Citrus Sinensis ID: 036298

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------37
MAISKLERSQFEKIVKSTCSSSWKPLPEDVLQKTVDSCDPRLMAGADVLSTLAKMPAHDVEVLDRHESDNNSLNDGYQESHEDLAKYIDALKNEEDIARCIDTDRLIDQLESIENEIVSNHNFIRDSYRSKFGDLECLLPRPLHYALLAKAISTAGPRLEEVVDITSAEYFSLPCRLKEDLSDETQDRLVKVFKESPISRSWEPLPEDVLQMTMDACDRVIALDSEKKMLFDVLTSKVVHVAPNLCEVVGSGIIAAKLMAAAGALTNLANMPASEIEVLGRQKSDNISFYEGYLESTEMFQATTLCMRERARQLLAEKLKEAASVDLKRGDVSGSAGRALRDEILGTIEYEIRPPKTKFQLRRKTTGT
cHHcHHHHHHHHHHHHHHcccccccccHHHHccccccccccccccHHHHHccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHccccccccccccEEcccccccccHHHHHcHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccc
ccHHHHHHHHHHHHHHccccccccccHHHHHHccEEcccHHHHHHHHHHHcHHHccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHcccccccHHHHHHHHHHHcccHHHHcccHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHcHHHHHccccccEEEEEcHHHcccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHcccc
MAISKLERSQFEKIVKStcssswkplpedvlqktvdscdprlmAGADVLSTLakmpahdvevldrhesdnnslndgyqeSHEDLAKYIDALKNEEDIARCIDTDRLIDQLESIENEIVSnhnfirdsyrskfgdlecllprpLHYALLAKAISTAGPRLEEVVDITsaeyfslpcrlkedlsdETQDRLVKVFkespisrsweplpedVLQMTMDACDRVIALDSEKKMLFDVLTSKVVHVAPNLCEVVGSGIIAAKLMAAAGALTnlanmpaseievlgrqksdnisfYEGYLESTEMFQATTLCMRERARQLLAEKLKEAASvdlkrgdvsgsagRALRDEILGTieyeirppktkfqlrrkttgt
maisklersqfekivkstcssswkplpedVLQKTVDSCDPRLMAGADVLSTLAKMPAHDVEVLDRHESDNNSLNDGYQESHEDLAKYIDALKNEEDIARCIDTDRLIDQLESIENEIVSNHNFIRDSYRSKFGDLECLLPRPLHYALLAKAISTAGPRLEEVVDITSAEYFSLPCRLKEDLSDETQDRLVKvfkespisrsweplpeDVLQMTMDACDRVIALDSEKKMLFDVLTSKVVHVAPNLCEVVGSGIIAAKLMAAAGALTNLANMPASEIEVLGRQKSDNISFYEGYLESTEMFQATTLCMRERARQLLAEKLKeaasvdlkrgdvsgsagraLRDEIlgtieyeirppktkfqlrrkttgt
MAISKLERSQFEKIVKSTCSSSWKPLPEDVLQKTVDSCDPRLMAGADVLSTLAKMPAHDVEVLDRHESDNNSLNDGYQESHEDLAKYIDALKNEEDIARCIDTDRLIDQLESIENEIVSNHNFIRDSYRSKFGDLECLLPRPLHYALLAKAISTAGPRLEEVVDITSAEYFSLPCRLKEDLSDETQDRLVKVFKESPISRSWEPLPEDVLQMTMDACDRVIALDSEKKMLFDVLTSKVVHVAPNLCEVVGSgiiaaklmaaagalTNLANMPASEIEVLGRQKSDNISFYEGYLESTEMFQATTLCMRERARQLLAEKLKEAASVDLKRGDVSGSAGRALRDEILGTIEYEIRPPKTKFQLRRKTTGT
*************************************CDPRLMAGADVLSTL*******************************LAKYIDALKNEEDIARCIDTDRLIDQLESIENEIVSNHNFIRDSYRSKFGDLECLLPRPLHYALLAKAISTAGPRLEEVVDITSAEYFSLPCRLKEDL******RLVKVFKE**ISRSWEPLPEDVLQMTMDACDRVIALDSEKKMLFDVLTSKVVHVAPNLCEVVGSGIIAAKLMAAAGALTNLANMPASEIEVLGRQKSDNISFYEGYLESTEMFQATTLCMRERARQLLA***********************LRDEILGTIEYEI****************
****K*E***********CSSSWKPLPEDVLQKTVDSCDPRLMA*ADVLSTLAKMPAHDVEVLDR******************************DIARCIDTDRLIDQLESIENEIVSNHNFIRDSYRSKFGDLECLLPRPLHYALLAKAISTAGPRLEEVVDITSAEYFSLPCRLKEDLSDETQDRLVKVFKE**********PEDVLQMTMDACDRVIALDSEKKMLFDVLTSKVVHVAPNLCEVVGSGIIAAKLMAAAGALTNLANMPASEI***************GYLESTEMFQATTLCMRERARQLLAEKLKEAASVDLKRGDVSGSAGRALRDEILGTIEY******************
MAISKLERSQFEKIVKSTCSSSWKPLPEDVLQKTVDSCDPRLMAGADVLSTLAKMPAHDVEVLDRHESDNNSLNDGYQESHEDLAKYIDALKNEEDIARCIDTDRLIDQLESIENEIVSNHNFIRDSYRSKFGDLECLLPRPLHYALLAKAISTAGPRLEEVVDITSAEYFSLPCRLKEDLSDETQDRLVKVFKESPISRSWEPLPEDVLQMTMDACDRVIALDSEKKMLFDVLTSKVVHVAPNLCEVVGSGIIAAKLMAAAGALTNLANMPASEIEVLGRQKSDNISFYEGYLESTEMFQATTLCMRERARQLLAEKLKEAASVDLKRGDVSGSAGRALRDEILGTIEYEIRPPKTK**********
*******RSQFEKIVKSTCSSSWKPLPEDVLQKTVDSCDPRLMAGADVLSTLAKMPAHDVEVLDRHESDNNSLNDGYQESHEDLAKYIDALKNEEDIARCIDTDRLIDQLESIENEIVSNHNFIRDSYRSKFGDLECLLPRPLHYALLAKAISTAGPRLEEVVDITSAEYFSLPCRLKEDLSDETQDRLVKVFKESPISRSWEPLPEDVLQMTMDACDRVIALDSEKKMLFDVLTSKVVHVAPNLCEVVGSGIIAAKLMAAAGALTNLANMPASEIEVLGRQKSDNISFYEGYLESTEMFQATTLCMRERARQLLAEKLKEAASVDLKRGDVSGSAGRALRDEILGTIEYEIRPPK************
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MAISKLERSQFEKIVKSTCSSSWKPLPEDVLQKTVDSCDPRLMAGADVLSTLAKMPAHDVEVLDRHESDNNSLNDGYQESHEDLAKYIDALKNEEDIARCIDTDRLIDQLESIENEIVSNHNFIRDSYRSKFGDLECLLPRPLHYALLAKAISTAGPRLEEVVDITSAEYFSLPCRLKEDLSDETQDRLVKVFKESPISRSWEPLPEDVLQMTMDACDRVIALDSEKKMLFDVLTSKVVHVAPNLCEVVGSGIIAAKLMAAAGALTNLANMPASEIEVLGRQKSDNISFYEGYLESTEMFQATTLCMRERARQLLAEKLKEAASVDLKRGDVSGSAGRALRDEILGTIEYEIRPPKTKFQLRRKTTGT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query368 2.2.26 [Sep-21-2011]
Q8CCF0 499 U4/U6 small nuclear ribon yes no 0.622 0.458 0.300 1e-23
Q8WWY3 499 U4/U6 small nuclear ribon yes no 0.622 0.458 0.304 6e-22
Q5U5C5 498 U4/U6 small nuclear ribon N/A no 0.622 0.459 0.288 6e-22
Q6NVP6 498 U4/U6 small nuclear ribon yes no 0.717 0.530 0.268 6e-22
Q7SXM7 508 U4/U6 small nuclear ribon yes no 0.720 0.521 0.270 1e-21
O42904 518 Pre-mRNA-processing facto yes no 0.614 0.436 0.272 4e-16
Q54MT2 540 Nucleolar protein 56 OS=D no no 0.426 0.290 0.312 9e-11
P49704 494 Pre-mRNA-processing facto yes no 0.614 0.457 0.261 4e-10
Q4PBF2 582 Nucleolar protein 58 OS=U N/A no 0.426 0.269 0.272 6e-09
O04658 533 Probable nucleolar protei no no 0.429 0.296 0.273 6e-09
>sp|Q8CCF0|PRP31_MOUSE U4/U6 small nuclear ribonucleoprotein Prp31 OS=Mus musculus GN=Prpf31 PE=2 SV=3 Back     alignment and function desciption
 Score =  110 bits (276), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/253 (30%), Positives = 123/253 (48%), Gaps = 24/253 (9%)

