Citrus Sinensis ID: 036284

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280--
MNDLFSNSFKKYTDLKTQAYQDDMEAGRERDNLDNFFEDVENVKAEMKTVEKLYKRLQEANEESKIVHNARTMKELRARMDADVQQVLKRVKIIKGKLEALERSNAASRNIPGCGPGSSSDRTRTSVVSGLGKKLKDLMDDFQNFRNKMQYEYKETVERRYFTVTGQKADEETIENLIASGESESFLQKAIQEQGRGQILDTISEIQERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEARELQKGSRKWTCYAIIA
ccccccccccccHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEcc
ccccccHHHHHHcccccHHHcccHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEccccccHHHHHHHHHcccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHcEEEEEEc
mndlfsnsfkkYTDLKTQAYQDDmeagrerdnldNFFEDVENVKAEMKTVEKLYKRLQEANEESKIVHNARTMKELRARMDADVQQVLKRVKIIKGKLEALERSnaasrnipgcgpgsssdrtrtSVVSGLGKKLKDLMDDFQNFRNKMQYEYKETVERRYFTVTGQKADEETIENLIASGESESFLQKAIQEQGRGQILDTISEIQERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEARELQKGSRKWTCYAIIA
MNDLFSNSFKKYTDLKTQAYQDDMEAGRERDNLDNFFEDVENVKAEMKTVEKLYKRlqeaneeskivhnaRTMKELRARMDADVQQVLKRVKIIKgklealersnaasrnipgcgpgsssdrtrtSVVSGLGKKLKDLMDDFQNFRNKMQYEYKETVERRYFTVTGQKADEETIENLIASGESESFLQKAIQEQGRGQILDTISEIQERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEarelqkgsrkwtcyaiia
MNDLFSNSFKKYTDLKTQAYQDDMEAGRERDNLDNFFEDVENVKAEMKTVEKLYKRLQEANEESKIVHNARTMKELRARMDADVQQVLKRVKIIKGKLEALERSNAASRNIPGCGPgsssdrtrtsvvsgLGKKLKDLMDDFQNFRNKMQYEYKETVERRYFTVTGQKADEETIENLIASGESESFLQKAIQEQGRGQILDTISEIQERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEARELQKGSRKWTCYAIIA
**********************************************************************************DVQQVLKRVKIIKGK***************************************DLMDDFQNFRNKMQYEYKETVERRYFTVTGQ******************************QILDTISEIQERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFV******************KWTCYAII*
MNDLFS***************************DNFFEDVENVKAEMKTVEKLYKRLQ*************************VQQVLKRVKIIKGKL***************************SVVSGLGKKLKDLMDDFQNF************************************************************IQERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEARELQKGSRKWTCYAIIA
MNDLFSNSFKKYTDLKTQAYQDDMEAGRERDNLDNFFEDVENVKAEMKTVEKLYKRLQEANEESKIVHNARTMKELRARMDADVQQVLKRVKIIKGKLEALERSNAASRNIP****************SGLGKKLKDLMDDFQNFRNKMQYEYKETVERRYFTVTGQKADEETIENLIASGESESFLQKAIQEQGRGQILDTISEIQERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGT**************KWTCYAIIA
*****SNSFKKYTDLKT***QDD*****ERDNLDNFFEDVENVKAEMKTVEKLYKRLQEANEESKIVHNARTMKELRARMDADVQQVLKRVKIIKGKLEALERSNAASR******PGSSSDRTRTSVVSGLGKKLKDLMDDFQNFRNKMQYEYKETVERRYFTVTGQKADEETIENLIASGESESFLQKAIQEQGRGQILDTISEIQERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEARELQKGSRKWTCYAIIA
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MNDLFSNSFKKYTDLKTQAYQDDMEAGRERDNxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxHNARTMKELRARMDADxxxxxxxxxxxxxxxxxxxxxNAASRNIPGCGPGSSSDRTRTSVVSGLGKKLKDLMDDFQNFRNKMQYEYKETVERRYFTVTGQKADEETIENLIASGESESFLQKAIQEQGRGQILDTISEIQERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEARELQKGSRKWTCYAIIA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query282 2.2.26 [Sep-21-2011]
O64791303 Syntaxin-124 OS=Arabidops yes no 0.996 0.927 0.793 1e-131
Q9SXB0298 Syntaxin-125 OS=Arabidops no no 0.971 0.919 0.792 1e-126
Q9ZQZ8305 Syntaxin-123 OS=Arabidops no no 0.989 0.914 0.702 1e-113
Q9ZSD4346 Syntaxin-121 OS=Arabidops no no 0.872 0.710 0.658 1e-93
Q9SVC2341 Syntaxin-122 OS=Arabidops no no 0.989 0.818 0.560 4e-85
Q9SRV7306 Putative syntaxin-131 OS= no no 0.971 0.895 0.478 7e-69
Q42374310 Syntaxin-related protein no no 0.964 0.877 0.470 3e-68
Q8VZU2304 Syntaxin-132 OS=Arabidops no no 0.975 0.904 0.485 5e-63
Q9ZPV9305 Syntaxin-112 OS=Arabidops no no 0.971 0.898 0.359 1e-48
A8WVD0293 Syntaxin-1A OS=Caenorhabd N/A no 0.854 0.822 0.297 3e-20
>sp|O64791|SY124_ARATH Syntaxin-124 OS=Arabidopsis thaliana GN=SYP124 PE=2 SV=1 Back     alignment and function desciption
 Score =  467 bits (1201), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 223/281 (79%), Positives = 252/281 (89%)

Query: 1   MNDLFSNSFKKYTDLKTQAYQDDMEAGRERDNLDNFFEDVENVKAEMKTVEKLYKRLQEA 60
           MNDLFS+SFKKYTDLK QA  DD+E+G+E  NLD FFEDVENVK  MK VE LYK LQ++
Sbjct: 1   MNDLFSSSFKKYTDLKQQAQMDDIESGKETMNLDKFFEDVENVKDNMKGVETLYKSLQDS 60

