Citrus Sinensis ID: 036277

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240------
AASALSNPLLPISLIFPQVNLETTGRSGENEKIKMKNGSVAMTLTVALVLALAVSLANGDESEKVIVKKVKGKKVCIKGWECPTWSKFCCNETISDYFQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWYACTFYIFIIVLLFKFQLLDMNLPCNFYC
cccccccccccEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccEEEEc
cccccccccccEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEccccccccccHHHcccccccHcccHHHHHHHHHHcccccccccccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHcccccccccccHHHccccccEccccccccccccccccccccccccEcccccEEEccccHHHHHHcccccccHHHHccccEEEEEc
aasalsnpllpislifpqvnlettgrsgenekikmknGSVAMTLTVALVLALAVSLANGDESEKVIVKKVKGkkvcikgwecptwskfccnetISDYFQVYQFEnffskrntpvahavgfwdyqSFITATvkyqplgfgttgtkLDKMKEICAFLAHVgcktscgygvatggplawglcynhemspsqsycddsykytypctpgaeyygrgaipiyWYACTFYIFIIVLLFKFQLldmnlpcnfyc
aasalsnpllpislifpqvnlettgrsgenekikMKNGSVAMTLTVALVLALAVslangdesekvivkkvkgkkvcikgwecptwskfCCNETISDYFQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWYACTFYIFIIVLLFKFQLLDMNLPCNFYC
AASALSNPLLPISLIFPQVNLETTGRSGENEKIKMKNGsvamtltvalvlalavslaNGDESEkvivkkvkgkkvcikgWECPTWSKFCCNETISDYFQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWYACTFYIFIIVLLFKFQLLDMNLPCNFYC
********LLPISLIFPQVNL****************GSVAMTLTVALVLALAVSLANGDESEKVIVKKVKGKKVCIKGWECPTWSKFCCNETISDYFQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWYACTFYIFIIVLLFKFQLLDMNLPCNFY*
******N*LLPISLIFP*********************SVAMTLTVALVLALAVSLANGDESEKV**KKVKGKKVCIKGWECPTWSKFCCNETISDYFQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWYACTFYIFIIVLLFKFQLLDMNLPCNFYC
AASALSNPLLPISLIFPQVNLETTGRSGENEKIKMKNGSVAMTLTVALVLALAVSLANGDESEKVIVKKVKGKKVCIKGWECPTWSKFCCNETISDYFQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWYACTFYIFIIVLLFKFQLLDMNLPCNFYC
****LSNPLLPISLIFPQV***********EKIKMKNGSVAMTLTVALVLALAVSLANGDESEKVIVKKVKGKKVCIKGWECPTWSKFCCNETISDYFQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWYACTFYIFIIVLLFKFQLLDMNLPCNFYC
oooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooo
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
AASALSNPLLPISLIFPQVNLETTGRSGENEKIKMKNGSVAMTLTVALVLALAVSLANGDESEKVIVKKVKGKKVCIKGWECPTWSKFCCNETISDYFQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWYACTFYIFIIVLLFKFQLLDMNLPCNFYC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query246 2.2.26 [Sep-21-2011]
Q9MA41 321 Chitinase-like protein 1 yes no 0.739 0.566 0.681 2e-73
Q9LSP9 333 Chitinase-like protein 2 no no 0.772 0.570 0.643 4e-71
Q05537246 Basic endochitinase (Frag N/A no 0.487 0.487 0.411 9e-19
P19171 335 Basic endochitinase B OS= no no 0.487 0.358 0.370 1e-18
Q5NB11290 Chitinase 10 OS=Oryza sat no no 0.455 0.386 0.391 4e-18
P85084243 Endochitinase OS=Carica p N/A no 0.451 0.456 0.391 9e-18
Q09023 322 Endochitinase CH25 OS=Bra N/A no 0.487 0.372 0.370 1e-17
Q39799 324 Endochitinase 1 OS=Gossyp N/A no 0.451 0.342 0.405 5e-17
Q39785 302 Endochitinase 2 (Fragment N/A no 0.451 0.367 0.405 5e-17
P36361 327 Endochitinase CH5B OS=Pha N/A no 0.715 0.538 0.314 8e-17
>sp|Q9MA41|CTL1_ARATH Chitinase-like protein 1 OS=Arabidopsis thaliana GN=CTL1 PE=1 SV=1 Back     alignment and function desciption
 Score =  275 bits (704), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 126/185 (68%), Positives = 150/185 (81%), Gaps = 3/185 (1%)

Query: 33  IKMKNGSVAMTLTVALVLALAVSLANGDESEKVIVKKVKGKKVCIKGWECPTWSKFCCNE 92
           + +++GS+   + V L ++    +ANG E + + VKKV+G KVC +GWEC  WSK+CCN+
Sbjct: 2   VTIRSGSI--VILVLLAVSFLALVANG-EDKTIKVKKVRGNKVCTQGWECSWWSKYCCNQ 58

Query: 93  TISDYFQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEIC 152
           TISDYFQVYQFE  FSKRNTP+AHAVGFWDYQSFITA   ++PLGFGTTG KL   KE+ 
Sbjct: 59  TISDYFQVYQFEQLFSKRNTPIAHAVGFWDYQSFITAAALFEPLGFGTTGGKLMGQKEMA 118

Query: 153 AFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGA 212
           AFL HV  KTSCGYGVATGGPLAWGLCYN EMSP QSYCD+S+K+ YPC+PGAEYYGRGA
Sbjct: 119 AFLGHVASKTSCGYGVATGGPLAWGLCYNREMSPMQSYCDESWKFKYPCSPGAEYYGRGA 178