Query: 113 IENEIVSNHNFIRDSYRSKFGDLECLLPRPLHYALLAKAISTAGPRLEEVVDITSAEYFS 172
           IENE+   H FIRD Y  +F +LE L+P  L Y    K +   G  L++           
Sbjct: 103 IENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKEL---GNSLDK----------- 148

Query: 173 LPCRLKEDLSDETQDRLVKVFKESPISRSWEPLPEDVLQMTMDACDRVIALDSEKKMLFD 232
             C+  E+L     +  + V   +  +   + L ++ L+   +ACD  + L++ K  +++
Sbjct: 149 --CKNNENLQQILTNATIMVVSVTASTTQGQQLSDEELERLEEACDMALELNASKHRIYE 206

Query: 233 VLTSKVVHVAPNLCEVVGSGIIAAKLMAAAGALTNLANMPASEIEVLGRQKSDNISF--- 289
            + S++  +APNL  ++G+   AAK+M  AG LTNL+ MPA  I +LG Q+     F   
Sbjct: 207 YVESRMSFIAPNLSIIIGAS-TAAKIMGVAGGLTNLSKMPACNIMLLGAQRKTLSGFSST 265

Query: 290 ----YEGYLESTEMFQATTLCMRERARQLLAEKLKEAASVDLKRGDVSGSAGRALRDEIL 345
               + GY+  +++ Q+    +R +A +L+A K   AA VD       G  G  L+DEI 
Sbjct: 266 SVLPHTGYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVDSFHESTEGKVGYELKDEIE 325

Query: 346 GTIEYEIRPPKTK 358
              +    PP  K
Sbjct: 326 RKFDKWQEPPPVK 338
Involved in pre-mRNA splicing. Required for U4/U6.U5 tri-snRNP formation.
Mus musculus (taxid: 10090)
>sp|Q8WWY3|PRP31_HUMAN U4/U6 small nuclear ribonucleoprotein Prp31 OS=Homo sapiens GN=PRPF31 PE=1 SV=2 Back     alignment and function description
>sp|Q5U5C5|PRP31_XENLA U4/U6 small nuclear ribonucleoprotein Prp31 OS=Xenopus laevis GN=prpf31 PE=2 SV=1 Back     alignment and function description
>sp|Q6NVP6|PRP31_XENTR U4/U6 small nuclear ribonucleoprotein Prp31 OS=Xenopus tropicalis GN=prpf31 PE=2 SV=1 Back     alignment and function description
>sp|Q7SXM7|PRP31_DANRE U4/U6 small nuclear ribonucleoprotein Prp31 OS=Danio rerio GN=prpf31 PE=2 SV=1 Back     alignment and function description
>sp|O42904|PRP31_SCHPO Pre-mRNA-processing factor 31 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=prp31 PE=3 SV=1 Back     alignment and function description
>sp|Q54MT2|NOP56_DICDI Nucleolar protein 56 OS=Dictyostelium discoideum GN=nop56 PE=3 SV=1 Back     alignment and function description
>sp|P49704|PRP31_YEAST Pre-mRNA-processing factor 31 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRP31 PE=1 SV=2 Back     alignment and function description
>sp|Q4PBF2|NOP58_USTMA Nucleolar protein 58 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=NOP58 PE=3 SV=1 Back     alignment and function description
>sp|O04658|NOP5A_ARATH Probable nucleolar protein 5-1 OS=Arabidopsis thaliana GN=NOP5-1 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query368
224064342 486 predicted protein [Populus trichocarpa] 0.760 0.576 0.386 5e-43
224128007 483 predicted protein [Populus trichocarpa] 0.614 0.467 0.429 8e-43
124359772 484 Pre-mRNA processing ribonucleoprotein, b 0.763 0.580 0.376 2e-42
357504275438 U4/U6 small nuclear ribonucleoprotein Pr 0.763 0.641 0.376 3e-42
296086542 523 unnamed protein product [Vitis vinifera] 0.698 0.491 0.392 7e-42
225424693 489 PREDICTED: U4/U6 small nuclear ribonucle 0.698 0.525 0.392 7e-42
297792147455 hypothetical protein ARALYDRAFT_331322 [ 0.687 0.556 0.402 2e-41
356571467 486 PREDICTED: U4/U6 small nuclear ribonucle 0.616 0.467 0.422 3e-41
356558773 486 PREDICTED: U4/U6 small nuclear ribonucle 0.616 0.467 0.422 4e-41
297840533 480 EMB1220 [Arabidopsis lyrata subsp. lyrat 0.616 0.472 0.399 2e-39
>gi|224064342|ref|XP_002301428.1| predicted protein [Populus trichocarpa] gi|222843154|gb|EEE80701.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  181 bits (459), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 123/318 (38%), Positives = 173/318 (54%), Gaps = 38/318 (11%)