Query: 61  NEESKIVHNARTMKELRARMDADVQQVLKRVKIIKGKLEALERSNAASRNIPGCGPGSSS 120
           NEE K VHNA+ +KELRA+MD DV QVLKRVK+IK KLEALE++NA SRN+ GCGPGSS+
Sbjct: 61  NEECKTVHNAKKVKELRAKMDGDVAQVLKRVKMIKQKLEALEKANANSRNVSGCGPGSST 120

Query: 121 DRTRTSVVSGLGKKLKDLMDDFQNFRNKMQYEYKETVERRYFTVTGQKADEETIENLIAS 180
           DRTRTSVVSGLGKKLKDLMD FQ  R +M  EYKETVERRYFT+TG++ADE+TIENLI+S
Sbjct: 121 DRTRTSVVSGLGKKLKDLMDSFQGLRARMNAEYKETVERRYFTITGEQADEQTIENLISS 180

Query: 181 GESESFLQKAIQEQGRGQILDTISEIQERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQ 240
           GESE+FLQKAIQEQGRGQILDTISEIQERHDA+KEIEKNL+ELHQVFLDMAALVE+QG Q
Sbjct: 181 GESENFLQKAIQEQGRGQILDTISEIQERHDAVKEIEKNLIELHQVFLDMAALVESQGQQ 240

Query: 241 LNDIESHVAHANSFVRRGTEQLQEARELQKGSRKWTCYAII 281
           LNDIESHV+ A+SFVRRGT+QLQ+ARE QK SRKWTCYAI+
Sbjct: 241 LNDIESHVSKASSFVRRGTDQLQDAREYQKSSRKWTCYAIL 281
Vesicle trafficking protein that functions in the secretory pathway.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SXB0|SY125_ARATH Syntaxin-125 OS=Arabidopsis thaliana GN=SYP125 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZQZ8|SY123_ARATH Syntaxin-123 OS=Arabidopsis thaliana GN=SYP123 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZSD4|SY121_ARATH Syntaxin-121 OS=Arabidopsis thaliana GN=SYP121 PE=1 SV=1 Back     alignment and function description
>sp|Q9SVC2|SY122_ARATH Syntaxin-122 OS=Arabidopsis thaliana GN=SYP122 PE=1 SV=1 Back     alignment and function description
>sp|Q9SRV7|SY131_ARATH Putative syntaxin-131 OS=Arabidopsis thaliana GN=SYP131 PE=3 SV=1 Back     alignment and function description
>sp|Q42374|SY111_ARATH Syntaxin-related protein KNOLLE OS=Arabidopsis thaliana GN=KN PE=1 SV=1 Back     alignment and function description
>sp|Q8VZU2|SY132_ARATH Syntaxin-132 OS=Arabidopsis thaliana GN=SYP132 PE=1 SV=1 Back     alignment and function description
>sp|Q9ZPV9|SY112_ARATH Syntaxin-112 OS=Arabidopsis thaliana GN=SYP112 PE=2 SV=2 Back     alignment and function description
>sp|A8WVD0|STX1A_CAEBR Syntaxin-1A OS=Caenorhabditis briggsae GN=unc-64 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query282
302144240310 unnamed protein product [Vitis vinifera] 0.996 0.906 0.846 1e-140
359496726304 PREDICTED: syntaxin-124-like [Vitis vini 0.996 0.924 0.846 1e-139
449457795303 PREDICTED: syntaxin-124-like [Cucumis sa 0.989 0.920 0.856 1e-139
224116216302 predicted protein [Populus trichocarpa] 1.0 0.933 0.847 1e-139
224076808296 predicted protein [Populus trichocarpa] 1.0 0.952 0.843 1e-139
255560844302 syntaxin, putative [Ricinus communis] gi 0.992 0.927 0.846 1e-138
356555050304 PREDICTED: syntaxin-124-like [Glycine ma 0.996 0.924 0.832 1e-138
356527923318 PREDICTED: syntaxin-124-like [Glycine ma 0.989 0.877 0.835 1e-138
357475865305 Syntaxin-124 [Medicago truncatula] gi|35 0.989 0.914 0.839 1e-137
357446333304 Syntaxin-124 [Medicago truncatula] gi|35 0.996 0.924 0.829 1e-137
>gi|302144240|emb|CBI23478.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  502 bits (1292), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 238/281 (84%), Positives = 260/281 (92%)

Query: 1   MNDLFSNSFKKYTDLKTQAYQDDMEAGRERDNLDNFFEDVENVKAEMKTVEKLYKRLQEA 60
           MNDLFS+SFKKYTDLK Q Y DDME+G+E  NLD FFEDVENVK +M  VEKLYK+LQ+A
Sbjct: 1   MNDLFSSSFKKYTDLKQQTYMDDMESGKEAVNLDKFFEDVENVKQDMGGVEKLYKQLQDA 60

Query: 61  NEESKIVHNARTMKELRARMDADVQQVLKRVKIIKGKLEALERSNAASRNIPGCGPGSSS 120
           NEESK VHNA+TMK+LRARMD+DV QVLKRVK+IKGKLE LERSNAASRN+PGCGPGSS+
Sbjct: 61  NEESKTVHNAKTMKDLRARMDSDVTQVLKRVKMIKGKLEGLERSNAASRNVPGCGPGSSA 120

Query: 121 DRTRTSVVSGLGKKLKDLMDDFQNFRNKMQYEYKETVERRYFTVTGQKADEETIENLIAS 180
           DRTR+SVVSGLGKKLKD+MDDFQ  R KM  EYKETVERRY+T+TGQKADE+TIENLI+S
Sbjct: 121 DRTRSSVVSGLGKKLKDMMDDFQGLRAKMSTEYKETVERRYYTITGQKADEDTIENLISS 180