Query: 213 IPIYW 217
           +PIYW
Sbjct: 179 LPIYW 183
No chitinase activity. Essential for normal plant growth and development. Regulates cell expansion extent and differentiation at least in roots and hypocotyls. Prevents lignin accumulation in the pith. May modulate ethylene-mediated regulation during development. Probably required to establish thermotolerance acclimation. Plays a role for controlled anisotropic cell expansion in the regulation of waving during root gravitropism and thigmotropism. Involved in the root system architecture adaptation to multiple environmental conditions such as nitrate. Contributes to salt tolerance and possibly to drought by preventing the overaccumulation of sodium ions.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LSP9|CTL2_ARATH Chitinase-like protein 2 OS=Arabidopsis thaliana GN=CTL2 PE=2 SV=1 Back     alignment and function description
>sp|Q05537|CHID_SOLLC Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1 Back     alignment and function description
>sp|P19171|CHIB_ARATH Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3 Back     alignment and function description
>sp|Q5NB11|CHI10_ORYSJ Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1 Back     alignment and function description
>sp|P85084|CHIT_CARPA Endochitinase OS=Carica papaya PE=1 SV=1 Back     alignment and function description
>sp|Q09023|CHI2_BRANA Endochitinase CH25 OS=Brassica napus PE=2 SV=1 Back     alignment and function description
>sp|Q39799|CHI1_GOSHI Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1 Back     alignment and function description
>sp|Q39785|CHI2_GOSHI Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2 Back     alignment and function description
>sp|P36361|CHI5_PHAVU Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query246
255549220321 chitinase, putative [Ricinus communis] g 0.817 0.626 0.661 2e-75
225433728316 PREDICTED: chitinase-like protein 2 [Vit 0.756 0.588 0.708 3e-74
34016877316 chitinase-like protein [Gossypium hirsut 0.829 0.645 0.666 6e-74
34016875318 chitinase-like protein [Gossypium hirsut 0.691 0.534 0.741 6e-73
119657122316 CLT3 [Gossypium barbadense] 0.691 0.537 0.747 9e-73
119657124316 CLT4 [Gossypium barbadense] 0.829 0.645 0.661 2e-72
297848858321 pom-pom1 [Arabidopsis lyrata subsp. lyra 0.739 0.566 0.681 2e-72
222139390322 class II chitinase [Pyrus pyrifolia] 0.825 0.630 0.644 3e-72
224131456295 predicted protein [Populus trichocarpa] 0.646 0.538 0.792 5e-72
118488092319 unknown [Populus trichocarpa] 0.646 0.498 0.792 6e-72
>gi|255549220|ref|XP_002515664.1| chitinase, putative [Ricinus communis] gi|223545207|gb|EEF46716.1| chitinase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  287 bits (735), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 135/204 (66%), Positives = 160/204 (78%), Gaps = 3/204 (1%)

Query: 44  LTVALVLALAVSLANGDESEKVIVKKVKGKKVCIKGWECPTWSKFCCNETISDYFQVYQF 103
           +  AL++A    L NGD+SEK +VK V+GKKVC +GWEC +WS++CCN+TISD+FQ YQF
Sbjct: 10  IIAALLVANWGLLTNGDDSEKTVVKMVRGKKVCTRGWECASWSEYCCNQTISDFFQTYQF 69

Query: 104 ENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTS 163
           EN FSKRN PVAHA+GFWDYQSFITA+  +QPLGF TTG KL +MKE+ AF +HVG KTS
Sbjct: 70  ENLFSKRNAPVAHAIGFWDYQSFITASALFQPLGFCTTGGKLMQMKELAAFFSHVGSKTS 129

Query: 164 CGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYW---YAC 220
           CGYGVATGGPLA+GLCYN EMSPSQSYCDD YK+TYPCTPGAEYYGRGA+PIYW   Y  
Sbjct: 130 CGYGVATGGPLAYGLCYNREMSPSQSYCDDFYKFTYPCTPGAEYYGRGALPIYWNYNYGA 189

Query: 221 TFYIFIIVLLFKFQLLDMNLPCNF 244
           T     + LL   + ++ N    F
Sbjct: 190 TGEALKVNLLDHPEYIEQNATLAF 213

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225433728|ref|XP_002269474.1| PREDICTED: chitinase-like protein 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|34016877|gb|AAQ56599.1| chitinase-like protein [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|34016875|gb|AAQ56598.1| chitinase-like protein [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|119657122|gb|ABL86685.1| CLT3 [Gossypium barbadense] Back     alignment and taxonomy information
>gi|119657124|gb|ABL86686.1| CLT4 [Gossypium barbadense] Back     alignment and taxonomy information
>gi|297848858|ref|XP_002892310.1| pom-pom1 [Arabidopsis lyrata subsp. lyrata] gi|297338152|gb|EFH68569.1| pom-pom1 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|222139390|gb|ACM45714.1| class II chitinase [Pyrus pyrifolia] Back     alignment and taxonomy information
>gi|224131456|ref|XP_002321089.1| predicted protein [Populus trichocarpa] gi|222861862|gb|EEE99404.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|118488092|gb|ABK95866.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query246
TAIR|locus:2198688 321 POM1 "POM-POM1" [Arabidopsis t 0.560 0.429 0.789 1.2e-63
TAIR|locus:2204918272 AT1G02360 [Arabidopsis thalian 0.439 0.397 0.419 9.2e-20
TAIR|locus:2133412280 AT4G01700 [Arabidopsis thalian 0.455 0.4 0.373 1.5e-19
UNIPROTKB|Q9FRV1321 rsca "Basic endochitinase A" [ 0.443 0.339 0.380 4.6e-18
UNIPROTKB|Q7DNA1 340 Cht2 "Chitinase 2" [Oryza sati 0.443 0.320 0.371 1e-17
UNIPROTKB|Q9FRV0266 rscc "Basic endochitinase C" [ 0.483 0.447 0.349 1.2e-17
UNIPROTKB|P24626320 Cht3 "Chitinase 3" [Oryza sati 0.455 0.35 0.372 1e-14
UNIPROTKB|Q42993323 Cht1 "Chitinase 1" [Oryza sati 0.455 0.346 0.352 2.3e-14
UNIPROTKB|P25765326 Cht12 "Chitinase 12" [Oryza sa 0.443 0.334 0.353 9e-14
UNIPROTKB|O04138285 Cht4 "Chitinase 4" [Oryza sati 0.398 0.343 0.372 1.6e-09
TAIR|locus:2198688 POM1 "POM-POM1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
 Identities = 109/138 (78%), Positives = 120/138 (86%)

Query:    80 WECPTWSKFCCNETISDYFQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFG 139
             WEC  WSK+CCN+TISDYFQVYQFE  FSKRNTP+AHAVGFWDYQSFITA   ++PLGFG
Sbjct:    46 WECSWWSKYCCNQTISDYFQVYQFEQLFSKRNTPIAHAVGFWDYQSFITAAALFEPLGFG 105