Query: 59  DVEVLDRHESDNNSLNDGYQESHEDLAKYIDALKNEEDI---ARCIDTD---RLIDQLES 112
           D+E L+  + D+ S     Q  ++ + K  DAL+   D+      ++ D   +LI    +
Sbjct: 44  DIEALNYDDLDSVSKLQKTQRFNDIMQKVEDALQKGSDVQDHGMVLEDDPEYQLIVNCNA 103

Query: 113 ----IENEIVSNHNFIRDSYRSKFGDLECLLPRPLHYALLAKAISTAGPRLEEVVDITSA 168
               IENEIV  HNFIRD YR KF +LE L+  P+ YA + K I          +D+T  
Sbjct: 104 LSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNE-------MDLTLV 156

Query: 169 EYFSL-PCRLKEDLSDETQDRLVKVFKESPISRSWEPLPEDVLQMTMDACDRVIALDSEK 227
           +   L P  ++             V   +  + S +PLPE+VLQ T+DAC+R +ALDS K
Sbjct: 157 DMEGLIPAAIR------------MVISVTASTTSGKPLPEEVLQKTIDACNRALALDSAK 204

Query: 228 KMLFDVLTSKVVHVAPNLCEVVGSGIIAAKLMAAAGALTNLANMPASEIEVLGRQKSD-- 285
           K + D + +++ ++APNL  +VGS  +AAKLM  AG LT LA MPA  +++LG +K +  
Sbjct: 205 KKVLDFVETRMGYIAPNLSAIVGSA-VAAKLMGMAGGLTALAKMPACNVQLLGAKKKNLA 263

Query: 286 -----NISFYEGYLESTEMFQATTLCMRERARQLLAEKLKEAASVDLKRGDVSGSAGRAL 340
                   F  GY+E TE+FQ+T   +R RA +LLA K   AA VD  RGD SG+ GR L
Sbjct: 264 GFSTATSQFRVGYIEQTEVFQSTPPSLRMRAGRLLAAKSTLAARVDSTRGDPSGNTGRTL 323

Query: 341 RDEILGTIEYEIRPPKTK 358
           R+EI   IE    PP  K
Sbjct: 324 REEIHKKIEKWQEPPPAK 341

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224128007|ref|XP_002320218.1| predicted protein [Populus trichocarpa] gi|222860991|gb|EEE98533.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|124359772|gb|ABN06098.1| Pre-mRNA processing ribonucleoprotein, binding region; NOSIC [Medicago truncatula] Back     alignment and taxonomy information
>gi|357504275|ref|XP_003622426.1| U4/U6 small nuclear ribonucleoprotein Prp31 [Medicago truncatula] gi|355497441|gb|AES78644.1| U4/U6 small nuclear ribonucleoprotein Prp31 [Medicago truncatula] Back     alignment and taxonomy information
>gi|296086542|emb|CBI32131.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225424693|ref|XP_002263653.1| PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297792147|ref|XP_002863958.1| hypothetical protein ARALYDRAFT_331322 [Arabidopsis lyrata subsp. lyrata] gi|297309793|gb|EFH40217.1| hypothetical protein ARALYDRAFT_331322 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356571467|ref|XP_003553898.1| PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31-like [Glycine max] Back     alignment and taxonomy information
>gi|356558773|ref|XP_003547677.1| PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31-like [Glycine max] Back     alignment and taxonomy information
>gi|297840533|ref|XP_002888148.1| EMB1220 [Arabidopsis lyrata subsp. lyrata] gi|297333989|gb|EFH64407.1| EMB1220 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query368
TAIR|locus:2195698 485 emb1220 "AT1G60170" [Arabidops 0.483 0.367 0.360 2.7e-35
UNIPROTKB|E7ESA8 450 PRPF31 "U4/U6 small nuclear ri 0.622 0.508 0.276 2.1e-18
UNIPROTKB|E1BM48 499 PRPF31 "Uncharacterized protei 0.622 0.458 0.276 3e-18
UNIPROTKB|F1PKI0 499 PRPF31 "Uncharacterized protei 0.622 0.458 0.276 3e-18
UNIPROTKB|Q8WWY3 499 PRPF31 "U4/U6 small nuclear ri 0.622 0.458 0.276 3e-18
UNIPROTKB|F1RNI3 499 PRPF31 "Uncharacterized protei 0.622 0.458 0.272 7.3e-18
MGI|MGI:1916238 499 Prpf31 "PRP31 pre-mRNA process 0.622 0.458 0.272 7.3e-18
ZFIN|ZDB-GENE-040426-1561 508 prpf31 "PRP31 pre-mRNA process 0.720 0.521 0.25 1.3e-16
UNIPROTKB|Q5U5C5 498 prpf31 "U4/U6 small nuclear ri 0.622 0.459 0.260 3.9e-16
UNIPROTKB|Q6NVP6 498 prpf31 "U4/U6 small nuclear ri 0.622 0.459 0.260 5.1e-16
TAIR|locus:2195698 emb1220 "AT1G60170" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 280 (103.6 bits), Expect = 2.7e-35, Sum P(2) = 2.7e-35
 Identities = 67/186 (36%), Positives = 99/186 (53%)

Query:   180 DLSDETQDRLVKVFKESPISRSWEPLPEDVLQMTMDACDRVIALDSEKKMLFDVLTSKVV 239
             DL+D     ++ V   + ++     LPEDVLQ  ++ACDR + LDS +K + + + SK+ 
Sbjct:   155 DLADLLPSAIIMVVSVTALTTKGSALPEDVLQKVLEACDRALDLDSARKKVLEFVESKMG 214

Query:   240 HVAPNLCEVVGSXXXXXXXXXXXXXXTNLANMPASEIEVLGRQKSDNISFYE-------G 292
              +APNL  +VGS                LA MPA  ++VLG ++ +   F         G
Sbjct:   215 SIAPNLSAIVGSAVAAKLMGTAGGLSA-LAKMPACNVQVLGHKRKNLAGFSSATSQSRVG 273

Query:   293 YLESTEMFQATTLCMRERARQLLAEKLKEAASVDLKRGDVSGSAGRALRDEILGTIEYEI 352
             YLE TE++Q+T   ++ RA +L+A K   AA VD  RGD  G +G+A R+EI   IE   
Sbjct:   274 YLEQTEIYQSTPPGLQARAGRLVAAKSTLAARVDATRGDPLGISGKAFREEIRKKIEKWQ 333

Query:   353 RPPKTK 358
              PP  +
Sbjct:   334 EPPPAR 339
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0009793 "embryo development ending in seed dormancy" evidence=NAS
UNIPROTKB|E7ESA8 PRPF31 "U4/U6 small nuclear ribonucleoprotein Prp31" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1BM48 PRPF31 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1PKI0 PRPF31 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q8WWY3 PRPF31 "U4/U6 small nuclear ribonucleoprotein Prp31" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1RNI3 PRPF31 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1916238 Prpf31 "PRP31 pre-mRNA processing factor 31 homolog (yeast)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1561 prpf31 "PRP31 pre-mRNA processing factor 31 homolog (yeast)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q5U5C5 prpf31 "U4/U6 small nuclear ribonucleoprotein Prp31" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|Q6NVP6 prpf31 "U4/U6 small nuclear ribonucleoprotein Prp31" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00021631
hypothetical protein (486 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_Genewise1_v1.C_LG_XIII3357
hypothetical protein (820 aa)
    • • 0.511
estExt_fgenesh4_pg.C_LG_IX0484
phenylalanyl-tRNA synthetase alpha chain (EC-6.1.1.20) (484 aa)
  ••  • 0.488
gw1.82.79.1
annotation not avaliable (141 aa)
  •     0.461
eugene3.00041113
hypothetical protein (144 aa)
  •     0.445
estExt_fgenesh4_kg.C_LG_XVII0009
SubName- Full=Putative uncharacterized protein; (144 aa)
  •     0.444
eugene3.00140720
SubName- Full=Putative uncharacterized protein; (188 aa)
  •     0.426
eugene3.00130126
SubName- Full=Putative uncharacterized protein; (187 aa)
  •     0.417
eugene3.00021777
hypothetical protein (187 aa)
  •     0.408
eugene3.01330055
SubName- Full=Putative uncharacterized protein; (187 aa)
  •     0.407
fgenesh4_pm.C_LG_III000548
RecName- Full=Ribosomal protein S27; (86 aa)
  • •   0.402

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query368
pfam01798149 pfam01798, Nop, Putative snoRNA binding domain 2e-24
COG1498395 COG1498, SIK1, Protein implicated in ribosomal bio 3e-18
PRK14552414 PRK14552, PRK14552, C/D box methylation guide ribo 2e-07
smart0093152 smart00931, NOSIC, NOSIC (NUC001) domain 7e-06
pfam0806052 pfam08060, NOSIC, NOSIC (NUC001) domain 1e-04
>gnl|CDD|216709 pfam01798, Nop, Putative snoRNA binding domain Back     alignment and domain information 
 Score = 97.3 bits (243), Expect = 2e-24
 Identities = 47/146 (32%), Positives = 80/146 (54%), Gaps = 8/146 (5%)

Query: 216 ACDRVIALDSEKKMLFDVLTSKVVHVAPNLCEVVGSGIIAAKLMAAAGALTNLANMPASE 275
            C+R+++L   +K L + + SK+  +APNL  +VG  ++ A+L++ AG+LTNLA +PAS 
Sbjct: 5   FCERILSLAEYRKQLEEYIESKMSKIAPNLTALVGE-LVGARLISHAGSLTNLAKLPAST 63

Query: 276 IEVLGRQKSDNISFY-------EGYLESTEMFQATTLCMRERARQLLAEKLKEAASVDLK 328
           I+VLG +K+   +          G +  + + Q     +R +  ++LA KL  AA +D  
Sbjct: 64  IQVLGAEKALFRALKTKAKTPKYGLIYHSPLIQKAPPKVRGKIARMLAAKLALAARIDAF 123

Query: 329 RGDVSGSAGRALRDEILGTIEYEIRP 354
             +  GS G  LR+E+   +E     
Sbjct: 124 SEEPDGSFGIELREELEKRLEKLEEK 149

This family consists of various Pre RNA processing ribonucleoproteins. The function of the aligned region is unknown however it may be a common RNA or snoRNA or Nop1p binding domain. Nop5p (Nop58p) from yeast is the protein component of a ribonucleoprotein protein required for pre-18s rRNA processing and is suggested to function with Nop1p in a snoRNA complex. Nop56p and Nop5p interact with Nop1p and are required for ribosome biogenesis. Prp31p is required for pre-mRNA splicing in S. cerevisiae. Length = 149
>gnl|CDD|224415 COG1498, SIK1, Protein implicated in ribosomal biogenesis, Nop56p homolog [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional Back     alignment and domain information
>gnl|CDD|197999 smart00931, NOSIC, NOSIC (NUC001) domain Back     alignment and domain information
>gnl|CDD|203845 pfam08060, NOSIC, NOSIC (NUC001) domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 368
KOG2572498 consensus Ribosome biogenesis protein - Nop58p/Nop 100.0
KOG2573498 consensus Ribosome biogenesis protein - Nop56p/Sik 100.0
COG1498395 SIK1 Protein implicated in ribosomal biogenesis, N 100.0
PRK14552414 C/D box methylation guide ribonucleoprotein comple 100.0
KOG2574 492 consensus mRNA splicing factor PRP31 [RNA processi 100.0
PF01798150 Nop: Putative snoRNA binding domain; InterPro: IPR 100.0
PF0806053 NOSIC: NOSIC (NUC001) domain; InterPro: IPR012976 99.84
PF14918271 MTBP_N: MDM2-binding 83.5
>KOG2572 consensus Ribosome biogenesis protein - Nop58p/Nop5p [RNA processing and modification; Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=1.6e-86  Score=655.04  Aligned_cols=312  Identities=22%  Similarity=0.309  Sum_probs=290.3

Q ss_pred             HHHHhhhccCCCCCCcHHHHHh------------------------hhhhcChhhhhhhhhhhhhhcCCCCCceeecccc
Q 036298           12 EKIVKSTCSSSWKPLPEDVLQK------------------------TVDSCDPRLMAGADVLSTLAKMPAHDVEVLDRHE   67 (368)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~d~~l~~~~~~~~~~~k~~~~~~~~~~~~~   67 (368)
                      .+.||+.+|.+|.++.+ +|.+                        ++.++|++|+.      .|.+  +++++||.   
T Consensus        39 ~~~~kl~~f~kf~~ta~-alea~~~l~eGkvs~~L~k~lk~~~~~etLaVaD~KLgn------~i~e--kL~~~~v~---  106 (498)
T KOG2572|consen   39 LKMVKLVAFEKFDSTAE-ALEAVTALAEGKVSSGLEKFLKLNKKKETLAVADAKLGN------AIKE--KLSINCVH---  106 (498)
T ss_pred             HHHHHHHHHHhhhhHHH-HHHHHHHHHcCCcchhHHHHHHhhccCCeeeeccHHHhH------HHHH--hhcceeec---
Confidence            47889999999998876 5543                        45677888876      6777  69999998   