Query: 181 GESESFLQKAIQEQGRGQILDTISEIQERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQ 240
           GESESFLQKAIQEQGRGQI+DTISEIQERHDA+KEIEKNL+ELHQVFLDMAALVEAQG Q
Sbjct: 181 GESESFLQKAIQEQGRGQIMDTISEIQERHDAVKEIEKNLIELHQVFLDMAALVEAQGQQ 240

Query: 241 LNDIESHVAHANSFVRRGTEQLQEARELQKGSRKWTCYAII 281
           LNDIESHVAHA+SFVRRGTEQLQ ARE QKGSRKWTC AII
Sbjct: 241 LNDIESHVAHASSFVRRGTEQLQVAREYQKGSRKWTCIAII 281

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359496726|ref|XP_003635313.1| PREDICTED: syntaxin-124-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449457795|ref|XP_004146633.1| PREDICTED: syntaxin-124-like [Cucumis sativus] gi|449488500|ref|XP_004158058.1| PREDICTED: syntaxin-124-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224116216|ref|XP_002317241.1| predicted protein [Populus trichocarpa] gi|222860306|gb|EEE97853.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224076808|ref|XP_002305002.1| predicted protein [Populus trichocarpa] gi|222847966|gb|EEE85513.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255560844|ref|XP_002521435.1| syntaxin, putative [Ricinus communis] gi|223539334|gb|EEF40925.1| syntaxin, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356555050|ref|XP_003545852.1| PREDICTED: syntaxin-124-like [Glycine max] Back     alignment and taxonomy information
>gi|356527923|ref|XP_003532555.1| PREDICTED: syntaxin-124-like [Glycine max] Back     alignment and taxonomy information
>gi|357475865|ref|XP_003608218.1| Syntaxin-124 [Medicago truncatula] gi|355509273|gb|AES90415.1| Syntaxin-124 [Medicago truncatula] Back     alignment and taxonomy information
>gi|357446333|ref|XP_003593444.1| Syntaxin-124 [Medicago truncatula] gi|355482492|gb|AES63695.1| Syntaxin-124 [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query282
TAIR|locus:2197749303 SYP124 "syntaxin of plants 124 0.996 0.927 0.747 3.4e-109
TAIR|locus:2202049298 SYP125 "syntaxin of plants 125 0.978 0.926 0.750 1.5e-106
TAIR|locus:2125487305 SYP123 "syntaxin of plants 123 0.996 0.921 0.654 5.3e-95
TAIR|locus:2081476346 SYP121 "syntaxin of plants 121 0.996 0.812 0.565 1.4e-80
TAIR|locus:2079894341 SYP122 "syntaxin of plants 122 0.996 0.824 0.518 2.3e-71
TAIR|locus:2079449306 SYP131 "syntaxin of plants 131 0.985 0.908 0.458 3e-62
TAIR|locus:2025620310 SYP111 "syntaxin of plants 111 0.978 0.890 0.457 4.3e-61
TAIR|locus:2062151305 SYP112 "syntaxin of plants 112 0.971 0.898 0.335 2.2e-41
DICTYBASE|DDB_G0270556334 syn1B "putative syntaxin 1" [D 0.833 0.703 0.306 5.9e-25
UNIPROTKB|A8WVD0293 unc-64 "Syntaxin-1A" [Caenorha 0.854 0.822 0.282 3.3e-24
TAIR|locus:2197749 SYP124 "syntaxin of plants 124" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1079 (384.9 bits), Expect = 3.4e-109, P = 3.4e-109
 Identities = 210/281 (74%), Positives = 238/281 (84%)

Query:     1 MNDLFSNSFKKYTDLKTQAYQDDMEAGRERDNLDNFFEDVENVKAEMKTVEKLYKRLQEA 60
             MNDLFS+SFKKYTDLK QA  DD+E+G+E  NLD FFEDVENVK  MK VE LYK LQ++
Sbjct:     1 MNDLFSSSFKKYTDLKQQAQMDDIESGKETMNLDKFFEDVENVKDNMKGVETLYKSLQDS 60

Query:    61 NEESKIVHNARTMKELRARMDADVQQVLKRVKIIKGKLEALERSNAASRNIPGCGPXXXX 120
             NEE K VHNA+ +KELRA+MD DV QVLKRVK+IK KLEALE++NA SRN+ GCGP    
Sbjct:    61 NEECKTVHNAKKVKELRAKMDGDVAQVLKRVKMIKQKLEALEKANANSRNVSGCGPGSST 120

Query:   121 XXXXXXXXXXLGKKLKDLMDDFQNFRNKMQYEYKETVERRYFTVTGQKADEETIENLIAS 180
                       LGKKLKDLMD FQ  R +M  EYKETVERRYFT+TG++ADE+TIENLI+S
Sbjct:   121 DRTRTSVVSGLGKKLKDLMDSFQGLRARMNAEYKETVERRYFTITGEQADEQTIENLISS 180

Query:   181 GESESFLQKAIQEQGRGQILDTISEIQERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQ 240
             GESE+FLQKAIQEQGRGQILDTISEIQERHDA+KEIEKNL+ELHQVFLDMAALVE+QG Q
Sbjct:   181 GESENFLQKAIQEQGRGQILDTISEIQERHDAVKEIEKNLIELHQVFLDMAALVESQGQQ 240