Query:   140 TTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTY 199
             TTG KL   KE+ AFL HV  KTSCGYGVATGGPLAWGLCYN EMSP QSYCD+S+K+ Y
Sbjct:   106 TTGGKLMGQKEMAAFLGHVASKTSCGYGVATGGPLAWGLCYNREMSPMQSYCDESWKFKY 165

Query:   200 PCTPGAEYYGRGAIPIYW 217
             PC+PGAEYYGRGA+PIYW
Sbjct:   166 PCSPGAEYYGRGALPIYW 183
GO:0004568 "chitinase activity" evidence=IEA;ISS;IDA
GO:0005576 "extracellular region" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA
GO:0016998 "cell wall macromolecule catabolic process" evidence=IEA
GO:0009408 "response to heat" evidence=IMP
GO:0009735 "response to cytokinin stimulus" evidence=IMP
GO:0009809 "lignin biosynthetic process" evidence=IGI
GO:0043255 "regulation of carbohydrate biosynthetic process" evidence=IGI
GO:0009414 "response to water deprivation" evidence=IMP
GO:0009651 "response to salt stress" evidence=RCA;IMP
GO:0010337 "regulation of salicylic acid metabolic process" evidence=IMP
GO:0010167 "response to nitrate" evidence=IMP
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0030244 "cellulose biosynthetic process" evidence=IMP
GO:0030247 "polysaccharide binding" evidence=IDA
GO:0048046 "apoplast" evidence=IDA
GO:0000271 "polysaccharide biosynthetic process" evidence=RCA
GO:0006096 "glycolysis" evidence=RCA
GO:0006816 "calcium ion transport" evidence=RCA
GO:0006833 "water transport" evidence=RCA
GO:0006972 "hyperosmotic response" evidence=RCA
GO:0007030 "Golgi organization" evidence=RCA
GO:0007389 "pattern specification process" evidence=RCA
GO:0008361 "regulation of cell size" evidence=RCA
GO:0009266 "response to temperature stimulus" evidence=RCA
GO:0009269 "response to desiccation" evidence=RCA
GO:0009409 "response to cold" evidence=RCA
GO:0009611 "response to wounding" evidence=RCA
GO:0009737 "response to abscisic acid stimulus" evidence=RCA
GO:0009750 "response to fructose stimulus" evidence=RCA
GO:0009805 "coumarin biosynthetic process" evidence=RCA
GO:0009825 "multidimensional cell growth" evidence=IMP;RCA
GO:0009926 "auxin polar transport" evidence=RCA
GO:0009932 "cell tip growth" evidence=RCA
GO:0010015 "root morphogenesis" evidence=RCA
GO:0010075 "regulation of meristem growth" evidence=RCA
GO:0010817 "regulation of hormone levels" evidence=RCA
GO:0016051 "carbohydrate biosynthetic process" evidence=RCA
GO:0019344 "cysteine biosynthetic process" evidence=RCA
GO:0019761 "glucosinolate biosynthetic process" evidence=RCA
GO:0030243 "cellulose metabolic process" evidence=RCA
GO:0040007 "growth" evidence=RCA
GO:0042742 "defense response to bacterium" evidence=RCA
GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA
GO:0046686 "response to cadmium ion" evidence=RCA
GO:0048765 "root hair cell differentiation" evidence=RCA
GO:0048767 "root hair elongation" evidence=RCA
GO:0071555 "cell wall organization" evidence=RCA
GO:0010053 "root epidermal cell differentiation" evidence=IMP
TAIR|locus:2204918 AT1G02360 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2133412 AT4G01700 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9FRV1 rsca "Basic endochitinase A" [Secale cereale (taxid:4550)] Back     alignment and assigned GO terms
UNIPROTKB|Q7DNA1 Cht2 "Chitinase 2" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q9FRV0 rscc "Basic endochitinase C" [Secale cereale (taxid:4550)] Back     alignment and assigned GO terms
UNIPROTKB|P24626 Cht3 "Chitinase 3" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q42993 Cht1 "Chitinase 1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|P25765 Cht12 "Chitinase 12" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|O04138 Cht4 "Chitinase 4" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00033575001
SubName- Full=Chromosome chr5 scaffold_67, whole genome shotgun sequence; (316 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query246
cd00325230 cd00325, chitinase_glyco_hydro_19, Glycoside hydro 6e-45
pfam00182232 pfam00182, Glyco_hydro_19, Chitinase class I 3e-26
>gnl|CDD|238199 cd00325, chitinase_glyco_hydro_19, Glycoside hydrolase family 19 chitinase domain Back     alignment and domain information 
 Score =  150 bits (380), Expect = 6e-45
 Identities = 52/120 (43%), Positives = 63/120 (52%), Gaps = 5/120 (4%)

Query: 98  FQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAH 157
                FE  FS RN     A GF+ Y +FITA   +   GFGTTG    + +EI AF AH
Sbjct: 1   VTESLFEGIFSHRNDSGCPAKGFYTYDAFITAANSFP--GFGTTGDDDTRKREIAAFFAH 58

Query: 158 VGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYW 217
              +T  G  +A  GP AWG C   E  P  SYCD +    +PC PG +YYGRG I + W
Sbjct: 59  TSHETGGGCYIAPDGPYAWGYCDKSETGPPSSYCDPA---QWPCAPGKKYYGRGPIQLSW 115

Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Family 19 chitinases are found primarily in plants (classes I, III, and IV), but some are found in bacteria. Class I and II chitinases are similar in their catalytic domains. Class I chitinases have an N-terminal cysteine-rich, chitin-binding domain which is separated from the catalytic domain by a proline and glycine-rich hinge region. Class II chitinases lack both the chitin-binding domain and the hinge region. Class IV chitinases are similar to class I chitinases but they are smaller in size due to certain deletions. Despite any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different enzyme groups arose from a common ancestor glycohydrolase antecedent to the procaryotic/eucaryotic divergence. Length = 230
>gnl|CDD|201064 pfam00182, Glyco_hydro_19, Chitinase class I Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 246
KOG4742286 consensus Predicted chitinase [General function pr 100.0
PF00182232 Glyco_hydro_19: Chitinase class I; InterPro: IPR00 100.0
cd00325230 chitinase_glyco_hydro_19 Glycoside hydrolase famil 100.0
cd00442105 lysozyme_like lysozyme_like domain. This contains 98.85
COG3179206 Predicted chitinase [General function prediction o 98.31
PF0018740 Chitin_bind_1: Chitin recognition protein; InterPr 95.6
smart0027038 ChtBD1 Chitin binding domain. 94.67
cd0003540 ChtBD1 Chitin binding domain, involved in recognit 90.77
>KOG4742 consensus Predicted chitinase [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=3.9e-55  Score=398.92  Aligned_cols=179  Identities=35%  Similarity=0.572  Sum_probs=160.6

Q ss_pred             HHHhhCCCCccceeEEeecCCcCCCCCCCCCCCccccCCCCcccccCHHHHHHHHcCCCCCCccCCcccchHHHHHhhhc
Q 036277           53 AVSLANGDESEKVIVKKVKGKKVCIKGWECPTWSKFCCNETISDYFQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVK  132 (246)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~ag~a~C~~g~cCs~~~~YCc~~~V~siiT~~~Fd~lfp~Rn~~~c~a~GFYTY~aFI~AA~~  132 (246)
                      ++.++..++.....+..+.++..|..| +|+++.++|+.++|+++||+++||+||+++++++||++|||||++||+|+++
T Consensus        22 ~~~~~~~q~~~~~~~~~~~~~~~c~~g-~c~~~~~~~p~~~i~~~~T~~~F~~i~~~~~~g~c~~~gfyty~aFi~Aa~s  100 (286)
T KOG4742|consen   22 SSSTVASQNCGASNTTPPYCKFGCGPG-PCSGPGPPNPASKIESSVTPELFEDIFSKVGSGWCPAKGFYTYDAFIIAARS  100 (286)
T ss_pred             HHHhhhcccCCCCccccccccCCCCCC-CCCCCCCCCCcccccccccHHHHHHHhccccCCCCCCCCCccccHHHHHHHh
Confidence            344444444322236677899999999 9999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCccccCCcchhhhHHHHHHhhhhccCCCCccccCCCCccccceeeeecCC-CCCCcCCCCCCCCCCCCCCccccCC
Q 036277          133 YQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSP-SQSYCDDSYKYTYPCTPGAEYYGRG  211 (246)
Q Consensus       133 Fp~~~FgttG~~~~~KRElAAFLAhvshET~gGw~~Ap~Gp~aWGlcy~eEi~~-~~~YC~~s~~~~yPCapGk~YyGRG  211 (246)
                      ||  +|++||+..+.|||+||||||++|||+|||..+++|||+|+|||++|+++ ...||+.+++..|||++||.|||||
T Consensus       101 fp--~fg~t~~~~~~kreiAaf~ah~~~ETs~g~~~~~~G~~~~~fc~~~e~s~~~~~YC~~s~~~~yPCs~gk~Y~GRG  178 (286)
T KOG4742|consen  101 FP--EFGGTGNKNTAKREIAAFFAHVTHETSGGSNCAPRGPFYWGFCYKEEISPSSGRYCDASNQITYPCSPGKSYYGRG  178 (286)
T ss_pred             cc--cccccCcccccchhhhhhhhhheecccCcccccCCCccccCcccccccChhhhccCCcccceEeecCCCCcccccC
Confidence            99  99999999999999999999999999999999999999999999999998 7899999875449999999999999


Q ss_pred             CCcccccchhHHHHHHHHhhhhhccc
Q 036277          212 AIPIYWYACTFYIFIIVLLFKFQLLD  237 (246)
Q Consensus       212 pIQLSWNYNYg~fs~~v~~~k~~~~~  237 (246)
                      |||||||||||++.   +.+|.+||+
T Consensus       179 ~iQlsWNyNYG~ag---~alg~dLL~  201 (286)
T KOG4742|consen  179 PIQLSWNYNYGAAG---KALGLDLLR  201 (286)
T ss_pred             cccccccccccHhH---hhcCchhhc
Confidence            99999999999997   455555553

>PF00182 Glyco_hydro_19: Chitinase class I; InterPro: IPR000726 O-Glycosyl hydrolases 3 Back     alignment and domain information
>cd00325 chitinase_glyco_hydro_19 Glycoside hydrolase family 19 chitinase domain Back     alignment and domain information
>cd00442 lysozyme_like lysozyme_like domain Back     alignment and domain information
>COG3179 Predicted chitinase [General function prediction only] Back     alignment and domain information
>PF00187 Chitin_bind_1: Chitin recognition protein; InterPro: IPR001002 A number of plant and fungal proteins that bind N-acetylglucosamine (e Back     alignment and domain information
>smart00270 ChtBD1 Chitin binding domain Back     alignment and domain information
>cd00035 ChtBD1 Chitin binding domain, involved in recognition or binding of chitin subunits; fold analogous to hevein; occurs in plant and fungal proteins that bind N-acetylglucosamine, plant endochitinases, wound-induced proteins, and K Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query246
3cql_A243 Crystal Structure Of Gh Family 19 Chitinase From Ca 3e-19
4dwx_A244 Crystal Structure Of A Family Gh-19 Chitinase From 2e-16
1dxj_A242 Structure Of The Chitinase From Jack Bean Length = 3e-16
2z37_A244 Crystal Structure Of Brassica Juncea Chitinase Cata 7e-16
2z38_A247 Crystal Structure Of Chloride Bound Brassica Juncea 7e-16
3w3e_A242 Structure Of Vigna Unguiculata Chitinase With Regul 8e-16
1cns_A243 Crystal Structure Of Chitinase At 1.91a Resolution 2e-15
2baa_A243 The Refined Crystal Structure Of An Endochitinase F 2e-15
2z39_A246 Crystal Structure Of Brassica Juncea Chitinase Cata 4e-15
2dkv_A 309 Crystal Structure Of Class I Chitinase From Oryza S 2e-12
3hbd_A204 Class Iv Chitinase Structure From Picea Abies At 1. 6e-11
2cjl_A204 Crystal Structure And Enzymatic Properties Of A Bac 1e-05
1wvv_A265 Crystal Structure Of Chitinase C Mutant E147q Lengt 2e-04
1wvu_A265 Crystal Structure Of Chitinase C From Streptomyces 2e-04
>pdb|3CQL|A Chain A, Crystal Structure Of Gh Family 19 Chitinase From Carica Papaya Length = 243 Back     alignment and structure 
Iteration: 1

 Score = 92.0 bits (227), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 49/124 (39%), Positives = 64/124 (51%), Gaps = 4/124 (3%)
Query: 94  ISDYFQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICA 153
           I        F+     RN P   A GF+ Y +FI A   +    FGTTG+   + +EI A
Sbjct: 2   IEKIISRSMFDQMLKHRNNPACPAKGFYTYDAFIAAAKSFP--SFGTTGSTDVRKREIAA 59
Query: 154 FLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAI 213
           FL     +T+ G+  A  GP AWG C+  E +PS +YC  S +  YPC PG  YYGRG I
Sbjct: 60  FLGQTSHETTGGWPSAPDGPYAWGYCFLKERNPSSNYCAPSPR--YPCAPGKSYYGRGPI 117
Query: 214 PIYW 217
            + W
Sbjct: 118 QLSW 121
>pdb|4DWX|A Chain A, Crystal Structure Of A Family Gh-19 Chitinase From Rye Seeds Length = 244 Back     alignment and structure
>pdb|1DXJ|A Chain A, Structure Of The Chitinase From Jack Bean Length = 242 Back     alignment and structure
>pdb|2Z37|A Chain A, Crystal Structure Of Brassica Juncea Chitinase Catalytic Module (Bjchi3) Length = 244 Back     alignment and structure
>pdb|2Z38|A Chain A, Crystal Structure Of Chloride Bound Brassica Juncea Chitinase Catalytic Module (Bjchi3) Length = 247 Back     alignment and structure
>pdb|3W3E|A Chain A, Structure Of Vigna Unguiculata Chitinase With Regulation Activity Of The Plant Cell Wall Length = 242 Back     alignment and structure
>pdb|1CNS|A Chain A, Crystal Structure Of Chitinase At 1.91a Resolution Length = 243 Back     alignment and structure
>pdb|2BAA|A Chain A, The Refined Crystal Structure Of An Endochitinase From Hordeum Vulgare L. Seeds To 1.8 Angstroms Resolution Length = 243 Back     alignment and structure
>pdb|2Z39|A Chain A, Crystal Structure Of Brassica Juncea Chitinase Catalytic Module Glu234ala Mutant (bjchi3-e234a) Length = 246 Back     alignment and structure
>pdb|2DKV|A Chain A, Crystal Structure Of Class I Chitinase From Oryza Sativa L. Japonica Length = 309 Back     alignment and structure
>pdb|3HBD|A Chain A, Class Iv Chitinase Structure From Picea Abies At 1.8a Length = 204 Back     alignment and structure
>pdb|2CJL|A Chain A, Crystal Structure And Enzymatic Properties Of A Bacterial Family 19 Chitinase Reveal Differences With Plant Enzymes Length = 204 Back     alignment and structure
>pdb|1WVV|A Chain A, Crystal Structure Of Chitinase C Mutant E147q Length = 265 Back     alignment and structure
>pdb|1WVU|A Chain A, Crystal Structure Of Chitinase C From Streptomyces Griseus Hut6037 Length = 265 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query246
2z37_A244 Chitinase; family 19, conformational changes, hydr 2e-29
3cql_A243 Endochitinase; glycosyl hydrolase, N-acetyl-D-gluc 7e-28
1dxj_A242 Class II chitinase; hydrolase, family 19 glycosida 5e-26
3hbe_X204 Class IV chitinase CHIA4-PA2; endochitinase, famil 2e-19
2dkv_A 309 Chitinase; whole structure, oryza sativa L. japoni 1e-16
2cjl_A204 Chitinase G, secreted chitinase; hydrolase, plant 4e-14
1wvv_A265 Chitinase C; family 19 chitinase, whole structure, 2e-11
>2z37_A Chitinase; family 19, conformational changes, hydrolase; 1.53A {Brassica juncea} PDB: 2z38_A 2z39_A Length = 244 Back     alignment and structure
 Score =  109 bits (273), Expect = 2e-29
 Identities = 45/124 (36%), Positives = 59/124 (47%), Gaps = 3/124 (2%)

Query: 94  ISDYFQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICA 153
           +S      QF       N    HAVGF+ Y +FITA   +    FG TG    + KEI A
Sbjct: 2   LSGIISRDQFYKMLKHMNDNDCHAVGFFTYDAFITAAKSFP--SFGNTGDLAMRKKEIAA 59

Query: 154 FLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAI 213
           F      +T+ G+  A  G   WG CY  E+  S  +CD +    +PC PG  YYGRG +
Sbjct: 60  FFGQTSHETTGGWSGAPDGANTWGYCYKEEIDKSDPHCDSNNL-EWPCAPGKFYYGRGPM 118

Query: 214 PIYW 217
            + W
Sbjct: 119 MLSW 122
>3cql_A Endochitinase; glycosyl hydrolase, N-acetyl-D-glucosamine, carbo metabolism, chitin degradation, chitin-binding, glycosidase hydrolase; HET: NDG NAG; 1.50A {Carica papaya} PDB: 1cns_A 2baa_A Length = 243 Back     alignment and structure
>1dxj_A Class II chitinase; hydrolase, family 19 glycosidase, alpha helical protein; 1.8A {Canavalia ensiformis} SCOP: d.2.1.1 Length = 242 Back     alignment and structure
>3hbe_X Class IV chitinase CHIA4-PA2; endochitinase, family 19, conformational changes, chitin-binding, glycosidase, hydrolase; 1.55A {Picea abies} PDB: 3hbd_A 3hbh_A Length = 204 Back     alignment and structure
>2dkv_A Chitinase; whole structure, oryza sativa L. japonica, hydrolase; HET: MES; 2.00A {Oryza sativa japonica group} PDB: 3iwr_A* Length = 309 Back     alignment and structure
>2cjl_A Chitinase G, secreted chitinase; hydrolase, plant enzymes; 1.5A {Streptomyces coelicolor} Length = 204 Back     alignment and structure
>1wvv_A Chitinase C; family 19 chitinase, whole structure, hydrolase; 2.00A {Streptomyces griseus} PDB: 1wvu_A 2dbt_A* 2d49_A Length = 265 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query246
2dkv_A 309 Chitinase; whole structure, oryza sativa L. japoni 100.0
3w3e_A242 Cotyledoneous yieldin-like protein; alpha helical 100.0
3cql_A243 Endochitinase; glycosyl hydrolase, N-acetyl-D-gluc 100.0
2z37_A244 Chitinase; family 19, conformational changes, hydr 100.0
1dxj_A242 Class II chitinase; hydrolase, family 19 glycosida 100.0
3hbe_X204 Class IV chitinase CHIA4-PA2; endochitinase, famil 100.0
2cjl_A204 Chitinase G, secreted chitinase; hydrolase, plant 100.0
1wvv_A265 Chitinase C; family 19 chitinase, whole structure, 100.0
1wkx_A43 Hevein isoform 2; allergen, lectin, agglutinin-tox 96.54
2kus_A35 SM-AMP-1.1A; plant antimicrobial peptide, chitin-b 96.03
2lb7_A44 WAMP-1A, antimicrobial peptide 1A; antimicrobial p 95.95
1mmc_A30 AC-AMP2, antimicrobial peptide 2; antifungal antim 95.03
1p9g_A41 EAFP 2; antifungal peptide, atomic resolution, ant 91.76
1en2_A89 UDA, agglutinin isolectin I/agglutinin isolectin V 91.05
1uha_A82 Lectin-D2; chitin-binding domain, sugar binding pr 89.99
1ulk_A126 Lectin-C; chitin-binding protein, hevein domain, P 87.56
1uha_A82 Lectin-D2; chitin-binding domain, sugar binding pr 84.6
1en2_A89 UDA, agglutinin isolectin I/agglutinin isolectin V 82.27
1ulk_A126 Lectin-C; chitin-binding protein, hevein domain, P 80.2
>2dkv_A Chitinase; whole structure, oryza sativa L. japonica, hydrolase; HET: MES; 2.00A {Oryza sativa japonica group} PDB: 3iwr_A* Back     alignment and structure
Probab=100.00  E-value=3e-56  Score=409.17  Aligned_cols=165  Identities=31%  Similarity=0.689  Sum_probs=152.0

Q ss_pred             eEEeecCCcCCCCCCCCCCC------cccc-------CC--------------CCcccccCHHHHHHHHcCCCCCCccCC
Q 036277           66 IVKKVKGKKVCIKGWECPTW------SKFC-------CN--------------ETISDYFQVYQFENFFSKRNTPVAHAV  118 (246)
Q Consensus        66 ~~~~~ag~a~C~~g~cCs~~------~~YC-------c~--------------~~V~siiT~~~Fd~lfp~Rn~~~c~a~  118 (246)
                      .|+.|+|++.||.++|||+|      ++||       |.              .+|++|||+++||+||||||++.||++
T Consensus         3 ~cg~~~~~~~c~~~~Ccs~~G~Cg~t~~~Cg~gcq~~c~~~~~~~~~~~~~~~~~v~~iit~~~f~~~~~~rn~~~c~~~   82 (309)
T 2dkv_A            3 QCGAQAGGARCPNCLCCSRWGWCGTTSDFCGDGCQSQCSGCGPTPTPTPPSPSDGVGSIVPRDLFERLLLHRNDGACPAR   82 (309)
T ss_dssp             BCSTTTTTCCCGGGCEECTTSBEESSHHHHSTTCCBCSSCC------------CCGGGTSCHHHHHHHTTTTTCTTCTTT
T ss_pred             CcCCCCCCCcCCCCCcCcccccccCChHHhhccccccCCCCCCCCCCCCCCCCcchhhhccHHHHHHHhhcccccCCCcC
Confidence            47889999999999999997      5677       21              358899999999999999999999999


Q ss_pred             cccchHHHHHhhhccCCCCccccCCcchhhhHHHHHHhhhhccCCCCccccCCCCccccceeeeecCCCCCCcCCCCCCC
Q 036277          119 GFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYT  198 (246)
Q Consensus       119 GFYTY~aFI~AA~~Fp~~~FgttG~~~~~KRElAAFLAhvshET~gGw~~Ap~Gp~aWGlcy~eEi~~~~~YC~~s~~~~  198 (246)
                      +||||++||+|+++||  +|++||+++++||||||||||++|||+|||.++|++||+|||||+||+++...||+.+.  +
T Consensus        83 ~fyty~~fi~Aa~~fp--~F~~tG~~~~~krelAaFLAq~~HETggg~~~~~~~~y~wG~~~~~E~~~~~~Yc~~~~--~  158 (309)
T 2dkv_A           83 GFYTYEAFLAAAAAFP--AFGGTGNTETRKREVAAFLGQTSHETTGGWPTAPDGPFSWGYCFKQEQNPPSDYCQPSP--E  158 (309)
T ss_dssp             TCSCHHHHHHHHHTCT--TTTCSSSHHHHHHHHHHHHHHHHHHHCCCCTTCTTCGGGCTTCCSBCSSCSCCCCCCCS--S
T ss_pred             CcccHHHHHHHHHhhh--hhcccCCccccHHHHHHHHhhcchhcCCCcccCCCccccccceeeeeecCCCCCcCCCC--C
Confidence            9999999999999999  99999999999999999999999999999999999999999999999998889999874  7


Q ss_pred             CCCCCCCccccCCCCcccccchhHHHHHHHHhhhhhccc
Q 036277          199 YPCTPGAEYYGRGAIPIYWYACTFYIFIIVLLFKFQLLD  237 (246)
Q Consensus       199 yPCapGk~YyGRGpIQLSWNYNYg~fs~~v~~~k~~~~~  237 (246)
                      |||.+|++|||||||||||||||+++++++   +.+||+
T Consensus       159 ~pcgdG~~Y~GRG~IQLT~~~NY~~~g~~l---g~DLl~  194 (309)
T 2dkv_A          159 WPCAPGRKYYGRGPIQLSFNFNYGPAGRAI---GVDLLS  194 (309)
T ss_dssp             SCCCTTCCCCCBTTTTBCSHHHHHHHHHHH---TSCTTT
T ss_pred             cccCCCCeeecCCcccccchhhHHHHHHHh---CCcccc
Confidence            999999999999999999999999999765   345553
>3w3e_A Cotyledoneous yieldin-like protein; alpha helical protein, hydrolase, family 19 glycosidase, REG protein of the cell WALL yield threshold; 1.50A {Vigna unguiculata} PDB: 1dxj_A Back     alignment and structure
>3cql_A Endochitinase; glycosyl hydrolase, N-acetyl-D-glucosamine, carbo metabolism, chitin degradation, chitin-binding, glycosidase hydrolase; HET: NDG NAG; 1.50A {Carica papaya} PDB: 1cns_A 2baa_A Back     alignment and structure
>2z37_A Chitinase; family 19, conformational changes, hydrolase; 1.53A {Brassica juncea} PDB: 2z38_A 2z39_A Back     alignment and structure
>1dxj_A Class II chitinase; hydrolase, family 19 glycosidase, alpha helical protein; 1.8A {Canavalia ensiformis} SCOP: d.2.1.1 Back     alignment and structure
>3hbe_X Class IV chitinase CHIA4-PA2; endochitinase, family 19, conformational changes, chitin-binding, glycosidase, hydrolase; 1.55A {Picea abies} SCOP: d.2.1.0 PDB: 3hbd_A 3hbh_A Back     alignment and structure
>2cjl_A Chitinase G, secreted chitinase; hydrolase, plant enzymes; 1.5A {Streptomyces coelicolor} Back     alignment and structure
>1wvv_A Chitinase C; family 19 chitinase, whole structure, hydrolase; 2.00A {Streptomyces griseus} PDB: 1wvu_A 2dbt_A* 2d49_A Back     alignment and structure
>1wkx_A Hevein isoform 2; allergen, lectin, agglutinin-toxin motif; 1.70A {Hevea brasiliensis} PDB: 1hev_A 1q9b_A* Back     alignment and structure
>2kus_A SM-AMP-1.1A; plant antimicrobial peptide, chitin-binding peptide, antimic protein; NMR {Stellaria media} Back     alignment and structure
>2lb7_A WAMP-1A, antimicrobial peptide 1A; antimicrobial protein; NMR {Triticum kiharae} Back     alignment and structure
>1mmc_A AC-AMP2, antimicrobial peptide 2; antifungal antimicrobial, chitin-binding; NMR {Amaranthus caudatus} SCOP: g.3.1.2 PDB: 1zuv_A 1zwu_A* 1znt_A* Back     alignment and structure
>1p9g_A EAFP 2; antifungal peptide, atomic resolution, antifungal protein; HET: PCA; 0.84A {Eucommia ulmoides} SCOP: g.3.1.1 PDB: 1p9z_A* Back     alignment and structure
>1en2_A UDA, agglutinin isolectin I/agglutinin isolectin V/ AG isolectin VI; hevein domain, superantigen, saccharide binding binding protein; HET: NAG; 1.40A {Urtica dioica} SCOP: g.3.1.1 g.3.1.1 PDB: 1eis_A* 1enm_A* 1ehd_A 1ehh_A* 1iqb_A Back     alignment and structure
>1uha_A Lectin-D2; chitin-binding domain, sugar binding protein; 1.50A {Phytolacca americana} SCOP: g.3.1.1 g.3.1.1 PDB: 1ulm_A* 1uln_A Back     alignment and structure
>1ulk_A Lectin-C; chitin-binding protein, hevein domain, PL-C, sugar binding protein; 1.80A {Phytolacca americana} SCOP: g.3.1.1 g.3.1.1 g.3.1.1 Back     alignment and structure
>1uha_A Lectin-D2; chitin-binding domain, sugar binding protein; 1.50A {Phytolacca americana} SCOP: g.3.1.1 g.3.1.1 PDB: 1ulm_A* 1uln_A Back     alignment and structure
>1en2_A UDA, agglutinin isolectin I/agglutinin isolectin V/ AG isolectin VI; hevein domain, superantigen, saccharide binding binding protein; HET: NAG; 1.40A {Urtica dioica} SCOP: g.3.1.1 g.3.1.1 PDB: 1eis_A* 1enm_A* 1ehd_A 1ehh_A* 1iqb_A Back     alignment and structure
>1ulk_A Lectin-C; chitin-binding protein, hevein domain, PL-C, sugar binding protein; 1.80A {Phytolacca americana} SCOP: g.3.1.1 g.3.1.1 g.3.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 246
d2baaa_243 d.2.1.1 (A:) Plant class II chitinase {Barley (Hor 4e-35
d1dxja_242 d.2.1.1 (A:) Plant class II chitinase {Jack bean ( 2e-33
>d2baaa_ d.2.1.1 (A:) Plant class II chitinase {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 243 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Lysozyme-like
superfamily: Lysozyme-like
family: Family 19 glycosidase
domain: Plant class II chitinase
species: Barley (Hordeum vulgare) [TaxId: 4513]

 Score =  123 bits (310), Expect = 4e-35
 Identities = 45/126 (35%), Positives = 63/126 (50%), Gaps = 4/126 (3%)

Query: 93  TISDYFQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEIC 152
           ++S      QF+     RN     A GF+ Y +F+ A   +   GFGTTG+   + +E+ 
Sbjct: 1   SVSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFP--GFGTTGSADAQKREVA 58

Query: 153 AFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGA 212
           AFLA    +T+ G+  A  G  AWG C+  E   S  YC  S +  +PC PG  YYGRG 
Sbjct: 59  AFLAQTSHETTGGWATAPDGAFAWGYCFKQERGASSDYCTPSAQ--WPCAPGKRYYGRGP 116

Query: 213 IPIYWY 218
           I +   
Sbjct: 117 IQLSHN 122
>d1dxja_ d.2.1.1 (A:) Plant class II chitinase {Jack bean (Canavalia ensiformis) [TaxId: 3823]} Length = 242 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query246
d2baaa_243 Plant class II chitinase {Barley (Hordeum vulgare) 100.0
d1dxja_242 Plant class II chitinase {Jack bean (Canavalia ens 100.0
d1q9ba_43 Hevein {Hevea brasiliensis [TaxId: 3981]} 96.02
d9wgaa343 Wheat germ agglutinin (WGA) {Wheat (Triticum aesti 95.61
d1uhaa142 Lectin-D {American pokeweed (Phytolacca americana) 95.35
d1ulka241 Lectin-C {American pokeweed (Phytolacca americana) 95.07
d1en2a145 Isolectin VI {Stinging nettle (Urtica dioica), UDA 95.03
d9wgaa442 Wheat germ agglutinin (WGA) {Wheat (Triticum aesti 94.9
d9wgaa152 Wheat germ agglutinin (WGA) {Wheat (Triticum aesti 94.74
d1mmca_30 Antimicrobial peptide 2, AC-AMP2 {Tassel (Amaranth 94.45
d1uhaa240 Lectin-D {American pokeweed (Phytolacca americana) 94.38
d9wgaa234 Wheat germ agglutinin (WGA) {Wheat (Triticum aesti 94.35
d1en2a241 Isolectin VI {Stinging nettle (Urtica dioica), UDA 86.38
>d2baaa_ d.2.1.1 (A:) Plant class II chitinase {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Lysozyme-like
superfamily: Lysozyme-like
family: Family 19 glycosidase
domain: Plant class II chitinase
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=100.00  E-value=2.6e-51  Score=363.51  Aligned_cols=133  Identities=34%  Similarity=0.674  Sum_probs=128.4

Q ss_pred             CcccccCHHHHHHHHcCCCCCCccCCcccchHHHHHhhhccCCCCccccCCcchhhhHHHHHHhhhhccCCCCccccCCC
Q 036277           93 TISDYFQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGG  172 (246)
Q Consensus        93 ~V~siiT~~~Fd~lfp~Rn~~~c~a~GFYTY~aFI~AA~~Fp~~~FgttG~~~~~KRElAAFLAhvshET~gGw~~Ap~G  172 (246)
                      +|++|||+++||+|||||+++.||++|||||++||+|+++||  +|++||+++++||||||||||++|||+|+|..++++
T Consensus         1 ~v~~iit~~~F~~~fp~r~~~~c~~~~fYty~~fi~Aa~~fp--~F~~tg~~~~~krElAaFlAq~~hET~g~~~~~e~~   78 (243)
T d2baaa_           1 SVSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFP--GFGTTGSADAQKREVAAFLAQTSHETTGGWATAPDG   78 (243)
T ss_dssp             CGGGTSCHHHHHHHTTTTTSTTSTTTTTCCHHHHHHHHTTST--TTTCSSCHHHHHHHHHHHHHHHHHHTCCCCTTCTTC
T ss_pred             CHHHhcCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHHHhch--hhcCCCchhhhHHHHHHhhcCcccccCCCcccCCCC
Confidence            589999999999999999999999999999999999999999  999999999999999999999999999999999999


Q ss_pred             CccccceeeeecCCCCCCcCCCCCCCCCCCCCCccccCCCCcccccchhHHHHHHHH
Q 036277          173 PLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWYACTFYIFIIVL  229 (246)
Q Consensus       173 p~aWGlcy~eEi~~~~~YC~~s~~~~yPCapGk~YyGRGpIQLSWNYNYg~fs~~v~  229 (246)
                      +|+||||+++|.++...||+++.  +|||.+|++|||||||||||||||++|++.+.
T Consensus        79 ~~~~g~~~~~e~~~~~~yc~~~~--~~pc~~G~~Y~GRG~iQLT~~~NY~~~g~~~g  133 (243)
T d2baaa_          79 AFAWGYCFKQERGASSDYCTPSA--QWPCAPGKRYYGRGPIQLSHNYNYGPAGRAIG  133 (243)
T ss_dssp             GGGCTTCCSBCCSCCCCCCCCCS--SSCCCTTCCCCCBTTTTBCSHHHHHHHHHHHT
T ss_pred             chhhcccchhccCCccccccCCC--CCCCCCCCcccCCCcccccchhhHHHHHHHhC
Confidence            99999999999999999999764  79999999999999999999999999997654
>d1dxja_ d.2.1.1 (A:) Plant class II chitinase {Jack bean (Canavalia ensiformis) [TaxId: 3823]} Back     information, alignment and structure
>d1q9ba_ g.3.1.1 (A:) Hevein {Hevea brasiliensis [TaxId: 3981]} Back     information, alignment and structure
>d9wgaa3 g.3.1.1 (A:87-129) Wheat germ agglutinin (WGA) {Wheat (Triticum aestivum), also known as Triticum vulgare [TaxId: 4565]} Back     information, alignment and structure
>d1uhaa1 g.3.1.1 (A:1-42) Lectin-D {American pokeweed (Phytolacca americana) [TaxId: 3527]} Back     information, alignment and structure
>d1ulka2 g.3.1.1 (A:43-83) Lectin-C {American pokeweed (Phytolacca americana) [TaxId: 3527]} Back     information, alignment and structure
>d9wgaa4 g.3.1.1 (A:130-171) Wheat germ agglutinin (WGA) {Wheat (Triticum aestivum), also known as Triticum vulgare [TaxId: 4565]} Back     information, alignment and structure
>d9wgaa1 g.3.1.1 (A:1-52) Wheat germ agglutinin (WGA) {Wheat (Triticum aestivum), also known as Triticum vulgare [TaxId: 4565]} Back     information, alignment and structure
>d1mmca_ g.3.1.2 (A:) Antimicrobial peptide 2, AC-AMP2 {Tassel (Amaranthus caudatus) [TaxId: 3567]} Back     information, alignment and structure
>d1uhaa2 g.3.1.1 (A:43-82) Lectin-D {American pokeweed (Phytolacca americana) [TaxId: 3527]} Back     information, alignment and structure
>d9wgaa2 g.3.1.1 (A:53-86) Wheat germ agglutinin (WGA) {Wheat (Triticum aestivum), also known as Triticum vulgare [TaxId: 4565]} Back     information, alignment and structure
>d1en2a2 g.3.1.1 (A:46-86) Isolectin VI {Stinging nettle (Urtica dioica), UDA [TaxId: 3501]} Back     information, alignment and structure