Q ss_pred             ccccchhhhhHhHHHHHHHHHHhhchhh----------hh--------hhhcCHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 036298           68 SDNNSLNDGYQESHEDLAKYIDALKNEE----------DI--------ARCIDTD--RLIDQLESIENEIVSNHNFIRDS  127 (368)
Q Consensus        68 ~~~~~~~~~~~~~r~~~~~~i~~~~~~~----------~~--------~~~id~~--~~i~lld~IdkeIn~~~~rvrew  127 (368)
                        +.++++++||+|+|+..||+++...+          ++        +.+||||  |+|.|||++|+|+|+|.||||||
T Consensus       107 --~~~v~el~RgiRs~l~el~~g~~~~dl~~msLglaHslar~Klkfs~dKvDtmIiQaisLLDDLDkeLNtY~mRvrEw  184 (498)
T KOG2572|consen  107 --DSAVMELLRGIRSQLTELISGLNDSDLAAMSLGLAHSLARYKLKFSPDKVDTMIIQAISLLDDLDKELNTYAMRVKEW  184 (498)
T ss_pred             --chhHHHHHHHHHHHHHHHhccCChhhhhHHHHHHHHHHHhhhcccCcchhhHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence              77999999999999999999998766          22        2379999  99999999999999999999999


Q ss_pred             hhcccCcccccCCCcHHHHHHHHHHhccCCCcccccccccccccCcchhhhccCCccchhhhhhhhcccccccCCCCCCH
Q 036298          128 YRSKFGDLECLLPRPLHYALLAKAISTAGPRLEEVVDITSAEYFSLPCRLKEDLSDETQDRLVKVFKESPISRSWEPLPE  207 (368)
Q Consensus       128 Y~~hFPEL~siv~d~~~Ya~~V~~ign~~~~l~~i~d~~~~d~~~L~~~L~~iL~~~~~~~~v~v~~~aA~~S~G~~Lse  207 (368)
                      ||||||||.+||.||+.|+++|+.+|+|       .+....|       |+++|| ++.+..+   .++|..|||+++++
T Consensus       185 YGwHFPEL~kii~dn~~Yak~vk~mG~r-------~~~a~~d-------~sEil~-eeiE~~~---k~aAeiSMgteis~  246 (498)
T KOG2572|consen  185 YGWHFPELAKIIQDNYAYAKLVKAMGVR-------CNAASLD-------FSEILP-EEIEAEL---KEAAEISMGTEISD  246 (498)
T ss_pred             HhhhhHHHHHHHHhhHHHHHHHHHHhHh-------hhhhccc-------HHhhch-HHHHHHH---HhhhhhhhcccccH
Confidence            9999999999999999999999999999       8999888       999999 7788777   45999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcccCchhhhhccHHHHHHHHHHhCchhhhhcCCchhhhhhcccccCC-
Q 036298          208 DVLQMTMDACDRVIALDSEKKMLFDVLTSKVVHVAPNLCEVVGSGIIAAKLMAAAGALTNLANMPASEIEVLGRQKSDN-  286 (368)
Q Consensus       208 ~dl~~I~~~~~~vi~L~~~R~~L~~Yl~srM~~IAPNLtaLvG~~~vaArLIs~AGsL~~LAk~PAstIQiLGAeKalf-  286 (368)
                      .|+.+|..+|++|+++.+||.+|.+||++||..||||||+|||+. ||||||+|||||.||||+|+||||+|||||||| 
T Consensus       247 ~Dl~nI~~l~dqVle~aeyR~qL~dylknrM~~iAPnLTaLvGEl-VGaRlIshaGSL~nLaK~p~StIQilGAEKALFr  325 (498)
T KOG2572|consen  247 SDLLNIKELCDQVLELAEYRDQLIDYLKNRMRTIAPNLTALVGEL-VGARLISHAGSLFNLAKAPASTIQILGAEKALFR  325 (498)
T ss_pred             hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHH-HHHHHHHhhhhHHHHhhCChhHHHHHhhHHHHHH
Confidence            999999999999999999999999999999999999999999999 999999999999999999999999999999999 


Q ss_pred             ------CCCCcceeeeccccccCChhhhhhHHHHhhhhHHHHHhhcccCCCCCCchhHHHHHHHHHHHHHhcCCCC
Q 036298          287 ------ISFYEGYLESTEMFQATTLCMRERARQLLAEKLKEAASVDLKRGDVSGSAGRALRDEILGTIEYEIRPPK  356 (368)
Q Consensus       287 ------~tpk~GlIy~s~lV~~ap~~~rgKiaR~LAaK~aLAARiD~~~~~~~g~~G~~lr~~Ie~ki~kl~epP~  356 (368)
                            .|||||+|||+++|+++||+++|||+|.||+|++||+|+|+++++.+|.+|.+.|.++|+||+.+++.-.
T Consensus       326 ALKtk~~TPKYGLIyhasLVgQa~pKnKGKIaR~LAaK~alA~R~Dalge~~~~~iGve~R~klE~rlr~lE~r~l  401 (498)
T KOG2572|consen  326 ALKTKHDTPKYGLIYHASLVGQASPKNKGKIARSLAAKTALAARIDALGEESTNEIGVENRAKLEKRLRSLEGRDL  401 (498)
T ss_pred             HHhcccCCCCCcceeccchhccCCcccccHHHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHhhhhccCc
Confidence                  3999999999999999999999999999999999999999999999999999999999999999986543

>KOG2573 consensus Ribosome biogenesis protein - Nop56p/Sik1p [RNA processing and modification; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG1498 SIK1 Protein implicated in ribosomal biogenesis, Nop56p homolog [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK14552 C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional Back     alignment and domain information
>KOG2574 consensus mRNA splicing factor PRP31 [RNA processing and modification] Back     alignment and domain information
>PF01798 Nop: Putative snoRNA binding domain; InterPro: IPR002687 This domain is present in various pre-mRNA processing ribonucleoproteins Back     alignment and domain information
>PF08060 NOSIC: NOSIC (NUC001) domain; InterPro: IPR012976 This is the central domain in Nop56/SIK1-like proteins [] Back     alignment and domain information
>PF14918 MTBP_N: MDM2-binding Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query368
3siu_B254 Structure Of A Hprp31-15.5k-U4atac 5' Stem Loop Com 2e-17
2ozb_B260 Structure Of A Human Prp31-15.5k-U4 Snrna Complex L 2e-17
>pdb|3SIU|B Chain B, Structure Of A Hprp31-15.5k-U4atac 5' Stem Loop Complex, Monomeric Form Length = 254 Back     alignment and structure 
Iteration: 1