Query:   241 LNDIESHVAHANSFVRRGTEQLQEARELQKGSRKWTCYAII 281
             LNDIESHV+ A+SFVRRGT+QLQ+ARE QK SRKWTCYAI+
Sbjct:   241 LNDIESHVSKASSFVRRGTDQLQDAREYQKSSRKWTCYAIL 281
GO:0005484 "SNAP receptor activity" evidence=IEA;TAS
GO:0005886 "plasma membrane" evidence=ISM;IDA
GO:0006886 "intracellular protein transport" evidence=IEA;TAS
GO:0016020 "membrane" evidence=IEA
GO:0016192 "vesicle-mediated transport" evidence=IEA
GO:0006944 "cellular membrane fusion" evidence=RCA;TAS
GO:0009860 "pollen tube growth" evidence=IDA
GO:0030133 "transport vesicle" evidence=IDA
TAIR|locus:2202049 SYP125 "syntaxin of plants 125" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125487 SYP123 "syntaxin of plants 123" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081476 SYP121 "syntaxin of plants 121" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2079894 SYP122 "syntaxin of plants 122" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2079449 SYP131 "syntaxin of plants 131" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025620 SYP111 "syntaxin of plants 111" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2062151 SYP112 "syntaxin of plants 112" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0270556 syn1B "putative syntaxin 1" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|A8WVD0 unc-64 "Syntaxin-1A" [Caenorhabditis briggsae (taxid:6238)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SXB0SY125_ARATHNo assigned EC number0.79210.97160.9194nono
Q9ZQZ8SY123_ARATHNo assigned EC number0.70210.98930.9147nono
O64791SY124_ARATHNo assigned EC number0.79350.99640.9273yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.XI.2100.1
hypothetical protein (296 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query282
cd00179151 cd00179, SynN, Syntaxin N-terminus domain; syntaxi 5e-37
smart00503117 smart00503, SynN, Syntaxin N-terminal domain 4e-20
pfam0573962 pfam05739, SNARE, SNARE domain 3e-13
pfam00804103 pfam00804, Syntaxin, Syntaxin 3e-13
cd0019360 cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-se 3e-11
smart0039766 smart00397, t_SNARE, Helical region found in SNARE 1e-10
COG5074280 COG5074, COG5074, t-SNARE complex subunit, syntaxi 4e-09
COG5325283 COG5325, COG5325, t-SNARE complex subunit, syntaxi 1e-06
>gnl|CDD|238105 cd00179, SynN, Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain Back     alignment and domain information 
 Score =  128 bits (323), Expect = 5e-37
 Identities = 52/158 (32%), Positives = 85/158 (53%), Gaps = 7/158 (4%)

Query: 33  LDNFFEDVENVKAEMKTVEKLYKRLQEANEESKIVHNARTMKELRARMDADVQQVLKRVK 92
           L+ FFE+VE ++  +  + +  + LQ+ + +     +A    EL+  +++ VQ++ K  K
Sbjct: 1   LEEFFEEVEEIRGNIDKISEDVEELQKLHSQLLTAPDA--DPELKQELESLVQEIKKLAK 58

Query: 93  IIKGKLEALERSNAASRNIPGCGPGSSSDRTRTSVVSGLGKKLKDLMDDFQNFRNKMQYE 152
            IKGKL+ LE SN  +  + G    SS DR R +  SGL KK  ++M +F   + K +  
Sbjct: 59  EIKGKLKELEESNEQNEALNG----SSVDRIRKTQHSGLSKKFVEVMTEFNKAQRKYRER 114

Query: 153 YKETVERRYFTVTGQKADEETIENLIASGESESFLQKA 190
           YKE ++R+     G+  DEE  + L  SG SE F  + 
Sbjct: 115 YKERIQRQLEITGGEATDEELEDMLE-SGNSEIFTSQI 151

Length = 151
>gnl|CDD|214699 smart00503, SynN, Syntaxin N-terminal domain Back     alignment and domain information
>gnl|CDD|203323 pfam05739, SNARE, SNARE domain Back     alignment and domain information
>gnl|CDD|201451 pfam00804, Syntaxin, Syntaxin Back     alignment and domain information
>gnl|CDD|238115 cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent Back     alignment and domain information
>gnl|CDD|197699 smart00397, t_SNARE, Helical region found in SNAREs Back     alignment and domain information
>gnl|CDD|227406 COG5074, COG5074, t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|227635 COG5325, COG5325, t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 282
KOG0810297 consensus SNARE protein Syntaxin 1 and related pro 100.0
COG5074280 t-SNARE complex subunit, syntaxin [Intracellular t 100.0
KOG0809305 consensus SNARE protein TLG2/Syntaxin 16 [Intracel 100.0
KOG0811269 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt 99.97
cd00179151 SynN Syntaxin N-terminus domain; syntaxins are ner 99.9
COG5325283 t-SNARE complex subunit, syntaxin [Intracellular t 99.9
KOG0812311 consensus SNARE protein SED5/Syntaxin 5 [Intracell 99.74
smart00503117 SynN Syntaxin N-terminal domain. Three-helix domai 99.67
PF0573963 SNARE: SNARE domain; InterPro: IPR000727 The proce 99.56
PF00804103 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins 99.53
cd0019360 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fu 99.43
smart0039766 t_SNARE Helical region found in SNAREs. All alpha- 99.31
PF14523102 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A. 98.79
KOG3202235 consensus SNARE protein TLG1/Syntaxin 6 [Intracell 98.07
KOG3894316 consensus SNARE protein Syntaxin 18/UFE1 [Intracel 97.8
PF00435105 Spectrin: Spectrin repeat; InterPro: IPR002017 Spe 93.04
PF0095789 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 89.15
KOG3065273 consensus SNAP-25 (synaptosome-associated protein) 87.08
KOG3385118 consensus V-SNARE [Intracellular trafficking, secr 86.86
smart00150101 SPEC Spectrin repeats. 82.45
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=5.1e-54  Score=385.75  Aligned_cols=273  Identities=41%  Similarity=0.651  Sum_probs=242.3

Q ss_pred             CCcccchhhhhhhhhhhhcccccc--ccCc--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHH
Q 036284            1 MNDLFSNSFKKYTDLKTQAYQDDM--EAGR--ERDNLDNFFEDVENVKAEMKTVEKLYKRLQEANEESKIVHNARTMKEL   76 (282)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~l~~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l   76 (282)
                      |||+++.+|..+...-++..  +.  ..|+  .+.+|+.||..|++|+..|..+...+.+|..+|..  .++++...+++
T Consensus         1 M~d~~~~~~~~~~~~~~e~~--~~~~~~~~~~~~~~l~~Ff~~ve~Ir~~i~~l~~~~~~l~~~hs~--~l~~~~~~~~~   76 (297)
T KOG0810|consen    1 MNDRLSELLARSVSEDNELD--DVEGHTGSADGDSNLEEFFEDVEEIRDDIEKLDEDVEKLQKLHSK--SLHSPNADKEL   76 (297)
T ss_pred             CccccHHHHcCchhhccccc--ccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--HhccccccHHH
Confidence            99999999999975444443  32  1111  24679999999999999999999999999999954  46667778899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036284           77 RARMDADVQQVLKRVKIIKGKLEALERSNAASRNIPGCGPGSSSDRTRTSVVSGLGKKLKDLMDDFQNFRNKMQYEYKET  156 (282)
Q Consensus        77 ~~~l~~l~~~i~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~s~~~rir~~q~~~L~~~f~~~~~~f~~~Q~~~~~~~r~~  156 (282)
                      +++|+.++.++.+.++.|+.+|+.+++.+......+   +.++..|++++|+..++++|.++|..|+.+|..|+.+|+++
T Consensus        77 k~~l~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~~~~---~~~~~~r~rrtq~~~~~kkf~~~M~~f~~~~~~~r~~~k~~  153 (297)
T KOG0810|consen   77 KRKLESLVDEIRRRARKIKTKLKALEKENEADETQN---RSSAGLRTRRTQTSALSKKLKELMNEFNRTQSKYREEYKER  153 (297)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC---CCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999987654222   34556799999999999999999999999999999999999


Q ss_pred             HhhhhhhccCCCCCHHHHHHHHhcCCchHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036284          157 VERRYFTVTGQKADEETIENLIASGESESFLQKAIQEQGRGQILDTISEIQERHDAIKEIEKNLLELHQVFLDMAALVEA  236 (282)
Q Consensus       157 ~~r~~~~i~~~~~sdeeie~~~e~~~~~~~~q~~l~~~~~~~~~~~l~~i~~R~~eI~~le~si~eL~~lF~dla~LV~~  236 (282)
                      ++|+|.++.|..++|++++.++++|+++.|++.++.  ++++++.+|.++++||.+|.+||++|.|||+||.|||+||+.
T Consensus       154 i~Rql~i~~~~~~~de~ie~~ie~g~~~~f~~~~i~--~~~~~~~~l~Eiq~Rh~~ik~LEksi~ELhqlFlDMa~LVe~  231 (297)
T KOG0810|consen  154 IQRQLFIVGGEETTDEEIEEMIESGGSEVFTQKAIQ--DRGQAKQTLAEIQERHDEIKKLEKSIRELHQLFLDMAVLVES  231 (297)
T ss_pred             HHHHHhhhCCCcCChHHHHHHHHCCChHHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            998877665548999999999999999999999997  446678999999999999999999999999999999999999


Q ss_pred             hchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccceeeeeeC
Q 036284          237 QGHQLNDIESHVAHANSFVRRGTEQLQEARELQKGSRKWTCYAIIA  282 (282)
Q Consensus       237 Qge~id~Ie~nv~~a~~~v~~g~~eL~kA~k~qk~~Rk~~c~~i~i  282 (282)
                      ||||||+||+||.+|.+||++|..+|++|.+||+++|||.||+||+
T Consensus       232 QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaRK~k~i~ii~  277 (297)
T KOG0810|consen  232 QGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKARKWKIIIIII  277 (297)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhceeeeehH
Confidence            9999999999999999999999999999999999999998887763

>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain Back     alignment and domain information
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>smart00503 SynN Syntaxin N-terminal domain Back     alignment and domain information
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ] Back     alignment and domain information
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane Back     alignment and domain information
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent Back     alignment and domain information
>smart00397 t_SNARE Helical region found in SNAREs Back     alignment and domain information
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A Back     alignment and domain information
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure Back     alignment and domain information
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis Back     alignment and domain information
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>smart00150 SPEC Spectrin repeats Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query282
3c98_B279 Revised Structure Of The Munc18a-Syntaxin1 Complex 9e-15
2xhe_B279 Crystal Structure Of The Unc18-Syntaxin 1 Complex F 5e-14
1jth_B77 Crystal Structure And Biophysical Properties Of A C 1e-09
1sfc_B83 Neuronal Synaptic Fusion Complex Length = 83 1e-09
3hd7_B109 Helical Extension Of The Neuronal Snare Complex Int 1e-09
1hvv_A75 Self-Association Of The H3 Region Of Syntaxin 1a: I 2e-09
1urq_B75 Crystal Structure Of Neuronal Q-Snares In Complex W 2e-08
1n7s_B68 High Resolution Structure Of A Truncated Neuronal S 2e-08
3rk2_B65 Truncated Snare Complex Length = 65 4e-08
1kil_B62 Three-Dimensional Structure Of The ComplexinSNARE C 5e-08
2nps_B71 Crystal Structure Of The Early Endosomal Snare Comp 6e-07
1l4a_B88 X-Ray Structure Of The Neuronal ComplexinSNARE COMP 1e-06
1fio_A196 Crystal Structure Of Yeast T-Snare Protein Sso1 Len 8e-05
>pdb|3C98|B Chain B, Revised Structure Of The Munc18a-Syntaxin1 Complex Length = 279 Back     alignment and structure 
Iteration: 1

 Score = 77.0 bits (188), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 121/246 (49%), Gaps = 16/246 (6%)
Query: 33  LDNFFEDVENVKAEMKTVEKLYKRLQEAN-EESKIVHNARTMKELRARMDADVQQVLKRV 91
           +D FFE VE ++     ++K+ + ++E   + S I+ +    ++ +  ++  +  + K  
Sbjct: 42  MDEFFEQVEEIRG---FIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTA 98
Query: 92  KIIKGKLEALERSNAASRNIPGCGPXXXXXXXXXXXXXXLGKKLKDLMDDFQNFRNKMQY 151
             ++ KL+++E+S        G                 L +K  ++M ++    N  Q 
Sbjct: 99  NKVRSKLKSIEQSIEQE---EGLNRSSADLRIRKTQHSTLSRKFVEVMSEY----NATQS 151
Query: 152 EYKETVE---RRYFTVTGQKADEETIENLIASGESESFLQKAIQEQGRGQILDTISEIQE 208
           +Y+E  +   +R   +TG+    E +E+++ SG    F    I +    +    +SEI+ 
Sbjct: 152 DYRERCKGRIQRQLEITGRTTTSEELEDMLESGNPAIFASGIIMDSSISK--QALSEIET 209
Query: 209 RHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEAREL 268
           RH  I ++E ++ ELH +F+DMA LVE+QG  ++ IE +V HA  +V R     ++A + 
Sbjct: 210 RHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKY 269
Query: 269 QKGSRK 274
           Q  +R+
Sbjct: 270 QSKARR 275
>pdb|2XHE|B Chain B, Crystal Structure Of The Unc18-Syntaxin 1 Complex From Monosiga Brevicollis Length = 279 Back     alignment and structure
>pdb|1JTH|B Chain B, Crystal Structure And Biophysical Properties Of A Complex Between The N-Terminal Region Of Snap25 And The Snare Region Of Syntaxin 1a Length = 77 Back     alignment and structure
>pdb|1SFC|B Chain B, Neuronal Synaptic Fusion Complex Length = 83 Back     alignment and structure
>pdb|3HD7|B Chain B, Helical Extension Of The Neuronal Snare Complex Into The Membrane, Spacegroup C 1 2 1 Length = 109 Back     alignment and structure
>pdb|1HVV|A Chain A, Self-Association Of The H3 Region Of Syntaxin 1a: Implications For Snare Complex Assembly Length = 75 Back     alignment and structure
>pdb|1URQ|B Chain B, Crystal Structure Of Neuronal Q-Snares In Complex With R-Snare Motif Of Tomosyn Length = 75 Back     alignment and structure
>pdb|1N7S|B Chain B, High Resolution Structure Of A Truncated Neuronal Snare Complex Length = 68 Back     alignment and structure
>pdb|3RK2|B Chain B, Truncated Snare Complex Length = 65 Back     alignment and structure
>pdb|1KIL|B Chain B, Three-Dimensional Structure Of The ComplexinSNARE COMPLEX Length = 62 Back     alignment and structure
>pdb|2NPS|B Chain B, Crystal Structure Of The Early Endosomal Snare Complex Length = 71 Back     alignment and structure
>pdb|1L4A|B Chain B, X-Ray Structure Of The Neuronal ComplexinSNARE COMPLEX From The Squid Loligo Pealei Length = 88 Back     alignment and structure
>pdb|1FIO|A Chain A, Crystal Structure Of Yeast T-Snare Protein Sso1 Length = 196 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query282
1dn1_B267 Syntaxin 1A, syntaxin binding protein 1; protein-p 4e-44
1fio_A196 SSO1 protein; four helix bundle, alpha helix, memb 3e-41
2xhe_B279 Syntaxin1; exocytosis, exocytosis complex, snare, 4e-41
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 5e-25
1jth_B77 Syntaxin 1A; coiled-coil, polar layer, endocytosis 4e-24
1s94_A180 S-syntaxin; three helix bundle, structural plastic 2e-22
2nps_B71 Syntaxin 13, vesicle-associated membrane protein 4 1e-21
1sfc_B83 Protein (syntaxin 1A), protein (synaptobrevin 2); 1e-20
3b5n_B69 Protein SSO1; snare complex, syntaxin, synaptobrev 2e-20
1n7s_B68 Syntaxin 1A; neuronal snare protein complex, four 3e-20
1gl2_B65 Syntaxin 7; membrane protein, membrane fusion prot 9e-19
1ez3_A127 Syntaxin-1A; three helix bundle, endocytosis/exocy 6e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 3c98_B Length = 267 Back     alignment and structure
 Score =  149 bits (378), Expect = 4e-44
 Identities = 64/268 (23%), Positives = 131/268 (48%), Gaps = 12/268 (4%)

Query: 14  DLKTQAYQDDMEAGRER----DNLDNFFEDVENVKAEMKTVEKLYKRLQEANEESKIVHN 69
           +L+T    DD +           +D FFE VE ++  +  + +  + ++  +  S I+ +
Sbjct: 7   ELRTAKDSDDDDDVTVTVDRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKH--SAILAS 64

Query: 70  ARTMKELRARMDADVQQVLKRVKIIKGKLEALERSNAASRNIPGCGPGSSSDRTRTSVVS 129
               ++ +  ++  +  + K    ++ KL+++E+S        G    S+  R R +  S
Sbjct: 65  PNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSI---EQEEGLNRSSADLRIRKTQHS 121

Query: 130 GLGKKLKDLMDDFQNFRNKMQYEYKETVERRYFTVTGQKADEETIENLIASGESESFLQK 189
            L +K  ++M ++   ++  +   K  ++R+   +TG+    E +E+++ SG    F   
Sbjct: 122 TLSRKFVEVMSEYNATQSDYRERCKGRIQRQL-EITGRTTTSEELEDMLESGNPAIFASG 180

Query: 190 AIQEQGRGQILDTISEIQERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVA 249
            I +    +    +SEI+ RH  I ++E ++ ELH +F+DMA LVE+QG  ++ IE +V 
Sbjct: 181 IIMDSSISK--QALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVE 238

Query: 250 HANSFVRRGTEQLQEARELQKGSRKWTC 277
           HA  +V R     ++A + Q  +R+   
Sbjct: 239 HAVDYVERAVSDTKKAVKYQSKARRKKI 266
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1 Length = 196 Back     alignment and structure
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Length = 279 Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Length = 109 Back     alignment and structure
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B Length = 77 Back     alignment and structure
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1 Length = 180 Back     alignment and structure
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Length = 71 Back     alignment and structure
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B Length = 83 Back     alignment and structure
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Length = 69 Back     alignment and structure
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B Length = 68 Back     alignment and structure
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Length = 65 Back     alignment and structure
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A* Length = 127 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query282
1dn1_B267 Syntaxin 1A, syntaxin binding protein 1; protein-p 100.0
2xhe_B279 Syntaxin1; exocytosis, exocytosis complex, snare, 100.0
1fio_A196 SSO1 protein; four helix bundle, alpha helix, memb 100.0
1jth_B77 Syntaxin 1A; coiled-coil, polar layer, endocytosis 99.94
3c98_B279 Syntaxin-1A; protein complex, alternative splicing 99.94
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 99.94
2nps_B71 Syntaxin 13, vesicle-associated membrane protein 4 99.92
1sfc_B83 Protein (syntaxin 1A), protein (synaptobrevin 2); 99.91
3b5n_B69 Protein SSO1; snare complex, syntaxin, synaptobrev 99.9
1s94_A180 S-syntaxin; three helix bundle, structural plastic 99.88
1n7s_B68 Syntaxin 1A; neuronal snare protein complex, four 99.87
1gl2_B65 Syntaxin 7; membrane protein, membrane fusion prot 99.85
1ez3_A127 Syntaxin-1A; three helix bundle, endocytosis/exocy 99.8
2dnx_A130 Syntaxin-12; snare, HABC domain, UP and DOWN three 99.21
1hs7_A97 Syntaxin VAM3; UP-and-DOWN three-helix bundle inse 97.79
2nps_D82 Syntaxin-6; vesicle fusion, snare complex, early e 96.08
1n7s_D66 SNAP-25A; neuronal snare protein complex, four hel 95.98
1gl2_D65 Syntaxin 8, vesicle transport V-snare protein VTI1 95.53
1sfc_D87 Protein (SNAP-25B), protein (synaptobrevin 2); mem 95.53
1nhl_A54 Synaptosomal-associated protein 23; snare, coiled- 95.2
1l4a_D87 S-SNAP25 fusion protein; snare, snare complex, mem 94.24
3b5n_C70 Protein transport protein SEC9; snare complex, syn 93.9
3b5n_D64 Protein transport protein SEC9; snare complex, syn 93.82
1n7s_C79 SNAP-25A; neuronal snare protein complex, four hel 93.29
1l4a_C83 S-SNAP25 fusion protein; snare, snare complex, mem 90.27
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 89.3
3uul_A118 Utrophin; spectrin repeat, structural protein, cyt 82.66
3uun_A119 Dystrophin; triple helical, cell structure and sta 82.0
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B Back     alignment and structure
Probab=100.00  E-value=8.1e-48  Score=344.29  Aligned_cols=241  Identities=24%  Similarity=0.431  Sum_probs=196.0

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhc
Q 036284           30 RDNLDNFFEDVENVKAEMKTVEKLYKRLQEANEESKIVHNARTMKELRARMDADVQQVLKRVKIIKGKLEALERSNAASR  109 (282)
Q Consensus        30 ~~~l~~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~l~~l~~~i~~~~~~i~~~l~~l~~~~~~~~  109 (282)
                      +.+|+.||+.|++|+..|..|..++.+|+.+|.+++..+++  ...++.+|+.++.+|+++++.|+.+|+.|+..+... 
T Consensus        27 ~~~m~~F~~~v~~I~~~I~~I~~~v~~l~~l~~~~l~~~~~--~~~~~~~l~~l~~~i~~~~~~i~~~Lk~l~~~~~~~-  103 (267)
T 1dn1_B           27 DRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNP--DEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQE-  103 (267)
T ss_dssp             CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSC--CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-
Confidence            56899999999999999999999999999999887654443  347899999999999999999999999998875431 


Q ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHhcCCchHHHHH
Q 036284          110 NIPGCGPGSSSDRTRTSVVSGLGKKLKDLMDDFQNFRNKMQYEYKETVERRYFTVTGQKADEETIENLIASGESESFLQK  189 (282)
Q Consensus       110 ~~~~~~~~s~~~rir~~q~~~L~~~f~~~~~~f~~~Q~~~~~~~r~~~~r~~~~i~~~~~sdeeie~~~e~~~~~~~~q~  189 (282)
                        +++.+++++.|+|++|+.+|+++|+++|..|+.+|..|+.+++.++.|+| .|.||++|+++++.++++|++..|.+.
T Consensus       104 --~~~~~~~~e~Rirk~q~~~L~~~f~~~m~~yq~~Q~~y~e~~k~~i~Rq~-~i~~~~~tdeeie~~ie~g~~~~f~q~  180 (267)
T 1dn1_B          104 --EGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQL-EITGRTTTSEELEDMLESGNPAIFASG  180 (267)
T ss_dssp             --HHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTCCCCHHHHHHHHHTCSSCTTTTT
T ss_pred             --cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hccCCCCCHHHHHHHHhCCcHHHHHHH
Confidence              12234456789999999999999999999999999999999999998754 567999999999999999988877765


Q ss_pred             HHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhc
Q 036284          190 AIQEQGRGQILDTISEIQERHDAIKEIEKNLLELHQVFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEARELQ  269 (282)
Q Consensus       190 ~l~~~~~~~~~~~l~~i~~R~~eI~~le~si~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~g~~eL~kA~k~q  269 (282)
                      ++++.  ..++.+|.+|++||++|.+||++|.||++||.|||.||++||++||+||+||+.|..||+.|..+|.+|.+||
T Consensus       181 ~l~~~--~~~~~~l~~i~~R~~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~~~v~~~~~~l~kA~~~q  258 (267)
T 1dn1_B          181 IIMDS--SISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQ  258 (267)
T ss_dssp             CCCCS--HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC----------
T ss_pred             HHHhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44432  3467899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccceee
Q 036284          270 KGSRKWTCY  278 (282)
Q Consensus       270 k~~Rk~~c~  278 (282)
                      +++|||.||
T Consensus       259 ~~~rkk~~~  267 (267)
T 1dn1_B          259 SKARRKKIM  267 (267)
T ss_dssp             ---------
T ss_pred             HHhcCcccC
Confidence            999999986
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Back     alignment and structure
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1 Back     alignment and structure
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B Back     alignment and structure
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus} Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Back     alignment and structure
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Back     alignment and structure
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B Back     alignment and structure
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Back     alignment and structure
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1 Back     alignment and structure
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B Back     alignment and structure
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Back     alignment and structure
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A* Back     alignment and structure
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1 Back     alignment and structure
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens} Back     alignment and structure
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B Back     alignment and structure
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1 Back     alignment and structure
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 Back     alignment and structure
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1 Back     alignment and structure
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Back     alignment and structure
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Back     alignment and structure
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A Back     alignment and structure
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Back     alignment and structure
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A Back     alignment and structure
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 282
d1fioa_196 a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces c 7e-28
d1ez3a_124 a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat ( 5e-20
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 196 Back     information, alignment and structure

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Sso1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  104 bits (260), Expect = 7e-28
 Identities = 38/206 (18%), Positives = 83/206 (40%), Gaps = 13/206 (6%)

Query: 32  NLDNFFEDVENVKAEMKTVEKLYKRLQEANEESKIVHNARTMKELRARMDADVQQVLKRV 91
           +   F   +  +  ++   +    ++   ++      N      LR  +D  V Q     
Sbjct: 3   DFVGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQ 62

Query: 92  KIIKGKLEALERSNAASRNIPGCGPGSSSDRTRTSVVSGLGKKLKDLMDDFQNFRNKMQY 151
             +K ++++ +R                 D  + +      ++   L+ D++   +  + 
Sbjct: 63  FKLKNEIKSAQRD-------------GIHDTNKQAQAENSRQRFLKLIQDYRIVDSNYKE 109

Query: 152 EYKETVERRYFTVTGQKADEETIENLIASGESESFLQKAIQEQGRGQILDTISEIQERHD 211
           E KE  +R+Y  +  +  ++E    +   G  + F Q  +    RG+    ++E+Q RH 
Sbjct: 110 ENKEQAKRQYMIIQPEATEDEVEAAISDVGGQQIFSQALLNANRRGEAKTALAEVQARHQ 169

Query: 212 AIKEIEKNLLELHQVFLDMAALVEAQ 237
            + ++EK++ EL Q+F DM  LV  Q
Sbjct: 170 ELLKLEKSMAELTQLFNDMEELVIEQ 195
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query282
d1fioa_196 Sso1 {Baker's yeast (Saccharomyces cerevisiae) [Ta 99.95
d1ez3a_124 Syntaxin 1A N-terminal domain {Rat (Rattus norvegi 99.8
d1hs7a_97 Vam3p N-terminal domain {Baker's yeast (Saccharomy 95.19
d1quua1124 alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} 87.16
d1u5pa1110 Spectrin alpha chain {Chicken (Gallus gallus) [Tax 82.5
d1hcia4114 alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} 80.83
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Sso1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=7.3e-27  Score=195.76  Aligned_cols=193  Identities=21%  Similarity=0.364  Sum_probs=162.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCC
Q 036284           32 NLDNFFEDVENVKAEMKTVEKLYKRLQEANEESKIVHNARTMKELRARMDADVQQVLKRVKIIKGKLEALERSNAASRNI  111 (282)
Q Consensus        32 ~l~~f~~~v~~I~~~i~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~l~~l~~~i~~~~~~i~~~l~~l~~~~~~~~~~  111 (282)
                      .+..||+.|++|+..|..|+..+..|..++.+.+..+++.+...++.+++.++.+++.+++.|+..++.+...       
T Consensus         3 d~~~f~~~v~~I~~~i~~i~~~i~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~k~~~~~~~~~-------   75 (196)
T d1fioa_           3 DFVGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRD-------   75 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-------
Confidence            3788999999999999999999999999999887778888889999999999999999999999999888653       


Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHhcCCc-hHHHHHH
Q 036284          112 PGCGPGSSSDRTRTSVVSGLGKKLKDLMDDFQNFRNKMQYEYKETVERRYFTVTGQKADEETIENLIASGES-ESFLQKA  190 (282)
Q Consensus       112 ~~~~~~s~~~rir~~q~~~L~~~f~~~~~~f~~~Q~~~~~~~r~~~~r~~~~i~~~~~sdeeie~~~e~~~~-~~~~q~~  190 (282)
                            .+..|++++++..|..+|.+++..|+.+|..|...++.++.|++. +.+|.+++++++..+..++. ..+.+..
T Consensus        76 ------~~~~~~~~~~~~~l~~~l~~~~~~f~~~q~~~~~~~k~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (196)
T d1fioa_          76 ------GIHDTNKQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQYM-IIQPEATEDEVEAAISDVGGQQIFSQAL  148 (196)
T ss_dssp             ------TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCTTCCHHHHHHHTSHHHHHHHHHHHT
T ss_pred             ------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-ccCCCccchhhhHhhccccchHHHHHHH
Confidence                  123588999999999999999999999999999999999987655 45778899999887765433 3344433


Q ss_pred             HHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 036284          191 IQEQGRGQILDTISEIQERHDAIKEIEKNLLELHQVFLDMAALVEAQG  238 (282)
Q Consensus       191 l~~~~~~~~~~~l~~i~~R~~eI~~le~si~eL~~lF~dla~LV~~Qg  238 (282)
                      +......++...+.++++|+++|.+||++|.||++||.|||+||++|.
T Consensus       149 ~~~~~~~~~~~~~~~i~eR~~eI~~Ie~sI~eL~~iF~dLa~LV~eQ~  196 (196)
T d1fioa_         149 LNANRRGEAKTALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQ  196 (196)
T ss_dssp             C------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccC
Confidence            333334456789999999999999999999999999999999999984
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1hs7a_ a.47.2.1 (A:) Vam3p N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1quua1 a.7.1.1 (A:1-124) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u5pa1 a.7.1.1 (A:1662-1771) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure