 344455544455666666666666554210         1222334444 5


Q ss_pred             ccEEEeecCCCccCCCcccccCccEEEEEeC
Q 036269          216 LTSLHIDIPEGEIMPSDMSFQNLTSFSITIG  246 (623)
Q Consensus       216 L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~  246 (623)
                      |+.|++++|.+..+|... .++|++|+++++
T Consensus       174 L~~L~l~~n~l~~l~~~~-~~~L~~L~l~~n  203 (332)
T 2ft3_A          174 LNYLRISEAKLTGIPKDL-PETLNELHLDHN  203 (332)
T ss_dssp             CSCCBCCSSBCSSCCSSS-CSSCSCCBCCSS
T ss_pred             cCEEECcCCCCCccCccc-cCCCCEEECCCC
Confidence            666666665555444331 134444444443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.89  E-value=1.9e-24  Score=233.88  Aligned_cols=440  Identities=16%  Similarity=0.044  Sum_probs=219.3

Q ss_pred             CCChhhHhCCCcccEEEccCCcccc-cCCCch------------hhhccccCcEEeccCCcCCCCc--ccccC-Cc-CCc
Q 036269           72 DIPDPFFQGMKDLKVLDLGGSGVFS-LFSLPS------------SLSFLINLRTLSLHDCQHFGDL--SLIGE-LS-LLE  134 (623)
Q Consensus        72 ~l~~~~~~~l~~Lr~L~l~~~~~~~-~~~lp~------------~~~~l~~L~~L~l~~~~~l~~i--~~~~~-l~-~L~  134 (623)
                      ..+..++..+++|++|+++++.... .+.+|.            ....+++|++|++++|. +.+.  ..+.. ++ +|+
T Consensus        63 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~L~  141 (592)
T 3ogk_B           63 ATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMI-VSDLDLDRLAKARADDLE  141 (592)
T ss_dssp             SCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHHGGGCC
T ss_pred             cChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccE-ecHHHHHHHHHhccccCc
Confidence            3455666788888888887753210 012221            12266777777777775 5432  33333 23 377


Q ss_pred             EEEcCCCC-Cc--cccccccCCCccCEEeccCCCCCCc----CchhhhhccccCcEEEeccccccccccccccccccccc
Q 036269          135 ILDLSESD-VS--EIPVSFGRLGHLRLLDLTDCYNLEL----IPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKF  207 (623)
Q Consensus       135 ~L~l~~~~-i~--~lp~~i~~l~~L~~L~l~~~~~~~~----l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  207 (623)
                      +|++++|. +.  .++....++++|++|++++|.....    ++ .+...+++|++|++++|.+....       .....
T Consensus       142 ~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~n~~~~~~-------~~~l~  213 (592)
T 3ogk_B          142 TLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLH-ELAQHNTSLEVLNFYMTEFAKIS-------PKDLE  213 (592)
T ss_dssp             EEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHH-HHHHHCCCCCEEECTTCCCSSCC-------HHHHH
T ss_pred             EEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHH-HHHhcCCCccEEEeeccCCCccC-------HHHHH
Confidence            77777664 22  2333344667777777777542221    22 12456677777777766552000       01233


Q ss_pred             ccccCCCCccEEEeecCCCccCCCc-ccccCccEEEEEeCCCCCCCcchhhhhhhhcccccccceeeeccccccccchHH
Q 036269          208 IELGALSRLTSLHIDIPEGEIMPSD-MSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSRAMGLSQDMRISALPSW  286 (623)
Q Consensus       208 ~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~  286 (623)
                      ..+..+++|+.|++++|....++.. ..+++|+++.+..........                            ..+..
T Consensus       214 ~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~----------------------------~~~~~  265 (592)
T 3ogk_B          214 TIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMP----------------------------EKYMN  265 (592)
T ss_dssp             HHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCT----------------------------TSSSC
T ss_pred             HHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchH----------------------------HHHHH
Confidence            3345667777777777665554443 555666666665321100000                            00000


Q ss_pred             HHHHHhhceeEeecccCCcccccccccccCccCccEEEEecccCceeecccccccccccccccceeecccCccccccccc
Q 036269          287 IKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLLKLEWLMIVDNRNFVEICHG  366 (623)
Q Consensus       287 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~  366 (623)
                      +.. +++|+.+.+.++..  ..++.+ ...+++|++|++++|. +.....   ......+++|++|++.++.  .+....
T Consensus       266 l~~-~~~L~~L~l~~~~~--~~l~~~-~~~~~~L~~L~Ls~~~-l~~~~~---~~~~~~~~~L~~L~L~~~~--~~~~l~  335 (592)
T 3ogk_B          266 LVF-PRKLCRLGLSYMGP--NEMPIL-FPFAAQIRKLDLLYAL-LETEDH---CTLIQKCPNLEVLETRNVI--GDRGLE  335 (592)
T ss_dssp             CCC-CTTCCEEEETTCCT--TTGGGG-GGGGGGCCEEEETTCC-CCHHHH---HHHHTTCTTCCEEEEEGGG--HHHHHH
T ss_pred             hhc-cccccccCccccch--hHHHHH-HhhcCCCcEEecCCCc-CCHHHH---HHHHHhCcCCCEEeccCcc--CHHHHH
Confidence            000 14566666654321  111111 1345666666666663 221100   0023445666666665321  110000


Q ss_pred             ccCCCcCCCccEEEEee----------cCCcccccchhHHHhccccceEEEeccccceeeeeccceeccccccc-cccCc
Q 036269          367 QLPAGCLSNVKRLDVRD----------CGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEIERVNIAKEETE-LFSSL  435 (623)
Q Consensus       367 ~~~~~~~~~L~~L~l~~----------c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~-~~~~L  435 (623)
                      .+ ...+++|++|++++          |+.+++.........+++|++|++ .|+.++...        ...+. .+++|
T Consensus       336 ~~-~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~--------~~~l~~~~~~L  405 (592)
T 3ogk_B          336 VL-AQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNES--------LESIGTYLKNL  405 (592)
T ss_dssp             HH-HHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHH--------HHHHHHHCCSC
T ss_pred             HH-HHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccHHH--------HHHHHhhCCCC
Confidence            00 12345666666663          555554323333445666666666 335544321        11122 25566


Q ss_pred             cEEecCC---ccchhhccc---CCCcccccCCccEEEEEcCCC-cceeccCcccCcccchhhhhhcccccccceeccccC
Q 036269          436 EKLTLIG---LPRMTDIWK---GDTQFVSLHDLKKIRVVFCDE-LRQVFPANLGKKAAAEEMVLYRNRRDQIHIHATTST  508 (623)
Q Consensus       436 ~~L~l~~---c~~l~~i~~---~~~~~~~l~~L~~L~l~~C~~-l~~~~~~~l~~~~~L~~l~~~~~~~~~l~~~~~~~~  508 (623)
                      ++|++++   |..+++.+.   .+.....+++|++|++++|.. ++...                               
T Consensus       406 ~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~-------------------------------  454 (592)
T 3ogk_B          406 CDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLG-------------------------------  454 (592)
T ss_dssp             CEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHH-------------------------------
T ss_pred             cEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHH-------------------------------
Confidence            6666653   223332100   001123356666666655543 11110                               


Q ss_pred             CCCC-CCCCCccEEEEecCCCcceecchhhhhccCCCCEEEEccCCchhhhhcCCCCcccCcCCCcceeecCcccceecc
Q 036269          509 SSPT-PSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSRCPTLQEIIMNDEGEVGLQGASTEKITFPSLFSIQLC  587 (623)
Q Consensus       509 ~~~~-~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~  587 (623)
                      +..+ ..+++|+.|++++|. +++......+.++++|++|+|++|+ +++....     .      ....+++|++|+++
T Consensus       455 ~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~-----~------~~~~l~~L~~L~ls  521 (592)
T 3ogk_B          455 LSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIA-----A------AVTKLPSLRYLWVQ  521 (592)
T ss_dssp             HHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHH-----H------HHHHCSSCCEEEEE
T ss_pred             HHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC-CcHHHHH-----H------HHHhcCccCeeECc
Confidence            0011 247889999999865 6553333446788999999999999 5432110     0      23468999999999


Q ss_pred             cCcccceecCCCCcceeecCCccEEEec
Q 036269          588 LLDSLTCFCSSGSHATVEFLALEALQII  615 (623)
Q Consensus       588 ~c~~l~~~~~~~~~~~~~~~~L~~L~i~  615 (623)
                      +|+ ++..+. ... ...+|.+....+.
T Consensus       522 ~n~-it~~~~-~~l-~~~~p~l~~~~~~  546 (592)
T 3ogk_B          522 GYR-ASMTGQ-DLM-QMARPYWNIELIP  546 (592)
T ss_dssp             SCB-CCTTCT-TGG-GGCCTTEEEEEEC
T ss_pred             CCc-CCHHHH-HHH-HHhCCCcEEEEec
Confidence            997 665533 223 2345666555444

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.89  E-value=1.7e-21  Score=194.04  Aligned_cols=190  Identities=22%  Similarity=0.278  Sum_probs=108.9

Q ss_pred             CCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEecc
Q 036269           37 DLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLH  116 (623)
Q Consensus        37 ~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~  116 (623)
                      +++.++++++.++.+|.... +.++.|++++|.+..++...|.++++|++|++++|.+.  +..|..+..+++|++|+++
T Consensus        32 ~l~~l~~~~~~l~~lp~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~Ls  108 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPKDLP-PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS--KISPGAFAPLVKLERLYLS  108 (330)
T ss_dssp             ETTEEECTTSCCCSCCCSCC-TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC--CBCTTTTTTCTTCCEEECC
T ss_pred             CCeEEEecCCCccccCccCC-CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCC--eeCHHHhcCCCCCCEEECC
Confidence            56667777766666665442 56677777777776666555567777777777777763  3335666677777777777


Q ss_pred             CCcCCCCc-ccccCCcCCcEEEcCCCCCcccc-ccccCCCccCEEeccCCCCCC-cCchhhhhccccCcEEEeccccccc
Q 036269          117 DCQHFGDL-SLIGELSLLEILDLSESDVSEIP-VSFGRLGHLRLLDLTDCYNLE-LIPRGVLSRLRKLEELYMSKTFCHW  193 (623)
Q Consensus       117 ~~~~l~~i-~~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~-~l~~~~~~~l~~L~~L~l~~~~~~~  193 (623)
                      +|. ++.+ ..+.  ++|++|++++|.++.++ ..+.++++|++|++++|.... ......+.++++|+.|++++|.+. 
T Consensus       109 ~n~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-  184 (330)
T 1xku_A          109 KNQ-LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-  184 (330)
T ss_dssp             SSC-CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-
T ss_pred             CCc-CCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-
Confidence            766 6554 2221  56777777776666554 345666677777766643211 122223566666666666666552 


Q ss_pred             ccccccccccccccccccCCCCccEEEeecCCCccCCCc--ccccCccEEEEEeC
Q 036269          194 QFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSD--MSFQNLTSFSITIG  246 (623)
Q Consensus       194 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~  246 (623)
                                 .++..+.  ++|+.|++++|.+..++..  ..+++|+.|+++++
T Consensus       185 -----------~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n  226 (330)
T 1xku_A          185 -----------TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN  226 (330)
T ss_dssp             -----------SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS
T ss_pred             -----------cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC
Confidence                       2222221  4566666666655444222  34444444444433

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.88  E-value=2e-21  Score=193.39  Aligned_cols=168  Identities=18%  Similarity=0.256  Sum_probs=135.4

Q ss_pred             CcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCch-hhhccccCcEEeccCCcCCCCc--ccccCCcCCcE
Q 036269           59 RLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPS-SLSFLINLRTLSLHDCQHFGDL--SLIGELSLLEI  135 (623)
Q Consensus        59 ~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~L~~  135 (623)
                      +++.++++++.+..+|..+   .+.+++|++++|.+   ..++. .+.++++|++|++++|. +..+  ..++.+++|++
T Consensus        32 ~l~~l~~~~~~l~~lp~~~---~~~l~~L~L~~n~i---~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~  104 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPKDL---PPDTALLDLQNNKI---TEIKDGDFKNLKNLHTLILINNK-ISKISPGAFAPLVKLER  104 (330)
T ss_dssp             ETTEEECTTSCCCSCCCSC---CTTCCEEECCSSCC---CCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTTTTCTTCCE
T ss_pred             CCeEEEecCCCccccCccC---CCCCeEEECCCCcC---CEeChhhhccCCCCCEEECCCCc-CCeeCHHHhcCCCCCCE
Confidence            6899999999999888754   47899999999999   55554 78999999999999998 8766  57899999999


Q ss_pred             EEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecccccccccccccccccccccccccCCCC
Q 036269          136 LDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSR  215 (623)
Q Consensus       136 L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~  215 (623)
                      |++++|.++.+|..+.  ++|++|++++ +.+..++...+.++++|++|++++|.+..         ....+..++.+++
T Consensus       105 L~Ls~n~l~~l~~~~~--~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---------~~~~~~~~~~l~~  172 (330)
T 1xku_A          105 LYLSKNQLKELPEKMP--KTLQELRVHE-NEITKVRKSVFNGLNQMIVVELGTNPLKS---------SGIENGAFQGMKK  172 (330)
T ss_dssp             EECCSSCCSBCCSSCC--TTCCEEECCS-SCCCBBCHHHHTTCTTCCEEECCSSCCCG---------GGBCTTGGGGCTT
T ss_pred             EECCCCcCCccChhhc--ccccEEECCC-CcccccCHhHhcCCccccEEECCCCcCCc---------cCcChhhccCCCC
Confidence            9999999999987665  7999999999 56677777668999999999999987731         1234556788999


Q ss_pred             ccEEEeecCCCccCCCcccccCccEEEEEeC
Q 036269          216 LTSLHIDIPEGEIMPSDMSFQNLTSFSITIG  246 (623)
Q Consensus       216 L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~  246 (623)
                      |+.|++++|.+..+|... .++|+.|+++++
T Consensus       173 L~~L~l~~n~l~~l~~~~-~~~L~~L~l~~n  202 (330)
T 1xku_A          173 LSYIRIADTNITTIPQGL-PPSLTELHLDGN  202 (330)
T ss_dssp             CCEEECCSSCCCSCCSSC-CTTCSEEECTTS
T ss_pred             cCEEECCCCccccCCccc-cccCCEEECCCC
Confidence            999999998877666542 145555555443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.88  E-value=9.6e-22  Score=195.87  Aligned_cols=191  Identities=18%  Similarity=0.229  Sum_probs=150.0

Q ss_pred             CCCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEec
Q 036269           36 EDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSL  115 (623)
Q Consensus        36 ~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l  115 (623)
                      .+++.++++++.++.+|... .++++.|++++|.+..+++..|.++++|++|++++|.+.  ...|..+..+++|++|++
T Consensus        33 c~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           33 CHLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS--KIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             EETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC--EECGGGSTTCTTCCEEEC
T ss_pred             ccCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccC--ccCHhHhhCcCCCCEEEC
Confidence            36899999999999998766 368999999999999776666799999999999999994  445778999999999999


Q ss_pred             cCCcCCCCc-ccccCCcCCcEEEcCCCCCccccc-cccCCCccCEEeccCCCCCC-cCchhhhhccccCcEEEecccccc
Q 036269          116 HDCQHFGDL-SLIGELSLLEILDLSESDVSEIPV-SFGRLGHLRLLDLTDCYNLE-LIPRGVLSRLRKLEELYMSKTFCH  192 (623)
Q Consensus       116 ~~~~~l~~i-~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~-~l~~~~~~~l~~L~~L~l~~~~~~  192 (623)
                      ++|. +..+ ..+.  ++|++|++++|.++.+|. .+.++++|++|++++|.... ......+..+ +|+.|++++|.+.
T Consensus       110 ~~n~-l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~  185 (332)
T 2ft3_A          110 SKNH-LVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT  185 (332)
T ss_dssp             CSSC-CCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred             CCCc-CCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence            9998 8777 3333  899999999999998875 58899999999999954321 1333336667 9999999999873


Q ss_pred             cccccccccccccccccccCCCCccEEEeecCCCccCCCc--ccccCccEEEEEeCC
Q 036269          193 WQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSD--MSFQNLTSFSITIGG  247 (623)
Q Consensus       193 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~  247 (623)
                                  .++..+.  ++|+.|++++|.+..++..  ..+++|+.|+++++.
T Consensus       186 ------------~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~  228 (332)
T 2ft3_A          186 ------------GIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ  228 (332)
T ss_dssp             ------------SCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSC
T ss_pred             ------------ccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc
Confidence                        3343333  6899999999987766533  556666666665544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.88  E-value=4.9e-22  Score=199.78  Aligned_cols=198  Identities=19%  Similarity=0.180  Sum_probs=155.0

Q ss_pred             CCCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEec
Q 036269           36 EDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSL  115 (623)
Q Consensus        36 ~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l  115 (623)
                      +.....+.+++.++.+|.... ++|++|++++|.+..++...|.++++|++|++++|.+.  +..|..+.++++|++|++
T Consensus        31 ~~~~~c~~~~~~l~~iP~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L  107 (353)
T 2z80_A           31 DRNGICKGSSGSLNSIPSGLT-EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN--TIEEDSFSSLGSLEHLDL  107 (353)
T ss_dssp             CTTSEEECCSTTCSSCCTTCC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC--EECTTTTTTCTTCCEEEC
T ss_pred             CCCeEeeCCCCCccccccccc-ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccC--ccCHhhcCCCCCCCEEEC
Confidence            444557888888888887653 58999999999988777766789999999999999884  334566888999999999


Q ss_pred             cCCcCCCCc--ccccCCcCCcEEEcCCCCCccccc--cccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccccc
Q 036269          116 HDCQHFGDL--SLIGELSLLEILDLSESDVSEIPV--SFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFC  191 (623)
Q Consensus       116 ~~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~  191 (623)
                      ++|. +..+  ..++++++|++|++++|.++.+|.  .+.++++|++|++++|+.++.++...+.++++|++|++++|.+
T Consensus       108 s~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l  186 (353)
T 2z80_A          108 SYNY-LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL  186 (353)
T ss_dssp             CSSC-CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred             CCCc-CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence            9998 8776  347889999999999999988876  6888999999999987667777665588889999999988877


Q ss_pred             ccccccccccccccccccccCCCCccEEEeecCCCccCCCc--ccccCccEEEEEeCCC
Q 036269          192 HWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSD--MSFQNLTSFSITIGGP  248 (623)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~  248 (623)
                      .           ...+..++.+++|+.|++++|.+..++..  ..+++|+.|+++++..
T Consensus       187 ~-----------~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l  234 (353)
T 2z80_A          187 Q-----------SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDL  234 (353)
T ss_dssp             C-----------EECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBC
T ss_pred             C-----------ccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcc
Confidence            3           34466778888888888888876555543  3456677776666543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.86  E-value=1.1e-21  Score=193.14  Aligned_cols=252  Identities=17%  Similarity=0.195  Sum_probs=198.6

Q ss_pred             CCCCCCC-----CCCcEEEcccCCcc---cccccC-CCCCcceEEccC-CCCC-CCChhhHhCCCcccEEEccCCccccc
Q 036269           29 WPSINTF-----EDLTGISLMFNDIH---EVHEGL-QCPRLQALFLQK-NDLL-DIPDPFFQGMKDLKVLDLGGSGVFSL   97 (623)
Q Consensus        29 ~~~~~~~-----~~l~~L~l~~~~~~---~l~~~~-~~~~L~~L~l~~-~~~~-~l~~~~~~~l~~Lr~L~l~~~~~~~~   97 (623)
                      |.++..-     .++++|+++++.++   .+|..+ .+++|++|++++ |.+. .+|.. |.++++|++|++++|.+.  
T Consensus        38 w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~--  114 (313)
T 1ogq_A           38 WLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVS--  114 (313)
T ss_dssp             STTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCE--
T ss_pred             CcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCCeeC--
Confidence            7766432     68999999999987   477766 899999999995 8877 66665 599999999999999995  


Q ss_pred             CCCchhhhccccCcEEeccCCcCCC-Cc-ccccCCcCCcEEEcCCCCCc-cccccccCCC-ccCEEeccCCCCCCcCchh
Q 036269           98 FSLPSSLSFLINLRTLSLHDCQHFG-DL-SLIGELSLLEILDLSESDVS-EIPVSFGRLG-HLRLLDLTDCYNLELIPRG  173 (623)
Q Consensus        98 ~~lp~~~~~l~~L~~L~l~~~~~l~-~i-~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~-~L~~L~l~~~~~~~~l~~~  173 (623)
                      +.+|..+..+++|++|++++|. +. .+ ..++.+++|++|++++|.++ .+|..+++++ +|++|++++|...+.+|..
T Consensus       115 ~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~  193 (313)
T 1ogq_A          115 GAIPDFLSQIKTLVTLDFSYNA-LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT  193 (313)
T ss_dssp             EECCGGGGGCTTCCEEECCSSE-EESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG
T ss_pred             CcCCHHHhCCCCCCEEeCCCCc-cCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH
Confidence            5889999999999999999998 75 44 67899999999999999998 8899999998 9999999996555567765


Q ss_pred             hhhccccCcEEEecccccccccccccccccccccccccCCCCccEEEeecCCCccCCCc-ccccCccEEEEEeCCCCCCC
Q 036269          174 VLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSD-MSFQNLTSFSITIGGPEEVP  252 (623)
Q Consensus       174 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~  252 (623)
                       +..+. |+.|++++|.+.           ...+..++.+++|+.|++++|.+...+.. ..+++|++|+++++....  
T Consensus       194 -~~~l~-L~~L~Ls~N~l~-----------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~--  258 (313)
T 1ogq_A          194 -FANLN-LAFVDLSRNMLE-----------GDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYG--  258 (313)
T ss_dssp             -GGGCC-CSEEECCSSEEE-----------ECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEE--
T ss_pred             -HhCCc-ccEEECcCCccc-----------CcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccC--
Confidence             77887 999999999883           45567788999999999999986544333 667788888887665321  


Q ss_pred             cchhhhhhhhcccccccceeeeccccccccchHHHHHHHhhceeEeecccCCcccccccccccCccCccEEEEecccCce
Q 036269          253 LSDFIEVFSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMK  332 (623)
Q Consensus       253 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~  332 (623)
                                                   .+|.++..+ ++|++|++++|..... ++..  ..+++|+.+++.+++.+.
T Consensus       259 -----------------------------~~p~~l~~l-~~L~~L~Ls~N~l~~~-ip~~--~~l~~L~~l~l~~N~~lc  305 (313)
T 1ogq_A          259 -----------------------------TLPQGLTQL-KFLHSLNVSFNNLCGE-IPQG--GNLQRFDVSAYANNKCLC  305 (313)
T ss_dssp             -----------------------------CCCGGGGGC-TTCCEEECCSSEEEEE-CCCS--TTGGGSCGGGTCSSSEEE
T ss_pred             -----------------------------cCChHHhcC-cCCCEEECcCCccccc-CCCC--ccccccChHHhcCCCCcc
Confidence                                         233333333 7888999988864333 3443  568888888888886443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.86  E-value=6e-21  Score=189.09  Aligned_cols=196  Identities=21%  Similarity=0.294  Sum_probs=168.6

Q ss_pred             CCCCcEEEcccCCcccccccC-CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEE
Q 036269           35 FEDLTGISLMFNDIHEVHEGL-QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTL  113 (623)
Q Consensus        35 ~~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L  113 (623)
                      ..+++.|+++++.++.+|..+ .+++|++|++++|.+..+|..+ .++++|++|++++|.+   ..+|..+..+++|++|
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~-~~l~~L~~L~Ls~n~l---~~lp~~l~~l~~L~~L  155 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTM-QQFAGLETLTLARNPL---RALPASIASLNRLREL  155 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCG-GGGTTCSEEEEESCCC---CCCCGGGGGCTTCCEE
T ss_pred             ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHH-hccCCCCEEECCCCcc---ccCcHHHhcCcCCCEE
Confidence            378999999999999999877 8999999999999999888764 8999999999999999   7889999999999999


Q ss_pred             eccCCcCCCCc-ccc---------cCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcE
Q 036269          114 SLHDCQHFGDL-SLI---------GELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEE  183 (623)
Q Consensus       114 ~l~~~~~l~~i-~~~---------~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~  183 (623)
                      ++++|...+.+ ..+         .++++|++|++++|.++.+|..++++++|++|++++ +.+..+|.. +..+++|++
T Consensus       156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~-N~l~~l~~~-l~~l~~L~~  233 (328)
T 4fcg_A          156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRN-SPLSALGPA-IHHLPKLEE  233 (328)
T ss_dssp             EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEES-SCCCCCCGG-GGGCTTCCE
T ss_pred             ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccC-CCCCcCchh-hccCCCCCE
Confidence            99998744555 333         459999999999999999999999999999999999 456678876 899999999


Q ss_pred             EEecccccccccccccccccccccccccCCCCccEEEeecCC-CccCCCc-ccccCccEEEEEeCC
Q 036269          184 LYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPE-GEIMPSD-MSFQNLTSFSITIGG  247 (623)
Q Consensus       184 L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~-~~~~~L~~L~l~~~~  247 (623)
                      |++++|.+.           ...+..++.+++|+.|++++|. ...+|.. ..+++|+.|++++|.
T Consensus       234 L~Ls~n~~~-----------~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~  288 (328)
T 4fcg_A          234 LDLRGCTAL-----------RNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV  288 (328)
T ss_dssp             EECTTCTTC-----------CBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCT
T ss_pred             EECcCCcch-----------hhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCC
Confidence            999998773           4567788999999999999976 4566655 778888888887655

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.86  E-value=6.5e-21  Score=185.51  Aligned_cols=209  Identities=24%  Similarity=0.360  Sum_probs=163.1

Q ss_pred             cCCCCCCCCCCCCCCCCcEEEcccCCccccccc-C-CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCc-ccccC
Q 036269           22 AGVELKDWPSINTFEDLTGISLMFNDIHEVHEG-L-QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSG-VFSLF   98 (623)
Q Consensus        22 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~-~~~~~   98 (623)
                      .+..+..+| ....+++++|++++|.++.++.. + .+++|++|++++|.+..+++..|.++++|++|++++|. +   .
T Consensus        19 ~~~~l~~ip-~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l---~   94 (285)
T 1ozn_A           19 PQQGLQAVP-VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL---R   94 (285)
T ss_dssp             CSSCCSSCC-TTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC---C
T ss_pred             CcCCcccCC-cCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCc---c
Confidence            345567776 34567899999999988888753 3 78889999999998886655557888999999999886 6   4


Q ss_pred             CC-chhhhccccCcEEeccCCcCCCCc--ccccCCcCCcEEEcCCCCCccccc-cccCCCccCEEeccCCCCCCcCchhh
Q 036269           99 SL-PSSLSFLINLRTLSLHDCQHFGDL--SLIGELSLLEILDLSESDVSEIPV-SFGRLGHLRLLDLTDCYNLELIPRGV  174 (623)
Q Consensus        99 ~l-p~~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~~l~~~~  174 (623)
                      .+ |..+..+++|++|++++|. +..+  ..+.++++|++|++++|.++.+|. .++++++|++|++++ +.++.++...
T Consensus        95 ~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~  172 (285)
T 1ozn_A           95 SVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG-NRISSVPERA  172 (285)
T ss_dssp             CCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCEECTTT
T ss_pred             ccCHHHhcCCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCC-CcccccCHHH
Confidence            44 5678888999999999988 7665  457888899999999998887764 478889999999988 4666777666


Q ss_pred             hhccccCcEEEecccccccccccccccccccccccccCCCCccEEEeecCCCccCCCc--ccccCccEEEEEeCC
Q 036269          175 LSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSD--MSFQNLTSFSITIGG  247 (623)
Q Consensus       175 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~  247 (623)
                      +..+++|++|++++|.+.           ...+..++.+++|+.|++++|.+..++..  ..+++|+.+++++++
T Consensus       173 ~~~l~~L~~L~l~~n~l~-----------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          173 FRGLHSLDRLLLHQNRVA-----------HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP  236 (285)
T ss_dssp             TTTCTTCCEEECCSSCCC-----------EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             hcCccccCEEECCCCccc-----------ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence            788889999999888773           34466778888899999988887776654  667778888777664

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.85  E-value=1.2e-20  Score=186.93  Aligned_cols=211  Identities=21%  Similarity=0.273  Sum_probs=183.7

Q ss_pred             eeecCCCCCCCCC-CCCCCCCcEEEcccCCcccccccC-CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccc
Q 036269           19 LIKAGVELKDWPS-INTFEDLTGISLMFNDIHEVHEGL-QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFS   96 (623)
Q Consensus        19 ~~~~~~~~~~~~~-~~~~~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~   96 (623)
                      ....++.+..+|. +..+++|++|++++|.++.+|..+ .+++|++|++++|.+..+|.. +.++++|++|++++|.+. 
T Consensus        86 L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~n~~~-  163 (328)
T 4fcg_A           86 LELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPAS-IASLNRLRELSIRACPEL-  163 (328)
T ss_dssp             EEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGG-GGGCTTCCEEEEEEETTC-
T ss_pred             EEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHH-HhcCcCCCEEECCCCCCc-
Confidence            3444566777774 567899999999999999999877 899999999999999988876 599999999999998765 


Q ss_pred             cCCCchhhhc---------cccCcEEeccCCcCCCCc-ccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCC
Q 036269           97 LFSLPSSLSF---------LINLRTLSLHDCQHFGDL-SLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYN  166 (623)
Q Consensus        97 ~~~lp~~~~~---------l~~L~~L~l~~~~~l~~i-~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~  166 (623)
                       +.+|..+..         +++|++|++++|. ++.+ ..++++++|++|++++|.++.+|..++++++|++|++++|+.
T Consensus       164 -~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~  241 (328)
T 4fcg_A          164 -TELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTA  241 (328)
T ss_dssp             -CCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTT
T ss_pred             -cccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcc
Confidence             788877654         9999999999998 8777 679999999999999999999999999999999999999988


Q ss_pred             CCcCchhhhhccccCcEEEecccccccccccccccccccccccccCCCCccEEEeecCC-CccCCCc-ccccCccEEEEE
Q 036269          167 LELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPE-GEIMPSD-MSFQNLTSFSIT  244 (623)
Q Consensus       167 ~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~-~~~~~L~~L~l~  244 (623)
                      .+.+|.. +..+++|+.|++++|.+.           ...+..++.+++|+.|++++|. .+.+|.. ..+++|+.+.+.
T Consensus       242 ~~~~p~~-~~~l~~L~~L~L~~n~~~-----------~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~  309 (328)
T 4fcg_A          242 LRNYPPI-FGGRAPLKRLILKDCSNL-----------LTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP  309 (328)
T ss_dssp             CCBCCCC-TTCCCCCCEEECTTCTTC-----------CBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred             hhhhHHH-hcCCCCCCEEECCCCCch-----------hhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence            8888876 899999999999998773           5667788999999999999987 5777777 788888888765


Q ss_pred             e
Q 036269          245 I  245 (623)
Q Consensus       245 ~  245 (623)
                      .
T Consensus       310 ~  310 (328)
T 4fcg_A          310 P  310 (328)
T ss_dssp             G
T ss_pred             H
Confidence            3

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.85  E-value=3.3e-22  Score=216.32  Aligned_cols=409  Identities=14%  Similarity=0.083  Sum_probs=235.9

Q ss_pred             CCCCCCcEEEcccCC-ccccc---------------ccC-CCCCcceEEccCCCCC-CCChhhHhCCCcccEEEccCC-c
Q 036269           33 NTFEDLTGISLMFND-IHEVH---------------EGL-QCPRLQALFLQKNDLL-DIPDPFFQGMKDLKVLDLGGS-G   93 (623)
Q Consensus        33 ~~~~~l~~L~l~~~~-~~~l~---------------~~~-~~~~L~~L~l~~~~~~-~l~~~~~~~l~~Lr~L~l~~~-~   93 (623)
                      ..+++++.++++++. +..+.               ... .+++|+.|++++|.+. ..+..+...+++|++|++++| .
T Consensus        63 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~  142 (594)
T 2p1m_B           63 RRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEG  142 (594)
T ss_dssp             HHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEE
T ss_pred             hhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCC
Confidence            345789999999875 22221               112 5789999999999877 333333337999999999999 5


Q ss_pred             ccccCCCchhhhccccCcEEeccCCcCCCCc------ccccCCcCCcEEEcCCCC--Cc--cccccccCCCccCEEeccC
Q 036269           94 VFSLFSLPSSLSFLINLRTLSLHDCQHFGDL------SLIGELSLLEILDLSESD--VS--EIPVSFGRLGHLRLLDLTD  163 (623)
Q Consensus        94 ~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~i------~~~~~l~~L~~L~l~~~~--i~--~lp~~i~~l~~L~~L~l~~  163 (623)
                      +.. ..++..+.++++|++|++++|. +++.      .....+++|++|++++|.  +.  .++..+.++++|++|++++
T Consensus       143 ~~~-~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~  220 (594)
T 2p1m_B          143 FST-DGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNR  220 (594)
T ss_dssp             EEH-HHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCT
T ss_pred             CCH-HHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCC
Confidence            531 1255556689999999999998 6442      223477899999999986  32  3334445689999999999


Q ss_pred             CCCCCcCchhhhhccccCcEEEecccccccccccccccccccccccccCCCCccEE-EeecCCCccCCCc-ccccCccEE
Q 036269          164 CYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSL-HIDIPEGEIMPSD-MSFQNLTSF  241 (623)
Q Consensus       164 ~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L-~l~~~~~~~~~~~-~~~~~L~~L  241 (623)
                      |...+.++.. +.++++|++|++..+.....     .......+..++++++|+.+ .+.......++.. ..+++|++|
T Consensus       221 ~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~-----~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L  294 (594)
T 2p1m_B          221 AVPLEKLATL-LQRAPQLEELGTGGYTAEVR-----PDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTL  294 (594)
T ss_dssp             TSCHHHHHHH-HHHCTTCSEEECSBCCCCCC-----HHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEE
T ss_pred             CCcHHHHHHH-HhcCCcceEcccccccCccc-----hhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEE
Confidence            8677776654 88999999999765531000     00012334467788888888 3433333334433 467888888


Q ss_pred             EEEeCCCCCCCcchhhhhhhhcccccccceeeeccccccccchHHHHHHHhhceeEeecc--------cCCccccccccc
Q 036269          242 SITIGGPEEVPLSDFIEVFSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEILALGD--------VNDLENIVSDLA  313 (623)
Q Consensus       242 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~--------~~~~~~~~~~~~  313 (623)
                      +++++...   ...+..+   ....+.++.+.+..+. .......+...+++|++|++.+        +..+++......
T Consensus       295 ~L~~~~l~---~~~l~~~---~~~~~~L~~L~l~~~~-~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l  367 (594)
T 2p1m_B          295 NLSYATVQ---SYDLVKL---LCQCPKLQRLWVLDYI-EDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV  367 (594)
T ss_dssp             ECTTCCCC---HHHHHHH---HTTCTTCCEEEEEGGG-HHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHH
T ss_pred             EccCCCCC---HHHHHHH---HhcCCCcCEEeCcCcc-CHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHH
Confidence            88776521   1111111   1144667777776541 1111222233346788887743        233332111111


Q ss_pred             ccCccCccEEEEecccCceeecccccccccccccccceeecc-----cCcccccccc-cccC--CCcCCCccEEEEeecC
Q 036269          314 HDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLLKLEWLMIV-----DNRNFVEICH-GQLP--AGCLSNVKRLDVRDCG  385 (623)
Q Consensus       314 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~-----~~~~l~~~~~-~~~~--~~~~~~L~~L~l~~c~  385 (623)
                      ...+++|+.|.+..+ .++......   ....+++|+.|++.     +|..++.... ..++  ...+++|+.|++++  
T Consensus       368 ~~~~~~L~~L~~~~~-~l~~~~~~~---l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--  441 (594)
T 2p1m_B          368 SMGCPKLESVLYFCR-QMTNAALIT---IARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--  441 (594)
T ss_dssp             HHHCTTCCEEEEEES-CCCHHHHHH---HHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--
T ss_pred             HHhchhHHHHHHhcC-CcCHHHHHH---HHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--
Confidence            123677777755443 443221110   22346777777777     3444432100 0000  12467777777754  


Q ss_pred             CcccccchhHHHhccccceEEEeccccceeeeeccceeccccccccccCccEEecCCccchhhcccCCCcccccCCccEE
Q 036269          386 SVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEIERVNIAKEETELFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKI  465 (623)
Q Consensus       386 ~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~L~~L  465 (623)
                      .+++..+......+++|+.|++++|. +++.    +.   ......+++|++|++++|+. ++. ........+++|++|
T Consensus       442 ~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~----~~---~~l~~~~~~L~~L~L~~n~~-~~~-~~~~~~~~l~~L~~L  511 (594)
T 2p1m_B          442 LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDL----GM---HHVLSGCDSLRKLEIRDCPF-GDK-ALLANASKLETMRSL  511 (594)
T ss_dssp             SCCHHHHHHHHHHCTTCCEEEEESCC-SSHH----HH---HHHHHHCTTCCEEEEESCSC-CHH-HHHHTGGGGGGSSEE
T ss_pred             cccHHHHHHHHHhchhccEeeccCCC-CcHH----HH---HHHHhcCCCcCEEECcCCCC-cHH-HHHHHHHhCCCCCEE
Confidence            45543343333347778888887743 4322    11   11114477788888877754 321 001122446777788


Q ss_pred             EEEcCCC
Q 036269          466 RVVFCDE  472 (623)
Q Consensus       466 ~l~~C~~  472 (623)
                      ++++|+.
T Consensus       512 ~l~~~~~  518 (594)
T 2p1m_B          512 WMSSCSV  518 (594)
T ss_dssp             EEESSCC
T ss_pred             eeeCCCC
Confidence            8877754

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.85  E-value=3.9e-23  Score=216.29  Aligned_cols=166  Identities=16%  Similarity=0.065  Sum_probs=88.6

Q ss_pred             hhceeEeecccCCcccccccc---cccCccCccEEEEecccCceeecccccccccccccccceeecccCccccccccccc
Q 036269          292 LRSEILALGDVNDLENIVSDL---AHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLLKLEWLMIVDNRNFVEICHGQL  368 (623)
Q Consensus       292 ~~L~~L~l~~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~  368 (623)
                      ++|++|++++|.........+   ....+++|++|++++| .++.............+++|++|+++++. +.+.....+
T Consensus       227 ~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l  304 (461)
T 1z7x_W          227 ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEGARLL  304 (461)
T ss_dssp             TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHHHHHH
T ss_pred             CCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCC-CchHHHHHH
Confidence            667777776664322111111   0124677888888877 44432110000033446778888888775 332111111


Q ss_pred             C---CCcCCCccEEEEeecCCcccc----cchhHHHhccccceEEEeccccceeeeeccceeccccccc-cccCccEEec
Q 036269          369 P---AGCLSNVKRLDVRDCGSVLKI----LPSHLVQSFQNLQRLRVEGCELLVSVFEIERVNIAKEETE-LFSSLEKLTL  440 (623)
Q Consensus       369 ~---~~~~~~L~~L~l~~c~~l~~~----~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~-~~~~L~~L~l  440 (623)
                      .   ....++|+.|++++|. +++.    ++. .+..+++|++|++++ +.+++..    ...+...+. ..++|++|++
T Consensus       305 ~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~-~l~~~~~L~~L~Ls~-n~i~~~~----~~~l~~~l~~~~~~L~~L~L  377 (461)
T 1z7x_W          305 CETLLEPGCQLESLWVKSCS-FTAACCSHFSS-VLAQNRFLLELQISN-NRLEDAG----VRELCQGLGQPGSVLRVLWL  377 (461)
T ss_dssp             HHHHTSTTCCCCEEECTTSC-CBGGGHHHHHH-HHHHCSSCCEEECCS-SBCHHHH----HHHHHHHHTSTTCCCCEEEC
T ss_pred             HHHhccCCccceeeEcCCCC-CchHHHHHHHH-HHhhCCCccEEEccC-Ccccccc----HHHHHHHHcCCCCceEEEEC
Confidence            1   1123688888888864 4432    222 356778888888888 4555431    100011111 1568888888


Q ss_pred             CCccchh-----hcccCCCcccccCCccEEEEEcC
Q 036269          441 IGLPRMT-----DIWKGDTQFVSLHDLKKIRVVFC  470 (623)
Q Consensus       441 ~~c~~l~-----~i~~~~~~~~~l~~L~~L~l~~C  470 (623)
                      ++| .++     .+   +..+..+++|++|++++|
T Consensus       378 ~~n-~i~~~~~~~l---~~~l~~~~~L~~L~l~~N  408 (461)
T 1z7x_W          378 ADC-DVSDSSCSSL---AATLLANHSLRELDLSNN  408 (461)
T ss_dssp             TTS-CCCHHHHHHH---HHHHHHCCCCCEEECCSS
T ss_pred             CCC-CCChhhHHHH---HHHHHhCCCccEEECCCC
Confidence            888 454     22   333455788888888885

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.84  E-value=2.4e-20  Score=183.51  Aligned_cols=196  Identities=22%  Similarity=0.206  Sum_probs=141.0

Q ss_pred             cEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCC
Q 036269           39 TGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDC  118 (623)
Q Consensus        39 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~  118 (623)
                      +.++.+++.++.+|.... +++++|++++|.+..++..+|.++++|++|++++|.+...+..|..+..+++|++|++++|
T Consensus        10 ~~l~c~~~~l~~ip~~~~-~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n   88 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTGIP-SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN   88 (306)
T ss_dssp             TEEECCSSCCSSCCSCCC-TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred             CEEEcCCCCcccCCCCCC-CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence            457777777777776543 5788888888888888877778888888888888887321223566777888888888888


Q ss_pred             cCCCCc-ccccCCcCCcEEEcCCCCCccccc--cccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccccccccc
Q 036269          119 QHFGDL-SLIGELSLLEILDLSESDVSEIPV--SFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQF  195 (623)
Q Consensus       119 ~~l~~i-~~~~~l~~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~  195 (623)
                      . +..+ ..+..+++|++|++++|.++.++.  .+..+++|++|++++|. +...+...+..+++|++|++++|.+..  
T Consensus        89 ~-i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~--  164 (306)
T 2z66_A           89 G-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQE--  164 (306)
T ss_dssp             S-EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEEGG--
T ss_pred             c-cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCcccc--
Confidence            7 7666 557788888888888888886653  67788888888888854 444444447788888888888887621  


Q ss_pred             ccccccccccccccccCCCCccEEEeecCCCccCCCc--ccccCccEEEEEeCC
Q 036269          196 ENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSD--MSFQNLTSFSITIGG  247 (623)
Q Consensus       196 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~  247 (623)
                              ...+..++.+++|+.|++++|.+..++..  ..+++|+.|+++++.
T Consensus       165 --------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~  210 (306)
T 2z66_A          165 --------NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN  210 (306)
T ss_dssp             --------GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred             --------ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCc
Confidence                    13556677888888888888876655332  455566666555443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.84  E-value=2.5e-20  Score=187.29  Aligned_cols=258  Identities=19%  Similarity=0.215  Sum_probs=187.4

Q ss_pred             CCCCCCCCCCCCCCCCcEEEcccCCcccccc-cC-CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCC
Q 036269           23 GVELKDWPSINTFEDLTGISLMFNDIHEVHE-GL-QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSL  100 (623)
Q Consensus        23 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~l  100 (623)
                      ++.+..+|. ...+++++|++++|.++.++. .+ .+++|++|++++|.+..+++..|.++++|++|++++|.+   ..+
T Consensus        40 ~~~l~~iP~-~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l---~~~  115 (353)
T 2z80_A           40 SGSLNSIPS-GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL---SNL  115 (353)
T ss_dssp             STTCSSCCT-TCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC---SSC
T ss_pred             CCCcccccc-cccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC---CcC
Confidence            456777774 455799999999999999887 33 899999999999999977666679999999999999999   667


Q ss_pred             chh-hhccccCcEEeccCCcCCCCcc---cccCCcCCcEEEcCCC-CCccc-cccccCCCccCEEeccCCCCCCcCchhh
Q 036269          101 PSS-LSFLINLRTLSLHDCQHFGDLS---LIGELSLLEILDLSES-DVSEI-PVSFGRLGHLRLLDLTDCYNLELIPRGV  174 (623)
Q Consensus       101 p~~-~~~l~~L~~L~l~~~~~l~~i~---~~~~l~~L~~L~l~~~-~i~~l-p~~i~~l~~L~~L~l~~~~~~~~l~~~~  174 (623)
                      |.. +..+++|++|++++|. +..++   .+.++++|++|++++| .+..+ |..++++++|++|++++|. +...+...
T Consensus       116 ~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~  193 (353)
T 2z80_A          116 SSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD-LQSYEPKS  193 (353)
T ss_dssp             CHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECTTT
T ss_pred             CHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC-cCccCHHH
Confidence            765 8899999999999998 87773   5889999999999999 47766 4678999999999999954 45553334


Q ss_pred             hhccccCcEEEecccccccccccccccccccccc-cccCCCCccEEEeecCCCccCCCc-----ccccCccEEEEEeCCC
Q 036269          175 LSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFI-ELGALSRLTSLHIDIPEGEIMPSD-----MSFQNLTSFSITIGGP  248 (623)
Q Consensus       175 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~-----~~~~~L~~L~l~~~~~  248 (623)
                      +..+++|++|++++|.+.            ..+. .++.+++|+.|++++|.+..++..     .....++.+++..+..
T Consensus       194 l~~l~~L~~L~l~~n~l~------------~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l  261 (353)
T 2z80_A          194 LKSIQNVSHLILHMKQHI------------LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKI  261 (353)
T ss_dssp             TTTCSEEEEEEEECSCST------------THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBC
T ss_pred             HhccccCCeecCCCCccc------------cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccc
Confidence            899999999999999872            2222 244588999999999987665432     2344455555543321


Q ss_pred             CCCCcchhhhhhhhcccccccceeeeccccccccchHHHHHHHhhceeEeecccCCcccccccccccCccCccEEEEecc
Q 036269          249 EEVPLSDFIEVFSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGC  328 (623)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  328 (623)
                                                .+. .+..+|.++... ++|+.|++++|.. +.+... .+..+++|++|++++|
T Consensus       262 --------------------------~~~-~l~~l~~~l~~l-~~L~~L~Ls~N~l-~~i~~~-~~~~l~~L~~L~L~~N  311 (353)
T 2z80_A          262 --------------------------TDE-SLFQVMKLLNQI-SGLLELEFSRNQL-KSVPDG-IFDRLTSLQKIWLHTN  311 (353)
T ss_dssp             --------------------------CHH-HHHHHHHHHHTC-TTCCEEECCSSCC-CCCCTT-TTTTCTTCCEEECCSS
T ss_pred             --------------------------cCc-chhhhHHHHhcc-cCCCEEECCCCCC-CccCHH-HHhcCCCCCEEEeeCC
Confidence                                      111 111344444433 6677777766643 222221 1244566666666666

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.84  E-value=5e-21  Score=188.52  Aligned_cols=173  Identities=18%  Similarity=0.218  Sum_probs=143.6

Q ss_pred             CCcceEEccCCCCC---CCChhhHhCCCcccEEEccC-CcccccCCCchhhhccccCcEEeccCCcCCC-Cc-ccccCCc
Q 036269           58 PRLQALFLQKNDLL---DIPDPFFQGMKDLKVLDLGG-SGVFSLFSLPSSLSFLINLRTLSLHDCQHFG-DL-SLIGELS  131 (623)
Q Consensus        58 ~~L~~L~l~~~~~~---~l~~~~~~~l~~Lr~L~l~~-~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~-~i-~~~~~l~  131 (623)
                      .+++.|++++|.+.   .+|.. |.++++|++|++++ |.+.  +.+|..+.++++|++|++++|. +. .+ ..+.+++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~-l~~l~~L~~L~L~~~n~l~--~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~  125 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSS-LANLPYLNFLYIGGINNLV--GPIPPAIAKLTQLHYLYITHTN-VSGAIPDFLSQIK  125 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGG-GGGCTTCSEEEEEEETTEE--SCCCGGGGGCTTCSEEEEEEEC-CEEECCGGGGGCT
T ss_pred             ceEEEEECCCCCccCCcccChh-HhCCCCCCeeeCCCCCccc--ccCChhHhcCCCCCEEECcCCe-eCCcCCHHHhCCC
Confidence            57999999999998   46665 59999999999995 8886  6899999999999999999998 75 44 6789999


Q ss_pred             CCcEEEcCCCCCc-cccccccCCCccCEEeccCCCCCCcCchhhhhccc-cCcEEEeccccccccccccccccccccccc
Q 036269          132 LLEILDLSESDVS-EIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLR-KLEELYMSKTFCHWQFENEDDSRSNAKFIE  209 (623)
Q Consensus       132 ~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  209 (623)
                      +|++|++++|.++ .+|..+.++++|++|++++|...+.+|.. +..++ +|++|++++|.+.           ...+..
T Consensus       126 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~-----------~~~~~~  193 (313)
T 1ogq_A          126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLT-----------GKIPPT  193 (313)
T ss_dssp             TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEE-----------EECCGG
T ss_pred             CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeee-----------ccCChH
Confidence            9999999999998 78999999999999999996555578876 78887 9999999999883           355667


Q ss_pred             ccCCCCccEEEeecCCCccCCCc--ccccCccEEEEEeCC
Q 036269          210 LGALSRLTSLHIDIPEGEIMPSD--MSFQNLTSFSITIGG  247 (623)
Q Consensus       210 l~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~  247 (623)
                      ++.++ |+.|++++|.+......  ..+++|+.|+++++.
T Consensus       194 ~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~  232 (313)
T 1ogq_A          194 FANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS  232 (313)
T ss_dssp             GGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE
T ss_pred             HhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCc
Confidence            77776 99999999886544332  566777777776553

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.84  E-value=2.1e-22  Score=210.66  Aligned_cols=355  Identities=18%  Similarity=0.130  Sum_probs=200.4

Q ss_pred             CCCcEEEcccCCccccccc--C-CCCCcceEEccCCCCC-----CCChhhHhCCCcccEEEccCCcccccCCCchhh-hc
Q 036269           36 EDLTGISLMFNDIHEVHEG--L-QCPRLQALFLQKNDLL-----DIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSL-SF  106 (623)
Q Consensus        36 ~~l~~L~l~~~~~~~l~~~--~-~~~~L~~L~l~~~~~~-----~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~-~~  106 (623)
                      +++++|+++++.++..+..  + .+++|++|++++|.+.     .++ ..+..+++|++|++++|.+.  +..+..+ ..
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~-~~l~~~~~L~~L~Ls~n~l~--~~~~~~l~~~   79 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDIS-SALRVNPALAELNLRSNELG--DVGVHCVLQG   79 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHH-HHHHTCTTCCEEECTTCCCH--HHHHHHHHHT
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHH-HHHHhCCCcCEEeCCCCcCC--hHHHHHHHHH
Confidence            6788999998888644322  3 6788999999999876     223 33578899999999998884  3333333 33


Q ss_pred             cc----cCcEEeccCCcCCCC-----c-ccccCCcCCcEEEcCCCCCccc-cc----c-ccCCCccCEEeccCCCCCCc-
Q 036269          107 LI----NLRTLSLHDCQHFGD-----L-SLIGELSLLEILDLSESDVSEI-PV----S-FGRLGHLRLLDLTDCYNLEL-  169 (623)
Q Consensus       107 l~----~L~~L~l~~~~~l~~-----i-~~~~~l~~L~~L~l~~~~i~~l-p~----~-i~~l~~L~~L~l~~~~~~~~-  169 (623)
                      ++    +|++|++++|. +++     + ..+..+++|++|++++|.++.. +.    . ....++|++|++++|..... 
T Consensus        80 l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~  158 (461)
T 1z7x_W           80 LQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS  158 (461)
T ss_dssp             TCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred             HhhCCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH
Confidence            55    69999999988 753     2 5678888999999999987622 22    2 22356799999988643321 


Q ss_pred             ---CchhhhhccccCcEEEeccccccccccccccccccccccccc-----CCCCccEEEeecCCCccC-----CCc-ccc
Q 036269          170 ---IPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELG-----ALSRLTSLHIDIPEGEIM-----PSD-MSF  235 (623)
Q Consensus       170 ---l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~-----~~~-~~~  235 (623)
                         ++. .+..+++|++|++++|.+.           +..+..+.     ..++|+.|++++|.+...     +.. ..+
T Consensus       159 ~~~l~~-~l~~~~~L~~L~L~~n~i~-----------~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~  226 (461)
T 1z7x_W          159 CEPLAS-VLRAKPDFKELTVSNNDIN-----------EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASK  226 (461)
T ss_dssp             HHHHHH-HHHHCTTCCEEECCSSBCH-----------HHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHC
T ss_pred             HHHHHH-HHhhCCCCCEEECcCCCcc-----------hHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhC
Confidence               232 3567789999999888763           22222222     356889999988876542     222 456


Q ss_pred             cCccEEEEEeCCCCCCCcchhhhhhhhcccccccceeeeccccccccchHHHHHHHhhceeEeecccCCccc----cccc
Q 036269          236 QNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEILALGDVNDLEN----IVSD  311 (623)
Q Consensus       236 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~  311 (623)
                      ++|++|+++++.....   ...                        .+...+....++|++|++++|.....    +...
T Consensus       227 ~~L~~L~Ls~n~l~~~---~~~------------------------~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~  279 (461)
T 1z7x_W          227 ASLRELALGSNKLGDV---GMA------------------------ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV  279 (461)
T ss_dssp             TTCCEEECCSSBCHHH---HHH------------------------HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred             CCccEEeccCCcCChH---HHH------------------------HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH
Confidence            7888888776642110   000                        01111111124566666666542221    1111


Q ss_pred             ccccCccCccEEEEecccCceeeccccccc-ccccccccceeecccCcccccccccccC--CCcCCCccEEEEeecCCcc
Q 036269          312 LAHDGFNELMFLAIVGCNEMKYLLNSLERT-LRVTLLKLEWLMIVDNRNFVEICHGQLP--AGCLSNVKRLDVRDCGSVL  388 (623)
Q Consensus       312 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~--~~~~~~L~~L~l~~c~~l~  388 (623)
                      +  ..+++|++|++++| .+.......... .....++|+.|++++|. ++......++  ...+++|+.|++++| .++
T Consensus       280 l--~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~  354 (461)
T 1z7x_W          280 L--RAKESLKELSLAGN-ELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLE  354 (461)
T ss_dssp             H--HHCTTCCEEECTTC-CCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCH
T ss_pred             H--hhCCCcceEECCCC-CCchHHHHHHHHHhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-ccc
Confidence            1  23566666666666 332211100000 01112466677776665 2221111111  124567777777764 444


Q ss_pred             cccchhHHHh----ccccceEEEeccccceeeeeccceeccccccccccCccEEecCCc
Q 036269          389 KILPSHLVQS----FQNLQRLRVEGCELLVSVFEIERVNIAKEETELFSSLEKLTLIGL  443 (623)
Q Consensus       389 ~~~~~~~~~~----l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c  443 (623)
                      +..+......    .++|++|++++| .+++.    |+..++..+..+++|++|++++|
T Consensus       355 ~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~----~~~~l~~~l~~~~~L~~L~l~~N  408 (461)
T 1z7x_W          355 DAGVRELCQGLGQPGSVLRVLWLADC-DVSDS----SCSSLAATLLANHSLRELDLSNN  408 (461)
T ss_dssp             HHHHHHHHHHHTSTTCCCCEEECTTS-CCCHH----HHHHHHHHHHHCCCCCEEECCSS
T ss_pred             cccHHHHHHHHcCCCCceEEEECCCC-CCChh----hHHHHHHHHHhCCCccEEECCCC
Confidence            4323221111    457777777773 44421    11111444555677777777777

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.84  E-value=6.7e-20  Score=189.94  Aligned_cols=193  Identities=22%  Similarity=0.291  Sum_probs=154.6

Q ss_pred             CCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEecc
Q 036269           37 DLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLH  116 (623)
Q Consensus        37 ~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~  116 (623)
                      ..+.++.++..++.+|..+. ++++.|++++|.+..++...|.++++|++|++++|.+.  ...+..+..+++|++|+++
T Consensus        44 ~~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~--~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           44 QFSKVICVRKNLREVPDGIS-TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR--TIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             TSCEEECCSCCCSSCCSCCC-TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC--EECGGGGTTCSSCCEEECC
T ss_pred             CCCEEEeCCCCcCcCCCCCC-CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC--ccChhhccCCccCCEEECC
Confidence            45678888888888887664 67899999999998777666799999999999999984  3344678889999999999


Q ss_pred             CCcCCCCc--ccccCCcCCcEEEcCCCCCccccc-cccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccccccc
Q 036269          117 DCQHFGDL--SLIGELSLLEILDLSESDVSEIPV-SFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHW  193 (623)
Q Consensus       117 ~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~  193 (623)
                      +|. ++.+  ..+..+++|++|++++|.++.+|. .+.++++|++|++++|+.+..++...+.++++|+.|++++|.+. 
T Consensus       121 ~n~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-  198 (440)
T 3zyj_A          121 DNR-LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-  198 (440)
T ss_dssp             SSC-CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-
T ss_pred             CCc-CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-
Confidence            998 8777  468899999999999999987764 68899999999999988888888777889999999999998772 


Q ss_pred             ccccccccccccccccccCCCCccEEEeecCCCccCCCc--ccccCccEEEEEeC
Q 036269          194 QFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSD--MSFQNLTSFSITIG  246 (623)
Q Consensus       194 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~  246 (623)
                                 .+ ..+..+++|+.|++++|.+..++..  ..+++|+.|+++++
T Consensus       199 -----------~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n  241 (440)
T 3zyj_A          199 -----------EI-PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS  241 (440)
T ss_dssp             -----------SC-CCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             -----------cc-cccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCC
Confidence                       22 3477888899999998887666433  55566666655544

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.83  E-value=6.2e-20  Score=190.88  Aligned_cols=193  Identities=23%  Similarity=0.267  Sum_probs=152.8

Q ss_pred             CCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEecc
Q 036269           37 DLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLH  116 (623)
Q Consensus        37 ~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~  116 (623)
                      ..+.++.++..++.+|..+. ++++.|++++|.+..++...|.++++|++|++++|.+.  ...+..+..+++|++|+++
T Consensus        55 ~~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~--~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           55 QFSKVVCTRRGLSEVPQGIP-SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR--QIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             SSCEEECCSSCCSSCCSCCC-TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC--EECTTTTTTCTTCCEEECC
T ss_pred             CCcEEEECCCCcCccCCCCC-CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC--CcChhhccCcccCCEEECC
Confidence            45678888888888887653 68999999999998776666799999999999999984  3444678889999999999


Q ss_pred             CCcCCCCc--ccccCCcCCcEEEcCCCCCccccc-cccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccccccc
Q 036269          117 DCQHFGDL--SLIGELSLLEILDLSESDVSEIPV-SFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHW  193 (623)
Q Consensus       117 ~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~  193 (623)
                      +|. +..+  ..+..+++|++|++++|.++.+|. .+.++++|++|++++|+.++.++...+.++++|+.|++++|.+. 
T Consensus       132 ~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-  209 (452)
T 3zyi_A          132 DNW-LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-  209 (452)
T ss_dssp             SSC-CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-
T ss_pred             CCc-CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-
Confidence            998 8776  458889999999999999987764 68889999999999988888888777889999999999998772 


Q ss_pred             ccccccccccccccccccCCCCccEEEeecCCCccCCCc--ccccCccEEEEEeC
Q 036269          194 QFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSD--MSFQNLTSFSITIG  246 (623)
Q Consensus       194 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~  246 (623)
                                 . ...+..+++|+.|++++|.+..++..  ..+++|+.|+++++
T Consensus       210 -----------~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n  252 (452)
T 3zyi_A          210 -----------D-MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS  252 (452)
T ss_dssp             -----------S-CCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTS
T ss_pred             -----------c-cccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCC
Confidence                       2 23577888899999988887655433  44555555555443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.83  E-value=3.5e-19  Score=189.89  Aligned_cols=133  Identities=20%  Similarity=0.256  Sum_probs=81.2

Q ss_pred             CCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEecc
Q 036269           37 DLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLH  116 (623)
Q Consensus        37 ~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~  116 (623)
                      .++.|+++++.++.+|..+. ++|+.|++++|.+..+|.    .+++|++|++++|.+   ..+|.   .+++|++|+++
T Consensus        41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l---~~lp~---~l~~L~~L~Ls  109 (622)
T 3g06_A           41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQL---TSLPV---LPPGLLELSIF  109 (622)
T ss_dssp             CCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCC---SCCCC---CCTTCCEEEEC
T ss_pred             CCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcC---CcCCC---CCCCCCEEECc
Confidence            46667777777766665543 567777777776666654    456677777777766   45555   45667777776


Q ss_pred             CCcCCCCcccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccccc
Q 036269          117 DCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFC  191 (623)
Q Consensus       117 ~~~~l~~i~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~  191 (623)
                      +|. +..++.  .+++|++|++++|.++.+|..   +++|++|++++| .+..+|.    .+.+|+.|++++|.+
T Consensus       110 ~N~-l~~l~~--~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N-~l~~l~~----~~~~L~~L~L~~N~l  173 (622)
T 3g06_A          110 SNP-LTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPA----LPSELCKLWAYNNQL  173 (622)
T ss_dssp             SCC-CCCCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCC
T ss_pred             CCc-CCCCCC--CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCC-cCCCcCC----ccCCCCEEECCCCCC
Confidence            666 555533  456666666666666666643   356666666663 4444443    124555666665554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.83  E-value=5.6e-20  Score=178.85  Aligned_cols=196  Identities=19%  Similarity=0.245  Sum_probs=160.2

Q ss_pred             CcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccC
Q 036269           38 LTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHD  117 (623)
Q Consensus        38 l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~  117 (623)
                      -+.++.+++.++.+|... .++++.|++++|.+..++...|.++++|++|++++|.+.  +..|..+..+++|++|++++
T Consensus        13 ~~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           13 KVTTSCPQQGLQAVPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA--RIDAAAFTGLALLEQLDLSD   89 (285)
T ss_dssp             SCEEECCSSCCSSCCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC--EECTTTTTTCTTCCEEECCS
T ss_pred             CeEEEcCcCCcccCCcCC-CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccc--eeCHhhcCCccCCCEEeCCC
Confidence            367888888899888654 468999999999999887777899999999999999984  34467889999999999999


Q ss_pred             CcCCCCc--ccccCCcCCcEEEcCCCCCccc-cccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecccccccc
Q 036269          118 CQHFGDL--SLIGELSLLEILDLSESDVSEI-PVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQ  194 (623)
Q Consensus       118 ~~~l~~i--~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~  194 (623)
                      |..++.+  ..+..+++|++|++++|.++.+ |..+.++++|++|++++ +.++.++...+..+++|++|++++|.+.  
T Consensus        90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~--  166 (285)
T 1ozn_A           90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD-NALQALPDDTFRDLGNLTHLFLHGNRIS--  166 (285)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCC--
T ss_pred             CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCC-CcccccCHhHhccCCCccEEECCCCccc--
Confidence            9646665  5788999999999999999966 56788999999999999 5667777766889999999999999873  


Q ss_pred             cccccccccccccccccCCCCccEEEeecCCCccCCC-c-ccccCccEEEEEeCCC
Q 036269          195 FENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPS-D-MSFQNLTSFSITIGGP  248 (623)
Q Consensus       195 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~-~~~~~L~~L~l~~~~~  248 (623)
                               ......++.+++|+.|++++|.+..+.. . ..+++|+.|+++++..
T Consensus       167 ---------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  213 (285)
T 1ozn_A          167 ---------SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL  213 (285)
T ss_dssp             ---------EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             ---------ccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcC
Confidence                     2223357889999999999998766633 3 5677777777776653

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.83  E-value=1.4e-19  Score=178.03  Aligned_cols=213  Identities=21%  Similarity=0.231  Sum_probs=176.9

Q ss_pred             cCCCCCCCCCCCCCCCCcEEEcccCCcccccccC--CCCCcceEEccCCCCCCC---ChhhHhCCCcccEEEccCCcccc
Q 036269           22 AGVELKDWPSINTFEDLTGISLMFNDIHEVHEGL--QCPRLQALFLQKNDLLDI---PDPFFQGMKDLKVLDLGGSGVFS   96 (623)
Q Consensus        22 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~l---~~~~~~~l~~Lr~L~l~~~~~~~   96 (623)
                      .+.++..+|. ...++++.|++++|.++.++...  .+++|+.|++++|.+..+   +.. +..+++|++|++++|.+  
T Consensus        15 ~~~~l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~~~L~~L~Ls~n~i--   90 (306)
T 2z66_A           15 NSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS-DFGTTSLKYLDLSFNGV--   90 (306)
T ss_dssp             CSSCCSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH-HHSCSCCCEEECCSCSE--
T ss_pred             CCCCcccCCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccc-cccccccCEEECCCCcc--
Confidence            3456777774 45589999999999999998853  899999999999998744   344 47899999999999999  


Q ss_pred             cCCCchhhhccccCcEEeccCCcCCCCc---ccccCCcCCcEEEcCCCCCcc-ccccccCCCccCEEeccCCCCCC-cCc
Q 036269           97 LFSLPSSLSFLINLRTLSLHDCQHFGDL---SLIGELSLLEILDLSESDVSE-IPVSFGRLGHLRLLDLTDCYNLE-LIP  171 (623)
Q Consensus        97 ~~~lp~~~~~l~~L~~L~l~~~~~l~~i---~~~~~l~~L~~L~l~~~~i~~-lp~~i~~l~~L~~L~l~~~~~~~-~l~  171 (623)
                       ..+|..+..+++|++|++++|. +..+   ..+..+++|++|++++|.+.. .|..+..+++|++|++++|.... ..|
T Consensus        91 -~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  168 (306)
T 2z66_A           91 -ITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP  168 (306)
T ss_dssp             -EEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEEC
T ss_pred             -ccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccch
Confidence             6788888999999999999998 7655   468899999999999999984 45678899999999999965443 245


Q ss_pred             hhhhhccccCcEEEecccccccccccccccccccccccccCCCCccEEEeecCCCccCCCc--ccccCccEEEEEeCCCC
Q 036269          172 RGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSD--MSFQNLTSFSITIGGPE  249 (623)
Q Consensus       172 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~  249 (623)
                      .. +..+++|++|++++|.+.           ...+..++.+++|+.|++++|.+..++..  ..+++|+.|+++++...
T Consensus       169 ~~-~~~l~~L~~L~Ls~n~l~-----------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  236 (306)
T 2z66_A          169 DI-FTELRNLTFLDLSQCQLE-----------QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM  236 (306)
T ss_dssp             SC-CTTCTTCCEEECTTSCCC-----------EECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCC
T ss_pred             hH-HhhCcCCCEEECCCCCcC-----------CcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCc
Confidence            54 899999999999999873           34466788999999999999998887764  67899999999988765


Q ss_pred             CCC
Q 036269          250 EVP  252 (623)
Q Consensus       250 ~~~  252 (623)
                      ...
T Consensus       237 ~~~  239 (306)
T 2z66_A          237 TSK  239 (306)
T ss_dssp             BCS
T ss_pred             ccC
Confidence            443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.82  E-value=1.2e-20  Score=186.45  Aligned_cols=262  Identities=14%  Similarity=0.120  Sum_probs=191.5

Q ss_pred             CCcEEEcccCCcccccccC--CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEe
Q 036269           37 DLTGISLMFNDIHEVHEGL--QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLS  114 (623)
Q Consensus        37 ~l~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~  114 (623)
                      +++..+++.+.+...+...  .+++|+.|++++|.+..+++..|.++++|++|++++|.+   ...+. +..+++|++|+
T Consensus        11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l---~~~~~-~~~l~~L~~L~   86 (317)
T 3o53_A           11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL---YETLD-LESLSTLRTLD   86 (317)
T ss_dssp             EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCC---EEEEE-ETTCTTCCEEE
T ss_pred             ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcC---Ccchh-hhhcCCCCEEE
Confidence            3555666666666554433  567899999999999988877789999999999999998   44444 88999999999


Q ss_pred             ccCCcCCCCcccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecccccccc
Q 036269          115 LHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQ  194 (623)
Q Consensus       115 l~~~~~l~~i~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~  194 (623)
                      +++|. ++.+.   ..++|++|++++|.++.++.  ..+++|++|++++ +.+..++...+..+++|++|++++|.+.  
T Consensus        87 Ls~n~-l~~l~---~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~--  157 (317)
T 3o53_A           87 LNNNY-VQELL---VGPSIETLHAANNNISRVSC--SRGQGKKNIYLAN-NKITMLRDLDEGCRSRVQYLDLKLNEID--  157 (317)
T ss_dssp             CCSSE-EEEEE---ECTTCCEEECCSSCCSEEEE--CCCSSCEEEECCS-SCCCSGGGBCTGGGSSEEEEECTTSCCC--
T ss_pred             CcCCc-ccccc---CCCCcCEEECCCCccCCcCc--cccCCCCEEECCC-CCCCCccchhhhccCCCCEEECCCCCCC--
Confidence            99998 65543   44899999999999997764  3478999999999 5566666555888999999999999873  


Q ss_pred             cccccccccccccccc-cCCCCccEEEeecCCCccCCCcccccCccEEEEEeCCCCCCCcchhhhhhhhcccccccceee
Q 036269          195 FENEDDSRSNAKFIEL-GALSRLTSLHIDIPEGEIMPSDMSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSRAMG  273 (623)
Q Consensus       195 ~~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  273 (623)
                               ...+..+ +.+++|+.|++++|.+..++....+++|+.|+++++....                       
T Consensus       158 ---------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~-----------------------  205 (317)
T 3o53_A          158 ---------TVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAF-----------------------  205 (317)
T ss_dssp             ---------EEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCE-----------------------
T ss_pred             ---------cccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCc-----------------------
Confidence                     2334444 4688999999999998877666668888888888765332                       


Q ss_pred             eccccccccchHHHHHHHhhceeEeecccCCcccccccccccCccCccEEEEecccCce-eeccccccccccccccccee
Q 036269          274 LSQDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMK-YLLNSLERTLRVTLLKLEWL  352 (623)
Q Consensus       274 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~~~~~~~~L~~L  352 (623)
                               +|..+.. +++|+.|++++|.. ..+...+  ..+++|+.|++++|+ +. .....    ....+++|+.+
T Consensus       206 ---------l~~~~~~-l~~L~~L~L~~N~l-~~l~~~~--~~l~~L~~L~l~~N~-~~~~~~~~----~~~~~~~L~~l  267 (317)
T 3o53_A          206 ---------MGPEFQS-AAGVTWISLRNNKL-VLIEKAL--RFSQNLEHFDLRGNG-FHCGTLRD----FFSKNQRVQTV  267 (317)
T ss_dssp             ---------ECGGGGG-GTTCSEEECTTSCC-CEECTTC--CCCTTCCEEECTTCC-CBHHHHHH----HHHTCHHHHHH
T ss_pred             ---------chhhhcc-cCcccEEECcCCcc-cchhhHh--hcCCCCCEEEccCCC-ccCcCHHH----HHhccccceEE
Confidence                     2222222 27888888888753 3443333  567888899888884 33 11111    44557778888


Q ss_pred             ecccCcccc
Q 036269          353 MIVDNRNFV  361 (623)
Q Consensus       353 ~l~~~~~l~  361 (623)
                      ++.++..++
T Consensus       268 ~l~~~~~l~  276 (317)
T 3o53_A          268 AKQTVKKLT  276 (317)
T ss_dssp             HHHHHHHHH
T ss_pred             ECCCchhcc
Confidence            887666543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.81  E-value=6.2e-19  Score=182.68  Aligned_cols=212  Identities=24%  Similarity=0.338  Sum_probs=177.9

Q ss_pred             cCCCCCCCCCCCCCCCCcEEEcccCCccccccc-C-CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCC
Q 036269           22 AGVELKDWPSINTFEDLTGISLMFNDIHEVHEG-L-QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFS   99 (623)
Q Consensus        22 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~   99 (623)
                      .+..+..+|. ...+.++.|++++|.++.++.. + .+++|+.|++++|.+..++...|.++++|++|++++|.+   ..
T Consensus        51 ~~~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l---~~  126 (440)
T 3zyj_A           51 VRKNLREVPD-GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL---TT  126 (440)
T ss_dssp             CSCCCSSCCS-CCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC---SS
T ss_pred             CCCCcCcCCC-CCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC---Ce
Confidence            3456777773 4558899999999999988753 3 899999999999999988877789999999999999999   56


Q ss_pred             Cch-hhhccccCcEEeccCCcCCCCc--ccccCCcCCcEEEcCCC-CCccccc-cccCCCccCEEeccCCCCCCcCchhh
Q 036269          100 LPS-SLSFLINLRTLSLHDCQHFGDL--SLIGELSLLEILDLSES-DVSEIPV-SFGRLGHLRLLDLTDCYNLELIPRGV  174 (623)
Q Consensus       100 lp~-~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~L~~L~l~~~-~i~~lp~-~i~~l~~L~~L~l~~~~~~~~l~~~~  174 (623)
                      +|. .+..+++|++|++++|. +..+  ..+.++++|++|++++| .+..++. .+.++++|++|++++ +.++.+|.  
T Consensus       127 ~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~-n~l~~~~~--  202 (440)
T 3zyj_A          127 IPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM-CNLREIPN--  202 (440)
T ss_dssp             CCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTT-SCCSSCCC--
T ss_pred             eCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCC-CcCccccc--
Confidence            665 68899999999999999 8777  46889999999999984 5666664 688999999999999 56778885  


Q ss_pred             hhccccCcEEEecccccccccccccccccccccccccCCCCccEEEeecCCCccCCCc--ccccCccEEEEEeCCCCCCC
Q 036269          175 LSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSD--MSFQNLTSFSITIGGPEEVP  252 (623)
Q Consensus       175 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~  252 (623)
                      +..+++|+.|++++|.+.           ...+..+..+++|+.|++++|.+..++..  ..+++|+.|+++++.....+
T Consensus       203 ~~~l~~L~~L~Ls~N~l~-----------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  271 (440)
T 3zyj_A          203 LTPLIKLDELDLSGNHLS-----------AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLP  271 (440)
T ss_dssp             CTTCSSCCEEECTTSCCC-----------EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCC
T ss_pred             cCCCcccCEEECCCCccC-----------ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccC
Confidence            889999999999999873           34466788999999999999998777654  67889999999888755443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.81  E-value=7.8e-19  Score=182.59  Aligned_cols=211  Identities=24%  Similarity=0.326  Sum_probs=176.3

Q ss_pred             CCCCCCCCCCCCCCCCcEEEcccCCccccccc-C-CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCC
Q 036269           23 GVELKDWPSINTFEDLTGISLMFNDIHEVHEG-L-QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSL  100 (623)
Q Consensus        23 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~l  100 (623)
                      +.++..+|. ...++++.|++++|.++.+++. + .+++|+.|++++|.+..++...|.++++|++|++++|.+   ..+
T Consensus        63 ~~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l---~~~  138 (452)
T 3zyi_A           63 RRGLSEVPQ-GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL---TVI  138 (452)
T ss_dssp             SSCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC---SBC
T ss_pred             CCCcCccCC-CCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC---Ccc
Confidence            455677773 4557899999999999988554 3 899999999999999977766789999999999999999   566


Q ss_pred             ch-hhhccccCcEEeccCCcCCCCc--ccccCCcCCcEEEcCC-CCCccccc-cccCCCccCEEeccCCCCCCcCchhhh
Q 036269          101 PS-SLSFLINLRTLSLHDCQHFGDL--SLIGELSLLEILDLSE-SDVSEIPV-SFGRLGHLRLLDLTDCYNLELIPRGVL  175 (623)
Q Consensus       101 p~-~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~L~~L~l~~-~~i~~lp~-~i~~l~~L~~L~l~~~~~~~~l~~~~~  175 (623)
                      |. .+..+++|++|++++|. +..+  ..+.++++|++|++++ +.+..++. .+..+++|++|++++ +.+..+|.  +
T Consensus       139 ~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~-n~l~~~~~--~  214 (452)
T 3zyi_A          139 PSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM-CNIKDMPN--L  214 (452)
T ss_dssp             CTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTT-SCCSSCCC--C
T ss_pred             ChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCC-Cccccccc--c
Confidence            64 48889999999999999 8777  4688999999999998 46667764 588999999999999 56677775  7


Q ss_pred             hccccCcEEEecccccccccccccccccccccccccCCCCccEEEeecCCCccCCCc--ccccCccEEEEEeCCCCCCC
Q 036269          176 SRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSD--MSFQNLTSFSITIGGPEEVP  252 (623)
Q Consensus       176 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~  252 (623)
                      ..+++|+.|++++|.+.           ...+..+..+++|+.|++++|.+..++..  ..+++|+.|+++++.....+
T Consensus       215 ~~l~~L~~L~Ls~N~l~-----------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  282 (452)
T 3zyi_A          215 TPLVGLEELEMSGNHFP-----------EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLP  282 (452)
T ss_dssp             TTCTTCCEEECTTSCCS-----------EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             cccccccEEECcCCcCc-----------ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccC
Confidence            89999999999999883           44567789999999999999998777554  67899999999988755443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.81  E-value=8.1e-19  Score=169.76  Aligned_cols=209  Identities=22%  Similarity=0.253  Sum_probs=170.7

Q ss_pred             cCCCCCCCCCCCCCCCCcEEEcccCCcccccc-cC-CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCC
Q 036269           22 AGVELKDWPSINTFEDLTGISLMFNDIHEVHE-GL-QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFS   99 (623)
Q Consensus        22 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~   99 (623)
                      .+..+..+|. ...+++++|++++|.++.++. .+ .+++|++|++++|.+..++...|.++++|++|++++|.+.  ..
T Consensus        15 ~~~~l~~ip~-~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~   91 (276)
T 2z62_A           15 MELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ--SL   91 (276)
T ss_dssp             TTSCCSSCCS-SSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC--EE
T ss_pred             cCCCccccCC-CCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC--cc
Confidence            3445666664 334789999999999998876 33 8999999999999998777766799999999999999994  33


Q ss_pred             CchhhhccccCcEEeccCCcCCCCc--ccccCCcCCcEEEcCCCCCcc--ccccccCCCccCEEeccCCCCCCcCchhhh
Q 036269          100 LPSSLSFLINLRTLSLHDCQHFGDL--SLIGELSLLEILDLSESDVSE--IPVSFGRLGHLRLLDLTDCYNLELIPRGVL  175 (623)
Q Consensus       100 lp~~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~--lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~  175 (623)
                      .+..+..+++|++|++++|. +..+  ..++.+++|++|++++|.++.  +|..+.++++|++|++++ +.++.++...+
T Consensus        92 ~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~  169 (276)
T 2z62_A           92 ALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS-NKIQSIYCTDL  169 (276)
T ss_dssp             CTTTTTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS-SCCCEECGGGG
T ss_pred             ChhhhcCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCC-CCCCcCCHHHh
Confidence            44678899999999999998 8766  368899999999999999985  688999999999999999 45666665557


Q ss_pred             hccccCc----EEEecccccccccccccccccccccccccCCCCccEEEeecCCCccCCCc--ccccCccEEEEEeCC
Q 036269          176 SRLRKLE----ELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSD--MSFQNLTSFSITIGG  247 (623)
Q Consensus       176 ~~l~~L~----~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~  247 (623)
                      ..+.+|+    .|++++|.+.            ..+.......+|+.|++++|.+..++..  ..+++|+.+++++++
T Consensus       170 ~~l~~L~~l~l~L~ls~n~l~------------~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~  235 (276)
T 2z62_A          170 RVLHQMPLLNLSLDLSLNPMN------------FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP  235 (276)
T ss_dssp             HHHHTCTTCCEEEECCSSCCC------------EECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred             hhhhhccccceeeecCCCccc------------ccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence            7777777    8999999873            3333344445899999999998888775  678899999998776

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.80  E-value=8.3e-19  Score=172.13  Aligned_cols=196  Identities=19%  Similarity=0.261  Sum_probs=169.8

Q ss_pred             CCCCCCCCCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhcccc
Q 036269           30 PSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLIN  109 (623)
Q Consensus        30 ~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~  109 (623)
                      .....++++++|+++++.++.++....+++|+.|++++|.+..++.  +..+++|++|++++|.+   ..++ .+..+++
T Consensus        35 ~~~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l---~~~~-~~~~l~~  108 (308)
T 1h6u_A           35 VTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPL---KNVS-AIAGLQS  108 (308)
T ss_dssp             ECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCC---SCCG-GGTTCTT
T ss_pred             ecHHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcC---CCch-hhcCCCC
Confidence            3345578999999999999998865589999999999999998887  69999999999999998   5665 5889999


Q ss_pred             CcEEeccCCcCCCCcccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccc
Q 036269          110 LRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKT  189 (623)
Q Consensus       110 L~~L~l~~~~~l~~i~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~  189 (623)
                      |++|++++|. +..++.+..+++|++|++++|.++.++. ++.+++|++|++++| .+..++.  +..+++|+.|++++|
T Consensus       109 L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n  183 (308)
T 1h6u_A          109 IKTLDLTSTQ-ITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNA-QVSDLTP--LANLSKLTTLKADDN  183 (308)
T ss_dssp             CCEEECTTSC-CCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSS
T ss_pred             CCEEECCCCC-CCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCC-cCCCChh--hcCCCCCCEEECCCC
Confidence            9999999999 8888779999999999999999998875 889999999999994 6667776  789999999999999


Q ss_pred             ccccccccccccccccccccccCCCCccEEEeecCCCccCCCcccccCccEEEEEeCCCC
Q 036269          190 FCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSDMSFQNLTSFSITIGGPE  249 (623)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~  249 (623)
                      .+.            .. ..+..+++|+.|++++|.+..++....+++|+.|+++++...
T Consensus       184 ~l~------------~~-~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          184 KIS------------DI-SPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             CCC------------CC-GGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEEE
T ss_pred             ccC------------cC-hhhcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCeee
Confidence            873            22 237889999999999999888876678899999999988643

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.80  E-value=1.1e-18  Score=169.51  Aligned_cols=196  Identities=21%  Similarity=0.210  Sum_probs=167.3

Q ss_pred             CCCCCCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcE
Q 036269           33 NTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRT  112 (623)
Q Consensus        33 ~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~  112 (623)
                      ..+++++.++++++.++.+|..+. +.++.|++++|.+..++...|.++++|++|++++|.+   ..++.. ..+++|++
T Consensus         7 ~~l~~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l---~~~~~~-~~l~~L~~   81 (290)
T 1p9a_G            7 SKVASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL---TKLQVD-GTLPVLGT   81 (290)
T ss_dssp             ECSTTCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC---CEEECC-SCCTTCCE
T ss_pred             cccCCccEEECCCCCCCcCCCCCC-CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCcc---CcccCC-CCCCcCCE
Confidence            445789999999999999987664 6899999999999977766689999999999999998   556554 78999999


Q ss_pred             EeccCCcCCCCc-ccccCCcCCcEEEcCCCCCcccc-ccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecccc
Q 036269          113 LSLHDCQHFGDL-SLIGELSLLEILDLSESDVSEIP-VSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTF  190 (623)
Q Consensus       113 L~l~~~~~l~~i-~~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~  190 (623)
                      |++++|. +..+ ..+..+++|++|++++|.++.+| ..+..+++|++|++++ +.++.+|.+++..+++|+.|++++|.
T Consensus        82 L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~  159 (290)
T 1p9a_G           82 LDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNN  159 (290)
T ss_dssp             EECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             EECCCCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCC-CCCCccChhhcccccCCCEEECCCCc
Confidence            9999998 8777 56788999999999999999887 5689999999999999 56778888778899999999999998


Q ss_pred             ccccccccccccccccc-ccccCCCCccEEEeecCCCccCCCc-ccccCccEEEEEeCC
Q 036269          191 CHWQFENEDDSRSNAKF-IELGALSRLTSLHIDIPEGEIMPSD-MSFQNLTSFSITIGG  247 (623)
Q Consensus       191 ~~~~~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~  247 (623)
                      +.            .++ ..+..+++|+.|++++|.+..+|.. ....+|+.+.+.+++
T Consensus       160 l~------------~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          160 LT------------ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             CS------------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred             CC------------ccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence            83            233 3457789999999999999988887 667789999988776

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.79  E-value=7.1e-20  Score=180.81  Aligned_cols=266  Identities=18%  Similarity=0.172  Sum_probs=173.0

Q ss_pred             cceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCCcCCCCcccccCCcCCcEEEcC
Q 036269           60 LQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLS  139 (623)
Q Consensus        60 L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~i~~~~~l~~L~~L~l~  139 (623)
                      ++..+++.+.+...+..++..+++|++|++++|.+.  ...|..+..+++|++|++++|. +..+..+..+++|++|+++
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~l~~L~~L~Ls   88 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS--QISAADLAPFTKLELLNLSSNV-LYETLDLESLSTLRTLDLN   88 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCC--CCCHHHHTTCTTCCEEECTTSC-CEEEEEETTCTTCCEEECC
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCccC--cCCHHHhhCCCcCCEEECCCCc-CCcchhhhhcCCCCEEECc
Confidence            445556666666556666778889999999999884  3444678889999999999998 7666458888999999999


Q ss_pred             CCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecccccccccccccccccccccccccCCCCccEE
Q 036269          140 ESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSL  219 (623)
Q Consensus       140 ~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L  219 (623)
                      +|.++.+|.    .++|++|++++ +.+..++.   ..+++|++|++++|.+.           ...+..++.+++|+.|
T Consensus        89 ~n~l~~l~~----~~~L~~L~l~~-n~l~~~~~---~~~~~L~~L~l~~N~l~-----------~~~~~~~~~l~~L~~L  149 (317)
T 3o53_A           89 NNYVQELLV----GPSIETLHAAN-NNISRVSC---SRGQGKKNIYLANNKIT-----------MLRDLDEGCRSRVQYL  149 (317)
T ss_dssp             SSEEEEEEE----CTTCCEEECCS-SCCSEEEE---CCCSSCEEEECCSSCCC-----------SGGGBCTGGGSSEEEE
T ss_pred             CCccccccC----CCCcCEEECCC-CccCCcCc---cccCCCCEEECCCCCCC-----------CccchhhhccCCCCEE
Confidence            998887663    37889999988 45555653   34677888888888773           2334456677788888


Q ss_pred             EeecCCCccCCCcccccCccEEEEEeCCCCCCCcchhhhhhhhcccccccceeeeccccccccchHHHHHHHhhceeEee
Q 036269          220 HIDIPEGEIMPSDMSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEILAL  299 (623)
Q Consensus       220 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l  299 (623)
                      ++++|.+..++..                                                     .+...+++|++|++
T Consensus       150 ~Ls~N~l~~~~~~-----------------------------------------------------~~~~~l~~L~~L~L  176 (317)
T 3o53_A          150 DLKLNEIDTVNFA-----------------------------------------------------ELAASSDTLEHLNL  176 (317)
T ss_dssp             ECTTSCCCEEEGG-----------------------------------------------------GGGGGTTTCCEEEC
T ss_pred             ECCCCCCCcccHH-----------------------------------------------------HHhhccCcCCEEEC
Confidence            8877765433211                                                     00000145666666


Q ss_pred             cccCCcccccccccccCccCccEEEEecccCceeecccccccccccccccceeecccCcccccccccccCCCcCCCccEE
Q 036269          300 GDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLLKLEWLMIVDNRNFVEICHGQLPAGCLSNVKRL  379 (623)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L  379 (623)
                      ++|.. ..+ +..  ..+++|++|++++| .++.++.     ....+++|+.|+++++. ++.+. ..  ...+++|+.|
T Consensus       177 ~~N~l-~~~-~~~--~~l~~L~~L~Ls~N-~l~~l~~-----~~~~l~~L~~L~L~~N~-l~~l~-~~--~~~l~~L~~L  242 (317)
T 3o53_A          177 QYNFI-YDV-KGQ--VVFAKLKTLDLSSN-KLAFMGP-----EFQSAAGVTWISLRNNK-LVLIE-KA--LRFSQNLEHF  242 (317)
T ss_dssp             TTSCC-CEE-ECC--CCCTTCCEEECCSS-CCCEECG-----GGGGGTTCSEEECTTSC-CCEEC-TT--CCCCTTCCEE
T ss_pred             CCCcC-ccc-ccc--cccccCCEEECCCC-cCCcchh-----hhcccCcccEEECcCCc-ccchh-hH--hhcCCCCCEE
Confidence            65542 222 111  23677888888877 5555543     23456778888887775 43321 11  2356778888


Q ss_pred             EEeecCCcccccchhHHHhccccceEEEecccccee
Q 036269          380 DVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVS  415 (623)
Q Consensus       380 ~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~  415 (623)
                      ++++++...+..+ .++..++.|+.+++.+++.++.
T Consensus       243 ~l~~N~~~~~~~~-~~~~~~~~L~~l~l~~~~~l~~  277 (317)
T 3o53_A          243 DLRGNGFHCGTLR-DFFSKNQRVQTVAKQTVKKLTG  277 (317)
T ss_dssp             ECTTCCCBHHHHH-HHHHTCHHHHHHHHHHHHHHHS
T ss_pred             EccCCCccCcCHH-HHHhccccceEEECCCchhccC
Confidence            8887544324333 3467777777777776665543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.79  E-value=2.8e-18  Score=165.18  Aligned_cols=195  Identities=23%  Similarity=0.354  Sum_probs=159.0

Q ss_pred             CCCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchh-hhccccCcEEe
Q 036269           36 EDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSS-LSFLINLRTLS  114 (623)
Q Consensus        36 ~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~-~~~l~~L~~L~  114 (623)
                      ...+.++++++.++.+|.... ++++.|++++|.+..++...|.++++|++|++++|.+   ..+|.. +..+++|++|+
T Consensus        16 ~~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l---~~i~~~~~~~l~~L~~L~   91 (270)
T 2o6q_A           16 NNKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL---QTLPAGIFKELKNLETLW   91 (270)
T ss_dssp             TTTTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCC---SCCCTTTTSSCTTCCEEE
T ss_pred             CCCCEEEccCCCCCccCCCCC-CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCcc---CeeChhhhcCCCCCCEEE
Confidence            457889999999988887553 6789999999999888876678999999999999988   566654 57889999999


Q ss_pred             ccCCcCCCCc--ccccCCcCCcEEEcCCCCCcccc-ccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccccc
Q 036269          115 LHDCQHFGDL--SLIGELSLLEILDLSESDVSEIP-VSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFC  191 (623)
Q Consensus       115 l~~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~  191 (623)
                      +++|. +..+  ..+..+++|++|++++|.++.+| ..+..+++|++|++++ +.++.++...+..+++|++|++++|.+
T Consensus        92 l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l  169 (270)
T 2o6q_A           92 VTDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY-NELQSLPKGVFDKLTSLKELRLYNNQL  169 (270)
T ss_dssp             CCSSC-CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCCc-CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCC-CcCCccCHhHccCCcccceeEecCCcC
Confidence            99998 8766  46788899999999999998776 4578899999999999 567778877688899999999999877


Q ss_pred             ccccccccccccccccccccCCCCccEEEeecCCCccCCCc--ccccCccEEEEEeCC
Q 036269          192 HWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSD--MSFQNLTSFSITIGG  247 (623)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~  247 (623)
                      .           ...+..+..+++|+.|++++|.+..++..  ..+++|+.+++++++
T Consensus       170 ~-----------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          170 K-----------RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             S-----------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             c-----------EeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence            3           22234577889999999999988877765  667889998888775

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.79  E-value=5.7e-18  Score=163.03  Aligned_cols=189  Identities=24%  Similarity=0.386  Sum_probs=160.2

Q ss_pred             ecCCCCCCCCCCCCCCCCcEEEcccCCccccccc-C-CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccC
Q 036269           21 KAGVELKDWPSINTFEDLTGISLMFNDIHEVHEG-L-QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLF   98 (623)
Q Consensus        21 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~   98 (623)
                      ..+..+..+|. ...++++.|++++|.++.++.. + .+++|++|++++|.+..++..+|.++++|++|++++|.+   .
T Consensus        23 ~~~~~l~~ip~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l---~   98 (270)
T 2o6q_A           23 CSSKKLTAIPS-NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL---Q   98 (270)
T ss_dssp             CTTSCCSSCCS-CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCC---C
T ss_pred             ccCCCCCccCC-CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcC---C
Confidence            34466777774 3447899999999999988863 3 899999999999999999988889999999999999999   5


Q ss_pred             CCch-hhhccccCcEEeccCCcCCCCc--ccccCCcCCcEEEcCCCCCcccccc-ccCCCccCEEeccCCCCCCcCchhh
Q 036269           99 SLPS-SLSFLINLRTLSLHDCQHFGDL--SLIGELSLLEILDLSESDVSEIPVS-FGRLGHLRLLDLTDCYNLELIPRGV  174 (623)
Q Consensus        99 ~lp~-~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~l~~~~  174 (623)
                      .+|. .+..+++|++|++++|. +..+  ..++.+++|++|++++|.++.+|.. +..+++|++|++++ +.+..++...
T Consensus        99 ~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~  176 (270)
T 2o6q_A           99 ALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYN-NQLKRVPEGA  176 (270)
T ss_dssp             CCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTT
T ss_pred             cCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecC-CcCcEeChhH
Confidence            5654 56889999999999998 8776  4578999999999999999988754 78999999999999 5677788766


Q ss_pred             hhccccCcEEEecccccccccccccccccccccccccCCCCccEEEeecCCC
Q 036269          175 LSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEG  226 (623)
Q Consensus       175 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  226 (623)
                      +.++++|++|++++|.+.           ......+..+++|+.|++++|.+
T Consensus       177 ~~~l~~L~~L~L~~N~l~-----------~~~~~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          177 FDKLTELKTLKLDNNQLK-----------RVPEGAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             TTTCTTCCEEECCSSCCS-----------CCCTTTTTTCTTCCEEECCSSCB
T ss_pred             hccCCCcCEEECCCCcCC-----------cCCHHHhccccCCCEEEecCCCe
Confidence            889999999999999873           22233577899999999999875

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.79  E-value=2.5e-17  Score=175.63  Aligned_cols=189  Identities=19%  Similarity=0.150  Sum_probs=147.9

Q ss_pred             ceeeecCCCCCCCCCCCCCCCCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccc
Q 036269           17 KFLIKAGVELKDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFS   96 (623)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~   96 (623)
                      ......++.+..+|.. ..++++.|++++|.++.+|.  .+++|++|++++|.+..+|.    .+++|++|++++|.+  
T Consensus        43 ~~L~ls~n~L~~lp~~-l~~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l--  113 (622)
T 3g06_A           43 AVLNVGESGLTTLPDC-LPAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSNPL--  113 (622)
T ss_dssp             CEEECCSSCCSCCCSC-CCTTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSCCC--
T ss_pred             cEEEecCCCcCccChh-hCCCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCCcC--
Confidence            3445556778888853 34899999999999999987  57899999999999998885    689999999999999  


Q ss_pred             cCCCchhhhccccCcEEeccCCcCCCCcccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhh
Q 036269           97 LFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLS  176 (623)
Q Consensus        97 ~~~lp~~~~~l~~L~~L~l~~~~~l~~i~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~  176 (623)
                       ..+|.   .+++|+.|++++|. +..++.  .+++|++|++++|.++.+|.   .+.+|+.|++++ +.++.+|    .
T Consensus       114 -~~l~~---~l~~L~~L~L~~N~-l~~lp~--~l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~-N~l~~l~----~  178 (622)
T 3g06_A          114 -THLPA---LPSGLCKLWIFGNQ-LTSLPV--LPPGLQELSVSDNQLASLPA---LPSELCKLWAYN-NQLTSLP----M  178 (622)
T ss_dssp             -CCCCC---CCTTCCEEECCSSC-CSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCS-SCCSCCC----C
T ss_pred             -CCCCC---CCCCcCEEECCCCC-CCcCCC--CCCCCCEEECcCCcCCCcCC---ccCCCCEEECCC-CCCCCCc----c
Confidence             67776   67899999999998 877743  35899999999999998885   357899999999 5677777    3


Q ss_pred             ccccCcEEEecccccccccccccccccccccccccCCCCccEEEeecCCCccCCCcccccCccEEEEEeC
Q 036269          177 RLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSDMSFQNLTSFSITIG  246 (623)
Q Consensus       177 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~  246 (623)
                      .+++|+.|++++|.+.            .++.   .+++|+.|++++|.+..++..  +++|+.|++++|
T Consensus       179 ~~~~L~~L~Ls~N~l~------------~l~~---~~~~L~~L~L~~N~l~~l~~~--~~~L~~L~Ls~N  231 (622)
T 3g06_A          179 LPSGLQELSVSDNQLA------------SLPT---LPSELYKLWAYNNRLTSLPAL--PSGLKELIVSGN  231 (622)
T ss_dssp             CCTTCCEEECCSSCCS------------CCCC---CCTTCCEEECCSSCCSSCCCC--CTTCCEEECCSS
T ss_pred             cCCCCcEEECCCCCCC------------CCCC---ccchhhEEECcCCcccccCCC--CCCCCEEEccCC
Confidence            4688999999999872            2222   246788888888877665532  345555555444

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.77  E-value=1.2e-18  Score=164.58  Aligned_cols=201  Identities=14%  Similarity=0.259  Sum_probs=164.3

Q ss_pred             CCCCCCCCCCCCCCcEEEcccCCccccccc-C-CCCCcceEEccCCC-CCCCChhhHhCCCcccEEEccC-CcccccCCC
Q 036269           25 ELKDWPSINTFEDLTGISLMFNDIHEVHEG-L-QCPRLQALFLQKND-LLDIPDPFFQGMKDLKVLDLGG-SGVFSLFSL  100 (623)
Q Consensus        25 ~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~-~~~l~~~~~~~l~~Lr~L~l~~-~~~~~~~~l  100 (623)
                      .+..+|.  ..++++.|++++|.++.+++. + .+++|+.|++++|. +..++...|.++++|++|++++ |.+   ..+
T Consensus        22 ~l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l---~~i   96 (239)
T 2xwt_C           22 DIQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNL---TYI   96 (239)
T ss_dssp             SCSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTC---CEE
T ss_pred             CccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCe---eEc
Confidence            3777776  456899999999999988873 3 88999999999997 7778776789999999999998 888   555


Q ss_pred             c-hhhhccccCcEEeccCCcCCCCcccccCCcCCc---EEEcCCC-CCccccc-cccCCCccC-EEeccCCCCCCcCchh
Q 036269          101 P-SSLSFLINLRTLSLHDCQHFGDLSLIGELSLLE---ILDLSES-DVSEIPV-SFGRLGHLR-LLDLTDCYNLELIPRG  173 (623)
Q Consensus       101 p-~~~~~l~~L~~L~l~~~~~l~~i~~~~~l~~L~---~L~l~~~-~i~~lp~-~i~~l~~L~-~L~l~~~~~~~~l~~~  173 (623)
                      | ..+..+++|++|++++|. +..++.+..+++|+   +|++++| .++.+|. .+..+++|+ +|++++ +.++.+|..
T Consensus        97 ~~~~f~~l~~L~~L~l~~n~-l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~-n~l~~i~~~  174 (239)
T 2xwt_C           97 DPDALKELPLLKFLGIFNTG-LKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN-NGFTSVQGY  174 (239)
T ss_dssp             CTTSEECCTTCCEEEEEEEC-CCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS-CCCCEECTT
T ss_pred             CHHHhCCCCCCCEEeCCCCC-CccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCC-CCCcccCHh
Confidence            5 467889999999999998 87776688888888   9999999 9988875 488999999 999998 556688876


Q ss_pred             hhhccccCcEEEecccc-cccccccccccccccccccccCC-CCccEEEeecCCCccCCCcccccCccEEEEEe
Q 036269          174 VLSRLRKLEELYMSKTF-CHWQFENEDDSRSNAKFIELGAL-SRLTSLHIDIPEGEIMPSDMSFQNLTSFSITI  245 (623)
Q Consensus       174 ~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~  245 (623)
                      ++.. ++|+.|++++|. +.           ...+..++.+ ++|+.|++++|.+..+|.. .+++|+.|++.+
T Consensus       175 ~~~~-~~L~~L~L~~n~~l~-----------~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~l~~  235 (239)
T 2xwt_C          175 AFNG-TKLDAVYLNKNKYLT-----------VIDKDAFGGVYSGPSLLDVSQTSVTALPSK-GLEHLKELIARN  235 (239)
T ss_dssp             TTTT-CEEEEEECTTCTTCC-----------EECTTTTTTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEECTT
T ss_pred             hcCC-CCCCEEEcCCCCCcc-----------cCCHHHhhccccCCcEEECCCCccccCChh-HhccCceeeccC
Confidence            5555 899999999984 62           2223456778 8999999999998888766 678888887654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.77  E-value=1.6e-17  Score=162.89  Aligned_cols=188  Identities=22%  Similarity=0.286  Sum_probs=163.2

Q ss_pred             eecCCCCCCCCCCCCCCCCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCC
Q 036269           20 IKAGVELKDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFS   99 (623)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~   99 (623)
                      ...+..+..++.+..+++|+.|++++|.++.++....+++|+.|++++|.+..++.  +..+++|++|++++|.+   ..
T Consensus        47 ~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l---~~  121 (308)
T 1h6u_A           47 SAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQI---TD  121 (308)
T ss_dssp             ECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGG--GTTCTTCCEEECTTSCC---CC
T ss_pred             EeeCCCccCchhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCchh--hcCCCCCCEEECCCCCC---CC
Confidence            33455677888888999999999999999999885589999999999999988764  69999999999999999   56


Q ss_pred             CchhhhccccCcEEeccCCcCCCCcccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccc
Q 036269          100 LPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLR  179 (623)
Q Consensus       100 lp~~~~~l~~L~~L~l~~~~~l~~i~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~  179 (623)
                      ++. +..+++|++|++++|. +..+..++.+++|++|++++|.++.++. +..+++|+.|++++ +.+..++.  +..++
T Consensus       122 ~~~-l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~-n~l~~~~~--l~~l~  195 (308)
T 1h6u_A          122 VTP-LAGLSNLQVLYLDLNQ-ITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADD-NKISDISP--LASLP  195 (308)
T ss_dssp             CGG-GTTCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS-SCCCCCGG--GGGCT
T ss_pred             chh-hcCCCCCCEEECCCCc-cCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCC-CccCcChh--hcCCC
Confidence            665 8899999999999998 8888779999999999999999998876 89999999999999 56677775  78999


Q ss_pred             cCcEEEecccccccccccccccccccccccccCCCCccEEEeecCCCccCCC
Q 036269          180 KLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPS  231 (623)
Q Consensus       180 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  231 (623)
                      +|++|++++|.+.            ..+ .+..+++|+.|++++|.+...+.
T Consensus       196 ~L~~L~L~~N~l~------------~~~-~l~~l~~L~~L~l~~N~i~~~~~  234 (308)
T 1h6u_A          196 NLIEVHLKNNQIS------------DVS-PLANTSNLFIVTLTNQTITNQPV  234 (308)
T ss_dssp             TCCEEECTTSCCC------------BCG-GGTTCTTCCEEEEEEEEEECCCE
T ss_pred             CCCEEEccCCccC------------ccc-cccCCCCCCEEEccCCeeecCCe
Confidence            9999999999883            222 48899999999999998755543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.76  E-value=1.2e-18  Score=167.98  Aligned_cols=176  Identities=26%  Similarity=0.377  Sum_probs=103.1

Q ss_pred             CCCCCCCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCc-hhhhccccC
Q 036269           32 INTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLP-SSLSFLINL  110 (623)
Q Consensus        32 ~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp-~~~~~l~~L  110 (623)
                      ...+++++.|+++++.++.++....+++|++|++++|.+..++.  +.++++|++|++++|.+   ..++ ..+..+++|
T Consensus        37 ~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~n~l---~~~~~~~~~~l~~L  111 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISA--LKELTNLTYLILTGNQL---QSLPNGVFDKLTNL  111 (272)
T ss_dssp             HHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECTTSCC---CCCCTTTTTTCTTC
T ss_pred             cccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCchh--hcCCCCCCEEECCCCcc---CccChhHhcCCcCC
Confidence            34456666666666666666554466666666666666665432  46666666666666666   3333 335566666


Q ss_pred             cEEeccCCcCCCCc--ccccCCcCCcEEEcCCCCCcccccc-ccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEec
Q 036269          111 RTLSLHDCQHFGDL--SLIGELSLLEILDLSESDVSEIPVS-FGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMS  187 (623)
Q Consensus       111 ~~L~l~~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~  187 (623)
                      ++|++++|. +..+  ..++++++|++|++++|.++.+|.. ++++++|++|++++| .++.++...+..+++|++|+++
T Consensus       112 ~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~  189 (272)
T 3rfs_A          112 KELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLY  189 (272)
T ss_dssp             CEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred             CEEECCCCc-CCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECC
Confidence            666666666 5544  2356666666666666666655432 456666666666663 3445554445666666666666


Q ss_pred             ccccccccccccccccccccccccCCCCccEEEeecCC
Q 036269          188 KTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPE  225 (623)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  225 (623)
                      +|.+.           ...+..++.+++|+.|++++|.
T Consensus       190 ~N~l~-----------~~~~~~~~~l~~L~~L~l~~N~  216 (272)
T 3rfs_A          190 QNQLK-----------SVPDGVFDRLTSLQYIWLHDNP  216 (272)
T ss_dssp             SSCCS-----------CCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCcCC-----------ccCHHHHhCCcCCCEEEccCCC
Confidence            66552           2222334556666666666554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.75  E-value=2.4e-18  Score=179.87  Aligned_cols=237  Identities=15%  Similarity=0.119  Sum_probs=161.4

Q ss_pred             CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCCcCCCCcccccCCcCCcE
Q 036269           56 QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEI  135 (623)
Q Consensus        56 ~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~i~~~~~l~~L~~  135 (623)
                      .+++|+.|++++|.+..+++..|.++++|++|++++|.+.   ..++ +..+++|++|++++|. +..+.   ..++|++
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~---~~~~-l~~l~~L~~L~Ls~N~-l~~l~---~~~~L~~  103 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY---ETLD-LESLSTLRTLDLNNNY-VQELL---VGPSIET  103 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCE---EEEE-CTTCTTCCEEECCSSE-EEEEE---ECTTCCE
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCC---CCcc-cccCCCCCEEEecCCc-CCCCC---CCCCcCE
Confidence            3457888899888888777666788889999999888884   3333 7788889999998887 65543   3378888


Q ss_pred             EEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccccccccccccccccccccccccc-CCC
Q 036269          136 LDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELG-ALS  214 (623)
Q Consensus       136 L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~-~l~  214 (623)
                      |++++|.++.++.  ..+++|++|++++| .+..+++..++.+++|+.|++++|.+.           ...+..+. .++
T Consensus       104 L~L~~N~l~~~~~--~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~-----------~~~~~~l~~~l~  169 (487)
T 3oja_A          104 LHAANNNISRVSC--SRGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEID-----------TVNFAELAASSD  169 (487)
T ss_dssp             EECCSSCCCCEEE--CCCSSCEEEECCSS-CCCSGGGBCGGGGSSEEEEECTTSCCC-----------EEEGGGGGGGTT
T ss_pred             EECcCCcCCCCCc--cccCCCCEEECCCC-CCCCCCchhhcCCCCCCEEECCCCCCC-----------CcChHHHhhhCC
Confidence            9998888887664  35688888888884 445554434788888889998888773           33445554 678


Q ss_pred             CccEEEeecCCCccCCCcccccCccEEEEEeCCCCCCCcchhhhhhhhcccccccceeeeccccccccchHHHHHHHhhc
Q 036269          215 RLTSLHIDIPEGEIMPSDMSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLRS  294 (623)
Q Consensus       215 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L  294 (623)
                      +|+.|++++|.+..++....+++|+.|+++++....                                +|..+..+ ++|
T Consensus       170 ~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~--------------------------------~~~~~~~l-~~L  216 (487)
T 3oja_A          170 TLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAF--------------------------------MGPEFQSA-AGV  216 (487)
T ss_dssp             TCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCE--------------------------------ECGGGGGG-TTC
T ss_pred             cccEEecCCCccccccccccCCCCCEEECCCCCCCC--------------------------------CCHhHcCC-CCc
Confidence            888899888887777665667778888777665332                                22222222 678


Q ss_pred             eeEeecccCCcccccccccccCccCccEEEEecccCce-eecccccccccccccccceeecc
Q 036269          295 EILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMK-YLLNSLERTLRVTLLKLEWLMIV  355 (623)
Q Consensus       295 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~~~~~~~~L~~L~l~  355 (623)
                      +.|++++|.. ..++..+  ..+++|+.|++++|+-.. .++.     ....++.|+.+.+.
T Consensus       217 ~~L~Ls~N~l-~~lp~~l--~~l~~L~~L~l~~N~l~c~~~~~-----~~~~l~~L~~l~~~  270 (487)
T 3oja_A          217 TWISLRNNKL-VLIEKAL--RFSQNLEHFDLRGNGFHCGTLRD-----FFSKNQRVQTVAKQ  270 (487)
T ss_dssp             SEEECTTSCC-CEECTTC--CCCTTCCEEECTTCCBCHHHHHH-----HHTTCHHHHHHHHH
T ss_pred             cEEEecCCcC-cccchhh--ccCCCCCEEEcCCCCCcCcchHH-----HHHhCCCCcEEecc
Confidence            8888877653 3333333  456788888888873221 1111     23445666666664

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.75  E-value=2.8e-17  Score=159.49  Aligned_cols=186  Identities=22%  Similarity=0.190  Sum_probs=161.0

Q ss_pred             ecCCCCCCCCCCCCCCCCcEEEcccCCccccccc-C-CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccC
Q 036269           21 KAGVELKDWPSINTFEDLTGISLMFNDIHEVHEG-L-QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLF   98 (623)
Q Consensus        21 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~   98 (623)
                      ..+..+..+|. ...+.++.|++++|.++.++.. + .+++|+.|++++|.+..++.  ...+++|++|++++|.+   .
T Consensus        17 ~~~~~l~~ip~-~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l---~   90 (290)
T 1p9a_G           17 CDKRNLTALPP-DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHNQL---Q   90 (290)
T ss_dssp             CTTSCCSSCCS-CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECCSSCC---S
T ss_pred             CCCCCCCcCCC-CCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEECCCCcC---C
Confidence            34566777773 3458899999999999887643 3 89999999999999987665  37899999999999999   7


Q ss_pred             CCchhhhccccCcEEeccCCcCCCCc--ccccCCcCCcEEEcCCCCCcccccc-ccCCCccCEEeccCCCCCCcCchhhh
Q 036269           99 SLPSSLSFLINLRTLSLHDCQHFGDL--SLIGELSLLEILDLSESDVSEIPVS-FGRLGHLRLLDLTDCYNLELIPRGVL  175 (623)
Q Consensus        99 ~lp~~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~l~~~~~  175 (623)
                      .+|..+..+++|++|++++|. ++.+  ..+.++++|++|++++|.++.+|.. +..+++|+.|++++ +.++.+|.+++
T Consensus        91 ~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~  168 (290)
T 1p9a_G           91 SLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN-NNLTELPAGLL  168 (290)
T ss_dssp             SCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT-SCCSCCCTTTT
T ss_pred             cCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC-CcCCccCHHHh
Confidence            889888999999999999999 8777  5689999999999999999988754 67999999999999 67788998878


Q ss_pred             hccccCcEEEecccccccccccccccccccccccccCCCCccEEEeecCCC
Q 036269          176 SRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEG  226 (623)
Q Consensus       176 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  226 (623)
                      .++++|+.|++++|.+            ..++..+....+|+.+++++|.+
T Consensus       169 ~~l~~L~~L~L~~N~l------------~~ip~~~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          169 NGLENLDTLLLQENSL------------YTIPKGFFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             TTCTTCCEEECCSSCC------------CCCCTTTTTTCCCSEEECCSCCB
T ss_pred             cCcCCCCEEECCCCcC------------CccChhhcccccCCeEEeCCCCc
Confidence            8999999999999988            35677778888999999999875

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.74  E-value=3.9e-17  Score=155.36  Aligned_cols=175  Identities=23%  Similarity=0.332  Sum_probs=137.2

Q ss_pred             CCCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEec
Q 036269           36 EDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSL  115 (623)
Q Consensus        36 ~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l  115 (623)
                      ...++++++++.++.+|.... +.++.|++++|.+..++...|.++++|++|++++|.+.  +..+..+..+++|++|++
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ--TLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC--CCCTTTTTTCTTCCEEEC
T ss_pred             CCCeEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC--ccCHhHhccCCcCCEEEC
Confidence            456778888888888887654 67899999999988777766788999999999999884  344455788899999999


Q ss_pred             cCCcCCCCc--ccccCCcCCcEEEcCCCCCcccccc-ccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecccccc
Q 036269          116 HDCQHFGDL--SLIGELSLLEILDLSESDVSEIPVS-FGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCH  192 (623)
Q Consensus       116 ~~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~  192 (623)
                      ++|. +..+  ..+..+++|++|++++|.++.+|.. +..+++|++|++++ +.++.++.+.+..+++|++|++++|.+.
T Consensus        91 ~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~  168 (251)
T 3m19_A           91 ANNQ-LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT-NQLQSIPAGAFDKLTNLQTLSLSTNQLQ  168 (251)
T ss_dssp             TTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCCc-ccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcC-CcCCccCHHHcCcCcCCCEEECCCCcCC
Confidence            9988 7666  4678888999999999988877754 57888999999988 4667777655788888888888888773


Q ss_pred             cccccccccccccccccccCCCCccEEEeecCCC
Q 036269          193 WQFENEDDSRSNAKFIELGALSRLTSLHIDIPEG  226 (623)
Q Consensus       193 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  226 (623)
                                 ...+..+..+++|+.|++++|.+
T Consensus       169 -----------~~~~~~~~~l~~L~~L~l~~N~~  191 (251)
T 3m19_A          169 -----------SVPHGAFDRLGKLQTITLFGNQF  191 (251)
T ss_dssp             -----------CCCTTTTTTCTTCCEEECCSCCB
T ss_pred             -----------ccCHHHHhCCCCCCEEEeeCCce
Confidence                       22234567778888888887764

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.74  E-value=2.4e-17  Score=158.78  Aligned_cols=195  Identities=21%  Similarity=0.317  Sum_probs=159.8

Q ss_pred             CCCCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEe
Q 036269           35 FEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLS  114 (623)
Q Consensus        35 ~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~  114 (623)
                      +.++..+++..+.+..+.....+++|+.|++++|.+..++.  +..+++|++|++++|.+   ..++ .+..+++|++|+
T Consensus        18 ~~~l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~--l~~l~~L~~L~l~~n~l---~~~~-~l~~l~~L~~L~   91 (272)
T 3rfs_A           18 FAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKL---HDIS-ALKELTNLTYLI   91 (272)
T ss_dssp             HHHHHHHHHTCSCTTSEECHHHHTTCCEEECTTSCCCCCTT--GGGCTTCCEEECTTSCC---CCCG-GGTTCTTCCEEE
T ss_pred             HHHHHHHHhcCcccccccccccccceeeeeeCCCCcccccc--cccCCCCcEEECCCCCC---CCch-hhcCCCCCCEEE
Confidence            34455556666666666555578899999999999887765  68999999999999998   5554 688999999999


Q ss_pred             ccCCcCCCCc--ccccCCcCCcEEEcCCCCCcccccc-ccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccccc
Q 036269          115 LHDCQHFGDL--SLIGELSLLEILDLSESDVSEIPVS-FGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFC  191 (623)
Q Consensus       115 l~~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~  191 (623)
                      +++|. +..+  ..++++++|++|++++|.++.+|.. ++.+++|++|++++| .++.++...+..+++|+.|++++|.+
T Consensus        92 L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l  169 (272)
T 3rfs_A           92 LTGNQ-LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQL  169 (272)
T ss_dssp             CTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCCc-cCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCc
Confidence            99998 8776  4478999999999999999977654 789999999999995 66778777678999999999999987


Q ss_pred             ccccccccccccccccccccCCCCccEEEeecCCCccCCCc--ccccCccEEEEEeCCC
Q 036269          192 HWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSD--MSFQNLTSFSITIGGP  248 (623)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~  248 (623)
                      .           ...+..++.+++|+.|++++|.+..++..  ..+++|+.|++++++.
T Consensus       170 ~-----------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  217 (272)
T 3rfs_A          170 Q-----------SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW  217 (272)
T ss_dssp             C-----------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             C-----------ccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc
Confidence            3           23334468899999999999998877764  6789999999988863

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.74  E-value=3.7e-17  Score=158.07  Aligned_cols=194  Identities=21%  Similarity=0.252  Sum_probs=154.3

Q ss_pred             EEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCc-hhhhccccCcEEeccCC
Q 036269           40 GISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLP-SSLSFLINLRTLSLHDC  118 (623)
Q Consensus        40 ~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~  118 (623)
                      .++..+..+..+|..+. +++++|++++|.+..++...|.++++|++|++++|.+   ..++ ..+..+++|++|++++|
T Consensus        11 ~~~c~~~~l~~ip~~l~-~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l---~~~~~~~~~~l~~L~~L~L~~n   86 (276)
T 2z62_A           11 TYQCMELNFYKIPDNLP-FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI---QTIEDGAYQSLSHLSTLILTGN   86 (276)
T ss_dssp             EEECTTSCCSSCCSSSC-TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCC---CEECTTTTTTCTTCCEEECTTC
T ss_pred             eEEecCCCccccCCCCC-CCccEEECCCCcccccCHhHhccccCCcEEECCCCcC---CccCHHHccCCcCCCEEECCCC
Confidence            45566667778887653 5799999999999977776679999999999999999   4544 47889999999999999


Q ss_pred             cCCCCc--ccccCCcCCcEEEcCCCCCccccc-cccCCCccCEEeccCCCCCCc--CchhhhhccccCcEEEeccccccc
Q 036269          119 QHFGDL--SLIGELSLLEILDLSESDVSEIPV-SFGRLGHLRLLDLTDCYNLEL--IPRGVLSRLRKLEELYMSKTFCHW  193 (623)
Q Consensus       119 ~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~~--l~~~~~~~l~~L~~L~l~~~~~~~  193 (623)
                      . +..+  ..+.++++|++|++++|.+..++. .++++++|++|++++| .++.  +|.. +.++++|++|++++|.+..
T Consensus        87 ~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~  163 (276)
T 2z62_A           87 P-IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY-FSNLTNLEHLDLSSNKIQS  163 (276)
T ss_dssp             C-CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGG-GGGCTTCCEEECCSSCCCE
T ss_pred             c-cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCC-ccceecCchh-hccCCCCCEEECCCCCCCc
Confidence            8 8666  568999999999999999997764 6899999999999995 4554  5654 8999999999999998732


Q ss_pred             ccccccccccccccccccCCCCcc----EEEeecCCCccCCCc-ccccCccEEEEEeCCCCCC
Q 036269          194 QFENEDDSRSNAKFIELGALSRLT----SLHIDIPEGEIMPSD-MSFQNLTSFSITIGGPEEV  251 (623)
Q Consensus       194 ~~~~~~~~~~~~~~~~l~~l~~L~----~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~  251 (623)
                                 ..+..++.+++|+    .|++++|.+..++.. ....+|+.|+++++.....
T Consensus       164 -----------~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~  215 (276)
T 2z62_A          164 -----------IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSV  215 (276)
T ss_dssp             -----------ECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCC
T ss_pred             -----------CCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeec
Confidence                       2223344444444    899999998877765 4455899999988765443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.73  E-value=6.3e-18  Score=159.64  Aligned_cols=189  Identities=16%  Similarity=0.197  Sum_probs=155.7

Q ss_pred             ccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCc-ccccCCCch-hhhccccCcEEeccC-CcC
Q 036269           44 MFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSG-VFSLFSLPS-SLSFLINLRTLSLHD-CQH  120 (623)
Q Consensus        44 ~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~-~~~~~~lp~-~~~~l~~L~~L~l~~-~~~  120 (623)
                      ....++.+|. . .++++.|++++|.+..++...|.++++|++|++++|. +   +.++. .+..+++|++|++++ |. 
T Consensus        19 ~c~~l~~ip~-~-~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l---~~i~~~~f~~l~~L~~L~l~~~n~-   92 (239)
T 2xwt_C           19 TCKDIQRIPS-L-PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTL---QQLESHSFYNLSKVTHIEIRNTRN-   92 (239)
T ss_dssp             EECSCSSCCC-C-CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSC---CEECTTTEESCTTCCEEEEEEETT-
T ss_pred             EccCccccCC-C-CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCc---ceeCHhHcCCCcCCcEEECCCCCC-
Confidence            3444788887 3 3589999999999998888778999999999999997 7   56665 688999999999998 66 


Q ss_pred             CCCc--ccccCCcCCcEEEcCCCCCccccccccCCCccC---EEeccCCCCCCcCchhhhhccccCc-EEEecccccccc
Q 036269          121 FGDL--SLIGELSLLEILDLSESDVSEIPVSFGRLGHLR---LLDLTDCYNLELIPRGVLSRLRKLE-ELYMSKTFCHWQ  194 (623)
Q Consensus       121 l~~i--~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~---~L~l~~~~~~~~l~~~~~~~l~~L~-~L~l~~~~~~~~  194 (623)
                      ++.+  ..+.++++|++|++++|.++.+|. +..+++|+   +|++++|..++.++...+.++++|+ .|++++|.+.  
T Consensus        93 l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~--  169 (239)
T 2xwt_C           93 LTYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT--  169 (239)
T ss_dssp             CCEECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC--
T ss_pred             eeEcCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc--
Confidence            8777  468899999999999999999986 88889998   9999996478888887789999999 9999999873  


Q ss_pred             cccccccccccccccccCCCCccEEEeecCC-CccCCCc--ccc-cCccEEEEEeCCCCCC
Q 036269          195 FENEDDSRSNAKFIELGALSRLTSLHIDIPE-GEIMPSD--MSF-QNLTSFSITIGGPEEV  251 (623)
Q Consensus       195 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~--~~~-~~L~~L~l~~~~~~~~  251 (623)
                                .++......++|+.|++++|. +..++..  ..+ ++|+.|+++++.....
T Consensus       170 ----------~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l  220 (239)
T 2xwt_C          170 ----------SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL  220 (239)
T ss_dssp             ----------EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC
T ss_pred             ----------ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccC
Confidence                      333333334789999999995 8888665  567 8999999887664433

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.73  E-value=3.1e-17  Score=159.34  Aligned_cols=173  Identities=31%  Similarity=0.364  Sum_probs=118.0

Q ss_pred             CCCCCCCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCc
Q 036269           32 INTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLR  111 (623)
Q Consensus        32 ~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~  111 (623)
                      ...+++++.|++++|.++.++....+++|+.|++++|.+..+++  +.++++|++|++++|.+   ..+|. +..+++|+
T Consensus        42 ~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l---~~~~~-l~~l~~L~  115 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV---KDLSS-LKDLKKLK  115 (291)
T ss_dssp             HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC---CCGGG-GTTCTTCC
T ss_pred             hhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcC---CCChh-hccCCCCC
Confidence            34556677777777777777654467777777777777776665  57777777777777777   44443 66777777


Q ss_pred             EEeccCCcCCCCcccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccccc
Q 036269          112 TLSLHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFC  191 (623)
Q Consensus       112 ~L~l~~~~~l~~i~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~  191 (623)
                      +|++++|. +..++.+..+++|++|++++|.++.+ ..+.++++|++|++++ +.+..++.  +..+++|+.|++++|.+
T Consensus       116 ~L~L~~n~-i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~-N~l~~~~~--l~~l~~L~~L~L~~N~i  190 (291)
T 1h6t_A          116 SLSLEHNG-ISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLED-NQISDIVP--LAGLTKLQNLYLSKNHI  190 (291)
T ss_dssp             EEECTTSC-CCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCS-SCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             EEECCCCc-CCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccC-Cccccchh--hcCCCccCEEECCCCcC
Confidence            77777776 76666677777777777777777766 3567777777777777 34555554  66777777777777766


Q ss_pred             ccccccccccccccccccccCCCCccEEEeecCCCcc
Q 036269          192 HWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEI  228 (623)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  228 (623)
                      .            . ...+..+++|+.|++++|.+..
T Consensus       191 ~------------~-l~~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          191 S------------D-LRALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             C------------B-CGGGTTCTTCSEEEEEEEEEEC
T ss_pred             C------------C-ChhhccCCCCCEEECcCCcccC
Confidence            2            1 2236667777777777765433

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.73  E-value=3e-18  Score=168.74  Aligned_cols=173  Identities=20%  Similarity=0.255  Sum_probs=80.6

Q ss_pred             CCCcceEEccCCCCC-CCChhhH-hCCCcccEEEccCCcccccCCCchhhhcc-----ccCcEEeccCCcCCCCc--ccc
Q 036269           57 CPRLQALFLQKNDLL-DIPDPFF-QGMKDLKVLDLGGSGVFSLFSLPSSLSFL-----INLRTLSLHDCQHFGDL--SLI  127 (623)
Q Consensus        57 ~~~L~~L~l~~~~~~-~l~~~~~-~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l-----~~L~~L~l~~~~~l~~i--~~~  127 (623)
                      +++|++|++++|.+. .+|..+| ..+++|++|++++|.+   ..+|..+..+     ++|++|++++|. +..+  ..+
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l---~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~  169 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSW---ATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQV  169 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBC---SSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTC
T ss_pred             cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCC---cchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHh
Confidence            455555555555554 3443322 4555555555555555   3334444444     555555555555 4333  345


Q ss_pred             cCCcCCcEEEcCCCCCcc---ccccc--cCCCccCEEeccCCCCCC---cCchhhhhccccCcEEEeccccccccccccc
Q 036269          128 GELSLLEILDLSESDVSE---IPVSF--GRLGHLRLLDLTDCYNLE---LIPRGVLSRLRKLEELYMSKTFCHWQFENED  199 (623)
Q Consensus       128 ~~l~~L~~L~l~~~~i~~---lp~~i--~~l~~L~~L~l~~~~~~~---~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~  199 (623)
                      +++++|++|++++|.+..   +|..+  +++++|++|++++| .++   .++..++..+++|++|++++|.+.       
T Consensus       170 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-------  241 (312)
T 1wwl_A          170 RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNSLR-------  241 (312)
T ss_dssp             CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSCCC-------
T ss_pred             ccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCcCC-------
Confidence            555555555555555431   22223  45555555555552 233   222222334455555555555442       


Q ss_pred             ccccccc-cccccCCCCccEEEeecCCCccCCCcccccCccEEEEEeC
Q 036269          200 DSRSNAK-FIELGALSRLTSLHIDIPEGEIMPSDMSFQNLTSFSITIG  246 (623)
Q Consensus       200 ~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~  246 (623)
                          ... ...+..+++|+.|++++|.+..+|.... ++|+.|+++++
T Consensus       242 ----~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~-~~L~~L~Ls~N  284 (312)
T 1wwl_A          242 ----DAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP-AKLSVLDLSYN  284 (312)
T ss_dssp             ----SSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC-SEEEEEECCSS
T ss_pred             ----cccchhhhhhcCCCCEEECCCCccChhhhhcc-CCceEEECCCC
Confidence                111 1223334555555555555544444322 44455544444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.72  E-value=1.1e-17  Score=174.72  Aligned_cols=192  Identities=17%  Similarity=0.152  Sum_probs=157.1

Q ss_pred             CCCCCcEEEcccCCcccccc-cC-CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCc
Q 036269           34 TFEDLTGISLMFNDIHEVHE-GL-QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLR  111 (623)
Q Consensus        34 ~~~~l~~L~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~  111 (623)
                      .+++|+.|++++|.++.+++ .+ .+++|++|++++|.+...++  |..+++|++|++++|.+   ..+|.    .++|+
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l---~~l~~----~~~L~  102 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV---QELLV----GPSIE  102 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEE---EEEEE----CTTCC
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcC---CCCCC----CCCcC
Confidence            34689999999999988864 34 89999999999999986555  69999999999999999   55553    38999


Q ss_pred             EEeccCCcCCCCcccccCCcCCcEEEcCCCCCccc-cccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecccc
Q 036269          112 TLSLHDCQHFGDLSLIGELSLLEILDLSESDVSEI-PVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTF  190 (623)
Q Consensus       112 ~L~l~~~~~l~~i~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~  190 (623)
                      +|++++|. +..+.. ..+++|++|++++|.++.+ |..++.+++|++|++++|...+..|..+...+++|+.|++++|.
T Consensus       103 ~L~L~~N~-l~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~  180 (487)
T 3oja_A          103 TLHAANNN-ISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF  180 (487)
T ss_dssp             EEECCSSC-CCCEEE-CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred             EEECcCCc-CCCCCc-cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence            99999999 877632 3578999999999999966 56889999999999999554444555533489999999999998


Q ss_pred             cccccccccccccccccccccCCCCccEEEeecCCCccCCCc-ccccCccEEEEEeCCCC
Q 036269          191 CHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSD-MSFQNLTSFSITIGGPE  249 (623)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~  249 (623)
                      +.            .. .....+++|+.|++++|.+..++.. ..+++|+.|+++++...
T Consensus       181 l~------------~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~  227 (487)
T 3oja_A          181 IY------------DV-KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV  227 (487)
T ss_dssp             CC------------EE-ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC
T ss_pred             cc------------cc-cccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCc
Confidence            83            12 3345689999999999999888776 78899999999887644

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.70  E-value=3.6e-16  Score=148.66  Aligned_cols=166  Identities=25%  Similarity=0.399  Sum_probs=143.1

Q ss_pred             ecCCCCCCCCCCCCCCCCcEEEcccCCccccccc-C-CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccC
Q 036269           21 KAGVELKDWPSINTFEDLTGISLMFNDIHEVHEG-L-QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLF   98 (623)
Q Consensus        21 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~   98 (623)
                      ..+..+..+|. ...+.++.|++++|.++.+++. + .+++|++|++++|.+..+++..|.++++|++|++++|.+   .
T Consensus        21 ~~~~~l~~~p~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l---~   96 (251)
T 3m19_A           21 CQGKSLDSVPS-GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL---A   96 (251)
T ss_dssp             CTTCCCSSCCS-CCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC---C
T ss_pred             cCCCCccccCC-CCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcc---c
Confidence            34566777774 3447899999999999888764 3 899999999999999988887789999999999999999   5


Q ss_pred             CCc-hhhhccccCcEEeccCCcCCCCc--ccccCCcCCcEEEcCCCCCccccc-cccCCCccCEEeccCCCCCCcCchhh
Q 036269           99 SLP-SSLSFLINLRTLSLHDCQHFGDL--SLIGELSLLEILDLSESDVSEIPV-SFGRLGHLRLLDLTDCYNLELIPRGV  174 (623)
Q Consensus        99 ~lp-~~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~~l~~~~  174 (623)
                      .+| ..+..+++|++|++++|. ++.+  ..+..+++|++|++++|.++.+|. .++.+++|++|++++ +.+..++...
T Consensus        97 ~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~  174 (251)
T 3m19_A           97 SLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLST-NQLQSVPHGA  174 (251)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTT
T ss_pred             ccChhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCC-CcCCccCHHH
Confidence            555 557899999999999998 8777  347899999999999999998876 689999999999999 5677787766


Q ss_pred             hhccccCcEEEecccccc
Q 036269          175 LSRLRKLEELYMSKTFCH  192 (623)
Q Consensus       175 ~~~l~~L~~L~l~~~~~~  192 (623)
                      +..+++|+.|++++|.+.
T Consensus       175 ~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          175 FDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             TTTCTTCCEEECCSCCBC
T ss_pred             HhCCCCCCEEEeeCCcee
Confidence            899999999999999873

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.70  E-value=2e-16  Score=153.70  Aligned_cols=189  Identities=21%  Similarity=0.242  Sum_probs=159.5

Q ss_pred             CCCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEec
Q 036269           36 EDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSL  115 (623)
Q Consensus        36 ~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l  115 (623)
                      .++..+.+..+.++.+.....+++|+.|++++|.+..++.  +..+++|++|++++|.+   ..++. +..+++|++|++
T Consensus        24 ~~~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~--~~~l~~L~~L~L~~n~l---~~~~~-l~~l~~L~~L~l   97 (291)
T 1h6t_A           24 AETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKL---TDIKP-LANLKNLGWLFL   97 (291)
T ss_dssp             HHHHHHHTTCSCTTSEECHHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCC---CCCGG-GTTCTTCCEEEC
T ss_pred             HHHHHHHhcCCCcccccchhhcCcccEEEccCCCcccChh--HhcCCCCCEEEccCCcc---CCCcc-cccCCCCCEEEC
Confidence            3344455666666655544577899999999999998875  68999999999999999   56666 889999999999


Q ss_pred             cCCcCCCCcccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccccccccc
Q 036269          116 HDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQF  195 (623)
Q Consensus       116 ~~~~~l~~i~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~  195 (623)
                      ++|. +..++.+..+++|++|++++|.++.++ .+..+++|++|++++ +.++.++.  +..+++|++|++++|.+.   
T Consensus        98 ~~n~-l~~~~~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~-n~l~~~~~--l~~l~~L~~L~L~~N~l~---  169 (291)
T 1h6t_A           98 DENK-VKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGN-NKITDITV--LSRLTKLDTLSLEDNQIS---  169 (291)
T ss_dssp             CSSC-CCCGGGGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCS-SCCCCCGG--GGGCTTCSEEECCSSCCC---
T ss_pred             CCCc-CCCChhhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccC-CcCCcchh--hccCCCCCEEEccCCccc---
Confidence            9999 988888999999999999999999875 688999999999999 45666643  899999999999999873   


Q ss_pred             ccccccccccccccccCCCCccEEEeecCCCccCCCcccccCccEEEEEeCCC
Q 036269          196 ENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSDMSFQNLTSFSITIGGP  248 (623)
Q Consensus       196 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~  248 (623)
                               ..+. ++.+++|+.|++++|.+..++....+++|+.|+++++..
T Consensus       170 ---------~~~~-l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~i  212 (291)
T 1h6t_A          170 ---------DIVP-LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQEC  212 (291)
T ss_dssp             ---------CCGG-GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEEEE
T ss_pred             ---------cchh-hcCCCccCEEECCCCcCCCChhhccCCCCCEEECcCCcc
Confidence                     2222 889999999999999998887668899999999998763

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.70  E-value=6e-17  Score=159.39  Aligned_cols=196  Identities=17%  Similarity=0.108  Sum_probs=156.1

Q ss_pred             CCCCCcEEEcccCCcc-ccccc---CCCCCcceEEccCCCCCCCChhhHhCC-----CcccEEEccCCcccccCCCchhh
Q 036269           34 TFEDLTGISLMFNDIH-EVHEG---LQCPRLQALFLQKNDLLDIPDPFFQGM-----KDLKVLDLGGSGVFSLFSLPSSL  104 (623)
Q Consensus        34 ~~~~l~~L~l~~~~~~-~l~~~---~~~~~L~~L~l~~~~~~~l~~~~~~~l-----~~Lr~L~l~~~~~~~~~~lp~~~  104 (623)
                      .++++++|++++|.++ .+|..   ..+++|++|++++|.+..+|.. +..+     ++|++|++++|.+.  +..|..+
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~~~~~~L~~L~L~~N~l~--~~~~~~~  169 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAW-LAELQQWLKPGLKVLSIAQAHSL--NFSCEQV  169 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSH-HHHHHTTCCTTCCEEEEESCSCC--CCCTTTC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHH-HHHHHHhhcCCCcEEEeeCCCCc--cchHHHh
Confidence            3688999999999997 56664   3789999999999999977654 4666     99999999999994  3444788


Q ss_pred             hccccCcEEeccCCcCCCC----cccc--cCCcCCcEEEcCCCCCcccc----ccccCCCccCEEeccCCCCCCcCchhh
Q 036269          105 SFLINLRTLSLHDCQHFGD----LSLI--GELSLLEILDLSESDVSEIP----VSFGRLGHLRLLDLTDCYNLELIPRGV  174 (623)
Q Consensus       105 ~~l~~L~~L~l~~~~~l~~----i~~~--~~l~~L~~L~l~~~~i~~lp----~~i~~l~~L~~L~l~~~~~~~~l~~~~  174 (623)
                      ..+++|++|++++|. +..    +..+  +.+++|++|++++|.++.++    ..+..+++|++|++++|......|...
T Consensus       170 ~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  248 (312)
T 1wwl_A          170 RVFPALSTLDLSDNP-ELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS  248 (312)
T ss_dssp             CCCSSCCEEECCSCT-TCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSC
T ss_pred             ccCCCCCEEECCCCC-cCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhh
Confidence            999999999999998 532    2333  88999999999999998543    234578999999999955444343333


Q ss_pred             hhccccCcEEEecccccccccccccccccccccccccCCCCccEEEeecCCCccCCCcccccCccEEEEEeCC
Q 036269          175 LSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSDMSFQNLTSFSITIGG  247 (623)
Q Consensus       175 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~  247 (623)
                      +..+++|++|++++|.+.            .++..+.  ++|+.|++++|.+..+|....+++|+.|+++++.
T Consensus       249 ~~~l~~L~~L~Ls~N~l~------------~ip~~~~--~~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          249 CDWPSQLNSLNLSFTGLK------------QVPKGLP--AKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNP  307 (312)
T ss_dssp             CCCCTTCCEEECTTSCCS------------SCCSSCC--SEEEEEECCSSCCCSCCCTTTSCEEEEEECTTCT
T ss_pred             hhhcCCCCEEECCCCccC------------hhhhhcc--CCceEEECCCCCCCCChhHhhCCCCCEEeccCCC
Confidence            667899999999999883            4455555  7899999999998888766778888888887765

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.66  E-value=3e-16  Score=167.08  Aligned_cols=181  Identities=30%  Similarity=0.363  Sum_probs=146.5

Q ss_pred             CCCCCCCCCCCCCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhh
Q 036269           26 LKDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLS  105 (623)
Q Consensus        26 ~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~  105 (623)
                      +.+......++.|+.|++++|.+..++....+++|+.|+|++|.+..+++  +..+++|++|++++|.+   ..+| .+.
T Consensus        33 i~~~~~~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l---~~l~-~l~  106 (605)
T 1m9s_A           33 VTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKI---KDLS-SLK  106 (605)
T ss_dssp             TTSEECHHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCC---CCCT-TST
T ss_pred             cccccchhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCC---CCCh-hhc
Confidence            34444456678889999999998888765588999999999999887776  68899999999999988   5555 578


Q ss_pred             ccccCcEEeccCCcCCCCcccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEE
Q 036269          106 FLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELY  185 (623)
Q Consensus       106 ~l~~L~~L~l~~~~~l~~i~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~  185 (623)
                      .+++|++|++++|. +..++.+..+++|+.|++++|.++.+ ..+..+++|+.|++++| .+..+++  +..+++|+.|+
T Consensus       107 ~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~  181 (605)
T 1m9s_A          107 DLKKLKSLSLEHNG-ISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLY  181 (605)
T ss_dssp             TCTTCCEEECTTSC-CCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEE
T ss_pred             cCCCCCEEEecCCC-CCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCC-cCCCchh--hccCCCCCEEE
Confidence            88999999999998 88887888899999999999988877 47888999999999984 5555655  78889999999


Q ss_pred             ecccccccccccccccccccccccccCCCCccEEEeecCCCccCC
Q 036269          186 MSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMP  230 (623)
Q Consensus       186 l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  230 (623)
                      +++|.+.            . +..+..+++|+.|++++|.+...|
T Consensus       182 Ls~N~i~------------~-l~~l~~l~~L~~L~L~~N~l~~~p  213 (605)
T 1m9s_A          182 LSKNHIS------------D-LRALAGLKNLDVLELFSQECLNKP  213 (605)
T ss_dssp             CCSSCCC------------B-CGGGTTCTTCSEEECCSEEEECCC
T ss_pred             CcCCCCC------------C-ChHHccCCCCCEEEccCCcCcCCc
Confidence            9998772            2 245788889999999988765444

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.66  E-value=4.1e-16  Score=156.01  Aligned_cols=193  Identities=18%  Similarity=0.162  Sum_probs=126.9

Q ss_pred             cEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCch-hhhccccCcEEec-c
Q 036269           39 TGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPS-SLSFLINLRTLSL-H  116 (623)
Q Consensus        39 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~-~~~~l~~L~~L~l-~  116 (623)
                      +.++.+++.++++|..+ .++++.|++++|.+..++..+|+++++|++|++++|.+.  +.+|. .|.++++++.+.. .
T Consensus        12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~--~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL--EVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTC--CEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCC--CccChhHhhcchhhhhhhccc
Confidence            45666777777777655 256788888888888777776788888888888888764  44543 4567777665444 4


Q ss_pred             CCcCCCCc--ccccCCcCCcEEEcCCCCCccccc-cccCCCccCEEeccCCCCCCcCchhhhhccc-cCcEEEecccccc
Q 036269          117 DCQHFGDL--SLIGELSLLEILDLSESDVSEIPV-SFGRLGHLRLLDLTDCYNLELIPRGVLSRLR-KLEELYMSKTFCH  192 (623)
Q Consensus       117 ~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~-~L~~L~l~~~~~~  192 (623)
                      +|. +..+  ..+..+++|++|++++|.+..+|. .+....++..+++.+++.+..++...+..+. .++.|++++|.+ 
T Consensus        89 ~N~-l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i-  166 (350)
T 4ay9_X           89 ANN-LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI-  166 (350)
T ss_dssp             ETT-CCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC-
T ss_pred             CCc-ccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc-
Confidence            444 6665  457778888888888888776653 3445666777777776777777765455543 577777777776 


Q ss_pred             cccccccccccccccccccCCCCccEEEeec-CCCccCCCc--ccccCccEEEEEeCC
Q 036269          193 WQFENEDDSRSNAKFIELGALSRLTSLHIDI-PEGEIMPSD--MSFQNLTSFSITIGG  247 (623)
Q Consensus       193 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~--~~~~~L~~L~l~~~~  247 (623)
                                 ..++.......+|+.+++.+ |.++.++..  ..+++|+.|+++++.
T Consensus       167 -----------~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~  213 (350)
T 4ay9_X          167 -----------QEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR  213 (350)
T ss_dssp             -----------CEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC
T ss_pred             -----------cCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC
Confidence                       23444444555677777764 456666654  455566666655544

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.65  E-value=1.2e-16  Score=159.48  Aligned_cols=122  Identities=19%  Similarity=0.196  Sum_probs=61.8

Q ss_pred             cceEEccCCCCCCCChhhHhCC--CcccEEEccCCcccccCCCchhhhccccCcEEeccCCcCCCC--c-ccccCCcCCc
Q 036269           60 LQALFLQKNDLLDIPDPFFQGM--KDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGD--L-SLIGELSLLE  134 (623)
Q Consensus        60 L~~L~l~~~~~~~l~~~~~~~l--~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~--i-~~~~~l~~L~  134 (623)
                      ++.++++++.+.   +..+..+  +.+++|+++++.+   ...+..+..+++|++|++++|. +..  + ..+..+++|+
T Consensus        49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l---~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~  121 (336)
T 2ast_B           49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFM---DQPLAEHFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQ  121 (336)
T ss_dssp             SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEE---CSCCCSCCCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCS
T ss_pred             heeeccccccCC---HHHHHhhhhccceEEEcCCccc---cccchhhccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCC
Confidence            455555555433   2223444  5566666666555   2333334455566666666555 432  2 3445555556


Q ss_pred             EEEcCCCCCc-cccccccCCCccCEEeccCCCCCCc--CchhhhhccccCcEEEeccc
Q 036269          135 ILDLSESDVS-EIPVSFGRLGHLRLLDLTDCYNLEL--IPRGVLSRLRKLEELYMSKT  189 (623)
Q Consensus       135 ~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~~~~~~~--l~~~~~~~l~~L~~L~l~~~  189 (623)
                      +|++++|.++ ..|..++++++|++|++++|..++.  ++. .+.++++|++|++++|
T Consensus       122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~-~~~~~~~L~~L~l~~~  178 (336)
T 2ast_B          122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT-LLSSCSRLDELNLSWC  178 (336)
T ss_dssp             EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHH-HHHHCTTCCEEECCCC
T ss_pred             EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHH-HHhcCCCCCEEcCCCC
Confidence            6665555554 3444555556666666665433332  232 2455555555555555

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.65  E-value=6.7e-16  Score=140.77  Aligned_cols=150  Identities=19%  Similarity=0.207  Sum_probs=96.9

Q ss_pred             CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCCcCCCC--cccccCCcCC
Q 036269           56 QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGD--LSLIGELSLL  133 (623)
Q Consensus        56 ~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~--i~~~~~l~~L  133 (623)
                      .+++|+.|++++|.+.+++.  +..+++|++|++++|.+   ..+ ..+..+++|++|++++|. +..  +..++.+++|
T Consensus        42 ~l~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~l~~n~~---~~~-~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L  114 (197)
T 4ezg_A           42 QMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHA---TNY-NPISGLSNLERLRIMGKD-VTSDKIPNLSGLTSL  114 (197)
T ss_dssp             HHHTCCEEEEESSCCSCCTT--GGGCTTCSEEEEESCCC---SCC-GGGTTCTTCCEEEEECTT-CBGGGSCCCTTCTTC
T ss_pred             hcCCccEEeccCCCccChHH--HhcCCCCCEEEccCCCC---Ccc-hhhhcCCCCCEEEeECCc-cCcccChhhcCCCCC
Confidence            45667777777777666663  46677777777777755   333 356667777777777766 644  3566677777


Q ss_pred             cEEEcCCCCCc-cccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecccccccccccccccccccccccccC
Q 036269          134 EILDLSESDVS-EIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGA  212 (623)
Q Consensus       134 ~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~  212 (623)
                      ++|++++|.++ ..|..++++++|++|++++|..++.++.  +..+++|+.|++++|.+.            . ...+..
T Consensus       115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~------------~-~~~l~~  179 (197)
T 4ezg_A          115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVH------------D-YRGIED  179 (197)
T ss_dssp             CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCC------------C-CTTGGG
T ss_pred             CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCc------------C-hHHhcc
Confidence            77777777776 3556677777777777777554666663  677777777777777662            1 225666


Q ss_pred             CCCccEEEeecCCCc
Q 036269          213 LSRLTSLHIDIPEGE  227 (623)
Q Consensus       213 l~~L~~L~l~~~~~~  227 (623)
                      +++|+.|++++|.++
T Consensus       180 l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          180 FPKLNQLYAFSQTIG  194 (197)
T ss_dssp             CSSCCEEEECBC---
T ss_pred             CCCCCEEEeeCcccC
Confidence            777777777777653

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.65  E-value=3e-16  Score=149.87  Aligned_cols=171  Identities=19%  Similarity=0.192  Sum_probs=127.1

Q ss_pred             CCCCCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEE
Q 036269           34 TFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTL  113 (623)
Q Consensus        34 ~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L  113 (623)
                      .+.++..++++.+.+++++....+++|+.|++++|.+..++.  +..+++|++|++++|.+   ..++. +..+++|++|
T Consensus        17 ~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~L~~N~i---~~~~~-l~~l~~L~~L   90 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHNQI---SDLSP-LKDLTKLEEL   90 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCTT--GGGCTTCCEEECCSSCC---CCCGG-GTTCSSCCEE
T ss_pred             HHHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccchH--HhhCCCCCEEECCCCcc---CCChh-hccCCCCCEE
Confidence            445566677777777777744477888888888888877763  57888888888888888   55665 7788888888


Q ss_pred             eccCCcCCCCcccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccccccc
Q 036269          114 SLHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHW  193 (623)
Q Consensus       114 ~l~~~~~l~~i~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~  193 (623)
                      ++++|. ++.++.+.. ++|++|++++|.++.++ .+.++++|++|++++ +.++.++.  +..+++|+.|++++|.+. 
T Consensus        91 ~L~~N~-l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~-N~i~~~~~--l~~l~~L~~L~L~~N~i~-  163 (263)
T 1xeu_A           91 SVNRNR-LKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRN-NKLKSIVM--LGFLSKLEVLDLHGNEIT-  163 (263)
T ss_dssp             ECCSSC-CSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTT-SCCCBCGG--GGGCTTCCEEECTTSCCC-
T ss_pred             ECCCCc-cCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCC-CcCCCChH--HccCCCCCEEECCCCcCc-
Confidence            888887 777654444 78888888888888775 578888888888888 45666663  778888888888888772 


Q ss_pred             ccccccccccccccccccCCCCccEEEeecCCCccC
Q 036269          194 QFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIM  229 (623)
Q Consensus       194 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  229 (623)
                                 .. ..++.+++|+.|++++|.+...
T Consensus       164 -----------~~-~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          164 -----------NT-GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             -----------BC-TTSTTCCCCCEEEEEEEEEECC
T ss_pred             -----------ch-HHhccCCCCCEEeCCCCcccCC
Confidence                       11 5577778888888887765443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.64  E-value=3.1e-16  Score=154.22  Aligned_cols=217  Identities=14%  Similarity=0.095  Sum_probs=162.1

Q ss_pred             CCcEEEcccCCcc-----cccccCCCCCcceEEccCCCCC-CCChhhH-hCCCcccEEEccCCcccccCCCc----hhhh
Q 036269           37 DLTGISLMFNDIH-----EVHEGLQCPRLQALFLQKNDLL-DIPDPFF-QGMKDLKVLDLGGSGVFSLFSLP----SSLS  105 (623)
Q Consensus        37 ~l~~L~l~~~~~~-----~l~~~~~~~~L~~L~l~~~~~~-~l~~~~~-~~l~~Lr~L~l~~~~~~~~~~lp----~~~~  105 (623)
                      .++.+.+..+.++     .+.....+++|+.|++++|.+. ..+..++ ..+++|++|++++|.+.  +..+    ..+.
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~--~~~~~~~~~~~~  142 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWA--TGRSWLAELQQW  142 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCS--STTSSHHHHHTT
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccccc--chhhhhHHHHhh
Confidence            4677888877664     2333335577999999999988 4444433 78999999999999985  3333    2345


Q ss_pred             ccccCcEEeccCCcCCCCc--ccccCCcCCcEEEcCCCCCcc---cc--ccccCCCccCEEeccCCCCCCcCchh---hh
Q 036269          106 FLINLRTLSLHDCQHFGDL--SLIGELSLLEILDLSESDVSE---IP--VSFGRLGHLRLLDLTDCYNLELIPRG---VL  175 (623)
Q Consensus       106 ~l~~L~~L~l~~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~---lp--~~i~~l~~L~~L~l~~~~~~~~l~~~---~~  175 (623)
                      .+++|++|++++|. +..+  ..++.+++|++|++++|.+..   ++  ..++++++|++|++++| .++.++..   ++
T Consensus       143 ~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~  220 (310)
T 4glp_A          143 LKPGLKVLSIAQAH-SPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALA  220 (310)
T ss_dssp             BCSCCCEEEEECCS-SCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHH
T ss_pred             hccCCCEEEeeCCC-cchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHH
Confidence            78999999999998 7665  578899999999999998753   43  23478999999999995 55555542   35


Q ss_pred             hccccCcEEEecccccccccccccccccccccccccCC---CCccEEEeecCCCccCCCcccccCccEEEEEeCCCCCCC
Q 036269          176 SRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGAL---SRLTSLHIDIPEGEIMPSDMSFQNLTSFSITIGGPEEVP  252 (623)
Q Consensus       176 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l---~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  252 (623)
                      +.+++|++|++++|.+.           ...+..++.+   ++|+.|++++|.+..+|... .++|+.|++++|....++
T Consensus       221 ~~l~~L~~L~Ls~N~l~-----------~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~-~~~L~~L~Ls~N~l~~~~  288 (310)
T 4glp_A          221 AAGVQPHSLDLSHNSLR-----------ATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL-PAKLRVLDLSSNRLNRAP  288 (310)
T ss_dssp             HHTCCCSSEECTTSCCC-----------CCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC-CSCCSCEECCSCCCCSCC
T ss_pred             hcCCCCCEEECCCCCCC-----------ccchhhHHhccCcCcCCEEECCCCCCCchhhhh-cCCCCEEECCCCcCCCCc
Confidence            78899999999999883           2334555555   69999999999988887763 379999999998876553


Q ss_pred             cchhhhhhhhcccccccceeeecccc
Q 036269          253 LSDFIEVFSRKFKKRCSRAMGLSQDM  278 (623)
Q Consensus       253 ~~~~~~~~~~~~~~~~l~~l~l~~~~  278 (623)
                      .  +       ...+.++.+.+.++.
T Consensus       289 ~--~-------~~l~~L~~L~L~~N~  305 (310)
T 4glp_A          289 Q--P-------DELPEVDNLTLDGNP  305 (310)
T ss_dssp             C--T-------TSCCCCSCEECSSTT
T ss_pred             h--h-------hhCCCccEEECcCCC
Confidence            2  1       145788888887764

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.64  E-value=2.8e-16  Score=154.52  Aligned_cols=221  Identities=16%  Similarity=0.122  Sum_probs=154.9

Q ss_pred             CCCCcceEEccCCCCCC-----CChhhHhCCCcccEEEccCCcccccCCCchhh--hccccCcEEeccCCcCCCCc----
Q 036269           56 QCPRLQALFLQKNDLLD-----IPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSL--SFLINLRTLSLHDCQHFGDL----  124 (623)
Q Consensus        56 ~~~~L~~L~l~~~~~~~-----l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~--~~l~~L~~L~l~~~~~l~~i----  124 (623)
                      ....++.+.+.++.+..     +..  +..+++|++|++++|.+.  +..|..+  ..+++|++|++++|. +...    
T Consensus        62 ~~~~l~~l~l~~~~~~~~~~~~~~~--~~~~~~L~~L~l~~n~l~--~~~~~~~~~~~~~~L~~L~Ls~n~-i~~~~~~~  136 (310)
T 4glp_A           62 KALRVRRLTVGAAQVPAQLLVGALR--VLAYSRLKELTLEDLKIT--GTMPPLPLEATGLALSSLRLRNVS-WATGRSWL  136 (310)
T ss_dssp             SSCCCCEEEECSCCCBHHHHHHHHH--HHHHSCCCEEEEESCCCB--SCCCCCSSSCCCBCCSSCEEESCC-CSSTTSSH
T ss_pred             hhcceeEEEEeCCcCCHHHHHHHHH--hcccCceeEEEeeCCEec--cchhhhhhhccCCCCCEEEeeccc-ccchhhhh
Confidence            44557888888887651     111  234577999999999986  6677776  889999999999998 7542    


Q ss_pred             --ccccCCcCCcEEEcCCCCCcccc-ccccCCCccCEEeccCCCCCCc--Cchh-hhhccccCcEEEecccccccccccc
Q 036269          125 --SLIGELSLLEILDLSESDVSEIP-VSFGRLGHLRLLDLTDCYNLEL--IPRG-VLSRLRKLEELYMSKTFCHWQFENE  198 (623)
Q Consensus       125 --~~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~~--l~~~-~~~~l~~L~~L~l~~~~~~~~~~~~  198 (623)
                        ..+..+++|++|++++|.+..++ ..++.+++|++|++++|...+.  ++.. .+..+++|++|++++|.+...    
T Consensus       137 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l----  212 (310)
T 4glp_A          137 AELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP----  212 (310)
T ss_dssp             HHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH----
T ss_pred             HHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch----
Confidence              23457899999999999998665 6788999999999999654432  2221 236789999999999987310    


Q ss_pred             cccccccccc-cccCCCCccEEEeecCCCccC-CCc-cc---ccCccEEEEEeCCCCCCCcchhhhhhhhccccccccee
Q 036269          199 DDSRSNAKFI-ELGALSRLTSLHIDIPEGEIM-PSD-MS---FQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSRAM  272 (623)
Q Consensus       199 ~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~-~~~-~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  272 (623)
                           ...+. .++.+++|+.|++++|.+... |.. ..   +++|++|+++++.....+..          ..+.++.+
T Consensus       213 -----~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~----------~~~~L~~L  277 (310)
T 4glp_A          213 -----TGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKG----------LPAKLRVL  277 (310)
T ss_dssp             -----HHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSC----------CCSCCSCE
T ss_pred             -----HHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhh----------hcCCCCEE
Confidence                 11111 246788999999999998776 443 33   37999999998886655421          12678888


Q ss_pred             eeccccccccchHHHHHHHhhceeEeecccC
Q 036269          273 GLSQDMRISALPSWIKNLLLRSEILALGDVN  303 (623)
Q Consensus       273 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  303 (623)
                      ++..+... .+|. +. .+++|+.|+++++.
T Consensus       278 ~Ls~N~l~-~~~~-~~-~l~~L~~L~L~~N~  305 (310)
T 4glp_A          278 DLSSNRLN-RAPQ-PD-ELPEVDNLTLDGNP  305 (310)
T ss_dssp             ECCSCCCC-SCCC-TT-SCCCCSCEECSSTT
T ss_pred             ECCCCcCC-CCch-hh-hCCCccEEECcCCC
Confidence            88876543 3332 11 22778888887765

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.64  E-value=3.4e-16  Score=166.65  Aligned_cols=191  Identities=21%  Similarity=0.248  Sum_probs=162.3

Q ss_pred             CCCCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEe
Q 036269           35 FEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLS  114 (623)
Q Consensus        35 ~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~  114 (623)
                      +..+..+.+..+.+..+.....+++|+.|++++|.+..++.  +..+++|++|++++|.+   ..++. +..+++|+.|+
T Consensus        20 l~~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~Ls~N~l---~~~~~-l~~l~~L~~L~   93 (605)
T 1m9s_A           20 FAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKL---TDIKP-LTNLKNLGWLF   93 (605)
T ss_dssp             HHHHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCTT--GGGCTTCCEEECTTSCC---CCCGG-GGGCTTCCEEE
T ss_pred             HHHHHHHhccCCCcccccchhcCCCCCEEECcCCCCCCChH--HccCCCCCEEEeeCCCC---CCChh-hccCCCCCEEE
Confidence            34455666777777766655578899999999999998875  69999999999999999   56666 88999999999


Q ss_pred             ccCCcCCCCcccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecccccccc
Q 036269          115 LHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQ  194 (623)
Q Consensus       115 l~~~~~l~~i~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~  194 (623)
                      +++|. +..++.+..+++|++|++++|.+..++ .+..+++|+.|++++| .+..++.  +..+++|+.|++++|.+.  
T Consensus        94 Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l~~--l~~l~~L~~L~Ls~N~l~--  166 (605)
T 1m9s_A           94 LDENK-IKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNN-KITDITV--LSRLTKLDTLSLEDNQIS--  166 (605)
T ss_dssp             CCSSC-CCCCTTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSS-CCCCCGG--GGSCTTCSEEECCSSCCC--
T ss_pred             CcCCC-CCCChhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCC-ccCCchh--hcccCCCCEEECcCCcCC--
Confidence            99998 988888999999999999999999875 6889999999999994 5666643  899999999999999873  


Q ss_pred             cccccccccccccccccCCCCccEEEeecCCCccCCCcccccCccEEEEEeCCCC
Q 036269          195 FENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSDMSFQNLTSFSITIGGPE  249 (623)
Q Consensus       195 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~  249 (623)
                                ..+. +..+++|+.|++++|.+..++....+++|+.|+++.+...
T Consensus       167 ----------~~~~-l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~l~  210 (605)
T 1m9s_A          167 ----------DIVP-LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECL  210 (605)
T ss_dssp             ----------CCGG-GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEEEE
T ss_pred             ----------Cchh-hccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCCcCc
Confidence                      2222 8899999999999999888876688999999999877643

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.64  E-value=1.3e-15  Score=140.39  Aligned_cols=146  Identities=27%  Similarity=0.431  Sum_probs=80.4

Q ss_pred             EEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCch-hhhccccCcEEeccCC
Q 036269           40 GISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPS-SLSFLINLRTLSLHDC  118 (623)
Q Consensus        40 ~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~-~~~~l~~L~~L~l~~~  118 (623)
                      .++.+++.++.+|... .++|+.|++++|.+..++..+|.++++|++|++++|.+   ..+|. .+..+++|++|++++|
T Consensus        11 ~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l---~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           11 TVECYSQGRTSVPTGI-PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKL---QSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             EEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC---CCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEEecCCCccCCCCCC-CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCcc---CccChhhcCCCCCcCEEECCCC
Confidence            3445555555555433 23566666666666555555555666666666666655   33333 2455666666666666


Q ss_pred             cCCCCc--ccccCCcCCcEEEcCCCCCcccccc-ccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccccc
Q 036269          119 QHFGDL--SLIGELSLLEILDLSESDVSEIPVS-FGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFC  191 (623)
Q Consensus       119 ~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~  191 (623)
                      . +..+  ..+.++++|++|++++|.++.+|.. +.++++|++|++++ +.++.++...+..+++|+.|++++|.+
T Consensus        87 ~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~  160 (208)
T 2o6s_A           87 Q-LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ-NQLKSVPDGVFDRLTSLQYIWLHDNPW  160 (208)
T ss_dssp             C-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred             c-CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCC-CccceeCHHHhccCCCccEEEecCCCe
Confidence            5 5444  2345566666666666666555432 45566666666666 344445544455566666666665544

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.64  E-value=2.7e-16  Score=156.82  Aligned_cols=197  Identities=16%  Similarity=0.131  Sum_probs=132.1

Q ss_pred             CCCcEEEcccCCcccccccC-CC--CCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCC-CchhhhccccCc
Q 036269           36 EDLTGISLMFNDIHEVHEGL-QC--PRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFS-LPSSLSFLINLR  111 (623)
Q Consensus        36 ~~l~~L~l~~~~~~~l~~~~-~~--~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~-lp~~~~~l~~L~  111 (623)
                      ..+++++++++.+.  +... .+  ++++.|++++|.+...+..+ ..+++|++|++++|.+.  .. +|..+..+++|+
T Consensus        47 ~~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~-~~~~~L~~L~L~~~~l~--~~~~~~~~~~~~~L~  121 (336)
T 2ast_B           47 SLWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEH-FSPFRVQHMDLSNSVIE--VSTLHGILSQCSKLQ  121 (336)
T ss_dssp             TTSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSC-CCCBCCCEEECTTCEEC--HHHHHHHHTTBCCCS
T ss_pred             hhheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhh-ccCCCCCEEEccCCCcC--HHHHHHHHhhCCCCC
Confidence            34677888877664  2222 33  67888888888777444443 56788888888888774  33 666777888888


Q ss_pred             EEeccCCcCCCCc--ccccCCcCCcEEEcCCC-CCc--cccccccCCCccCEEeccCCCCCCc--Cchhhhhccc-cCcE
Q 036269          112 TLSLHDCQHFGDL--SLIGELSLLEILDLSES-DVS--EIPVSFGRLGHLRLLDLTDCYNLEL--IPRGVLSRLR-KLEE  183 (623)
Q Consensus       112 ~L~l~~~~~l~~i--~~~~~l~~L~~L~l~~~-~i~--~lp~~i~~l~~L~~L~l~~~~~~~~--l~~~~~~~l~-~L~~  183 (623)
                      +|++++|. +.+.  ..++.+++|++|++++| .++  .++..+.++++|++|++++|..++.  ++. .+..++ +|++
T Consensus       122 ~L~L~~~~-l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~l~~~L~~  199 (336)
T 2ast_B          122 NLSLEGLR-LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV-AVAHVSETITQ  199 (336)
T ss_dssp             EEECTTCB-CCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH-HHHHSCTTCCE
T ss_pred             EEeCcCcc-cCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH-HHHhcccCCCE
Confidence            88888887 6432  56777888888888888 566  3666677788888888888634543  343 367778 8888


Q ss_pred             EEecccccccccccccccccccccccccCCCCccEEEeecCC-Cc-cCCCc-ccccCccEEEEEeCC
Q 036269          184 LYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPE-GE-IMPSD-MSFQNLTSFSITIGG  247 (623)
Q Consensus       184 L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~-~~~~~-~~~~~L~~L~l~~~~  247 (623)
                      |++++|.....        ....+..++.+++|+.|++++|. +. ..+.. ..+++|+.|+++++.
T Consensus       200 L~l~~~~~~~~--------~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~  258 (336)
T 2ast_B          200 LNLSGYRKNLQ--------KSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY  258 (336)
T ss_dssp             EECCSCGGGSC--------HHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred             EEeCCCcccCC--------HHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence            88888742100        12334455677888888888877 33 22223 666778888877664

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.64  E-value=2.9e-15  Score=139.93  Aligned_cols=148  Identities=27%  Similarity=0.377  Sum_probs=123.1

Q ss_pred             CcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCch-hhhccccCcEEecc
Q 036269           38 LTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPS-SLSFLINLRTLSLH  116 (623)
Q Consensus        38 l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~-~~~~l~~L~~L~l~  116 (623)
                      .+.++.+++.++.+|.... ++|+.|++++|.+..+++..|.++++|++|++++|.+   ..+|. .+..+++|++|+++
T Consensus        21 ~~~v~c~~~~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l---~~i~~~~~~~l~~L~~L~Ls   96 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAGIP-TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL---GALPVGVFDSLTQLTVLDLG   96 (229)
T ss_dssp             TTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC---CCCCTTTTTTCTTCCEEECC
T ss_pred             CCEeEccCCCcCccCCCCC-CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC---CCcChhhcccCCCcCEEECC
Confidence            4568888888888887654 7899999999999877666678999999999999998   66664 46789999999999


Q ss_pred             CCcCCCCc--ccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccccc
Q 036269          117 DCQHFGDL--SLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFC  191 (623)
Q Consensus       117 ~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~  191 (623)
                      +|. +..+  ..+..+++|++|++++|.++.+|..+.++++|++|++++ +.+..++...+..+++|+.|++.+|.+
T Consensus        97 ~N~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~  171 (229)
T 3e6j_A           97 TNQ-LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYLFGNPW  171 (229)
T ss_dssp             SSC-CCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred             CCc-CCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence            998 8776  347888999999999999999988888999999999998 567777766678888888888888866

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.62  E-value=2.2e-15  Score=137.35  Aligned_cols=150  Identities=20%  Similarity=0.247  Sum_probs=112.2

Q ss_pred             CCCCCCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcE
Q 036269           33 NTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRT  112 (623)
Q Consensus        33 ~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~  112 (623)
                      ..+++++.|++++|.++.++....+++|++|++++|.+..++.  +..+++|++|++++|.+.  ...|..+..+++|++
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVT--SDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGG--GTTCTTCCEEEEECTTCB--GGGSCCCTTCTTCCE
T ss_pred             hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchh--hhcCCCCCEEEeECCccC--cccChhhcCCCCCCE
Confidence            4556788888888888877744477888888888887666543  578888888888888874  446667778888888


Q ss_pred             EeccCCcCCCC--cccccCCcCCcEEEcCCCC-CccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccc
Q 036269          113 LSLHDCQHFGD--LSLIGELSLLEILDLSESD-VSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKT  189 (623)
Q Consensus       113 L~l~~~~~l~~--i~~~~~l~~L~~L~l~~~~-i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~  189 (623)
                      |++++|. +.+  +..++.+++|++|++++|. ++.+| .+..+++|++|++++ +.+..++.  +..+++|++|++++|
T Consensus       117 L~Ls~n~-i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~-n~i~~~~~--l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          117 LDISHSA-HDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQF-DGVHDYRG--IEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             EECCSSB-CBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTT-BCCCCCTT--GGGCSSCCEEEECBC
T ss_pred             EEecCCc-cCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCC-CCCcChHH--hccCCCCCEEEeeCc
Confidence            8888887 755  3667788888888888887 77776 677888888888888 45556662  778888888888887


Q ss_pred             cc
Q 036269          190 FC  191 (623)
Q Consensus       190 ~~  191 (623)
                      .+
T Consensus       192 ~i  193 (197)
T 4ezg_A          192 TI  193 (197)
T ss_dssp             --
T ss_pred             cc
Confidence            65

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.62  E-value=2.8e-15  Score=138.02  Aligned_cols=168  Identities=22%  Similarity=0.287  Sum_probs=138.1

Q ss_pred             CCCCCCCCCCCCCCCCcEEEcccCCcccccccC--CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCC
Q 036269           23 GVELKDWPSINTFEDLTGISLMFNDIHEVHEGL--QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSL  100 (623)
Q Consensus        23 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~l  100 (623)
                      +.++..+| ....++++.|++++|.++.++...  .+++|++|++++|.+..++..+|.++++|++|++++|.+   ..+
T Consensus        16 ~~~l~~~p-~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l---~~~   91 (208)
T 2o6s_A           16 SQGRTSVP-TGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL---QSL   91 (208)
T ss_dssp             SSCCSSCC-SCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC---CCC
T ss_pred             CCCccCCC-CCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC---Ccc
Confidence            34566666 345678999999999999888754  899999999999999988888889999999999999999   556


Q ss_pred             ch-hhhccccCcEEeccCCcCCCCc--ccccCCcCCcEEEcCCCCCcccccc-ccCCCccCEEeccCCCCCCcCchhhhh
Q 036269          101 PS-SLSFLINLRTLSLHDCQHFGDL--SLIGELSLLEILDLSESDVSEIPVS-FGRLGHLRLLDLTDCYNLELIPRGVLS  176 (623)
Q Consensus       101 p~-~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~l~~~~~~  176 (623)
                      |. .+..+++|++|++++|. +..+  ..+..+++|++|++++|.++.+|.. +.++++|++|++++|..        .+
T Consensus        92 ~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~--------~~  162 (208)
T 2o6s_A           92 PNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW--------DC  162 (208)
T ss_dssp             CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB--------CC
T ss_pred             CHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe--------ec
Confidence            55 47899999999999998 8776  4578999999999999999988754 78999999999999633        34


Q ss_pred             ccccCcEEEecccccccccccccccccccccccccCCC
Q 036269          177 RLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALS  214 (623)
Q Consensus       177 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~  214 (623)
                      .+++|+.|+++.|.+.           ..++..++.++
T Consensus       163 ~~~~l~~L~~~~n~~~-----------g~ip~~~~~l~  189 (208)
T 2o6s_A          163 TCPGIRYLSEWINKHS-----------GVVRNSAGSVA  189 (208)
T ss_dssp             CTTTTHHHHHHHHHCT-----------TTBBCTTSSBC
T ss_pred             CCCCHHHHHHHHHhCC-----------ceeeccCcccc
Confidence            5567888888888773           45555565554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.62  E-value=2.8e-15  Score=139.06  Aligned_cols=148  Identities=24%  Similarity=0.341  Sum_probs=109.5

Q ss_pred             cEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCC
Q 036269           39 TGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDC  118 (623)
Q Consensus        39 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~  118 (623)
                      +.++.+++.++.+|.... ++++.|++++|.+..++...|..+++|++|++++|.+.  ...|..+..+++|++|++++|
T Consensus        14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~--~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS--ELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC-TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCC--EECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcCcCCCccC-cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCC--CcCHHHhhCCcCCCEEECCCC
Confidence            467777777877776553 57888888888888776666788888888888888874  334667778888888888888


Q ss_pred             cCCCCc--ccccCCcCCcEEEcCCCCCccc-cccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccccc
Q 036269          119 QHFGDL--SLIGELSLLEILDLSESDVSEI-PVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFC  191 (623)
Q Consensus       119 ~~l~~i--~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~  191 (623)
                      . +..+  ..+.++++|++|++++|.++.+ |..+..+++|++|++++ +.++.++.+.+..+++|+.|++++|.+
T Consensus        91 ~-l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B           91 K-ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD-NKLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             C-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             c-CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCC-CcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence            7 7666  3467788888888888887765 45677788888888887 456666655567777777777777755

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.62  E-value=4.8e-16  Score=158.06  Aligned_cols=204  Identities=16%  Similarity=0.107  Sum_probs=131.4

Q ss_pred             CCCCCCcEEEcccCCccc-----ccccC-CCCCcceEEccCCCCCC----CChhh------HhCCCcccEEEccCCcccc
Q 036269           33 NTFEDLTGISLMFNDIHE-----VHEGL-QCPRLQALFLQKNDLLD----IPDPF------FQGMKDLKVLDLGGSGVFS   96 (623)
Q Consensus        33 ~~~~~l~~L~l~~~~~~~-----l~~~~-~~~~L~~L~l~~~~~~~----l~~~~------~~~l~~Lr~L~l~~~~~~~   96 (623)
                      ..++++++|++++|.++.     ++..+ .+++|++|++++|.+..    +|..+      +..+++|++|++++|.+. 
T Consensus        29 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~-  107 (386)
T 2ca6_A           29 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG-  107 (386)
T ss_dssp             HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC-
T ss_pred             hcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC-
Confidence            345678888888887753     33333 67888888888875542    33332      367788888888888874 


Q ss_pred             cC----CCchhhhccccCcEEeccCCcCCCCc------ccccCC---------cCCcEEEcCCCCCc--ccc---ccccC
Q 036269           97 LF----SLPSSLSFLINLRTLSLHDCQHFGDL------SLIGEL---------SLLEILDLSESDVS--EIP---VSFGR  152 (623)
Q Consensus        97 ~~----~lp~~~~~l~~L~~L~l~~~~~l~~i------~~~~~l---------~~L~~L~l~~~~i~--~lp---~~i~~  152 (623)
                       .    .+|..+..+++|++|++++|. ++..      ..+..+         ++|++|++++|.++  .+|   ..+..
T Consensus       108 -~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~  185 (386)
T 2ca6_A          108 -PTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS  185 (386)
T ss_dssp             -TTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh
Confidence             3    266677788888888888887 6422      223333         78888888888775  444   45667


Q ss_pred             CCccCEEeccCCCCCCc-----CchhhhhccccCcEEEecccccccccccccccccccccccccCCCCccEEEeecCCCc
Q 036269          153 LGHLRLLDLTDCYNLEL-----IPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGE  227 (623)
Q Consensus       153 l~~L~~L~l~~~~~~~~-----l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  227 (623)
                      +++|++|++++| .++.     +....+..+++|+.|++++|.+....       ...++..+..+++|+.|++++|.+.
T Consensus       186 ~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g-------~~~l~~~l~~~~~L~~L~L~~n~i~  257 (386)
T 2ca6_A          186 HRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG-------SSALAIALKSWPNLRELGLNDCLLS  257 (386)
T ss_dssp             CTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH-------HHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred             CCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH-------HHHHHHHHccCCCcCEEECCCCCCc
Confidence            788888888885 3331     22212667788888888887762100       1234556677788888888887754


Q ss_pred             cC-----CCc---ccccCccEEEEEeCC
Q 036269          228 IM-----PSD---MSFQNLTSFSITIGG  247 (623)
Q Consensus       228 ~~-----~~~---~~~~~L~~L~l~~~~  247 (623)
                      ..     +..   ..+++|+.|++++|.
T Consensus       258 ~~~~~~l~~~l~~~~~~~L~~L~L~~n~  285 (386)
T 2ca6_A          258 ARGAAAVVDAFSKLENIGLQTLRLQYNE  285 (386)
T ss_dssp             HHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred             hhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence            33     222   125667777766554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.61  E-value=3.1e-15  Score=142.84  Aligned_cols=157  Identities=20%  Similarity=0.267  Sum_probs=136.7

Q ss_pred             CCCCCCCCCCCCCCCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchh
Q 036269           24 VELKDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSS  103 (623)
Q Consensus        24 ~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~  103 (623)
                      ..+.+++....+++++.|++++|.++.++....+++|+.|++++|.+..+++  +.++++|++|++++|.+   ..+|..
T Consensus        29 ~~i~~~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l---~~l~~~  103 (263)
T 1xeu_A           29 QSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRL---KNLNGI  103 (263)
T ss_dssp             SCTTSEECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCC---SCCTTC
T ss_pred             CCcccccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCcc---CCcCcc
Confidence            4455566667789999999999999999855589999999999999998887  69999999999999999   566653


Q ss_pred             hhccccCcEEeccCCcCCCCcccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcE
Q 036269          104 LSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEE  183 (623)
Q Consensus       104 ~~~l~~L~~L~l~~~~~l~~i~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~  183 (623)
                      . . ++|++|++++|. ++.++.++.+++|++|++++|.++.++ .+..+++|++|++++ +.+..++  .+..+++|+.
T Consensus       104 ~-~-~~L~~L~L~~N~-l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~-N~i~~~~--~l~~l~~L~~  176 (263)
T 1xeu_A          104 P-S-ACLSRLFLDNNE-LRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHG-NEITNTG--GLTRLKKVNW  176 (263)
T ss_dssp             C-C-SSCCEEECCSSC-CSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTT-SCCCBCT--TSTTCCCCCE
T ss_pred             c-c-CcccEEEccCCc-cCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCC-CcCcchH--HhccCCCCCE
Confidence            3 3 999999999998 988888999999999999999999887 789999999999999 4566663  3899999999


Q ss_pred             EEecccccc
Q 036269          184 LYMSKTFCH  192 (623)
Q Consensus       184 L~l~~~~~~  192 (623)
                      |++++|.+.
T Consensus       177 L~l~~N~~~  185 (263)
T 1xeu_A          177 IDLTGQKCV  185 (263)
T ss_dssp             EEEEEEEEE
T ss_pred             EeCCCCccc
Confidence            999999873

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.61  E-value=1.7e-15  Score=152.32  Aligned_cols=201  Identities=15%  Similarity=0.177  Sum_probs=132.4

Q ss_pred             CCCcEEEcccCCcccccc-----cC-CCC-CcceEEccCCCCCCCChhhHhCC-----CcccEEEccCCcccccCCCchh
Q 036269           36 EDLTGISLMFNDIHEVHE-----GL-QCP-RLQALFLQKNDLLDIPDPFFQGM-----KDLKVLDLGGSGVFSLFSLPSS  103 (623)
Q Consensus        36 ~~l~~L~l~~~~~~~l~~-----~~-~~~-~L~~L~l~~~~~~~l~~~~~~~l-----~~Lr~L~l~~~~~~~~~~lp~~  103 (623)
                      +++++|++++|.++..+.     .+ .++ +|+.|++++|.+.......+..+     ++|++|++++|.++  +..+..
T Consensus        22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~--~~~~~~   99 (362)
T 3goz_A           22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLS--YKSSDE   99 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG--GSCHHH
T ss_pred             CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCC--hHHHHH
Confidence            558888888888876653     23 566 78888888888875544444553     88888888888884  344443


Q ss_pred             hh----cc-ccCcEEeccCCcCCCCc--c----cccC-CcCCcEEEcCCCCCc-----cccccccCCC-ccCEEeccCCC
Q 036269          104 LS----FL-INLRTLSLHDCQHFGDL--S----LIGE-LSLLEILDLSESDVS-----EIPVSFGRLG-HLRLLDLTDCY  165 (623)
Q Consensus       104 ~~----~l-~~L~~L~l~~~~~l~~i--~----~~~~-l~~L~~L~l~~~~i~-----~lp~~i~~l~-~L~~L~l~~~~  165 (623)
                      +.    .+ ++|++|++++|. +++.  .    .+.. ..+|++|++++|.++     .++..+..++ +|++|++++| 
T Consensus       100 l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-  177 (362)
T 3goz_A          100 LVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN-  177 (362)
T ss_dssp             HHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS-
T ss_pred             HHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCC-
Confidence            33    33 788888888888 7544  2    2334 358888888888877     4455556665 8888888885 


Q ss_pred             CCCcCchhhh----hcc-ccCcEEEecccccccccccccccccccccccccC-CCCccEEEeecCCCccCCCc------c
Q 036269          166 NLELIPRGVL----SRL-RKLEELYMSKTFCHWQFENEDDSRSNAKFIELGA-LSRLTSLHIDIPEGEIMPSD------M  233 (623)
Q Consensus       166 ~~~~l~~~~~----~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~~~~~~~------~  233 (623)
                      .++......+    ... ++|++|++++|.+....       ...++..+.. .++|+.|++++|.+...+..      .
T Consensus       178 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~-------~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~  250 (362)
T 3goz_A          178 NLASKNCAELAKFLASIPASVTSLDLSANLLGLKS-------YAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKD  250 (362)
T ss_dssp             CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC-------HHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTT
T ss_pred             CCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhH-------HHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHh
Confidence            4443432213    334 58888888888773211       1123444544 35888888888887655431      4


Q ss_pred             cccCccEEEEEeCC
Q 036269          234 SFQNLTSFSITIGG  247 (623)
Q Consensus       234 ~~~~L~~L~l~~~~  247 (623)
                      .+++|+.|+++++.
T Consensus       251 ~l~~L~~L~L~~n~  264 (362)
T 3goz_A          251 SLKHLQTVYLDYDI  264 (362)
T ss_dssp             TTTTCSEEEEEHHH
T ss_pred             cCCCccEEEeccCC
Confidence            56778888887765

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.61  E-value=6.5e-16  Score=155.41  Aligned_cols=174  Identities=18%  Similarity=0.195  Sum_probs=107.2

Q ss_pred             EEcccCCccc-ccccCCC-CCcceEEccCCCCCCCCh----hhHhCCC-cccEEEccCCcccccCCCchhhhcc-----c
Q 036269           41 ISLMFNDIHE-VHEGLQC-PRLQALFLQKNDLLDIPD----PFFQGMK-DLKVLDLGGSGVFSLFSLPSSLSFL-----I  108 (623)
Q Consensus        41 L~l~~~~~~~-l~~~~~~-~~L~~L~l~~~~~~~l~~----~~~~~l~-~Lr~L~l~~~~~~~~~~lp~~~~~l-----~  108 (623)
                      ..++.+.++. +|..... ++|+.|++++|.+...+.    ..|.+++ +|++|++++|.+.  +..+..+..+     +
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~--~~~~~~l~~~l~~~~~   80 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLG--FKNSDELVQILAAIPA   80 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGG--GSCHHHHHHHHHTSCT
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCC--HHHHHHHHHHHhccCC
Confidence            4566677664 3444433 448888888888886665    5567788 8888888888885  4445556554     8


Q ss_pred             cCcEEeccCCcCCCCc--c----cccCC-cCCcEEEcCCCCCccccc-----cccC-CCccCEEeccCCCCCCcC-----
Q 036269          109 NLRTLSLHDCQHFGDL--S----LIGEL-SLLEILDLSESDVSEIPV-----SFGR-LGHLRLLDLTDCYNLELI-----  170 (623)
Q Consensus       109 ~L~~L~l~~~~~l~~i--~----~~~~l-~~L~~L~l~~~~i~~lp~-----~i~~-l~~L~~L~l~~~~~~~~l-----  170 (623)
                      +|++|++++|. +++.  .    .+..+ ++|++|++++|.++..+.     .+.. .++|++|++++| .++..     
T Consensus        81 ~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l  158 (362)
T 3goz_A           81 NVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDEL  158 (362)
T ss_dssp             TCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHH
T ss_pred             CccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHH
Confidence            88888888887 6443  2    24444 788888888888774432     2334 257888888874 33322     


Q ss_pred             chhhhhccc-cCcEEEecccccccccccccccccccccccccCC-CCccEEEeecCCC
Q 036269          171 PRGVLSRLR-KLEELYMSKTFCHWQFENEDDSRSNAKFIELGAL-SRLTSLHIDIPEG  226 (623)
Q Consensus       171 ~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~  226 (623)
                      +.. +..++ +|++|++++|.+....       ...+...+... ++|+.|++++|.+
T Consensus       159 ~~~-l~~~~~~L~~L~Ls~n~l~~~~-------~~~l~~~l~~~~~~L~~L~Ls~N~i  208 (362)
T 3goz_A          159 IQI-LAAIPANVNSLNLRGNNLASKN-------CAELAKFLASIPASVTSLDLSANLL  208 (362)
T ss_dssp             HHH-HHTSCTTCCEEECTTSCGGGSC-------HHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred             HHH-HhcCCccccEeeecCCCCchhh-------HHHHHHHHHhCCCCCCEEECCCCCC
Confidence            221 33444 7777777777663111       01112233444 4677777766654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.61  E-value=4e-15  Score=148.87  Aligned_cols=224  Identities=10%  Similarity=0.110  Sum_probs=128.3

Q ss_pred             ccceeecccCcccccccccccCCCcCCCccEEEEeecCCcccccchhHHHhccccceEEEeccccceeeeeccceecccc
Q 036269          348 KLEWLMIVDNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEIERVNIAKE  427 (623)
Q Consensus       348 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~  427 (623)
                      ++++|+++++. ++.+..+.  .+.+++|+.|++++|...+ .++...+.+++++.++.+.++++++++.        +.
T Consensus        31 ~l~~L~Ls~N~-i~~i~~~~--f~~l~~L~~L~Ls~N~i~~-~i~~~~f~~L~~l~~~l~~~~N~l~~l~--------~~   98 (350)
T 4ay9_X           31 NAIELRFVLTK-LRVIQKGA--FSGFGDLEKIEISQNDVLE-VIEADVFSNLPKLHEIRIEKANNLLYIN--------PE   98 (350)
T ss_dssp             TCSEEEEESCC-CSEECTTS--STTCTTCCEEEEECCTTCC-EECTTSBCSCTTCCEEEEEEETTCCEEC--------TT
T ss_pred             CCCEEEccCCc-CCCcCHHH--HcCCCCCCEEECcCCCCCC-ccChhHhhcchhhhhhhcccCCcccccC--------ch
Confidence            45555555543 33221111  1245556666666543222 2343334455555555555556665553        33


Q ss_pred             ccccccCccEEecCCccchhhcccCCCcccccCCccEEEEEcCCCcceeccCcccCcc-cchhhhhhcccccccceeccc
Q 036269          428 ETELFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVFCDELRQVFPANLGKKA-AAEEMVLYRNRRDQIHIHATT  506 (623)
Q Consensus       428 ~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~L~~L~l~~C~~l~~~~~~~l~~~~-~L~~l~~~~~~~~~l~~~~~~  506 (623)
                      .+..+++|++|+++++ .++.+..  ........+..+++.++.++..+++..+.... .++.|++.+|+..        
T Consensus        99 ~f~~l~~L~~L~l~~n-~l~~~~~--~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~--------  167 (350)
T 4ay9_X           99 AFQNLPNLQYLLISNT-GIKHLPD--VHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ--------  167 (350)
T ss_dssp             SBCCCTTCCEEEEEEE-CCSSCCC--CTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC--------
T ss_pred             hhhhcccccccccccc-ccccCCc--hhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc--------
Confidence            4455666666666665 3443311  11223445566666666666666555555433 4556666665441        


Q ss_pred             cCCCCCCCCCCccEEEEecCCCcceecchhhhhccCCCCEEEEccCCchhhhhcCCCCcccCcCCCcceeecCcccceec
Q 036269          507 STSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSRCPTLQEIIMNDEGEVGLQGASTEKITFPSLFSIQL  586 (623)
Q Consensus       507 ~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l  586 (623)
                      ..+.+.....+|++|.+.+++.++.+++ ..+..+++|++|+++++. |++++               ...+..|++|.+
T Consensus       168 ~i~~~~f~~~~L~~l~l~~~n~l~~i~~-~~f~~l~~L~~LdLs~N~-l~~lp---------------~~~~~~L~~L~~  230 (350)
T 4ay9_X          168 EIHNSAFNGTQLDELNLSDNNNLEELPN-DVFHGASGPVILDISRTR-IHSLP---------------SYGLENLKKLRA  230 (350)
T ss_dssp             EECTTSSTTEEEEEEECTTCTTCCCCCT-TTTTTEECCSEEECTTSC-CCCCC---------------SSSCTTCCEEEC
T ss_pred             CCChhhccccchhHHhhccCCcccCCCH-HHhccCcccchhhcCCCC-cCccC---------------hhhhccchHhhh
Confidence            1223333456788888888888888754 456788888888888886 77774               345677888888


Q ss_pred             ccCcccceecCCCCcceeecCCccEEEecc
Q 036269          587 CLLDSLTCFCSSGSHATVEFLALEALQIID  616 (623)
Q Consensus       587 ~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~  616 (623)
                      .++.+++.++.     ...+++|+.+++.+
T Consensus       231 l~~~~l~~lP~-----l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          231 RSTYNLKKLPT-----LEKLVALMEASLTY  255 (350)
T ss_dssp             TTCTTCCCCCC-----TTTCCSCCEEECSC
T ss_pred             ccCCCcCcCCC-----chhCcChhhCcCCC
Confidence            88888888775     33367888887743

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.60  E-value=1e-14  Score=153.40  Aligned_cols=176  Identities=19%  Similarity=0.287  Sum_probs=142.4

Q ss_pred             CCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEecc
Q 036269           37 DLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLH  116 (623)
Q Consensus        37 ~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~  116 (623)
                      +++.|++++|.++.+|..+ .++|+.|++++|.+..+|    ..+++|++|++++|.+   ..+|. +..  +|++|+++
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l---~~ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP----ELPASLEYLDACDNRL---STLPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCC---SCCCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCC---CCcch-hhc--CCCEEECC
Confidence            7899999999998888765 378999999999999888    3478999999999998   56777 544  99999999


Q ss_pred             CCcCCCCcccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecccccccccc
Q 036269          117 DCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFE  196 (623)
Q Consensus       117 ~~~~l~~i~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~  196 (623)
                      +|. ++.++.  .+++|++|++++|.++.+|.   .+++|++|++++ +.++.+|.  +.  ++|+.|++++|.+.    
T Consensus       129 ~N~-l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~-N~L~~lp~--l~--~~L~~L~Ls~N~L~----  193 (571)
T 3cvr_A          129 NNQ-LTMLPE--LPALLEYINADNNQLTMLPE---LPTSLEVLSVRN-NQLTFLPE--LP--ESLEALDVSTNLLE----  193 (571)
T ss_dssp             SSC-CSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCS-SCCSCCCC--CC--TTCCEEECCSSCCS----
T ss_pred             CCc-CCCCCC--cCccccEEeCCCCccCcCCC---cCCCcCEEECCC-CCCCCcch--hh--CCCCEEECcCCCCC----
Confidence            998 877755  78899999999999998886   678999999999 45666886  44  89999999999873    


Q ss_pred             cccccccccccccccCCCCc-------cEEEeecCCCccCCCc-ccccCccEEEEEeCCCC
Q 036269          197 NEDDSRSNAKFIELGALSRL-------TSLHIDIPEGEIMPSD-MSFQNLTSFSITIGGPE  249 (623)
Q Consensus       197 ~~~~~~~~~~~~~l~~l~~L-------~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~  249 (623)
                              .++. +..  +|       +.|++++|.+..+|.. ..+++|+.|++++|...
T Consensus       194 --------~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~  243 (571)
T 3cvr_A          194 --------SLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLS  243 (571)
T ss_dssp             --------SCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCC
T ss_pred             --------chhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCC
Confidence                    3333 333  56       9999999998888886 66888988888877643

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.59  E-value=8.6e-15  Score=135.73  Aligned_cols=147  Identities=16%  Similarity=0.269  Sum_probs=107.4

Q ss_pred             cEEEcccCCcccccccCCCCCcceEEccCCCCCCC-ChhhHhCCCcccEEEccCCcccccCCCc-hhhhccccCcEEecc
Q 036269           39 TGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDI-PDPFFQGMKDLKVLDLGGSGVFSLFSLP-SSLSFLINLRTLSLH  116 (623)
Q Consensus        39 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~l~~Lr~L~l~~~~~~~~~~lp-~~~~~l~~L~~L~l~  116 (623)
                      +.++++++.++.+|... ...++.|++++|.+..+ +..+|.++++|++|++++|.+   ..++ ..+..+++|++|+++
T Consensus        14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i---~~i~~~~~~~l~~L~~L~Ls   89 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI---TDIEEGAFEGASGVNEILLT   89 (220)
T ss_dssp             TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCC---CEECTTTTTTCTTCCEEECC
T ss_pred             CEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcC---CEECHHHhCCCCCCCEEECC
Confidence            47788888888887654 24567888888888755 344567888888888888887   4444 467788888888888


Q ss_pred             CCcCCCCc--ccccCCcCCcEEEcCCCCCccc-cccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccccc
Q 036269          117 DCQHFGDL--SLIGELSLLEILDLSESDVSEI-PVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFC  191 (623)
Q Consensus       117 ~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~  191 (623)
                      +|. +..+  ..+..+++|++|++++|.++.+ |..+..+++|++|++++ +.++.+++..+..+++|+.|++++|.+
T Consensus        90 ~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A           90 SNR-LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYD-NQITTVAPGAFDTLHSLSTLNLLANPF  165 (220)
T ss_dssp             SSC-CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTT-SCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred             CCc-cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCC-CcCCEECHHHhcCCCCCCEEEecCcCC
Confidence            887 7665  4577788888888888888765 56677788888888887 455555444477777777777777765

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.59  E-value=9.5e-15  Score=146.71  Aligned_cols=147  Identities=22%  Similarity=0.263  Sum_probs=88.4

Q ss_pred             cEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHh-CCCcccEEEccCCcccccCCCc-hhhhccccCcEEecc
Q 036269           39 TGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQ-GMKDLKVLDLGGSGVFSLFSLP-SSLSFLINLRTLSLH  116 (623)
Q Consensus        39 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~-~l~~Lr~L~l~~~~~~~~~~lp-~~~~~l~~L~~L~l~  116 (623)
                      +.++.+++.++.+|..+. +.++.|++++|.+..++..+|. ++++|++|++++|.+   ..++ ..+..+++|++|+++
T Consensus        21 ~~l~c~~~~l~~iP~~~~-~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i---~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSLP-SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL---NFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCSSCCSSCC-TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCC---CEECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcCccCccCC-CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcC---CccChhhccCCCCCCEEECC
Confidence            456666666666665431 3466666666666655555555 666666666666666   3333 346666666666666


Q ss_pred             CCcCCCCc--ccccCCcCCcEEEcCCCCCccc-cccccCCCccCEEeccCCCCCCcCchhhh---hccccCcEEEecccc
Q 036269          117 DCQHFGDL--SLIGELSLLEILDLSESDVSEI-PVSFGRLGHLRLLDLTDCYNLELIPRGVL---SRLRKLEELYMSKTF  190 (623)
Q Consensus       117 ~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~~~~l~~~~~---~~l~~L~~L~l~~~~  190 (623)
                      +|. +..+  ..+..+++|++|++++|.+..+ |..+..+++|++|++++ +.+..+|..++   ..+++|+.|++++|.
T Consensus        97 ~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~~~~l~~L~~L~L~~N~  174 (361)
T 2xot_A           97 SNH-LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ-NQISRFPVELIKDGNKLPKLMLLDLSSNK  174 (361)
T ss_dssp             SSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred             CCc-CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCC-CcCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence            666 6554  3456666666666666666644 44566666666666666 45555665534   456666666666665


Q ss_pred             c
Q 036269          191 C  191 (623)
Q Consensus       191 ~  191 (623)
                      +
T Consensus       175 l  175 (361)
T 2xot_A          175 L  175 (361)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.57  E-value=6.5e-15  Score=147.93  Aligned_cols=163  Identities=25%  Similarity=0.329  Sum_probs=99.6

Q ss_pred             CCCCCCCCCCCCCCCCcEEEcccCCcccccccC---CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCC
Q 036269           23 GVELKDWPSINTFEDLTGISLMFNDIHEVHEGL---QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFS   99 (623)
Q Consensus        23 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~---~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~   99 (623)
                      +..+..+|. .....++.|++++|.++.++...   .+++|+.|++++|.+..++...|.++++|++|++++|.+   ..
T Consensus        27 ~~~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l---~~  102 (361)
T 2xot_A           27 KQQLPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL---HT  102 (361)
T ss_dssp             SSCCSSCCS-SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC---CE
T ss_pred             CCCcCccCc-cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcC---Cc
Confidence            344555553 33455667777777766665532   566677777777776665555556677777777777766   33


Q ss_pred             Cc-hhhhccccCcEEeccCCcCCCCc--ccccCCcCCcEEEcCCCCCccccccc----cCCCccCEEeccCCCCCCcCch
Q 036269          100 LP-SSLSFLINLRTLSLHDCQHFGDL--SLIGELSLLEILDLSESDVSEIPVSF----GRLGHLRLLDLTDCYNLELIPR  172 (623)
Q Consensus       100 lp-~~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp~~i----~~l~~L~~L~l~~~~~~~~l~~  172 (623)
                      ++ ..+..+++|++|++++|. +..+  ..+..+++|++|++++|.++.+|..+    ..+++|++|++++ +.+..+|.
T Consensus       103 ~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~  180 (361)
T 2xot_A          103 LDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSS-NKLKKLPL  180 (361)
T ss_dssp             ECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCS-SCCCCCCH
T ss_pred             CCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCC-CCCCccCH
Confidence            33 345666777777777766 6554  45666677777777777776666543    4566777777776 45556665


Q ss_pred             hhhhcccc--CcEEEeccccc
Q 036269          173 GVLSRLRK--LEELYMSKTFC  191 (623)
Q Consensus       173 ~~~~~l~~--L~~L~l~~~~~  191 (623)
                      ..+..++.  ++.|++.+|.+
T Consensus       181 ~~~~~l~~~~l~~l~l~~N~~  201 (361)
T 2xot_A          181 TDLQKLPAWVKNGLYLHNNPL  201 (361)
T ss_dssp             HHHHHSCHHHHTTEECCSSCE
T ss_pred             HHhhhccHhhcceEEecCCCc
Confidence            44555554  35566666544

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.55  E-value=7.6e-14  Score=146.84  Aligned_cols=175  Identities=18%  Similarity=0.171  Sum_probs=145.2

Q ss_pred             eeeecCCCCCCCCCCCCCCCCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCccccc
Q 036269           18 FLIKAGVELKDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSL   97 (623)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~   97 (623)
                      .....++.+..+|. ..+++++.|++++|.++.+|  ..+++|+.|++++|.+..+|. + .+  +|++|++++|.+   
T Consensus        63 ~L~Ls~n~L~~lp~-~l~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~-l-~~--~L~~L~Ls~N~l---  132 (571)
T 3cvr_A           63 ELQLNRLNLSSLPD-NLPPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE-L-PA--SLKHLDVDNNQL---  132 (571)
T ss_dssp             EEECCSSCCSCCCS-CCCTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC-C-CT--TCCEEECCSSCC---
T ss_pred             EEEeCCCCCCccCH-hHcCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch-h-hc--CCCEEECCCCcC---
Confidence            34444566777774 23588999999999999998  457899999999999998887 3 44  999999999999   


Q ss_pred             CCCchhhhccccCcEEeccCCcCCCCcccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhc
Q 036269           98 FSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSR  177 (623)
Q Consensus        98 ~~lp~~~~~l~~L~~L~l~~~~~l~~i~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~  177 (623)
                      ..+|.   .+++|++|++++|. ++.++.  .+++|++|++++|.++.+|. +.  ++|++|++++ +.++.+|.  +..
T Consensus       133 ~~lp~---~l~~L~~L~Ls~N~-l~~lp~--~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~-N~L~~lp~--~~~  200 (571)
T 3cvr_A          133 TMLPE---LPALLEYINADNNQ-LTMLPE--LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVST-NLLESLPA--VPV  200 (571)
T ss_dssp             SCCCC---CCTTCCEEECCSSC-CSCCCC--CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCS-SCCSSCCC--CC-
T ss_pred             CCCCC---cCccccEEeCCCCc-cCcCCC--cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcC-CCCCchhh--HHH
Confidence            56877   68999999999999 877754  67899999999999999998 66  9999999999 56778886  333


Q ss_pred             cccC-------cEEEecccccccccccccccccccccccccCCCCccEEEeecCCCcc
Q 036269          178 LRKL-------EELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEI  228 (623)
Q Consensus       178 l~~L-------~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  228 (623)
                        +|       +.|++++|.+            ..++..+..+++|+.|++++|.+..
T Consensus       201 --~L~~~~~~L~~L~Ls~N~l------------~~lp~~l~~l~~L~~L~L~~N~l~~  244 (571)
T 3cvr_A          201 --RNHHSEETEIFFRCRENRI------------THIPENILSLDPTCTIILEDNPLSS  244 (571)
T ss_dssp             ---------CCEEEECCSSCC------------CCCCGGGGGSCTTEEEECCSSSCCH
T ss_pred             --hhhcccccceEEecCCCcc------------eecCHHHhcCCCCCEEEeeCCcCCC
Confidence              66       9999999988            3567778889999999999998643

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.55  E-value=6.1e-15  Score=149.88  Aligned_cols=204  Identities=19%  Similarity=0.195  Sum_probs=153.2

Q ss_pred             CCCCCCCcEEEcccCCcccc----ccc--------CCCCCcceEEccCCCCCC-----CChhhHhCCCcccEEEccCCcc
Q 036269           32 INTFEDLTGISLMFNDIHEV----HEG--------LQCPRLQALFLQKNDLLD-----IPDPFFQGMKDLKVLDLGGSGV   94 (623)
Q Consensus        32 ~~~~~~l~~L~l~~~~~~~l----~~~--------~~~~~L~~L~l~~~~~~~-----l~~~~~~~l~~Lr~L~l~~~~~   94 (623)
                      +..+++|++|++++|.+..+    |..        ..+++|++|++++|.+..     ++. .+..+++|++|++++|.+
T Consensus        56 l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~-~l~~~~~L~~L~L~~n~l  134 (386)
T 2ca6_A           56 IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLID-FLSKHTPLEHLYLHNNGL  134 (386)
T ss_dssp             TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHH-HHHHCTTCCEEECCSSCC
T ss_pred             HHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHH-HHHhCCCCCEEECcCCCC
Confidence            34578999999999865533    322        267999999999999885     333 458999999999999998


Q ss_pred             cccCC----Cchhhhcc---------ccCcEEeccCCcCCC--Cc----ccccCCcCCcEEEcCCCCCc------ccccc
Q 036269           95 FSLFS----LPSSLSFL---------INLRTLSLHDCQHFG--DL----SLIGELSLLEILDLSESDVS------EIPVS  149 (623)
Q Consensus        95 ~~~~~----lp~~~~~l---------~~L~~L~l~~~~~l~--~i----~~~~~l~~L~~L~l~~~~i~------~lp~~  149 (623)
                      .  ..    ++..+..+         ++|++|++++|. ++  .+    ..+..+++|++|++++|.++      -.|..
T Consensus       135 ~--~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~  211 (386)
T 2ca6_A          135 G--PQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEG  211 (386)
T ss_dssp             H--HHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTT
T ss_pred             C--HHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC-CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHH
Confidence            4  22    33334445         899999999998 75  23    35678899999999999988      23448


Q ss_pred             ccCCCccCEEeccCCCCC----CcCchhhhhccccCcEEEecccccccccccccccccccccccc--cCCCCccEEEeec
Q 036269          150 FGRLGHLRLLDLTDCYNL----ELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIEL--GALSRLTSLHIDI  223 (623)
Q Consensus       150 i~~l~~L~~L~l~~~~~~----~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l--~~l~~L~~L~l~~  223 (623)
                      +.++++|++|++++|...    ..+|.. +..+++|++|++++|.+....       ...++..+  +.+++|+.|++++
T Consensus       212 l~~~~~L~~L~Ls~n~l~~~g~~~l~~~-l~~~~~L~~L~L~~n~i~~~~-------~~~l~~~l~~~~~~~L~~L~L~~  283 (386)
T 2ca6_A          212 LAYCQELKVLDLQDNTFTHLGSSALAIA-LKSWPNLRELGLNDCLLSARG-------AAAVVDAFSKLENIGLQTLRLQY  283 (386)
T ss_dssp             GGGCTTCCEEECCSSCCHHHHHHHHHHH-GGGCTTCCEEECTTCCCCHHH-------HHHHHHHHHTCSSCCCCEEECCS
T ss_pred             hhcCCCccEEECcCCCCCcHHHHHHHHH-HccCCCcCEEECCCCCCchhh-------HHHHHHHHhhccCCCeEEEECcC
Confidence            889999999999996532    456664 789999999999999873210       01234555  4489999999999


Q ss_pred             CCCcc-----CCCc--ccccCccEEEEEeCC
Q 036269          224 PEGEI-----MPSD--MSFQNLTSFSITIGG  247 (623)
Q Consensus       224 ~~~~~-----~~~~--~~~~~L~~L~l~~~~  247 (623)
                      |.+..     ++..  ..+++|+.|++++|.
T Consensus       284 n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          284 NEIELDAVRTLKTVIDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             SCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             CcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence            99766     5554  446888888877665

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.52  E-value=1.8e-13  Score=127.63  Aligned_cols=143  Identities=25%  Similarity=0.289  Sum_probs=122.8

Q ss_pred             cCCCCCCCCCCCCCCCCcEEEcccCCcccccc-cC-CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCC
Q 036269           22 AGVELKDWPSINTFEDLTGISLMFNDIHEVHE-GL-QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFS   99 (623)
Q Consensus        22 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~   99 (623)
                      .+..+..+|. ...++++.|++++|.++.+++ .+ .+++|+.|++++|.+..++..+|..+++|++|++++|.+   ..
T Consensus        27 ~~~~l~~ip~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l---~~  102 (229)
T 3e6j_A           27 RSKRHASVPA-GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL---TV  102 (229)
T ss_dssp             TTSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC---CC
T ss_pred             cCCCcCccCC-CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcC---Cc
Confidence            3466777774 455899999999999998854 34 899999999999999999888889999999999999999   56


Q ss_pred             Cch-hhhccccCcEEeccCCcCCCCc-ccccCCcCCcEEEcCCCCCcccc-ccccCCCccCEEeccCCCCCCc
Q 036269          100 LPS-SLSFLINLRTLSLHDCQHFGDL-SLIGELSLLEILDLSESDVSEIP-VSFGRLGHLRLLDLTDCYNLEL  169 (623)
Q Consensus       100 lp~-~~~~l~~L~~L~l~~~~~l~~i-~~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~~  169 (623)
                      +|. .+..+++|++|++++|. +..+ ..+..+++|++|++++|.++.+| ..+..+++|+.|++++|.....
T Consensus       103 l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A          103 LPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             CCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred             cChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence            654 46899999999999999 8887 67899999999999999999887 4588999999999999654433

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.52  E-value=8.4e-14  Score=129.01  Aligned_cols=147  Identities=15%  Similarity=0.153  Sum_probs=116.1

Q ss_pred             ceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCC-c-hhhhccccCcEEeccCCcCCCCc--ccccCCcCCcEE
Q 036269           61 QALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSL-P-SSLSFLINLRTLSLHDCQHFGDL--SLIGELSLLEIL  136 (623)
Q Consensus        61 ~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~l-p-~~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~L~~L  136 (623)
                      +.+++++|.+..+|..+   .+.+++|++++|.+   ..+ + ..+..+++|++|++++|. +..+  ..+.++++|++|
T Consensus        14 ~~l~~s~n~l~~iP~~~---~~~~~~L~L~~N~l---~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L   86 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHI---PQYTAELRLNNNEF---TVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEI   86 (220)
T ss_dssp             TEEECCSSCCSSCCSCC---CTTCSEEECCSSCC---CEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEE
T ss_pred             CEeEeCCCCcccCccCC---CCCCCEEEcCCCcC---CccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEE
Confidence            58899999988888754   45678999999998   454 3 347889999999999998 8776  468889999999


Q ss_pred             EcCCCCCccccc-cccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecccccccccccccccccccccccccCCCC
Q 036269          137 DLSESDVSEIPV-SFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSR  215 (623)
Q Consensus       137 ~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~  215 (623)
                      ++++|.++.+|. .+..+++|++|++++ +.+..+++..+..+++|++|++++|.+.           ...+..++.+++
T Consensus        87 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~-----------~~~~~~~~~l~~  154 (220)
T 2v70_A           87 LLTSNRLENVQHKMFKGLESLKTLMLRS-NRITCVGNDSFIGLSSVRLLSLYDNQIT-----------TVAPGAFDTLHS  154 (220)
T ss_dssp             ECCSSCCCCCCGGGGTTCSSCCEEECTT-SCCCCBCTTSSTTCTTCSEEECTTSCCC-----------CBCTTTTTTCTT
T ss_pred             ECCCCccCccCHhHhcCCcCCCEEECCC-CcCCeECHhHcCCCccCCEEECCCCcCC-----------EECHHHhcCCCC
Confidence            999999987764 488899999999998 4566665445888899999999888773           333566778888


Q ss_pred             ccEEEeecCCC
Q 036269          216 LTSLHIDIPEG  226 (623)
Q Consensus       216 L~~L~l~~~~~  226 (623)
                      |+.|++++|.+
T Consensus       155 L~~L~L~~N~l  165 (220)
T 2v70_A          155 LSTLNLLANPF  165 (220)
T ss_dssp             CCEEECCSCCE
T ss_pred             CCEEEecCcCC
Confidence            88888888764

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.52  E-value=7.1e-14  Score=129.51  Aligned_cols=147  Identities=20%  Similarity=0.264  Sum_probs=113.4

Q ss_pred             ceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCch-hhhccccCcEEeccCCcCCCCc--ccccCCcCCcEEE
Q 036269           61 QALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPS-SLSFLINLRTLSLHDCQHFGDL--SLIGELSLLEILD  137 (623)
Q Consensus        61 ~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~L~~L~  137 (623)
                      +.++++++.+..+|..+   .+.+++|++++|.+   ..++. .+..+++|++|++++|. +..+  ..+.++++|++|+
T Consensus        14 ~~v~c~~~~l~~iP~~l---~~~l~~L~l~~n~i---~~i~~~~~~~l~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~   86 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNL---PETITEIRLEQNTI---KVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLV   86 (220)
T ss_dssp             TEEECTTSCCSSCCSSC---CTTCCEEECCSSCC---CEECTTSSTTCTTCCEEECCSSC-CCEECTTTTTTCSSCCEEE
T ss_pred             CEEEcCCCCcCcCCCcc---CcCCCEEECCCCcC---CCcCHhHhhCCCCCCEEECCCCc-CCCcCHHHhhCCcCCCEEE
Confidence            57888888888888754   37889999999988   55554 67888899999999988 7666  5788888899999


Q ss_pred             cCCCCCcccccc-ccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecccccccccccccccccccccccccCCCCc
Q 036269          138 LSESDVSEIPVS-FGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRL  216 (623)
Q Consensus       138 l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L  216 (623)
                      +++|.++.+|.. +..+++|++|++++ +.+..++...+..+++|+.|++++|.+.           ...+..+..+++|
T Consensus        87 Ls~N~l~~l~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~-----------~~~~~~~~~l~~L  154 (220)
T 2v9t_B           87 LYGNKITELPKSLFEGLFSLQLLLLNA-NKINCLRVDAFQDLHNLNLLSLYDNKLQ-----------TIAKGTFSPLRAI  154 (220)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCS-----------CCCTTTTTTCTTC
T ss_pred             CCCCcCCccCHhHccCCCCCCEEECCC-CCCCEeCHHHcCCCCCCCEEECCCCcCC-----------EECHHHHhCCCCC
Confidence            999988888754 57888888998888 5566666555788888888888888773           2223346677788


Q ss_pred             cEEEeecCCC
Q 036269          217 TSLHIDIPEG  226 (623)
Q Consensus       217 ~~L~l~~~~~  226 (623)
                      +.|++++|.+
T Consensus       155 ~~L~L~~N~~  164 (220)
T 2v9t_B          155 QTMHLAQNPF  164 (220)
T ss_dssp             CEEECCSSCE
T ss_pred             CEEEeCCCCc
Confidence            8888877764

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.52  E-value=3.5e-16  Score=165.60  Aligned_cols=191  Identities=23%  Similarity=0.244  Sum_probs=131.0

Q ss_pred             CCCCCcEEEcccCCcccccccC-CCCCcceEEccCCC-------------CCCCChhhHhCCCcccEEE-ccCCcccccC
Q 036269           34 TFEDLTGISLMFNDIHEVHEGL-QCPRLQALFLQKND-------------LLDIPDPFFQGMKDLKVLD-LGGSGVFSLF   98 (623)
Q Consensus        34 ~~~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~-------------~~~l~~~~~~~l~~Lr~L~-l~~~~~~~~~   98 (623)
                      ..+.++.|+++.|.++.+|..+ .+++|+.|++++|.             ....++..+..+++|+.|+ ++.+.+   .
T Consensus       347 ~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~---~  423 (567)
T 1dce_A          347 TDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL---D  423 (567)
T ss_dssp             TTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH---H
T ss_pred             cCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc---c
Confidence            3466777888888877777776 77777777775553             2223333456777777777 555443   2


Q ss_pred             CCch------hhhc--cccCcEEeccCCcCCCCcccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcC
Q 036269           99 SLPS------SLSF--LINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELI  170 (623)
Q Consensus        99 ~lp~------~~~~--l~~L~~L~l~~~~~l~~i~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l  170 (623)
                      .++.      .+..  ...|++|++++|. ++.++.++.+++|++|++++|.++.+|..++.+++|++|++++ +.++.+
T Consensus       424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~-l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~-N~l~~l  501 (567)
T 1dce_A          424 DLRSKFLLENSVLKMEYADVRVLHLAHKD-LTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASD-NALENV  501 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCSEEECTTSC-CSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCS-SCCCCC
T ss_pred             hhhhhhhhcccccccCccCceEEEecCCC-CCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCC-CCCCCC
Confidence            2221      1111  1257888888887 7777558888888888888888888888888888888888888 456667


Q ss_pred             chhhhhccccCcEEEecccccccccccccccccccc-cccccCCCCccEEEeecCCCccCCCc-----ccccCccEEE
Q 036269          171 PRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAK-FIELGALSRLTSLHIDIPEGEIMPSD-----MSFQNLTSFS  242 (623)
Q Consensus       171 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~-----~~~~~L~~L~  242 (623)
                      | . ++.+++|+.|++++|.+.           ... +..++.+++|+.|++++|.+...++.     ..+++|+.|+
T Consensus       502 p-~-l~~l~~L~~L~Ls~N~l~-----------~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          502 D-G-VANLPRLQELLLCNNRLQ-----------QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             G-G-GTTCSSCCEEECCSSCCC-----------SSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             c-c-cCCCCCCcEEECCCCCCC-----------CCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence            7 3 788888888888888772           222 66778888888888888887666553     3356666664

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.50  E-value=7.6e-14  Score=123.55  Aligned_cols=131  Identities=23%  Similarity=0.249  Sum_probs=104.5

Q ss_pred             CCCcEEEcccCCcc--cccccC-CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcE
Q 036269           36 EDLTGISLMFNDIH--EVHEGL-QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRT  112 (623)
Q Consensus        36 ~~l~~L~l~~~~~~--~l~~~~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~  112 (623)
                      ++++.|++++|.++  .+|..+ .+++|+.|++++|.+..+  ..+..+++|++|++++|.+.  ..+|..+..+++|++
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~   99 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIF--GGLDMLAEKLPNLTH   99 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCC--SCCCHHHHHCTTCCE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCc--hHHHHHHhhCCCCCE
Confidence            77999999999887  788775 788999999999988876  23688999999999999884  337777777899999


Q ss_pred             EeccCCcCCCCc---ccccCCcCCcEEEcCCCCCccccc----cccCCCccCEEeccCCCCCCcCch
Q 036269          113 LSLHDCQHFGDL---SLIGELSLLEILDLSESDVSEIPV----SFGRLGHLRLLDLTDCYNLELIPR  172 (623)
Q Consensus       113 L~l~~~~~l~~i---~~~~~l~~L~~L~l~~~~i~~lp~----~i~~l~~L~~L~l~~~~~~~~l~~  172 (623)
                      |++++|. +..+   ..+..+++|++|++++|.++.+|.    .+..+++|++|++++| ....+|.
T Consensus       100 L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~  164 (168)
T 2ell_A          100 LNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR-EDQEAPD  164 (168)
T ss_dssp             EECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET-TSCBCCS
T ss_pred             EeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC-Chhhccc
Confidence            9999987 7664   567788888888888888887775    6778888888888874 4445553

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.48  E-value=1.2e-13  Score=119.48  Aligned_cols=122  Identities=24%  Similarity=0.214  Sum_probs=98.3

Q ss_pred             CCCcEEEcccCCcc--cccccC-CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcE
Q 036269           36 EDLTGISLMFNDIH--EVHEGL-QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRT  112 (623)
Q Consensus        36 ~~l~~L~l~~~~~~--~l~~~~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~  112 (623)
                      ++++.|++++|.++  .+|..+ .+++|+.|++++|.+..+  ..+.++++|++|++++|.+.  +.+|..+..+++|++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~--~~~~~~~~~l~~L~~   92 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVS--GGLEVLAEKCPNLTH   92 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCC--SCTHHHHHHCTTCCE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCccc--chHHHHhhhCCCCCE
Confidence            77899999999887  788765 788999999999988876  23688999999999999884  337777777889999


Q ss_pred             EeccCCcCCCCc---ccccCCcCCcEEEcCCCCCccccc----cccCCCccCEEecc
Q 036269          113 LSLHDCQHFGDL---SLIGELSLLEILDLSESDVSEIPV----SFGRLGHLRLLDLT  162 (623)
Q Consensus       113 L~l~~~~~l~~i---~~~~~l~~L~~L~l~~~~i~~lp~----~i~~l~~L~~L~l~  162 (623)
                      |++++|. ++++   ..++.+++|++|++++|.++.+|.    .+..+++|++|+++
T Consensus        93 L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           93 LNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             EECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             EECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            9999888 7664   567788888888888888877664    57777888887765

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.48  E-value=1.3e-13  Score=122.03  Aligned_cols=134  Identities=22%  Similarity=0.182  Sum_probs=68.2

Q ss_pred             CcccEEEccCCcccccCCCchhhhccccCcEEeccCCcCCCCcccccCCcCCcEEEcCCCCCcc-ccccccCCCccCEEe
Q 036269           82 KDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVSE-IPVSFGRLGHLRLLD  160 (623)
Q Consensus        82 ~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~i~~~~~l~~L~~L~l~~~~i~~-lp~~i~~l~~L~~L~  160 (623)
                      ++|++|++++|.+.. +.+|..+..+++|++|++++|. +..+..+..+++|++|++++|.++. +|..+.++++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~-~~i~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSND-GKIEGLTAEFVNLEFLSLINVG-LISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBT-TBCSSCCGGGGGCCEEEEESSC-CCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCCh-hhHHHHHHhCCCCCEEeCcCCC-CCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            445555555555410 1444444555555555555555 5444445555555555555555554 444444555555555


Q ss_pred             ccCCCCCCcCch-hhhhccccCcEEEeccccccccccccccccccccc----ccccCCCCccEEEeecCCCccCC
Q 036269          161 LTDCYNLELIPR-GVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKF----IELGALSRLTSLHIDIPEGEIMP  230 (623)
Q Consensus       161 l~~~~~~~~l~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~~~~  230 (623)
                      +++| .++.++. ..+..+++|++|++++|.+.            ..+    ..++.+++|+.|++.+|....+|
T Consensus       102 Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~------------~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  163 (168)
T 2ell_A          102 LSGN-KLKDISTLEPLKKLECLKSLDLFNCEVT------------NLNDYRESVFKLLPQLTYLDGYDREDQEAP  163 (168)
T ss_dssp             CBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGG------------TSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred             ccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCc------------chHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence            5553 3444431 22555555666666555542            111    24455566666666665554444

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.40  E-value=4e-13  Score=119.79  Aligned_cols=122  Identities=16%  Similarity=0.184  Sum_probs=60.9

Q ss_pred             CCCcEEEcccCCcccccccCCCC-CcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchh-hhccccCcEE
Q 036269           36 EDLTGISLMFNDIHEVHEGLQCP-RLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSS-LSFLINLRTL  113 (623)
Q Consensus        36 ~~l~~L~l~~~~~~~l~~~~~~~-~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~-~~~l~~L~~L  113 (623)
                      .+++.|++++|.++.++....+. +|+.|++++|.+..++.  |..+++|++|++++|.+   ..+|.. +..+++|++|
T Consensus        19 ~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l---~~~~~~~~~~l~~L~~L   93 (176)
T 1a9n_A           19 VRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLVNNNRI---CRIGEGLDQALPDLTEL   93 (176)
T ss_dssp             TSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECC--CCCCSSCCEEECCSSCC---CEECSCHHHHCTTCCEE
T ss_pred             CCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccc--cccCCCCCEEECCCCcc---cccCcchhhcCCCCCEE
Confidence            45555555555555554433322 55555555555554421  35555555555555555   334432 2455555555


Q ss_pred             eccCCcCCCCcc---cccCCcCCcEEEcCCCCCcccccc----ccCCCccCEEeccC
Q 036269          114 SLHDCQHFGDLS---LIGELSLLEILDLSESDVSEIPVS----FGRLGHLRLLDLTD  163 (623)
Q Consensus       114 ~l~~~~~l~~i~---~~~~l~~L~~L~l~~~~i~~lp~~----i~~l~~L~~L~l~~  163 (623)
                      ++++|. ++.++   .+..+++|++|++++|.+..+|..    +..+++|++|++++
T Consensus        94 ~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~  149 (176)
T 1a9n_A           94 ILTNNS-LVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQK  149 (176)
T ss_dssp             ECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEE
T ss_pred             ECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCc
Confidence            555555 44431   344455555555555555444432    44444444444444

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.40  E-value=1.7e-12  Score=117.43  Aligned_cols=129  Identities=20%  Similarity=0.248  Sum_probs=101.4

Q ss_pred             cEEEcccCCcccccccCCCCCcceEEccCCCCCCCChh-hHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccC
Q 036269           39 TGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDP-FFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHD  117 (623)
Q Consensus        39 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~-~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~  117 (623)
                      +.++++++.++.+|.... .+++.|++++|.+..++.. +|.++++|++|++++|.++  +..|..+..+++|++|++++
T Consensus        11 ~~l~~s~~~l~~ip~~~~-~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIP-LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT--GIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC-TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCC--CBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcCcCccCCC-CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCC--CcCHhHcCCcccCCEEECCC
Confidence            678888888888887652 3788999999988866653 4688999999999999884  44467788889999999999


Q ss_pred             CcCCCCc--ccccCCcCCcEEEcCCCCCccc-cccccCCCccCEEeccCCCCCCcCc
Q 036269          118 CQHFGDL--SLIGELSLLEILDLSESDVSEI-PVSFGRLGHLRLLDLTDCYNLELIP  171 (623)
Q Consensus       118 ~~~l~~i--~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~~~~l~  171 (623)
                      |. +..+  ..+..+++|++|++++|.++.+ |..+..+++|++|++++|......+
T Consensus        88 N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           88 NK-IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CC-CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             Cc-CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            88 7666  4578888899999998888854 6778888888888888865444444

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.40  E-value=2.1e-13  Score=121.62  Aligned_cols=131  Identities=16%  Similarity=0.153  Sum_probs=82.4

Q ss_pred             cCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCCcCCCCc-cc-ccCCc
Q 036269           54 GLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDL-SL-IGELS  131 (623)
Q Consensus        54 ~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~i-~~-~~~l~  131 (623)
                      ...+++|+.|++++|.+..++. +....++|++|++++|.+   ..+ ..+..+++|++|++++|. +..+ +. +..++
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l---~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~   88 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEI---RKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALP   88 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCC---CEE-CCCCCCSSCCEEECCSSC-CCEECSCHHHHCT
T ss_pred             cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCC---Ccc-cccccCCCCCEEECCCCc-ccccCcchhhcCC
Confidence            3356677777777777776643 222233777777777777   334 456667777777777776 6555 22 36677


Q ss_pred             CCcEEEcCCCCCccccc--cccCCCccCEEeccCCCCCCcCchh---hhhccccCcEEEeccccc
Q 036269          132 LLEILDLSESDVSEIPV--SFGRLGHLRLLDLTDCYNLELIPRG---VLSRLRKLEELYMSKTFC  191 (623)
Q Consensus       132 ~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~l~~~~~~~~l~~~---~~~~l~~L~~L~l~~~~~  191 (623)
                      +|++|++++|.++.+|.  .+..+++|++|++++| .+..+|..   ++..+++|+.|++++|..
T Consensus        89 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           89 DLTELILTNNSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             CCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence            77777777777766665  5666777777777763 34445542   356666666666666544

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.40  E-value=2.4e-12  Score=116.37  Aligned_cols=120  Identities=23%  Similarity=0.323  Sum_probs=62.3

Q ss_pred             cEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCC
Q 036269           39 TGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDC  118 (623)
Q Consensus        39 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~  118 (623)
                      +.++++++.++.+|... .++++.|++++|.+..+|.. |.++++|++|++++|.++  ...+..+..+++|++|++++|
T Consensus        13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i~~ip~~-~~~l~~L~~L~Ls~N~i~--~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQFTLVPKE-LSNYKHLTLIDLSNNRIS--TLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCSSCCSCC-CTTCCEEECCSSCCCSCCGG-GGGCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCCcCCCCC-CCCCCEEECCCCcCchhHHH-hhcccCCCEEECCCCcCC--EeCHhHccCCCCCCEEECCCC
Confidence            34555666665555443 13556666666665555532 355666666666666552  222234555555555555555


Q ss_pred             cCCCCc--ccccCCcCCcEEEcCCCCCccccc-cccCCCccCEEeccC
Q 036269          119 QHFGDL--SLIGELSLLEILDLSESDVSEIPV-SFGRLGHLRLLDLTD  163 (623)
Q Consensus       119 ~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~  163 (623)
                      . +..+  ..+.++++|++|++++|.++.+|. .+..+++|++|++++
T Consensus        89 ~-l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  135 (193)
T 2wfh_A           89 R-LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGA  135 (193)
T ss_dssp             C-CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCS
T ss_pred             c-cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCC
Confidence            5 5444  235555555555555555554443 244455555555554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.40  E-value=4.8e-13  Score=115.70  Aligned_cols=122  Identities=23%  Similarity=0.335  Sum_probs=72.6

Q ss_pred             CCcceEEccCCCCC--CCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCCcCCCC-c-ccccCCcCC
Q 036269           58 PRLQALFLQKNDLL--DIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGD-L-SLIGELSLL  133 (623)
Q Consensus        58 ~~L~~L~l~~~~~~--~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~-i-~~~~~l~~L  133 (623)
                      ++++.|++++|.+.  .+|.. +..+++|++|++++|.+   ..+ ..+..+++|++|++++|. +.. + ..++.+++|
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~l~~n~l---~~~-~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L   90 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGL-TDEFEELEFLSTINVGL---TSI-ANLPKLNKLKKLELSDNR-VSGGLEVLAEKCPNL   90 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSC-CTTCTTCCEEECTTSCC---CCC-TTCCCCTTCCEEECCSSC-CCSCTHHHHHHCTTC
T ss_pred             ccCeEEEccCCcCChhHHHHH-HhhcCCCcEEECcCCCC---CCc-hhhhcCCCCCEEECCCCc-ccchHHHHhhhCCCC
Confidence            55667777777665  45543 36666777777776666   333 445666666666666666 544 3 344456666


Q ss_pred             cEEEcCCCCCcccc--ccccCCCccCEEeccCCCCCCcCch---hhhhccccCcEEEe
Q 036269          134 EILDLSESDVSEIP--VSFGRLGHLRLLDLTDCYNLELIPR---GVLSRLRKLEELYM  186 (623)
Q Consensus       134 ~~L~l~~~~i~~lp--~~i~~l~~L~~L~l~~~~~~~~l~~---~~~~~l~~L~~L~l  186 (623)
                      ++|++++|.++.+|  ..++.+++|++|++++| .+..++.   ..+..+++|+.|++
T Consensus        91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A           91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETT
T ss_pred             CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccC
Confidence            66666666666543  55666666666666663 3444443   33555666666554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.38  E-value=1e-12  Score=143.62  Aligned_cols=150  Identities=22%  Similarity=0.276  Sum_probs=88.4

Q ss_pred             CCCcEEEcccCCcccccccC-CCCCcceEEc-----cCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhcccc
Q 036269           36 EDLTGISLMFNDIHEVHEGL-QCPRLQALFL-----QKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLIN  109 (623)
Q Consensus        36 ~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l-----~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~  109 (623)
                      ++++.+++..+.++..+... ....|+.+.+     ..|.+. +++..|..++.|++|++++|.+   ..+|..+..+++
T Consensus       173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l---~~l~~~~~~l~~  248 (727)
T 4b8c_D          173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQI---FNISANIFKYDF  248 (727)
T ss_dssp             --------------------------------------------------CCCCCCEEECTTSCC---SCCCGGGGGCCS
T ss_pred             CccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCC---CCCChhhcCCCC
Confidence            55778888887776655443 3333333333     223332 3445567888888888888888   677877778888


Q ss_pred             CcEEeccCCcCCCCc-ccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecc
Q 036269          110 LRTLSLHDCQHFGDL-SLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSK  188 (623)
Q Consensus       110 L~~L~l~~~~~l~~i-~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~  188 (623)
                      |++|++++|. +..+ ..++++++|++|+|++|.++.+|..++++++|++|++++ +.++.+|.. ++++++|++|++++
T Consensus       249 L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~-N~l~~lp~~-~~~l~~L~~L~L~~  325 (727)
T 4b8c_D          249 LTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFD-NMVTTLPWE-FGNLCNLQFLGVEG  325 (727)
T ss_dssp             CSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCS-SCCCCCCSS-TTSCTTCCCEECTT
T ss_pred             CCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCC-CCCCccChh-hhcCCCccEEeCCC
Confidence            8888888887 7766 567888888888888888888888888888888888888 456778876 78888888888888


Q ss_pred             cccc
Q 036269          189 TFCH  192 (623)
Q Consensus       189 ~~~~  192 (623)
                      |.+.
T Consensus       326 N~l~  329 (727)
T 4b8c_D          326 NPLE  329 (727)
T ss_dssp             SCCC
T ss_pred             CccC
Confidence            8774

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.37  E-value=4.8e-12  Score=114.38  Aligned_cols=123  Identities=24%  Similarity=0.356  Sum_probs=108.7

Q ss_pred             ceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCCcCCCCc--ccccCCcCCcEEEc
Q 036269           61 QALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDL--SLIGELSLLEILDL  138 (623)
Q Consensus        61 ~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~L~~L~l  138 (623)
                      +.++++++.+..+|..+   .+.|++|++++|.+   ..+|..+..+++|++|++++|. +..+  ..+.++++|++|++
T Consensus        13 ~~l~~~~~~l~~ip~~~---~~~l~~L~L~~n~i---~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~L   85 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGI---PRDVTELYLDGNQF---TLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLIL   85 (193)
T ss_dssp             TEEECTTSCCSSCCSCC---CTTCCEEECCSSCC---CSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred             CEEEcCCCCCCcCCCCC---CCCCCEEECCCCcC---chhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEEC
Confidence            67899999999888754   46899999999999   7888889999999999999999 8777  46899999999999


Q ss_pred             CCCCCcccc-ccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccccc
Q 036269          139 SESDVSEIP-VSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFC  191 (623)
Q Consensus       139 ~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~  191 (623)
                      ++|.++.++ ..+..+++|++|++++ +.+..+|.+.+..+++|+.|++++|.+
T Consensus        86 s~N~l~~i~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A           86 SYNRLRCIPPRTFDGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             CSSCCCBCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CCCccCEeCHHHhCCCCCCCEEECCC-CCCCeeChhhhhcCccccEEEeCCCCe
Confidence            999999776 4689999999999999 677788887788999999999999877

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.36  E-value=6.3e-12  Score=112.15  Aligned_cols=126  Identities=25%  Similarity=0.328  Sum_probs=91.1

Q ss_pred             CcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCch-hhhccccCcEEecc
Q 036269           38 LTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPS-SLSFLINLRTLSLH  116 (623)
Q Consensus        38 l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~-~~~~l~~L~~L~l~  116 (623)
                      .+.++++++.++.+|... .++|+.|++++|.+..++...|.++++|++|++++|.+   ..+|. .+..+++|++|+++
T Consensus         9 ~~~l~~~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l---~~~~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGI-PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQI---QSLPDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             TTEEECCSSCCSSCCTTC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC---CCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCCccCCCCC-CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcc---eEeChhHccCCCccCEEECC
Confidence            356777777777777544 36788888888888777776677888888888888887   45554 35778888888888


Q ss_pred             CCcCCCCc--ccccCCcCCcEEEcCCCCCcccccc-ccCCCccCEEeccCCCCCC
Q 036269          117 DCQHFGDL--SLIGELSLLEILDLSESDVSEIPVS-FGRLGHLRLLDLTDCYNLE  168 (623)
Q Consensus       117 ~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~  168 (623)
                      +|. ++.+  ..+..+++|++|++++|.++.+|.. +..+++|++|++++|....
T Consensus        85 ~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           85 ENK-LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             SSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCC-ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            887 7665  3467777888888888877777654 4667788888887754433

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.35  E-value=4.6e-13  Score=146.35  Aligned_cols=130  Identities=22%  Similarity=0.268  Sum_probs=110.7

Q ss_pred             CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCCcCCCCc-ccccCCcCCc
Q 036269           56 QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDL-SLIGELSLLE  134 (623)
Q Consensus        56 ~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~i-~~~~~l~~L~  134 (623)
                      .++.|+.|+|++|.+..++..++ ++++|++|+|++|.+   ..+|..+.++++|++|++++|. +..+ ..++++++|+
T Consensus       222 ~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N~l---~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~  296 (727)
T 4b8c_D          222 DDQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGNSL---TELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLK  296 (727)
T ss_dssp             CCCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTSCC---SCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCS
T ss_pred             cCCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCCcC---cccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCC
Confidence            78999999999999999998874 899999999999999   7899999999999999999999 8877 6789999999


Q ss_pred             EEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhcccc-CcEEEeccccc
Q 036269          135 ILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRK-LEELYMSKTFC  191 (623)
Q Consensus       135 ~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~-L~~L~l~~~~~  191 (623)
                      +|+|++|.++.+|..++++++|++|++++|...+.+|.. +..+.. +..+++.+|.+
T Consensus       297 ~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~-~~~~~~~~~~l~l~~N~l  353 (727)
T 4b8c_D          297 YFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKI-LTEKSVTGLIFYLRDNRP  353 (727)
T ss_dssp             EEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHH-HHHHHHHHHHHHHHHCCC
T ss_pred             EEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHH-HhhcchhhhHHhhccCcc
Confidence            999999999999999999999999999996554444543 544322 22356666665

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.35  E-value=3.7e-12  Score=115.19  Aligned_cols=123  Identities=22%  Similarity=0.249  Sum_probs=86.5

Q ss_pred             ceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCch--hhhccccCcEEeccCCcCCCCc--ccccCCcCCcEE
Q 036269           61 QALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPS--SLSFLINLRTLSLHDCQHFGDL--SLIGELSLLEIL  136 (623)
Q Consensus        61 ~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~--~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~L~~L  136 (623)
                      ++++++++.+..+|..+   .+.+++|++++|.+   ..++.  .+..+++|++|++++|. +..+  ..+.++++|++|
T Consensus        11 ~~l~~s~~~l~~ip~~~---~~~l~~L~l~~n~i---~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L   83 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDI---PLHTTELLLNDNEL---GRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQEL   83 (192)
T ss_dssp             TEEECTTSCCSSCCSCC---CTTCSEEECCSCCC---CSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEE
T ss_pred             CEEEcCCCCcCcCccCC---CCCCCEEECCCCcC---CccCCccccccCCCCCEEECCCCC-CCCcCHhHcCCcccCCEE
Confidence            67888888888777654   23788888888887   55554  37778888888888887 7655  467777888888


Q ss_pred             EcCCCCCccccc-cccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccccc
Q 036269          137 DLSESDVSEIPV-SFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFC  191 (623)
Q Consensus       137 ~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~  191 (623)
                      ++++|.++.++. .+..+++|++|++++| .+..+++..+..+++|++|++++|.+
T Consensus        84 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l  138 (192)
T 1w8a_A           84 QLGENKIKEISNKMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             ECCSCCCCEECSSSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             ECCCCcCCccCHHHhcCCCCCCEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence            888887776553 4677777777777773 44444333366677777777777655

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.29  E-value=3.1e-11  Score=107.57  Aligned_cols=124  Identities=26%  Similarity=0.423  Sum_probs=96.9

Q ss_pred             cceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCch-hhhccccCcEEeccCCcCCCCc--ccccCCcCCcEE
Q 036269           60 LQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPS-SLSFLINLRTLSLHDCQHFGDL--SLIGELSLLEIL  136 (623)
Q Consensus        60 L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~L~~L  136 (623)
                      .+.++++++.+..+|..+   .++|++|++++|.+   ..+|. .+..+++|++|++++|. +..+  ..+..+++|++|
T Consensus         9 ~~~l~~~~~~l~~~p~~~---~~~l~~L~l~~n~l---~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L   81 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGI---PSSATRLELESNKL---QSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTIL   81 (177)
T ss_dssp             TTEEECCSSCCSSCCTTC---CTTCSEEECCSSCC---CCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred             CCEEEecCCCCccCCCCC---CCCCcEEEeCCCcc---cEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEE
Confidence            467888888888887643   47889999999988   45554 46788899999999888 7766  346788888999


Q ss_pred             EcCCCCCcccccc-ccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccccc
Q 036269          137 DLSESDVSEIPVS-FGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFC  191 (623)
Q Consensus       137 ~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~  191 (623)
                      ++++|.++.+|.. +..+++|++|++++ +.++.+|..++..+++|++|++++|.+
T Consensus        82 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~  136 (177)
T 2o6r_A           82 YLHENKLQSLPNGVFDKLTQLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTNPW  136 (177)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             ECCCCCccccCHHHhhCCcccCEEECcC-CcceEeCHHHhcCCcccCEEEecCCCe
Confidence            9988888877654 67888888888888 466677776567788888888888766

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.27  E-value=2e-13  Score=124.31  Aligned_cols=143  Identities=22%  Similarity=0.237  Sum_probs=94.3

Q ss_pred             CCcEEEcccC--CcccccccC-CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEE
Q 036269           37 DLTGISLMFN--DIHEVHEGL-QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTL  113 (623)
Q Consensus        37 ~l~~L~l~~~--~~~~l~~~~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L  113 (623)
                      .++...+.+.  .++.+|..+ .+++|+.|++++|.+..+| . +.++++|++|++++|.+   ..+|..+..+++|++|
T Consensus        24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~-~~~l~~L~~L~l~~n~l---~~l~~~~~~~~~L~~L   98 (198)
T 1ds9_A           24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-S-LSGMENLRILSLGRNLI---KKIENLDAVADTLEEL   98 (198)
T ss_dssp             TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-C-HHHHTTCCEEEEEEEEE---CSCSSHHHHHHHCSEE
T ss_pred             chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-c-cccCCCCCEEECCCCCc---ccccchhhcCCcCCEE
Confidence            3555555544  345555444 6777888888777777766 2 57778888888887777   5677766677778888


Q ss_pred             eccCCcCCCCcccccCCcCCcEEEcCCCCCccccc--cccCCCccCEEeccCCCCCCcCc---------hhhhhccccCc
Q 036269          114 SLHDCQHFGDLSLIGELSLLEILDLSESDVSEIPV--SFGRLGHLRLLDLTDCYNLELIP---------RGVLSRLRKLE  182 (623)
Q Consensus       114 ~l~~~~~l~~i~~~~~l~~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~l~~~~~~~~l~---------~~~~~~l~~L~  182 (623)
                      ++++|. +..++.+..+++|++|++++|.++.+|.  .+..+++|++|++++|......|         ..++..+++|+
T Consensus        99 ~L~~N~-l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~  177 (198)
T 1ds9_A           99 WISYNQ-IASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLK  177 (198)
T ss_dssp             EEEEEE-CCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCS
T ss_pred             ECcCCc-CCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcE
Confidence            887777 7666666777777777777777776553  56777777777777743322212         12345566666


Q ss_pred             EEE
Q 036269          183 ELY  185 (623)
Q Consensus       183 ~L~  185 (623)
                      .|+
T Consensus       178 ~Ld  180 (198)
T 1ds9_A          178 KLD  180 (198)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.25  E-value=1.8e-11  Score=121.13  Aligned_cols=190  Identities=17%  Similarity=0.163  Sum_probs=130.6

Q ss_pred             CCCCcEEEcccCCcc--------------------cccccC--C--------CCCcceEEccCCCCCCCChhhHhCCCcc
Q 036269           35 FEDLTGISLMFNDIH--------------------EVHEGL--Q--------CPRLQALFLQKNDLLDIPDPFFQGMKDL   84 (623)
Q Consensus        35 ~~~l~~L~l~~~~~~--------------------~l~~~~--~--------~~~L~~L~l~~~~~~~l~~~~~~~l~~L   84 (623)
                      +++|+.|++++|.+.                    .+|+..  .        |++|+.+.+.+ .+..++..+|.+|++|
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L  126 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL  126 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence            578999999998887                    444433  6        88888888888 7777888888888999


Q ss_pred             cEEEccCCcccccCCCc-hhhhccccCcEEeccCCcC---CCCc--ccc-------------------------------
Q 036269           85 KVLDLGGSGVFSLFSLP-SSLSFLINLRTLSLHDCQH---FGDL--SLI-------------------------------  127 (623)
Q Consensus        85 r~L~l~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~---l~~i--~~~-------------------------------  127 (623)
                      +.+++..+.+   ..++ .+|..+.++.++.......   ...+  ..+                               
T Consensus       127 ~~l~l~~n~i---~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~  203 (329)
T 3sb4_A          127 KICQIRKKTA---PNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRD  203 (329)
T ss_dssp             CEEEBCCSSC---CEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGG
T ss_pred             ceEEcCCCCc---cccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccc
Confidence            9999988876   3333 3455666666665544110   0000  000                               


Q ss_pred             -------------------cCCcCCcEEEcCCCCCccccc-cccCCCccCEEeccCCCCCCcCchhhhhccccCc-EEEe
Q 036269          128 -------------------GELSLLEILDLSESDVSEIPV-SFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLE-ELYM  186 (623)
Q Consensus       128 -------------------~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~-~L~l  186 (623)
                                         ..+++|+.+++++|.++.+|. .|..+++|+.+++.++  +..++..++.++.+|+ .+.+
T Consensus       204 ~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l  281 (329)
T 3sb4_A          204 INFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLEL  281 (329)
T ss_dssp             CSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEE
T ss_pred             cceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEE
Confidence                               026788888888888887774 5778888888888873  7778777788888888 8888


Q ss_pred             cccccccccccccccccccccccccCCCCccEEEeecCCCccCCCc--ccccCccEEE
Q 036269          187 SKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSD--MSFQNLTSFS  242 (623)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~  242 (623)
                      .. .+.           .-....+.++++|+.+++..+.+..++..  .++++|+.++
T Consensus       282 ~~-~l~-----------~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          282 PA-SVT-----------AIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             CT-TCC-----------EECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             cc-cce-----------EEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            66 331           22235677888888888887777777665  5666777654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.23  E-value=3.2e-11  Score=127.61  Aligned_cols=102  Identities=23%  Similarity=0.271  Sum_probs=73.6

Q ss_pred             cccEEEccCCcccccCCCchhhhccccCcEEeccCCcCCCCc-ccccCCcCCcEEEcCCCCCccccccccCCCccCEEec
Q 036269           83 DLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDL-SLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDL  161 (623)
Q Consensus        83 ~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~i-~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l  161 (623)
                      .|++|++++|.+   ..+|. +..+++|++|++++|. +..+ ..++.+++|++|++++|.++.+| .++.+++|++|++
T Consensus       442 ~L~~L~Ls~n~l---~~lp~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~L  515 (567)
T 1dce_A          442 DVRVLHLAHKDL---TVLCH-LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLL  515 (567)
T ss_dssp             TCSEEECTTSCC---SSCCC-GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEEC
T ss_pred             CceEEEecCCCC---CCCcC-ccccccCcEeecCccc-ccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEEC
Confidence            477777777777   55665 7777777777777777 6666 56777777777777777777777 6777777777777


Q ss_pred             cCCCCCCcC--chhhhhccccCcEEEecccccc
Q 036269          162 TDCYNLELI--PRGVLSRLRKLEELYMSKTFCH  192 (623)
Q Consensus       162 ~~~~~~~~l--~~~~~~~l~~L~~L~l~~~~~~  192 (623)
                      ++ +.++.+  |.. ++.+++|+.|++++|.+.
T Consensus       516 s~-N~l~~~~~p~~-l~~l~~L~~L~L~~N~l~  546 (567)
T 1dce_A          516 CN-NRLQQSAAIQP-LVSCPRLVLLNLQGNSLC  546 (567)
T ss_dssp             CS-SCCCSSSTTGG-GGGCTTCCEEECTTSGGG
T ss_pred             CC-CCCCCCCCcHH-HhcCCCCCEEEecCCcCC
Confidence            77 445555  444 777777777777777763

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.19  E-value=1.3e-12  Score=119.06  Aligned_cols=125  Identities=23%  Similarity=0.261  Sum_probs=92.3

Q ss_pred             CcceEEccCC--CCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCCcCCCCc-ccccCCcCCcE
Q 036269           59 RLQALFLQKN--DLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDL-SLIGELSLLEI  135 (623)
Q Consensus        59 ~L~~L~l~~~--~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~i-~~~~~l~~L~~  135 (623)
                      .++...+.+.  .+..++.. +.++++|++|++++|.+   ..+| .+..+++|++|++++|. +..+ ..+..+++|++
T Consensus        24 ~l~~~~l~~~~~~l~~l~~~-~~~l~~L~~L~ls~n~l---~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~   97 (198)
T 1ds9_A           24 EAEKVELHGMIPPIEKMDAT-LSTLKACKHLALSTNNI---EKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEE   97 (198)
T ss_dssp             TCSEEECCBCCTTCCCCHHH-HHHTTTCSEEECSEEEE---SCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSE
T ss_pred             chheeEeccccCcHhhhhHH-HhcCCCCCEEECCCCCC---cccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCE
Confidence            3455555444  33355544 58888999999988888   5677 78888889999998888 7766 44556688888


Q ss_pred             EEcCCCCCccccccccCCCccCEEeccCCCCCCcCch-hhhhccccCcEEEeccccc
Q 036269          136 LDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPR-GVLSRLRKLEELYMSKTFC  191 (623)
Q Consensus       136 L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~-~~~~~l~~L~~L~l~~~~~  191 (623)
                      |++++|.++.+| .+.++++|++|++++ +.+..++. ..+..+++|++|++++|.+
T Consensus        98 L~L~~N~l~~l~-~~~~l~~L~~L~l~~-N~i~~~~~~~~l~~l~~L~~L~l~~N~l  152 (198)
T 1ds9_A           98 LWISYNQIASLS-GIEKLVNLRVLYMSN-NKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             EEEEEEECCCHH-HHHHHHHSSEEEESE-EECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred             EECcCCcCCcCC-ccccCCCCCEEECCC-CcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence            888888888777 677888888888888 45555553 3377788888888888876

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.16  E-value=4e-11  Score=118.61  Aligned_cols=79  Identities=10%  Similarity=0.036  Sum_probs=37.5

Q ss_pred             cCCCccEEEEeecCCcccccchhHHHhccccc-eEEEeccccceeeeeccceeccccccccccCccEEecCCccchhhcc
Q 036269          372 CLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQ-RLRVEGCELLVSVFEIERVNIAKEETELFSSLEKLTLIGLPRMTDIW  450 (623)
Q Consensus       372 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~-~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~  450 (623)
                      .+++|+.+++.+.  ++. ++...+..+++|+ .+++.+  +++++.        +..+..+++|+.+++..+ +++.+.
T Consensus       248 ~~~~L~~l~l~~n--i~~-I~~~aF~~~~~L~~~l~l~~--~l~~I~--------~~aF~~c~~L~~l~l~~n-~i~~I~  313 (329)
T 3sb4_A          248 QKKYLLKIKLPHN--LKT-IGQRVFSNCGRLAGTLELPA--SVTAIE--------FGAFMGCDNLRYVLATGD-KITTLG  313 (329)
T ss_dssp             TCTTCCEEECCTT--CCE-ECTTTTTTCTTCCEEEEECT--TCCEEC--------TTTTTTCTTEEEEEECSS-CCCEEC
T ss_pred             CCCCCCEEECCcc--cce-ehHHHhhCChhccEEEEEcc--cceEEc--------hhhhhCCccCCEEEeCCC-ccCccc
Confidence            3455555555541  433 3333355555555 555554  444442        334455556666665443 344432


Q ss_pred             cCCCcccccCCccEEE
Q 036269          451 KGDTQFVSLHDLKKIR  466 (623)
Q Consensus       451 ~~~~~~~~l~~L~~L~  466 (623)
                      .  ..+..+++|+.++
T Consensus       314 ~--~aF~~~~~L~~ly  327 (329)
T 3sb4_A          314 D--ELFGNGVPSKLIY  327 (329)
T ss_dssp             T--TTTCTTCCCCEEE
T ss_pred             h--hhhcCCcchhhhc
Confidence            1  2233455555544

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.14  E-value=2.6e-10  Score=100.90  Aligned_cols=99  Identities=22%  Similarity=0.383  Sum_probs=48.6

Q ss_pred             cEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCC
Q 036269           39 TGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDC  118 (623)
Q Consensus        39 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~  118 (623)
                      +.++++++.++.+|..+. ++|+.|++++|.+..+++..|.++++|++|++++|.+   ..+|..               
T Consensus        15 ~~l~~~~n~l~~iP~~~~-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l---~~i~~~---------------   75 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP-TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKL---TAIPTG---------------   75 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC---CCCCTT---------------
T ss_pred             cEEEeCCCCCCccCCCcC-CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCC---CccChh---------------
Confidence            345555555555544332 4455555555555544333344555555555555544   333332               


Q ss_pred             cCCCCcccccCCcCCcEEEcCCCCCcccccc-ccCCCccCEEeccC
Q 036269          119 QHFGDLSLIGELSLLEILDLSESDVSEIPVS-FGRLGHLRLLDLTD  163 (623)
Q Consensus       119 ~~l~~i~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~  163 (623)
                             .+.++++|++|++++|.++.+|.. +..+++|++|++++
T Consensus        76 -------~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~  114 (174)
T 2r9u_A           76 -------VFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYN  114 (174)
T ss_dssp             -------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCS
T ss_pred             -------HhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCC
Confidence                   234455555555555555555433 55555566666555

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.11  E-value=3.9e-10  Score=99.43  Aligned_cols=96  Identities=23%  Similarity=0.297  Sum_probs=44.1

Q ss_pred             eEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCCcCCCCc--ccccCCcCCcEEEcC
Q 036269           62 ALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDL--SLIGELSLLEILDLS  139 (623)
Q Consensus        62 ~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~L~~L~l~  139 (623)
                      .+++++|.+..+|..+   .++|++|++++|.+.  +..|..+..+++|++|++++|. +..+  ..+.++++|++|+++
T Consensus        13 ~l~~s~n~l~~ip~~~---~~~l~~L~L~~N~i~--~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           13 TVDCSGKSLASVPTGI---PTTTQVLYLYDNQIT--KLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             EEECTTSCCSSCCSCC---CTTCSEEECCSSCCC--CCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred             EEEeCCCCcCccCccC---CCCCcEEEcCCCcCC--ccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECC
Confidence            4444444444444322   244444444444442  1113334444444444444444 4333  223445555555555


Q ss_pred             CCCCccccc-cccCCCccCEEeccC
Q 036269          140 ESDVSEIPV-SFGRLGHLRLLDLTD  163 (623)
Q Consensus       140 ~~~i~~lp~-~i~~l~~L~~L~l~~  163 (623)
                      +|.++.+|. .+.++++|++|++++
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~  111 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLN  111 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCC
Confidence            555555443 355555666666655

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.08  E-value=3.7e-10  Score=99.95  Aligned_cols=101  Identities=26%  Similarity=0.469  Sum_probs=80.0

Q ss_pred             cEEEccCCcccccCCCchhhhccccCcEEeccCCcCCCCc--ccccCCcCCcEEEcCCCCCcccccc-ccCCCccCEEec
Q 036269           85 KVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDL--SLIGELSLLEILDLSESDVSEIPVS-FGRLGHLRLLDL  161 (623)
Q Consensus        85 r~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l  161 (623)
                      ++++++++.+   +.+|..+.  ++|++|++++|. +..+  ..+.++++|++|++++|.++.+|.. +.++++|++|++
T Consensus        15 ~~l~~~~n~l---~~iP~~~~--~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L   88 (174)
T 2r9u_A           15 TLVNCQNIRL---ASVPAGIP--TDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDL   88 (174)
T ss_dssp             SEEECCSSCC---SSCCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cEEEeCCCCC---CccCCCcC--CCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEEC
Confidence            5666776666   56665442  677777777777 6555  4577888888888888888888865 589999999999


Q ss_pred             cCCCCCCcCchhhhhccccCcEEEecccccc
Q 036269          162 TDCYNLELIPRGVLSRLRKLEELYMSKTFCH  192 (623)
Q Consensus       162 ~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~  192 (623)
                      ++ +.+..+|.+.+..+++|++|++++|.+.
T Consensus        89 ~~-N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           89 ND-NHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CS-SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             CC-CccceeCHHHhccccCCCEEEeCCCCcc
Confidence            99 6777888877899999999999999874

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.03  E-value=9e-10  Score=97.09  Aligned_cols=102  Identities=27%  Similarity=0.480  Sum_probs=73.2

Q ss_pred             cccEEEccCCcccccCCCchhhhccccCcEEeccCCcCCCCc--ccccCCcCCcEEEcCCCCCcccccc-ccCCCccCEE
Q 036269           83 DLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDL--SLIGELSLLEILDLSESDVSEIPVS-FGRLGHLRLL  159 (623)
Q Consensus        83 ~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L  159 (623)
                      ..++++++++.+   ..+|..+  .++|++|++++|. +..+  ..+.++++|++|++++|.++.+|.. +.++++|++|
T Consensus        10 ~~~~l~~s~n~l---~~ip~~~--~~~l~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L   83 (170)
T 3g39_A           10 SGTTVDCSGKSL---ASVPTGI--PTTTQVLYLYDNQ-ITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQL   83 (170)
T ss_dssp             ETTEEECTTSCC---SSCCSCC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCEEEeCCCCc---CccCccC--CCCCcEEEcCCCc-CCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEE
Confidence            356788888887   6677655  3678888888887 7665  4577777888888888877776654 4677778888


Q ss_pred             eccCCCCCCcCchhhhhccccCcEEEeccccc
Q 036269          160 DLTDCYNLELIPRGVLSRLRKLEELYMSKTFC  191 (623)
Q Consensus       160 ~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~  191 (623)
                      ++++ +.+..++.+.+..+++|+.|++++|.+
T Consensus        84 ~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~  114 (170)
T 3g39_A           84 SLND-NQLKSIPRGAFDNLKSLTHIWLLNNPW  114 (170)
T ss_dssp             ECCS-SCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             ECCC-CccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence            8777 456666665567777777777777655

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.88  E-value=4e-10  Score=112.67  Aligned_cols=161  Identities=17%  Similarity=0.101  Sum_probs=104.3

Q ss_pred             CCCcceEEccCCCCCCCChhhHh-----CCCcccEEEccCCcccccCCCc-hhhhccccCcEEeccCCcCCCCc--ccc-
Q 036269           57 CPRLQALFLQKNDLLDIPDPFFQ-----GMKDLKVLDLGGSGVFSLFSLP-SSLSFLINLRTLSLHDCQHFGDL--SLI-  127 (623)
Q Consensus        57 ~~~L~~L~l~~~~~~~l~~~~~~-----~l~~Lr~L~l~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~l~~i--~~~-  127 (623)
                      .+.|+.|++++|.+.......+.     ..++|++|++++|.++  +.-. .....+++|++|++++|. +++.  ..+ 
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~--~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~  147 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLD--PAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLR  147 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCC--HHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCC--HHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHHH
Confidence            35788888888887632222222     2368889999888874  2222 223456788889998887 7543  222 


Q ss_pred             ----cCCcCCcEEEcCCCCCcc-----ccccccCCCccCEEeccCCCCCCcCc----hhhhhccccCcEEEecccccccc
Q 036269          128 ----GELSLLEILDLSESDVSE-----IPVSFGRLGHLRLLDLTDCYNLELIP----RGVLSRLRKLEELYMSKTFCHWQ  194 (623)
Q Consensus       128 ----~~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~L~l~~~~~~~~l~----~~~~~~l~~L~~L~l~~~~~~~~  194 (623)
                          ...++|++|++++|.++.     ++..+...++|++|++++|. ++...    ...+...++|++|++++|.+...
T Consensus       148 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~  226 (372)
T 3un9_A          148 DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGDT  226 (372)
T ss_dssp             HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHH
T ss_pred             HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHH
Confidence                346788899998888763     45566778888889888853 44322    12256677888888888877311


Q ss_pred             cccccccccccccccccCCCCccEEEeecCCCcc
Q 036269          195 FENEDDSRSNAKFIELGALSRLTSLHIDIPEGEI  228 (623)
Q Consensus       195 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  228 (623)
                      .       ...+...+...++|+.|++++|.++.
T Consensus       227 g-------~~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          227 A-------ALALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             H-------HHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             H-------HHHHHHHHHhCCCCCEEeccCCCCCH
Confidence            1       12333445566788888888887543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.84  E-value=4.1e-10  Score=112.61  Aligned_cols=154  Identities=14%  Similarity=0.037  Sum_probs=113.1

Q ss_pred             CCCCcEEEcccCCcccc-----cccC--CCCCcceEEccCCCCCC-CChhhHhCCCcccEEEccCCcccccCCCchhh--
Q 036269           35 FEDLTGISLMFNDIHEV-----HEGL--QCPRLQALFLQKNDLLD-IPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSL--  104 (623)
Q Consensus        35 ~~~l~~L~l~~~~~~~l-----~~~~--~~~~L~~L~l~~~~~~~-l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~--  104 (623)
                      .+.++.|++++|.++..     ....  ..++|+.|++++|.+.+ -...++..+++|++|++++|.++  +.-...+  
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~--~~~~~~L~~  148 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLG--PEACKDLRD  148 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCC--HHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCC--HHHHHHHHH
Confidence            36799999999998642     2222  23689999999999862 22233455778999999999984  2222233  


Q ss_pred             ---hccccCcEEeccCCcCCCCc------ccccCCcCCcEEEcCCCCCcc-----ccccccCCCccCEEeccCCCCCCcC
Q 036269          105 ---SFLINLRTLSLHDCQHFGDL------SLIGELSLLEILDLSESDVSE-----IPVSFGRLGHLRLLDLTDCYNLELI  170 (623)
Q Consensus       105 ---~~l~~L~~L~l~~~~~l~~i------~~~~~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~L~l~~~~~~~~l  170 (623)
                         ...++|++|++++|. +++.      ..+...++|++|++++|.++.     ++..+...++|++|++++| .++..
T Consensus       149 ~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~  226 (372)
T 3un9_A          149 LLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDT  226 (372)
T ss_dssp             HHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHH
T ss_pred             HHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHH
Confidence               235789999999998 8542      345788999999999999873     4567778889999999995 45433


Q ss_pred             ch----hhhhccccCcEEEecccccc
Q 036269          171 PR----GVLSRLRKLEELYMSKTFCH  192 (623)
Q Consensus       171 ~~----~~~~~l~~L~~L~l~~~~~~  192 (623)
                      ..    ..+...+.|++|++++|.+.
T Consensus       227 g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          227 AALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             HHHHHHHHHHhCCCCCEEeccCCCCC
Confidence            22    12456789999999999873

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.82  E-value=1.1e-07  Score=95.87  Aligned_cols=184  Identities=14%  Similarity=0.180  Sum_probs=107.0

Q ss_pred             CCCcEEEcccCCcccccccC-CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCc-hhhhccccCcEE
Q 036269           36 EDLTGISLMFNDIHEVHEGL-QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLP-SSLSFLINLRTL  113 (623)
Q Consensus        36 ~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp-~~~~~l~~L~~L  113 (623)
                      ..++.+.+.. .++.++... .-.+|+.+.+..+ +..++..+|.++ +|+.+.+.. .+   ..++ .+|..|++|+.+
T Consensus       113 ~~l~~i~ip~-~i~~I~~~aF~~~~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l---~~I~~~aF~~c~~L~~l  185 (401)
T 4fdw_A          113 KGYNEIILPN-SVKSIPKDAFRNSQIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TL---EQLKEDIFYYCYNLKKA  185 (401)
T ss_dssp             SSCSEEECCT-TCCEECTTTTTTCCCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TC---CEECSSTTTTCTTCCEE
T ss_pred             CCccEEEECC-ccCEehHhhcccCCccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Cc---cEehHHHhhCcccCCee
Confidence            3444444432 344454433 2235777777655 556666666664 577777765 34   3333 456677777777


Q ss_pred             eccCCcCCCCc--ccccCCcCCcEEEcCCCCCcccc-ccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecccc
Q 036269          114 SLHDCQHFGDL--SLIGELSLLEILDLSESDVSEIP-VSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTF  190 (623)
Q Consensus       114 ~l~~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~  190 (623)
                      ++.++. +..+  ..+. ..+|+.+.+..+ +..++ ..|..+++|+.+.+..  .+..++..++.+ .+|+.+.+..+ 
T Consensus       186 ~l~~n~-l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF~~-~~L~~i~lp~~-  258 (401)
T 4fdw_A          186 DLSKTK-ITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAFRE-SGITTVKLPNG-  258 (401)
T ss_dssp             ECTTSC-CSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT--TCCEECTTTTTT-CCCSEEEEETT-
T ss_pred             ecCCCc-ceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC--CccCcccccccc-CCccEEEeCCC-
Confidence            777766 6555  2333 467777777643 55554 4566777777777765  355666655655 56777777432 


Q ss_pred             cccccccccccccccccccccCCCCccEEEeecCCCc-----cCCCc--ccccCccEEEEE
Q 036269          191 CHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGE-----IMPSD--MSFQNLTSFSIT  244 (623)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-----~~~~~--~~~~~L~~L~l~  244 (623)
                      +.           .-....+.++++|+.+.+.++...     .++..  ..+++|+.+.+.
T Consensus       259 i~-----------~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~  308 (401)
T 4fdw_A          259 VT-----------NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP  308 (401)
T ss_dssp             CC-----------EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC
T ss_pred             cc-----------EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC
Confidence            21           122345667777777777765543     34333  566677776553

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.81  E-value=7.6e-08  Score=97.55  Aligned_cols=328  Identities=13%  Similarity=0.112  Sum_probs=178.6

Q ss_pred             cccccccC--CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCc-hhhhccccCcEEeccCCcCCCCc
Q 036269           48 IHEVHEGL--QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLP-SSLSFLINLRTLSLHDCQHFGDL  124 (623)
Q Consensus        48 ~~~l~~~~--~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~l~~i  124 (623)
                      ++++....  +|.+|+.+.+..+ +..+...+|.+|++|+.+++..+ +   ..++ .++..+.+|+.+.+..+  +..+
T Consensus        59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l---~~I~~~aF~~c~~L~~i~~p~~--l~~i  131 (394)
T 4fs7_A           59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-V---KMIGRCTFSGCYALKSILLPLM--LKSI  131 (394)
T ss_dssp             EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-C---CEECTTTTTTCTTCCCCCCCTT--CCEE
T ss_pred             EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-c---eEccchhhcccccchhhcccCc--eeee
Confidence            56676654  8899999999744 66788888999999999999755 4   3443 45778888888777643  3333


Q ss_pred             --ccccCCcCCcEEEcCCCCCccc-cccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccccccccccccccc
Q 036269          125 --SLIGELSLLEILDLSESDVSEI-PVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDS  201 (623)
Q Consensus       125 --~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  201 (623)
                        ..+.+...+.... .. .+..+ ...+..+++|+.+.+..  ....++...+..+.+|+.+.+..+.-          
T Consensus       132 ~~~aF~~~~~~~~~~-~~-~~~~i~~~aF~~c~~L~~i~l~~--~~~~I~~~~F~~c~~L~~i~l~~~~~----------  197 (394)
T 4fs7_A          132 GVEAFKGCDFKEITI-PE-GVTVIGDEAFATCESLEYVSLPD--SMETLHNGLFSGCGKLKSIKLPRNLK----------  197 (394)
T ss_dssp             CTTTTTTCCCSEEEC-CT-TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCBCCCCTTCC----------
T ss_pred             cceeeeccccccccc-Cc-cccccchhhhcccCCCcEEecCC--ccceeccccccCCCCceEEEcCCCce----------
Confidence              3344443333322 22 12222 24577788888888865  34556666677888888887755411          


Q ss_pred             ccccccccccCCCCccEEEeecCCCccCCCc-ccccCccEEEEEeCCCCCCCcchhhhhhhhcccccccceeeecccccc
Q 036269          202 RSNAKFIELGALSRLTSLHIDIPEGEIMPSD-MSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSRAMGLSQDMRI  280 (623)
Q Consensus       202 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~  280 (623)
                        .-....+.++..|+.+.+..+.. .+... .....|+.+.+.....                                
T Consensus       198 --~I~~~~F~~~~~L~~i~~~~~~~-~i~~~~~~~~~l~~i~ip~~~~--------------------------------  242 (394)
T 4fs7_A          198 --IIRDYCFAECILLENMEFPNSLY-YLGDFALSKTGVKNIIIPDSFT--------------------------------  242 (394)
T ss_dssp             --EECTTTTTTCTTCCBCCCCTTCC-EECTTTTTTCCCCEEEECTTCC--------------------------------
T ss_pred             --EeCchhhccccccceeecCCCce-EeehhhcccCCCceEEECCCce--------------------------------
Confidence              11123455566666655543321 11111 3334555555421110                                


Q ss_pred             ccchHHHHHHHhhceeEeecccCCcccccccccccCccCccEEEEecccCceeecccccccccccccccceeecccCccc
Q 036269          281 SALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLLKLEWLMIVDNRNF  360 (623)
Q Consensus       281 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l  360 (623)
                       .+.......+..++.+.+....  .. +....+..++.++.+.....    .++..    ....+.+|+.+.+.+.  +
T Consensus       243 -~i~~~~f~~~~~l~~~~~~~~~--~~-i~~~~F~~~~~l~~~~~~~~----~i~~~----~F~~~~~L~~i~l~~~--i  308 (394)
T 4fs7_A          243 -ELGKSVFYGCTDLESISIQNNK--LR-IGGSLFYNCSGLKKVIYGSV----IVPEK----TFYGCSSLTEVKLLDS--V  308 (394)
T ss_dssp             -EECSSTTTTCSSCCEEEECCTT--CE-ECSCTTTTCTTCCEEEECSS----EECTT----TTTTCTTCCEEEECTT--C
T ss_pred             -ecccccccccccceeEEcCCCc--ce-eeccccccccccceeccCce----eeccc----cccccccccccccccc--c
Confidence             0000000001344444443221  11 11112244556666555433    12111    3344566777766532  3


Q ss_pred             ccccccccCCCcCCCccEEEEeecCCcccccchhHHHhccccceEEEeccccceeeeeccceeccccccccccCccEEec
Q 036269          361 VEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEIERVNIAKEETELFSSLEKLTL  440 (623)
Q Consensus       361 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l  440 (623)
                      +.+  +......+.+|+.+.+.+  .++. +....+.+|.+|+.+.+..  +++++.        ...+..+++|+.+++
T Consensus       309 ~~I--~~~aF~~c~~L~~i~lp~--~v~~-I~~~aF~~c~~L~~i~lp~--~l~~I~--------~~aF~~C~~L~~i~l  373 (394)
T 4fs7_A          309 KFI--GEEAFESCTSLVSIDLPY--LVEE-IGKRSFRGCTSLSNINFPL--SLRKIG--------ANAFQGCINLKKVEL  373 (394)
T ss_dssp             CEE--CTTTTTTCTTCCEECCCT--TCCE-ECTTTTTTCTTCCEECCCT--TCCEEC--------TTTBTTCTTCCEEEE
T ss_pred             cee--chhhhcCCCCCCEEEeCC--cccE-EhHHhccCCCCCCEEEECc--cccEeh--------HHHhhCCCCCCEEEE
Confidence            322  222233567788887753  3554 4444477788888888865  366663        445677888888888


Q ss_pred             CCccchhhcccCCCcccccCCccEE
Q 036269          441 IGLPRMTDIWKGDTQFVSLHDLKKI  465 (623)
Q Consensus       441 ~~c~~l~~i~~~~~~~~~l~~L~~L  465 (623)
                      ...  ++.+   ...+..+++|+.+
T Consensus       374 p~~--~~~~---~~~F~~c~~L~~I  393 (394)
T 4fs7_A          374 PKR--LEQY---RYDFEDTTKFKWI  393 (394)
T ss_dssp             EGG--GGGG---GGGBCTTCEEEEE
T ss_pred             CCC--CEEh---hheecCCCCCcEE
Confidence            643  4443   2335556666654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.76  E-value=1.1e-07  Score=95.96  Aligned_cols=192  Identities=15%  Similarity=0.151  Sum_probs=137.1

Q ss_pred             CCcEEEcccCCcccccccC--CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCc-hhhhccccCcEE
Q 036269           37 DLTGISLMFNDIHEVHEGL--QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLP-SSLSFLINLRTL  113 (623)
Q Consensus        37 ~l~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp-~~~~~l~~L~~L  113 (623)
                      +|+.+.+.. .++.+....  .|++|+.+++.+|.+..++...|. +..|+.+.+..+ +   ..++ .+|.++++|+.+
T Consensus       158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l---~~I~~~aF~~~~~L~~l  231 (401)
T 4fdw_A          158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-L---KEIGSQAFLKTSQLKTI  231 (401)
T ss_dssp             CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-C---CEECTTTTTTCTTCCCE
T ss_pred             CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-h---heehhhHhhCCCCCCEE
Confidence            577788775 566776544  889999999999999888888877 689999999855 4   4444 467889999999


Q ss_pred             eccCCcCCCCc--ccccCCcCCcEEEcCCCCCcccc-ccccCCCccCEEeccCCCC----CCcCchhhhhccccCcEEEe
Q 036269          114 SLHDCQHFGDL--SLIGELSLLEILDLSESDVSEIP-VSFGRLGHLRLLDLTDCYN----LELIPRGVLSRLRKLEELYM  186 (623)
Q Consensus       114 ~l~~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~----~~~l~~~~~~~l~~L~~L~l  186 (623)
                      ++..+  +..+  ..+.+ .+|+.+.+. +.++.++ ..|..+++|+.+.+.++..    ...++...+.++++|+.+.+
T Consensus       232 ~l~~~--l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l  307 (401)
T 4fdw_A          232 EIPEN--VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEI  307 (401)
T ss_dssp             ECCTT--CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECC
T ss_pred             ecCCC--ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEe
Confidence            99864  5555  44555 688998884 4466664 5678889999999877321    12477777888999999988


Q ss_pred             cccccccccccccccccccccccccCCCCccEEEeecCCCccCCCc--ccccCccEEEEEeCCCCCCC
Q 036269          187 SKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSD--MSFQNLTSFSITIGGPEEVP  252 (623)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~  252 (623)
                      ..+ +.           .-....+.++++|+.+.+..+ +..+...  ..+ +|+.+.+..+......
T Consensus       308 ~~~-i~-----------~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~  361 (401)
T 4fdw_A          308 PES-IR-----------ILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVF  361 (401)
T ss_dssp             CTT-CC-----------EECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCC
T ss_pred             CCc-eE-----------EEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccc
Confidence            743 31           222345777888998888544 5555444  556 8888888877654443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.76  E-value=1.3e-07  Score=95.92  Aligned_cols=328  Identities=13%  Similarity=0.076  Sum_probs=201.9

Q ss_pred             CCCChhhHhCCCcccEEEccCCcccccCCCc-hhhhccccCcEEeccCCcCCCCc--ccccCCcCCcEEEcCCCCCcccc
Q 036269           71 LDIPDPFFQGMKDLKVLDLGGSGVFSLFSLP-SSLSFLINLRTLSLHDCQHFGDL--SLIGELSLLEILDLSESDVSEIP  147 (623)
Q Consensus        71 ~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp  147 (623)
                      +.+...+|.+|++|+.+.+..+ +   ..+. .+|.+|.+|+.+++.++  +..+  ..+.++.+|+.+.+..+ +..+.
T Consensus        60 tsIg~~AF~~c~~L~~i~lp~~-i---~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~~-l~~i~  132 (394)
T 4fs7_A           60 VSIGYAAFQGCRKVTEIKIPST-V---REIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPLM-LKSIG  132 (394)
T ss_dssp             EEECTTTTTTCTTEEEEECCTT-C---CEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCTT-CCEEC
T ss_pred             eEhHHHHhhCCCCceEEEeCCC-c---cCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccCc-eeeec
Confidence            4678888999999999999754 5   4444 46889999999999754  5555  56778888888777654 33332


Q ss_pred             -ccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecccccccccccccccccccccccccCCCCccEEEeecCCC
Q 036269          148 -VSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEG  226 (623)
Q Consensus       148 -~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  226 (623)
                       ..+..+..+.....   .....+....+.++.+|+.+.+..+..            .-....+..+.+|+.+.+..+ +
T Consensus       133 ~~aF~~~~~~~~~~~---~~~~~i~~~aF~~c~~L~~i~l~~~~~------------~I~~~~F~~c~~L~~i~l~~~-~  196 (394)
T 4fs7_A          133 VEAFKGCDFKEITIP---EGVTVIGDEAFATCESLEYVSLPDSME------------TLHNGLFSGCGKLKSIKLPRN-L  196 (394)
T ss_dssp             TTTTTTCCCSEEECC---TTCCEECTTTTTTCTTCCEEECCTTCC------------EECTTTTTTCTTCCBCCCCTT-C
T ss_pred             ceeeecccccccccC---ccccccchhhhcccCCCcEEecCCccc------------eeccccccCCCCceEEEcCCC-c
Confidence             34445444333332   234455555689999999999866432            122335677888888877654 3


Q ss_pred             ccCCCc--ccccCccEEEEEeCCCCCCCcchhhhhhhhcccccccceeeeccccccccchHHHHHHHhhceeEeecccCC
Q 036269          227 EIMPSD--MSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEILALGDVND  304 (623)
Q Consensus       227 ~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  304 (623)
                      ..+...  ..+..|+.+.+....                      ..  +         ...... ..+|+.+.+.... 
T Consensus       197 ~~I~~~~F~~~~~L~~i~~~~~~----------------------~~--i---------~~~~~~-~~~l~~i~ip~~~-  241 (394)
T 4fs7_A          197 KIIRDYCFAECILLENMEFPNSL----------------------YY--L---------GDFALS-KTGVKNIIIPDSF-  241 (394)
T ss_dssp             CEECTTTTTTCTTCCBCCCCTTC----------------------CE--E---------CTTTTT-TCCCCEEEECTTC-
T ss_pred             eEeCchhhccccccceeecCCCc----------------------eE--e---------ehhhcc-cCCCceEEECCCc-
Confidence            333332  445555554332111                      00  0         000000 1456666664321 


Q ss_pred             cccccccccccCccCccEEEEecccCceeecccccccccccccccceeecccCcccccccccccCCCcCCCccEEEEeec
Q 036269          305 LENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLLKLEWLMIVDNRNFVEICHGQLPAGCLSNVKRLDVRDC  384 (623)
Q Consensus       305 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c  384 (623)
                       .. +....+..+..++.+.+...  +..+...    ....++.++.+......      ........+.+|+.+.+.+ 
T Consensus       242 -~~-i~~~~f~~~~~l~~~~~~~~--~~~i~~~----~F~~~~~l~~~~~~~~~------i~~~~F~~~~~L~~i~l~~-  306 (394)
T 4fs7_A          242 -TE-LGKSVFYGCTDLESISIQNN--KLRIGGS----LFYNCSGLKKVIYGSVI------VPEKTFYGCSSLTEVKLLD-  306 (394)
T ss_dssp             -CE-ECSSTTTTCSSCCEEEECCT--TCEECSC----TTTTCTTCCEEEECSSE------ECTTTTTTCTTCCEEEECT-
T ss_pred             -ee-cccccccccccceeEEcCCC--cceeecc----ccccccccceeccCcee------ecccccccccccccccccc-
Confidence             11 22222356788888888665  2233222    34456667766655432      1112234678899999874 


Q ss_pred             CCcccccchhHHHhccccceEEEeccccceeeeeccceeccccccccccCccEEecCCccchhhcccCCCcccccCCccE
Q 036269          385 GSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEIERVNIAKEETELFSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKK  464 (623)
Q Consensus       385 ~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~L~~  464 (623)
                       .++. ++...+..|.+|+.+++.+  .++++.        ...+..+.+|+.+.+...  ++.+..  ..+..|++|++
T Consensus       307 -~i~~-I~~~aF~~c~~L~~i~lp~--~v~~I~--------~~aF~~c~~L~~i~lp~~--l~~I~~--~aF~~C~~L~~  370 (394)
T 4fs7_A          307 -SVKF-IGEEAFESCTSLVSIDLPY--LVEEIG--------KRSFRGCTSLSNINFPLS--LRKIGA--NAFQGCINLKK  370 (394)
T ss_dssp             -TCCE-ECTTTTTTCTTCCEECCCT--TCCEEC--------TTTTTTCTTCCEECCCTT--CCEECT--TTBTTCTTCCE
T ss_pred             -ccce-echhhhcCCCCCCEEEeCC--cccEEh--------HHhccCCCCCCEEEECcc--ccEehH--HHhhCCCCCCE
Confidence             4554 4445578899999999964  477763        446677899999999753  666532  34567899999


Q ss_pred             EEEEcCCCcceeccCcccCcccchhh
Q 036269          465 IRVVFCDELRQVFPANLGKKAAAEEM  490 (623)
Q Consensus       465 L~l~~C~~l~~~~~~~l~~~~~L~~l  490 (623)
                      +.+..  .++.. ...+..|++|+.+
T Consensus       371 i~lp~--~~~~~-~~~F~~c~~L~~I  393 (394)
T 4fs7_A          371 VELPK--RLEQY-RYDFEDTTKFKWI  393 (394)
T ss_dssp             EEEEG--GGGGG-GGGBCTTCEEEEE
T ss_pred             EEECC--CCEEh-hheecCCCCCcEE
Confidence            99975  34444 5667788888865

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.72  E-value=2.9e-08  Score=98.86  Aligned_cols=94  Identities=18%  Similarity=0.128  Sum_probs=42.4

Q ss_pred             EccCC-CCCCCChhhHhCCCcccEEEccC-CcccccCCCc-hhhhccccCcEEeccCCcCCCCc--ccccCCcCCcEEEc
Q 036269           64 FLQKN-DLLDIPDPFFQGMKDLKVLDLGG-SGVFSLFSLP-SSLSFLINLRTLSLHDCQHFGDL--SLIGELSLLEILDL  138 (623)
Q Consensus        64 ~l~~~-~~~~l~~~~~~~l~~Lr~L~l~~-~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~L~~L~l  138 (623)
                      +++++ .+..+|.  +..+++|++|+|++ |.+   ..+| ..|..+++|++|++++|. +..+  ..+.++++|++|+|
T Consensus        14 ~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l---~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l   87 (347)
T 2ifg_A           14 RCTRDGALDSLHH--LPGAENLTELYIENQQHL---QHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNL   87 (347)
T ss_dssp             ECCSSCCCTTTTT--SCSCSCCSEEECCSCSSC---CEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEEC
T ss_pred             EcCCCCCCCccCC--CCCCCCeeEEEccCCCCC---CCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeC
Confidence            44443 3444444  24444444444443 444   2222 234444444444444444 4333  23445555555555


Q ss_pred             CCCCCccccccccCCCccCEEeccC
Q 036269          139 SESDVSEIPVSFGRLGHLRLLDLTD  163 (623)
Q Consensus       139 ~~~~i~~lp~~i~~l~~L~~L~l~~  163 (623)
                      ++|.++.+|..+.....|++|++.+
T Consensus        88 ~~N~l~~~~~~~~~~~~L~~l~l~~  112 (347)
T 2ifg_A           88 SFNALESLSWKTVQGLSLQELVLSG  112 (347)
T ss_dssp             CSSCCSCCCSTTTCSCCCCEEECCS
T ss_pred             CCCccceeCHHHcccCCceEEEeeC
Confidence            5555555543332222355555555

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.68  E-value=1.1e-08  Score=88.65  Aligned_cols=92  Identities=15%  Similarity=0.163  Sum_probs=47.1

Q ss_pred             CCccEEEEecCCCcceecchhhhhccCCCCEEEEccCCchhhhhcCCCCcccCcCCCcce-eecCcccceecccCcccce
Q 036269          516 GNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSRCPTLQEIIMNDEGEVGLQGASTEK-ITFPSLFSIQLCLLDSLTC  594 (623)
Q Consensus       516 ~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~-~~l~~L~~L~l~~c~~l~~  594 (623)
                      ..|++|++++|. +++..- ..+.++++|++|++++|+.+++-     ++.++.    .. ...++|++|+|++|+++++
T Consensus        61 ~~L~~LDLs~~~-Itd~GL-~~L~~~~~L~~L~L~~C~~ItD~-----gL~~L~----~~~~~~~~L~~L~Ls~C~~ITD  129 (176)
T 3e4g_A           61 YKIQAIDATDSC-IMSIGF-DHMEGLQYVEKIRLCKCHYIEDG-----CLERLS----QLENLQKSMLEMEIISCGNVTD  129 (176)
T ss_dssp             CCEEEEEEESCC-CCGGGG-GGGTTCSCCCEEEEESCTTCCHH-----HHHHHH----TCHHHHHHCCEEEEESCTTCCH
T ss_pred             ceEeEEeCcCCC-ccHHHH-HHhcCCCCCCEEEeCCCCccCHH-----HHHHHH----hcccccCCCCEEEcCCCCcCCH
Confidence            356666666665 554322 22455666666666666655544     111110    00 0123566666666666665


Q ss_pred             ecCCCCcceeecCCccEEEeccCCCCc
Q 036269          595 FCSSGSHATVEFLALEALQIIDCPGMK  621 (623)
Q Consensus       595 ~~~~~~~~~~~~~~L~~L~i~~c~~l~  621 (623)
                      .+. ..  ...+++|++|++++|++++
T Consensus       130 ~Gl-~~--L~~~~~L~~L~L~~c~~It  153 (176)
T 3e4g_A          130 KGI-IA--LHHFRNLKYLFLSDLPGVK  153 (176)
T ss_dssp             HHH-HH--GGGCTTCCEEEEESCTTCC
T ss_pred             HHH-HH--HhcCCCCCEEECCCCCCCC
Confidence            543 22  2235666666666666654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.63  E-value=5.6e-08  Score=96.74  Aligned_cols=100  Identities=24%  Similarity=0.378  Sum_probs=79.1

Q ss_pred             EEEcccC-CcccccccC-CCCCcceEEccC-CCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEecc
Q 036269           40 GISLMFN-DIHEVHEGL-QCPRLQALFLQK-NDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLH  116 (623)
Q Consensus        40 ~L~l~~~-~~~~l~~~~-~~~~L~~L~l~~-~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~  116 (623)
                      .++.+++ .++.+|. + .+++|+.|+|++ |.+..++...|.++++|++|+|++|.+.  +..|..|.++++|++|+|+
T Consensus        12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~--~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR--FVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC--EECTTGGGSCSCCCEEECC
T ss_pred             EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccc--eeCHHHhcCCcCCCEEeCC
Confidence            4577777 7888888 6 778899999986 8888888777788999999999999884  3444567889999999999


Q ss_pred             CCcCCCCc--ccccCCcCCcEEEcCCCCCc
Q 036269          117 DCQHFGDL--SLIGELSLLEILDLSESDVS  144 (623)
Q Consensus       117 ~~~~l~~i--~~~~~l~~L~~L~l~~~~i~  144 (623)
                      +|. +..+  ..+..+. |++|++.+|.+.
T Consensus        89 ~N~-l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           89 FNA-LESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             SSC-CSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CCc-cceeCHHHcccCC-ceEEEeeCCCcc
Confidence            988 8766  3344444 999999988776

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.51  E-value=2.6e-08  Score=86.23  Aligned_cols=64  Identities=11%  Similarity=0.214  Sum_probs=28.9

Q ss_pred             ccceeecccCcccccccccccCCCcCCCccEEEEeecCCcccccchhHHHh----ccccceEEEecccccee
Q 036269          348 KLEWLMIVDNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQS----FQNLQRLRVEGCELLVS  415 (623)
Q Consensus       348 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~----l~~L~~L~l~~c~~l~~  415 (623)
                      .|+.|++++|. +++.....  ...+++|+.|++++|..+++..-.. +..    +++|++|++++|++|++
T Consensus        62 ~L~~LDLs~~~-Itd~GL~~--L~~~~~L~~L~L~~C~~ItD~gL~~-L~~~~~~~~~L~~L~Ls~C~~ITD  129 (176)
T 3e4g_A           62 KIQAIDATDSC-IMSIGFDH--MEGLQYVEKIRLCKCHYIEDGCLER-LSQLENLQKSMLEMEIISCGNVTD  129 (176)
T ss_dssp             CEEEEEEESCC-CCGGGGGG--GTTCSCCCEEEEESCTTCCHHHHHH-HHTCHHHHHHCCEEEEESCTTCCH
T ss_pred             eEeEEeCcCCC-ccHHHHHH--hcCCCCCCEEEeCCCCccCHHHHHH-HHhcccccCCCCEEEcCCCCcCCH
Confidence            45555555554 43322111  1245555555555555555432222 222    23455555555555444

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.40  E-value=3.7e-07  Score=90.33  Aligned_cols=59  Identities=15%  Similarity=0.203  Sum_probs=26.4

Q ss_pred             hhhhccccCcEEeccCCcCCCCcccccCCcCCcEEEcCCCCCcc-ccccc--cCCCccCEEecc
Q 036269          102 SSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVSE-IPVSF--GRLGHLRLLDLT  162 (623)
Q Consensus       102 ~~~~~l~~L~~L~l~~~~~l~~i~~~~~l~~L~~L~l~~~~i~~-lp~~i--~~l~~L~~L~l~  162 (623)
                      ..+..+|+|+.|++++|..+ .+..+ .+++|++|++..+.+.. ....+  .++++|++|+++
T Consensus       166 ~ll~~~P~L~~L~L~g~~~l-~l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          166 PVLDAMPLLNNLKIKGTNNL-SIGKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY  227 (362)
T ss_dssp             HHHHTCTTCCEEEEECCBTC-BCCSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred             HHHhcCCCCcEEEEeCCCCc-eeccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence            33445555666666554211 11112 24556666655554431 11122  245556665553

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.40  E-value=3.7e-05  Score=77.64  Aligned_cols=133  Identities=13%  Similarity=0.228  Sum_probs=72.5

Q ss_pred             ccccccC--CCC-CcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCc-hhhhccccCcEEeccCCcCCCCc
Q 036269           49 HEVHEGL--QCP-RLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLP-SSLSFLINLRTLSLHDCQHFGDL  124 (623)
Q Consensus        49 ~~l~~~~--~~~-~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~l~~i  124 (623)
                      +.+.+..  ++. .|+.+.+... ++.+...+|.+|++|+.+.+..+.-.+...+. .+|..+.+|+.+.+..+  +..+
T Consensus        52 t~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I  128 (394)
T 4gt6_A           52 SKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEI  128 (394)
T ss_dssp             EEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEE
T ss_pred             eEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--ccee
Confidence            3444433  443 4777777543 55666667777888888777654311003333 34666777776665543  3344


Q ss_pred             --ccccCCcCCcEEEcCCCCCcccc-ccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecc
Q 036269          125 --SLIGELSLLEILDLSESDVSEIP-VSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSK  188 (623)
Q Consensus       125 --~~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~  188 (623)
                        ..+..+.+|+.+.+..+ +..++ ..+..+..|+.+.+..  .+..+....+.. .+|+.+.+..
T Consensus       129 ~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~--~~~~I~~~aF~~-~~l~~i~ip~  191 (394)
T 4gt6_A          129 DSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPD--SVTAIEERAFTG-TALTQIHIPA  191 (394)
T ss_dssp             CTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTT-CCCSEEEECT
T ss_pred             hhhhhhhhcccccccccce-eeeecccceecccccccccccc--eeeEeccccccc-cceeEEEECC
Confidence              45566677777776543 23232 3455666677666654  244444443332 4566665543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.38  E-value=2.8e-07  Score=91.25  Aligned_cols=158  Identities=20%  Similarity=0.205  Sum_probs=88.9

Q ss_pred             CCCCcceEEccCCCCC---------CCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCCcCCCC--c
Q 036269           56 QCPRLQALFLQKNDLL---------DIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGD--L  124 (623)
Q Consensus        56 ~~~~L~~L~l~~~~~~---------~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~--i  124 (623)
                      .+++|+.|.+.+....         .-...++..+|+|+.|+++++.-   ..++. + .+++|+.|++..|. +..  +
T Consensus       137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~---l~l~~-~-~~~~L~~L~L~~~~-l~~~~l  210 (362)
T 2ra8_A          137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNN---LSIGK-K-PRPNLKSLEIISGG-LPDSVV  210 (362)
T ss_dssp             HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBT---CBCCS-C-BCTTCSEEEEECSB-CCHHHH
T ss_pred             hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCC---ceecc-c-cCCCCcEEEEecCC-CChHHH
Confidence            5667777777554321         01224457778888888877632   23333 2 36788888887776 532  2


Q ss_pred             cccc--CCcCCcEEEcCCC--C------Cccccccc--cCCCccCEEeccCCCCCCcCchhhh--hccccCcEEEecccc
Q 036269          125 SLIG--ELSLLEILDLSES--D------VSEIPVSF--GRLGHLRLLDLTDCYNLELIPRGVL--SRLRKLEELYMSKTF  190 (623)
Q Consensus       125 ~~~~--~l~~L~~L~l~~~--~------i~~lp~~i--~~l~~L~~L~l~~~~~~~~l~~~~~--~~l~~L~~L~l~~~~  190 (623)
                      ..+.  .+++|++|+|+.+  .      +..+...+  ..+++|++|++.+|......+..+.  ..+++|++|+++.|.
T Consensus       211 ~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~  290 (362)
T 2ra8_A          211 EDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV  290 (362)
T ss_dssp             HHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC
T ss_pred             HHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC
Confidence            3333  6788888877421  1      21222222  2467888888877543322222211  246788888887776


Q ss_pred             cccccccccccccccccccccCCCCccEEEeecCCC
Q 036269          191 CHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEG  226 (623)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  226 (623)
                      +...-       ...+...+..+++|+.|++++|.+
T Consensus       291 L~d~G-------~~~L~~~L~~l~~L~~L~L~~n~i  319 (362)
T 2ra8_A          291 LTDEG-------ARLLLDHVDKIKHLKFINMKYNYL  319 (362)
T ss_dssp             CBHHH-------HHHHHTTHHHHTTCSEEECCSBBC
T ss_pred             CChHH-------HHHHHhhcccCCcceEEECCCCcC
Confidence            52100       012333445677888888887764

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.20  E-value=7.9e-05  Score=75.20  Aligned_cols=111  Identities=17%  Similarity=0.252  Sum_probs=73.2

Q ss_pred             CCChhhHhCCC-cccEEEccCCcccccCCCc-hhhhccccCcEEeccCCc--CCCCc--ccccCCcCCcEEEcCCCCCcc
Q 036269           72 DIPDPFFQGMK-DLKVLDLGGSGVFSLFSLP-SSLSFLINLRTLSLHDCQ--HFGDL--SLIGELSLLEILDLSESDVSE  145 (623)
Q Consensus        72 ~l~~~~~~~l~-~Lr~L~l~~~~~~~~~~lp-~~~~~l~~L~~L~l~~~~--~l~~i--~~~~~l~~L~~L~l~~~~i~~  145 (623)
                      .+...+|.+++ .|+.+.+..+ +   +.+. .+|.+|.+|+.+.+..+.  .++.+  ..+.++.+|+.+.+..+ ++.
T Consensus        53 ~Ig~~aF~~~~~~L~sI~iP~s-v---t~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~  127 (394)
T 4gt6_A           53 KIGDRVFCNYKYVLTSVQIPDT-V---TEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTE  127 (394)
T ss_dssp             EECTTTTTTCCSCCCEEEECTT-C---CEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSE
T ss_pred             EcCHhhccCCCCcCEEEEECCC-e---eEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cce
Confidence            56666788875 5899888754 4   3333 568889999999887652  24445  45667777777766544 344


Q ss_pred             cc-ccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccc
Q 036269          146 IP-VSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKT  189 (623)
Q Consensus       146 lp-~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~  189 (623)
                      ++ ..+..+.+|+.+.+..  ....++...+..+..|+.+.+..+
T Consensus       128 I~~~aF~~c~~L~~i~lp~--~~~~I~~~~F~~c~~L~~i~~~~~  170 (394)
T 4gt6_A          128 IDSEAFHHCEELDTVTIPE--GVTSVADGMFSYCYSLHTVTLPDS  170 (394)
T ss_dssp             ECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT
T ss_pred             ehhhhhhhhcccccccccc--eeeeecccceecccccccccccce
Confidence            43 3466777888887764  345566555777777877777543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.05  E-value=4.1e-06  Score=74.50  Aligned_cols=63  Identities=16%  Similarity=0.197  Sum_probs=29.3

Q ss_pred             CCCCcceEEccCC-CCCC-----CChhhHhCCCcccEEEccCCccccc--CCCchhhhccccCcEEeccCCc
Q 036269           56 QCPRLQALFLQKN-DLLD-----IPDPFFQGMKDLKVLDLGGSGVFSL--FSLPSSLSFLINLRTLSLHDCQ  119 (623)
Q Consensus        56 ~~~~L~~L~l~~~-~~~~-----l~~~~~~~l~~Lr~L~l~~~~~~~~--~~lp~~~~~l~~L~~L~l~~~~  119 (623)
                      ..+.|++|++++| .+.+     +.. .+...+.|++|++++|.+...  ..+...+...++|++|++++|.
T Consensus        34 ~~~~L~~L~L~~n~~i~~~g~~~l~~-~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~  104 (185)
T 1io0_A           34 NDPDLEEVNLNNIMNIPVPTLKACAE-ALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF  104 (185)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHH-HHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred             cCCCCCEEEecCCCCCCHHHHHHHHH-HHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence            3455666666665 5431     111 134455566666666655310  0122233344455555555555

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.99  E-value=6.2e-06  Score=73.33  Aligned_cols=113  Identities=13%  Similarity=0.064  Sum_probs=72.5

Q ss_pred             hHhCCCcccEEEccCC-ccccc--CCCchhhhccccCcEEeccCCcCCCCc------ccccCCcCCcEEEcCCCCCcc--
Q 036269           77 FFQGMKDLKVLDLGGS-GVFSL--FSLPSSLSFLINLRTLSLHDCQHFGDL------SLIGELSLLEILDLSESDVSE--  145 (623)
Q Consensus        77 ~~~~l~~Lr~L~l~~~-~~~~~--~~lp~~~~~l~~L~~L~l~~~~~l~~i------~~~~~l~~L~~L~l~~~~i~~--  145 (623)
                      ++...+.|++|++++| .+...  ..+...+...++|++|++++|. +++-      ..+...++|++|++++|.+..  
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g  109 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNFISGSG  109 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence            3567888999999888 77410  1233445566788888888888 7442      345556778888888888762  


Q ss_pred             ---ccccccCCCccCEEec--cCCCCCCcCch----hhhhccccCcEEEeccccc
Q 036269          146 ---IPVSFGRLGHLRLLDL--TDCYNLELIPR----GVLSRLRKLEELYMSKTFC  191 (623)
Q Consensus       146 ---lp~~i~~l~~L~~L~l--~~~~~~~~l~~----~~~~~l~~L~~L~l~~~~~  191 (623)
                         +...+...++|++|++  ++ +.++....    ..+...+.|++|++++|.+
T Consensus       110 ~~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          110 ILALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence               4556667777888888  55 34433211    1234446677777766655

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.94  E-value=8.6e-06  Score=76.19  Aligned_cols=78  Identities=21%  Similarity=0.248  Sum_probs=40.6

Q ss_pred             ccccCcEEeccCCcCCCCcc----cccCCcCCcEEEcCCCCCccccccccCCC--ccCEEeccCCCCCCcCc------hh
Q 036269          106 FLINLRTLSLHDCQHFGDLS----LIGELSLLEILDLSESDVSEIPVSFGRLG--HLRLLDLTDCYNLELIP------RG  173 (623)
Q Consensus       106 ~l~~L~~L~l~~~~~l~~i~----~~~~l~~L~~L~l~~~~i~~lp~~i~~l~--~L~~L~l~~~~~~~~l~------~~  173 (623)
                      ++++|++|++++|. +..+.    .+..+++|+.|+|++|.++.+. .+..+.  +|+.|++++|.....+|      ..
T Consensus       168 ~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          168 NIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence            45566666666665 54432    2335566666666666655442 233333  66666666644333333      12


Q ss_pred             hhhccccCcEEE
Q 036269          174 VLSRLRKLEELY  185 (623)
Q Consensus       174 ~~~~l~~L~~L~  185 (623)
                      ++..+++|+.|+
T Consensus       246 il~~~P~L~~LD  257 (267)
T 3rw6_A          246 IRERFPKLLRLD  257 (267)
T ss_dssp             HHHHCTTCCEES
T ss_pred             HHHHCcccCeEC
Confidence            355666666664

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.74  E-value=1.3e-05  Score=75.02  Aligned_cols=61  Identities=23%  Similarity=0.378  Sum_probs=34.1

Q ss_pred             cCCcCCcEEEcCCCCCccc---cccccCCCccCEEeccCCCCCCcCchhhhhccc--cCcEEEeccccc
Q 036269          128 GELSLLEILDLSESDVSEI---PVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLR--KLEELYMSKTFC  191 (623)
Q Consensus       128 ~~l~~L~~L~l~~~~i~~l---p~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~--~L~~L~l~~~~~  191 (623)
                      .++++|+.|+|++|.++.+   |..+.++++|+.|++++ +.+..+..  +..+.  +|++|++.+|.+
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~~~--l~~l~~l~L~~L~L~~Npl  232 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG-NELKSERE--LDKIKGLKLEELWLDGNSL  232 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTT-SCCCSGGG--GGGGTTSCCSEEECTTSTT
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCC-CccCCchh--hhhcccCCcceEEccCCcC
Confidence            3456666666666666543   23445666666666666 34444421  33333  666666666655

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.59  E-value=0.0049  Score=61.53  Aligned_cols=34  Identities=9%  Similarity=0.231  Sum_probs=19.1

Q ss_pred             CCCcceEEccCCCCCCCChhhHhCCCcccEEEccC
Q 036269           57 CPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGG   91 (623)
Q Consensus        57 ~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~   91 (623)
                      ..+|+.+.+.. .++.++..+|.+|.+|+.+++..
T Consensus        45 ~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~   78 (379)
T 4h09_A           45 RDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAS   78 (379)
T ss_dssp             GGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECT
T ss_pred             ccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCC
Confidence            34566665542 23455555566666666666643

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.50  E-value=0.0091  Score=59.57  Aligned_cols=36  Identities=6%  Similarity=0.244  Sum_probs=19.4

Q ss_pred             HhCCCcccEEEccCCcccccCCCc-hhhhccccCcEEeccC
Q 036269           78 FQGMKDLKVLDLGGSGVFSLFSLP-SSLSFLINLRTLSLHD  117 (623)
Q Consensus        78 ~~~l~~Lr~L~l~~~~~~~~~~lp-~~~~~l~~L~~L~l~~  117 (623)
                      +....+|+.+.+... +   +.++ .+|.+|.+|+.+++..
T Consensus        42 ~~~~~~i~~v~ip~~-v---t~Ig~~aF~~C~~L~~I~lp~   78 (379)
T 4h09_A           42 YKDRDRISEVRVNSG-I---TSIGEANFNSCYNMTKVTVAS   78 (379)
T ss_dssp             GGGGGGCSEEEECTT-E---EEECTTTTTTCTTCCEEEECT
T ss_pred             cccccCCEEEEeCCC-c---cChHHHHhhCCCCCCEEEeCC
Confidence            455566666666432 3   2333 3456666666666643

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.41  E-value=0.0053  Score=50.39  Aligned_cols=54  Identities=15%  Similarity=0.237  Sum_probs=37.1

Q ss_pred             EEEcccCCcc--cccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcc
Q 036269           40 GISLMFNDIH--EVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGV   94 (623)
Q Consensus        40 ~L~l~~~~~~--~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~   94 (623)
                      .++-+++.++  .+|..+. ++++.|+|++|.+..++..+|..+++|++|+|.+|.+
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp-~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP-VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC-TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCCCC-cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            5666666666  6665432 3577777777777777777777777777777777765

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.15  E-value=0.023  Score=49.96  Aligned_cols=62  Identities=11%  Similarity=0.052  Sum_probs=27.1

Q ss_pred             CCcceEEccCC-CCCC----CChhhHhCCCcccEEEccCCccccc--CCCchhhhccccCcEEeccCCc
Q 036269           58 PRLQALFLQKN-DLLD----IPDPFFQGMKDLKVLDLGGSGVFSL--FSLPSSLSFLINLRTLSLHDCQ  119 (623)
Q Consensus        58 ~~L~~L~l~~~-~~~~----l~~~~~~~l~~Lr~L~l~~~~~~~~--~~lp~~~~~l~~L~~L~l~~~~  119 (623)
                      +.|+.|+|+++ .+.+    .....+..-+.|+.|+|++|.+...  ..+...+..-+.|++|+++.|.
T Consensus        41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~  109 (197)
T 1pgv_A           41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF  109 (197)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred             CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence            45666666553 4331    0111224445555555555555310  1122233334455555555554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=94.76  E-value=0.05  Score=44.46  Aligned_cols=54  Identities=24%  Similarity=0.362  Sum_probs=33.9

Q ss_pred             EEEcCCCCCc--cccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccccc
Q 036269          135 ILDLSESDVS--EIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFC  191 (623)
Q Consensus       135 ~L~l~~~~i~--~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~  191 (623)
                      .++-+++.++  .+|..+.  ++|++|++++ +.++.++.+++..+++|+.|++.+|.+
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCC-CcCCccChhhhhhccccCEEEecCCCe
Confidence            4555566665  6664432  3567777777 556667666666777777777776644

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=94.63  E-value=0.051  Score=47.74  Aligned_cols=86  Identities=16%  Similarity=0.110  Sum_probs=58.0

Q ss_pred             HhCCCcccEEEccCC-ccccc--CCCchhhhccccCcEEeccCCcCCCCc------ccccCCcCCcEEEcCCCCCc----
Q 036269           78 FQGMKDLKVLDLGGS-GVFSL--FSLPSSLSFLINLRTLSLHDCQHFGDL------SLIGELSLLEILDLSESDVS----  144 (623)
Q Consensus        78 ~~~l~~Lr~L~l~~~-~~~~~--~~lp~~~~~l~~L~~L~l~~~~~l~~i------~~~~~l~~L~~L~l~~~~i~----  144 (623)
                      ...-+.|++|+++++ .+...  ..+-..+..-..|+.|++++|. +++-      ..+..-..|++|+|++|.|.    
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga  115 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESNFLTPELL  115 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence            456788999999875 66310  1233455566789999999888 7543      34555578888898888887    


Q ss_pred             -cccccccCCCccCEEeccCC
Q 036269          145 -EIPVSFGRLGHLRLLDLTDC  164 (623)
Q Consensus       145 -~lp~~i~~l~~L~~L~l~~~  164 (623)
                       .+-+.+..-+.|+.|+++++
T Consensus       116 ~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          116 ARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHHhhCCceeEEECCCC
Confidence             23345555567888888753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	623
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.004
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	6e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.004

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 63.9 bits (154), Expect = 2e-11
 Identities = 37/188 (19%), Positives = 73/188 (38%), Gaps = 25/188 (13%)

Query: 18  FLIKAGVELKDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPF 77
            LI    ++ D   +    +L  +SL  N + ++        L  L L  N + ++    
Sbjct: 201 SLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP-- 258

Query: 78  FQGMKDLKVLDLGGSGVFSLFSLPSSLSF------------------LINLRTLSLHDCQ 119
             G+  L  L LG + + ++  L    +                   L NL  L+L+   
Sbjct: 259 LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN 318

Query: 120 HFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLR 179
              D+S +  L+ L+ L  + + VS++  S   L ++  L        +L P   L+ L 
Sbjct: 319 -ISDISPVSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQISDLTP---LANLT 373

Query: 180 KLEELYMS 187
           ++ +L ++
Sbjct: 374 RITQLGLN 381

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 8e-05
 Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 6/89 (6%)

Query: 29  WPSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLD 88
              I+  ++LT ++L FN+I ++       +LQ LF   N + D+       + ++  L 
Sbjct: 300 ISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSS--LANLTNINWLS 357

Query: 89  LGGSGVFSLFSLPSSLSFLINLRTLSLHD 117
            G +      S  + L+ L  +  L L+D
Sbjct: 358 AGHN----QISDLTPLANLTRITQLGLND 382

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.3 bits (111), Expect = 3e-06
 Identities = 31/170 (18%), Positives = 61/170 (35%), Gaps = 29/170 (17%)

Query: 37  DLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFS 96
            L  +      + +V + L  P    L LQ N + +I D  F+ +K+L  L L  + +  
Sbjct: 11  HLRVVQCSDLGLEKVPKDLP-PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 69

Query: 97  LFSLPSSLSFLINLRTLSLHDCQ-------------------------HFGDLSLIGELS 131
           +   P + + L+ L  L L   Q                              + + ++ 
Sbjct: 70  I--SPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMI 127

Query: 132 LLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKL 181
           ++E+             +F  +  L  + + D  N+  IP+G+   L +L
Sbjct: 128 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGLPPSLTEL 176

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.3 bits (85), Expect = 0.004
 Identities = 22/159 (13%), Positives = 49/159 (30%), Gaps = 29/159 (18%)

Query: 29  WPSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLD 88
             +    + L+ I +   +I  + +GL  P L  L L  N +  +     +G+ +L  L 
Sbjct: 143 NGAFQGMKKLSYIRIADTNITTIPQGL-PPSLTELHLDGNKITKVDAASLKGLNNLAKLG 201

Query: 89  LGGSGV---------------------FSLFSLPSSLSFLINLRTLSLHDCQ-------H 120
           L  + +                       L  +P  L+    ++ + LH+          
Sbjct: 202 LSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSND 261

Query: 121 FGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLL 159
           F       + +    + L  + V    +       + + 
Sbjct: 262 FCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR 300

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.8 bits (104), Expect = 2e-05
 Identities = 15/115 (13%), Positives = 30/115 (26%), Gaps = 9/115 (7%)

Query: 44  MFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSS 103
           +       +       L       N   +           L+ L++  +    L  LP+ 
Sbjct: 246 LTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN---KLIELPAL 302

Query: 104 LSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRL 158
                 L  L            +      L+ L +  + + E P     +  LR+
Sbjct: 303 PP---RLERLIASFNHL---AEVPELPQNLKQLHVEYNPLREFPDIPESVEDLRM 351

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.2 bits (88), Expect = 6e-04
 Identities = 19/103 (18%), Positives = 36/103 (34%), Gaps = 5/103 (4%)

Query: 85  KVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVS 144
           +VL L         ++   L  L+ +  L L   +       +  L  LE+L  S++ + 
Sbjct: 1   RVLHLAHKD----LTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE 56

Query: 145 EIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMS 187
            +      L  L+ L L +    +      L    +L  L + 
Sbjct: 57  NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ 98

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 6e-04
 Identities = 18/117 (15%), Positives = 37/117 (31%), Gaps = 23/117 (19%)

Query: 83  DLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESD 142
           D++ LD+      S       L  L   + + L DC                   L+E+ 
Sbjct: 3   DIQSLDIQCEE-LSDARWAELLPLLQQCQVVRLDDCG------------------LTEAR 43

Query: 143 VSEIPVSFGRLGHLRLLDLTDCY----NLELIPRGVLSRLRKLEELYMSKTFCHWQF 195
             +I  +      L  L+L         +  + +G+ +   K+++L +         
Sbjct: 44  CKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAG 100

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 37.4 bits (85), Expect = 0.004
 Identities = 9/41 (21%), Positives = 19/41 (46%)

Query: 99  SLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLS 139
           +LP  L+ L  L +L++      G++   G L   ++   +
Sbjct: 259 TLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYA 299

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	623
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.88
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.87
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.76
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.75
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.74
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.74
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.72
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.71
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.71
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.7
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.69
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.69
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.67
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.62
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.55
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.54
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.5
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.44
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.43
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.42
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.41
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.4
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.39
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.31
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.26
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.24
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.19
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.09
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.95
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.88
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.85
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.62
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.81
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.75
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.06
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.96
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.31
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.19

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.88  E-value=3.7e-21  Score=193.69  Aligned_cols=85  Identities=15%  Similarity=0.289  Sum_probs=46.7

Q ss_pred             CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCCcCCCCcccccCCcCCcE
Q 036269           56 QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEI  135 (623)
Q Consensus        56 ~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~i~~~~~l~~L~~  135 (623)
                      .+.+|++|+++++.+.++..  +.++++|++|++++|.+   +.+|. +.++++|++|++++|. +.++..++++++|+.
T Consensus        42 ~l~~l~~L~l~~~~I~~l~g--l~~L~nL~~L~Ls~N~l---~~l~~-l~~L~~L~~L~L~~n~-i~~i~~l~~l~~L~~  114 (384)
T d2omza2          42 DLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQL---TDITP-LKNLTKLVDILMNNNQ-IADITPLANLTNLTG  114 (384)
T ss_dssp             HHTTCCEEECCSSCCCCCTT--GGGCTTCCEEECCSSCC---CCCGG-GTTCTTCCEEECCSSC-CCCCGGGTTCTTCCE
T ss_pred             HhCCCCEEECCCCCCCCccc--cccCCCCCEEeCcCCcC---CCCcc-ccCCcccccccccccc-ccccccccccccccc
Confidence            34455566666655555432  35566666666666655   34442 5555666666666655 555544555556666


Q ss_pred             EEcCCCCCcccc
Q 036269          136 LDLSESDVSEIP  147 (623)
Q Consensus       136 L~l~~~~i~~lp  147 (623)
                      |+++++.++.++
T Consensus       115 L~~~~~~~~~~~  126 (384)
T d2omza2         115 LTLFNNQITDID  126 (384)
T ss_dssp             EECCSSCCCCCG
T ss_pred             cccccccccccc
Confidence            665555555443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.87  E-value=1.5e-20  Score=189.29  Aligned_cols=343  Identities=20%  Similarity=0.239  Sum_probs=200.5

Q ss_pred             CCCCCCCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCc
Q 036269           32 INTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLR  111 (623)
Q Consensus        32 ~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~  111 (623)
                      ...+.+++.|+++++.++++.....+++|++|++++|.++++++  ++++++|++|++++|.+   ..++. +..+++|+
T Consensus        40 ~~~l~~l~~L~l~~~~I~~l~gl~~L~nL~~L~Ls~N~l~~l~~--l~~L~~L~~L~L~~n~i---~~i~~-l~~l~~L~  113 (384)
T d2omza2          40 QTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQI---ADITP-LANLTNLT  113 (384)
T ss_dssp             HHHHTTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC---CCCGG-GTTCTTCC
T ss_pred             HHHhCCCCEEECCCCCCCCccccccCCCCCEEeCcCCcCCCCcc--ccCCccccccccccccc---ccccc-cccccccc
Confidence            34567899999999999988544489999999999999998876  79999999999999999   55554 78999999


Q ss_pred             EEeccCCcCCCCcccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccccc
Q 036269          112 TLSLHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFC  191 (623)
Q Consensus       112 ~L~l~~~~~l~~i~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~  191 (623)
                      .|++.++. +.++........+.......+.+..+... ......+......  .......  +.............+..
T Consensus       114 ~L~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~  187 (384)
T d2omza2         114 GLTLFNNQ-ITDIDPLKNLTNLNRLELSSNTISDISAL-SGLTSLQQLSFGN--QVTDLKP--LANLTTLERLDISSNKV  187 (384)
T ss_dssp             EEECCSSC-CCCCGGGTTCTTCSEEEEEEEEECCCGGG-TTCTTCSEEEEEE--SCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             cccccccc-ccccccccccccccccccccccccccccc-ccccccccccccc--ccchhhh--hcccccccccccccccc
Confidence            99999988 77775566666777777666654433211 1111111111110  0111111  22233333333332221


Q ss_pred             ccccccccccccccccccccCCCCccEEEeecCCCccCCCcccccCccEEEEEeCCCCCCCcchhhhhhhhcccccccce
Q 036269          192 HWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSDMSFQNLTSFSITIGGPEEVPLSDFIEVFSRKFKKRCSRA  271 (623)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~  271 (623)
                                   ........+++++.++++.+.+..++.....++|+++++.++.....+                   
T Consensus       188 -------------~~~~~~~~l~~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~~~-------------------  235 (384)
T d2omza2         188 -------------SDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-------------------  235 (384)
T ss_dssp             -------------CCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG-------------------
T ss_pred             -------------ccccccccccccceeeccCCccCCCCcccccCCCCEEECCCCCCCCcc-------------------
Confidence                         122334455566666666665555544444556666665544322110                   


Q ss_pred             eeeccccccccchHHHHHHHhhceeEeecccCCcccccccccccCccCccEEEEecccCceeecccccccccccccccce
Q 036269          272 MGLSQDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNEMKYLLNSLERTLRVTLLKLEW  351 (623)
Q Consensus       272 l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~  351 (623)
                                    .+.. +++|+.+++.++.. .... .+  ..+++|+.++++++ .+..+.      ....++.++.
T Consensus       236 --------------~l~~-l~~L~~L~l~~n~l-~~~~-~~--~~~~~L~~L~l~~~-~l~~~~------~~~~~~~l~~  289 (384)
T d2omza2         236 --------------TLAS-LTNLTDLDLANNQI-SNLA-PL--SGLTKLTELKLGAN-QISNIS------PLAGLTALTN  289 (384)
T ss_dssp             --------------GGGG-CTTCSEEECCSSCC-CCCG-GG--TTCTTCSEEECCSS-CCCCCG------GGTTCTTCSE
T ss_pred             --------------hhhc-ccccchhccccCcc-CCCC-cc--cccccCCEeeccCc-ccCCCC------cccccccccc
Confidence                          0000 14566666665542 2221 12  44566777777666 333332      2334556666


Q ss_pred             eecccCcccccccccccCCCcCCCccEEEEeecCCcccccchhHHHhccccceEEEeccccceeeeeccceecccccccc
Q 036269          352 LMIVDNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEIERVNIAKEETEL  431 (623)
Q Consensus       352 L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~  431 (623)
                      +.+.++. ++.+    .....+++++.|+++++ .+++. +.  +..+++|++|++++| .++++         + .+..
T Consensus       290 l~~~~n~-l~~~----~~~~~~~~l~~L~ls~n-~l~~l-~~--l~~l~~L~~L~L~~n-~l~~l---------~-~l~~  349 (384)
T d2omza2         290 LELNENQ-LEDI----SPISNLKNLTYLTLYFN-NISDI-SP--VSSLTKLQRLFFANN-KVSDV---------S-SLAN  349 (384)
T ss_dssp             EECCSSC-CSCC----GGGGGCTTCSEEECCSS-CCSCC-GG--GGGCTTCCEEECCSS-CCCCC---------G-GGGG
T ss_pred             ccccccc-cccc----cccchhcccCeEECCCC-CCCCC-cc--cccCCCCCEEECCCC-CCCCC---------h-hHcC
Confidence            6666554 2211    11235567777777764 55553 22  456777777777773 66654         2 3456


Q ss_pred             ccCccEEecCCccchhhcccCCCcccccCCccEEEEEc
Q 036269          432 FSSLEKLTLIGLPRMTDIWKGDTQFVSLHDLKKIRVVF  469 (623)
Q Consensus       432 ~~~L~~L~l~~c~~l~~i~~~~~~~~~l~~L~~L~l~~  469 (623)
                      +++|++|++++| .++++    ..+..+++|+.|+|++
T Consensus       350 l~~L~~L~l~~N-~l~~l----~~l~~l~~L~~L~L~~  382 (384)
T d2omza2         350 LTNINWLSAGHN-QISDL----TPLANLTRITQLGLND  382 (384)
T ss_dssp             CTTCCEEECCSS-CCCBC----GGGTTCTTCSEEECCC
T ss_pred             CCCCCEEECCCC-cCCCC----hhhccCCCCCEeeCCC
Confidence            777777777777 45554    2355677777777764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=5.2e-18  Score=160.41  Aligned_cols=194  Identities=22%  Similarity=0.207  Sum_probs=150.0

Q ss_pred             CCCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEec
Q 036269           36 EDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSL  115 (623)
Q Consensus        36 ~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l  115 (623)
                      ..+..++.+++.++.+|+.+. +++++|+|++|.+..++...|.++++|++|++++|.+   ..+|. +..+++|++|++
T Consensus        10 ~~~~~v~C~~~~L~~iP~~lp-~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l---~~l~~-~~~l~~L~~L~L   84 (266)
T d1p9ag_          10 ASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL---TKLQV-DGTLPVLGTLDL   84 (266)
T ss_dssp             TTCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC---CEEEC-CSCCTTCCEEEC
T ss_pred             CCCeEEEccCCCCCeeCcCcC-cCCCEEECcCCcCCCcCHHHhhccccccccccccccc---ccccc-cccccccccccc
Confidence            345556777778888876553 5788888888888877777778888888888888888   55553 467888888888


Q ss_pred             cCCcCCCCc-ccccCCcCCcEEEcCCCCCcccc-ccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccccccc
Q 036269          116 HDCQHFGDL-SLIGELSLLEILDLSESDVSEIP-VSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHW  193 (623)
Q Consensus       116 ~~~~~l~~i-~~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~  193 (623)
                      ++|. +..+ ..+..+++|++|+++++.+..++ ..+..+.++++|++.+ +.+..++...+..+++++.+++++|.+. 
T Consensus        85 s~N~-l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~-n~l~~l~~~~~~~l~~l~~l~l~~N~l~-  161 (266)
T d1p9ag_          85 SHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNNLT-  161 (266)
T ss_dssp             CSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECTTSCCS-
T ss_pred             cccc-ccccccccccccccccccccccccceeeccccccccccccccccc-cccceeccccccccccchhccccccccc-
Confidence            8887 7655 66778888888888888887654 4566788888888888 5667777776778888888888888773 


Q ss_pred             ccccccccccccccccccCCCCccEEEeecCCCccCCCc-ccccCccEEEEEeCC
Q 036269          194 QFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSD-MSFQNLTSFSITIGG  247 (623)
Q Consensus       194 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~  247 (623)
                                ...+..++.+++|+.|++++|.+..+|.. ..+++|+.+++++++
T Consensus       162 ----------~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         162 ----------ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             ----------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred             ----------ccCccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCC
Confidence                      23344577888888999988888888776 677888888888775

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.75  E-value=1.2e-16  Score=154.51  Aligned_cols=180  Identities=22%  Similarity=0.325  Sum_probs=89.2

Q ss_pred             CCCCCCCCCCCCCCcEEEcccCCccccccc-C-CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCch
Q 036269           25 ELKDWPSINTFEDLTGISLMFNDIHEVHEG-L-QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPS  102 (623)
Q Consensus        25 ~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~  102 (623)
                      ++..+|. ...+.+++|++++|.++++++. + .+++|++|++++|.+..+++..|.++++|++|++++|.+   +.+|.
T Consensus        21 ~L~~lP~-~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l---~~l~~   96 (305)
T d1xkua_          21 GLEKVPK-DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL---KELPE   96 (305)
T ss_dssp             CCCSCCC-SCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCC---SBCCS
T ss_pred             CCCccCC-CCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCcc---CcCcc
Confidence            4555553 2335566666666666655542 2 555666666666665555444455566666666666655   44444


Q ss_pred             hhhccccCcEEeccCCcCCCCc--ccccCCcCCcEEEcCCCCCc---cccccccCCCccCEEeccCCCCCCcCchhhhhc
Q 036269          103 SLSFLINLRTLSLHDCQHFGDL--SLIGELSLLEILDLSESDVS---EIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSR  177 (623)
Q Consensus       103 ~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~L~~L~l~~~~i~---~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~  177 (623)
                      .+  ...++.|+..++. +..+  ..+.....++.++...+...   ..+..+..+++|+++++.+| .+..+|..   .
T Consensus        97 ~~--~~~l~~L~~~~n~-l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n-~l~~l~~~---~  169 (305)
T d1xkua_          97 KM--PKTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQG---L  169 (305)
T ss_dssp             SC--CTTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCSS---C
T ss_pred             ch--hhhhhhhhccccc-hhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccC-CccccCcc---c
Confidence            32  3455555555555 4443  23444445555555544332   12234445555555555552 33344432   2


Q ss_pred             cccCcEEEecccccccccccccccccccccccccCCCCccEEEeecCCC
Q 036269          178 LRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEG  226 (623)
Q Consensus       178 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  226 (623)
                      .++|++|++.+|...           ...+..+..++.++.|++++|.+
T Consensus       170 ~~~L~~L~l~~n~~~-----------~~~~~~~~~~~~l~~L~~s~n~l  207 (305)
T d1xkua_         170 PPSLTELHLDGNKIT-----------KVDAASLKGLNNLAKLGLSFNSI  207 (305)
T ss_dssp             CTTCSEEECTTSCCC-----------EECTGGGTTCTTCCEEECCSSCC
T ss_pred             CCccCEEECCCCcCC-----------CCChhHhhccccccccccccccc
Confidence            345555555554431           22233444555555555554443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.74  E-value=7.1e-17  Score=156.19  Aligned_cols=153  Identities=20%  Similarity=0.235  Sum_probs=68.4

Q ss_pred             cEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCC
Q 036269           39 TGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDC  118 (623)
Q Consensus        39 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~  118 (623)
                      +.++-++..++++|..+. +.+++|++++|.+.++++..|.++++|++|++++|.+.  ...|..+.+++          
T Consensus        13 ~~~~C~~~~L~~lP~~l~-~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~--~i~~~~f~~l~----------   79 (305)
T d1xkua_          13 RVVQCSDLGLEKVPKDLP-PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS--KISPGAFAPLV----------   79 (305)
T ss_dssp             TEEECTTSCCCSCCCSCC-TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC--CBCTTTTTTCT----------
T ss_pred             CEEEecCCCCCccCCCCC-CCCCEEECcCCcCCCcChhHhhcccccccccccccccc--ccchhhhhCCC----------
Confidence            334444444455544331 34555555555555444443445555555555555442  11233344444          


Q ss_pred             cCCCCcccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecccccccccccc
Q 036269          119 QHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENE  198 (623)
Q Consensus       119 ~~l~~i~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~  198 (623)
                                   +|++|++++|.++.+|..+  ...++.|...+ +.+..++...+.....++.+....+....     
T Consensus        80 -------------~L~~L~l~~n~l~~l~~~~--~~~l~~L~~~~-n~l~~l~~~~~~~~~~~~~l~~~~n~~~~-----  138 (305)
T d1xkua_          80 -------------KLERLYLSKNQLKELPEKM--PKTLQELRVHE-NEITKVRKSVFNGLNQMIVVELGTNPLKS-----  138 (305)
T ss_dssp             -------------TCCEEECCSSCCSBCCSSC--CTTCCEEECCS-SCCCBBCHHHHTTCTTCCEEECCSSCCCG-----
T ss_pred             -------------ccCEecccCCccCcCccch--hhhhhhhhccc-cchhhhhhhhhhccccccccccccccccc-----
Confidence                         4444445444444444322  23455555544 33444444334444445555444432211     


Q ss_pred             cccccccccccccCCCCccEEEeecCCCccC
Q 036269          199 DDSRSNAKFIELGALSRLTSLHIDIPEGEIM  229 (623)
Q Consensus       199 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  229 (623)
                          .......+..+++|+.+++.++.+..+
T Consensus       139 ----~~~~~~~~~~l~~L~~l~l~~n~l~~l  165 (305)
T d1xkua_         139 ----SGIENGAFQGMKKLSYIRIADTNITTI  165 (305)
T ss_dssp             ----GGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred             ----cCCCccccccccccCccccccCCcccc
Confidence                112223344555566666655554443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=2e-17  Score=156.31  Aligned_cols=185  Identities=22%  Similarity=0.191  Sum_probs=158.9

Q ss_pred             cCCCCCCCCCCCCCCCCcEEEcccCCccccccc-C-CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCC
Q 036269           22 AGVELKDWPSINTFEDLTGISLMFNDIHEVHEG-L-QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFS   99 (623)
Q Consensus        22 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~   99 (623)
                      .+.++..+|. ...+.++.|++++|.++.++.. + .+++|+.|++++|.++.++.  ++.+++|++|++++|.+   ..
T Consensus        18 ~~~~L~~iP~-~lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~--~~~l~~L~~L~Ls~N~l---~~   91 (266)
T d1p9ag_          18 DKRNLTALPP-DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHNQL---QS   91 (266)
T ss_dssp             TTSCCSSCCS-CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECCSSCC---SS
T ss_pred             cCCCCCeeCc-CcCcCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc--ccccccccccccccccc---cc
Confidence            3566778873 2347899999999999998864 3 89999999999999987765  57899999999999999   67


Q ss_pred             CchhhhccccCcEEeccCCcCCCCc--ccccCCcCCcEEEcCCCCCccccc-cccCCCccCEEeccCCCCCCcCchhhhh
Q 036269          100 LPSSLSFLINLRTLSLHDCQHFGDL--SLIGELSLLEILDLSESDVSEIPV-SFGRLGHLRLLDLTDCYNLELIPRGVLS  176 (623)
Q Consensus       100 lp~~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~~l~~~~~~  176 (623)
                      .+..+..+++|++|+++++. +..+  ..+..+.++++|++++|.+..+|. .+..+++|+.+++++ +.+..++.+.+.
T Consensus        92 ~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~-N~l~~~~~~~~~  169 (266)
T d1p9ag_          92 LPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN-NNLTELPAGLLN  169 (266)
T ss_dssp             CCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT-SCCSCCCTTTTT
T ss_pred             cccccccccccccccccccc-cceeeccccccccccccccccccccceeccccccccccchhccccc-ccccccCccccc
Confidence            78888999999999999998 7665  567889999999999999998874 456799999999999 567788877789


Q ss_pred             ccccCcEEEecccccccccccccccccccccccccCCCCccEEEeecCCC
Q 036269          177 RLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEG  226 (623)
Q Consensus       177 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  226 (623)
                      .+++|++|++++|.+            ..++..+..+++|+.|++++|.+
T Consensus       170 ~l~~L~~L~Ls~N~L------------~~lp~~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         170 GLENLDTLLLQENSL------------YTIPKGFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             TCTTCCEEECCSSCC------------CCCCTTTTTTCCCSEEECCSCCB
T ss_pred             cccccceeecccCCC------------cccChhHCCCCCCCEEEecCCCC
Confidence            999999999999988            35667788899999999999874

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=9.4e-17  Score=153.43  Aligned_cols=209  Identities=24%  Similarity=0.344  Sum_probs=173.8

Q ss_pred             cCCCCCCCCCCCCCCCCcEEEcccCCcccccccC--CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCC-cccccC
Q 036269           22 AGVELKDWPSINTFEDLTGISLMFNDIHEVHEGL--QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGS-GVFSLF   98 (623)
Q Consensus        22 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~-~~~~~~   98 (623)
                      .+.++..+|. ...+.++.|++++|.++.+++..  ++++|++|++++|.+..++...+..++.++.+....+ .+   .
T Consensus        19 ~~~~L~~iP~-~ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~---~   94 (284)
T d1ozna_          19 PQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL---R   94 (284)
T ss_dssp             CSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC---C
T ss_pred             CCCCCCccCC-CCCCCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccccc---c
Confidence            3455778873 45578999999999999998753  8999999999999999777777888999999987644 45   4


Q ss_pred             CC-chhhhccccCcEEeccCCcCCCCc--ccccCCcCCcEEEcCCCCCcccc-ccccCCCccCEEeccCCCCCCcCchhh
Q 036269           99 SL-PSSLSFLINLRTLSLHDCQHFGDL--SLIGELSLLEILDLSESDVSEIP-VSFGRLGHLRLLDLTDCYNLELIPRGV  174 (623)
Q Consensus        99 ~l-p~~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~~l~~~~  174 (623)
                      .+ +..+.++++|++|++++|. +..+  ..+....+|+.+++++|.++.+| ..+..+++|+.|++++ +.+..++...
T Consensus        95 ~l~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~-N~l~~l~~~~  172 (284)
T d1ozna_          95 SVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG-NRISSVPERA  172 (284)
T ss_dssp             CCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCEECTTT
T ss_pred             cccchhhcccccCCEEecCCcc-cccccccccchhcccchhhhccccccccChhHhccccchhhccccc-Ccccccchhh
Confidence            44 5668899999999999998 7655  56778899999999999999886 5677899999999999 5677888777


Q ss_pred             hhccccCcEEEecccccccccccccccccccccccccCCCCccEEEeecCCCccCCCc--ccccCccEEEEEeCC
Q 036269          175 LSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSD--MSFQNLTSFSITIGG  247 (623)
Q Consensus       175 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~  247 (623)
                      +.++++|+.+++.+|.+.           ...+..++.+++|+.|++++|.+..++..  ..+++|+++++++++
T Consensus       173 f~~l~~L~~l~l~~N~l~-----------~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~  236 (284)
T d1ozna_         173 FRGLHSLDRLLLHQNRVA-----------HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP  236 (284)
T ss_dssp             TTTCTTCCEEECCSSCCC-----------EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             hccccccchhhhhhcccc-----------ccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCC
Confidence            899999999999999873           34467788999999999999998887765  678889999988775

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.71  E-value=9.5e-18  Score=163.04  Aligned_cols=128  Identities=22%  Similarity=0.330  Sum_probs=67.6

Q ss_pred             CcceEEccCCCCC---CCChhhHhCCCcccEEEccC-CcccccCCCchhhhccccCcEEeccCCcCCCCc--ccccCCcC
Q 036269           59 RLQALFLQKNDLL---DIPDPFFQGMKDLKVLDLGG-SGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDL--SLIGELSL  132 (623)
Q Consensus        59 ~L~~L~l~~~~~~---~l~~~~~~~l~~Lr~L~l~~-~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~  132 (623)
                      +++.|+++++.+.   .+|.++ .++++|++|++++ |.+.  +.+|.++.++++|++|++++|. +..+  ..+..+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l-~~L~~L~~L~Ls~~N~l~--g~iP~~i~~L~~L~~L~Ls~N~-l~~~~~~~~~~~~~  126 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSL-ANLPYLNFLYIGGINNLV--GPIPPAIAKLTQLHYLYITHTN-VSGAIPDFLSQIKT  126 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGG-GGCTTCSEEEEEEETTEE--SCCCGGGGGCTTCSEEEEEEEC-CEEECCGGGGGCTT
T ss_pred             EEEEEECCCCCCCCCCCCChHH-hcCccccccccccccccc--cccccccccccccchhhhcccc-ccccccccccchhh
Confidence            3555555555544   344443 5566666666654 4443  4555556666666666666655 4332  34555555


Q ss_pred             CcEEEcCCCCCc-cccccccCCCccCEEeccCCCCCCcCchhhhhccccC-cEEEeccccc
Q 036269          133 LEILDLSESDVS-EIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKL-EELYMSKTFC  191 (623)
Q Consensus       133 L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L-~~L~l~~~~~  191 (623)
                      |++++++.|.+. .+|..++++++|++++++++...+.+|.. +..+..+ +.+.++.|.+
T Consensus       127 L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~-~~~l~~l~~~l~~~~n~l  186 (313)
T d1ogqa_         127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEE
T ss_pred             hcccccccccccccCchhhccCcccceeeccccccccccccc-cccccccccccccccccc
Confidence            666666555444 44555556666666666554444445543 4444443 4555555544

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.71  E-value=3.8e-15  Score=147.19  Aligned_cols=137  Identities=20%  Similarity=0.266  Sum_probs=89.4

Q ss_pred             CCCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEec
Q 036269           36 EDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSL  115 (623)
Q Consensus        36 ~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l  115 (623)
                      .+++.|+++++.++.+|+.  .++|++|++++|.++++|.    ...+|+.|++++|.+   ..++..   .+.|++|++
T Consensus        38 ~~l~~LdLs~~~L~~lp~~--~~~L~~L~Ls~N~l~~lp~----~~~~L~~L~l~~n~l---~~l~~l---p~~L~~L~L  105 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPEL--PPHLESLVASCNSLTELPE----LPQSLKSLLVDNNNL---KALSDL---PPLLEYLGV  105 (353)
T ss_dssp             HTCSEEECTTSCCSCCCSC--CTTCSEEECCSSCCSSCCC----CCTTCCEEECCSSCC---SCCCSC---CTTCCEEEC
T ss_pred             cCCCEEEeCCCCCCCCCCC--CCCCCEEECCCCCCccccc----chhhhhhhhhhhccc---chhhhh---ccccccccc
Confidence            3577888888888877754  4578888888888877764    246778888888777   343321   135788888


Q ss_pred             cCCcCCCCcccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccccc
Q 036269          116 HDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFC  191 (623)
Q Consensus       116 ~~~~~l~~i~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~  191 (623)
                      ++|. +..++.++.+++|++|+++++.+...|..   ...+..+.+..+.. .... . +..++.++.+.+.++..
T Consensus       106 ~~n~-l~~lp~~~~l~~L~~L~l~~~~~~~~~~~---~~~l~~l~~~~~~~-~~~~-~-l~~l~~l~~L~l~~n~~  174 (353)
T d1jl5a_         106 SNNQ-LEKLPELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQL-EELP-E-LQNLPFLTAIYADNNSL  174 (353)
T ss_dssp             CSSC-CSSCCCCTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCC-SSCC-C-CTTCTTCCEEECCSSCC
T ss_pred             cccc-cccccchhhhccceeeccccccccccccc---cccccchhhccccc-cccc-c-ccccccceecccccccc
Confidence            8877 77776667777888888877777665543   34455555554222 2222 1 55667777777766644

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.1e-16  Score=152.94  Aligned_cols=198  Identities=19%  Similarity=0.240  Sum_probs=161.2

Q ss_pred             cEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCC
Q 036269           39 TGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDC  118 (623)
Q Consensus        39 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~  118 (623)
                      ..+..+++.++.+|..+. +.+++|+|++|.++.++...|.++++|++|+++++.+.  ...+..+..+..++.++...+
T Consensus        14 ~~v~c~~~~L~~iP~~ip-~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~--~i~~~~~~~~~~~~~l~~~~~   90 (284)
T d1ozna_          14 VTTSCPQQGLQAVPVGIP-AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA--RIDAAAFTGLALLEQLDLSDN   90 (284)
T ss_dssp             CEEECCSSCCSSCCTTCC-TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC--EECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCCCCCCccCCCCC-CCCCEEECcCCcCCCCCHHHhhcccccccccccccccc--ccccccccccccccccccccc
Confidence            345677778888887653 56899999999999888887899999999999999984  334455678899999988766


Q ss_pred             cCCCCc--ccccCCcCCcEEEcCCCCCcccc-ccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccccccccc
Q 036269          119 QHFGDL--SLIGELSLLEILDLSESDVSEIP-VSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQF  195 (623)
Q Consensus       119 ~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~  195 (623)
                      ..+..+  ..++++++|++|++++|.+..++ ..+..+++|+.+++++ +.++.++.+++..+++|++|++++|.+.   
T Consensus        91 ~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~-N~l~~i~~~~f~~~~~L~~L~l~~N~l~---  166 (284)
T d1ozna_          91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD-NALQALPDDTFRDLGNLTHLFLHGNRIS---  166 (284)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCC---
T ss_pred             cccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhcc-ccccccChhHhccccchhhcccccCccc---
Confidence            547666  57889999999999999988664 4677899999999999 6778888777889999999999999873   


Q ss_pred             ccccccccccccccccCCCCccEEEeecCCCccCCCc--ccccCccEEEEEeCCCCCC
Q 036269          196 ENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSD--MSFQNLTSFSITIGGPEEV  251 (623)
Q Consensus       196 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~  251 (623)
                              ...+..+..+++|+.+++++|.+..+.+.  ..+++|+.++++.+.....
T Consensus       167 --------~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~  216 (284)
T d1ozna_         167 --------SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL  216 (284)
T ss_dssp             --------EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             --------ccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccc
Confidence                    23345678899999999999998766543  7788999999887765433

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.69  E-value=5.8e-17  Score=157.39  Aligned_cols=252  Identities=17%  Similarity=0.191  Sum_probs=189.0

Q ss_pred             CCCCCC-----CCCCCcEEEcccCCcc---cccccC-CCCCcceEEccC-CCCC-CCChhhHhCCCcccEEEccCCcccc
Q 036269           28 DWPSIN-----TFEDLTGISLMFNDIH---EVHEGL-QCPRLQALFLQK-NDLL-DIPDPFFQGMKDLKVLDLGGSGVFS   96 (623)
Q Consensus        28 ~~~~~~-----~~~~l~~L~l~~~~~~---~l~~~~-~~~~L~~L~l~~-~~~~-~l~~~~~~~l~~Lr~L~l~~~~~~~   96 (623)
                      .|.++.     ...+|+.|+++++.+.   .+|+.+ ++++|++|++++ |.+. .+|..+ .++++|++|++++|.+. 
T Consensus        37 ~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i-~~L~~L~~L~Ls~N~l~-  114 (313)
T d1ogqa_          37 TWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVS-  114 (313)
T ss_dssp             CSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCE-
T ss_pred             cCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccccccccc-ccccccchhhhcccccc-
Confidence            477662     3346999999999886   577777 899999999987 6777 788875 99999999999999996 


Q ss_pred             cCCCchhhhccccCcEEeccCCcCCCCc-ccccCCcCCcEEEcCCCCCc-cccccccCCCcc-CEEeccCCCCCCcCchh
Q 036269           97 LFSLPSSLSFLINLRTLSLHDCQHFGDL-SLIGELSLLEILDLSESDVS-EIPVSFGRLGHL-RLLDLTDCYNLELIPRG  173 (623)
Q Consensus        97 ~~~lp~~~~~l~~L~~L~l~~~~~l~~i-~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L-~~L~l~~~~~~~~l~~~  173 (623)
                       +..+..+..+.+|+++++++|.....+ ..++.+++|+++++++|.+. .+|..+..+..+ +.++++++...+..|..
T Consensus       115 -~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~  193 (313)
T d1ogqa_         115 -GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT  193 (313)
T ss_dssp             -EECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG
T ss_pred             -ccccccccchhhhcccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccc
Confidence             556677889999999999999823444 78999999999999999988 789888888886 88888885444444543


Q ss_pred             hhhccccCcEEEecccccccccccccccccccccccccCCCCccEEEeecCCCccCCCc-ccccCccEEEEEeCCCCCCC
Q 036269          174 VLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSD-MSFQNLTSFSITIGGPEEVP  252 (623)
Q Consensus       174 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~  252 (623)
                       +..+..+ .+++..+...           ...+..++.+++++.+++.++.+...+.. ..+++|+.|+++.+...   
T Consensus       194 -~~~l~~~-~l~l~~~~~~-----------~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~---  257 (313)
T d1ogqa_         194 -FANLNLA-FVDLSRNMLE-----------GDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIY---  257 (313)
T ss_dssp             -GGGCCCS-EEECCSSEEE-----------ECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCE---
T ss_pred             -ccccccc-cccccccccc-----------ccccccccccccccccccccccccccccccccccccccccCccCeec---
Confidence             6666544 6888777652           45566778889999999998875433333 56677888777665422   


Q ss_pred             cchhhhhhhhcccccccceeeeccccccccchHHHHHHHhhceeEeecccCCcccccccccccCccCccEEEEecccC
Q 036269          253 LSDFIEVFSRKFKKRCSRAMGLSQDMRISALPSWIKNLLLRSEILALGDVNDLENIVSDLAHDGFNELMFLAIVGCNE  330 (623)
Q Consensus       253 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  330 (623)
                                                  +.+|.++..+ ++|++|++++|.. +..+|..  ..+.+|+.+++.++..
T Consensus       258 ----------------------------g~iP~~l~~L-~~L~~L~Ls~N~l-~g~iP~~--~~L~~L~~l~l~~N~~  303 (313)
T d1ogqa_         258 ----------------------------GTLPQGLTQL-KFLHSLNVSFNNL-CGEIPQG--GNLQRFDVSAYANNKC  303 (313)
T ss_dssp             ----------------------------ECCCGGGGGC-TTCCEEECCSSEE-EEECCCS--TTGGGSCGGGTCSSSE
T ss_pred             ----------------------------ccCChHHhCC-CCCCEEECcCCcc-cccCCCc--ccCCCCCHHHhCCCcc
Confidence                                        2456665555 7889999988764 3223443  4577888888888853

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=3.1e-16  Score=144.27  Aligned_cols=196  Identities=19%  Similarity=0.283  Sum_probs=159.8

Q ss_pred             CCCCCCCCCCCCCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhh
Q 036269           26 LKDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLS  105 (623)
Q Consensus        26 ~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~  105 (623)
                      ..+....+.+.+++.|++.+|.+++++....+++|+.|++++|.+..+.+  +.++++|+++++++|.+   +.++ .+.
T Consensus        31 ~~d~~~~~~l~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~---~~i~-~l~  104 (227)
T d1h6ua2          31 VTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPL---KNVS-AIA  104 (227)
T ss_dssp             TTSEECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCC---SCCG-GGT
T ss_pred             cCCcCCHHHcCCcCEEECCCCCCCcchhHhcCCCCcEeecCCceeecccc--ccccccccccccccccc---cccc-ccc
Confidence            33444445578899999999999988655589999999999999987765  68999999999999988   5554 477


Q ss_pred             ccccCcEEeccCCcCCCCcccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEE
Q 036269          106 FLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELY  185 (623)
Q Consensus       106 ~l~~L~~L~l~~~~~l~~i~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~  185 (623)
                      .+++|++++++++. ...+..+...+.++.+.++.+.+...+ .+.++++|++|++++| .+...+.  ++++++|+.|+
T Consensus       105 ~l~~L~~l~l~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~L~~L~l~~n-~~~~~~~--l~~l~~L~~L~  179 (227)
T d1h6ua2         105 GLQSIKTLDLTSTQ-ITDVTPLAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGNA-QVSDLTP--LANLSKLTTLK  179 (227)
T ss_dssp             TCTTCCEEECTTSC-CCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEE
T ss_pred             cccccccccccccc-ccccchhccccchhhhhchhhhhchhh-hhcccccccccccccc-ccccchh--hcccccceecc
Confidence            89999999999988 767777788899999999988877543 4678899999999984 4555554  78899999999


Q ss_pred             ecccccccccccccccccccccccccCCCCccEEEeecCCCccCCCcccccCccEEEEEe
Q 036269          186 MSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPEGEIMPSDMSFQNLTSFSITI  245 (623)
Q Consensus       186 l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~  245 (623)
                      +++|.+.            . +..++++++|+.|++++|.++.++....+++|+.|++++
T Consensus       180 Ls~n~l~------------~-l~~l~~l~~L~~L~Ls~N~lt~i~~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         180 ADDNKIS------------D-ISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTN  226 (227)
T ss_dssp             CCSSCCC------------C-CGGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEE
T ss_pred             cCCCccC------------C-ChhhcCCCCCCEEECcCCcCCCCcccccCCCCCEEEeeC
Confidence            9998772            2 334788999999999999988887767889999998864

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=2.7e-16  Score=141.17  Aligned_cols=146  Identities=22%  Similarity=0.314  Sum_probs=74.1

Q ss_pred             CCCCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEe
Q 036269           35 FEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLS  114 (623)
Q Consensus        35 ~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~  114 (623)
                      +++++.|+++++.++.+.....+++|++|++++|.+..+++  +.++++|++|++++|.+   ..++ .+.++++|+.|+
T Consensus        39 l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~---~~~~-~l~~l~~L~~L~  112 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQI---ADIT-PLANLTNLTGLT  112 (199)
T ss_dssp             HTTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC---CCCG-GGTTCTTCSEEE
T ss_pred             hcCCCEEECCCCCCCCccccccCCCcCcCccccccccCccc--ccCCccccccccccccc---cccc-cccccccccccc
Confidence            34555555555555554433345555555555555554443  35555555555555554   3333 244555555555


Q ss_pred             ccCCcCCCCcccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccccc
Q 036269          115 LHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFC  191 (623)
Q Consensus       115 l~~~~~l~~i~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~  191 (623)
                      ++++. ...+..+..+++|+.|++++|.+..++ .+..+++|+.|++.+ +.+..++.  ++++++|++|++++|.+
T Consensus       113 l~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L~l~~-n~l~~l~~--l~~l~~L~~L~ls~N~i  184 (199)
T d2omxa2         113 LFNNQ-ITDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNFSS-NQVTDLKP--LANLTTLERLDISSNKV  184 (199)
T ss_dssp             CCSSC-CCCCGGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCS-SCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             ccccc-cccccccchhhhhHHhhhhhhhhcccc-ccccccccccccccc-ccccCCcc--ccCCCCCCEEECCCCCC
Confidence            55554 444444455555555555555554443 345555555555555 23334432  45555555555555544

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=2.3e-16  Score=142.90  Aligned_cols=146  Identities=32%  Similarity=0.407  Sum_probs=81.8

Q ss_pred             CCCCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEe
Q 036269           35 FEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLS  114 (623)
Q Consensus        35 ~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~  114 (623)
                      +.+++.|+++++.++.++....+++|++|++++|.+..+++  ++.+++|++|++++|.+   ..+| .+..+++|+.|+
T Consensus        45 L~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l~~--~~~l~~L~~L~l~~n~i---~~l~-~l~~l~~L~~L~  118 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV---KDLS-SLKDLKKLKSLS  118 (210)
T ss_dssp             HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC---CCGG-GGTTCTTCCEEE
T ss_pred             hcCccEEECcCCCCCCchhHhhCCCCCEEeCCCccccCccc--cccCccccccccccccc---cccc-cccccccccccc
Confidence            34566666666666555443355666666666666555543  35566666666666655   3444 355566666666


Q ss_pred             ccCCcCCCCcccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccccc
Q 036269          115 LHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFC  191 (623)
Q Consensus       115 l~~~~~l~~i~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~  191 (623)
                      +++|. +..+..+..+++++.+++++|.++..+ .+.++++|+++++++| .+..++.  +.++++|++|++++|.+
T Consensus       119 l~~~~-~~~~~~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n-~l~~i~~--l~~l~~L~~L~Ls~N~i  190 (210)
T d1h6ta2         119 LEHNG-ISDINGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYLSKNHI  190 (210)
T ss_dssp             CTTSC-CCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             ccccc-ccccccccccccccccccccccccccc-cccccccccccccccc-ccccccc--ccCCCCCCEEECCCCCC
Confidence            66665 555555555566666666666555433 3445556666666653 3344443  45556666666655554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=4.4e-16  Score=141.04  Aligned_cols=180  Identities=22%  Similarity=0.286  Sum_probs=148.6

Q ss_pred             EcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCCcCC
Q 036269           42 SLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHF  121 (623)
Q Consensus        42 ~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l  121 (623)
                      .+..+.+++......+..|+.|++++|.+..++.  +..+++|++|++++|.+   ..++. +..+++|++|++++|. +
T Consensus        30 ~l~~~~~~~~~~~~~L~~L~~L~l~~~~i~~l~~--l~~l~~L~~L~L~~n~i---~~l~~-~~~l~~L~~L~l~~n~-i  102 (210)
T d1h6ta2          30 NLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKL---TDIKP-LANLKNLGWLFLDENK-V  102 (210)
T ss_dssp             HTTCSCTTSEECHHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCC---CCCGG-GTTCTTCCEEECCSSC-C
T ss_pred             HhCcCccCCccCHHHhcCccEEECcCCCCCCchh--HhhCCCCCEEeCCCccc---cCccc-cccCcccccccccccc-c
Confidence            3444444443332356789999999999988775  58999999999999999   56664 6789999999999998 9


Q ss_pred             CCcccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccccccccccccccc
Q 036269          122 GDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDS  201 (623)
Q Consensus       122 ~~i~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  201 (623)
                      ++++.+..+++|+.|++++|.+..++ .+..+++++.+++++ +.+...+.  +..+++|+++++++|.+.         
T Consensus       103 ~~l~~l~~l~~L~~L~l~~~~~~~~~-~l~~l~~l~~l~~~~-n~l~~~~~--~~~l~~L~~l~l~~n~l~---------  169 (210)
T d1h6ta2         103 KDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGN-NKITDITV--LSRLTKLDTLSLEDNQIS---------  169 (210)
T ss_dssp             CCGGGGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCS-SCCCCCGG--GGGCTTCSEEECCSSCCC---------
T ss_pred             cccccccccccccccccccccccccc-ccccccccccccccc-cccccccc--cccccccccccccccccc---------
Confidence            88888999999999999999988775 688899999999998 45565554  788999999999999872         


Q ss_pred             ccccccccccCCCCccEEEeecCCCccCCCcccccCccEEEEEe
Q 036269          202 RSNAKFIELGALSRLTSLHIDIPEGEIMPSDMSFQNLTSFSITI  245 (623)
Q Consensus       202 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~  245 (623)
                         . +..++++++|+.|++++|.++.++....+++|+.|++++
T Consensus       170 ---~-i~~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         170 ---D-IVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFS  209 (210)
T ss_dssp             ---C-CGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEE
T ss_pred             ---c-cccccCCCCCCEEECCCCCCCCChhhcCCCCCCEEEccC
Confidence               2 335889999999999999998887667889999999874

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=3.7e-16  Score=140.31  Aligned_cols=177  Identities=19%  Similarity=0.266  Sum_probs=146.8

Q ss_pred             EEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCCcC
Q 036269           41 ISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQH  120 (623)
Q Consensus        41 L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~  120 (623)
                      ..++.+.+++......+++++.|++++|.+.++..  ++++++|++|++++|.+   ..++. +.++++|++|++++|. 
T Consensus        23 ~~l~~~~~~~~~~~~~l~~l~~L~l~~~~i~~l~~--l~~l~nL~~L~Ls~N~l---~~~~~-l~~l~~L~~L~l~~n~-   95 (199)
T d2omxa2          23 TVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQL---TDITP-LKNLTKLVDILMNNNQ-   95 (199)
T ss_dssp             HHTTCSSTTSEECHHHHTTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCC---CCCGG-GTTCTTCCEEECCSSC-
T ss_pred             HHhCCCCCCCccCHHHhcCCCEEECCCCCCCCccc--cccCCCcCcCccccccc---cCccc-ccCCcccccccccccc-
Confidence            34555566555444467899999999999998865  68999999999999998   55654 8899999999999998 


Q ss_pred             CCCcccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecccccccccccccc
Q 036269          121 FGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDD  200 (623)
Q Consensus       121 l~~i~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~  200 (623)
                      +..++.++++++|++|+++++.+..++ .+..+++|+.|++++| .+..++.  +..+++|+.|++.+|.+.        
T Consensus        96 ~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~--l~~~~~L~~L~l~~n~l~--------  163 (199)
T d2omxa2          96 IADITPLANLTNLTGLTLFNNQITDID-PLKNLTNLNRLELSSN-TISDISA--LSGLTSLQQLNFSSNQVT--------  163 (199)
T ss_dssp             CCCCGGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSS-CCCCCGG--GTTCTTCSEEECCSSCCC--------
T ss_pred             ccccccccccccccccccccccccccc-ccchhhhhHHhhhhhh-hhccccc--cccccccccccccccccc--------
Confidence            888878999999999999999887654 5889999999999994 5666664  889999999999999872        


Q ss_pred             cccccccccccCCCCccEEEeecCCCccCCCcccccCccEE
Q 036269          201 SRSNAKFIELGALSRLTSLHIDIPEGEIMPSDMSFQNLTSF  241 (623)
Q Consensus       201 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L  241 (623)
                           .+..++++++|+.|++++|.+++++....+++|++|
T Consensus       164 -----~l~~l~~l~~L~~L~ls~N~i~~i~~l~~L~~L~~L  199 (199)
T d2omxa2         164 -----DLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL  199 (199)
T ss_dssp             -----CCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEE
T ss_pred             -----CCccccCCCCCCEEECCCCCCCCCccccCCCCCCcC
Confidence                 234588999999999999998888765778888765

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.67  E-value=1.4e-14  Score=143.00  Aligned_cols=140  Identities=21%  Similarity=0.271  Sum_probs=101.9

Q ss_pred             CCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCCcCCCCcccccCCcCCcEEE
Q 036269           58 PRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILD  137 (623)
Q Consensus        58 ~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~i~~~~~l~~L~~L~  137 (623)
                      .+++.|+++++.++.+|+    -.++|++|++++|.+   ..+|..   +.+|+.|++.+|. +..++.+  .+.|++|+
T Consensus        38 ~~l~~LdLs~~~L~~lp~----~~~~L~~L~Ls~N~l---~~lp~~---~~~L~~L~l~~n~-l~~l~~l--p~~L~~L~  104 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPE----LPPHLESLVASCNSL---TELPEL---PQSLKSLLVDNNN-LKALSDL--PPLLEYLG  104 (353)
T ss_dssp             HTCSEEECTTSCCSCCCS----CCTTCSEEECCSSCC---SSCCCC---CTTCCEEECCSSC-CSCCCSC--CTTCCEEE
T ss_pred             cCCCEEEeCCCCCCCCCC----CCCCCCEEECCCCCC---cccccc---hhhhhhhhhhhcc-cchhhhh--cccccccc
Confidence            468899999999998885    357899999999999   778865   4578999999988 7666432  24699999


Q ss_pred             cCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEecccccccccccccccccccccccccCCCCcc
Q 036269          138 LSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLT  217 (623)
Q Consensus       138 l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~  217 (623)
                      +++|.+..+|. ++++++|++|+++++ .+...+..    ...+..+.+..+..             .....++.++.++
T Consensus       105 L~~n~l~~lp~-~~~l~~L~~L~l~~~-~~~~~~~~----~~~l~~l~~~~~~~-------------~~~~~l~~l~~l~  165 (353)
T d1jl5a_         105 VSNNQLEKLPE-LQNSSFLKIIDVDNN-SLKKLPDL----PPSLEFIAAGNNQL-------------EELPELQNLPFLT  165 (353)
T ss_dssp             CCSSCCSSCCC-CTTCTTCCEEECCSS-CCSCCCCC----CTTCCEEECCSSCC-------------SSCCCCTTCTTCC
T ss_pred             ccccccccccc-hhhhccceeeccccc-cccccccc----cccccchhhccccc-------------cccccccccccce
Confidence            99999998884 688999999999884 44444432    34555666655433             2234466677778


Q ss_pred             EEEeecCCCccC
Q 036269          218 SLHIDIPEGEIM  229 (623)
Q Consensus       218 ~L~l~~~~~~~~  229 (623)
                      .+++.++....+
T Consensus       166 ~L~l~~n~~~~~  177 (353)
T d1jl5a_         166 AIYADNNSLKKL  177 (353)
T ss_dssp             EEECCSSCCSSC
T ss_pred             eccccccccccc
Confidence            888777664433

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.62  E-value=1.6e-14  Score=132.63  Aligned_cols=180  Identities=22%  Similarity=0.313  Sum_probs=152.8

Q ss_pred             eecCCCCCCCCCCCCCCCCcEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCC
Q 036269           20 IKAGVELKDWPSINTFEDLTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFS   99 (623)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~   99 (623)
                      ...+.++.+++++..+++|+.|++++|.++.+++...+++++.+++++|.+++++.  +.+++.|++++++++..   ..
T Consensus        47 ~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~i~~--l~~l~~L~~l~l~~~~~---~~  121 (227)
T d1h6ua2          47 SAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQI---TD  121 (227)
T ss_dssp             ECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGG--GTTCTTCCEEECTTSCC---CC
T ss_pred             ECCCCCCCcchhHhcCCCCcEeecCCceeecccccccccccccccccccccccccc--ccccccccccccccccc---cc
Confidence            33456788888899999999999999999988877799999999999999988765  68999999999999987   33


Q ss_pred             CchhhhccccCcEEeccCCcCCCCcccccCCcCCcEEEcCCCCCccccccccCCCccCEEeccCCCCCCcCchhhhhccc
Q 036269          100 LPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPRGVLSRLR  179 (623)
Q Consensus       100 lp~~~~~l~~L~~L~l~~~~~l~~i~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~  179 (623)
                      + ..+...+.++.+.++++. +.....+.++++|++|++++|.+...+ .++++++|+.|++++| .++.++.  +.+++
T Consensus       122 ~-~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~Ls~n-~l~~l~~--l~~l~  195 (227)
T d1h6ua2         122 V-TPLAGLSNLQVLYLDLNQ-ITNISPLAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKADDN-KISDISP--LASLP  195 (227)
T ss_dssp             C-GGGTTCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSS-CCCCCGG--GGGCT
T ss_pred             c-chhccccchhhhhchhhh-hchhhhhccccccccccccccccccch-hhcccccceecccCCC-ccCCChh--hcCCC
Confidence            3 335678899999999888 766667888999999999999988665 4889999999999995 6777875  89999


Q ss_pred             cCcEEEecccccccccccccccccccccccccCCCCccEEEeec
Q 036269          180 KLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDI  223 (623)
Q Consensus       180 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~  223 (623)
                      +|++|++++|.+.            . ...++++++|+.|++++
T Consensus       196 ~L~~L~Ls~N~lt------------~-i~~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         196 NLIEVHLKNNQIS------------D-VSPLANTSNLFIVTLTN  226 (227)
T ss_dssp             TCCEEECTTSCCC------------B-CGGGTTCTTCCEEEEEE
T ss_pred             CCCEEECcCCcCC------------C-CcccccCCCCCEEEeeC
Confidence            9999999999872            2 23588999999999874

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=2.1e-15  Score=143.35  Aligned_cols=191  Identities=15%  Similarity=0.135  Sum_probs=131.3

Q ss_pred             CccCccEEEEecccCceeecccccccccccccccceeecccCcccccccccccCCCcCCCccEEEEeecCCcccccchhH
Q 036269          316 GFNELMFLAIVGCNEMKYLLNSLERTLRVTLLKLEWLMIVDNRNFVEICHGQLPAGCLSNVKRLDVRDCGSVLKILPSHL  395 (623)
Q Consensus       316 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~  395 (623)
                      ...+|++|++++| .+..   .........+++|++|.+.+|. +.+.....+  +.+++|+.|++++|..+++......
T Consensus        44 ~~~~L~~LdLs~~-~i~~---~~l~~l~~~c~~L~~L~L~~~~-l~~~~~~~l--~~~~~L~~L~Ls~c~~itd~~l~~l  116 (284)
T d2astb2          44 SPFRVQHMDLSNS-VIEV---STLHGILSQCSKLQNLSLEGLR-LSDPIVNTL--AKNSNLVRLNLSGCSGFSEFALQTL  116 (284)
T ss_dssp             CCBCCCEEECTTC-EECH---HHHHHHHTTBCCCSEEECTTCB-CCHHHHHHH--TTCTTCSEEECTTCBSCCHHHHHHH
T ss_pred             cCCCCCEEECCCC-ccCH---HHHHHHHHhCCCcccccccccC-CCcHHHHHH--hcCCCCcCccccccccccccccchh
Confidence            4568999999988 3321   1111145668999999999986 433222222  3678999999999998886443444


Q ss_pred             HHhccccceEEEeccccceeeeeccceecccccc-ccccCccEEecCCcc-chhhcccCCCcccccCCccEEEEEcCCCc
Q 036269          396 VQSFQNLQRLRVEGCELLVSVFEIERVNIAKEET-ELFSSLEKLTLIGLP-RMTDIWKGDTQFVSLHDLKKIRVVFCDEL  473 (623)
Q Consensus       396 ~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~-~~~~~L~~L~l~~c~-~l~~i~~~~~~~~~l~~L~~L~l~~C~~l  473 (623)
                      ...+++|++|++++|..+++.    +.   .... ..+++|+.|++++|. .+++. .......++++|++|++++|+.+
T Consensus       117 ~~~~~~L~~L~ls~c~~~~~~----~~---~~~~~~~~~~L~~L~l~~~~~~i~~~-~l~~l~~~~~~L~~L~L~~~~~i  188 (284)
T d2astb2         117 LSSCSRLDELNLSWCFDFTEK----HV---QVAVAHVSETITQLNLSGYRKNLQKS-DLSTLVRRCPNLVHLDLSDSVML  188 (284)
T ss_dssp             HHHCTTCCEEECCCCTTCCHH----HH---HHHHHHSCTTCCEEECCSCGGGSCHH-HHHHHHHHCTTCSEEECTTCTTC
T ss_pred             hHHHHhccccccccccccccc----cc---hhhhcccccccchhhhcccccccccc-cccccccccccccccccccccCC
Confidence            678899999999999887643    11   1111 336889999999874 34321 00122356899999999999887


Q ss_pred             ceeccCcccCcccchhhhhhcccccccceeccccCCCCCCCCCCccEEEEecCCCcceecchhhhhccCCCCEEEEccCC
Q 036269          474 RQVFPANLGKKAAAEEMVLYRNRRDQIHIHATTSTSSPTPSLGNLVSITIRGCGKLRNLFTTSMVKSLVRLESLEVSRCP  553 (623)
Q Consensus       474 ~~~~~~~l~~~~~L~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~  553 (623)
                      ++....                               .+..+++|++|++++|.++++-.. ..+.++++|++|++++|-
T Consensus       189 td~~~~-------------------------------~l~~~~~L~~L~L~~C~~i~~~~l-~~L~~~~~L~~L~l~~~~  236 (284)
T d2astb2         189 KNDCFQ-------------------------------EFFQLNYLQHLSLSRCYDIIPETL-LELGEIPTLKTLQVFGIV  236 (284)
T ss_dssp             CGGGGG-------------------------------GGGGCTTCCEEECTTCTTCCGGGG-GGGGGCTTCCEEECTTSS
T ss_pred             Cchhhh-------------------------------hhcccCcCCEEECCCCCCCChHHH-HHHhcCCCCCEEeeeCCC
Confidence            654221                               234678999999999999887533 336778999999999983

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.5e-15  Score=144.33  Aligned_cols=95  Identities=17%  Similarity=0.229  Sum_probs=58.8

Q ss_pred             cCCCccEEEEeecCCcccccchhHHHhccccceEEEeccccceeeeeccceeccccccccccCccEEecCCccchhhccc
Q 036269          372 CLSNVKRLDVRDCGSVLKILPSHLVQSFQNLQRLRVEGCELLVSVFEIERVNIAKEETELFSSLEKLTLIGLPRMTDIWK  451 (623)
Q Consensus       372 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~  451 (623)
                      .+|+|++|++++|+.+++..... +.++++|++|++++|+.+++.    +    ...+..+|+|+.|++++|..-..+  
T Consensus       173 ~~~~L~~L~L~~~~~itd~~~~~-l~~~~~L~~L~L~~C~~i~~~----~----l~~L~~~~~L~~L~l~~~~~d~~l--  241 (284)
T d2astb2         173 RCPNLVHLDLSDSVMLKNDCFQE-FFQLNYLQHLSLSRCYDIIPE----T----LLELGEIPTLKTLQVFGIVPDGTL--  241 (284)
T ss_dssp             HCTTCSEEECTTCTTCCGGGGGG-GGGCTTCCEEECTTCTTCCGG----G----GGGGGGCTTCCEEECTTSSCTTCH--
T ss_pred             ccccccccccccccCCCchhhhh-hcccCcCCEEECCCCCCCChH----H----HHHHhcCCCCCEEeeeCCCCHHHH--
Confidence            45777778887777777654444 567788888888888877653    1    234556788888888887221111  


Q ss_pred             CCCcccccCCccEEEEEcCCCcceeccCccc
Q 036269          452 GDTQFVSLHDLKKIRVVFCDELRQVFPANLG  482 (623)
Q Consensus       452 ~~~~~~~l~~L~~L~l~~C~~l~~~~~~~l~  482 (623)
                       ......+|+|+   + +|..++.+.+..++
T Consensus       242 -~~l~~~lp~L~---i-~~~~ls~~~~~~~~  267 (284)
T d2astb2         242 -QLLKEALPHLQ---I-NCSHFTTIARPTIG  267 (284)
T ss_dssp             -HHHHHHSTTSE---E-SCCCSCCTTCSSCS
T ss_pred             -HHHHHhCcccc---c-cCccCCCCCCCccC
Confidence             11123456655   3 56777766444443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.50  E-value=8.4e-14  Score=113.32  Aligned_cols=117  Identities=21%  Similarity=0.252  Sum_probs=76.4

Q ss_pred             ceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCCcCCCCcccccCCcCCcEEEcCC
Q 036269           61 QALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLIGELSLLEILDLSE  140 (623)
Q Consensus        61 ~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~i~~~~~l~~L~~L~l~~  140 (623)
                      |+|++++|.++.++.  +.++++|++|++++|.+   ..+|..+..+++|++|++++|. +++++.++.+++|++|++++
T Consensus         1 R~L~Ls~n~l~~l~~--l~~l~~L~~L~ls~N~l---~~lp~~~~~l~~L~~L~l~~N~-i~~l~~~~~l~~L~~L~l~~   74 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRL---RALPPALAALRCLEVLQASDNA-LENVDGVANLPRLQELLLCN   74 (124)
T ss_dssp             SEEECTTSCCSSCCC--GGGGTTCCEEECCSSCC---CCCCGGGGGCTTCCEEECCSSC-CCCCGGGTTCSSCCEEECCS
T ss_pred             CEEEcCCCCCCCCcc--cccCCCCCEEECCCCcc---Ccchhhhhhhhccccccccccc-ccccCccccccccCeEECCC
Confidence            467777777776654  46777777777777777   5666667777777777777776 76666677777777777777


Q ss_pred             CCCcccc--ccccCCCccCEEeccCCCCCC---cCchhhhhccccCcEE
Q 036269          141 SDVSEIP--VSFGRLGHLRLLDLTDCYNLE---LIPRGVLSRLRKLEEL  184 (623)
Q Consensus       141 ~~i~~lp--~~i~~l~~L~~L~l~~~~~~~---~l~~~~~~~l~~L~~L  184 (623)
                      |.++.+|  ..+.++++|++|+++++ .+.   ..+..+...+++|+.+
T Consensus        75 N~i~~~~~~~~l~~~~~L~~L~l~~N-~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          75 NRLQQSAAIQPLVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CccCCCCCchhhcCCCCCCEEECCCC-cCCcCccHHHHHHHHCcCcceE
Confidence            7776554  34666777777777763 232   2233334445555544

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=9.8e-14  Score=118.94  Aligned_cols=106  Identities=16%  Similarity=0.161  Sum_probs=51.6

Q ss_pred             CCCcEEEcccCCcccccccC-CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchh-hhccccCcEE
Q 036269           36 EDLTGISLMFNDIHEVHEGL-QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSS-LSFLINLRTL  113 (623)
Q Consensus        36 ~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~-~~~l~~L~~L  113 (623)
                      .++|.|++++|.|+.++... .+++|++|++++|.+.+++.  |..+++|++|++++|.+   ..+|.. +..+++|++|
T Consensus        18 ~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~--~~~l~~L~~L~ls~N~i---~~l~~~~~~~l~~L~~L   92 (162)
T d1a9na_          18 VRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLVNNNRI---CRIGEGLDQALPDLTEL   92 (162)
T ss_dssp             TSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECC--CCCCSSCCEEECCSSCC---CEECSCHHHHCTTCCEE
T ss_pred             CcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccCC--cccCcchhhhhcccccc---cCCCccccccccccccc
Confidence            44555555555555554433 44555555555555554432  35555555555555555   333332 2345555555


Q ss_pred             eccCCcCCCCc---ccccCCcCCcEEEcCCCCCcccc
Q 036269          114 SLHDCQHFGDL---SLIGELSLLEILDLSESDVSEIP  147 (623)
Q Consensus       114 ~l~~~~~l~~i---~~~~~l~~L~~L~l~~~~i~~lp  147 (623)
                      ++++|. +.++   ..+..+++|++|++++|.++..|
T Consensus        93 ~L~~N~-i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~  128 (162)
T d1a9na_          93 ILTNNS-LVELGDLDPLASLKSLTYLCILRNPVTNKK  128 (162)
T ss_dssp             ECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGGST
T ss_pred             eecccc-ccccccccccccccccchhhcCCCcccccc
Confidence            555554 4333   23444455555555555444433

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=4.7e-13  Score=124.11  Aligned_cols=205  Identities=17%  Similarity=0.181  Sum_probs=129.5

Q ss_pred             ecCCCCCCCCCCCCCCCCcEEEcccCCcccccccC--CCCCcceEEccCCCCC-CCChhhHhCCCcccEEEccC-Ccccc
Q 036269           21 KAGVELKDWPSINTFEDLTGISLMFNDIHEVHEGL--QCPRLQALFLQKNDLL-DIPDPFFQGMKDLKVLDLGG-SGVFS   96 (623)
Q Consensus        21 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~-~l~~~~~~~l~~Lr~L~l~~-~~~~~   96 (623)
                      ..+.++..+|. ..++.++.|++++|.++.++...  ++++|++|++++|.+. .++...|.+++.++++.+.. +.+. 
T Consensus        15 c~~~~l~~iP~-~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~-   92 (242)
T d1xwdc1          15 CQESKVTEIPS-DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-   92 (242)
T ss_dssp             EESCSCSSCCS-CSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCC-
T ss_pred             EeCCCCCCcCC-CCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccc-
Confidence            34455667763 33467888888888888887643  7888888888888776 35555567888888887754 4452 


Q ss_pred             cCCCchhhhccccCcEEeccCCcCCCCcc---cccCCcCCcEEEcCCCCCcccc-ccccCC-CccCEEeccCCCCCCcCc
Q 036269           97 LFSLPSSLSFLINLRTLSLHDCQHFGDLS---LIGELSLLEILDLSESDVSEIP-VSFGRL-GHLRLLDLTDCYNLELIP  171 (623)
Q Consensus        97 ~~~lp~~~~~l~~L~~L~l~~~~~l~~i~---~~~~l~~L~~L~l~~~~i~~lp-~~i~~l-~~L~~L~l~~~~~~~~l~  171 (623)
                       ...+..+.++++|+++++.++. +..+.   .+..+..+..+...++.+..++ ..+..+ ..++.|++.+ +.++.++
T Consensus        93 -~~~~~~~~~l~~L~~l~l~~~~-l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~-n~l~~i~  169 (242)
T d1xwdc1          93 -YINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQEIH  169 (242)
T ss_dssp             -EECTTSEECCTTCCEEEEESCC-CCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCCEEC
T ss_pred             -ccccccccccccccccccchhh-hcccccccccccccccccccccccccccccccccccccccceeeeccc-ccccccc
Confidence             3334556778888888888887 65553   3334455555556666666554 334444 3677788877 5566666


Q ss_pred             hhhhhccccCcEEE-eccccccccccccccccccccc-ccccCCCCccEEEeecCCCccCCCc--ccccCccEEEE
Q 036269          172 RGVLSRLRKLEELY-MSKTFCHWQFENEDDSRSNAKF-IELGALSRLTSLHIDIPEGEIMPSD--MSFQNLTSFSI  243 (623)
Q Consensus       172 ~~~~~~l~~L~~L~-l~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l  243 (623)
                      .. .....+++.+. +.+|.+.            .++ ..+.++++|+.|++++|.+..+|..  ..+++|+.+++
T Consensus       170 ~~-~~~~~~l~~~~~l~~n~l~------------~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         170 NC-AFNGTQLDELNLSDNNNLE------------ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             TT-TTTTCCEEEEECTTCTTCC------------CCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSE
T ss_pred             cc-cccchhhhccccccccccc------------cccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcC
Confidence            65 33445555543 4555441            222 2367788888888888888777665  34444444433

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=3.2e-13  Score=125.21  Aligned_cols=198  Identities=17%  Similarity=0.174  Sum_probs=144.7

Q ss_pred             cEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCc-hhhhccccCcEEeccC
Q 036269           39 TGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLP-SSLSFLINLRTLSLHD  117 (623)
Q Consensus        39 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp-~~~~~l~~L~~L~l~~  117 (623)
                      +.++.++..++.+|..+. +++++|++++|.+..++...|.++++|++|++++|.+.  ..++ ..+..+++++++.+..
T Consensus        11 ~~i~c~~~~l~~iP~~l~-~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~--~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLP-RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL--EVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCSSCCSCSC-SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTC--CEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCCCcCCCCC-CCCCEEECcCCcCCccChhHhhccchhhhhhhcccccc--ceeeccccccccccccccccc
Confidence            577888888899987653 57999999999999888877899999999999999884  3343 3577899999999877


Q ss_pred             CcCCCCc--ccccCCcCCcEEEcCCCCCccccc--cccCCCccCEEeccCCCCCCcCchhhhhccc-cCcEEEecccccc
Q 036269          118 CQHFGDL--SLIGELSLLEILDLSESDVSEIPV--SFGRLGHLRLLDLTDCYNLELIPRGVLSRLR-KLEELYMSKTFCH  192 (623)
Q Consensus       118 ~~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~-~L~~L~l~~~~~~  192 (623)
                      +..+..+  ..+.++++|++++++++.+...+.  .+..+..+..+...+ ..+..++...+.+++ .++.+++.+|.+.
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n-~~l~~i~~~~~~~~~~~l~~L~l~~n~l~  166 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN-INIHTIERNSFVGLSFESVILWLNKNGIQ  166 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESC-TTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             cccccccccccccccccccccccchhhhcccccccccccccccccccccc-cccccccccccccccccceeeeccccccc
Confidence            6546544  568899999999999999886653  223344444444444 566667655456554 7888999888773


Q ss_pred             cccccccccccccccccccCCCCccEEE-eecCCCccCCCc--ccccCccEEEEEeCCCCCCC
Q 036269          193 WQFENEDDSRSNAKFIELGALSRLTSLH-IDIPEGEIMPSD--MSFQNLTSFSITIGGPEEVP  252 (623)
Q Consensus       193 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~-l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~  252 (623)
                                  .+........+++.+. +.+|.++.++.+  ..+++|+.|+++++.....+
T Consensus       167 ------------~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~  217 (242)
T d1xwdc1         167 ------------EIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP  217 (242)
T ss_dssp             ------------EECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCC
T ss_pred             ------------ccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccC
Confidence                        3333444555665554 566778888775  67899999999877654443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.41  E-value=4.6e-13  Score=108.86  Aligned_cols=115  Identities=17%  Similarity=0.165  Sum_probs=96.6

Q ss_pred             cEEEcccCCcccccccCCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCC
Q 036269           39 TGISLMFNDIHEVHEGLQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDC  118 (623)
Q Consensus        39 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~  118 (623)
                      |.|++++|.++.++....+++|++|++++|.+.++|+. |..+++|++|++++|.+   ..+| .+..+++|++|++++|
T Consensus         1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~lp~~-~~~l~~L~~L~l~~N~i---~~l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNAL---ENVD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGG-GGGCTTCCEEECCSSCC---CCCG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCCCCcccccCCCCCEEECCCCccCcchhh-hhhhhcccccccccccc---cccC-ccccccccCeEECCCC
Confidence            67999999999998766899999999999999999876 58999999999999999   6666 4889999999999999


Q ss_pred             cCCCCc---ccccCCcCCcEEEcCCCCCccccc----cccCCCccCEE
Q 036269          119 QHFGDL---SLIGELSLLEILDLSESDVSEIPV----SFGRLGHLRLL  159 (623)
Q Consensus       119 ~~l~~i---~~~~~l~~L~~L~l~~~~i~~lp~----~i~~l~~L~~L  159 (623)
                      . +.++   ..+..+++|++|++++|.++..+.    .+..+++|+.+
T Consensus        76 ~-i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          76 R-LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             C-CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             c-cCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            8 8655   467889999999999998875442    23346777665

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.40  E-value=4.4e-13  Score=119.04  Aligned_cols=126  Identities=20%  Similarity=0.226  Sum_probs=101.8

Q ss_pred             CcEEEcccCCcccccccCCCCCcceEEccCCCCC-CCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEecc
Q 036269           38 LTGISLMFNDIHEVHEGLQCPRLQALFLQKNDLL-DIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLH  116 (623)
Q Consensus        38 l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~-~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~  116 (623)
                      .++++.+++.++.+|+.+. +++++|+|++|.+. .++...|.++++|++|++++|.+.  ...+..+..+++|++|+++
T Consensus        10 ~~~v~Cs~~~L~~iP~~lp-~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~--~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRDIP-LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT--GIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTSCCSSCCSCCC-TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCC--CBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEEeCCCcCccCCCCC-CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccc--cccccccccccccceeeec
Confidence            3567888888888887653 67899999999987 466666789999999999999884  4455677888999999999


Q ss_pred             CCcCCCCc--ccccCCcCCcEEEcCCCCCccccc-cccCCCccCEEeccCCCCC
Q 036269          117 DCQHFGDL--SLIGELSLLEILDLSESDVSEIPV-SFGRLGHLRLLDLTDCYNL  167 (623)
Q Consensus       117 ~~~~l~~i--~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~  167 (623)
                      +|. +..+  ..+.++++|++|+|++|.++.+|. .+..+++|++|+++++...
T Consensus        87 ~N~-l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          87 ENK-IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             SCC-CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             ccc-ccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            998 8777  468889999999999999998764 5778999999999885433

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=3.6e-13  Score=115.33  Aligned_cols=103  Identities=18%  Similarity=0.227  Sum_probs=54.6

Q ss_pred             CCCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCCcCCCCc--ccccCCcC
Q 036269           55 LQCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDL--SLIGELSL  132 (623)
Q Consensus        55 ~~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~  132 (623)
                      .+..++|.|++++|.+..++. ++..+++|++|++++|.+   ..++ .+..+++|++|++++|. +..+  ..+..+++
T Consensus        15 ~n~~~lr~L~L~~n~I~~i~~-~~~~l~~L~~L~Ls~N~i---~~l~-~~~~l~~L~~L~ls~N~-i~~l~~~~~~~l~~   88 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEI---RKLD-GFPLLRRLKTLLVNNNR-ICRIGEGLDQALPD   88 (162)
T ss_dssp             ECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCC---CEEC-CCCCCSSCCEEECCSSC-CCEECSCHHHHCTT
T ss_pred             cCcCcCcEEECCCCCCCccCc-cccccccCCEEECCCCCC---CccC-CcccCcchhhhhccccc-ccCCCccccccccc
Confidence            344556666666666655543 235556666666666655   3332 24455556666666555 5444  12344555


Q ss_pred             CcEEEcCCCCCccccc--cccCCCccCEEeccC
Q 036269          133 LEILDLSESDVSEIPV--SFGRLGHLRLLDLTD  163 (623)
Q Consensus       133 L~~L~l~~~~i~~lp~--~i~~l~~L~~L~l~~  163 (623)
                      |++|++++|.++.++.  .+..+++|++|++++
T Consensus        89 L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~  121 (162)
T d1a9na_          89 LTELILTNNSLVELGDLDPLASLKSLTYLCILR  121 (162)
T ss_dssp             CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCS
T ss_pred             cccceeccccccccccccccccccccchhhcCC
Confidence            5555555555554432  344555555555555

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.31  E-value=4.8e-12  Score=112.17  Aligned_cols=125  Identities=21%  Similarity=0.203  Sum_probs=98.5

Q ss_pred             cceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCC-chhhhccccCcEEeccCCcCCCCc--ccccCCcCCcEE
Q 036269           60 LQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSL-PSSLSFLINLRTLSLHDCQHFGDL--SLIGELSLLEIL  136 (623)
Q Consensus        60 L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~L~~L  136 (623)
                      .++++.++++++.+|.++   .+.+++|++++|.++  ..+ +..|..+++|+.|++++|. +..+  ..+..+++|++|
T Consensus        10 ~~~v~Cs~~~L~~iP~~l---p~~l~~L~Ls~N~i~--~~~~~~~f~~l~~L~~L~L~~N~-i~~~~~~~~~~~~~L~~L   83 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRDI---PLHTTELLLNDNELG--RISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQEL   83 (192)
T ss_dssp             TTEEECTTSCCSSCCSCC---CTTCSEEECCSCCCC--SBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEE
T ss_pred             CCEEEEeCCCcCccCCCC---CCCCCEEEeCCCCCc--ccccccccCCCceEeeeeccccc-ccccccccccccccccee
Confidence            457888888888888765   368889999999884  333 3457788999999998888 7655  677788889999


Q ss_pred             EcCCCCCcccc-ccccCCCccCEEeccCCCCCCcCchhhhhccccCcEEEeccccc
Q 036269          137 DLSESDVSEIP-VSFGRLGHLRLLDLTDCYNLELIPRGVLSRLRKLEELYMSKTFC  191 (623)
Q Consensus       137 ~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~  191 (623)
                      ++++|.++.+| ..|.++++|++|++++ +.++.++.+++..+++|++|++++|.+
T Consensus        84 ~Ls~N~l~~l~~~~F~~l~~L~~L~L~~-N~l~~i~~~~f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_          84 QLGENKIKEISNKMFLGLHQLKTLNLYD-NQISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             ECCSCCCCEECSSSSTTCTTCCEEECCS-SCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             eeccccccccCHHHHhCCCcccccccCC-ccccccCHHHhcCCccccccccccccc
Confidence            99998888775 4578888888888888 667778777678888888888887765

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.26  E-value=1.2e-13  Score=122.74  Aligned_cols=122  Identities=22%  Similarity=0.254  Sum_probs=89.8

Q ss_pred             CCcEEEcccC--CcccccccC-CCCCcceEEccCCCCCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEE
Q 036269           37 DLTGISLMFN--DIHEVHEGL-QCPRLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTL  113 (623)
Q Consensus        37 ~l~~L~l~~~--~~~~l~~~~-~~~~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L  113 (623)
                      ..+.+++++.  .++.++..+ .+++|++|++++|.+.+++.  +.++++|++|++++|.+   ..+|.....+++|++|
T Consensus        24 ~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~~--l~~l~~L~~L~Ls~N~i---~~i~~~~~~~~~L~~L   98 (198)
T d1m9la_          24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS--LSGMENLRILSLGRNLI---KKIENLDAVADTLEEL   98 (198)
T ss_dssp             TCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCCC--HHHHTTCCEEECCEEEE---CSCSSHHHHHHHCCEE
T ss_pred             ccceeeeecccCchhhhhhHHhcccccceeECcccCCCCccc--ccCCccccChhhccccc---cccccccccccccccc
Confidence            3455566543  345555445 67888888888888877764  57888888888888887   6666655666788888


Q ss_pred             eccCCcCCCCcccccCCcCCcEEEcCCCCCcccc--ccccCCCccCEEeccCC
Q 036269          114 SLHDCQHFGDLSLIGELSLLEILDLSESDVSEIP--VSFGRLGHLRLLDLTDC  164 (623)
Q Consensus       114 ~l~~~~~l~~i~~~~~l~~L~~L~l~~~~i~~lp--~~i~~l~~L~~L~l~~~  164 (623)
                      ++++|. ++.++.+..+++|++|++++|.++.++  ..+..+++|++|++++|
T Consensus        99 ~l~~N~-i~~l~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N  150 (198)
T d1m9la_          99 WISYNQ-IASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             ECSEEE-CCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSS
T ss_pred             cccccc-ccccccccccccccccccccchhccccccccccCCCccceeecCCC
Confidence            888887 777766777888888888888887665  35777888888888874

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=8.9e-13  Score=134.79  Aligned_cols=108  Identities=19%  Similarity=0.230  Sum_probs=64.7

Q ss_pred             CCCcEEEcccCCccc--ccccC-CCCCcceEEccCCCCCCC----ChhhHhCCCcccEEEccCCccccc--CCCchhhh-
Q 036269           36 EDLTGISLMFNDIHE--VHEGL-QCPRLQALFLQKNDLLDI----PDPFFQGMKDLKVLDLGGSGVFSL--FSLPSSLS-  105 (623)
Q Consensus        36 ~~l~~L~l~~~~~~~--l~~~~-~~~~L~~L~l~~~~~~~l----~~~~~~~l~~Lr~L~l~~~~~~~~--~~lp~~~~-  105 (623)
                      .+|+.|+++++.++.  +.+.. .++++++|+|++|.+++.    -..++..+++|++|++++|.++..  ..+...+. 
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            356778888877753  23323 567778888888876511    112346777888888887776310  00111111 


Q ss_pred             ccccCcEEeccCCcCCCCc------ccccCCcCCcEEEcCCCCCc
Q 036269          106 FLINLRTLSLHDCQHFGDL------SLIGELSLLEILDLSESDVS  144 (623)
Q Consensus       106 ~l~~L~~L~l~~~~~l~~i------~~~~~l~~L~~L~l~~~~i~  144 (623)
                      ...+|++|++++|. +++.      ..+..+++|++|++++|.+.
T Consensus        82 ~~~~L~~L~L~~n~-it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          82 PSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             TTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             CCCCCCEEECCCCC-ccccccccccchhhccccccccccccccch
Confidence            22467888887776 6432      34566777788887777765

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=5.9e-13  Score=136.16  Aligned_cols=107  Identities=21%  Similarity=0.308  Sum_probs=74.5

Q ss_pred             CcccEEEccCCcccccCCCchhhhccccCcEEeccCCcCCCCc------ccccCCcCCcEEEcCCCCCcc-----ccccc
Q 036269           82 KDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDL------SLIGELSLLEILDLSESDVSE-----IPVSF  150 (623)
Q Consensus        82 ~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~i------~~~~~l~~L~~L~l~~~~i~~-----lp~~i  150 (623)
                      ++|++||++++.++. ..+...+..++++++|++++|. +++.      ..+..+++|++|++++|.++.     +...+
T Consensus         2 ~~l~~ld~~~~~i~~-~~~~~l~~~l~~l~~L~L~~~~-i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l   79 (460)
T d1z7xw1           2 LDIQSLDIQCEELSD-ARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL   79 (460)
T ss_dssp             EEEEEEEEESCCCCH-HHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred             CCCCEEEeeCCcCCh-HHHHHHHHhCCCCCEEEeCCCC-CCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHH
Confidence            368999999999852 2334556788999999999998 7532      446788899999999998862     22233


Q ss_pred             c-CCCccCEEeccCCCCCCcCch----hhhhccccCcEEEeccccc
Q 036269          151 G-RLGHLRLLDLTDCYNLELIPR----GVLSRLRKLEELYMSKTFC  191 (623)
Q Consensus       151 ~-~l~~L~~L~l~~~~~~~~l~~----~~~~~l~~L~~L~l~~~~~  191 (623)
                      . ...+|++|++++|. ++....    ..+..+++|++|++++|.+
T Consensus        80 ~~~~~~L~~L~L~~n~-it~~~~~~l~~~l~~~~~L~~L~L~~N~i  124 (460)
T d1z7xw1          80 QTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLL  124 (460)
T ss_dssp             CSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBC
T ss_pred             hcCCCCCCEEECCCCC-ccccccccccchhhccccccccccccccc
Confidence            2 23578888888864 443321    1245677888888887765

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.09  E-value=2.6e-12  Score=114.01  Aligned_cols=126  Identities=22%  Similarity=0.231  Sum_probs=83.9

Q ss_pred             CCcceEEccCCC--CCCCChhhHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCCcCCCCccc-ccCCcCCc
Q 036269           58 PRLQALFLQKND--LLDIPDPFFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSL-IGELSLLE  134 (623)
Q Consensus        58 ~~L~~L~l~~~~--~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~i~~-~~~l~~L~  134 (623)
                      ..++.+++.+..  +..++.+ +..+++|++|++++|.+   ..++ .+..+++|++|++++|. +++++. ...+++|+
T Consensus        23 ~~~~~~~l~~~~~~i~~l~~s-l~~L~~L~~L~Ls~n~I---~~i~-~l~~l~~L~~L~Ls~N~-i~~i~~~~~~~~~L~   96 (198)
T d1m9la_          23 TEAEKVELHGMIPPIEKMDAT-LSTLKACKHLALSTNNI---EKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLE   96 (198)
T ss_dssp             TTCSCEECCBCCTTCCCCHHH-HHHTTTCCEEECSEEEE---SCCC-CHHHHTTCCEEECCEEE-ECSCSSHHHHHHHCC
T ss_pred             cccceeeeecccCchhhhhhH-HhcccccceeECcccCC---CCcc-cccCCccccChhhcccc-ccccccccccccccc
Confidence            345566665542  3345444 47788888888888887   5554 47778888888888887 766633 33445678


Q ss_pred             EEEcCCCCCccccccccCCCccCEEeccCCCCCCcCch-hhhhccccCcEEEeccccc
Q 036269          135 ILDLSESDVSEIPVSFGRLGHLRLLDLTDCYNLELIPR-GVLSRLRKLEELYMSKTFC  191 (623)
Q Consensus       135 ~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~l~~-~~~~~l~~L~~L~l~~~~~  191 (623)
                      +|++++|.++.++ .+.++++|++|++++ +.++.++. ..+..+++|+.|++++|.+
T Consensus        97 ~L~l~~N~i~~l~-~~~~l~~L~~L~L~~-N~i~~~~~~~~l~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_          97 ELWISYNQIASLS-GIEKLVNLRVLYMSN-NKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             EEECSEEECCCHH-HHHHHHHSSEEEESE-EECCCHHHHHHHTTTTTCSEEEECSSHH
T ss_pred             ccccccccccccc-ccccccccccccccc-chhccccccccccCCCccceeecCCCcc
Confidence            8888877777664 466777777887777 45555542 2366777777777777765

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=2.2e-09  Score=90.63  Aligned_cols=101  Identities=19%  Similarity=0.120  Sum_probs=57.6

Q ss_pred             CcceEEccCCCCCCCChhhHhCCCcccEEEccCC-cccccCCCc-hhhhccccCcEEeccCCcCCCCc--ccccCCcCCc
Q 036269           59 RLQALFLQKNDLLDIPDPFFQGMKDLKVLDLGGS-GVFSLFSLP-SSLSFLINLRTLSLHDCQHFGDL--SLIGELSLLE  134 (623)
Q Consensus        59 ~L~~L~l~~~~~~~l~~~~~~~l~~Lr~L~l~~~-~~~~~~~lp-~~~~~l~~L~~L~l~~~~~l~~i--~~~~~l~~L~  134 (623)
                      ....+++.++...+.|..+ ..+++|++|++.++ .+   +.++ .+|.++++|+.|++++|. ++.+  ..+..+++|+
T Consensus         9 ~~~~l~c~~~~~~~~p~~l-~~l~~l~~L~l~~n~~l---~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~   83 (156)
T d2ifga3           9 GSSGLRCTRDGALDSLHHL-PGAENLTELYIENQQHL---QHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLS   83 (156)
T ss_dssp             SSSCEECCSSCCCTTTTTS-CSCSCCSEEECCSCSSC---CEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCC
T ss_pred             CCCeEEecCCCCccCcccc-cCccccCeeecCCCccc---cccCchhhccccccCcceeeccc-cCCccccccccccccc
Confidence            3344555555555555443 55666666666544 34   3333 335556666666666665 5555  3456666666


Q ss_pred             EEEcCCCCCccccccccCCCccCEEeccCC
Q 036269          135 ILDLSESDVSEIPVSFGRLGHLRLLDLTDC  164 (623)
Q Consensus       135 ~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~  164 (623)
                      +|+|++|.++.+|..+....+|++|+++++
T Consensus        84 ~L~Ls~N~l~~l~~~~~~~~~l~~L~L~~N  113 (156)
T d2ifga3          84 RLNLSFNALESLSWKTVQGLSLQELVLSGN  113 (156)
T ss_dssp             EEECCSSCCSCCCSTTTCSCCCCEEECCSS
T ss_pred             ceeccCCCCcccChhhhccccccccccCCC
Confidence            666666666666655444456667776664

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.88  E-value=1.5e-09  Score=105.64  Aligned_cols=182  Identities=16%  Similarity=0.051  Sum_probs=83.9

Q ss_pred             CCCCcEEEcccCCcc-----cccccC-CCCCcceEEccCCCCCCCC----h------hhHhCCCcccEEEccCCccccc-
Q 036269           35 FEDLTGISLMFNDIH-----EVHEGL-QCPRLQALFLQKNDLLDIP----D------PFFQGMKDLKVLDLGGSGVFSL-   97 (623)
Q Consensus        35 ~~~l~~L~l~~~~~~-----~l~~~~-~~~~L~~L~l~~~~~~~l~----~------~~~~~l~~Lr~L~l~~~~~~~~-   97 (623)
                      ...++.|++++|.++     .+.... ..+.|+.|+++++......    .      ..+..+++|++|++++|.+... 
T Consensus        30 ~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~  109 (344)
T d2ca6a1          30 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  109 (344)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccccc
Confidence            355666666666553     222222 4566666666655433111    1      1134456666666666655310 


Q ss_pred             -CCCchhhhccccCcEEeccCCcCCCCc------c---------cccCCcCCcEEEcCCCCCc-----cccccccCCCcc
Q 036269           98 -FSLPSSLSFLINLRTLSLHDCQHFGDL------S---------LIGELSLLEILDLSESDVS-----EIPVSFGRLGHL  156 (623)
Q Consensus        98 -~~lp~~~~~l~~L~~L~l~~~~~l~~i------~---------~~~~l~~L~~L~l~~~~i~-----~lp~~i~~l~~L  156 (623)
                       ..+...+..+++|++|++++|. ++..      .         .....+.|+.+++++|.+.     .+...+...++|
T Consensus       110 ~~~l~~~l~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L  188 (344)
T d2ca6a1         110 QEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL  188 (344)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred             ccchhhhhcccccchheeccccc-ccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhh
Confidence             0122334455666666666665 4211      0         0123445666666665543     122334445556


Q ss_pred             CEEeccCCCCCCcC-----chhhhhccccCcEEEecccccccccccccccccccccccccCCCCccEEEeecCC
Q 036269          157 RLLDLTDCYNLELI-----PRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGALSRLTSLHIDIPE  225 (623)
Q Consensus       157 ~~L~l~~~~~~~~l-----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  225 (623)
                      +.|++++|. ++..     ....+..+++|+.|++++|.+....       .......+..+++|+.|++++|.
T Consensus       189 ~~L~L~~n~-i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g-------~~~L~~~l~~~~~L~~L~Ls~n~  254 (344)
T d2ca6a1         189 HTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG-------SSALAIALKSWPNLRELGLNDCL  254 (344)
T ss_dssp             CEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH-------HHHHHHHGGGCTTCCEEECTTCC
T ss_pred             ccccccccc-ccccccccchhhhhcchhhhcccccccccccccc-------cccccccccccccchhhhhhcCc
Confidence            666665532 2211     1112344555666666555442100       01222334455555555555554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=6.9e-09  Score=87.48  Aligned_cols=103  Identities=19%  Similarity=0.227  Sum_probs=79.7

Q ss_pred             CcEEEcccCCcccccccC-CCCCcceEEccCCC-CCCCChhhHhCCCcccEEEccCCcccccCCC-chhhhccccCcEEe
Q 036269           38 LTGISLMFNDIHEVHEGL-QCPRLQALFLQKND-LLDIPDPFFQGMKDLKVLDLGGSGVFSLFSL-PSSLSFLINLRTLS  114 (623)
Q Consensus        38 l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~-~~~l~~~~~~~l~~Lr~L~l~~~~~~~~~~l-p~~~~~l~~L~~L~  114 (623)
                      ...++.+++.+.++|..+ .+++|+.|.++++. +..++...|.++++|++|++++|.+   ..+ +.+|..+++|++|+
T Consensus        10 ~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l---~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3          10 SSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL---RFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             SSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCC---CEECTTGGGSCSCCCEEE
T ss_pred             CCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeecccc---CCccccccccccccccee
Confidence            445777777777777666 77889999997664 7778777788899999999999988   555 45688899999999


Q ss_pred             ccCCcCCCCc-ccccCCcCCcEEEcCCCCCc
Q 036269          115 LHDCQHFGDL-SLIGELSLLEILDLSESDVS  144 (623)
Q Consensus       115 l~~~~~l~~i-~~~~~l~~L~~L~l~~~~i~  144 (623)
                      +++|. ++.+ .......+|+.|++++|.+.
T Consensus        87 Ls~N~-l~~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          87 LSFNA-LESLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             CCSSC-CSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             ccCCC-CcccChhhhccccccccccCCCccc
Confidence            99998 8777 33333447999999998764

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.62  E-value=1.4e-08  Score=98.68  Aligned_cols=207  Identities=16%  Similarity=0.155  Sum_probs=138.5

Q ss_pred             CCCCCCcEEEcccCCcccc-----------cccC-CCCCcceEEccCCCCCCCC----hhhHhCCCcccEEEccCCcccc
Q 036269           33 NTFEDLTGISLMFNDIHEV-----------HEGL-QCPRLQALFLQKNDLLDIP----DPFFQGMKDLKVLDLGGSGVFS   96 (623)
Q Consensus        33 ~~~~~l~~L~l~~~~~~~l-----------~~~~-~~~~L~~L~l~~~~~~~l~----~~~~~~l~~Lr~L~l~~~~~~~   96 (623)
                      ...+.++.++++++.....           ...+ .+++|+.|++++|.+....    ...+...++|++|++++|.+..
T Consensus        56 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~  135 (344)
T d2ca6a1          56 ASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGP  135 (344)
T ss_dssp             TTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHH
T ss_pred             HhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccccchhhhhcccccchheecccccccc
Confidence            4557899999987654322           1222 5789999999999887321    1224678999999999997731


Q ss_pred             cC--CCchh---------hhccccCcEEeccCCcCCCCc------ccccCCcCCcEEEcCCCCCcc------ccccccCC
Q 036269           97 LF--SLPSS---------LSFLINLRTLSLHDCQHFGDL------SLIGELSLLEILDLSESDVSE------IPVSFGRL  153 (623)
Q Consensus        97 ~~--~lp~~---------~~~l~~L~~L~l~~~~~l~~i------~~~~~l~~L~~L~l~~~~i~~------lp~~i~~l  153 (623)
                      ..  .+...         ....+.|+.++++++. +.+-      ..+...++|++|++++|.+..      +...+..+
T Consensus       136 ~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~-i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~  214 (344)
T d2ca6a1         136 QAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC  214 (344)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGC
T ss_pred             cccccccccccccccccccccCcccceeeccccc-ccccccccccchhhhhhhhcccccccccccccccccchhhhhcch
Confidence            00  01111         1345789999999987 6432      345677899999999998862      33457788


Q ss_pred             CccCEEeccCCCCCCc-----CchhhhhccccCcEEEecccccccccccccccccccccccccC--CCCccEEEeecCCC
Q 036269          154 GHLRLLDLTDCYNLEL-----IPRGVLSRLRKLEELYMSKTFCHWQFENEDDSRSNAKFIELGA--LSRLTSLHIDIPEG  226 (623)
Q Consensus       154 ~~L~~L~l~~~~~~~~-----l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~--l~~L~~L~l~~~~~  226 (623)
                      ++|+.|++++|. ++.     +.. .+..+++|++|++++|.+....       ...+...+..  ...|+.|++++|.+
T Consensus       215 ~~L~~L~Ls~N~-i~~~g~~~L~~-~l~~~~~L~~L~Ls~n~i~~~g-------~~~l~~~l~~~~~~~L~~L~ls~N~i  285 (344)
T d2ca6a1         215 QELKVLDLQDNT-FTHLGSSALAI-ALKSWPNLRELGLNDCLLSARG-------AAAVVDAFSKLENIGLQTLRLQYNEI  285 (344)
T ss_dssp             TTCCEEECCSSC-CHHHHHHHHHH-HGGGCTTCCEEECTTCCCCHHH-------HHHHHHHHHTCSSCCCCEEECCSSCC
T ss_pred             hhhccccccccc-ccccccccccc-cccccccchhhhhhcCccCchh-------hHHHHHHhhhccCCCCCEEECCCCcC
Confidence            999999999854 332     222 3678899999999999873110       1122233333  45799999999986


Q ss_pred             cc-----CCCc--ccccCccEEEEEeCCCC
Q 036269          227 EI-----MPSD--MSFQNLTSFSITIGGPE  249 (623)
Q Consensus       227 ~~-----~~~~--~~~~~L~~L~l~~~~~~  249 (623)
                      +.     +...  .+.++|+.|+++++...
T Consensus       286 ~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         286 ELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             BHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             ChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            43     2222  35678999998877644

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=1.3e-06  Score=73.59  Aligned_cols=83  Identities=22%  Similarity=0.184  Sum_probs=52.3

Q ss_pred             hHhCCCcccEEEccCCcccccCCCchhhhccccCcEEeccCCcCCCCcccc--cCCcCCcEEEcCCCCCcccc-------
Q 036269           77 FFQGMKDLKVLDLGGSGVFSLFSLPSSLSFLINLRTLSLHDCQHFGDLSLI--GELSLLEILDLSESDVSEIP-------  147 (623)
Q Consensus        77 ~~~~l~~Lr~L~l~~~~~~~~~~lp~~~~~l~~L~~L~l~~~~~l~~i~~~--~~l~~L~~L~l~~~~i~~lp-------  147 (623)
                      ++.+++.|++|++++|.++.+..++..+..+++|++|++++|. ++++..+  .+..+|+.|++++|.+....       
T Consensus        60 ~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~-i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~  138 (162)
T d1koha1          60 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYI  138 (162)
T ss_dssp             HHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSC-CCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHH
T ss_pred             HHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCc-cccchhhhhhhccccceeecCCCCcCcCcccchhHH
Confidence            3456777777777777774222334456677777777777777 7666322  23346777777777765321       


Q ss_pred             -ccccCCCccCEEe
Q 036269          148 -VSFGRLGHLRLLD  160 (623)
Q Consensus       148 -~~i~~l~~L~~L~  160 (623)
                       ..+..+|+|+.||
T Consensus       139 ~~i~~~~P~L~~LD  152 (162)
T d1koha1         139 SAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHTTSTTCCEET
T ss_pred             HHHHHHCCCCCEEC
Confidence             2355678888885

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=4.7e-06  Score=70.13  Aligned_cols=83  Identities=20%  Similarity=0.125  Sum_probs=46.0

Q ss_pred             hhhhccccCcEEeccCCcCCCCc----ccccCCcCCcEEEcCCCCCccccc-cccCCCccCEEeccCCCCCCcCc-----
Q 036269          102 SSLSFLINLRTLSLHDCQHFGDL----SLIGELSLLEILDLSESDVSEIPV-SFGRLGHLRLLDLTDCYNLELIP-----  171 (623)
Q Consensus       102 ~~~~~l~~L~~L~l~~~~~l~~i----~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~~l~-----  171 (623)
                      .....+++|++|++++|. ++++    ..+.++++|+.|++++|.++.++. ...+..+|+.|++.+|.......     
T Consensus        59 ~~~~~~~~L~~L~Ls~N~-i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y  137 (162)
T d1koha1          59 IIEENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTY  137 (162)
T ss_dssp             HHHHHCTTCCCCCCCSSC-CCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHH
T ss_pred             HHHHhCCCCCEeeCCCcc-ccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhH
Confidence            334456677777777776 6544    224456777777777777766553 22234456677776643322211     


Q ss_pred             -hhhhhccccCcEEE
Q 036269          172 -RGVLSRLRKLEELY  185 (623)
Q Consensus       172 -~~~~~~l~~L~~L~  185 (623)
                       ..++..+++|+.|+
T Consensus       138 ~~~i~~~~P~L~~LD  152 (162)
T d1koha1         138 ISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHTTSTTCCEET
T ss_pred             HHHHHHHCCCCCEEC
Confidence             12344566666663

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.06  E-value=0.00032  Score=58.80  Aligned_cols=63  Identities=10%  Similarity=0.013  Sum_probs=30.1

Q ss_pred             hCCCcccEEEccCCccccc--CCCchhhhccccCcEEeccCCcCCCCc------ccccCCcCCcEEEcCCCC
Q 036269           79 QGMKDLKVLDLGGSGVFSL--FSLPSSLSFLINLRTLSLHDCQHFGDL------SLIGELSLLEILDLSESD  142 (623)
Q Consensus        79 ~~l~~Lr~L~l~~~~~~~~--~~lp~~~~~l~~L~~L~l~~~~~l~~i------~~~~~l~~L~~L~l~~~~  142 (623)
                      ...+.|++|++++|.+...  ..+...+...+.|++|++++|. +++-      ..+..-+.|++|++++|.
T Consensus        41 ~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~-i~~~g~~~l~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          41 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF-LTPELLARLLRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB-CCHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred             hhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhh-cchHHHHHHHHHHHhCCcCCEEECCCCc
Confidence            4455566666666655310  1122233444556666666665 4321      234444455555555543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.96  E-value=0.00066  Score=56.76  Aligned_cols=85  Identities=18%  Similarity=0.147  Sum_probs=53.6

Q ss_pred             hCCCcccEEEccCC-ccccc--CCCchhhhccccCcEEeccCCcCCCC-----c-ccccCCcCCcEEEcCCCCCc-----
Q 036269           79 QGMKDLKVLDLGGS-GVFSL--FSLPSSLSFLINLRTLSLHDCQHFGD-----L-SLIGELSLLEILDLSESDVS-----  144 (623)
Q Consensus        79 ~~l~~Lr~L~l~~~-~~~~~--~~lp~~~~~l~~L~~L~l~~~~~l~~-----i-~~~~~l~~L~~L~l~~~~i~-----  144 (623)
                      .+.+.|++|+++++ .+...  ..+-..+...++|++|++++|. +++     + ..+...+.|++|++++|.++     
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~-l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~   90 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESNFLTPELLA   90 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccc-cchhHHHHHhhhhhhcccccceeeehhhcchHHHH
Confidence            45677888888764 34210  1133345566788888888887 643     1 34555677888888888776     


Q ss_pred             cccccccCCCccCEEeccCC
Q 036269          145 EIPVSFGRLGHLRLLDLTDC  164 (623)
Q Consensus       145 ~lp~~i~~l~~L~~L~l~~~  164 (623)
                      .+-..+..-+.|++|+++++
T Consensus        91 ~l~~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          91 RLLRSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             HHHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHHhCCcCCEEECCCC
Confidence            23345666677778877763

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.31  E-value=0.0015  Score=54.37  Aligned_cols=41  Identities=17%  Similarity=0.193  Sum_probs=19.0

Q ss_pred             hCCCcccEEEccCCccccc--CCCchhhhccccCcEEeccCCc
Q 036269           79 QGMKDLKVLDLGGSGVFSL--FSLPSSLSFLINLRTLSLHDCQ  119 (623)
Q Consensus        79 ~~l~~Lr~L~l~~~~~~~~--~~lp~~~~~l~~L~~L~l~~~~  119 (623)
                      .+.++|++|++++|.+...  ..+-..+...+.++.+++++|.
T Consensus        43 ~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~   85 (166)
T d1io0a_          43 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF   85 (166)
T ss_dssp             TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred             hcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccc
Confidence            4555566666665554310  0111223344555555555554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.19  E-value=0.00087  Score=55.96  Aligned_cols=41  Identities=12%  Similarity=0.122  Sum_probs=17.5

Q ss_pred             hCCCcccEEEccC-Cccccc--CCCchhhhccccCcEEeccCCc
Q 036269           79 QGMKDLKVLDLGG-SGVFSL--FSLPSSLSFLINLRTLSLHDCQ  119 (623)
Q Consensus        79 ~~l~~Lr~L~l~~-~~~~~~--~~lp~~~~~l~~L~~L~l~~~~  119 (623)
                      .+.+.|++|++++ +.++..  ..+-.++...++|+.|++++|.
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~   57 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR   57 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCc
Confidence            3445555555554 223200  0122223344555555555554