 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 111/239 (46%), Gaps = 24/239 (10%)
Query: 113 IENEIVSNHNFIRDSYRSKFGDLECLLPRPLHYALLAKAISTAGPRLEEVVDITSAEYFS 172
           IENE+   H FIRD Y  +F +LE L+P  L Y    + +   G  L++           
Sbjct: 24  IENELNIIHKFIRDKYSKRFPELESLVPNALDYI---RTVKELGNSLDK----------- 69
Query: 173 LPCRLKEDLSDETQDRLVKVFKESPISRSWEPLPEDVLQMTMDACDRVIALDSEKKMLFD 232
             C+  E+L     +  + V   +  +   + L E+ L+   +ACD  + L++ K  +++
Sbjct: 70  --CKNNENLQQILTNATIMVVSVTASTTQGQQLSEEELERLEEACDMALELNASKHRIYE 127
Query: 233 VLTSKVVHVAPNLCEVVGSXXXXXXXXXXXXXXTNLANMPASEIEVLGRQKSDNISF--- 289
            + S++  +APNL  ++G+              TNL+ MPA  I +LG Q+     F   
Sbjct: 128 YVESRMSFIAPNLSIIIGA-STAAKIMGVAGGLTNLSKMPACNIMLLGAQRKTLSGFSST 186
Query: 290 ----YEGYLESTEMFQATTLCMRERARQLLAEKLKEAASVDLKRGDVSGSAGRALRDEI 344
               + GY+  +++ Q+    +R +A +L+A K   AA VD       G  G  L+DEI
Sbjct: 187 SVLPHTGYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVDSFHESTEGKVGYELKDEI 245
>pdb|2OZB|B Chain B, Structure Of A Human Prp31-15.5k-U4 Snrna Complex Length = 260 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query368
2ozb_B260 U4/U6 small nuclear ribonucleoprotein PRP31; RNA-p 2e-33
3icx_A255 PRE mRNA splicing protein; C/D guide RNA, 2'-O-met 2e-30
3pla_A388 NOP5, PRE mRNA splicing protein; RNA-binding, SAM, 1e-28
2nnw_A376 NOP5/NOP56 related protein; box C/D; 2.70A {Pyroco 1e-28
3gqu_A169 NOP5P protein; RNA binding domain, RNA binding pro 2e-22
1nt2_B258 Conserved hypothetical protein; adeMet, binding mo 8e-16
3id6_A268 NOP5, PRE mRNA splicing protein; C/D guide RNA, 2' 5e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>2ozb_B U4/U6 small nuclear ribonucleoprotein PRP31; RNA-protein complex, ribonucleoprotein particle (RNP), PRE-M splicing, U4/U6 DI-snRNA, U4/U6 DI-snRNP; 2.60A {Homo sapiens} SCOP: a.183.1.1 PDB: 3siu_B 3siv_B Length = 260 Back     alignment and structure
 Score =  123 bits (310), Expect = 2e-33
 Identities = 76/257 (29%), Positives = 123/257 (47%), Gaps = 28/257 (10%)

Query: 104 DRLIDQ----LESIENEIVSNHNFIRDSYRSKFGDLECLLPRPLHYALLAKAISTAGPRL 159
            R+I         IENE+   H FIRD Y  +F +LE L+P  L Y    K +   G  L
Sbjct: 17  YRVIVDANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKEL---GNSL 73

Query: 160 EEVVDITSAEYFSLPCRLKEDLSDETQDRLVKVFKESPISRSWEPLPEDVLQMTMDACDR 219
           ++             C+  E+L     +  + V   +  +   + L E+ L+   +ACD 
Sbjct: 74  DK-------------CKNNENLQQILTNATIMVVSVTASTTQGQQLSEEELERLEEACDM 120

Query: 220 VIALDSEKKMLFDVLTSKVVHVAPNLCEVVGSGIIAAKLMAAAGALTNLANMPASEIEVL 279
            + L++ K  +++ + S++  +APNL  ++G+   AAK+M  AG LTNL+ MPA  I +L
Sbjct: 121 ALELNASKHRIYEYVESRMSFIAPNLSIIIGA-STAAKIMGVAGGLTNLSKMPACNIMLL 179

Query: 280 GRQKSDNISF-------YEGYLESTEMFQATTLCMRERARQLLAEKLKEAASVDLKRGDV 332
           G Q+     F       + GY+  +++ Q+    +R +A +L+A K   AA VD      
Sbjct: 180 GAQRKTLSGFSSTSVLPHTGYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVDSFHEST 239

Query: 333 SGSAGRALRDEILGTIE 349
            G  G  L+DEI    +
Sbjct: 240 EGKVGYELKDEIERKFD 256
>3icx_A PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, RNA binding PR; 3.10A {Sulfolobus solfataricus} Length = 255 Back     alignment and structure
>3pla_A NOP5, PRE mRNA splicing protein; RNA-binding, SAM, box C/D RNA; HET: SAH; 3.15A {Sulfolobus solfataricus} PDB: 3id5_A* Length = 388 Back     alignment and structure
>2nnw_A NOP5/NOP56 related protein; box C/D; 2.70A {Pyrococcus furiosus} PDB: 3nvi_A 3nmu_A 3nvk_A* 3nvm_A Length = 376 Back     alignment and structure
>3gqu_A NOP5P protein; RNA binding domain, RNA binding protein; 2.50A {Pyrococcus horikoshii} PDB: 3gqx_B Length = 169 Back     alignment and structure
>1nt2_B Conserved hypothetical protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: a.183.1.1 Length = 258 Back     alignment and structure
>3id6_A NOP5, PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} Length = 268 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query368
3icx_A255 PRE mRNA splicing protein; C/D guide RNA, 2'-O-met 100.0
3pla_A388 NOP5, PRE mRNA splicing protein; RNA-binding, SAM, 100.0
2ozb_B260 U4/U6 small nuclear ribonucleoprotein PRP31; RNA-p 100.0
2nnw_A376 NOP5/NOP56 related protein; box C/D; 2.70A {Pyroco 100.0
1nt2_B258 Conserved hypothetical protein; adeMet, binding mo 100.0
3gqu_A169 NOP5P protein; RNA binding domain, RNA binding pro 100.0
3id6_A268 NOP5, PRE mRNA splicing protein; C/D guide RNA, 2' 100.0
>3icx_A PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, RNA binding PR; 3.10A {Sulfolobus solfataricus} Back     alignment and structure
Probab=100.00  E-value=1.7e-84  Score=616.98  Aligned_cols=236  Identities=24%  Similarity=0.277  Sum_probs=214.0

Q ss_pred             hcCHH--HHHHHHHHHHHHHHHHHHHHHHHhhcccCcccccCCCcHHHHHHHHHHhccCCCcccccccccccccCcchhh
Q 036298          100 CIDTD--RLIDQLESIENEIVSNHNFIRDSYRSKFGDLECLLPRPLHYALLAKAISTAGPRLEEVVDITSAEYFSLPCRL  177 (368)
Q Consensus       100 ~id~~--~~i~lld~IdkeIn~~~~rvrewY~~hFPEL~siv~d~~~Ya~~V~~ign~~~~l~~i~d~~~~d~~~L~~~L  177 (368)
                      ++|+|  |+|.++|+||+|||.||||||||||||||||+++|+||++|+++|+.+||+       .|++..+       |
T Consensus         2 k~D~~Iiqai~lld~iDkein~~~~rvrewY~~~FPEL~~iv~d~~~Yak~V~~ig~~-------~~~~~~~-------l   67 (255)
T 3icx_A            2 KRDLLAIQAVRAMDDIDKTINLFSERLREWYSIHFPELDKLIEDHEEYATIVSRFGDR-------GFLTIDS-------L   67 (255)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHCCCHHHHHHHHHHTCSG-------GGCCHHH-------H
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCcchHhhcCCHHHHHHHHHHHcCC-------CCCChhh-------H
Confidence            35666  999999999999999999999999999999999999999999999999999       9998877       8


Q ss_pred             hcc-CCccchhhhhhhhcccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcccCchhhhhccHHHHH
Q 036298          178 KED-LSDETQDRLVKVFKESPISRSWEPLPEDVLQMTMDACDRVIALDSEKKMLFDVLTSKVVHVAPNLCEVVGSGIIAA  256 (368)
Q Consensus       178 ~~i-L~~~~~~~~v~v~~~aA~~S~G~~Lse~dl~~I~~~~~~vi~L~~~R~~L~~Yl~srM~~IAPNLtaLvG~~~vaA  256 (368)
                      +++ ++ ++++++|++   +|++|||++||++|+.+|..+|+++++|+++|++|.+||++||..||||||+|||+. |||
T Consensus        68 ~~l~l~-~~~~~~i~~---aa~~S~G~~ls~~dl~~i~~~~~~v~~L~~~r~~l~~yl~srM~~iAPNLsaLvG~~-vaA  142 (255)
T 3icx_A           68 KELGFN-EQRINRILD---AAKKSIGADISEDDLSAMRMIANTILDLYNIRRNLNNYLEGVMKEVAPNVTALVGPA-LGA  142 (255)
T ss_dssp             HTTTCC-HHHHHHHHH---HHHTCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHCHH-HHH
T ss_pred             HHccCC-HHHHHHHHH---HHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcHHHHhccH-HHH
Confidence            888 77 889998877   999999999999999999999999999999999999999999999999999999999 999


Q ss_pred             HHHHHhCchhhhhcCCchhhhhhcccccCCC-------CCCcceeeeccccccCChhhhhhHHHHhhhhHHHHHhhcccC
Q 036298          257 KLMAAAGALTNLANMPASEIEVLGRQKSDNI-------SFYEGYLESTEMFQATTLCMRERARQLLAEKLKEAASVDLKR  329 (368)
Q Consensus       257 rLIs~AGsL~~LAk~PAstIQiLGAeKalf~-------tpk~GlIy~s~lV~~ap~~~rgKiaR~LAaK~aLAARiD~~~  329 (368)
                      |||++||||.+||||||||||+|||||++|.       ||||||||||++|+++|+++||||+|+||+||+||||||+|+
T Consensus       143 rLIs~AGgL~~LAk~PAstIqiLGAeKalfr~lkt~~~tPk~G~Iy~s~~V~~ap~~~rgkiaR~LAaK~aLAARiD~~~  222 (255)
T 3icx_A          143 RLLSIAGSLDELAKMPASTIQVLGAEKALFRALRSGGRPPKHGIIFQYPAIHTSPRWQRGKIARALAAKLAIAARVDAFS  222 (255)
T ss_dssp             HHHHHHSSHHHHTTSCHHHHTTCC-------------------GGGGSHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCHHHHhhCChHHHHHhhhhhHHHHHhccCCCCCCeeEEecCHhhhcCCHHHHHHHHHHHHHHHHHHHhhcccC
Confidence            9999999999999999999999999999983       999999999999999999999999999999999999999998


Q ss_pred             CCCCCchhHHHHHHHHHHHHHhcCCCCC
Q 036298          330 GDVSGSAGRALRDEILGTIEYEIRPPKT  357 (368)
Q Consensus       330 ~~~~g~~G~~lr~~Ie~ki~kl~epP~~  357 (368)
                      ++   .+|.+||++|++||++|++|...
T Consensus       223 g~---~~G~~lre~ie~ri~kl~e~~~~  247 (255)
T 3icx_A          223 GR---FIGDQLNEQLKKRIDEIKEKFAQ  247 (255)
T ss_dssp             CC---CCHHHHHHHHHHHHHHHHTTC--
T ss_pred             Cc---ccCHHHHHHHHHHHHHHhCcccc
Confidence            64   57999999999999999999753
>3pla_A NOP5, PRE mRNA splicing protein; RNA-binding, SAM, box C/D RNA; HET: SAH; 3.15A {Sulfolobus solfataricus} PDB: 3id5_A* Back     alignment and structure
>2ozb_B U4/U6 small nuclear ribonucleoprotein PRP31; RNA-protein complex, ribonucleoprotein particle (RNP), PRE-M splicing, U4/U6 DI-snRNA, U4/U6 DI-snRNP; 2.60A {Homo sapiens} SCOP: a.183.1.1 PDB: 3siu_B 3siv_B Back     alignment and structure
>2nnw_A NOP5/NOP56 related protein; box C/D; 2.70A {Pyrococcus furiosus} PDB: 3nvi_A 3nmu_A 3nvk_A* 3nvm_A Back     alignment and structure
>1nt2_B Conserved hypothetical protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: a.183.1.1 Back     alignment and structure
>3gqu_A NOP5P protein; RNA binding domain, RNA binding protein; 2.50A {Pyrococcus horikoshii} PDB: 3gqx_B Back     alignment and structure
>3id6_A NOP5, PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 368
d2ozbb1249 a.183.1.1 (B:85-333) U4/U6 small nuclear ribonucle 2e-38
d1nt2b_256 a.183.1.1 (B:) Nop5p {Archaeon Archaeoglobus fulgi 9e-21
>d2ozbb1 a.183.1.1 (B:85-333) U4/U6 small nuclear ribonucleoprotein Prp31 {Human (Homo sapiens) [TaxId: 9606]} Length = 249 Back     information, alignment and structure

class: All alpha proteins
fold: Nop domain
superfamily: Nop domain
family: Nop domain
domain: U4/U6 small nuclear ribonucleoprotein Prp31
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  135 bits (342), Expect = 2e-38
 Identities = 72/250 (28%), Positives = 121/250 (48%), Gaps = 24/250 (9%)

Query: 107 IDQLESIENEIVSNHNFIRDSYRSKFGDLECLLPRPLHYALLAKAISTAGPRLEEVVDIT 166
            +    IENE+   H FIRD Y  +F +LE L+P  L Y    K +   G  L++  +  
Sbjct: 13  NNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKEL---GNSLDKCKN-- 67

Query: 167 SAEYFSLPCRLKEDLSDETQDRLVKVFKESPISRSWEPLPEDVLQMTMDACDRVIALDSE 226
                       E+L     +  + V   +  +   + L E+ L+   +ACD  + L++ 
Sbjct: 68  -----------NENLQQILTNATIMVVSVTASTTQGQQLSEEELERLEEACDMALELNAS 116

Query: 227 KKMLFDVLTSKVVHVAPNLCEVVGSGIIAAKLMAAAGALTNLANMPASEIEVLGRQKSD- 285
           K  +++ + S++  +APNL  ++G+   AAK+M  AG LTNL+ MPA  I +LG Q+   
Sbjct: 117 KHRIYEYVESRMSFIAPNLSIIIGA-STAAKIMGVAGGLTNLSKMPACNIMLLGAQRKTL 175

Query: 286 ------NISFYEGYLESTEMFQATTLCMRERARQLLAEKLKEAASVDLKRGDVSGSAGRA 339
                 ++  + GY+  +++ Q+    +R +A +L+A K   AA VD       G  G  
Sbjct: 176 SGFSSTSVLPHTGYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVDSFHESTEGKVGYE 235

Query: 340 LRDEILGTIE 349
           L+DEI    +
Sbjct: 236 LKDEIERKFD 245
>d1nt2b_ a.183.1.1 (B:) Nop5p {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 256 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query368
d2ozbb1249 U4/U6 small nuclear ribonucleoprotein Prp31 {Human 100.0
d1nt2b_256 Nop5p {Archaeon Archaeoglobus fulgidus [TaxId: 223 100.0
>d2ozbb1 a.183.1.1 (B:85-333) U4/U6 small nuclear ribonucleoprotein Prp31 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Nop domain
superfamily: Nop domain
family: Nop domain
domain: U4/U6 small nuclear ribonucleoprotein Prp31
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-81  Score=591.45  Aligned_cols=233  Identities=31%  Similarity=0.462  Sum_probs=221.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcccCcccccCCCcHHHHHHHHHHhccCCCcccccccccccccCcchhhhccCCc
Q 036298          104 DRLIDQLESIENEIVSNHNFIRDSYRSKFGDLECLLPRPLHYALLAKAISTAGPRLEEVVDITSAEYFSLPCRLKEDLSD  183 (368)
Q Consensus       104 ~~~i~lld~IdkeIn~~~~rvrewY~~hFPEL~siv~d~~~Ya~~V~~ign~~~~l~~i~d~~~~d~~~L~~~L~~iL~~  183 (368)
                      .|+|+++++||+|||.+|||+||||+||||||++||+||.+|+++|+.|||+       .|++..+     +.|.++|+ 
T Consensus        10 vq~~~l~~~iD~ein~~~~~lrewY~~~FPEL~~lv~~~~~Y~~~V~~i~~~-------~~~~~~~-----~~l~~~l~-   76 (249)
T d2ozbb1          10 VDANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKELGNS-------LDKCKNN-----ENLQQILT-   76 (249)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHCCSHHHHHHHHHHHTTC-------GGGCTTC-----TTGGGTSC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCcChhHHHHcCCHHHHHHHHHHHcCc-------cccccch-----hHHHHhCC-
Confidence            4899999999999999999999999999999999999999999999999999       7776543     23899999 


Q ss_pred             cchhhhhhhhcccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhcccCchhhhhccHHHHHHHHHHhC
Q 036298          184 ETQDRLVKVFKESPISRSWEPLPEDVLQMTMDACDRVIALDSEKKMLFDVLTSKVVHVAPNLCEVVGSGIIAAKLMAAAG  263 (368)
Q Consensus       184 ~~~~~~v~v~~~aA~~S~G~~Lse~dl~~I~~~~~~vi~L~~~R~~L~~Yl~srM~~IAPNLtaLvG~~~vaArLIs~AG  263 (368)
                      ++++|+|++   +|++|||.+|+++|+.+|..+|+++++|+++|+.|.+||++||..||||||||||+. +|||||++||
T Consensus        77 ~~~~~~i~~---aa~~s~G~~ls~~dl~~i~~~~~~i~~L~~~r~~l~~yi~~rm~~iAPNl~aLvG~~-~aArLi~~AG  152 (249)
T d2ozbb1          77 NATIMVVSV---TASTTQGQQLSEEELERLEEACDMALELNASKHRIYEYVESRMSFIAPNLSIIIGAS-TAAKIMGVAG  152 (249)
T ss_dssp             HHHHHHHHH---HHHSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH-HHHHHHHHHT
T ss_pred             HHHHHHHHH---HhcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccHHHHHCch-HHHHHHHHhC
Confidence            899999988   999999999999999999999999999999999999999999999999999999999 9999999999


Q ss_pred             chhhhhcCCchhhhhhcccccCCC-------CCCcceeeeccccccCChhhhhhHHHHhhhhHHHHHhhcccCCCCCCch
Q 036298          264 ALTNLANMPASEIEVLGRQKSDNI-------SFYEGYLESTEMFQATTLCMRERARQLLAEKLKEAASVDLKRGDVSGSA  336 (368)
Q Consensus       264 sL~~LAk~PAstIQiLGAeKalf~-------tpk~GlIy~s~lV~~ap~~~rgKiaR~LAaK~aLAARiD~~~~~~~g~~  336 (368)
                      ||.+||+|||||||+|||+|++|.       +|||||||||++|+++|+++|||++|+||+|||||||||+|+++++|++
T Consensus       153 gL~~LAk~PastIq~LGaeKalf~~l~~~~~~pk~G~i~~~~~V~~~p~~~rgk~~R~lA~K~slAARiD~~~~~~~~~~  232 (249)
T d2ozbb1         153 GLTNLSKMPACNIMLLGAQRKTLSGFSSTSVLPHTGYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVDSFHESTEGKV  232 (249)
T ss_dssp             SHHHHHTSCHHHHTTTTCC----------CCCTTCCTTTTSHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHTTCSTTSHH
T ss_pred             CHHHHHhCChHHHHHHhhhhhhHHHHhcCCCCCCCCeeecCHHHHhCCHHHHHHHHHHHHHHHHHHHHHhHcCCCCCchH
Confidence            999999999999999999999994       9999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhcC
Q 036298          337 GRALRDEILGTIEYEIR  353 (368)
Q Consensus       337 G~~lr~~Ie~ki~kl~e  353 (368)
                      |.+||++|++||+||+|
T Consensus       233 G~~~r~~ie~ki~k~~E  249 (249)
T d2ozbb1         233 GYELKDEIERKFDKWQE  249 (249)
T ss_dssp             HHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHhcC
Confidence            99999999999999987
>d1nt2b_ a.183.1.1 (B:) Nop5p {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure