Citrus Sinensis ID: 036300

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------27
Protein Sequence
MERKEKEALYSTIQGFVGKWWNGSDLYPDPFGRTGLQGVSCDFFHGLWHVSAISIGPVYDNSLVCSQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHcccccccccccccccccccccccEEccccccccEEEcccccccccccccccccccccccccccccccccHHHHHcccccEEEcccccccEEcccccccccccccEEEccccccEEccccccccccccccEEcccccccccccccccccccccEEEcccccccccccHHHHccccccccccccccccccccHHHHccccccEEEcccccccccccHHHHccccccEEEcccccccccccccccccccccccEEcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHcccccccccccccccccccccEEEEccccccccccccHHcccccccEEEcccccccccccccccccccHHHcccccccEEEEcccccccEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHccccccccEEEEcc
Coil and Loop (DISEMBL)
MERKEKEALYSTIQGFVgkwwngsdlypdpfgrtglqgvscdffHGLWHvsaisigpvydnslvcsqckifkpplqspieipssnWQKLANSldslefgsnprligtipTSIDYLKNLQSLVLLEkgltgklpiepsklVNLRRLALAGnqingqipasiGGLTKLLIFDLSrnnlsgsmLLTLGKLARLLKLDLSYNNLqekipkeignlhnvtfldlrsnnflgGLVGSIEEMVSLKEMvvsnnpifggglngirwenlqNLEIWIF
Flexible Loop (DISEMBL)
merkekeaLYSTIQGFVGKWWNGSDLYPDPFGRTGLQGVSCDFFHGLWHVSAISIGPVYDNSLVCSQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPifggglngirwenlqNLEIWIF
Low Complexity Region (SEG)
MERKEKEALYSTIQGFVGKWWNGSDLYPDPFGRTGLQGVSCDFFHGLWHVSAISIGPVYDNSLVCSQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMlltlgklarllkldlSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF
Disordered region (IsUnstruct)
********LYSTIQGFVGKWWNGSDLYPDPFGRTGLQGVSCDFFHGLWHVSAISIGPVYDNSLVCSQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWI*
Disordered Region (DISOPRED)
**RKEKEALYSTIQGFVGKWWNGSDLYPDPFGRTGLQGVSCDFFHGLWHVSAISIGPVYDNSLVCSQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF
Disordered Region (DISEMBL)
*********YSTIQGFVGKWWNGSDLYPDPFGRTGLQGVSCDFFHGLWHVSAISIGPVYDNSLVCSQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF
Disordered Region (DISPRO)
*ERKEKEALYSTIQGFVGKWWNGSDLYPDPFGRTGLQGVSCDFFHGLWHVSAISIGPVYDNSLVCSQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MERKEKEALYSTIQGFVGKWWNGSDLYPDPFGRTGLQGVSCDFFHGLWHVSAISIGPVYDNSLVCSQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	269	2.2.26 [Sep-21-2011]
Q5PP26	424	Piriformospora indica-ins	no	no	0.988	0.627	0.475	2e-63
Q42371	976	LRR receptor-like serine/	no	no	0.631	0.174	0.360	2e-19
Q9C9H7	847	Receptor-like protein 12	no	no	0.617	0.195	0.369	1e-18
Q9LHP4	1141	Receptor-like protein kin	no	no	0.602	0.141	0.347	2e-18
Q9LP24	1120	Probable leucine-rich rep	no	no	0.602	0.144	0.376	4e-18
C0LGV1	1135	LRR receptor-like serine/	no	no	0.594	0.140	0.347	5e-18
Q8VZG8	1045	Probable LRR receptor-lik	no	no	0.539	0.138	0.385	8e-18
C0LGF5	1072	Probable LRR receptor-lik	no	no	0.609	0.152	0.363	1e-17
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.539	0.116	0.371	3e-17
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.583	0.125	0.389	3e-17

>sp|Q5PP26|PII2_ARATH Piriformospora indica-insensitive protein 2 OS=Arabidopsis thaliana GN=PII-2 PE=2 SV=1

 Score =  242 bits (618), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 134/282 (47%), Positives = 178/282 (63%), Gaps = 16/282 (5%)

Query: 1   MERKEKEALYSTIQGFVGKWWNGSDLYPDPFGRTGLQGVSCDFFHGLWHVSAISIGPVYD 60
           M+++E+EALYS IQGFVG  WNGS LYPDP G T +QGVSCD ++ LW+V+ +S+G +Y+
Sbjct: 36  MDKREREALYSAIQGFVGDSWNGSALYPDPCGWTPIQGVSCDIYNDLWYVTDLSLGLIYE 95

Query: 61  NSLVCSQCKIFKPPL---------------QSPIEIPSSN-WQKLANSLDSLEFGSNPRL 104
           NSL CS     +P L                SP+ I     W   A++L+SLEF SNP L
Sbjct: 96  NSLPCSSSLQIRPELFELKHLRSLSFFNCFISPMVIAKEELWTNFASNLESLEFRSNPGL 155

Query: 105 IGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLT 164
           IG +P +I  L  L+SLV+LE G +G+LP     L  L+RL  AGN   G IP    GL 
Sbjct: 156 IGELPETIGNLTKLKSLVVLENGFSGELPASICNLKRLKRLVFAGNSFAGMIPNCFKGLK 215

Query: 165 KLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNF 224
           +LLI DLSRN+ SG++  + G L  LLKLDLS N L+  +P+E+G L N+T LDLR+N F
Sbjct: 216 ELLILDLSRNSFSGTLPTSFGDLVSLLKLDLSNNLLEGNLPQELGFLKNLTLLDLRNNRF 275

Query: 225 LGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEI 266
            GGL  +IE + SL E+V+SNNP+    + G  W  + NL +
Sbjct: 276 SGGLSKNIENIQSLTELVLSNNPMGEEDMVGTNWGKMSNLVV 317

Required for growth promotion and enhanced seed production mediated by the endophytic fungus Piriformospora indica.
Arabidopsis thaliana (taxid: 3702)

>sp|Q42371|ERECT_ARATH LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1

 Score = 96.3 bits (238), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/172 (36%), Positives = 100/172 (58%), Gaps = 2/172 (1%)

Query: 79  IEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSK 138
           +E P  +      +L+SL    N +  GTIP +   L+++  L L    + G +P+E S+
Sbjct: 367 LEGPIPDHLSSCTNLNSLNVHGN-KFSGTIPRAFQKLESMTYLNLSSNNIKGPIPVELSR 425

Query: 139 LVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYN 198
           + NL  L L+ N+ING IP+S+G L  LL  +LSRN+++G +    G L  ++++DLS N
Sbjct: 426 IGNLDTLDLSNNKINGIIPSSLGDLEHLLKMNLSRNHITGVVPGDFGNLRSIMEIDLSNN 485

Query: 199 NLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFG 250
           ++   IP+E+  L N+  L L +NN  G  VGS+   +SL  + VS+N + G
Sbjct: 486 DISGPIPEELNQLQNIILLRLENNNLTGN-VGSLANCLSLTVLNVSHNNLVG 536

Receptor kinase that, together with ERL1 and ERL2, regulates aerial architecture, including inflorescence (e.g. shoot apical meristem-originating organ shape, elongation of the internode and pedicels, and adaxial-abaxial polarity), and stomatal patterning (e.g. density and clustering), probably by tuning cell division and expansion. Modulates plant transpiration efficiency by controlling stomatal density, leaf photosynthetic capacity, epidermal cell expansion, mesophyll cell proliferation and cell-cell contact. Probable major trait regulating canalization (maintenance of phenotype despite varying environment) in many aspect of the plant physiology (e.g. plant morphology, light-dependent leaves number, branch number, flowering time, phytate and mineral concentrations) by transducing microenvironmental variation into phenotypic differentiation (ecological amplifier). May maintain development integrity in heat stress conditions. Regulates cell wall composition and structure. Confers resistance to the pathogenic bacteria Ralstonia solanacearum and to the necrotrophic fungi Plectosphaerella cucumerina and Pythium irregulare, and required for callose deposition upon infection. Resistance to P.cucumerina seems cell wall-mediated.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score = 93.6 bits (231), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/173 (36%), Positives = 92/173 (53%), Gaps = 7/173 (4%)

Query: 80  EIPSS--NWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPS 137
           EIPSS  N  +L N    LE  SN RL+G IP SI  LK L++L L    L G++P    
Sbjct: 173 EIPSSLGNLSRLVN----LELFSN-RLVGKIPDSIGDLKQLRNLSLASNNLIGEIPSSLG 227

Query: 138 KLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSY 197
            L NL  L L  NQ+ G++PASIG L +L +     N+LSG++ ++   L +L    LS 
Sbjct: 228 NLSNLVHLVLTHNQLVGEVPASIGNLIELRVMSFENNSLSGNIPISFANLTKLSIFVLSS 287

Query: 198 NNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFG 250
           NN     P ++   HN+ + D+  N+F G    S+  + SL+ + +  N   G
Sbjct: 288 NNFTSTFPFDMSIFHNLEYFDVSYNSFSGPFPKSLLLIPSLESIYLQENQFTG 340

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score = 92.8 bits (229), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 92/164 (56%), Gaps = 2/164 (1%)

Query: 90  ANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAG 149
              L +L+   N  L GTIP+ +  L+NL  L+L+   L+G +P E     +L RL L  
Sbjct: 417 CTDLQALDLSRN-SLTGTIPSGLFMLRNLTKLLLISNSLSGFIPQEIGNCSSLVRLRLGF 475

Query: 150 NQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIG 209
           N+I G+IP+ IG L K+   D S N L G +   +G  + L  +DLS N+L+  +P  + 
Sbjct: 476 NRITGEIPSGIGSLKKINFLDFSSNRLHGKVPDEIGSCSELQMIDLSNNSLEGSLPNPVS 535

Query: 210 NLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGL 253
           +L  +  LD+ +N F G +  S+  +VSL ++++S N +F G +
Sbjct: 536 SLSGLQVLDVSANQFSGKIPASLGRLVSLNKLILSKN-LFSGSI 578

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score = 92.0 bits (227), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 64/170 (37%), Positives = 97/170 (57%), Gaps = 8/170 (4%)

Query: 100 SNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPAS 159
           S  +L G+IP+S+  LKNL  L L E  LTG +P E   + ++  LAL+ N++ G IP++
Sbjct: 182 SQNKLTGSIPSSLGNLKNLMVLYLYENYLTGVIPPELGNMESMTDLALSQNKLTGSIPST 241

Query: 160 IGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDL 219
           +G L  L++  L  N L+G +   +G +  +  L LS N L   IP  +GNL N+T L L
Sbjct: 242 LGNLKNLMVLYLYENYLTGVIPPEIGNMESMTNLALSQNKLTGSIPSSLGNLKNLTLLSL 301

Query: 220 RSNNFLGGL---VGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEI 266
             N   GG+   +G+IE M+ L+   +SNN + G   + +   NL+NL I
Sbjct: 302 FQNYLTGGIPPKLGNIESMIDLE---LSNNKLTGSIPSSLG--NLKNLTI 346

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGV1|RCH1_ARATH LRR receptor-like serine/threonine-protein kinase RCH1 OS=Arabidopsis thaliana GN=RCH1 PE=2 SV=1

 Score = 91.7 bits (226), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 89/161 (55%), Gaps = 1/161 (0%)

Query: 90  ANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAG 149
             +L +L+   N  L G++P  +  L+NL  L+L+   ++G +P+E     +L RL L  
Sbjct: 418 CQNLQALDLSQN-YLTGSLPAGLFQLRNLTKLLLISNAISGVIPLEIGNCTSLVRLRLVN 476

Query: 150 NQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIG 209
           N+I G+IP  IG L  L   DLS NNLSG + L +    +L  L+LS N LQ  +P  + 
Sbjct: 477 NRITGEIPKGIGFLQNLSFLDLSENNLSGPVPLEISNCRQLQMLNLSNNTLQGYLPLSLS 536

Query: 210 NLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFG 250
           +L  +  LD+ SN+  G +  S+  ++SL  +++S N   G
Sbjct: 537 SLTKLQVLDVSSNDLTGKIPDSLGHLISLNRLILSKNSFNG 577

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score = 90.9 bits (224), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 57/148 (38%), Positives = 81/148 (54%)

Query: 103 RLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGG 162
           +L+G IP  +  L NL +L L+E  L G +P E  +L  +  +A+  N + G IP+S G 
Sbjct: 153 QLVGEIPPELGDLSNLDTLHLVENKLNGSIPSEIGRLTKVTEIAIYDNLLTGPIPSSFGN 212

Query: 163 LTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSN 222
           LTKL+   L  N+LSGS+   +G L  L +L L  NNL  KIP   GNL NVT L++  N
Sbjct: 213 LTKLVNLYLFINSLSGSIPSEIGNLPNLRELCLDRNNLTGKIPSSFGNLKNVTLLNMFEN 272

Query: 223 NFLGGLVGSIEEMVSLKEMVVSNNPIFG 250
              G +   I  M +L  + +  N + G
Sbjct: 273 QLSGEIPPEIGNMTALDTLSLHTNKLTG 300

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGF5|Y1341_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g34110 OS=Arabidopsis thaliana GN=At1g34110 PE=2 SV=2

 Score = 90.5 bits (223), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/168 (36%), Positives = 92/168 (54%), Gaps = 4/168 (2%)

Query: 92  SLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQ 151
           SL     G N  L G IP  + +LKNL +L     GL+G +P     LVNL+ LAL   +
Sbjct: 188 SLQQFRLGGNTNLGGPIPAQLGFLKNLTTLGFAASGLSGSIPSTFGNLVNLQTLALYDTE 247

Query: 152 INGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNL 211
           I+G IP  +G  ++L    L  N L+GS+   LGKL ++  L L  N+L   IP EI N 
Sbjct: 248 ISGTIPPQLGLCSELRNLYLHMNKLTGSIPKELGKLQKITSLLLWGNSLSGVIPPEISNC 307

Query: 212 HNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWE 259
            ++   D+ +N+  G + G + ++V L+++ +S+N +F G    I WE
Sbjct: 308 SSLVVFDVSANDLTGDIPGDLGKLVWLEQLQLSDN-MFTG---QIPWE 351

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score = 89.0 bits (219), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/148 (37%), Positives = 83/148 (56%)

Query: 103 RLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGG 162
           RL G IP+ +  L  +QSL+L +  L G +P E     +L     A N +NG IPA +G 
Sbjct: 178 RLTGPIPSQLGRLVRVQSLILQDNYLEGPIPAELGNCSDLTVFTAAENMLNGTIPAELGR 237

Query: 163 LTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSN 222
           L  L I +L+ N+L+G +   LG++++L  L L  N LQ  IPK + +L N+  LDL +N
Sbjct: 238 LENLEILNLANNSLTGEIPSQLGEMSQLQYLSLMANQLQGLIPKSLADLGNLQTLDLSAN 297

Query: 223 NFLGGLVGSIEEMVSLKEMVVSNNPIFG 250
           N  G +      M  L ++V++NN + G
Sbjct: 298 NLTGEIPEEFWNMSQLLDLVLANNHLSG 325

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score = 89.0 bits (219), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/159 (38%), Positives = 89/159 (55%), Gaps = 2/159 (1%)

Query: 93  LDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQI 152
           L  L+  SN + +G++PT I  L N+ +L L    L G +P E   L  L  L L  NQ+
Sbjct: 674 LGELKLSSN-KFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNLQALNALNLEENQL 732

Query: 153 NGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLK-LDLSYNNLQEKIPKEIGNL 211
           +G +P++IG L+KL    LSRN L+G + + +G+L  L   LDLSYNN   +IP  I  L
Sbjct: 733 SGPLPSTIGKLSKLFELRLSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTL 792

Query: 212 HNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFG 250
             +  LDL  N  +G + G I +M SL  + +S N + G
Sbjct: 793 PKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEG 831

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	269
255566807	443	serine-threonine protein kinase, plant-t	0.985	0.598	0.554	8e-77
224101663	406	predicted protein [Populus trichocarpa]	0.985	0.652	0.557	2e-75
357443135	499	Piriformospora indica-insensitive protei	0.985	0.531	0.562	3e-75
356496010	432	PREDICTED: piriformospora indica-insensi	0.985	0.613	0.554	4e-74
359473008	446	PREDICTED: piriformospora indica-insensi	0.985	0.594	0.550	4e-73
147815740	584	hypothetical protein VITISV_038921 [Viti	0.985	0.453	0.550	5e-73
356535577	443	PREDICTED: piriformospora indica-insensi	0.985	0.598	0.550	3e-71
356576273	443	PREDICTED: piriformospora indica-insensi	0.985	0.598	0.550	3e-71
356499743	433	PREDICTED: piriformospora indica-insensi	0.985	0.612	0.527	4e-70
356565242	474	PREDICTED: piriformospora indica-insensi	0.981	0.556	0.536	1e-69

>gi|255566807|ref|XP_002524387.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223536348|gb|EEF37998.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  292 bits (748), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 158/285 (55%), Positives = 192/285 (67%), Gaps = 20/285 (7%)

Query: 1   MERKEKEALYSTIQGFVGKWWNGSDLYPDPFGRTGLQGVSCDFFHGLWHVSAISIGPVYD 60
           ME  E+ ALYS IQGFVG WWNGSDLYPDP G T +QGVSCD F GLW+V+ +SIGP++D
Sbjct: 1   MEDGERAALYSAIQGFVGNWWNGSDLYPDPCGWTPIQGVSCDIFDGLWYVTDLSIGPIHD 60

Query: 61  NSLVCSQCKIFKP-------------------PLQSPIEIPSSNWQKLANSLDSLEFGSN 101
           NS  CS    F+P                   P + PI IP+ NW+KLA +L+ LEF SN
Sbjct: 61  NSFDCSLNAEFRPHLFQLTHIKSLSFFNCFLSPFKHPITIPTKNWEKLAANLEKLEFRSN 120

Query: 102 PRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIG 161
           P LIG +PT+   L  LQSLVLLE GLTG+LP     L NL+RL LAGN  +G+IP S G
Sbjct: 121 PGLIGRVPTTFGGLIKLQSLVLLENGLTGELPSNFGALANLKRLVLAGNWFSGRIPDSFG 180

Query: 162 GLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRS 221
            L++LLI DLSRN LSG +  T G ++ LLKLD S N L+  +P EIG L N+T LDLR+
Sbjct: 181 RLSQLLILDLSRNLLSGPLPSTFGGMSSLLKLDCSNNQLEGNLPVEIGYLKNLTLLDLRN 240

Query: 222 NNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEI 266
           N F GGL  S++EM SL+EM +SNNPI  G L+ I W+ LQNL I
Sbjct: 241 NKFSGGLTKSLQEMFSLEEMALSNNPIH-GDLHAIEWQKLQNLVI 284

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101663|ref|XP_002312373.1| predicted protein [Populus trichocarpa] gi|222852193|gb|EEE89740.1| predicted protein [Populus trichocarpa]

 Score =  288 bits (737), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 159/285 (55%), Positives = 191/285 (67%), Gaps = 20/285 (7%)

Query: 1   MERKEKEALYSTIQGFVGKWWNGSDLYPDPFGRTGLQGVSCDFFHGLWHVSAISIGPVYD 60
           ME  EK ALYS IQGFVG WWNGSDLYPDP G T +QGVSCD F GLW+V+A+SIGP+ D
Sbjct: 22  MEEGEKTALYSAIQGFVGNWWNGSDLYPDPCGWTPVQGVSCDLFDGLWYVTALSIGPILD 81

Query: 61  NSLVCSQCKIFKP-------------------PLQSPIEIPSSNWQKLANSLDSLEFGSN 101
           N L C+    F+P                   P + PI IPS NW+KLA +L++LEF SN
Sbjct: 82  NYLDCAPIVEFRPQLFELKHLKSLTFFSCFVSPHEHPIIIPSKNWEKLAGNLETLEFRSN 141

Query: 102 PRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIG 161
           P LIG +P+S   L  LQSLVLLE GLTG+LP     L  L+RL LA N   G+IP + G
Sbjct: 142 PGLIGKVPSSFGSLIRLQSLVLLENGLTGELPRNVGNLTKLKRLVLAANWFYGRIPDNFG 201

Query: 162 GLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRS 221
           GL +LLI DLSRN LSGS+ LTLG L  LLKLDLS N L   +P  +  + N+T LDLR+
Sbjct: 202 GLNELLILDLSRNLLSGSLPLTLGGLNSLLKLDLSNNQLVGSLPTVMCYMKNLTLLDLRN 261

Query: 222 NNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEI 266
           N F GGL  S++EM SL+EM +SNNPI GG L G+ W +LQNL +
Sbjct: 262 NRFSGGLTKSLQEMYSLEEMALSNNPI-GGDLQGLEWHSLQNLVV 305

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357443135|ref|XP_003591845.1| Piriformospora indica-insensitive protein [Medicago truncatula] gi|355480893|gb|AES62096.1| Piriformospora indica-insensitive protein [Medicago truncatula]

 Score =  287 bits (735), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 161/286 (56%), Positives = 207/286 (72%), Gaps = 21/286 (7%)

Query: 1   MERKEKEALYSTIQGFVGKWWNGSDLYPDPFGRTGLQGVSCDFFHGLWHVSAISIGPVYD 60
           ME+ E+EALYSTIQGFVG  WNGSDLYPDP G T ++GVSCD F+GLW+V+ I+IGP+++
Sbjct: 18  MEKAEQEALYSTIQGFVGNSWNGSDLYPDPCGSTSIEGVSCDIFNGLWYVTVINIGPIHE 77

Query: 61  NSLVCSQCKI-FKP-------------------PLQSPIEIPSSNWQKLANSLDSLEFGS 100
           NSL C+  K+ FKP                   P + P+ IP+ NW+KLA SL+S+EF S
Sbjct: 78  NSLPCANEKLEFKPELFQLKHLKAISFFNCFQSPNKLPVSIPTGNWEKLAESLESIEFRS 137

Query: 101 NPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASI 160
           NP LIG IP++   LKNLQSLVLLE GLTG +P E   LV L+RL L+GN  +G IP   
Sbjct: 138 NPGLIGNIPSTFGVLKNLQSLVLLENGLTGNIPQEIGNLVKLKRLVLSGNNFSGNIPDIF 197

Query: 161 GGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLR 220
           GGL+ LLI DLSRN+LSG++ +TLG+L  +LKLDLS+N L+ K+  E GNL N+T +DLR
Sbjct: 198 GGLSDLLILDLSRNSLSGTLPVTLGRLISVLKLDLSHNFLEGKLLNEFGNLKNLTLMDLR 257

Query: 221 SNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEI 266
           +N    GLV S++EM SL+EMV+SNNP+ GG +  ++WENLQNL I
Sbjct: 258 NNRLCCGLVLSLQEMNSLEEMVLSNNPL-GGDIRTLKWENLQNLVI 302

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496010|ref|XP_003516863.1| PREDICTED: piriformospora indica-insensitive protein 2-like [Glycine max]

 Score =  283 bits (725), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 158/285 (55%), Positives = 201/285 (70%), Gaps = 20/285 (7%)

Query: 1   MERKEKEALYSTIQGFVGKWWNGSDLYPDPFGRTGLQGVSCDFFHGLWHVSAISIGPVYD 60
           ME+ E++ALYSTIQGFVG WWNGSDLYPDP G T +QGVSCD F+G W+V+ ++IGP++D
Sbjct: 1   MEKAERDALYSTIQGFVGDWWNGSDLYPDPCGWTPIQGVSCDLFNGFWYVTVLNIGPIHD 60

Query: 61  NSLVCSQCKIFKPPL-------------------QSPIEIPSSNWQKLANSLDSLEFGSN 101
           NSL C++   F+P L                   +  + IP++NW+KLA SL+SLEF SN
Sbjct: 61  NSLSCAKILEFRPQLFELKHLKALSLFKCFESQHRHQVTIPNANWEKLAGSLESLEFRSN 120

Query: 102 PRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIG 161
             LIG IP+S   LKNLQSLVLLE GLTGK+P +  KL  L+RL LAGN  +G IP    
Sbjct: 121 RGLIGKIPSSFGALKNLQSLVLLENGLTGKIPPDIGKLNKLKRLVLAGNHFSGHIPDIFS 180

Query: 162 GLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRS 221
            L +LLI DLSRN+LSG++ LTLG L  LLKLD+S+N+L+  + KE   L N+T +DLR+
Sbjct: 181 ALGELLILDLSRNSLSGTLPLTLGSLTSLLKLDVSHNHLEGNLLKEFAYLKNLTLMDLRN 240

Query: 222 NNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEI 266
           N F GGL  SI+EM SL+EMV+SNN I GG +  ++WENL NL I
Sbjct: 241 NRFSGGLTLSIQEMYSLEEMVLSNNAI-GGDIRTLKWENLHNLII 284

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473008|ref|XP_002278514.2| PREDICTED: piriformospora indica-insensitive protein 2-like [Vitis vinifera]

 Score =  280 bits (716), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 157/285 (55%), Positives = 197/285 (69%), Gaps = 20/285 (7%)

Query: 1   MERKEKEALYSTIQGFVGKWWNGSDLYPDPFGRTGLQGVSCDFFHGLWHVSAISIGPVYD 60
           ME+ E+EALYSTIQGFVG WWNGSDLYPDP G T +QGVSCD + G W+V+A++IGPV D
Sbjct: 1   MEKTEQEALYSTIQGFVGTWWNGSDLYPDPCGWTPIQGVSCDLYDGFWYVTALNIGPVQD 60

Query: 61  NSLVCSQCKIFK-------------------PPLQSPIEIPSSNWQKLANSLDSLEFGSN 101
           NSL C+    FK                    P + P+ IP++ W KLA SL+SLEF SN
Sbjct: 61  NSLDCAHNVEFKLHLFELKHLKTLSFLNCFISPRKHPVTIPANIWYKLAGSLESLEFRSN 120

Query: 102 PRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIG 161
           P L+G +PT    L+ LQSLVLLE GL+G LP     LV+LRRL +AGN+  G IP + G
Sbjct: 121 PGLVGQVPTGFGDLRKLQSLVLLENGLSGNLPTIIGNLVSLRRLVIAGNRFTGHIPDNFG 180

Query: 162 GLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRS 221
           GL +LLI DLSRN+LSG +  + G L+ LLKLDLS N L+  +P E+GN+ N+T LDLR+
Sbjct: 181 GLGELLILDLSRNSLSGPLPTSFGGLSSLLKLDLSNNQLEGDLPSELGNMKNLTLLDLRN 240

Query: 222 NNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEI 266
           N F GGL  S++EM SL++M +SNNPI GG L  + W+NLQNL I
Sbjct: 241 NKFSGGLTQSLQEMASLEDMALSNNPI-GGDLLSLEWQNLQNLVI 284

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147815740|emb|CAN74874.1| hypothetical protein VITISV_038921 [Vitis vinifera]

 Score =  280 bits (716), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 157/285 (55%), Positives = 197/285 (69%), Gaps = 20/285 (7%)

Query: 1   MERKEKEALYSTIQGFVGKWWNGSDLYPDPFGRTGLQGVSCDFFHGLWHVSAISIGPVYD 60
           ME+ E+EALYSTIQGFVG WWNGSDLYPDP G T +QGVSCD + G W+V+A++IGPV D
Sbjct: 38  MEKTEQEALYSTIQGFVGTWWNGSDLYPDPCGWTPIQGVSCDLYDGFWYVTALNIGPVQD 97

Query: 61  NSLVCSQCKIFK-------------------PPLQSPIEIPSSNWQKLANSLDSLEFGSN 101
           NSL C+    FK                    P + P+ IP++ W KLA SL+SLEF SN
Sbjct: 98  NSLDCAHNVEFKLHLFELKHLKTLSFLNCFISPRKHPVTIPANIWYKLAGSLESLEFRSN 157

Query: 102 PRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIG 161
           P L+G +PT    L+ LQSLVLLE GL+G LP     LV+LRRL +AGN+  G IP + G
Sbjct: 158 PGLVGQVPTGFGDLRKLQSLVLLENGLSGNLPTIIGNLVSLRRLVIAGNRFTGHIPDNFG 217

Query: 162 GLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRS 221
           GL +LLI DLSRN+LSG +  + G L+ LLKLDLS N L+  +P E+GN+ N+T LDLR+
Sbjct: 218 GLGELLILDLSRNSLSGPLPTSFGGLSSLLKLDLSNNQLEGDLPSELGNMKNLTLLDLRN 277

Query: 222 NNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEI 266
           N F GGL  S++EM SL++M +SNNPI GG L  + W+NLQNL I
Sbjct: 278 NKFSGGLTQSLQEMASLEDMALSNNPI-GGDLLSLEWQNLQNLVI 321

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535577|ref|XP_003536321.1| PREDICTED: piriformospora indica-insensitive protein 2-like [Glycine max]

 Score =  274 bits (700), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 157/285 (55%), Positives = 197/285 (69%), Gaps = 20/285 (7%)

Query: 1   MERKEKEALYSTIQGFVGKWWNGSDLYPDPFGRTGLQGVSCDFFHGLWHVSAISIGPVYD 60
           ME+ E+EALYSTIQGFVG  WNGSDLYPDP G T +QGVSCD F G W+V+A++IGPV+D
Sbjct: 1   MEKAEQEALYSTIQGFVGDSWNGSDLYPDPCGWTPIQGVSCDLFDGFWYVTALNIGPVHD 60

Query: 61  NSLVCSQCKIFKPPL---------------QS----PIEIPSSNWQKLANSLDSLEFGSN 101
           NSL C+Q   F+  L               QS    P  IP+ NWQKLA SL+SLEF SN
Sbjct: 61  NSLSCAQELEFRRELFELKHLKALSFFNCFQSQDMFPATIPTGNWQKLAGSLESLEFRSN 120

Query: 102 PRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIG 161
           P LIG IP+S   LKNLQSLV+LE  +TG++P     L+ L++L LAGN + G IP    
Sbjct: 121 PGLIGNIPSSFSALKNLQSLVILENSVTGEIPSSIGNLIKLKKLVLAGNYLTGSIPDVFD 180

Query: 162 GLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRS 221
           GL +LLIFDLS N+LSGS+ LTLG L   LKLD+SYN+L+  +     NL  +T +DLR+
Sbjct: 181 GLNELLIFDLSSNSLSGSLPLTLGSLTSALKLDVSYNHLEGNLLNAFANLKYLTLMDLRN 240

Query: 222 NNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEI 266
           N F GGL  S++EM SL+E+V+SNNP+ GG +  ++WENL NL I
Sbjct: 241 NRFTGGLTLSLQEMSSLEELVLSNNPL-GGDIRFLKWENLNNLAI 284

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576273|ref|XP_003556257.1| PREDICTED: piriformospora indica-insensitive protein 2-like [Glycine max]

 Score =  274 bits (700), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 157/285 (55%), Positives = 200/285 (70%), Gaps = 20/285 (7%)

Query: 1   MERKEKEALYSTIQGFVGKWWNGSDLYPDPFGRTGLQGVSCDFFHGLWHVSAISIGPVYD 60
           ME+ E+EALYSTIQGFVG  WNGSDLYPDP G T +QGVSCD F G W+V+A++IGPV+D
Sbjct: 1   MEKAEQEALYSTIQGFVGDSWNGSDLYPDPCGWTPIQGVSCDLFDGFWYVTALNIGPVHD 60

Query: 61  NSLVCSQCKIFKPPL---------------QS----PIEIPSSNWQKLANSLDSLEFGSN 101
           NSL C+Q   F+  L               QS    P  IP+ NWQKLA SL+SLEF SN
Sbjct: 61  NSLSCAQDLEFRQHLFELKHLKSLSFFNCSQSQYMFPATIPTGNWQKLAGSLESLEFRSN 120

Query: 102 PRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIG 161
           P LIG IP+S   LKNLQSLV+LE  +TG++P     L+ L++L LAGN + G+IP    
Sbjct: 121 PGLIGNIPSSFGVLKNLQSLVILENSVTGEIPSSIGNLIKLKKLVLAGNYLTGRIPDVFD 180

Query: 162 GLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRS 221
           GL +LLIFDLS N+LSGS+ LTLG L   LKLD+S N+L+  +  +  NL N+T +DLR+
Sbjct: 181 GLNELLIFDLSSNSLSGSLPLTLGSLTSALKLDVSNNHLEGNLLNQFANLKNLTLMDLRN 240

Query: 222 NNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEI 266
           N F GGL  S++EM SL+E+V+SNNP+ GG +  ++WENL+NL I
Sbjct: 241 NRFTGGLTLSLQEMSSLEELVLSNNPL-GGDVRFLKWENLKNLAI 284

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499743|ref|XP_003518696.1| PREDICTED: piriformospora indica-insensitive protein 2-like [Glycine max]

 Score =  270 bits (691), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 151/286 (52%), Positives = 199/286 (69%), Gaps = 21/286 (7%)

Query: 1   MERKEKEALYSTIQGFVGKWWNGSDLYPDPFGRTGLQGVSCDFFHGLWHVSAISIGPVYD 60
           ME+ E++ALYSTIQGFVG WWNGSDLYPDP G T +QGVSCD F+G W+V+ ++IGP++D
Sbjct: 1   MEKAERDALYSTIQGFVGNWWNGSDLYPDPCGWTPIQGVSCDLFNGFWYVTVLNIGPIHD 60

Query: 61  NSLVCSQCKIFKPPL--------------------QSPIEIPSSNWQKLANSLDSLEFGS 100
           NSL C++   F+P L                         IP+++W+KLA SL+SLE+ S
Sbjct: 61  NSLSCAKNLEFRPQLFELKHLKALSLFKCFESQHKHHQATIPNAHWEKLAGSLESLEYRS 120

Query: 101 NPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASI 160
           N  LIG IP+S   LKNLQSLV+LE GLTG++P +   L  L+RL LAGN  +G IP   
Sbjct: 121 NRGLIGKIPSSFGALKNLQSLVVLENGLTGEIPPDIGNLNKLKRLVLAGNYFSGHIPDIF 180

Query: 161 GGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLR 220
             L+ LLI DLSRN+LSG++  TLG L  LLKLD+S+N+L+  + KE+ +L N+T +DLR
Sbjct: 181 SALSDLLILDLSRNSLSGTLPSTLGSLTSLLKLDVSHNHLEGNLLKELADLKNLTLMDLR 240

Query: 221 SNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEI 266
           +N F GGL  SI++M SL+EMV+SNN I GG +  ++WENL NL I
Sbjct: 241 NNRFSGGLTLSIQDMYSLEEMVLSNNGI-GGDIRTLKWENLHNLVI 285

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356565242|ref|XP_003550851.1| PREDICTED: piriformospora indica-insensitive protein 2-like [Glycine max]

 Score =  268 bits (686), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 153/285 (53%), Positives = 200/285 (70%), Gaps = 21/285 (7%)

Query: 1   MERKEKEALYSTIQGFVGKWWNGSDLYPDPFGRTGLQGVSCDFFH-GLWHVSAISIGPVY 59
           M+ KEKE +YS IQG VGKWWNGS LYPDP GRT +QGVSC+ +  G W+V+ ++ GPV+
Sbjct: 35  MKNKEKEVIYSVIQGLVGKWWNGSYLYPDPCGRTPIQGVSCEQYDDGFWYVTTVNFGPVF 94

Query: 60  DNSLVC-------------------SQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGS 100
           DNSL C                   S    F  P ++P+++P SNW+K ++SL+SL   S
Sbjct: 95  DNSLNCNHEAQFPQQLFNLKHLKVLSLSTCFLSPTKNPVKLPLSNWEKFSHSLESLTLRS 154

Query: 101 NPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASI 160
           NP L+GTIP++I  LK LQSLVLLE GLTG+LP+    LV LR+L L GN + GQ+PA+ 
Sbjct: 155 NPGLVGTIPSAIGSLKKLQSLVLLENGLTGELPLSIGNLVKLRQLVLQGNNLEGQVPANY 214

Query: 161 GGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLR 220
           G L++LLIFD SRNNLSG +  TLG L  LLKLDLS N L+ ++P+E+G L N+T LD+ 
Sbjct: 215 GWLSELLIFDASRNNLSGVLPSTLGLLDSLLKLDLSNNMLEGELPRELGRLKNLTLLDIS 274

Query: 221 SNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLE 265
            +   GGLV +I+E+VSLK +V+SNNPI GG L G++WEN QN+E
Sbjct: 275 HSKLRGGLVRTIKELVSLKHLVLSNNPI-GGDLLGVKWENFQNIE 318

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	269
TAIR|locus:2102330	475	AT3G25670 [Arabidopsis thalian	0.988	0.56	0.469	2.4e-60
TAIR|locus:2031880	424	AT1G13230 [Arabidopsis thalian	0.988	0.627	0.446	2.5e-56
TAIR|locus:2012433	432	AT1G68780 [Arabidopsis thalian	0.747	0.465	0.463	6.1e-39
TAIR|locus:2052367	462	RLP29 "receptor like protein 2	0.918	0.534	0.304	3.1e-19
TAIR|locus:2011339	1120	AT1G35710 [Arabidopsis thalian	0.628	0.150	0.353	5.1e-19
TAIR|locus:2005507	976	ER "ERECTA" [Arabidopsis thali	0.631	0.174	0.337	2.3e-18
TAIR|locus:2825384	847	RLP12 "AT1G71400" [Arabidopsis	0.617	0.195	0.352	2.4e-18
TAIR|locus:2154344	1135	AT5G48940 [Arabidopsis thalian	0.646	0.153	0.318	4.7e-18
TAIR|locus:2085949	1141	AT3G24240 [Arabidopsis thalian	0.591	0.139	0.329	4.8e-18
TAIR|locus:2156349	1252	GSO2 "GASSHO 2" [Arabidopsis t	0.795	0.170	0.318	8.8e-18

TAIR|locus:2102330 AT3G25670 [Arabidopsis thaliana (taxid:3702)]

 Score = 618 (222.6 bits), Expect = 2.4e-60, P = 2.4e-60
 Identities = 132/281 (46%), Positives = 172/281 (61%)

Query:     1 MERKEKEALYSTIQGFVGKWWNGSDLYPDPFGRTGLQGVSCDFFHGLWHVSAISIGPVYD 60
             ME+ E+EALYS IQGFVG  WNGSDLYPDP G T +QGVSCD +  LW+V+ +++G V++
Sbjct:    33 MEKTEQEALYSAIQGFVGDSWNGSDLYPDPCGWTPIQGVSCDLYGDLWYVTDLTLGLVHE 92

Query:    61 NSLVCSQCKIFKPPL---------------QSPIEIPSSNWQKLANSLDSLEFGSNPRLI 105
             NSL C+     KP L                SPI IP  +W  LA++L+SLEF SNP LI
Sbjct:    93 NSLSCATSLEIKPQLFKLKHLKSLTFFNCFTSPIRIPKEDWINLASNLESLEFRSNPGLI 152

Query:   106 GTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTK 165
             G +P +I  L  L+SLV+LE G  GKLP     L  L+RL LAGN   G IP    G   
Sbjct:   153 GELPETIGSLTKLKSLVVLENGFNGKLPTRICNLTRLKRLVLAGNLFTGTIPDCFNGFKD 212

Query:   166 LLIFDLSRNNLSGSMXXXXXXXXXXXXXXXSYNNLQEKIPKEIGNLHNVTFLDLRSNNFL 225
             LLI D+SRN+ SG +               S N L+ ++P+EIG L N+T LDLR+N   
Sbjct:   213 LLILDMSRNSFSGILPLSVGEMVSLLKLDLSNNQLEGRLPQEIGFLKNLTLLDLRNNRIS 272

Query:   226 GGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEI 266
             GGL  +IE++ SL ++V+S NP+    + GI+WEN+ NL I
Sbjct:   273 GGLFENIEKIPSLTDLVLSGNPMGSDDMMGIKWENMGNLVI 313

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2031880 AT1G13230 [Arabidopsis thaliana (taxid:3702)]

 Score = 580 (209.2 bits), Expect = 2.5e-56, P = 2.5e-56
 Identities = 126/282 (44%), Positives = 169/282 (59%)

Query:     1 MERKEKEALYSTIQGFVGKWWNGSDLYPDPFGRTGLQGVSCDFFHGLWHVSAISIGPVYD 60
             M+++E+EALYS IQGFVG  WNGS LYPDP G T +QGVSCD ++ LW+V+ +S+G +Y+
Sbjct:    36 MDKREREALYSAIQGFVGDSWNGSALYPDPCGWTPIQGVSCDIYNDLWYVTDLSLGLIYE 95

Query:    61 NSLVCSQCKIFKPPLQ---------------SPIEIPSSN-WQKLANSLDSLEFGSNPRL 104
             NSL CS     +P L                SP+ I     W   A++L+SLEF SNP L
Sbjct:    96 NSLPCSSSLQIRPELFELKHLRSLSFFNCFISPMVIAKEELWTNFASNLESLEFRSNPGL 155

Query:   105 IGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLT 164
             IG +P +I  L  L+SLV+LE G +G+LP     L  L+RL  AGN   G IP    GL 
Sbjct:   156 IGELPETIGNLTKLKSLVVLENGFSGELPASICNLKRLKRLVFAGNSFAGMIPNCFKGLK 215

Query:   165 KLLIFDLSRNNLSGSMXXXXXXXXXXXXXXXSYNNLQEKIPKEIGNLHNVTFLDLRSNNF 224
             +LLI DLSRN+ SG++               S N L+  +P+E+G L N+T LDLR+N F
Sbjct:   216 ELLILDLSRNSFSGTLPTSFGDLVSLLKLDLSNNLLEGNLPQELGFLKNLTLLDLRNNRF 275

Query:   225 LGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEI 266
              GGL  +IE + SL E+V+SNNP+    + G  W  + NL +
Sbjct:   276 SGGLSKNIENIQSLTELVLSNNPMGEEDMVGTNWGKMSNLVV 317

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0009507 "chloroplast" evidence=IDA

GO:0009610 "response to symbiotic fungus" evidence=IMP

GO:0044403 "symbiosis, encompassing mutualism through parasitism" evidence=IMP

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2012433 AT1G68780 [Arabidopsis thaliana (taxid:3702)]

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 95/205 (46%), Positives = 124/205 (60%)

Query:    62 SLVCSQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSL 121
             SL    C  F  P +    I    W  L+ SL+ LE  SNP LIG +P+ I  L NLQSL
Sbjct:   120 SLSLFNC--FTTPNRYLASISDEKWLDLSKSLERLEIRSNPGLIGELPSVITNLTNLQSL 177

Query:   122 VLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMX 181
             V+LE  LTG LP+  +KL  LRRL L+GN+  G+IP  + GLT LLI D+SRN LSG++ 
Sbjct:   178 VVLENKLTGPLPVNLAKLTRLRRLVLSGNRFTGRIP-EVYGLTGLLILDVSRNFLSGALP 236

Query:   182 XXXXXXXXXXXXXXSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEM 241
                           S N L+ K+P+E+ +L N+T LDLR+N   GGL   I+EM SL E+
Sbjct:   237 LSVGGLYSLLKLDLSNNYLEGKLPRELESLKNLTLLDLRNNRLSGGLSKEIQEMTSLVEL 296

Query:   242 VVSNNPIFGGGLNGIRWENLQNLEI 266
             V+SNN +  G L GI+W NL+NL +
Sbjct:   297 VLSNNRL-AGDLTGIKWRNLKNLVV 320

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2052367 RLP29 "receptor like protein 29" [Arabidopsis thaliana (taxid:3702)]

 Score = 236 (88.1 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 81/266 (30%), Positives = 122/266 (45%)

Query:     1 MERKEKEALYSTIQGFVG-KWWNGSDLYPDPFGR-TGLQGVSCDFFHG-LWHVSAISIGP 57
             M   E E L+  ++     + W  S  +P+P    +   G+ C      L HVS +  G 
Sbjct:    35 MPPSESETLFKIMESMSSDQQWRQS--HPNPCAPGSSWPGIECKTGPDHLSHVSRLDFGS 92

Query:    58 VYDNSLVCSQC---KIFKPP-LQSPI------EIPSSNWQ--KLA--NSLDSLEFGSNPR 103
               + S   S      IF  P LQS          P++     KL   +SL  L   SNP 
Sbjct:    93 APNPSCKSSASFPSSIFTLPFLQSVFFFNCFTHFPTTIMFPIKLIPNSSLQQLSLRSNPS 152

Query:   104 LIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGL 163
             L G IP  I  LK+LQ L L +  LTG +P     L +L  L L+ N++ G+IP  +G L
Sbjct:   153 LSGQIPPRISSLKSLQILTLSQNRLTGDIPPAIFSLKSLVHLDLSYNKLTGKIPLQLGNL 212

Query:   164 TKLLIFDLSRNNLSGSMXXXXXXXXXXXXXXXSYNNLQEKIPKEIGNLHNVTFLDLRSNN 223
               L+  DLS N+L+G++               S N+L  +IP+ +  L +++F+ L +N 
Sbjct:   213 NNLVGLDLSYNSLTGTIPPTISQLGMLQKLDLSSNSLFGRIPEGVEKLRSLSFMALSNNK 272

Query:   224 FLGGLVGSIEEMVSLKEMVVSNNPIF 249
               G     I  + SL+  ++ NNP+F
Sbjct:   273 LKGAFPKGISNLQSLQYFIMDNNPMF 298

GO:0005886 "plasma membrane" evidence=ISM

GO:0031225 "anchored to membrane" evidence=TAS

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2011339 AT1G35710 [Arabidopsis thaliana (taxid:3702)]

 Score = 241 (89.9 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 63/178 (35%), Positives = 94/178 (52%)

Query:    92 SLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQ 151
             S+  L    N +L G+IP+S+  LKNL  L L E  LTG +P E   + ++  LAL+ N+
Sbjct:   175 SMTDLALSQN-KLTGSIPSSLGNLKNLMVLYLYENYLTGVIPPELGNMESMTDLALSQNK 233

Query:   152 INGQIPASIGGLTKLLIFDLSRNNLSGSMXXXXXXXXXXXXXXXSYNNLQEKIPKEIGNL 211
             + G IP+++G L  L++  L  N L+G +               S N L   IP  +GNL
Sbjct:   234 LTGSIPSTLGNLKNLMVLYLYENYLTGVIPPEIGNMESMTNLALSQNKLTGSIPSSLGNL 293

Query:   212 HNVTFLDLRSNNFLGGL---VGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEI 266
              N+T L L  N   GG+   +G+IE M+ L+   +SNN + G   + +   NL+NL I
Sbjct:   294 KNLTLLSLFQNYLTGGIPPKLGNIESMIDLE---LSNNKLTGSIPSSLG--NLKNLTI 346

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

TAIR|locus:2005507 ER "ERECTA" [Arabidopsis thaliana (taxid:3702)]

 Score = 234 (87.4 bits), Expect = 2.3e-18, P = 2.3e-18
 Identities = 58/172 (33%), Positives = 92/172 (53%)

Query:    79 IEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSK 138
             +E P  +      +L+SL    N +  GTIP +   L+++  L L    + G +P+E S+
Sbjct:   367 LEGPIPDHLSSCTNLNSLNVHGN-KFSGTIPRAFQKLESMTYLNLSSNNIKGPIPVELSR 425

Query:   139 LVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMXXXXXXXXXXXXXXXSYN 198
             + NL  L L+ N+ING IP+S+G L  LL  +LSRN+++G +               S N
Sbjct:   426 IGNLDTLDLSNNKINGIIPSSLGDLEHLLKMNLSRNHITGVVPGDFGNLRSIMEIDLSNN 485

Query:   199 NLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFG 250
             ++   IP+E+  L N+  L L +NN  G  VGS+   +SL  + VS+N + G
Sbjct:   486 DISGPIPEELNQLQNIILLRLENNNLTGN-VGSLANCLSLTVLNVSHNNLVG 536

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0048281 "inflorescence morphogenesis" evidence=IMP

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IMP

GO:0010103 "stomatal complex morphogenesis" evidence=RCA;IMP

GO:0001558 "regulation of cell growth" evidence=IGI;IMP

GO:0009965 "leaf morphogenesis" evidence=RCA;IMP

GO:0010148 "transpiration" evidence=IMP

GO:0030155 "regulation of cell adhesion" evidence=IMP

GO:0051302 "regulation of cell division" evidence=IGI;IMP

GO:0009664 "plant-type cell wall organization" evidence=IMP

GO:0008356 "asymmetric cell division" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0031540 "regulation of anthocyanin biosynthetic process" evidence=RCA

GO:0019199 "transmembrane receptor protein kinase activity" evidence=ISS

GO:2000027 "regulation of organ morphogenesis" evidence=IMP

TAIR|locus:2825384 RLP12 "AT1G71400" [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 2.4e-18, P = 2.4e-18
 Identities = 61/173 (35%), Positives = 86/173 (49%)

Query:    80 EIPSS--NWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPS 137
             EIPSS  N  +L N    LE  SN RL+G IP SI  LK L++L L    L G++P    
Sbjct:   173 EIPSSLGNLSRLVN----LELFSN-RLVGKIPDSIGDLKQLRNLSLASNNLIGEIPSSLG 227

Query:   138 KLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMXXXXXXXXXXXXXXXSY 197
              L NL  L L  NQ+ G++PASIG L +L +     N+LSG++               S 
Sbjct:   228 NLSNLVHLVLTHNQLVGEVPASIGNLIELRVMSFENNSLSGNIPISFANLTKLSIFVLSS 287

Query:   198 NNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFG 250
             NN     P ++   HN+ + D+  N+F G    S+  + SL+ + +  N   G
Sbjct:   288 NNFTSTFPFDMSIFHNLEYFDVSYNSFSGPFPKSLLLIPSLESIYLQENQFTG 340

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2154344 AT5G48940 [Arabidopsis thaliana (taxid:3702)]

 Score = 232 (86.7 bits), Expect = 4.7e-18, P = 4.7e-18
 Identities = 56/176 (31%), Positives = 90/176 (51%)

Query:    92 SLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQ 151
             +L +L+   N  L G++P  +  L+NL  L+L+   ++G +P+E     +L RL L  N+
Sbjct:   420 NLQALDLSQN-YLTGSLPAGLFQLRNLTKLLLISNAISGVIPLEIGNCTSLVRLRLVNNR 478

Query:   152 INGQIPASIGGLTKLLIFDLSRNNLSGSMXXXXXXXXXXXXXXXSYNNLQEKIPKEIGNL 211
             I G+IP  IG L  L   DLS NNLSG +               S N LQ  +P  + +L
Sbjct:   479 ITGEIPKGIGFLQNLSFLDLSENNLSGPVPLEISNCRQLQMLNLSNNTLQGYLPLSLSSL 538

Query:   212 HNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGI-RWENLQNLEI 266
               +  LD+ SN+  G +  S+  ++SL  +++S N   G   + +    NLQ L++
Sbjct:   539 TKLQVLDVSSNDLTGKIPDSLGHLISLNRLILSKNSFNGEIPSSLGHCTNLQLLDL 594

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2085949 AT3G24240 [Arabidopsis thaliana (taxid:3702)]

 Score = 232 (86.7 bits), Expect = 4.8e-18, P = 4.8e-18
 Identities = 53/161 (32%), Positives = 85/161 (52%)

Query:    93 LDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQI 152
             L +L+   N  L GTIP+ +  L+NL  L+L+   L+G +P E     +L RL L  N+I
Sbjct:   420 LQALDLSRNS-LTGTIPSGLFMLRNLTKLLLISNSLSGFIPQEIGNCSSLVRLRLGFNRI 478

Query:   153 NGQIPASIGGLTKLLIFDLSRNNLSGSMXXXXXXXXXXXXXXXSYNNLQEKIPKEIGNLH 212
              G+IP+ IG L K+   D S N L G +               S N+L+  +P  + +L 
Sbjct:   479 TGEIPSGIGSLKKINFLDFSSNRLHGKVPDEIGSCSELQMIDLSNNSLEGSLPNPVSSLS 538

Query:   213 NVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGL 253
              +  LD+ +N F G +  S+  +VSL ++++S N +F G +
Sbjct:   539 GLQVLDVSANQFSGKIPASLGRLVSLNKLILSKN-LFSGSI 578

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2156349 GSO2 "GASSHO 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 230 (86.0 bits), Expect = 8.8e-18, P = 8.8e-18
 Identities = 72/226 (31%), Positives = 107/226 (47%)

Query:    32 GRTGLQGVSCDFFHGLWHVSAIS---IGPV---YDN-SLVCSQCKIFKPPLQSPIEIPSS 84
             G TG    S   F+ L H+   S   +GP+     N S       +F   L    +IPS 
Sbjct:    82 GLTGSISPSIGRFNNLIHIDLSSNRLVGPIPTTLSNLSSSLESLHLFSNLLSG--DIPSQ 139

Query:    85 NWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRR 144
                 L N L SL+ G N  L GTIP +   L NLQ L L    LTG +P    +LV L+ 
Sbjct:   140 -LGSLVN-LKSLKLGDN-ELNGTIPETFGNLVNLQMLALASCRLTGLIPSRFGRLVQLQT 196

Query:   145 LALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMXXXXXXXXXXXXXXXSYNNLQEKI 204
             L L  N++ G IPA IG  T L +F  + N L+GS+                 N+   +I
Sbjct:   197 LILQDNELEGPIPAEIGNCTSLALFAAAFNRLNGSLPAELNRLKNLQTLNLGDNSFSGEI 256

Query:   205 PKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFG 250
             P ++G+L ++ +L+L  N   G +   + E+ +L+ + +S+N + G
Sbjct:   257 PSQLGDLVSIQYLNLIGNQLQGLIPKRLTELANLQTLDLSSNNLTG 302

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009553 "embryo sac development" evidence=IMP

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.VIII.2940.1	hypothetical protein (406 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	fgenesh4_pg.C_scaffold_1082000001	hypothetical protein (367 aa)			•						0.501
	gw1.VI.2319.1	hypothetical protein (308 aa)			•						0.468
	grail3.0053020202	SubName- Full=Putative uncharacterized protein; (371 aa)			•						0.460
	gw1.XVIII.384.1	hypothetical protein (300 aa)			•						0.458
	eugene3.162250001	hypothetical protein (262 aa)			•						0.458
	fgenesh4_pg.C_scaffold_243000006	hypothetical protein (350 aa)			•						0.448
	fgenesh4_pg.C_scaffold_20023000001	hypothetical protein (307 aa)			•						0.433
	fgenesh4_pg.C_scaffold_1268000001	hypothetical protein (327 aa)			•						0.420
	eugene3.90370001	hypothetical protein (187 aa)			•						0.419
	fgenesh4_pg.C_scaffold_9298000001	hypothetical protein (238 aa)			•						0.403

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	269
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-21
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-21
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-20
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-18
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-17
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-16
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-16
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-15
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-14
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-13
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-13
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	9e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	5e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-04

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 93.8 bits (233), Expect = 1e-21
 Identities = 65/167 (38%), Positives = 85/167 (50%), Gaps = 2/167 (1%)

Query: 100 SNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPAS 159
           SN  L G IP  I    +L+ L L    L GK+P   + L +L  L LA NQ+ GQIP  
Sbjct: 148 SNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE 207

Query: 160 IGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDL 219
           +G +  L    L  NNLSG +   +G L  L  LDL YNNL   IP  +GNL N+ +L L
Sbjct: 208 LGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFL 267

Query: 220 RSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEI 266
             N   G +  SI  +  L  + +S+N + G     +    LQNLEI
Sbjct: 268 YQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELV--IQLQNLEI 312

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 93.4 bits (232), Expect = 2e-21
 Identities = 63/198 (31%), Positives = 96/198 (48%), Gaps = 25/198 (12%)

Query: 93  LDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQI 152
           L SL+   N  L G IP  +  L+NL+ L L     TGK+P+  + L  L+ L L  N+ 
Sbjct: 286 LISLDLSDN-SLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKF 344

Query: 153 NGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIG--- 209
           +G+IP ++G    L + DLS NNL+G +   L     L KL L  N+L+ +IPK +G   
Sbjct: 345 SGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACR 404

Query: 210 ---------------------NLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPI 248
                                 L  V FLD+ +NN  G +     +M SL+ + ++ N  
Sbjct: 405 SLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKF 464

Query: 249 FGGGLNGIRWENLQNLEI 266
           FGG  +    + L+NL++
Sbjct: 465 FGGLPDSFGSKRLENLDL 482

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 88.4 bits (219), Expect = 8e-20
 Identities = 52/151 (34%), Positives = 81/151 (53%), Gaps = 2/151 (1%)

Query: 100 SNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPAS 159
           SN    G+IP     + NL++L L    L+G++P +     +L+ L L GN + G+IP S
Sbjct: 126 SNNNFTGSIPRG--SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS 183

Query: 160 IGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDL 219
           +  LT L    L+ N L G +   LG++  L  + L YNNL  +IP EIG L ++  LDL
Sbjct: 184 LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDL 243

Query: 220 RSNNFLGGLVGSIEEMVSLKEMVVSNNPIFG 250
             NN  G +  S+  + +L+ + +  N + G
Sbjct: 244 VYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG 274

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 85.3 bits (211), Expect = 1e-18
 Identities = 55/160 (34%), Positives = 89/160 (55%), Gaps = 1/160 (0%)

Query: 92  SLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQ 151
           SL+ L   SN +L+G IP  +  +K+L+ + L    L+G++P E   L +L  L L  N 
Sbjct: 189 SLEFLTLASN-QLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN 247

Query: 152 INGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNL 211
           + G IP+S+G L  L    L +N LSG +  ++  L +L+ LDLS N+L  +IP+ +  L
Sbjct: 248 LTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQL 307

Query: 212 HNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGG 251
            N+  L L SNNF G +  ++  +  L+ + + +N   G 
Sbjct: 308 QNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGE 347

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 81.0 bits (200), Expect = 3e-17
 Identities = 53/137 (38%), Positives = 74/137 (54%), Gaps = 1/137 (0%)

Query: 92  SLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQ 151
           SL+ L+   N  L G IP+S+  LKNLQ L L +  L+G +P     L  L  L L+ N 
Sbjct: 237 SLNHLDLVYN-NLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS 295

Query: 152 INGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNL 211
           ++G+IP  +  L  L I  L  NN +G + + L  L RL  L L  N    +IPK +G  
Sbjct: 296 LSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKH 355

Query: 212 HNVTFLDLRSNNFLGGL 228
           +N+T LDL +NN  G +
Sbjct: 356 NNLTVLDLSTNNLTGEI 372

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 78.7 bits (194), Expect = 2e-16
 Identities = 54/147 (36%), Positives = 77/147 (52%)

Query: 104 LIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGL 163
           L G IP  I  L +L  L L+   LTG +P     L NL+ L L  N+++G IP SI  L
Sbjct: 224 LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSL 283

Query: 164 TKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNN 223
            KL+  DLS N+LSG +   + +L  L  L L  NN   KIP  + +L  +  L L SN 
Sbjct: 284 QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK 343

Query: 224 FLGGLVGSIEEMVSLKEMVVSNNPIFG 250
           F G +  ++ +  +L  + +S N + G
Sbjct: 344 FSGEIPKNLGKHNNLTVLDLSTNNLTG 370

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 77.6 bits (191), Expect = 4e-16
 Identities = 62/173 (35%), Positives = 89/173 (51%), Gaps = 7/173 (4%)

Query: 80  EIPSSNWQKLANSLDSLE--FGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPS 137
            IPSS    L N L +L+  F    +L G IP SI  L+ L SL L +  L+G++P    
Sbjct: 251 PIPSS----LGN-LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI 305

Query: 138 KLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSY 197
           +L NL  L L  N   G+IP ++  L +L +  L  N  SG +   LGK   L  LDLS 
Sbjct: 306 QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLST 365

Query: 198 NNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFG 250
           NNL  +IP+ + +  N+  L L SN+  G +  S+    SL+ + + +N   G
Sbjct: 366 NNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSG 418

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 74.5 bits (183), Expect = 3e-15
 Identities = 40/98 (40%), Positives = 62/98 (63%), Gaps = 2/98 (2%)

Query: 121 LVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSM 180
           L L  +GL G +P + SKL +L+ + L+GN I G IP S+G +T L + DLS N+ +GS+
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 181 LLTLGKLARLLKLDLSYNNLQEKIPKEIGN--LHNVTF 216
             +LG+L  L  L+L+ N+L  ++P  +G   LH  +F
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF 520

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 70.6 bits (173), Expect = 8e-14
 Identities = 52/164 (31%), Positives = 85/164 (51%), Gaps = 9/164 (5%)

Query: 72  KPPLQSPIEIPSSNWQKLAN-------SLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLL 124
           K PL   ++I ++N Q   N       SL  L    N +  G +P S    K L++L L 
Sbjct: 426 KLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARN-KFFGGLPDSFGS-KRLENLDLS 483

Query: 125 EKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTL 184
               +G +P +   L  L +L L+ N+++G+IP  +    KL+  DLS N LSG +  + 
Sbjct: 484 RNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASF 543

Query: 185 GKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGL 228
            ++  L +LDLS N L  +IPK +GN+ ++  +++  N+  G L
Sbjct: 544 SEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSL 587

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 69.5 bits (170), Expect = 2e-13
 Identities = 42/133 (31%), Positives = 73/133 (54%), Gaps = 3/133 (2%)

Query: 120 SLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLT-KLLIFDLSRNNLSG 178
           S+ L  K ++GK+     +L  ++ + L+ NQ++G IP  I   +  L   +LS NN +G
Sbjct: 73  SIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTG 132

Query: 179 SMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSL 238
           S+    G +  L  LDLS N L  +IP +IG+  ++  LDL  N  +G +  S+  + SL
Sbjct: 133 SI--PRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSL 190

Query: 239 KEMVVSNNPIFGG 251
           + + +++N + G 
Sbjct: 191 EFLTLASNQLVGQ 203

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 68.3 bits (167), Expect = 5e-13
 Identities = 48/151 (31%), Positives = 76/151 (50%), Gaps = 1/151 (0%)

Query: 100 SNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPAS 159
           SN  L G I +    + +LQ L L      G LP +      L  L L+ NQ +G +P  
Sbjct: 436 SNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLP-DSFGSKRLENLDLSRNQFSGAVPRK 494

Query: 160 IGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDL 219
           +G L++L+   LS N LSG +   L    +L+ LDLS+N L  +IP     +  ++ LDL
Sbjct: 495 LGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDL 554

Query: 220 RSNNFLGGLVGSIEEMVSLKEMVVSNNPIFG 250
             N   G +  ++  + SL ++ +S+N + G
Sbjct: 555 SQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 66.8 bits (163), Expect = 2e-12
 Identities = 41/116 (35%), Positives = 66/116 (56%), Gaps = 1/116 (0%)

Query: 90  ANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAG 149
           +  L++L+   N +  G +P  +  L  L  L L E  L+G++P E S    L  L L+ 
Sbjct: 474 SKRLENLDLSRN-QFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSH 532

Query: 150 NQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIP 205
           NQ++GQIPAS   +  L   DLS+N LSG +   LG +  L+++++S+N+L   +P
Sbjct: 533 NQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 60.2 bits (146), Expect = 2e-10
 Identities = 40/109 (36%), Positives = 53/109 (48%), Gaps = 8/109 (7%)

Query: 83  SSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNL 142
              W      LD      N  L G IP  I  L++LQS+ L    + G +P     + +L
Sbjct: 415 KGKWFIDGLGLD------NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSL 468

Query: 143 RRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLL 191
             L L+ N  NG IP S+G LT L I +L+ N+LSG +   LG   RLL
Sbjct: 469 EVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG--GRLL 515

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 55.2 bits (133), Expect = 1e-08
 Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 5/113 (4%)

Query: 145 LALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKI 204
           L L    + G IP  I  L  L   +LS N++ G++  +LG +  L  LDLSYN+    I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 205 PKEIGNLHNVTFLDLRSNNFLGGLVGSI-EEMVSLKEMVVSNNPIFGGGLNGI 256
           P+ +G L ++  L+L  N+  G +  ++   ++       ++N     GL GI
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA----GLCGI 531

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 51.0 bits (122), Expect = 3e-07
 Identities = 32/89 (35%), Positives = 52/89 (58%)

Query: 100 SNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPAS 159
           S  +L G IP  +   K L SL L    L+G++P   S++  L +L L+ NQ++G+IP +
Sbjct: 507 SENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKN 566

Query: 160 IGGLTKLLIFDLSRNNLSGSMLLTLGKLA 188
           +G +  L+  ++S N+L GS+  T   LA
Sbjct: 567 LGNVESLVQVNISHNHLHGSLPSTGAFLA 595

Length = 968

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 48.4 bits (115), Expect = 1e-06
 Identities = 50/163 (30%), Positives = 73/163 (44%), Gaps = 28/163 (17%)

Query: 88  KLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLAL 147
            L ++L  L+   N   I ++P+ +  L NL++L L    L+  LP   S L NL  L L
Sbjct: 137 LLKSNLKELDLSDNK--IESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDL 193

Query: 148 AGNQINGQIPASIGGLTKLLIFDLSRN----------------------NLSGSMLLTLG 185
           +GN+I+  +P  I  L+ L   DLS N                      N    +  ++G
Sbjct: 194 SGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIG 252

Query: 186 KLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGL 228
            L+ L  LDLS NN    I   +G+L N+  LDL  N+    L
Sbjct: 253 NLSNLETLDLS-NNQISSISS-LGSLTNLRELDLSGNSLSNAL 293

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.1 bits (100), Expect = 9e-06
 Identities = 23/60 (38%), Positives = 30/60 (50%)

Query: 141 NLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNL 200
           NL+ L L+ N++      +  GL  L + DLS NNL+         L  L  LDLS NNL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 40.7 bits (95), Expect = 5e-04
 Identities = 37/105 (35%), Positives = 53/105 (50%), Gaps = 4/105 (3%)

Query: 104 LIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGL 163
            I  +P  I+ L  L+ L L    +  +L    S L NL  L L+ N++   +P SIG L
Sbjct: 197 KISDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNL 254

Query: 164 TKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEI 208
           + L   DLS N +S   + +LG L  L +LDLS N+L   +P   
Sbjct: 255 SNLETLDLSNNQIS--SISSLGSLTNLRELDLSGNSLSNALPLIA 297

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.1 bits (87), Expect = 5e-04
 Identities = 23/63 (36%), Positives = 27/63 (42%), Gaps = 3/63 (4%)

Query: 162 GLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRS 221
            L  L   DLS N L+         L  L  LDLS NNL    P+    L ++  LDL  
Sbjct: 1   NLKSL---DLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSG 57

Query: 222 NNF 224
           NN 
Sbjct: 58  NNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	269
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.91
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.83
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.82
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.79
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.75
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.73
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.73
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.73
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.72
PLN03150	623	hypothetical protein; Provisional	99.71
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.7
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.65
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.63
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.63
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.58
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.56
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.55
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.54
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.53
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.53
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.51
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.48
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.44
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.41
PLN03150	623	hypothetical protein; Provisional	99.36
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.35
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.32
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.31
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.25
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.21
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.18
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.14
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.99
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.98
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.94
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.77
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.7
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.7
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.69
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.63
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.62
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.58
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.57
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.55
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.52
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.42
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.4
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.36
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.15
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.14
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.13
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.06
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.03
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.99
PRK15386	426	type III secretion protein GogB; Provisional	97.97
PRK15386	426	type III secretion protein GogB; Provisional	97.95
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.92
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.91
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.84
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.83
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.79
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.78
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.77
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.57
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.2
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.87
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.93
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.89
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.78
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.14
KOG0473	326	consensus Leucine-rich repeat protein [Function un	95.02
KOG4308	478	consensus LRR-containing protein [Function unknown	94.88
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.84
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.59
KOG4341	483	consensus F-box protein containing LRR [General fu	93.4
KOG3864	221	consensus Uncharacterized conserved protein [Funct	92.77
KOG4341	483	consensus F-box protein containing LRR [General fu	91.81
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.78
smart00370	26	LRR Leucine-rich repeats, outliers.	91.78
smart00370	26	LRR Leucine-rich repeats, outliers.	90.97
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.97
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	90.76
KOG3864	221	consensus Uncharacterized conserved protein [Funct	90.56
KOG4308	478	consensus LRR-containing protein [Function unknown	89.84

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=7.4e-32  Score=264.42  Aligned_cols=254  Identities=31%  Similarity=0.431  Sum_probs=144.1

Q ss_pred             CHHHHHHHHHHHhcccC-----CCCCCCCCCCCCCCCCCCCceEeecCCCceEEEEEEeCC------CCCCCcccccccc
Q 036300            2 ERKEKEALYSTIQGFVG-----KWWNGSDLYPDPFGRTGLQGVSCDFFHGLWHVSAISIGP------VYDNSLVCSQCKI   70 (269)
Q Consensus         2 ~~~~~~~l~~~~~~~~~-----~~W~~~~~~~~~C~~~~~~gv~C~~~~~~~~v~~l~l~~------~~~~~~~~~~l~~   70 (269)
                      .++|++||++|++++.+     .+|+..   .++|.|.   ||+|+..+   +|+.|++..      +++.....+.+..
T Consensus        27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~---~~~c~w~---gv~c~~~~---~v~~L~L~~~~i~~~~~~~~~~l~~L~~   97 (968)
T PLN00113         27 HAEELELLLSFKSSINDPLKYLSNWNSS---ADVCLWQ---GITCNNSS---RVVSIDLSGKNISGKISSAIFRLPYIQT   97 (968)
T ss_pred             CHHHHHHHHHHHHhCCCCcccCCCCCCC---CCCCcCc---ceecCCCC---cEEEEEecCCCccccCChHHhCCCCCCE
Confidence            46899999999999864     468655   3899998   99998654   899999842      2222223445555


Q ss_pred             cCCCCC-CCcccCchhHHhhcCCccEEEccCCCCceeccC----------------------ccccCCCCCCEEEcccCC
Q 036300           71 FKPPLQ-SPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIP----------------------TSIDYLKNLQSLVLLEKG  127 (269)
Q Consensus        71 ~~~~~~-~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p----------------------~~l~~l~~L~~L~L~~n~  127 (269)
                      +....+ +.|.+|..++..+ ++|++|++++| .+.+.+|                      ..++.+++|++|++++|.
T Consensus        98 L~Ls~n~~~~~ip~~~~~~l-~~L~~L~Ls~n-~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~  175 (968)
T PLN00113         98 INLSNNQLSGPIPDDIFTTS-SSLRYLNLSNN-NFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNV  175 (968)
T ss_pred             EECCCCccCCcCChHHhccC-CCCCEEECcCC-ccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCc
Confidence            554443 3467887776444 66777776666 5555444                      444444444444444444


Q ss_pred             CCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchh
Q 036300          128 LTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKE  207 (269)
Q Consensus       128 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~  207 (269)
                      +.+.+|..++++++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..++.+++|++|++++|++.+.+|..
T Consensus       176 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~  255 (968)
T PLN00113        176 LVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS  255 (968)
T ss_pred             ccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh
Confidence            44444444444444555555444444444444444555555555555554444545555555555555555555445555


Q ss_pred             hcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceec
Q 036300          208 IGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWI  268 (269)
Q Consensus       208 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~  268 (269)
                      ++++++|++|++++|.+++.+|..+..+++|++|++++|.+ .+.+|. .+.++++|+.|+
T Consensus       256 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l-~~~~p~-~~~~l~~L~~L~  314 (968)
T PLN00113        256 LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL-SGEIPE-LVIQLQNLEILH  314 (968)
T ss_pred             HhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCee-ccCCCh-hHcCCCCCcEEE
Confidence            55555555555555555555555555555555555555555 444443 445555555554

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.91  E-value=2.1e-24  Score=211.90  Aligned_cols=187  Identities=33%  Similarity=0.487  Sum_probs=174.2

Q ss_pred             CcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCc
Q 036300           78 PIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIP  157 (269)
Q Consensus        78 ~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p  157 (269)
                      .+.+|..+ ..+ ++|++|++++| .+.+.+|..+.++++|++|++++|.+.+.+|..++++++|++|++++|.+++.+|
T Consensus       153 ~~~~p~~~-~~l-~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p  229 (968)
T PLN00113        153 SGEIPNDI-GSF-SSLKVLDLGGN-VLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIP  229 (968)
T ss_pred             cccCChHH-hcC-CCCCEEECccC-cccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCC
Confidence            35677665 444 89999999999 7889999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCC
Q 036300          158 ASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVS  237 (269)
Q Consensus       158 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  237 (269)
                      ..+..+++|++|++++|.+++.+|..++.+++|++|++++|++.+.+|..+..+++|++|++++|.+.+.+|..+..+++
T Consensus       230 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~  309 (968)
T PLN00113        230 YEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQN  309 (968)
T ss_pred             hhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300          238 LKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       238 L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l  269 (269)
                      |++|++++|.+ .+.+|. .+..+++|+.|++
T Consensus       310 L~~L~l~~n~~-~~~~~~-~~~~l~~L~~L~L  339 (968)
T PLN00113        310 LEILHLFSNNF-TGKIPV-ALTSLPRLQVLQL  339 (968)
T ss_pred             CcEEECCCCcc-CCcCCh-hHhcCCCCCEEEC
Confidence            99999999999 777775 7889999999875

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.83  E-value=6.7e-22  Score=174.55  Aligned_cols=190  Identities=26%  Similarity=0.243  Sum_probs=105.8

Q ss_pred             CCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCC
Q 036300           76 QSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQ  155 (269)
Q Consensus        76 ~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~  155 (269)
                      |.++.+-..-|..+ .+|..|.|++| +++..-+..|.+|++|+.|+|..|++...-...|.++++|+.|.|..|.+...
T Consensus       183 N~It~l~~~~F~~l-nsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL  260 (873)
T KOG4194|consen  183 NRITTLETGHFDSL-NSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKL  260 (873)
T ss_pred             cccccccccccccc-chheeeecccC-cccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccc
Confidence            34444444444443 34444444444 33333333444455555555555554422233445555555555555555433


Q ss_pred             CccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcC
Q 036300          156 IPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEM  235 (269)
Q Consensus       156 ~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  235 (269)
                      -...|..+.++++|++..|+++..-..++.++.+|+.|++|+|.+...-++.+...++|++|+|++|.|+...++.|..+
T Consensus       261 ~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L  340 (873)
T KOG4194|consen  261 DDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVL  340 (873)
T ss_pred             cCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHH
Confidence            33455566666666666666665445556666677777777776666666666666677777777777766666666666


Q ss_pred             CCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300          236 VSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       236 ~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l  269 (269)
                      ..|++|+|+.|.+  +.+....|..+++|+.|||
T Consensus       341 ~~Le~LnLs~Nsi--~~l~e~af~~lssL~~LdL  372 (873)
T KOG4194|consen  341 SQLEELNLSHNSI--DHLAEGAFVGLSSLHKLDL  372 (873)
T ss_pred             HHhhhhcccccch--HHHHhhHHHHhhhhhhhcC
Confidence            6666666666666  4454445555555555553

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.82  E-value=2e-22  Score=153.13  Aligned_cols=162  Identities=30%  Similarity=0.482  Sum_probs=145.9

Q ss_pred             cCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEE
Q 036300           90 ANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIF  169 (269)
Q Consensus        90 ~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  169 (269)
                      +.+++.|.+++| ++ ..+|+.++.+.+|+.|++.+|++. .+|.+++.+++|+.|++.-|++. .+|..|+.+|.|+.|
T Consensus        32 ~s~ITrLtLSHN-Kl-~~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl  107 (264)
T KOG0617|consen   32 MSNITRLTLSHN-KL-TVVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL  107 (264)
T ss_pred             hhhhhhhhcccC-ce-eecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence            377899999999 44 457889999999999999999999 89999999999999999999998 899999999999999


Q ss_pred             EccCCcCCc-hhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCC
Q 036300          170 DLSRNNLSG-SMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPI  248 (269)
Q Consensus       170 ~l~~n~l~~-~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  248 (269)
                      ++++|++.. .+|..|..+..|+.|++++|.+. .+|..++++++|+.|.+..|.+. ..|..++.++.|++|++.+|++
T Consensus       108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl  185 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRL  185 (264)
T ss_pred             hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccccee
Confidence            999999863 67888889999999999999998 68889999999999999999987 7899999999999999999999


Q ss_pred             CCCCCCcccccc
Q 036300          249 FGGGLNGIRWEN  260 (269)
Q Consensus       249 ~~~~~p~~~~~~  260 (269)
                        ..+|+ .+++
T Consensus       186 --~vlpp-el~~  194 (264)
T KOG0617|consen  186 --TVLPP-ELAN  194 (264)
T ss_pred             --eecCh-hhhh
Confidence              66775 3443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.79  E-value=5.8e-20  Score=162.41  Aligned_cols=189  Identities=26%  Similarity=0.192  Sum_probs=102.7

Q ss_pred             CCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCC
Q 036300           76 QSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQ  155 (269)
Q Consensus        76 ~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~  155 (269)
                      |.+.++..+..+.+ +.|++|||+.| .+...--+.|..-.++++|+|++|.|+..-...|.++.+|.+|.|+.|+++..
T Consensus       135 N~I~sv~se~L~~l-~alrslDLSrN-~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittL  212 (873)
T KOG4194|consen  135 NLISSVTSEELSAL-PALRSLDLSRN-LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTL  212 (873)
T ss_pred             cccccccHHHHHhH-hhhhhhhhhhc-hhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccccc
Confidence            44455555444433 55666666666 34332223455555666666666666655555666666666666666666633


Q ss_pred             CccccCCCCCCCEEEccCCcCCchhhhh------------------------hcCcccCCEEeCcCCcCCCcCchhhcCC
Q 036300          156 IPASIGGLTKLLIFDLSRNNLSGSMLLT------------------------LGKLARLLKLDLSYNNLQEKIPKEIGNL  211 (269)
Q Consensus       156 ~p~~l~~l~~L~~L~l~~n~l~~~~~~~------------------------~~~l~~L~~L~ls~n~l~~~~p~~~~~l  211 (269)
                      .+..|.++++|+.|++..|++.-.-...                        |..+.++++|+|+.|++...-..++.++
T Consensus       213 p~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgL  292 (873)
T KOG4194|consen  213 PQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGL  292 (873)
T ss_pred             CHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccccc
Confidence            3345555666666666666554221222                        3334444444444454443333444555


Q ss_pred             CCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceec
Q 036300          212 HNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWI  268 (269)
Q Consensus       212 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~  268 (269)
                      ++|+.|+|+.|.|...-++.+...++|+.|+|++|++  ..+++..|..+..|+.|+
T Consensus       293 t~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i--~~l~~~sf~~L~~Le~Ln  347 (873)
T KOG4194|consen  293 TSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRI--TRLDEGSFRVLSQLEELN  347 (873)
T ss_pred             chhhhhccchhhhheeecchhhhcccceeEecccccc--ccCChhHHHHHHHhhhhc
Confidence            5666666666666555555555566666666666666  444444555555555554

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.75  E-value=2.1e-20  Score=166.58  Aligned_cols=148  Identities=28%  Similarity=0.416  Sum_probs=86.8

Q ss_pred             ccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCC-------------------
Q 036300           70 IFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTG-------------------  130 (269)
Q Consensus        70 ~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~-------------------  130 (269)
                      .+..+.|.+-+||...|.++ ..|-.|||++| + ...+|+.+..+..|+.|.|++|.+..                   
T Consensus       130 VLNLS~N~IetIPn~lfinL-tDLLfLDLS~N-r-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~  206 (1255)
T KOG0444|consen  130 VLNLSYNNIETIPNSLFINL-TDLLFLDLSNN-R-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSN  206 (1255)
T ss_pred             EEEcccCccccCCchHHHhh-HhHhhhccccc-h-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhccc
Confidence            34445577778888887776 77888888888 3 34567777777777777777776541                   


Q ss_pred             ------CCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcC
Q 036300          131 ------KLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKI  204 (269)
Q Consensus       131 ------~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~  204 (269)
                            .+|.++-++.+|..+|++.|.+. .+|+.+-++++|+.|++++|.++ .+....+.+.+|++|++|.|+++ .+
T Consensus       207 TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~L  283 (1255)
T KOG0444|consen  207 TQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VL  283 (1255)
T ss_pred             ccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cc
Confidence                  24555555666666666666666 66666666666666666666655 33333333444444444444444 23


Q ss_pred             chhhcCCCCCCEEEccCCc
Q 036300          205 PKEIGNLHNVTFLDLRSNN  223 (269)
Q Consensus       205 p~~~~~l~~L~~L~L~~N~  223 (269)
                      |..+.++++|+.|.+.+|+
T Consensus       284 P~avcKL~kL~kLy~n~Nk  302 (1255)
T KOG0444|consen  284 PDAVCKLTKLTKLYANNNK  302 (1255)
T ss_pred             hHHHhhhHHHHHHHhccCc
Confidence            4444444444444433333

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.73  E-value=1.3e-19  Score=153.44  Aligned_cols=196  Identities=22%  Similarity=0.230  Sum_probs=142.4

Q ss_pred             cccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEccc-CCCCCCCCCCCCCCCCCCEEE-
Q 036300           69 KIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLE-KGLTGKLPIEPSKLVNLRRLA-  146 (269)
Q Consensus        69 ~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~-  146 (269)
                      ..+....|.+.+||+..|+.+ ++|++|||++| .|+..-|.+|..++.|..|.+.+ |+|+......|.++..|+.|. 
T Consensus        70 veirLdqN~I~~iP~~aF~~l-~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   70 VEIRLDQNQISSIPPGAFKTL-HRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             eEEEeccCCcccCChhhccch-hhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            344555689999999999998 99999999999 79888899999999988887766 888844334565555555444 


Q ss_pred             -----------------------ccCCcCCCCCcc-ccCCCCCCCEEEccCCcCC-------------------------
Q 036300          147 -----------------------LAGNQINGQIPA-SIGGLTKLLIFDLSRNNLS-------------------------  177 (269)
Q Consensus       147 -----------------------L~~n~l~~~~p~-~l~~l~~L~~L~l~~n~l~-------------------------  177 (269)
                                             +.+|.+. .++. .|..+.+++++.+..|.+-                         
T Consensus       148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~  226 (498)
T KOG4237|consen  148 NANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV  226 (498)
T ss_pred             ChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence                                   4444444 3332 4555555555555554410                         


Q ss_pred             ------------------------------------chhh-hhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEcc
Q 036300          178 ------------------------------------GSML-LTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLR  220 (269)
Q Consensus       178 ------------------------------------~~~~-~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~  220 (269)
                                                          +..| ..|..+++|+.|++++|++++.-+.+|.+..++++|.|.
T Consensus       227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~  306 (498)
T KOG4237|consen  227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLT  306 (498)
T ss_pred             chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcC
Confidence                                                0011 246677888889999998888778888888888999998


Q ss_pred             CCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300          221 SNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       221 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l  269 (269)
                      .|++...-...|.++..|+.|+|.+|+| +...| ..|..+.+|..|.+
T Consensus       307 ~N~l~~v~~~~f~~ls~L~tL~L~~N~i-t~~~~-~aF~~~~~l~~l~l  353 (498)
T KOG4237|consen  307 RNKLEFVSSGMFQGLSGLKTLSLYDNQI-TTVAP-GAFQTLFSLSTLNL  353 (498)
T ss_pred             cchHHHHHHHhhhccccceeeeecCCee-EEEec-ccccccceeeeeeh
Confidence            8888766667888889999999999998 44444 37777777777653

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.73  E-value=1.5e-19  Score=161.16  Aligned_cols=201  Identities=27%  Similarity=0.336  Sum_probs=110.7

Q ss_pred             CCCCCCcccccccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCc-cccCCCCCCEEEcccCCCCCCCCCC
Q 036300           57 PVYDNSLVCSQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPT-SIDYLKNLQSLVLLEKGLTGKLPIE  135 (269)
Q Consensus        57 ~~~~~~~~~~~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~  135 (269)
                      .+|+..+....++.+..+.|.+.++|.+.  ...+++-+|+|++| ++ ..+|. -|.++..|-.|+|++|++. .+|..
T Consensus        94 GiP~diF~l~dLt~lDLShNqL~EvP~~L--E~AKn~iVLNLS~N-~I-etIPn~lfinLtDLLfLDLS~NrLe-~LPPQ  168 (1255)
T KOG0444|consen   94 GIPTDIFRLKDLTILDLSHNQLREVPTNL--EYAKNSIVLNLSYN-NI-ETIPNSLFINLTDLLFLDLSNNRLE-MLPPQ  168 (1255)
T ss_pred             CCCchhcccccceeeecchhhhhhcchhh--hhhcCcEEEEcccC-cc-ccCCchHHHhhHhHhhhccccchhh-hcCHH
Confidence            34444455555555555556666666554  22355666666666 33 33443 3445666666666666665 55555


Q ss_pred             CCCCCCCCEEEccCCcCC-------------------------CCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccC
Q 036300          136 PSKLVNLRRLALAGNQIN-------------------------GQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARL  190 (269)
Q Consensus       136 ~~~l~~L~~L~L~~n~l~-------------------------~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  190 (269)
                      +..+..|++|+|++|.+.                         ..+|.++..+.+|..++++.|.+. .+|..+.++++|
T Consensus       169 ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~L  247 (1255)
T KOG0444|consen  169 IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNL  247 (1255)
T ss_pred             HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhh
Confidence            666666666666665432                         123344444445555555555554 455555556666


Q ss_pred             CEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCce
Q 036300          191 LKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEI  266 (269)
Q Consensus       191 ~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~  266 (269)
                      +.|+||+|+++. +.-..+.+.+|++|+++.|+++ .+|.++..+++|+.|.+.+|+++-..+|+ .++++..|+.
T Consensus       248 rrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPS-GIGKL~~Lev  320 (1255)
T KOG0444|consen  248 RRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPS-GIGKLIQLEV  320 (1255)
T ss_pred             heeccCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCcc-chhhhhhhHH
Confidence            666666666552 3334445555666666666665 55666666666666666666664455554 4555555544

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.73  E-value=4.8e-19  Score=150.52  Aligned_cols=200  Identities=27%  Similarity=0.371  Sum_probs=134.7

Q ss_pred             CCcccccccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCC
Q 036300           61 NSLVCSQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLV  140 (269)
Q Consensus        61 ~~~~~~~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~  140 (269)
                      ...+|..+..+..+.+++..+|++....+ +++.+||++.|+  ..++|..+..+.+|++||+++|.++ .+|.+++++ 
T Consensus       223 ef~gcs~L~Elh~g~N~i~~lpae~~~~L-~~l~vLDLRdNk--lke~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-  297 (565)
T KOG0472|consen  223 EFPGCSLLKELHVGENQIEMLPAEHLKHL-NSLLVLDLRDNK--LKEVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-  297 (565)
T ss_pred             CCCccHHHHHHHhcccHHHhhHHHHhccc-ccceeeeccccc--cccCchHHHHhhhhhhhcccCCccc-cCCcccccc-
Confidence            45678788888888888999999887666 889999999994  4568888888999999999999998 677788887 


Q ss_pred             CCCEEEccCCcCCC----------------------------------------------------------------CC
Q 036300          141 NLRRLALAGNQING----------------------------------------------------------------QI  156 (269)
Q Consensus       141 ~L~~L~L~~n~l~~----------------------------------------------------------------~~  156 (269)
                      .|+.|-+.+|.+..                                                                .+
T Consensus       298 hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~V  377 (565)
T KOG0472|consen  298 HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLV  377 (565)
T ss_pred             eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccC
Confidence            77777776665421                                                                01


Q ss_pred             ccccCCCC---CCCEEEccCCcCC-----------------------chhhhhhcCcccCCEEeCcCCcCCCcCchhhcC
Q 036300          157 PASIGGLT---KLLIFDLSRNNLS-----------------------GSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGN  210 (269)
Q Consensus       157 p~~l~~l~---~L~~L~l~~n~l~-----------------------~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~  210 (269)
                      |+......   -.+..+++.|++.                       +.+|..+..+++|..|++++|-+. .+|..++.
T Consensus       378 PdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~  456 (565)
T KOG0472|consen  378 PDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGS  456 (565)
T ss_pred             CHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhh
Confidence            11000000   1233344444332                       123444555666777777776665 46666666


Q ss_pred             CCCCCEEEccCCccC-----------------------CcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCcee
Q 036300          211 LHNVTFLDLRSNNFL-----------------------GGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIW  267 (269)
Q Consensus       211 l~~L~~L~L~~N~l~-----------------------~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L  267 (269)
                      +..|+.|+++.|+|.                       ...+..+.+|.+|+.||+.+|.+  ..+|+ .+++|.+|+.|
T Consensus       457 lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdl--q~IPp-~LgnmtnL~hL  533 (565)
T KOG0472|consen  457 LVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDL--QQIPP-ILGNMTNLRHL  533 (565)
T ss_pred             hhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCch--hhCCh-hhccccceeEE
Confidence            666777777766653                       12233366678888888888888  77776 78888888887


Q ss_pred             cC
Q 036300          268 IF  269 (269)
Q Consensus       268 ~l  269 (269)
                      ++
T Consensus       534 eL  535 (565)
T KOG0472|consen  534 EL  535 (565)
T ss_pred             Ee
Confidence            64

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.72  E-value=6.8e-20  Score=139.44  Aligned_cols=152  Identities=29%  Similarity=0.408  Sum_probs=138.3

Q ss_pred             cccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccC
Q 036300          111 SIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARL  190 (269)
Q Consensus       111 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  190 (269)
                      .+..+.+++.|.+++|.++ .+|..+..+.+|+.|++.+|+++ .+|..++.+++|+.|+++-|++. ..|..|+.++.|
T Consensus        28 gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l  104 (264)
T KOG0617|consen   28 GLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL  104 (264)
T ss_pred             cccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchh
Confidence            3456788899999999999 78889999999999999999999 89999999999999999999998 889999999999


Q ss_pred             CEEeCcCCcCCC-cCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300          191 LKLDLSYNNLQE-KIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       191 ~~L~ls~n~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l  269 (269)
                      +.||+++|++.. .+|..|..++.|+.|.|+.|.+. .+|..++++++|+.|.+..|.+  -.+|. .++.+..|+.|.+
T Consensus       105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndl--l~lpk-eig~lt~lrelhi  180 (264)
T KOG0617|consen  105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDL--LSLPK-EIGDLTRLRELHI  180 (264)
T ss_pred             hhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCch--hhCcH-HHHHHHHHHHHhc
Confidence            999999999875 57888999999999999999997 7889999999999999999999  77886 7788888877653

>PLN03150 hypothetical protein; Provisional

Probab=99.71  E-value=7.4e-17  Score=150.79  Aligned_cols=150  Identities=33%  Similarity=0.499  Sum_probs=91.1

Q ss_pred             CHHHHHHHHHHHhcccC---CCCCCCCCCCCCCC--CCCCCceEeecCC--CceEEEEEEeCCCCCCCcccccccccCCC
Q 036300            2 ERKEKEALYSTIQGFVG---KWWNGSDLYPDPFG--RTGLQGVSCDFFH--GLWHVSAISIGPVYDNSLVCSQCKIFKPP   74 (269)
Q Consensus         2 ~~~~~~~l~~~~~~~~~---~~W~~~~~~~~~C~--~~~~~gv~C~~~~--~~~~v~~l~l~~~~~~~~~~~~l~~~~~~   74 (269)
                      .++|++||.++|+++..   .+|.+     ++|.  +..|.||.|....  +.++                         
T Consensus       370 ~~~~~~aL~~~k~~~~~~~~~~W~g-----~~C~p~~~~w~Gv~C~~~~~~~~~~-------------------------  419 (623)
T PLN03150        370 LLEEVSALQTLKSSLGLPLRFGWNG-----DPCVPQQHPWSGADCQFDSTKGKWF-------------------------  419 (623)
T ss_pred             CchHHHHHHHHHHhcCCcccCCCCC-----CCCCCcccccccceeeccCCCCceE-------------------------
Confidence            46799999999999865   37854     5662  1234599996322  1112                         


Q ss_pred             CCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCC
Q 036300           75 LQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQING  154 (269)
Q Consensus        75 ~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~  154 (269)
                                        ++.|+|++| .+.+.+|..+..+++|+.|+|++|.+.|.+|..++.+++|+.|+|++|++++
T Consensus       420 ------------------v~~L~L~~n-~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg  480 (623)
T PLN03150        420 ------------------IDGLGLDNQ-GLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNG  480 (623)
T ss_pred             ------------------EEEEECCCC-CccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCC
Confidence                              445555555 5555666666666666666666666666666666666666666666666666


Q ss_pred             CCccccCCCCCCCEEEccCCcCCchhhhhhcCc-ccCCEEeCcCCcC
Q 036300          155 QIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKL-ARLLKLDLSYNNL  200 (269)
Q Consensus       155 ~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~ls~n~l  200 (269)
                      .+|..+..+++|++|++++|.+++.+|..+... .++..+++.+|..
T Consensus       481 ~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        481 SIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             CCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCcc
Confidence            666666666666666666666666666555432 3445555555543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.70  E-value=1e-19  Score=154.53  Aligned_cols=178  Identities=26%  Similarity=0.377  Sum_probs=124.1

Q ss_pred             CCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCC
Q 036300           77 SPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQI  156 (269)
Q Consensus        77 ~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~  156 (269)
                      ...++|++++.  +..++.++..+| .+ ..+|+.+..+.+|..+++.+|.+. ..|+..-+++.|+.+|...|-++ .+
T Consensus       125 ~~~el~~~i~~--~~~l~dl~~~~N-~i-~slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~~~N~L~-tl  198 (565)
T KOG0472|consen  125 ELKELPDSIGR--LLDLEDLDATNN-QI-SSLPEDMVNLSKLSKLDLEGNKLK-ALPENHIAMKRLKHLDCNSNLLE-TL  198 (565)
T ss_pred             ceeecCchHHH--Hhhhhhhhcccc-cc-ccCchHHHHHHHHHHhhccccchh-hCCHHHHHHHHHHhcccchhhhh-cC
Confidence            34444444433  234444444444 22 234445555555555555555555 33333334667777777777776 77


Q ss_pred             ccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhc-CCCCCCEEEccCCccCCcchhhhhcC
Q 036300          157 PASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIG-NLHNVTFLDLRSNNFLGGLVGSIEEM  235 (269)
Q Consensus       157 p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l  235 (269)
                      |..++.+.+|+.|++.+|++. .+| .|..+..|.+++++.|++. .+|.... ++.++..|||+.|+++ ..|..+.-+
T Consensus       199 P~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clL  274 (565)
T KOG0472|consen  199 PPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLL  274 (565)
T ss_pred             ChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHh
Confidence            888888888888888888887 666 6778888888888888887 5665554 8899999999999998 788888889


Q ss_pred             CCCCeEEccCCCCCCCCCCccccccCcCCceec
Q 036300          236 VSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWI  268 (269)
Q Consensus       236 ~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~  268 (269)
                      .+|.+||+++|.+  ..+|. .++++ .|+.|.
T Consensus       275 rsL~rLDlSNN~i--s~Lp~-sLgnl-hL~~L~  303 (565)
T KOG0472|consen  275 RSLERLDLSNNDI--SSLPY-SLGNL-HLKFLA  303 (565)
T ss_pred             hhhhhhcccCCcc--ccCCc-ccccc-eeeehh
Confidence            9999999999999  66775 78887 777664

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.65  E-value=1.3e-17  Score=141.60  Aligned_cols=184  Identities=24%  Similarity=0.305  Sum_probs=141.0

Q ss_pred             CcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccC-CcCCCCC
Q 036300           78 PIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAG-NQINGQI  156 (269)
Q Consensus        78 ~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~  156 (269)
                      +.+||.++    ++....++|..| .|....+.+|+.+++|+.|+|++|+|+.+.|.+|.++++|..|-+.+ |+|+ .+
T Consensus        58 L~eVP~~L----P~~tveirLdqN-~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l  131 (498)
T KOG4237|consen   58 LTEVPANL----PPETVEIRLDQN-QISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DL  131 (498)
T ss_pred             cccCcccC----CCcceEEEeccC-CcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hh
Confidence            34566654    678899999999 78777777999999999999999999999999999999988887776 8888 44


Q ss_pred             c-cccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCC----------------------------------
Q 036300          157 P-ASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQ----------------------------------  201 (269)
Q Consensus       157 p-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~----------------------------------  201 (269)
                      | ..|.++.+|+.|.+.-|.+.-.....|..++++..|.+.+|.+.                                  
T Consensus       132 ~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~  211 (498)
T KOG4237|consen  132 PKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLAD  211 (498)
T ss_pred             hhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhh
Confidence            4 45666666666666666555444444444444444444443322                                  


Q ss_pred             ---------------------------------------------------CcCc-hhhcCCCCCCEEEccCCccCCcch
Q 036300          202 ---------------------------------------------------EKIP-KEIGNLHNVTFLDLRSNNFLGGLV  229 (269)
Q Consensus       202 ---------------------------------------------------~~~p-~~~~~l~~L~~L~L~~N~l~~~~~  229 (269)
                                                                         +..| ..|..+++|+.|+|++|++++..+
T Consensus       212 ~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~  291 (498)
T KOG4237|consen  212 DLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIED  291 (498)
T ss_pred             HHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhh
Confidence                                                               1112 357788999999999999999889


Q ss_pred             hhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300          230 GSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       230 ~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l  269 (269)
                      .+|.+...+++|.|..|++  ..+....|.++..|+.|+|
T Consensus       292 ~aFe~~a~l~eL~L~~N~l--~~v~~~~f~~ls~L~tL~L  329 (498)
T KOG4237|consen  292 GAFEGAAELQELYLTRNKL--EFVSSGMFQGLSGLKTLSL  329 (498)
T ss_pred             hhhcchhhhhhhhcCcchH--HHHHHHhhhccccceeeee
Confidence            9999999999999999999  6677678999999998865

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.63  E-value=9.6e-18  Score=155.05  Aligned_cols=203  Identities=25%  Similarity=0.282  Sum_probs=133.9

Q ss_pred             CCCCCCcccccccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCC
Q 036300           57 PVYDNSLVCSQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEP  136 (269)
Q Consensus        57 ~~~~~~~~~~~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~  136 (269)
                      .+|+....|.+++.++...+.+..+|..++.  ..+|+.|....| .+. -+|+....++.|++|+|..|.+. .+|+.+
T Consensus       255 ~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~--~~~L~~l~~~~n-el~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~  329 (1081)
T KOG0618|consen  255 NLPEWIGACANLEALNANHNRLVALPLRISR--ITSLVSLSAAYN-ELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNF  329 (1081)
T ss_pred             cchHHHHhcccceEecccchhHHhhHHHHhh--hhhHHHHHhhhh-hhh-hCCCcccccceeeeeeehhcccc-ccchHH
Confidence            4555667777888888887777888887765  367777777777 443 36666777888888888888776 344321


Q ss_pred             --------------------------CCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccC
Q 036300          137 --------------------------SKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARL  190 (269)
Q Consensus       137 --------------------------~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  190 (269)
                                                ..++.|+.|++.+|.+++..-..+.++++|+.|+|++|++.......+.++..|
T Consensus       330 l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~L  409 (1081)
T KOG0618|consen  330 LAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEEL  409 (1081)
T ss_pred             HhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHh
Confidence                                      012335666777777776655566677777777777777764444556677777


Q ss_pred             CEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300          191 LKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       191 ~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l  269 (269)
                      +.|+||+|+++ .+|..+..++.|++|..-+|.+. ..| .+..++.|+.+|++.|.+....+|. .. ..|+|++||+
T Consensus       410 eeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~-~~-p~p~LkyLdl  483 (1081)
T KOG0618|consen  410 EELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPE-AL-PSPNLKYLDL  483 (1081)
T ss_pred             HHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhh-hC-CCcccceeec
Confidence            77777777776 46666666666666666666665 445 6666777777777777774444443 22 2266777664

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.63  E-value=9.8e-15  Score=137.89  Aligned_cols=31  Identities=10%  Similarity=0.020  Sum_probs=22.7

Q ss_pred             CCHHHHHHHHHHHhcccC--------CCCCCCCCCCCCCCCC
Q 036300            1 MERKEKEALYSTIQGFVG--------KWWNGSDLYPDPFGRT   34 (269)
Q Consensus         1 ~~~~~~~~l~~~~~~~~~--------~~W~~~~~~~~~C~~~   34 (269)
                      |.++|...+++..+.+.-        .+|.+.+   ++|.-.
T Consensus        60 ~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~---~fc~~~   98 (754)
T PRK15370         60 ASPEEIKSKFECLRMLAFPAYADNIQYSRGGAD---QYCILS   98 (754)
T ss_pred             CCHHHHHHHHHHHHHhcCCchhhccccccCCCC---cccccC
Confidence            457888999998888864        3477764   899654

>PLN03210 Resistant to P

Probab=99.58  E-value=2.9e-14  Score=142.06  Aligned_cols=58  Identities=29%  Similarity=0.433  Sum_probs=31.9

Q ss_pred             CCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCC
Q 036300           91 NSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGN  150 (269)
Q Consensus        91 ~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n  150 (269)
                      ++|+.|+|++| .....+|..+..+++|+.|++++|...+.+|..+ ++++|+.|++++|
T Consensus       657 ~~Le~L~L~~c-~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc  714 (1153)
T PLN03210        657 TNLETLKLSDC-SSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGC  714 (1153)
T ss_pred             CcccEEEecCC-CCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCC
Confidence            56666666666 3445566666666666666666654333455433 3444444444444

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.56  E-value=6.3e-14  Score=139.70  Aligned_cols=168  Identities=22%  Similarity=0.209  Sum_probs=84.8

Q ss_pred             CCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEE
Q 036300           91 NSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFD  170 (269)
Q Consensus        91 ~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  170 (269)
                      ++|+.|+|+++ .....+| .++.+++|+.|++++|.....+|..+..+++|+.|++++|.....+|..+ ++++|++|+
T Consensus       634 ~~Lk~L~Ls~~-~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~  710 (1153)
T PLN03210        634 TGLRNIDLRGS-KNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLN  710 (1153)
T ss_pred             CCCCEEECCCC-CCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEe
Confidence            45555555554 2233344 24455555555555554444555555555555555555543333444433 445555555


Q ss_pred             ccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhh------------------------------cCCCCCCEEEcc
Q 036300          171 LSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEI------------------------------GNLHNVTFLDLR  220 (269)
Q Consensus       171 l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~------------------------------~~l~~L~~L~L~  220 (269)
                      +++|.....+|..   ..+|+.|++++|.+. .+|..+                              ...++|+.|+++
T Consensus       711 Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls  786 (1153)
T PLN03210        711 LSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLS  786 (1153)
T ss_pred             CCCCCCccccccc---cCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccchheeCC
Confidence            5554332222221   234444555555443 223211                              112356666676


Q ss_pred             CCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceec
Q 036300          221 SNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWI  268 (269)
Q Consensus       221 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~  268 (269)
                      +|.....+|..++++++|+.|++++|.. -+.+|.. . ++++|+.|+
T Consensus       787 ~n~~l~~lP~si~~L~~L~~L~Ls~C~~-L~~LP~~-~-~L~sL~~L~  831 (1153)
T PLN03210        787 DIPSLVELPSSIQNLHKLEHLEIENCIN-LETLPTG-I-NLESLESLD  831 (1153)
T ss_pred             CCCCccccChhhhCCCCCCEEECCCCCC-cCeeCCC-C-CccccCEEE
Confidence            6665556777777777777777777643 2555542 2 455555554

syringae 6; Provisional

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.55  E-value=1.7e-15  Score=130.75  Aligned_cols=155  Identities=26%  Similarity=0.313  Sum_probs=84.4

Q ss_pred             ccEEEccCCCCcee----ccCccccCC-CCCCEEEcccCCCCCC----CCCCCCCCCCCCEEEccCCcCCCC----Cccc
Q 036300           93 LDSLEFGSNPRLIG----TIPTSIDYL-KNLQSLVLLEKGLTGK----LPIEPSKLVNLRRLALAGNQINGQ----IPAS  159 (269)
Q Consensus        93 L~~L~l~~n~~l~~----~~p~~l~~l-~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~p~~  159 (269)
                      |++|++++| .+.+    .+...+..+ ++|+.|++++|.+++.    ++..+..+.+|++|++++|.+++.    ++..
T Consensus       110 L~~L~ls~~-~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~  188 (319)
T cd00116         110 LQELKLNNN-GLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEG  188 (319)
T ss_pred             ccEEEeeCC-ccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHH
Confidence            666666666 4442    222334455 6666666666666532    222344555666666666666532    2223


Q ss_pred             cCCCCCCCEEEccCCcCCchh----hhhhcCcccCCEEeCcCCcCCCcCchhhc-----CCCCCCEEEccCCccCC----
Q 036300          160 IGGLTKLLIFDLSRNNLSGSM----LLTLGKLARLLKLDLSYNNLQEKIPKEIG-----NLHNVTFLDLRSNNFLG----  226 (269)
Q Consensus       160 l~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~ls~n~l~~~~p~~~~-----~l~~L~~L~L~~N~l~~----  226 (269)
                      +..+++|++|++++|.+++..    ...+..+++|++|++++|.+++.....+.     ..+.|++|++++|.++.    
T Consensus       189 l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~  268 (319)
T cd00116         189 LKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAK  268 (319)
T ss_pred             HHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHH
Confidence            344456666666666665332    23344556667777766666542222221     12566677777666652    


Q ss_pred             cchhhhhcCCCCCeEEccCCCC
Q 036300          227 GLVGSIEEMVSLKEMVVSNNPI  248 (269)
Q Consensus       227 ~~~~~~~~l~~L~~L~l~~N~l  248 (269)
                      .+...+..+++|+++++++|.+
T Consensus       269 ~l~~~~~~~~~L~~l~l~~N~l  290 (319)
T cd00116         269 DLAEVLAEKESLLELDLRGNKF  290 (319)
T ss_pred             HHHHHHhcCCCccEEECCCCCC
Confidence            2334445556667777777766

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.54  E-value=1.6e-15  Score=130.97  Aligned_cols=178  Identities=22%  Similarity=0.281  Sum_probs=130.0

Q ss_pred             cCCccEEEccCCCCceeccCccccCCCC---CCEEEcccCCCCC----CCCCCCCCC-CCCCEEEccCCcCCCC----Cc
Q 036300           90 ANSLDSLEFGSNPRLIGTIPTSIDYLKN---LQSLVLLEKGLTG----KLPIEPSKL-VNLRRLALAGNQINGQ----IP  157 (269)
Q Consensus        90 ~~~L~~L~l~~n~~l~~~~p~~l~~l~~---L~~L~L~~n~l~~----~~p~~~~~l-~~L~~L~L~~n~l~~~----~p  157 (269)
                      +++|+.|++++| .+.+..+..+..+.+   |++|++++|.+.+    .+...+..+ ++|+.|++++|.+++.    ++
T Consensus        80 ~~~L~~L~l~~~-~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~  158 (319)
T cd00116          80 GCGLQELDLSDN-ALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALA  158 (319)
T ss_pred             cCceeEEEccCC-CCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHH
Confidence            479999999999 676555555555555   9999999999873    223345566 8999999999999843    33


Q ss_pred             cccCCCCCCCEEEccCCcCCch----hhhhhcCcccCCEEeCcCCcCCCc----CchhhcCCCCCCEEEccCCccCCcch
Q 036300          158 ASIGGLTKLLIFDLSRNNLSGS----MLLTLGKLARLLKLDLSYNNLQEK----IPKEIGNLHNVTFLDLRSNNFLGGLV  229 (269)
Q Consensus       158 ~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~~  229 (269)
                      ..+..+++|++|++++|.+++.    ++..+...++|+.|++++|.+.+.    ++..+..+++|++|++++|.+++...
T Consensus       159 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~  238 (319)
T cd00116         159 KALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGA  238 (319)
T ss_pred             HHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHH
Confidence            4566778999999999999843    344556667999999999998753    33456678899999999999986444


Q ss_pred             hhhhc-----CCCCCeEEccCCCCCCC---CCCccccccCcCCceecC
Q 036300          230 GSIEE-----MVSLKEMVVSNNPIFGG---GLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       230 ~~~~~-----l~~L~~L~l~~N~l~~~---~~p~~~~~~l~~L~~L~l  269 (269)
                      ..+..     .+.|++|++++|.++..   .+. ..+..+++|+++++
T Consensus       239 ~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~-~~~~~~~~L~~l~l  285 (319)
T cd00116         239 AALASALLSPNISLLTLSLSCNDITDDGAKDLA-EVLAEKESLLELDL  285 (319)
T ss_pred             HHHHHHHhccCCCceEEEccCCCCCcHHHHHHH-HHHhcCCCccEEEC
Confidence            33332     37999999999999211   122 24455677887764

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.53  E-value=5.7e-16  Score=143.47  Aligned_cols=145  Identities=28%  Similarity=0.294  Sum_probs=107.5

Q ss_pred             CCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcc-ccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEE
Q 036300          115 LKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPA-SIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKL  193 (269)
Q Consensus       115 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  193 (269)
                      ++.|+.|++.+|.++......+.++++|++|+|++|++. .+|. .+.+++.|++|++++|+++ .+|..+.+++.|++|
T Consensus       358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL  435 (1081)
T KOG0618|consen  358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTL  435 (1081)
T ss_pred             hHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHH
Confidence            345777888888888777777888888888888888888 6664 5678888888888888888 778888888888888


Q ss_pred             eCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCc
Q 036300          194 DLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLE  265 (269)
Q Consensus       194 ~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~  265 (269)
                      ....|++. .+| .+..++.|+.+|++.|.++...-......++|++||++||.-  ..+....+..++++.
T Consensus       436 ~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~--l~~d~~~l~~l~~l~  503 (1081)
T KOG0618|consen  436 RAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR--LVFDHKTLKVLKSLS  503 (1081)
T ss_pred             hhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc--cccchhhhHHhhhhh
Confidence            88888887 467 678888888888888888753322222237888888888874  333323344444443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.53  E-value=1.8e-14  Score=136.16  Aligned_cols=34  Identities=35%  Similarity=0.434  Sum_probs=14.7

Q ss_pred             CCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCC
Q 036300          117 NLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQIN  153 (269)
Q Consensus       117 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~  153 (269)
                      +|+.|++++|.++ .+|..+.  ++|+.|++++|+++
T Consensus       263 ~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt  296 (754)
T PRK15370        263 ALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR  296 (754)
T ss_pred             CCCEEECcCCccC-ccccccC--CCCcEEECCCCccc
Confidence            3444444444444 2333322  24444444444444

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.51  E-value=8e-14  Score=131.39  Aligned_cols=34  Identities=21%  Similarity=0.271  Sum_probs=16.8

Q ss_pred             CCEEEccCCccCCcchhhhhcCCCCCeEEccCCCC
Q 036300          214 VTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPI  248 (269)
Q Consensus       214 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  248 (269)
                      |+.|++++|+++ .+|..+..+++|+.|++++|++
T Consensus       424 L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~L  457 (788)
T PRK15387        424 LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPL  457 (788)
T ss_pred             hhhhhhccCccc-ccChHHhhccCCCeEECCCCCC
Confidence            344444444444 3444455555555555555555

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.48  E-value=1.1e-13  Score=130.48  Aligned_cols=154  Identities=22%  Similarity=0.202  Sum_probs=105.2

Q ss_pred             CCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCC---CC--------------CCCCCCEEEccCCcCC
Q 036300           91 NSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIE---PS--------------KLVNLRRLALAGNQIN  153 (269)
Q Consensus        91 ~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~---~~--------------~l~~L~~L~L~~n~l~  153 (269)
                      ..|+.|++++| .+.. +|.   .+++|+.|++++|.+++ +|..   +.              ...+|++|++++|+++
T Consensus       282 ~~L~~L~Ls~N-~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls  355 (788)
T PRK15387        282 SGLCKLWIFGN-QLTS-LPV---LPPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLA  355 (788)
T ss_pred             hhcCEEECcCC-cccc-ccc---cccccceeECCCCcccc-CCCCcccccccccccCccccccccccccceEecCCCccC
Confidence            44556666666 3432 333   13456666666666653 2221   10              1136888888888888


Q ss_pred             CCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhh
Q 036300          154 GQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIE  233 (269)
Q Consensus       154 ~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~  233 (269)
                       .+|..   ..+|+.|++++|.++ .+|..   ..+|+.|++++|++++ +|..   .++|+.|++++|.++. +|... 
T Consensus       356 -~LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l~-  421 (788)
T PRK15387        356 -SLPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPMLP-  421 (788)
T ss_pred             -CCCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcch-
Confidence             56653   346778888888887 45543   3579999999999985 5653   3679999999999984 56433 


Q ss_pred             cCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300          234 EMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       234 ~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l  269 (269)
                        .+|+.|++++|++  ..+|. .+.++++|+.|+|
T Consensus       422 --~~L~~L~Ls~NqL--t~LP~-sl~~L~~L~~LdL  452 (788)
T PRK15387        422 --SGLLSLSVYRNQL--TRLPE-SLIHLSSETTVNL  452 (788)
T ss_pred             --hhhhhhhhccCcc--cccCh-HHhhccCCCeEEC
Confidence              4678899999999  57886 6888999988875

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.44  E-value=1.5e-15  Score=134.31  Aligned_cols=171  Identities=29%  Similarity=0.391  Sum_probs=147.4

Q ss_pred             CCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCc
Q 036300           72 KPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQ  151 (269)
Q Consensus        72 ~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~  151 (269)
                      ....+...++|.++-.  +..|+.+.++.| .+ -.+|..+..+..|++|+|+.|++. .+|..+..|+ |+.|-+++|+
T Consensus        81 DlsrNR~~elp~~~~~--f~~Le~liLy~n-~~-r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNk  154 (722)
T KOG0532|consen   81 DLSRNRFSELPEEACA--FVSLESLILYHN-CI-RTIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNK  154 (722)
T ss_pred             hccccccccCchHHHH--HHHHHHHHHHhc-cc-eecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCc
Confidence            3444778889988633  367899999888 44 458889999999999999999999 7888887775 8999999999


Q ss_pred             CCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhh
Q 036300          152 INGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGS  231 (269)
Q Consensus       152 l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~  231 (269)
                      ++ .+|+.++..+.|..|+.+.|.+. .+|..++.+.+|+.|.+..|++. .+|+.+..+ .|..||++.|+++ .+|-.
T Consensus       155 l~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~  229 (722)
T KOG0532|consen  155 LT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVD  229 (722)
T ss_pred             cc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchh
Confidence            99 88999998999999999999998 78888999999999999999998 478888854 5899999999998 88999


Q ss_pred             hhcCCCCCeEEccCCCCCCCCCCc
Q 036300          232 IEEMVSLKEMVVSNNPIFGGGLNG  255 (269)
Q Consensus       232 ~~~l~~L~~L~l~~N~l~~~~~p~  255 (269)
                      |.+|+.|++|-|.+|++  ..-|+
T Consensus       230 fr~m~~Lq~l~LenNPL--qSPPA  251 (722)
T KOG0532|consen  230 FRKMRHLQVLQLENNPL--QSPPA  251 (722)
T ss_pred             hhhhhhheeeeeccCCC--CCChH
Confidence            99999999999999999  44443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.41  E-value=1.4e-14  Score=128.21  Aligned_cols=179  Identities=24%  Similarity=0.351  Sum_probs=132.4

Q ss_pred             CcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCc
Q 036300           78 PIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIP  157 (269)
Q Consensus        78 ~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p  157 (269)
                      ...+|...+.--+..-...|++.|+  ..++|..+..+..|+.+.+..|.+. .+|..+.++..|.+++|+.|+++ .+|
T Consensus        62 lk~fpr~a~~~~ltdt~~aDlsrNR--~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp  137 (722)
T KOG0532|consen   62 LKEFPRGAASYDLTDTVFADLSRNR--FSELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLP  137 (722)
T ss_pred             hhcCCCccccccccchhhhhccccc--cccCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCC
Confidence            3444443332113455667788883  3457777777778888888888887 77888888888888888888888 777


Q ss_pred             cccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCC
Q 036300          158 ASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVS  237 (269)
Q Consensus       158 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  237 (269)
                      ..++.|+ |+.|.+++|+++ .+|..++....|..||.+.|.+. .+|..++++.+|+.|.++.|++. .+|+.+.. -.
T Consensus       138 ~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~-Lp  212 (722)
T KOG0532|consen  138 DGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCS-LP  212 (722)
T ss_pred             hhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhC-Cc
Confidence            7777775 788888888887 77777777788888888888887 46777888888888888888877 45556663 45


Q ss_pred             CCeEEccCCCCCCCCCCccccccCcCCceec
Q 036300          238 LKEMVVSNNPIFGGGLNGIRWENLQNLEIWI  268 (269)
Q Consensus       238 L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~  268 (269)
                      |..||++.|++  ..+|. .|.+|+.|++|-
T Consensus       213 Li~lDfScNki--s~iPv-~fr~m~~Lq~l~  240 (722)
T KOG0532|consen  213 LIRLDFSCNKI--SYLPV-DFRKMRHLQVLQ  240 (722)
T ss_pred             eeeeecccCce--eecch-hhhhhhhheeee
Confidence            77888888888  77776 677888887764

>PLN03150 hypothetical protein; Provisional

Probab=99.36  E-value=2.4e-12  Score=120.67  Aligned_cols=107  Identities=28%  Similarity=0.490  Sum_probs=97.4

Q ss_pred             CCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccC
Q 036300          142 LRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRS  221 (269)
Q Consensus       142 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~  221 (269)
                      ++.|+|++|.+++.+|..+..+++|++|++++|.+.+.+|..++.+++|+.|++++|++++.+|..++.+++|+.|+|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            77899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCCcchhhhhcC-CCCCeEEccCCCC
Q 036300          222 NNFLGGLVGSIEEM-VSLKEMVVSNNPI  248 (269)
Q Consensus       222 N~l~~~~~~~~~~l-~~L~~L~l~~N~l  248 (269)
                      |.+++.+|..+... .++..+++.+|..
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCcc
Confidence            99999999888764 4677899999986

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.35  E-value=8.1e-13  Score=103.51  Aligned_cols=129  Identities=25%  Similarity=0.251  Sum_probs=49.7

Q ss_pred             ccCCCCCCEEEcccCCCCCCCCCCCC-CCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccC
Q 036300          112 IDYLKNLQSLVLLEKGLTGKLPIEPS-KLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARL  190 (269)
Q Consensus       112 l~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  190 (269)
                      +.+..++++|+|++|.|+. + +.++ .+.+|+.|++++|.++ .++ .+..++.|++|++++|+++...+.....+++|
T Consensus        15 ~~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L   90 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNL   90 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-CHHHHHH-TT-
T ss_pred             ccccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCccccchHHhCCcC
Confidence            3445578899999998883 3 3455 5788999999999988 554 47778889999999999884333222457889


Q ss_pred             CEEeCcCCcCCCcC-chhhcCCCCCCEEEccCCccCCc---chhhhhcCCCCCeEEcc
Q 036300          191 LKLDLSYNNLQEKI-PKEIGNLHNVTFLDLRSNNFLGG---LVGSIEEMVSLKEMVVS  244 (269)
Q Consensus       191 ~~L~ls~n~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~---~~~~~~~l~~L~~L~l~  244 (269)
                      +.|++++|++...- -..+..+++|+.|++.+|.++..   -...+..+|+|+.||-.
T Consensus        91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            99999999887521 24567788888999988888743   12356778888887653

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.32  E-value=2.5e-12  Score=100.81  Aligned_cols=122  Identities=30%  Similarity=0.342  Sum_probs=36.6

Q ss_pred             CCccEEEccCCCCceeccCcccc-CCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccc-CCCCCCCE
Q 036300           91 NSLDSLEFGSNPRLIGTIPTSID-YLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASI-GGLTKLLI  168 (269)
Q Consensus        91 ~~L~~L~l~~n~~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~  168 (269)
                      ..+++|+|++| .+.. + +.++ .+.+|+.|++++|.++ .+. .+..++.|++|++++|+++ .+.+.+ ..+++|++
T Consensus        19 ~~~~~L~L~~n-~I~~-I-e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~   92 (175)
T PF14580_consen   19 VKLRELNLRGN-QIST-I-ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQE   92 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--E
T ss_pred             ccccccccccc-cccc-c-cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCE
Confidence            34566666666 3433 2 2344 4566666666666666 232 3555666666666666666 343333 34666666


Q ss_pred             EEccCCcCCchh-hhhhcCcccCCEEeCcCCcCCCcC---chhhcCCCCCCEEE
Q 036300          169 FDLSRNNLSGSM-LLTLGKLARLLKLDLSYNNLQEKI---PKEIGNLHNVTFLD  218 (269)
Q Consensus       169 L~l~~n~l~~~~-~~~~~~l~~L~~L~ls~n~l~~~~---p~~~~~l~~L~~L~  218 (269)
                      |++++|++...- -..+..+++|+.|++.+|.+....   ...+..+|+|+.||
T Consensus        93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen   93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred             EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence            666666664311 134455666666666666665321   11234566666665

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.31  E-value=1.4e-12  Score=116.15  Aligned_cols=167  Identities=32%  Similarity=0.456  Sum_probs=97.1

Q ss_pred             CCccEEEccCCCCceeccCccccCCC-CCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEE
Q 036300           91 NSLDSLEFGSNPRLIGTIPTSIDYLK-NLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIF  169 (269)
Q Consensus        91 ~~L~~L~l~~n~~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  169 (269)
                      +.++.|++.+| .+ ..+++....++ +|+.|++++|.+. .+|..+..+++|+.|++++|+++ .+|......+.|+.|
T Consensus       116 ~~l~~L~l~~n-~i-~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L  191 (394)
T COG4886         116 TNLTSLDLDNN-NI-TDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNL  191 (394)
T ss_pred             cceeEEecCCc-cc-ccCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhe
Confidence            45667777666 33 33455555553 6777777777766 45555667777777777777776 555544466667777


Q ss_pred             EccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCC
Q 036300          170 DLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIF  249 (269)
Q Consensus       170 ~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  249 (269)
                      ++++|+++ .+|........|+++.+++|+.. ..+..+..+.++..+.+.+|++. ..+..++.++++++|++++|.+ 
T Consensus       192 ~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i-  267 (394)
T COG4886         192 DLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQI-  267 (394)
T ss_pred             eccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceeccccccc-
Confidence            77777766 44554444455666666666433 23444555555555555555554 2244555555566666666666 


Q ss_pred             CCCCCccccccCcCCceec
Q 036300          250 GGGLNGIRWENLQNLEIWI  268 (269)
Q Consensus       250 ~~~~p~~~~~~l~~L~~L~  268 (269)
                       ..++.  +..+.+|+.|+
T Consensus       268 -~~i~~--~~~~~~l~~L~  283 (394)
T COG4886         268 -SSISS--LGSLTNLRELD  283 (394)
T ss_pred             -ccccc--ccccCccCEEe
Confidence             33432  44555555544

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.25  E-value=4.8e-12  Score=112.76  Aligned_cols=173  Identities=32%  Similarity=0.504  Sum_probs=140.6

Q ss_pred             cCCCCCCCcccCchhHHhhcC-CccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccC
Q 036300           71 FKPPLQSPIEIPSSNWQKLAN-SLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAG  149 (269)
Q Consensus        71 ~~~~~~~~~~lp~~~~~~l~~-~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~  149 (269)
                      +....+.+..||...  .+.. +|+.|++++| .+ ..+|..+..+++|+.|++++|++. .+|...+.++.|+.|++++
T Consensus       121 L~l~~n~i~~i~~~~--~~~~~nL~~L~l~~N-~i-~~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~  195 (394)
T COG4886         121 LDLDNNNITDIPPLI--GLLKSNLKELDLSDN-KI-ESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSG  195 (394)
T ss_pred             EecCCcccccCcccc--ccchhhccccccccc-ch-hhhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccC
Confidence            333446677888765  2343 8999999999 44 446667899999999999999999 6777766899999999999


Q ss_pred             CcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcch
Q 036300          150 NQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLV  229 (269)
Q Consensus       150 n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~  229 (269)
                      |+++ .+|........|+++.+++|.+. ..+..+.++..+..+.+..|++.. ++..++.++++++|++++|.++.. +
T Consensus       196 N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~~i-~  271 (394)
T COG4886         196 NKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQISSI-S  271 (394)
T ss_pred             Cccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccchhccccccceecccccccccc-c
Confidence            9999 78876666677999999999654 566778888999999999999874 467788999999999999999844 3


Q ss_pred             hhhhcCCCCCeEEccCCCCCCCCCC
Q 036300          230 GSIEEMVSLKEMVVSNNPIFGGGLN  254 (269)
Q Consensus       230 ~~~~~l~~L~~L~l~~N~l~~~~~p  254 (269)
                      . ++.+.+++.|++++|.+ ....+
T Consensus       272 ~-~~~~~~l~~L~~s~n~~-~~~~~  294 (394)
T COG4886         272 S-LGSLTNLRELDLSGNSL-SNALP  294 (394)
T ss_pred             c-ccccCccCEEeccCccc-cccch
Confidence            3 88899999999999988 44333

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.21  E-value=1.6e-12  Score=112.11  Aligned_cols=175  Identities=19%  Similarity=0.203  Sum_probs=122.4

Q ss_pred             CCCcccCchhHHhhcCCccEEEccCCCCceec--cCccccCCCCCCEEEcccCCCCCCCCCC-CCCCCCCCEEEccCCcC
Q 036300           76 QSPIEIPSSNWQKLANSLDSLEFGSNPRLIGT--IPTSIDYLKNLQSLVLLEKGLTGKLPIE-PSKLVNLRRLALAGNQI  152 (269)
Q Consensus        76 ~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~--~p~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l  152 (269)
                      ..++..+..-..+.+++++.|||+.| -+...  +-....+||+|+.|+++.|++.-..... -..+++|+.|.++.|.+
T Consensus       131 ~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGl  209 (505)
T KOG3207|consen  131 YRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGL  209 (505)
T ss_pred             ccccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCC
Confidence            33444443222334699999999999 55542  3445678999999999999987322222 23578899999999999


Q ss_pred             CCC-CccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCc--hhhcCCCCCCEEEccCCccCCc-c
Q 036300          153 NGQ-IPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIP--KEIGNLHNVTFLDLRSNNFLGG-L  228 (269)
Q Consensus       153 ~~~-~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p--~~~~~l~~L~~L~L~~N~l~~~-~  228 (269)
                      +.. +...+..+|+|+.|++..|.....-......+..|+.|+|++|++-+ .+  ...+.++.|+.|+++.+.+... .
T Consensus       210 s~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~Lnls~tgi~si~~  288 (505)
T KOG3207|consen  210 SWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQLNLSSTGIASIAE  288 (505)
T ss_pred             CHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhhhhccccCcchhcC
Confidence            843 23345678999999999995322222334456789999999998874 33  4467889999999999988752 2


Q ss_pred             hhh-----hhcCCCCCeEEccCCCCCCCCCC
Q 036300          229 VGS-----IEEMVSLKEMVVSNNPIFGGGLN  254 (269)
Q Consensus       229 ~~~-----~~~l~~L~~L~l~~N~l~~~~~p  254 (269)
                      |+.     ...+++|++|++..|++  .+.+
T Consensus       289 ~d~~s~~kt~~f~kL~~L~i~~N~I--~~w~  317 (505)
T KOG3207|consen  289 PDVESLDKTHTFPKLEYLNISENNI--RDWR  317 (505)
T ss_pred             CCccchhhhcccccceeeecccCcc--cccc
Confidence            322     34578999999999999  4444

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.18  E-value=4.5e-12  Score=104.94  Aligned_cols=121  Identities=31%  Similarity=0.278  Sum_probs=69.1

Q ss_pred             CCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEc
Q 036300          140 VNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDL  219 (269)
Q Consensus       140 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L  219 (269)
                      +.|+++||++|.|+ .+.++..-+|.++.|++++|.+.. +. .+..+++|+.||+|+|.++. +..+-.++-+++.|.|
T Consensus       284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-v~-nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-VQ-NLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKL  359 (490)
T ss_pred             hhhhhccccccchh-hhhhhhhhccceeEEeccccceee-eh-hhhhcccceEeecccchhHh-hhhhHhhhcCEeeeeh
Confidence            34666777777776 566666666777777777777652 22 25566677777777776653 3333334556666666


Q ss_pred             cCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCcee
Q 036300          220 RSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIW  267 (269)
Q Consensus       220 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L  267 (269)
                      ++|.+..  ...+..+-+|..||+++|+| ..--....++++|.|+.+
T Consensus       360 a~N~iE~--LSGL~KLYSLvnLDl~~N~I-e~ldeV~~IG~LPCLE~l  404 (490)
T KOG1259|consen  360 AQNKIET--LSGLRKLYSLVNLDLSSNQI-EELDEVNHIGNLPCLETL  404 (490)
T ss_pred             hhhhHhh--hhhhHhhhhheeccccccch-hhHHHhcccccccHHHHH
Confidence            6666532  22344555666666666666 222122245555555544

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.14  E-value=4.2e-12  Score=105.08  Aligned_cols=129  Identities=26%  Similarity=0.343  Sum_probs=103.6

Q ss_pred             CCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEE
Q 036300          114 YLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKL  193 (269)
Q Consensus       114 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  193 (269)
                      ..+.|+.+||++|.|+ .+.++..-+++++.|++++|.++ .+.. ++.+++|+.|++++|.++ .+..+-.++.++++|
T Consensus       282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL  357 (490)
T KOG1259|consen  282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTL  357 (490)
T ss_pred             hHhhhhhccccccchh-hhhhhhhhccceeEEecccccee-eehh-hhhcccceEeecccchhH-hhhhhHhhhcCEeee
Confidence            3457888999999988 77888888899999999999988 4443 788899999999999887 445555577888999


Q ss_pred             eCcCCcCCCcCchhhcCCCCCCEEEccCCccCC-cchhhhhcCCCCCeEEccCCCC
Q 036300          194 DLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLG-GLVGSIEEMVSLKEMVVSNNPI  248 (269)
Q Consensus       194 ~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l  248 (269)
                      .+++|.+.. + ..+.++-+|..||+++|+|.. ..-..+++++-|+.+.+.+|++
T Consensus       358 ~La~N~iE~-L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl  411 (490)
T KOG1259|consen  358 KLAQNKIET-L-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL  411 (490)
T ss_pred             ehhhhhHhh-h-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence            999998864 2 456777889999999999874 2234678889999999999998

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.99  E-value=3e-10  Score=73.54  Aligned_cols=61  Identities=34%  Similarity=0.431  Sum_probs=38.1

Q ss_pred             ccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCC
Q 036300          188 ARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPI  248 (269)
Q Consensus       188 ~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  248 (269)
                      ++|++|++++|+++...+..|..+++|++|++++|.++...+..|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            3456666666666654445566666666666666666655556666666666666666653

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.98  E-value=4e-10  Score=72.91  Aligned_cols=57  Identities=37%  Similarity=0.424  Sum_probs=22.8

Q ss_pred             CCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCC
Q 036300          118 LQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRN  174 (269)
Q Consensus       118 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n  174 (269)
                      |++|++++|+++...+..|.++++|++|++++|.++...|..|.++++|++|++++|
T Consensus         3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred             CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence            344444444444222233444444444444444443222233444444444444444

...

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.94  E-value=1.3e-10  Score=100.45  Aligned_cols=177  Identities=19%  Similarity=0.162  Sum_probs=126.5

Q ss_pred             CCccEEEccCCCCceeccC--ccccCCCCCCEEEcccCCCCCCCC--CCCCCCCCCCEEEccCCcCCCCCccc-cCCCCC
Q 036300           91 NSLDSLEFGSNPRLIGTIP--TSIDYLKNLQSLVLLEKGLTGKLP--IEPSKLVNLRRLALAGNQINGQIPAS-IGGLTK  165 (269)
Q Consensus        91 ~~L~~L~l~~n~~l~~~~p--~~l~~l~~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~  165 (269)
                      ..|+.+.|.++ .+. ..+  .-...|++++.|+|+.|-+....+  .-...+++|+.|+++.|.+.-..... -..++.
T Consensus       121 kkL~~IsLdn~-~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  121 KKLREISLDNY-RVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             HhhhheeecCc-ccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            67889999887 333 233  245678999999999997764222  22467899999999999986322221 135678


Q ss_pred             CCEEEccCCcCCch-hhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcc-hhhhhcCCCCCeEEc
Q 036300          166 LLIFDLSRNNLSGS-MLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGL-VGSIEEMVSLKEMVV  243 (269)
Q Consensus       166 L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l  243 (269)
                      |+.|.++.|.++.. +......+|+|+.|++.+|...........-+..|+.|||++|++.... -...+.++.|+.|++
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl  278 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL  278 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence            99999999999853 3344567899999999999532222233445678999999999987532 246788999999999


Q ss_pred             cCCCCCCCCCCcc----ccccCcCCceecC
Q 036300          244 SNNPIFGGGLNGI----RWENLQNLEIWIF  269 (269)
Q Consensus       244 ~~N~l~~~~~p~~----~~~~l~~L~~L~l  269 (269)
                      +.+.+++-..|+.    ....+++|++|++
T Consensus       279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i  308 (505)
T KOG3207|consen  279 SSTGIASIAEPDVESLDKTHTFPKLEYLNI  308 (505)
T ss_pred             cccCcchhcCCCccchhhhcccccceeeec
Confidence            9999955555541    1367888888864

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.77  E-value=2.1e-09  Score=90.70  Aligned_cols=110  Identities=18%  Similarity=0.268  Sum_probs=59.9

Q ss_pred             CCCCCEEEccCCcCCCC----CccccCCCCCCCEEEccCCcCCch----hhhhhcCcccCCEEeCcCCcCCCcCchhh--
Q 036300          139 LVNLRRLALAGNQINGQ----IPASIGGLTKLLIFDLSRNNLSGS----MLLTLGKLARLLKLDLSYNNLQEKIPKEI--  208 (269)
Q Consensus       139 l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~ls~n~l~~~~p~~~--  208 (269)
                      .+.|+.+.+..|.|...    +...+..+++|+.|++.+|.++..    +...+..++.|+.|++++|.+...-...+  
T Consensus       184 ~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~  263 (382)
T KOG1909|consen  184 HPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVD  263 (382)
T ss_pred             ccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHH
Confidence            34455555555544311    123345566666666666666532    23345556666777777766654332222  


Q ss_pred             ---cCCCCCCEEEccCCccCCc----chhhhhcCCCCCeEEccCCCC
Q 036300          209 ---GNLHNVTFLDLRSNNFLGG----LVGSIEEMVSLKEMVVSNNPI  248 (269)
Q Consensus       209 ---~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~N~l  248 (269)
                         ...++|+.|.+.+|.|+..    +...+...+.|..|+|++|.+
T Consensus       264 al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  264 ALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence               2356677777777766642    222344456677777777776

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.70  E-value=7.4e-09  Score=99.94  Aligned_cols=131  Identities=27%  Similarity=0.329  Sum_probs=94.2

Q ss_pred             CcccccccccCCCCCC--CcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCC
Q 036300           62 SLVCSQCKIFKPPLQS--PIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKL  139 (269)
Q Consensus        62 ~~~~~~l~~~~~~~~~--~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l  139 (269)
                      ...|..+.++-...+.  ...++..+|..+ +.|++|||++| .-.+.+|..++.|-+|++|+++++.+. .+|..+.++
T Consensus       541 ~~~~~~L~tLll~~n~~~l~~is~~ff~~m-~~LrVLDLs~~-~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~L  617 (889)
T KOG4658|consen  541 SSENPKLRTLLLQRNSDWLLEISGEFFRSL-PLLRVLDLSGN-SSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNL  617 (889)
T ss_pred             CCCCCccceEEEeecchhhhhcCHHHHhhC-cceEEEECCCC-CccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHH
Confidence            3455555554444443  678888888776 88999999988 566778999999999999999999988 789899999


Q ss_pred             CCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCC--chhhhhhcCcccCCEEeC
Q 036300          140 VNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLS--GSMLLTLGKLARLLKLDL  195 (269)
Q Consensus       140 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l  195 (269)
                      .+|.+|++..+.....+|.....+++|++|.+......  ...-..+.++.+|+.+..
T Consensus       618 k~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~  675 (889)
T KOG4658|consen  618 KKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI  675 (889)
T ss_pred             HhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence            99999999888765556666677889999888765422  222233444455554444

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.70  E-value=7.8e-09  Score=87.32  Aligned_cols=178  Identities=17%  Similarity=0.155  Sum_probs=122.8

Q ss_pred             cCCccEEEccCCCCceeccCc----cccCCCCCCEEEcccCCCCCCC-------------CCCCCCCCCCCEEEccCCcC
Q 036300           90 ANSLDSLEFGSNPRLIGTIPT----SIDYLKNLQSLVLLEKGLTGKL-------------PIEPSKLVNLRRLALAGNQI  152 (269)
Q Consensus        90 ~~~L~~L~l~~n~~l~~~~p~----~l~~l~~L~~L~L~~n~l~~~~-------------p~~~~~l~~L~~L~L~~n~l  152 (269)
                      ++.|++|+||.| .+....++    -+..+..|++|+|.+|++...-             -....+-++|+++...+|++
T Consensus        91 ~~~L~~ldLSDN-A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl  169 (382)
T KOG1909|consen   91 CPKLQKLDLSDN-AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL  169 (382)
T ss_pred             CCceeEeecccc-ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence            368999999999 66655444    3456788999999999886211             11234557899999999988


Q ss_pred             CCC----CccccCCCCCCCEEEccCCcCCc----hhhhhhcCcccCCEEeCcCCcCCCc----CchhhcCCCCCCEEEcc
Q 036300          153 NGQ----IPASIGGLTKLLIFDLSRNNLSG----SMLLTLGKLARLLKLDLSYNNLQEK----IPKEIGNLHNVTFLDLR  220 (269)
Q Consensus       153 ~~~----~p~~l~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~L~  220 (269)
                      ...    +...|...+.|+.+.+..|.+..    .+...+..+++|+.||+.+|-|+..    +...+..+++|+.|+++
T Consensus       170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~  249 (382)
T KOG1909|consen  170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG  249 (382)
T ss_pred             ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence            632    23456777899999999998852    2345677889999999999988743    34556788899999999


Q ss_pred             CCccCCcchh----hh-hcCCCCCeEEccCCCCCCCCCCc--cccccCcCCceec
Q 036300          221 SNNFLGGLVG----SI-EEMVSLKEMVVSNNPIFGGGLNG--IRWENLQNLEIWI  268 (269)
Q Consensus       221 ~N~l~~~~~~----~~-~~l~~L~~L~l~~N~l~~~~~p~--~~~~~l~~L~~L~  268 (269)
                      .|.+...-..    .+ ...++|+.+.+.+|.++.+..-.  ..+...|.|+.|+
T Consensus       250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLn  304 (382)
T KOG1909|consen  250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLN  304 (382)
T ss_pred             ccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhc
Confidence            9988753322    22 23688999999999883332111  1233355555554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.69  E-value=6.3e-09  Score=100.41  Aligned_cols=128  Identities=28%  Similarity=0.339  Sum_probs=96.2

Q ss_pred             CCccEEEccCCCC-ceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEE
Q 036300           91 NSLDSLEFGSNPR-LIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIF  169 (269)
Q Consensus        91 ~~L~~L~l~~n~~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  169 (269)
                      +.|++|-+..|.. +.......|..|+.|+.|||++|.-.+.+|..++++-+|++|+++++.++ .+|..+.++..|.+|
T Consensus       545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L  623 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL  623 (889)
T ss_pred             CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence            5788888888821 33333345788999999999988877789999999999999999999998 899999999999999


Q ss_pred             EccCCcCCchhhhhhcCcccCCEEeCcCCcCC--CcCchhhcCCCCCCEEEc
Q 036300          170 DLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQ--EKIPKEIGNLHNVTFLDL  219 (269)
Q Consensus       170 ~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~--~~~p~~~~~l~~L~~L~L  219 (269)
                      ++..+.....+|.....+.+|++|.+..-...  ...-..+..+.+|+.+..
T Consensus       624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~  675 (889)
T KOG4658|consen  624 NLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI  675 (889)
T ss_pred             ccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence            99988765556666667899999988765422  122233445555555554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.63  E-value=1.1e-09  Score=100.36  Aligned_cols=101  Identities=29%  Similarity=0.351  Sum_probs=47.5

Q ss_pred             CCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccC
Q 036300          142 LRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRS  221 (269)
Q Consensus       142 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~  221 (269)
                      |.+.+.+.|.++ .+..++.-++.|+.|++++|+++...  .+..++.|++||+++|++. .+|..-..-.+|+.|.+++
T Consensus       166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrn  241 (1096)
T KOG1859|consen  166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRN  241 (1096)
T ss_pred             HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhhheeeeecc
Confidence            444455555554 44444555555555555555554221  4445555555555555554 2332111111255555555


Q ss_pred             CccCCcchhhhhcCCCCCeEEccCCCC
Q 036300          222 NNFLGGLVGSIEEMVSLKEMVVSNNPI  248 (269)
Q Consensus       222 N~l~~~~~~~~~~l~~L~~L~l~~N~l  248 (269)
                      |.++..  ..+.++.+|+.||+++|-+
T Consensus       242 N~l~tL--~gie~LksL~~LDlsyNll  266 (1096)
T KOG1859|consen  242 NALTTL--RGIENLKSLYGLDLSYNLL  266 (1096)
T ss_pred             cHHHhh--hhHHhhhhhhccchhHhhh
Confidence            554421  2344455555555555544

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.62  E-value=6.9e-10  Score=91.94  Aligned_cols=177  Identities=16%  Similarity=0.121  Sum_probs=119.9

Q ss_pred             CCccEEEccCCCCcee-ccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCc-CCCC-CccccCCCCCCC
Q 036300           91 NSLDSLEFGSNPRLIG-TIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQ-INGQ-IPASIGGLTKLL  167 (269)
Q Consensus        91 ~~L~~L~l~~n~~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~-~p~~l~~l~~L~  167 (269)
                      ..|++|||++. .++- .+...++++.+|+.|.+.++++.+.+-..+..-.+|+.|+++.+. ++.. +--.+.+|+.|.
T Consensus       185 sRlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~  263 (419)
T KOG2120|consen  185 SRLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD  263 (419)
T ss_pred             hhhHHhhcchh-heeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence            56899999987 5543 344467788999999999999988777778888999999999875 4411 112357888999


Q ss_pred             EEEccCCcCCchhh-hhhcC-cccCCEEeCcCCcCC---CcCchhhcCCCCCCEEEccCCc-cCCcchhhhhcCCCCCeE
Q 036300          168 IFDLSRNNLSGSML-LTLGK-LARLLKLDLSYNNLQ---EKIPKEIGNLHNVTFLDLRSNN-FLGGLVGSIEEMVSLKEM  241 (269)
Q Consensus       168 ~L~l~~n~l~~~~~-~~~~~-l~~L~~L~ls~n~l~---~~~p~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L  241 (269)
                      .|+++.|.+....- ..+.. -++|+.|+++++.-.   ..+..-...+++|.+|||+.|. ++......|.+++.|++|
T Consensus       264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l  343 (419)
T KOG2120|consen  264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL  343 (419)
T ss_pred             hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence            99999997764322 11211 156777888876321   1222233577888888888763 555555667778888888


Q ss_pred             EccCCCCCCCCCCccccccCcCCceecC
Q 036300          242 VVSNNPIFGGGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       242 ~l~~N~l~~~~~p~~~~~~l~~L~~L~l  269 (269)
                      .++.|.......- ..+...|.|.+|++
T Consensus       344 SlsRCY~i~p~~~-~~l~s~psl~yLdv  370 (419)
T KOG2120|consen  344 SLSRCYDIIPETL-LELNSKPSLVYLDV  370 (419)
T ss_pred             ehhhhcCCChHHe-eeeccCcceEEEEe
Confidence            8888864111111 25677788887763

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.58  E-value=4.5e-10  Score=102.76  Aligned_cols=125  Identities=25%  Similarity=0.257  Sum_probs=83.9

Q ss_pred             CCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhh-hhcCcccCCEEeC
Q 036300          117 NLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLL-TLGKLARLLKLDL  195 (269)
Q Consensus       117 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l  195 (269)
                      +|...++++|.+. ....++.-++.|+.|+|++|+++ ... .+..+++|++||+++|.+. .+|. ....+. |+.|.+
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~l  239 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNL  239 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hhH-HHHhcccccccccccchhc-cccccchhhhh-heeeee
Confidence            3555566666666 55566667777888888888877 333 6677888888888888877 3343 222333 778888


Q ss_pred             cCCcCCCcCchhhcCCCCCCEEEccCCccCC-cchhhhhcCCCCCeEEccCCCC
Q 036300          196 SYNNLQEKIPKEIGNLHNVTFLDLRSNNFLG-GLVGSIEEMVSLKEMVVSNNPI  248 (269)
Q Consensus       196 s~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l  248 (269)
                      ++|.++..  ..+.++.+|+.||++.|-+.+ .-...+..+..|+.|.|.||++
T Consensus       240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             cccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            88877632  446777788888888887765 2223455566777788888877

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.57  E-value=7.6e-09  Score=92.83  Aligned_cols=104  Identities=33%  Similarity=0.380  Sum_probs=57.7

Q ss_pred             CCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEE
Q 036300           91 NSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFD  170 (269)
Q Consensus        91 ~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  170 (269)
                      ..|+.|++.+| .+.. +...+..+++|++|++++|.|+...  .+..++.|+.|++.+|.++ .+. .+..++.|+.++
T Consensus        95 ~~l~~l~l~~n-~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~-~~~-~~~~l~~L~~l~  168 (414)
T KOG0531|consen   95 KSLEALDLYDN-KIEK-IENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLIS-DIS-GLESLKSLKLLD  168 (414)
T ss_pred             cceeeeecccc-chhh-cccchhhhhcchheecccccccccc--chhhccchhhheeccCcch-hcc-CCccchhhhccc
Confidence            56666666666 3433 2222555666666666666666322  2445555666666666665 332 234466666666


Q ss_pred             ccCCcCCchhh-hhhcCcccCCEEeCcCCcCC
Q 036300          171 LSRNNLSGSML-LTLGKLARLLKLDLSYNNLQ  201 (269)
Q Consensus       171 l~~n~l~~~~~-~~~~~l~~L~~L~ls~n~l~  201 (269)
                      +++|.+....+ . ...+.+++.+++.+|.+.
T Consensus       169 l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  169 LSYNRIVDIENDE-LSELISLEELDLGGNSIR  199 (414)
T ss_pred             CCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence            66666653322 1 345556666666666554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.55  E-value=6.3e-08  Score=80.49  Aligned_cols=181  Identities=20%  Similarity=0.259  Sum_probs=120.8

Q ss_pred             HHhhcCCccEEEccCCCCcee--ccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCC-CccccCC
Q 036300           86 WQKLANSLDSLEFGSNPRLIG--TIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQ-IPASIGG  162 (269)
Q Consensus        86 ~~~l~~~L~~L~l~~n~~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~l~~  162 (269)
                      |...+..++.+||.+| .++.  ++...+.+||.|+.|+++.|.+...+...-....+|++|-|.+..+... ....+..
T Consensus        66 ~~~~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~  144 (418)
T KOG2982|consen   66 FGSSVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDD  144 (418)
T ss_pred             HHHHhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhc
Confidence            4455689999999999 6764  4556678999999999999998854443324667899999999887644 3345577


Q ss_pred             CCCCCEEEccCCcCCchh----------hh-------------------hhcCcccCCEEeCcCCcCCCcC-chhhcCCC
Q 036300          163 LTKLLIFDLSRNNLSGSM----------LL-------------------TLGKLARLLKLDLSYNNLQEKI-PKEIGNLH  212 (269)
Q Consensus       163 l~~L~~L~l~~n~l~~~~----------~~-------------------~~~~l~~L~~L~ls~n~l~~~~-p~~~~~l~  212 (269)
                      +|.++.|+++.|.+....          |.                   .-.-++++..+-+..|.+...- -+.+..++
T Consensus       145 lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p  224 (418)
T KOG2982|consen  145 LPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFP  224 (418)
T ss_pred             chhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCC
Confidence            888999999888543110          00                   0012355555556666554321 13345667


Q ss_pred             CCCEEEccCCccCCc-chhhhhcCCCCCeEEccCCCCCCCCCCc-----cccccCcCCceec
Q 036300          213 NVTFLDLRSNNFLGG-LVGSIEEMVSLKEMVVSNNPIFGGGLNG-----IRWENLQNLEIWI  268 (269)
Q Consensus       213 ~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~p~-----~~~~~l~~L~~L~  268 (269)
                      .+..|+|+.|+|-.. --+.+.+++.|+.|.+..|++ .+.+..     -.++.+++++.|+
T Consensus       225 ~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl-~d~l~~~err~llIaRL~~v~vLN  285 (418)
T KOG2982|consen  225 SLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPL-SDPLRGGERRFLLIARLTKVQVLN  285 (418)
T ss_pred             cchhhhhcccccccHHHHHHHcCCchhheeeccCCcc-cccccCCcceEEEEeeccceEEec
Confidence            777888888888652 235677888999999999988 444332     1455666666553

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.52  E-value=1.4e-07  Score=56.23  Aligned_cols=36  Identities=31%  Similarity=0.623  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHhcccC------CCCCCCCCCCCCCCCCCCCceEee
Q 036300            3 RKEKEALYSTIQGFVG------KWWNGSDLYPDPFGRTGLQGVSCD   42 (269)
Q Consensus         3 ~~~~~~l~~~~~~~~~------~~W~~~~~~~~~C~~~~~~gv~C~   42 (269)
                      ++|++||++||.++..      .+|+... ..+||.|.   ||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~-~~~~C~W~---GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWNPSS-DSDPCSWS---GVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT--TT---S-CCCST---TEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCCCcC-CCCCeeec---cEEeC
Confidence            6899999999999984      5798763 24999998   99996

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.42  E-value=1.7e-08  Score=74.75  Aligned_cols=133  Identities=22%  Similarity=0.268  Sum_probs=95.1

Q ss_pred             CCCCEEEcccCCCCCCCCCC---CCCCCCCCEEEccCCcCCCCCccccC-CCCCCCEEEccCCcCCchhhhhhcCcccCC
Q 036300          116 KNLQSLVLLEKGLTGKLPIE---PSKLVNLRRLALAGNQINGQIPASIG-GLTKLLIFDLSRNNLSGSMLLTLGKLARLL  191 (269)
Q Consensus       116 ~~L~~L~L~~n~l~~~~p~~---~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  191 (269)
                      ..+..++|+.|++. .+++.   +.....|+.++|++|.+. .+|..|. .++.+++|++++|.++ .+|..+..++.|+
T Consensus        27 kE~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr  103 (177)
T KOG4579|consen   27 KELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALR  103 (177)
T ss_pred             HHhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhh
Confidence            34667788888776 34443   445566777899999998 6776664 4568889999999998 6777788899999


Q ss_pred             EEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCC
Q 036300          192 KLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLN  254 (269)
Q Consensus       192 ~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p  254 (269)
                      .++++.|.+. ..|+.+..+.++..|+..+|.+. .+|..+---...-..++.++++ .+.-+
T Consensus       104 ~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl-~~~~~  163 (177)
T KOG4579|consen  104 SLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPL-GDETK  163 (177)
T ss_pred             hcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcc-cccCc
Confidence            9999999887 46777777888888888888776 4444432223333445567777 55544

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.40  E-value=7.5e-09  Score=76.55  Aligned_cols=133  Identities=21%  Similarity=0.247  Sum_probs=97.1

Q ss_pred             CCccEEEccCCCCceeccCc---cccCCCCCCEEEcccCCCCCCCCCCCC-CCCCCCEEEccCCcCCCCCccccCCCCCC
Q 036300           91 NSLDSLEFGSNPRLIGTIPT---SIDYLKNLQSLVLLEKGLTGKLPIEPS-KLVNLRRLALAGNQINGQIPASIGGLTKL  166 (269)
Q Consensus        91 ~~L~~L~l~~n~~l~~~~p~---~l~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  166 (269)
                      ..+..++|+.|. + ..+++   .+.....|+..+|++|.+. ..|..|. ..+.+++|++++|.++ .+|..+..++.|
T Consensus        27 kE~h~ldLssc~-l-m~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aL  102 (177)
T KOG4579|consen   27 KELHFLDLSSCQ-L-MYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPAL  102 (177)
T ss_pred             HHhhhcccccch-h-hHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHh
Confidence            456778888883 3 33444   3445566777799999998 5666554 4558899999999999 889889999999


Q ss_pred             CEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcch
Q 036300          167 LIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLV  229 (269)
Q Consensus       167 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~  229 (269)
                      +.|+++.|.+. ..|..+..+.++-.|+..+|.+. .+|..+..-...-..++.++.+.+..+
T Consensus       103 r~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~  163 (177)
T KOG4579|consen  103 RSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETK  163 (177)
T ss_pred             hhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCc
Confidence            99999999998 66777777889999999999887 455444333333444455666665444

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.36  E-value=5.7e-08  Score=87.23  Aligned_cols=148  Identities=30%  Similarity=0.343  Sum_probs=109.2

Q ss_pred             CCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEE
Q 036300           91 NSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFD  170 (269)
Q Consensus        91 ~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  170 (269)
                      ..++.+.++.| .+.. +-..+..+++|+.|++.+|.+. .+...+..+++|++|++++|.|+.. . .+..++.|+.|+
T Consensus        72 ~~l~~l~l~~n-~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i-~-~l~~l~~L~~L~  146 (414)
T KOG0531|consen   72 TSLKELNLRQN-LIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKL-E-GLSTLTLLKELN  146 (414)
T ss_pred             HhHHhhccchh-hhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccc-c-chhhccchhhhe
Confidence            66778888888 4443 3345778899999999999998 3443377889999999999999833 2 356777799999


Q ss_pred             ccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCc-hhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCC
Q 036300          171 LSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIP-KEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPI  248 (269)
Q Consensus       171 l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  248 (269)
                      +++|.++.  ...+..++.|+.+++++|++...-+ . ...+.+++.+.+.+|.+...  ..+..+..+..+++..|.+
T Consensus       147 l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i  220 (414)
T KOG0531|consen  147 LSGNLISD--ISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKI  220 (414)
T ss_pred             eccCcchh--ccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccc
Confidence            99999873  2334557889999999999885433 1 46788899999999988632  2334445555568888887

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.15  E-value=3.2e-06  Score=50.48  Aligned_cols=36  Identities=33%  Similarity=0.514  Sum_probs=22.1

Q ss_pred             CCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCC
Q 036300          212 HNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPI  248 (269)
Q Consensus       212 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  248 (269)
                      ++|++|++++|+|+ .+|..++++++|++|++++|++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i   36 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPI   36 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCC
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCC
Confidence            35666677777666 3454566677777777777766

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.14  E-value=3.3e-06  Score=50.46  Aligned_cols=35  Identities=37%  Similarity=0.615  Sum_probs=13.5

Q ss_pred             CCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCC
Q 036300          142 LRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLS  177 (269)
Q Consensus       142 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~  177 (269)
                      |++|++++|+++ .+|..+.++++|++|++++|+++
T Consensus         3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            344444444444 33333344444444444444433

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.13  E-value=5.2e-06  Score=65.55  Aligned_cols=106  Identities=17%  Similarity=0.159  Sum_probs=68.3

Q ss_pred             CCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcC-chhhcCCCCCCEEE
Q 036300          140 VNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKI-PKEIGNLHNVTFLD  218 (269)
Q Consensus       140 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~-p~~~~~l~~L~~L~  218 (269)
                      .+...+||++|.+. .++ .|..++.|.+|.+++|+++...|.--..+++|+.|.+.+|++.... -..+..+++|++|.
T Consensus        42 d~~d~iDLtdNdl~-~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLR-KLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             cccceecccccchh-hcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence            45677888888776 333 4667778888888888887555544445577888888887765311 12345677777777


Q ss_pred             ccCCccCCcc---hhhhhcCCCCCeEEccCCC
Q 036300          219 LRSNNFLGGL---VGSIEEMVSLKEMVVSNNP  247 (269)
Q Consensus       219 L~~N~l~~~~---~~~~~~l~~L~~L~l~~N~  247 (269)
                      +-+|.++..-   ...+..+++|+.||.+.-.
T Consensus       120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             ecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            7777765421   2345567777777766543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.06  E-value=2.2e-07  Score=77.40  Aligned_cols=156  Identities=21%  Similarity=0.142  Sum_probs=112.2

Q ss_pred             cCCccEEEccCCCCceeccCccccCCCCCCEEEcccC-CCCCC-CCCCCCCCCCCCEEEccCCcCCCCCcc-ccCC-CCC
Q 036300           90 ANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEK-GLTGK-LPIEPSKLVNLRRLALAGNQINGQIPA-SIGG-LTK  165 (269)
Q Consensus        90 ~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~-l~~  165 (269)
                      +..|+.|.+.++ .+.+.+...+++-.+|+.|+++.+ +++.. ..--+.+++.|..|+++.|.++...-. .+.. -++
T Consensus       209 C~kLk~lSlEg~-~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~  287 (419)
T KOG2120|consen  209 CSKLKNLSLEGL-RLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISET  287 (419)
T ss_pred             HHhhhhcccccc-ccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchh
Confidence            688999999999 798888889999999999999986 33311 111257889999999999987633221 2222 256


Q ss_pred             CCEEEccCCcCC---chhhhhhcCcccCCEEeCcCCc-CCCcCchhhcCCCCCCEEEccCCccCCcchh---hhhcCCCC
Q 036300          166 LLIFDLSRNNLS---GSMLLTLGKLARLLKLDLSYNN-LQEKIPKEIGNLHNVTFLDLRSNNFLGGLVG---SIEEMVSL  238 (269)
Q Consensus       166 L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~ls~n~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L  238 (269)
                      |+.|+++++.-.   ..+.--...+++|..|||++|. ++......|.+++.|++|.++.|..  .+|.   .+...+.|
T Consensus       288 l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl  365 (419)
T KOG2120|consen  288 LTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSL  365 (419)
T ss_pred             hhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcce
Confidence            888899887421   1333345678999999999884 4444445677889999999999863  4454   34667899


Q ss_pred             CeEEccCCCC
Q 036300          239 KEMVVSNNPI  248 (269)
Q Consensus       239 ~~L~l~~N~l  248 (269)
                      .+|++-++-=
T Consensus       366 ~yLdv~g~vs  375 (419)
T KOG2120|consen  366 VYLDVFGCVS  375 (419)
T ss_pred             EEEEeccccC
Confidence            9999877643

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.03  E-value=2.2e-06  Score=81.10  Aligned_cols=151  Identities=20%  Similarity=0.321  Sum_probs=102.7

Q ss_pred             CCccEEEccCCCCceeccCcccc-CCCCCCEEEcccCCCCCC-CCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCE
Q 036300           91 NSLDSLEFGSNPRLIGTIPTSID-YLKNLQSLVLLEKGLTGK-LPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLI  168 (269)
Q Consensus        91 ~~L~~L~l~~n~~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  168 (269)
                      .+|++||+++...+...-|..++ .+|.|+.|.+.+-.+... .-....++++|..||+++++++ .+ ..++.+++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHH
Confidence            67899999887444444444444 579999999988766522 2233467889999999999988 43 56788899999


Q ss_pred             EEccCCcCCc-hhhhhhcCcccCCEEeCcCCcCCCcC--c----hhhcCCCCCCEEEccCCccCCcchhhh-hcCCCCCe
Q 036300          169 FDLSRNNLSG-SMLLTLGKLARLLKLDLSYNNLQEKI--P----KEIGNLHNVTFLDLRSNNFLGGLVGSI-EEMVSLKE  240 (269)
Q Consensus       169 L~l~~n~l~~-~~~~~~~~l~~L~~L~ls~n~l~~~~--p----~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~  240 (269)
                      |.+.+=.+.. ..-..+.++++|+.||+|........  .    +.-..+|+|+.||.+++.+...+-+.+ ...++|+.
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~  279 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ  279 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence            9888877753 22345668899999999987655321  1    112357889999999888776544433 34455655


Q ss_pred             EEc
Q 036300          241 MVV  243 (269)
Q Consensus       241 L~l  243 (269)
                      +.+
T Consensus       280 i~~  282 (699)
T KOG3665|consen  280 IAA  282 (699)
T ss_pred             hhh
Confidence            543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.99  E-value=1e-05  Score=63.88  Aligned_cols=127  Identities=21%  Similarity=0.166  Sum_probs=90.6

Q ss_pred             ccEEEccCCCCceeccCcccc-CCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEc
Q 036300           93 LDSLEFGSNPRLIGTIPTSID-YLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDL  171 (269)
Q Consensus        93 L~~L~l~~n~~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l  171 (269)
                      =+.+++++.+ +..  -..++ .+.+...++|++|.+. .+ ..|..++.|.+|.+.+|+|+..-|.--..+++|..|.+
T Consensus        21 e~e~~LR~lk-ip~--ienlg~~~d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~L   95 (233)
T KOG1644|consen   21 ERELDLRGLK-IPV--IENLGATLDQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLIL   95 (233)
T ss_pred             cccccccccc-ccc--hhhccccccccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEe
Confidence            4667777762 211  11222 2457788999999987 33 35778999999999999999555554456788999999


Q ss_pred             cCCcCCchh-hhhhcCcccCCEEeCcCCcCCCcC---chhhcCCCCCCEEEccCCcc
Q 036300          172 SRNNLSGSM-LLTLGKLARLLKLDLSYNNLQEKI---PKEIGNLHNVTFLDLRSNNF  224 (269)
Q Consensus       172 ~~n~l~~~~-~~~~~~l~~L~~L~ls~n~l~~~~---p~~~~~l~~L~~L~L~~N~l  224 (269)
                      .+|++.... -..+..+++|++|.+-+|.++..-   --.+..+++|+.||.+.=..
T Consensus        96 tnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~  152 (233)
T KOG1644|consen   96 TNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR  152 (233)
T ss_pred             cCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence            999986321 123567899999999999887421   12356889999999876543

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.97  E-value=2.7e-05  Score=68.79  Aligned_cols=112  Identities=19%  Similarity=0.297  Sum_probs=56.3

Q ss_pred             cCCccEEEccCCCCceeccCccccCCCCCCEEEcccC-CCCCCCCCCCCCCCCCCEEEccCCcCC--CCCccccCCCCCC
Q 036300           90 ANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEK-GLTGKLPIEPSKLVNLRRLALAGNQIN--GQIPASIGGLTKL  166 (269)
Q Consensus        90 ~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~--~~~p~~l~~l~~L  166 (269)
                      +.+|++|.+++|.. ...+|..+.  ++|++|++++| .+. .+|.      +|+.|++..+...  +.+|.      +|
T Consensus        71 P~sLtsL~Lsnc~n-LtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sLe~L~L~~n~~~~L~~LPs------sL  134 (426)
T PRK15386         71 PNELTEITIENCNN-LTTLPGSIP--EGLEKLTVCHCPEIS-GLPE------SVRSLEIKGSATDSIKNVPN------GL  134 (426)
T ss_pred             CCCCcEEEccCCCC-cccCCchhh--hhhhheEccCccccc-cccc------ccceEEeCCCCCcccccCcc------hH
Confidence            45677777777633 344554332  46777777776 333 4443      3555666555432  12332      34


Q ss_pred             CEEEccCCcCC--chhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCC
Q 036300          167 LIFDLSRNNLS--GSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSN  222 (269)
Q Consensus       167 ~~L~l~~n~l~--~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N  222 (269)
                      +.|.+.+++..  ...|..  -.++|++|++++|... ..|..+.  .+|+.|.++.+
T Consensus       135 k~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        135 TSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             hheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence            55555432211  011111  1146777777776654 2343332  46777776655

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.95  E-value=4.4e-05  Score=67.43  Aligned_cols=134  Identities=14%  Similarity=0.187  Sum_probs=86.6

Q ss_pred             cCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCC-cCCCCCccccCCCCCCCE
Q 036300           90 ANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGN-QINGQIPASIGGLTKLLI  168 (269)
Q Consensus        90 ~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~  168 (269)
                      ++.++.|++++| .+.. +|. +  .++|+.|.++++.--..+|..+  .++|+.|++++| .+. .+|.      .|+.
T Consensus        51 ~~~l~~L~Is~c-~L~s-LP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------sLe~  116 (426)
T PRK15386         51 ARASGRLYIKDC-DIES-LPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE------SVRS  116 (426)
T ss_pred             hcCCCEEEeCCC-CCcc-cCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc------ccce
Confidence            488999999999 5544 452 2  2469999999854434667655  368999999998 554 5664      4777


Q ss_pred             EEccCCcCCchhhhhhcCc-ccCCEEeCcCCcCC--CcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccC
Q 036300          169 FDLSRNNLSGSMLLTLGKL-ARLLKLDLSYNNLQ--EKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSN  245 (269)
Q Consensus       169 L~l~~n~l~~~~~~~~~~l-~~L~~L~ls~n~l~--~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  245 (269)
                      |++..+....     +..+ ++|+.|.+.+++..  ..+|..  -.++|++|++++|... ..|..+.  .+|++|.++.
T Consensus       117 L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~  186 (426)
T PRK15386        117 LEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHI  186 (426)
T ss_pred             EEeCCCCCcc-----cccCcchHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEecc
Confidence            7887765531     1222 35677777543311  111211  1258999999998865 3444444  6889999987


Q ss_pred             CC
Q 036300          246 NP  247 (269)
Q Consensus       246 N~  247 (269)
                      +.
T Consensus       187 n~  188 (426)
T PRK15386        187 EQ  188 (426)
T ss_pred             cc
Confidence            74

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.92  E-value=2.6e-06  Score=80.62  Aligned_cols=147  Identities=20%  Similarity=0.234  Sum_probs=101.9

Q ss_pred             CCCCEEEcccCCCCC-CCCCCC-CCCCCCCEEEccCCcCCC-CCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCE
Q 036300          116 KNLQSLVLLEKGLTG-KLPIEP-SKLVNLRRLALAGNQING-QIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLK  192 (269)
Q Consensus       116 ~~L~~L~L~~n~l~~-~~p~~~-~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  192 (269)
                      .+|++|++++...-. ..|..+ .-+|+|+.|.+++-.+.. .+-....++|+|..||+++.+++..  ..++.+++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            578999998865431 122223 347899999999877642 2334557889999999999999843  67888999999


Q ss_pred             EeCcCCcCCC-cCchhhcCCCCCCEEEccCCccCCcc--h----hhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCc
Q 036300          193 LDLSYNNLQE-KIPKEIGNLHNVTFLDLRSNNFLGGL--V----GSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLE  265 (269)
Q Consensus       193 L~ls~n~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~--~----~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~  265 (269)
                      |.+.+=.+.. ..-..+..+++|+.||+|..+.....  .    +.-..+++|+.||.+++.+ ...+-...+..-|+|+
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi-~~~~le~ll~sH~~L~  278 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI-NEEILEELLNSHPNLQ  278 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch-hHHHHHHHHHhCccHh
Confidence            9888766653 22245778999999999987755322  1    1224589999999999988 5554443444444444

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.91  E-value=1.4e-06  Score=72.63  Aligned_cols=176  Identities=17%  Similarity=0.113  Sum_probs=109.9

Q ss_pred             CCccEEEccCCCCceecc-Cccc-cCCCCCCEEEcccCCCCC--CCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCC
Q 036300           91 NSLDSLEFGSNPRLIGTI-PTSI-DYLKNLQSLVLLEKGLTG--KLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKL  166 (269)
Q Consensus        91 ~~L~~L~l~~n~~l~~~~-p~~l-~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  166 (269)
                      +.++.|.+.++ .+-..- -..| ...+.++.++|..|.++.  ++..-+.+++.|++|+++.|++...+...-....+|
T Consensus        45 ra~ellvln~~-~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl  123 (418)
T KOG2982|consen   45 RALELLVLNGS-IIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNL  123 (418)
T ss_pred             cchhhheecCC-CCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccce
Confidence            44556666665 332211 1122 245789999999999984  233345789999999999999874333221466789


Q ss_pred             CEEEccCCcCCch-hhhhhcCcccCCEEeCcCCcCCCc--Cchhh---------------------------cCCCCCCE
Q 036300          167 LIFDLSRNNLSGS-MLLTLGKLARLLKLDLSYNNLQEK--IPKEI---------------------------GNLHNVTF  216 (269)
Q Consensus       167 ~~L~l~~n~l~~~-~~~~~~~l~~L~~L~ls~n~l~~~--~p~~~---------------------------~~l~~L~~  216 (269)
                      ++|-+.+..+... ....+..+|.++.|+++.|.+...  -....                           .-++++..
T Consensus       124 ~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~s  203 (418)
T KOG2982|consen  124 RVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNS  203 (418)
T ss_pred             EEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchh
Confidence            9999988877643 334566788888998888843310  00000                           12355666


Q ss_pred             EEccCCccCCcch-hhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceec
Q 036300          217 LDLRSNNFLGGLV-GSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWI  268 (269)
Q Consensus       217 L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~  268 (269)
                      +.+..|.+...-. +....++.+.-|+|+.|+| ...-..+.+.+++.|..|+
T Consensus       204 v~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~i-dswasvD~Ln~f~~l~dlR  255 (418)
T KOG2982|consen  204 VFVCEGPLKTESSEKGSEPFPSLSCLNLGANNI-DSWASVDALNGFPQLVDLR  255 (418)
T ss_pred             eeeecCcccchhhcccCCCCCcchhhhhccccc-ccHHHHHHHcCCchhheee
Confidence            6666665543221 2344567777888999988 5544445677777777665

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.84  E-value=8.9e-05  Score=55.00  Aligned_cols=126  Identities=13%  Similarity=0.168  Sum_probs=51.1

Q ss_pred             cCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcccc
Q 036300           81 IPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASI  160 (269)
Q Consensus        81 lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l  160 (269)
                      |+...|... .+|+.+.+...  +...-...|..+++|+.+.+..+ +.......|.++++|+.+.+.+ .+...-...|
T Consensus         3 i~~~~F~~~-~~l~~i~~~~~--~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F   77 (129)
T PF13306_consen    3 IGNNAFYNC-SNLESITFPNT--IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAF   77 (129)
T ss_dssp             E-TTTTTT--TT--EEEETST----EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTT
T ss_pred             ECHHHHhCC-CCCCEEEECCC--eeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccc
Confidence            444444442 56777777533  33333445666667777777664 4433444566666677777754 3331223345


Q ss_pred             CCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCC
Q 036300          161 GGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNV  214 (269)
Q Consensus       161 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L  214 (269)
                      ..+++|+.+.+..+ +.......|.+. .|+.+.+.. .+.......|.++++|
T Consensus        78 ~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   78 SNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             TT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             cccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            55666666666554 432333445554 566665554 2222233444444443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.83  E-value=6e-06  Score=67.59  Aligned_cols=61  Identities=26%  Similarity=0.407  Sum_probs=25.0

Q ss_pred             CCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCC--cCCCCCccccCCCCCCCEEEccCCcC
Q 036300          114 YLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGN--QINGQIPASIGGLTKLLIFDLSRNNL  176 (269)
Q Consensus       114 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n--~l~~~~p~~l~~l~~L~~L~l~~n~l  176 (269)
                      .+..|+.|.+.+.+++.  -..+-.+++|+.|.++.|  ++++.++-....+|+|+++++++|++
T Consensus        41 ~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki  103 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI  103 (260)
T ss_pred             cccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence            33444444444444431  112333444444444444  33333333333334444444444444

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.79  E-value=7.5e-05  Score=55.41  Aligned_cols=84  Identities=13%  Similarity=0.114  Sum_probs=32.4

Q ss_pred             cccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccC
Q 036300          111 SIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARL  190 (269)
Q Consensus       111 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  190 (269)
                      .|..+++|+.+.+.. .+.......|.++++|+.+.+.++ +...-...|..+++|+.+.+.. .+.......|..+++|
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence            455555666666553 344333444555555666665553 3312223445554555555543 2221222334444444


Q ss_pred             CEEeCcC
Q 036300          191 LKLDLSY  197 (269)
Q Consensus       191 ~~L~ls~  197 (269)
                      +.+.+..
T Consensus        84 ~~i~~~~   90 (129)
T PF13306_consen   84 KNIDIPS   90 (129)
T ss_dssp             CEEEETT
T ss_pred             cccccCc
Confidence            4444433

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.78  E-value=3.7e-05  Score=63.56  Aligned_cols=157  Identities=16%  Similarity=0.111  Sum_probs=82.0

Q ss_pred             cCCccEEEccCCCCceeccCcc----ccCCCCCCEEEcccCCCCCCCCCCC-------------CCCCCCCEEEccCCcC
Q 036300           90 ANSLDSLEFGSNPRLIGTIPTS----IDYLKNLQSLVLLEKGLTGKLPIEP-------------SKLVNLRRLALAGNQI  152 (269)
Q Consensus        90 ~~~L~~L~l~~n~~l~~~~p~~----l~~l~~L~~L~L~~n~l~~~~p~~~-------------~~l~~L~~L~L~~n~l  152 (269)
                      |++|+.++||.| .+....|+.    +++-+.|.+|.+++|++.-....-+             .+-+.|+++....|++
T Consensus        91 cp~l~~v~LSDN-Afg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl  169 (388)
T COG5238          91 CPRLQKVDLSDN-AFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL  169 (388)
T ss_pred             CCcceeeecccc-ccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh
Confidence            467777777777 565555543    4455667777777776652111111             2345566666666665


Q ss_pred             CCCCcc-----ccCCCCCCCEEEccCCcCCchh-----hhhhcCcccCCEEeCcCCcCCCc----CchhhcCCCCCCEEE
Q 036300          153 NGQIPA-----SIGGLTKLLIFDLSRNNLSGSM-----LLTLGKLARLLKLDLSYNNLQEK----IPKEIGNLHNVTFLD  218 (269)
Q Consensus       153 ~~~~p~-----~l~~l~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~  218 (269)
                      . ..+.     .+..-..|+++.+..|.|.-..     -..+..+.+|+.||+.+|-++-.    +...+..++.|+.|.
T Consensus       170 e-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~  248 (388)
T COG5238         170 E-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELR  248 (388)
T ss_pred             c-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcc
Confidence            4 2221     1222245666666666654211     11223446666666666665532    223344556666666


Q ss_pred             ccCCccCCcchh----hh--hcCCCCCeEEccCCCC
Q 036300          219 LRSNNFLGGLVG----SI--EEMVSLKEMVVSNNPI  248 (269)
Q Consensus       219 L~~N~l~~~~~~----~~--~~l~~L~~L~l~~N~l  248 (269)
                      +..|-++..-..    .|  ...++|..|-..+|.+
T Consensus       249 lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~  284 (388)
T COG5238         249 LNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNER  284 (388)
T ss_pred             ccchhhccccHHHHHHHhhhhcCCCccccccchhhh
Confidence            666655432111    11  1235566666666655

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.77  E-value=1.9e-05  Score=65.21  Aligned_cols=156  Identities=21%  Similarity=0.244  Sum_probs=105.6

Q ss_pred             CCccEEEccCCCCcee----ccC-------ccccCCCCCCEEEcccCCCCCCCCCC----CCCCCCCCEEEccCCcCCCC
Q 036300           91 NSLDSLEFGSNPRLIG----TIP-------TSIDYLKNLQSLVLLEKGLTGKLPIE----PSKLVNLRRLALAGNQINGQ  155 (269)
Q Consensus        91 ~~L~~L~l~~n~~l~~----~~p-------~~l~~l~~L~~L~L~~n~l~~~~p~~----~~~l~~L~~L~L~~n~l~~~  155 (269)
                      ++|+..+++.-  ++|    .++       +.+.+||+|+..+||.|.+....|..    ++.-+.|++|.+++|.+.-.
T Consensus        58 ~~L~vvnfsd~--ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~  135 (388)
T COG5238          58 RNLRVVNFSDA--FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPI  135 (388)
T ss_pred             cceeEeehhhh--hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCcc
Confidence            56666666653  232    222       34667899999999999888666654    45667899999999987511


Q ss_pred             ----Cc---------cccCCCCCCCEEEccCCcCCchh----hhhhcCcccCCEEeCcCCcCCCcC-----chhhcCCCC
Q 036300          156 ----IP---------ASIGGLTKLLIFDLSRNNLSGSM----LLTLGKLARLLKLDLSYNNLQEKI-----PKEIGNLHN  213 (269)
Q Consensus       156 ----~p---------~~l~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~ls~n~l~~~~-----p~~~~~l~~  213 (269)
                          +.         ....+-|.|+++....|++..-.    ...+.....|+++.+..|.+.-..     -..+..+.+
T Consensus       136 aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~  215 (388)
T COG5238         136 AGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHS  215 (388)
T ss_pred             chhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCc
Confidence                11         11245578999999999885221    122333457889999999876321     123456789


Q ss_pred             CCEEEccCCccCCc----chhhhhcCCCCCeEEccCCCC
Q 036300          214 VTFLDLRSNNFLGG----LVGSIEEMVSLKEMVVSNNPI  248 (269)
Q Consensus       214 L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~N~l  248 (269)
                      |+.||++.|-++..    ....+..++.|+.|.+..|-+
T Consensus       216 LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCll  254 (388)
T COG5238         216 LEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLL  254 (388)
T ss_pred             ceeeeccccchhhhhHHHHHHHhcccchhhhccccchhh
Confidence            99999999988753    334556678899999999888

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.57  E-value=4.7e-05  Score=62.43  Aligned_cols=110  Identities=24%  Similarity=0.249  Sum_probs=74.7

Q ss_pred             CCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCC--cCCchhhhhhcCcccCCEEeCcCCcCCC--cCchh
Q 036300          132 LPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRN--NLSGSMLLTLGKLARLLKLDLSYNNLQE--KIPKE  207 (269)
Q Consensus       132 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~ls~n~l~~--~~p~~  207 (269)
                      +..-.-.+..|+.+.+.+..++ .+ ..+-.+++|++|.++.|  ++.+.++.....+++|+++++++|++..  .+ ..
T Consensus        35 ~~gl~d~~~~le~ls~~n~glt-t~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl-~p  111 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLT-TL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL-RP  111 (260)
T ss_pred             cccccccccchhhhhhhcccee-ec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc-ch
Confidence            3333445566777777777776 22 24567789999999999  5665555555667999999999998863  11 22


Q ss_pred             hcCCCCCCEEEccCCccCCc---chhhhhcCCCCCeEEcc
Q 036300          208 IGNLHNVTFLDLRSNNFLGG---LVGSIEEMVSLKEMVVS  244 (269)
Q Consensus       208 ~~~l~~L~~L~L~~N~l~~~---~~~~~~~l~~L~~L~l~  244 (269)
                      +..+.+|..|++.+|..+..   --..|.-+++|++||-.
T Consensus       112 l~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~  151 (260)
T KOG2739|consen  112 LKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC  151 (260)
T ss_pred             hhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence            45677788899988876652   12355667788777543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.20  E-value=2.3e-05  Score=65.01  Aligned_cols=82  Identities=24%  Similarity=0.244  Sum_probs=39.8

Q ss_pred             CCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCc-hhhcCCCCCCEE
Q 036300          139 LVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIP-KEIGNLHNVTFL  217 (269)
Q Consensus       139 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p-~~~~~l~~L~~L  217 (269)
                      +.+.+.|+..+|.+++.  .....++.|++|.|+-|+++..-|  +..+.+|++|+|..|.|.+.-. ..+.++++|+.|
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            34445555555555521  122445555666666665553222  3345555555555555543111 223455555555


Q ss_pred             EccCCcc
Q 036300          218 DLRSNNF  224 (269)
Q Consensus       218 ~L~~N~l  224 (269)
                      .|..|.=
T Consensus        94 WL~ENPC  100 (388)
T KOG2123|consen   94 WLDENPC  100 (388)
T ss_pred             hhccCCc
Confidence            5555543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.87  E-value=4.4e-05  Score=63.33  Aligned_cols=98  Identities=21%  Similarity=0.193  Sum_probs=63.9

Q ss_pred             CCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcc--ccCCCCCCCE
Q 036300           91 NSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPA--SIGGLTKLLI  168 (269)
Q Consensus        91 ~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~  168 (269)
                      .+++.|++-+| .+.+.  ....+|+.|+.|.|+-|.|+..-  .+..|++|++|+|..|.|. .+.+  -+.++|+|+.
T Consensus        19 ~~vkKLNcwg~-~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   19 ENVKKLNCWGC-GLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHhhhhcccCC-CccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhh
Confidence            45677777777 55543  23457788888888888877433  3667788888888888777 3333  3467778888


Q ss_pred             EEccCCcCCchhhh-----hhcCcccCCEEe
Q 036300          169 FDLSRNNLSGSMLL-----TLGKLARLLKLD  194 (269)
Q Consensus       169 L~l~~n~l~~~~~~-----~~~~l~~L~~L~  194 (269)
                      |.|..|...+..+.     .+..+|+|+.||
T Consensus        93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            88877766554432     344556666654

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.93  E-value=0.00083  Score=61.08  Aligned_cols=174  Identities=19%  Similarity=0.105  Sum_probs=102.3

Q ss_pred             cCCccEEEccCCCCceec-cCccccCCCCCCEEEcccC-CCCCCCC----CCCCCCCCCCEEEccCCc-CCCCCccccC-
Q 036300           90 ANSLDSLEFGSNPRLIGT-IPTSIDYLKNLQSLVLLEK-GLTGKLP----IEPSKLVNLRRLALAGNQ-INGQIPASIG-  161 (269)
Q Consensus        90 ~~~L~~L~l~~n~~l~~~-~p~~l~~l~~L~~L~L~~n-~l~~~~p----~~~~~l~~L~~L~L~~n~-l~~~~p~~l~-  161 (269)
                      .+.|+.|.+..+..+... +-+....+++|+.|+++++ ......+    .....+.+|+.++++.+. +++..-..+. 
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            477888888887433331 2345567788999998873 2211111    234556888899998887 5543333333 


Q ss_pred             CCCCCCEEEccCCc-CCchh-hhhhcCcccCCEEeCcCCcCCCc--CchhhcCCCCCCEEEccCCc----cC--------
Q 036300          162 GLTKLLIFDLSRNN-LSGSM-LLTLGKLARLLKLDLSYNNLQEK--IPKEIGNLHNVTFLDLRSNN----FL--------  225 (269)
Q Consensus       162 ~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~ls~n~l~~~--~p~~~~~l~~L~~L~L~~N~----l~--------  225 (269)
                      .+++|++|.+.++. +++.. ......++.|++|+++++.....  +.....++++++.|.+....    ++        
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~  346 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLL  346 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhh
Confidence            37889999877776 55432 23345678899999998865321  22223345555554433222    11        


Q ss_pred             -----CcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCC
Q 036300          226 -----GGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNL  264 (269)
Q Consensus       226 -----~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L  264 (269)
                           ......+..+++++.+.+..+.. ....-...+..++.|
T Consensus       347 ~~~~d~~~~~~~~~~~~l~~~~l~~~~~-~~~~~~~~l~gc~~l  389 (482)
T KOG1947|consen  347 TLTSDDLAELILRSCPKLTDLSLSYCGI-SDLGLELSLRGCPNL  389 (482)
T ss_pred             ccCchhHhHHHHhcCCCcchhhhhhhhc-cCcchHHHhcCCccc
Confidence                 11122445678888888888875 333212366677776

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.89  E-value=0.0042  Score=30.93  Aligned_cols=18  Identities=33%  Similarity=0.612  Sum_probs=8.3

Q ss_pred             CCEEEccCCccCCcchhhh
Q 036300          214 VTFLDLRSNNFLGGLVGSI  232 (269)
Q Consensus       214 L~~L~L~~N~l~~~~~~~~  232 (269)
                      |++|++++|+++ .+|..|
T Consensus         2 L~~Ldls~n~l~-~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSF   19 (22)
T ss_dssp             ESEEEETSSEES-EEGTTT
T ss_pred             ccEEECCCCcCE-eCChhh
Confidence            444555555544 344333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.78  E-value=0.0039  Score=31.05  Aligned_cols=11  Identities=36%  Similarity=0.661  Sum_probs=4.3

Q ss_pred             CEEEccCCcCC
Q 036300          143 RRLALAGNQIN  153 (269)
Q Consensus       143 ~~L~L~~n~l~  153 (269)
                      ++|++++|+++
T Consensus         3 ~~Ldls~n~l~   13 (22)
T PF00560_consen    3 EYLDLSGNNLT   13 (22)
T ss_dssp             SEEEETSSEES
T ss_pred             cEEECCCCcCE
Confidence            33334433333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.14  E-value=0.0074  Score=54.86  Aligned_cols=13  Identities=31%  Similarity=0.289  Sum_probs=6.0

Q ss_pred             CCCCCeEEccCCC
Q 036300          235 MVSLKEMVVSNNP  247 (269)
Q Consensus       235 l~~L~~L~l~~N~  247 (269)
                      ++.|++|+++++.
T Consensus       294 ~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  294 CPSLRELDLSGCH  306 (482)
T ss_pred             cCcccEEeeecCc
Confidence            4444444444443

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=95.02  E-value=0.00045  Score=56.06  Aligned_cols=94  Identities=20%  Similarity=0.225  Sum_probs=75.9

Q ss_pred             cccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcc
Q 036300           79 IEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPA  158 (269)
Q Consensus        79 ~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~  158 (269)
                      .+||......+ ...+.||++.| .+.. .-..|+-++.|..|+++.|++. .+|..++....++.+++..|..+ ..|.
T Consensus        31 s~~~v~ei~~~-kr~tvld~~s~-r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~  105 (326)
T KOG0473|consen   31 SEIPVREIASF-KRVTVLDLSSN-RLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPK  105 (326)
T ss_pred             cccchhhhhcc-ceeeeehhhhh-HHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCc
Confidence            44554333444 77899999998 4443 4456778888999999999988 78889998899999999999998 8899


Q ss_pred             ccCCCCCCCEEEccCCcCC
Q 036300          159 SIGGLTKLLIFDLSRNNLS  177 (269)
Q Consensus       159 ~l~~l~~L~~L~l~~n~l~  177 (269)
                      ++...+.+++++...+.+.
T Consensus       106 s~~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  106 SQKKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             cccccCCcchhhhccCcch
Confidence            9999999999999998865

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.88  E-value=0.00038  Score=63.41  Aligned_cols=132  Identities=28%  Similarity=0.317  Sum_probs=64.1

Q ss_pred             CCCEEEcccCCCCCC----CCCCCCCCCCCCEEEccCCcCCC----CCcccc----CCCCCCCEEEccCCcCCchh----
Q 036300          117 NLQSLVLLEKGLTGK----LPIEPSKLVNLRRLALAGNQING----QIPASI----GGLTKLLIFDLSRNNLSGSM----  180 (269)
Q Consensus       117 ~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~----~~p~~l----~~l~~L~~L~l~~n~l~~~~----  180 (269)
                      .+++|.+..|.+++.    +...+.....++.++++.|.+..    .++..+    ....++++|.+++|.++...    
T Consensus       145 ~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l  224 (478)
T KOG4308|consen  145 LLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALL  224 (478)
T ss_pred             HHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHH
Confidence            344444444444432    12223334556666666665521    111222    23455666666666655211    


Q ss_pred             hhhhcCccc-CCEEeCcCCcCCCc----CchhhcCC-CCCCEEEccCCccCCc----chhhhhcCCCCCeEEccCCCC
Q 036300          181 LLTLGKLAR-LLKLDLSYNNLQEK----IPKEIGNL-HNVTFLDLRSNNFLGG----LVGSIEEMVSLKEMVVSNNPI  248 (269)
Q Consensus       181 ~~~~~~l~~-L~~L~ls~n~l~~~----~p~~~~~l-~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~N~l  248 (269)
                      ...+...+. +..+++..|.+.+.    ..+.+... ..++.++++.|.|+..    ..+.+..++.++++.++.|++
T Consensus       225 ~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l  302 (478)
T KOG4308|consen  225 DEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPL  302 (478)
T ss_pred             HHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcc
Confidence            122333333 45566666665532    12223333 4566777777776652    333445556666777777766

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.84  E-value=0.041  Score=25.41  Aligned_cols=9  Identities=44%  Similarity=0.704  Sum_probs=3.0

Q ss_pred             CEEEccCCc
Q 036300          143 RRLALAGNQ  151 (269)
Q Consensus       143 ~~L~L~~n~  151 (269)
                      +.|++++|+
T Consensus         4 ~~L~l~~n~   12 (17)
T PF13504_consen    4 RTLDLSNNR   12 (17)
T ss_dssp             SEEEETSS-
T ss_pred             CEEECCCCC
Confidence            333333333

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.59  E-value=0.0012  Score=53.61  Aligned_cols=85  Identities=25%  Similarity=0.168  Sum_probs=43.5

Q ss_pred             ccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCC
Q 036300          112 IDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLL  191 (269)
Q Consensus       112 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  191 (269)
                      +......+.||++.|++. .+...|+-++.|..|+++.|++. .+|..+.....+..+++..|..+ ..|.+++..+.++
T Consensus        38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k  114 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK  114 (326)
T ss_pred             hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence            344455555555555554 33334444555555555555555 45555555545555555555544 4455555555555


Q ss_pred             EEeCcCCc
Q 036300          192 KLDLSYNN  199 (269)
Q Consensus       192 ~L~ls~n~  199 (269)
                      ++++..|.
T Consensus       115 ~~e~k~~~  122 (326)
T KOG0473|consen  115 KNEQKKTE  122 (326)
T ss_pred             hhhhccCc
Confidence            55555544

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=93.40  E-value=0.028  Score=49.56  Aligned_cols=129  Identities=17%  Similarity=0.107  Sum_probs=70.8

Q ss_pred             CCCCCEEEccCCcCCCCCc-ccc-CCCCCCCEEEccCCc-CCchhhhhh-cCcccCCEEeCcCCcCCC--cCchhhcCCC
Q 036300          139 LVNLRRLALAGNQINGQIP-ASI-GGLTKLLIFDLSRNN-LSGSMLLTL-GKLARLLKLDLSYNNLQE--KIPKEIGNLH  212 (269)
Q Consensus       139 l~~L~~L~L~~n~l~~~~p-~~l-~~l~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~ls~n~l~~--~~p~~~~~l~  212 (269)
                      +..|++++.+++...+..+ ..+ .+.++|+++.++.++ ++..-...+ .+++.|+.+++..+....  .+...-.+++
T Consensus       293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~  372 (483)
T KOG4341|consen  293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP  372 (483)
T ss_pred             hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence            4455666666554321211 122 456777888777775 332211222 345667777777664321  1222234677


Q ss_pred             CCCEEEccCCcc-CCcc----hhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceec
Q 036300          213 NVTFLDLRSNNF-LGGL----VGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWI  268 (269)
Q Consensus       213 ~L~~L~L~~N~l-~~~~----~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~  268 (269)
                      .|+.+.++++.. ++.-    ...-..+..|..+.+++++.+.+.... .+..+++|+.++
T Consensus       373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le-~l~~c~~Leri~  432 (483)
T KOG4341|consen  373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLE-HLSICRNLERIE  432 (483)
T ss_pred             hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHH-HHhhCcccceee
Confidence            888888887753 3220    112234567778888888774554443 666777777654

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.77  E-value=0.042  Score=43.85  Aligned_cols=79  Identities=19%  Similarity=0.144  Sum_probs=32.7

Q ss_pred             CCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCch-hhhhhc-CcccCCEEeCcCC-cCCCcCchhhcCCCCCCEEE
Q 036300          142 LRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGS-MLLTLG-KLARLLKLDLSYN-NLQEKIPKEIGNLHNVTFLD  218 (269)
Q Consensus       142 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~-~~~~~~-~l~~L~~L~ls~n-~l~~~~p~~~~~l~~L~~L~  218 (269)
                      ++.+|-++..|...--+.+.+++.++.|.+.+|.--+. --..++ -.++|+.|++++| ++++.--..+..+++|+.|.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~  182 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH  182 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence            44555555554433333444455555555554432111 001111 1244555555544 34333333344444444444


Q ss_pred             cc
Q 036300          219 LR  220 (269)
Q Consensus       219 L~  220 (269)
                      +.
T Consensus       183 l~  184 (221)
T KOG3864|consen  183 LY  184 (221)
T ss_pred             hc
Confidence            43

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=91.81  E-value=0.051  Score=47.96  Aligned_cols=131  Identities=17%  Similarity=0.138  Sum_probs=85.5

Q ss_pred             CCCCCCCEEEccCCc-CCCCCcccc-CCCCCCCEEEccCCcCCc--hhhhhhcCcccCCEEeCcCCcCCCcC-----chh
Q 036300          137 SKLVNLRRLALAGNQ-INGQIPASI-GGLTKLLIFDLSRNNLSG--SMLLTLGKLARLLKLDLSYNNLQEKI-----PKE  207 (269)
Q Consensus       137 ~~l~~L~~L~L~~n~-l~~~~p~~l-~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~ls~n~l~~~~-----p~~  207 (269)
                      .+..+|+++-+..++ |+..--..+ .+++.|+.+++..+....  .+...-.+++.|+.+.++.+......     ...
T Consensus       317 ~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~  396 (483)
T KOG4341|consen  317 QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSS  396 (483)
T ss_pred             cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhc
Confidence            567899999999987 332211222 567889999998886532  23333357789999999987543221     122


Q ss_pred             hcCCCCCCEEEccCCccC-CcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCcee
Q 036300          208 IGNLHNVTFLDLRSNNFL-GGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIW  267 (269)
Q Consensus       208 ~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L  267 (269)
                      -.....|+.+-|+++..+ ....+.+..+++|+.+++-+++-.+.+--.....++|+++..
T Consensus       397 ~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~  457 (483)
T KOG4341|consen  397 SCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVH  457 (483)
T ss_pred             cccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceeh
Confidence            245677899999998754 355567788899999999888652333222244567776643

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.78  E-value=0.16  Score=26.11  Aligned_cols=18  Identities=33%  Similarity=0.479  Sum_probs=9.8

Q ss_pred             CCCCeEEccCCCCCCCCCCc
Q 036300          236 VSLKEMVVSNNPIFGGGLNG  255 (269)
Q Consensus       236 ~~L~~L~l~~N~l~~~~~p~  255 (269)
                      ++|++|++++|++  ..+|.
T Consensus         2 ~~L~~L~L~~N~l--~~lp~   19 (26)
T smart00369        2 PNLRELDLSNNQL--SSLPP   19 (26)
T ss_pred             CCCCEEECCCCcC--CcCCH
Confidence            4555555666655  44444

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.78  E-value=0.16  Score=26.11  Aligned_cols=18  Identities=33%  Similarity=0.479  Sum_probs=9.8

Q ss_pred             CCCCeEEccCCCCCCCCCCc
Q 036300          236 VSLKEMVVSNNPIFGGGLNG  255 (269)
Q Consensus       236 ~~L~~L~l~~N~l~~~~~p~  255 (269)
                      ++|++|++++|++  ..+|.
T Consensus         2 ~~L~~L~L~~N~l--~~lp~   19 (26)
T smart00370        2 PNLRELDLSNNQL--SSLPP   19 (26)
T ss_pred             CCCCEEECCCCcC--CcCCH
Confidence            4555555666655  44444

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.97  E-value=0.24  Score=25.37  Aligned_cols=16  Identities=31%  Similarity=0.297  Sum_probs=9.4

Q ss_pred             CCCCEEEccCCccCCc
Q 036300          212 HNVTFLDLRSNNFLGG  227 (269)
Q Consensus       212 ~~L~~L~L~~N~l~~~  227 (269)
                      ++|++|+|++|.++..
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00370        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            4566666666666533

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.97  E-value=0.24  Score=25.37  Aligned_cols=16  Identities=31%  Similarity=0.297  Sum_probs=9.4

Q ss_pred             CCCCEEEccCCccCCc
Q 036300          212 HNVTFLDLRSNNFLGG  227 (269)
Q Consensus       212 ~~L~~L~L~~N~l~~~  227 (269)
                      ++|++|+|++|.++..
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00369        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            4566666666666533

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=90.76  E-value=0.09  Score=26.49  Aligned_cols=18  Identities=28%  Similarity=0.276  Sum_probs=8.4

Q ss_pred             CCCCEEEccCCccCCcch
Q 036300          212 HNVTFLDLRSNNFLGGLV  229 (269)
Q Consensus       212 ~~L~~L~L~~N~l~~~~~  229 (269)
                      ++|++|+|++|+|++...
T Consensus         2 ~~L~~L~l~~n~i~~~g~   19 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGA   19 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHH
T ss_pred             CCCCEEEccCCcCCHHHH
Confidence            455566666665554333

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.56  E-value=0.058  Score=43.04  Aligned_cols=81  Identities=20%  Similarity=0.158  Sum_probs=40.9

Q ss_pred             CCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCC-cccc-CCCCCCCEEEccCC-cCCchhhhhhcCcccCCEE
Q 036300          117 NLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQI-PASI-GGLTKLLIFDLSRN-NLSGSMLLTLGKLARLLKL  193 (269)
Q Consensus       117 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-p~~l-~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L  193 (269)
                      .++.++-+++.|..+--+.+.+++.++.|.+.+|.--+.. -+.+ .-.++|+.|++++| +|+...-..+..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            3555666666655544455556666666666655422110 0111 12355666666655 3444444455555666655


Q ss_pred             eCcC
Q 036300          194 DLSY  197 (269)
Q Consensus       194 ~ls~  197 (269)
                      .+.+
T Consensus       182 ~l~~  185 (221)
T KOG3864|consen  182 HLYD  185 (221)
T ss_pred             HhcC
Confidence            5544

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=89.84  E-value=0.0063  Score=55.53  Aligned_cols=155  Identities=25%  Similarity=0.269  Sum_probs=99.2

Q ss_pred             ccEEEccCCCCceec----cCccccCCCCCCEEEcccCCCCC----CCCCCC----CCCCCCCEEEccCCcCCCC----C
Q 036300           93 LDSLEFGSNPRLIGT----IPTSIDYLKNLQSLVLLEKGLTG----KLPIEP----SKLVNLRRLALAGNQINGQ----I  156 (269)
Q Consensus        93 L~~L~l~~n~~l~~~----~p~~l~~l~~L~~L~L~~n~l~~----~~p~~~----~~l~~L~~L~L~~n~l~~~----~  156 (269)
                      +++|++..| .+++.    +.+.+.....++.++++.|.+..    .++..+    ....++++|.+.+|.++..    +
T Consensus       146 l~~L~l~~c-~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l  224 (478)
T KOG4308|consen  146 LQTLELVSC-SLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALL  224 (478)
T ss_pred             HHHHHhhcc-cccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHH
Confidence            455666666 45443    44456667889999999998852    122233    3477899999999988722    1


Q ss_pred             ccccCCCCC-CCEEEccCCcCCch----hhhhhcCc-ccCCEEeCcCCcCCCcC----chhhcCCCCCCEEEccCCccCC
Q 036300          157 PASIGGLTK-LLIFDLSRNNLSGS----MLLTLGKL-ARLLKLDLSYNNLQEKI----PKEIGNLHNVTFLDLRSNNFLG  226 (269)
Q Consensus       157 p~~l~~l~~-L~~L~l~~n~l~~~----~~~~~~~l-~~L~~L~ls~n~l~~~~----p~~~~~l~~L~~L~L~~N~l~~  226 (269)
                      ...+...+. +..|++..|.+.+.    ....+..+ ..++.++++.|.+...-    .+.+..++.++++.++.|.+..
T Consensus       225 ~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  225 DEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            223444555 66789999988754    23345555 67899999999998643    3445677789999999998875


Q ss_pred             cc----hhhhhcCCCCCeEEccCCCC
Q 036300          227 GL----VGSIEEMVSLKEMVVSNNPI  248 (269)
Q Consensus       227 ~~----~~~~~~l~~L~~L~l~~N~l  248 (269)
                      ..    -........+..+-+.++..
T Consensus       305 ~~~~~~~~~l~~~~~~~~~~l~~~~~  330 (478)
T KOG4308|consen  305 YGVELLLEALERKTPLLHLVLGGTGK  330 (478)
T ss_pred             HHHHHHHHHhhhcccchhhhccccCc
Confidence            22    12223334444555554443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	269
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		4e-09
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		3e-05
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		5e-09
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		3e-05
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-06

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 81/175 (46%), Gaps = 8/175 (4%)
Query: 80  EIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKN-LQSLVLLEKGLTGKLPIEPSK 138
           E+P S    L+ SL +L+  SN      +P      KN LQ L L   G TGK+P   S 
Sbjct: 355 ELPES-LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN 413
Query: 139 LVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMXXXXXXXXXXXXXXXSYN 198
              L  L L+ N ++G IP+S+G L+KL    L  N L G +                +N
Sbjct: 414 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 473
Query: 199 NLQEKIPKEIGNLHNVTFLDLRSNNFLGGL---VGSIEEMVSLKEMVVSNNPIFG 250
           +L  +IP  + N  N+ ++ L +N   G +   +G +E +  LK   +SNN   G
Sbjct: 474 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK---LSNNSFSG 525

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 24/106 (22%)
Query: 145 LALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMXXXXXXXXXXXXXXXSYNNLQEKI 204
           L ++ N ++G IP  IG +  L I +L  N++SGS                        I
Sbjct: 634 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS------------------------I 669
Query: 205 PKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFG 250
           P E+G+L  +  LDL SN   G +  ++  +  L E+ +SNN + G
Sbjct: 670 PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 715

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 81/175 (46%), Gaps = 8/175 (4%)
Query: 80  EIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKN-LQSLVLLEKGLTGKLPIEPSK 138
           E+P S    L+ SL +L+  SN      +P      KN LQ L L   G TGK+P   S 
Sbjct: 358 ELPES-LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN 416
Query: 139 LVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMXXXXXXXXXXXXXXXSYN 198
              L  L L+ N ++G IP+S+G L+KL    L  N L G +                +N
Sbjct: 417 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 476
Query: 199 NLQEKIPKEIGNLHNVTFLDLRSNNFLGGL---VGSIEEMVSLKEMVVSNNPIFG 250
           +L  +IP  + N  N+ ++ L +N   G +   +G +E +  LK   +SNN   G
Sbjct: 477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK---LSNNSFSG 528

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 24/106 (22%)
Query: 145 LALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMXXXXXXXXXXXXXXXSYNNLQEKI 204
           L ++ N ++G IP  IG +  L I +L  N++SGS                        I
Sbjct: 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS------------------------I 672
Query: 205 PKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFG 250
           P E+G+L  +  LDL SN   G +  ++  +  L E+ +SNN + G
Sbjct: 673 PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 718

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 95/245 (38%), Gaps = 58/245 (23%)
Query: 75  LQSPIEIPSSNWQKLAN--SLDSLEFGSNPRLIGTIPTSI-------------------- 112
           L  P  IPSS    LAN   L+ L  G    L+G IP +I                    
Sbjct: 62  LPKPYPIPSS----LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAI 117
Query: 113 -DYLKNLQSLVLLE---KGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLL- 167
            D+L  +++LV L+     L+G LP   S L NL  +   GN+I+G IP S G  +KL  
Sbjct: 118 PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFT 177
Query: 168 -----------------------IFDLSRNNLSGSMXXXXXXXXXXXXXXXSYNNLQEKI 204
                                    DLSRN L G                 + N+L   +
Sbjct: 178 SMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL 237
Query: 205 PKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNL 264
            K +G   N+  LDLR+N   G L   + ++  L  + VS N + G    G    NLQ  
Sbjct: 238 GK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG---GNLQRF 293
Query: 265 EIWIF 269
           ++  +
Sbjct: 294 DVSAY 298

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	269
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-39
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-31
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-29
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-27
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-33
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-33
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-29
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-29
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-28
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-27
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-26
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-26
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-25
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-25
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-23
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-22
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-25
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-23
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-20
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-20
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-22
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-22
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-21
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-21
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-20
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-19
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-18
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-17
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-21
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-20
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-20
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-20
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-20
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-19
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-18
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-19
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-17
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-17
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-17
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-16
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-16
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-17
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-14
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-15
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-15
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-15
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-10
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	8e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	5e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	9e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-04

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  138 bits (349), Expect = 3e-39
 Identities = 58/233 (24%), Positives = 95/233 (40%), Gaps = 27/233 (11%)

Query: 21  WNGSDLYPDPFGRTGLQGVSCDFFHGLWHVSAISIGPVYDNSLVCSQCKIFKPPLQSPIE 80
           W  +             GV CD     + V+ + +      +            L  P  
Sbjct: 27  WLPTT----DCCNRTWLGVLCDTDTQTYRVNNLDLS---GLN------------LPKPYP 67

Query: 81  IPSSNWQKLAN--SLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSK 138
           IPSS    LAN   L+ L  G    L+G IP +I  L  L  L +    ++G +P   S+
Sbjct: 68  IPSS----LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ 123

Query: 139 LVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLK-LDLSY 197
           +  L  L  + N ++G +P SI  L  L+      N +SG++  + G  ++L   + +S 
Sbjct: 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR 183

Query: 198 NNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFG 250
           N L  KIP    NL N+ F+DL  N   G          + +++ ++ N +  
Sbjct: 184 NRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF 235

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  116 bits (294), Expect = 3e-31
 Identities = 50/170 (29%), Positives = 79/170 (46%), Gaps = 10/170 (5%)

Query: 80  EIPSSNWQKLAN--SLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPS 137
            IP      L+   +L +L+F  N  L GT+P SI  L NL  +      ++G +P    
Sbjct: 116 AIPDF----LSQIKTLVTLDFSYN-ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170

Query: 138 KLVNLRR-LALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLS 196
               L   + ++ N++ G+IP +   L  L   DLSRN L G   +  G      K+ L+
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLA 229

Query: 197 YNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNN 246
            N+L   +  ++G   N+  LDLR+N   G L   + ++  L  + VS N
Sbjct: 230 KNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  112 bits (283), Expect = 1e-29
 Identities = 46/171 (26%), Positives = 74/171 (43%), Gaps = 5/171 (2%)

Query: 84  SNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPS--KLVN 141
            N   L++ L + +   N   +G +  +      + +L L    L    PI  S   L  
Sbjct: 19  GNPTTLSSWLPTTDC-CNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPY 77

Query: 142 LRRLALAG-NQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNL 200
           L  L + G N + G IP +I  LT+L    ++  N+SG++   L ++  L+ LD SYN L
Sbjct: 78  LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL 137

Query: 201 QEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKE-MVVSNNPIFG 250
              +P  I +L N+  +    N   G +  S      L   M +S N + G
Sbjct: 138 SGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG 188

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  105 bits (265), Expect = 5e-27
 Identities = 42/148 (28%), Positives = 64/148 (43%), Gaps = 5/148 (3%)

Query: 80  EIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKL 139
            IP S +   +    S+    N RL G IP +   L NL  + L    L G   +     
Sbjct: 164 AIPDS-YGSFSKLFTSMTISRN-RLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSD 220

Query: 140 VNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNN 199
            N +++ LA N +   +   +G    L   DL  N + G++   L +L  L  L++S+NN
Sbjct: 221 KNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279

Query: 200 LQEKIPKEIGNLHNVTFLDLRSNNFLGG 227
           L  +IP+  GNL         +N  L G
Sbjct: 280 LCGEIPQG-GNLQRFDVSAYANNKCLCG 306

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 51.0 bits (123), Expect = 1e-07
 Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 7/103 (6%)

Query: 155 QIPASIGGLTKL----LIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNL--QEKIPKEI 208
           QI   +G  T L       D       G +  T  +  R+  LDLS  NL     IP  +
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 209 GNLHNVTFLDLRSNNFLGGLV-GSIEEMVSLKEMVVSNNPIFG 250
            NL  + FL +   N L G +  +I ++  L  + +++  + G
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG 115

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  127 bits (321), Expect = 2e-33
 Identities = 56/173 (32%), Positives = 85/173 (49%), Gaps = 4/173 (2%)

Query: 80  EIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSI--DYLKNLQSLVLLEKGLTGKLPIEPS 137
           E+P S    L+ SL +L+  SN    G I  ++  +    LQ L L   G TGK+P   S
Sbjct: 358 ELPESLTN-LSASLLTLDLSSN-NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 415

Query: 138 KLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSY 197
               L  L L+ N ++G IP+S+G L+KL    L  N L G +   L  +  L  L L +
Sbjct: 416 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 475

Query: 198 NNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFG 250
           N+L  +IP  + N  N+ ++ L +N   G +   I  + +L  + +SNN   G
Sbjct: 476 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 528

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  127 bits (321), Expect = 2e-33
 Identities = 52/171 (30%), Positives = 77/171 (45%), Gaps = 1/171 (0%)

Query: 80  EIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKL 139
            I  +  Q   N+L  L   +N    G IP ++     L SL L    L+G +P     L
Sbjct: 383 PILPNLCQNPKNTLQELYLQNN-GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL 441

Query: 140 VNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNN 199
             LR L L  N + G+IP  +  +  L    L  N+L+G +   L     L  + LS N 
Sbjct: 442 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR 501

Query: 200 LQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFG 250
           L  +IPK IG L N+  L L +N+F G +   + +  SL  + ++ N   G
Sbjct: 502 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  115 bits (291), Expect = 2e-29
 Identities = 51/149 (34%), Positives = 76/149 (51%), Gaps = 3/149 (2%)

Query: 80  EIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKL 139
           +IP +      + L SL    N  L GTIP+S+  L  L+ L L    L G++P E   +
Sbjct: 409 KIPPTLSN--CSELVSLHLSFN-YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV 465

Query: 140 VNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNN 199
             L  L L  N + G+IP+ +   T L    LS N L+G +   +G+L  L  L LS N+
Sbjct: 466 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 525

Query: 200 LQEKIPKEIGNLHNVTFLDLRSNNFLGGL 228
               IP E+G+  ++ +LDL +N F G +
Sbjct: 526 FSGNIPAELGDCRSLIWLDLNTNLFNGTI 554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  115 bits (289), Expect = 3e-29
 Identities = 56/187 (29%), Positives = 84/187 (44%), Gaps = 7/187 (3%)

Query: 80  EIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKL 139
            IPSS    L + L  L+   N  L G IP  + Y+K L++L+L    LTG++P   S  
Sbjct: 433 TIPSS-LGSL-SKLRDLKLWLN-MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 489

Query: 140 VNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNN 199
            NL  ++L+ N++ G+IP  IG L  L I  LS N+ SG++   LG    L+ LDL+ N 
Sbjct: 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549

Query: 200 LQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWE 259
               IP  +          + +N   G     I+     KE   + N +   G+   +  
Sbjct: 550 FNGTIPAAMFKQ----SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN 605

Query: 260 NLQNLEI 266
            L     
Sbjct: 606 RLSTRNP 612

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  112 bits (283), Expect = 2e-28
 Identities = 56/174 (32%), Positives = 86/174 (49%), Gaps = 14/174 (8%)

Query: 80  EIPSSNWQKLAN--SLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIE-P 136
           +   +    ++    L  L   SN + +G IP     LK+LQ L L E   TG++P    
Sbjct: 238 DFSRA----ISTCTELKLLNISSN-QFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLS 290

Query: 137 SKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSM-LLTLGKLARLLKLDL 195
                L  L L+GN   G +P   G  + L    LS NN SG + + TL K+  L  LDL
Sbjct: 291 GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDL 350

Query: 196 SYNNLQEKIPKEIGNLH-NVTFLDLRSNNFLGGLVGSI--EEMVSLKEMVVSNN 246
           S+N    ++P+ + NL  ++  LDL SNNF G ++ ++      +L+E+ + NN
Sbjct: 351 SFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 404

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  109 bits (274), Expect = 4e-27
 Identities = 41/192 (21%), Positives = 76/192 (39%), Gaps = 9/192 (4%)

Query: 75  LQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPI 134
           +     +           L  L    N ++ G +   +    NL+ L +     +  +P 
Sbjct: 163 ISGANVVGWVLSDGCGE-LKHLAISGN-KISGDVD--VSRCVNLEFLDVSSNNFSTGIP- 217

Query: 135 EPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLD 194
                  L+ L ++GN+++G    +I   T+L + ++S N   G   +    L  L  L 
Sbjct: 218 FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGP--IPPLPLKSLQYLS 275

Query: 195 LSYNNLQEKIPKEI-GNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGL 253
           L+ N    +IP  + G    +T LDL  N+F G +         L+ + +S+N  F G L
Sbjct: 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN-FSGEL 334

Query: 254 NGIRWENLQNLE 265
                  ++ L+
Sbjct: 335 PMDTLLKMRGLK 346

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  107 bits (269), Expect = 2e-26
 Identities = 32/149 (21%), Positives = 59/149 (39%), Gaps = 2/149 (1%)

Query: 100 SNPRLIGTIPTSIDYLKNLQSLVLLEKG--LTGKLPIEPSKLVNLRRLALAGNQINGQIP 157
           +   + G     I      +            G    + ++L       +      G   
Sbjct: 566 AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS 625

Query: 158 ASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFL 217
            +      ++  D+S N LSG +   +G +  L  L+L +N++   IP E+G+L  +  L
Sbjct: 626 PTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNIL 685

Query: 218 DLRSNNFLGGLVGSIEEMVSLKEMVVSNN 246
           DL SN   G +  ++  +  L E+ +SNN
Sbjct: 686 DLSSNKLDGRIPQAMSALTMLTEIDLSNN 714

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  106 bits (266), Expect = 4e-26
 Identities = 48/181 (26%), Positives = 75/181 (41%), Gaps = 14/181 (7%)

Query: 92  SLDSLEFGSNPRLIGTIPT--SIDYLKNLQSLVLLEKGLTGKLPIEP-SKLVNLRRLALA 148
           SL SL+   N  L G + T  S+     L+ L +    L     +    KL +L  L L+
Sbjct: 101 SLTSLDLSRN-SLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 159

Query: 149 GNQINGQIPASI---GGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIP 205
            N I+G          G  +L    +S N +SG   + + +   L  LD+S NN    IP
Sbjct: 160 ANSISGANVVGWVLSDGCGELKHLAISGNKISGD--VDVSRCVNLEFLDVSSNNFSTGIP 217

Query: 206 KEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLE 265
             +G+   +  LD+  N   G    +I     LK + +S+N   G     I    L++L+
Sbjct: 218 -FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG----PIPPLPLKSLQ 272

Query: 266 I 266
            
Sbjct: 273 Y 273

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  104 bits (262), Expect = 1e-25
 Identities = 36/128 (28%), Positives = 59/128 (46%)

Query: 99  GSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPA 158
           G+     G     ++ L       +  +   G          ++  L ++ N ++G IP 
Sbjct: 591 GNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK 650

Query: 159 SIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLD 218
            IG +  L I +L  N++SGS+   +G L  L  LDLS N L  +IP+ +  L  +T +D
Sbjct: 651 EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 710

Query: 219 LRSNNFLG 226
           L +NN  G
Sbjct: 711 LSNNNLSG 718

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  104 bits (261), Expect = 2e-25
 Identities = 45/194 (23%), Positives = 82/194 (42%), Gaps = 19/194 (9%)

Query: 80  EIPSSNWQKLAN--SLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPS 137
           EIPS     L+N  +L+ +   +N RL G IP  I  L+NL  L L     +G +P E  
Sbjct: 481 EIPSG----LSNCTNLNWISLSNN-RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 535

Query: 138 KLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSY 197
              +L  L L  N  NG IPA++   +      ++ N ++G   + +       +   + 
Sbjct: 536 DCRSLIWLDLNTNLFNGTIPAAMFKQS----GKIAANFIAGKRYVYIKNDGMKKECHGAG 591

Query: 198 NNLQEK--IPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFG----- 250
           N L+ +    +++  L      ++ S  + G    + +   S+  + +S N + G     
Sbjct: 592 NLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE 651

Query: 251 -GGLNGIRWENLQN 263
            G +  +   NL +
Sbjct: 652 IGSMPYLFILNLGH 665

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 96.5 bits (241), Expect = 8e-23
 Identities = 35/153 (22%), Positives = 62/153 (40%), Gaps = 9/153 (5%)

Query: 104 LIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPA--SIG 161
               + +S+  L  L+SL L    + G +        +L  L L+ N ++G +    S+G
Sbjct: 65  GFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLG 123

Query: 162 GLTKLLIFDLSRNNLSGSMLLTLG-KLARLLKLDLSYNNLQEKIPKEI---GNLHNVTFL 217
             + L   ++S N L     ++ G KL  L  LDLS N++                +  L
Sbjct: 124 SCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHL 183

Query: 218 DLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFG 250
            +  N   G +   +   V+L+ + VS+N    
Sbjct: 184 AISGNKISGDV--DVSRCVNLEFLDVSSNNFST 214

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 94.6 bits (236), Expect = 4e-22
 Identities = 40/134 (29%), Positives = 57/134 (42%), Gaps = 2/134 (1%)

Query: 92  SLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQ 151
           + +     S     G    + D   ++  L +    L+G +P E   +  L  L L  N 
Sbjct: 609 TRNPCNITSR-VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHND 667

Query: 152 INGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNL 211
           I+G IP  +G L  L I DLS N L G +   +  L  L ++DLS NNL   IP E+G  
Sbjct: 668 ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP-EMGQF 726

Query: 212 HNVTFLDLRSNNFL 225
                    +N  L
Sbjct: 727 ETFPPAKFLNNPGL 740

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 81.9 bits (203), Expect = 8e-18
 Identities = 44/156 (28%), Positives = 63/156 (40%), Gaps = 13/156 (8%)

Query: 117 NLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNL 176
           +L S  L        +      L  L  L L+ + ING +         L   DLSRN+L
Sbjct: 56  DLSSKPL--NVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSL 112

Query: 177 SGSM--LLTLGKLARLLKLDLSYNNLQEKIPKEIG-NLHNVTFLDLRSNNFLGGLVGSIE 233
           SG +  L +LG  + L  L++S N L        G  L+++  LDL +N+  G  V    
Sbjct: 113 SGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWV 172

Query: 234 E---MVSLKEMVVSNNPIFGGGLNGIRWENLQNLEI 266
                  LK + +S N I G     +      NLE 
Sbjct: 173 LSDGCGELKHLAISGNKISG----DVDVSRCVNLEF 204

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 74.9 bits (185), Expect = 2e-15
 Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 7/130 (5%)

Query: 140 VNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNN 199
           ++L    L        + +S+  LT L    LS ++++GS +      A L  LDLS N+
Sbjct: 55  IDLSSKPLNVG--FSAVSSSLLSLTGLESLFLSNSHINGS-VSGFKCSASLTSLDLSRNS 111

Query: 200 LQEKIP--KEIGNLHNVTFLDLRSNNFLG-GLVGSIEEMVSLKEMVVSNNPIFGGGLNGI 256
           L   +     +G+   + FL++ SN     G V    ++ SL+ + +S N I G  + G 
Sbjct: 112 LSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGW 171

Query: 257 RW-ENLQNLE 265
              +    L+
Sbjct: 172 VLSDGCGELK 181

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 98.9 bits (247), Expect = 1e-23
 Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 5/174 (2%)

Query: 79  IEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEP-S 137
               S +      SL  L+   N   + T+ ++   L+ L+ L      L          
Sbjct: 362 KGCCSQSDFGT-TSLKYLDLSFN--GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 418

Query: 138 KLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLL-TLGKLARLLKLDLS 196
            L NL  L ++             GL+ L +  ++ N+   + L     +L  L  LDLS
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478

Query: 197 YNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFG 250
              L++  P    +L ++  L++  NNF        + + SL+ +  S N I  
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 532

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 89.7 bits (223), Expect = 2e-20
 Identities = 45/190 (23%), Positives = 71/190 (37%), Gaps = 10/190 (5%)

Query: 80  EIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKL 139
           +IP +    L  S  +L+   N  L      S      LQ L L    +          L
Sbjct: 21  KIPDN----LPFSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL 75

Query: 140 VNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNN 199
            +L  L L GN I      +  GL+ L        NL+      +G L  L +L++++N 
Sbjct: 76  SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 135

Query: 200 LQE-KIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVV----SNNPIFGGGLN 254
           +Q  K+P+   NL N+  LDL SN         +  +  +  + +    S NP+      
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG 195

Query: 255 GIRWENLQNL 264
             +   L  L
Sbjct: 196 AFKEIRLHKL 205

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 88.9 bits (221), Expect = 3e-20
 Identities = 36/179 (20%), Positives = 66/179 (36%), Gaps = 6/179 (3%)

Query: 92  SLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQ 151
            L  L+      +      +   L +L +L+L    +        S L +L++L      
Sbjct: 53  ELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 111

Query: 152 INGQIPASIGGLTKLLIFDLSRNNLSGSML-LTLGKLARLLKLDLSYNNLQEKIPKEIGN 210
           +       IG L  L   +++ N +    L      L  L  LDLS N +Q     ++  
Sbjct: 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171

Query: 211 LHNVTFLDLR---SNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEI 266
           LH +  L+L    S N +  +     + + L ++ + NN      +     + L  LE+
Sbjct: 172 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTC-IQGLAGLEV 229

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 86.2 bits (214), Expect = 2e-19
 Identities = 31/126 (24%), Positives = 49/126 (38%), Gaps = 1/126 (0%)

Query: 141 NLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNL 200
           + + L L+ N +      S     +L + DLSR  +          L+ L  L L+ N +
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 201 QEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWEN 260
           Q         L ++  L     N        I  + +LKE+ V++N I    L    + N
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSN 147

Query: 261 LQNLEI 266
           L NLE 
Sbjct: 148 LTNLEH 153

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 83.2 bits (206), Expect = 3e-18
 Identities = 44/179 (24%), Positives = 70/179 (39%), Gaps = 11/179 (6%)

Query: 91  NSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGN 150
                LE  +     G  PT    LK+L+ L        G        L +L  L L+ N
Sbjct: 304 FGWQHLELVNCK--FGQFPTL--KLKSLKRLTFT--SNKGGNAFSEVDLPSLEFLDLSRN 357

Query: 151 QIN--GQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEI 208
            ++  G    S  G T L   DLS N +   M      L +L  LD  ++NL++     +
Sbjct: 358 GLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSV 416

Query: 209 -GNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEI 266
             +L N+ +LD+   +      G    + SL+ + ++ N      L  I +  L+NL  
Sbjct: 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI-FTELRNLTF 474

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 81.2 bits (201), Expect = 1e-17
 Identities = 33/148 (22%), Positives = 57/148 (38%), Gaps = 4/148 (2%)

Query: 81  IPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKL-PIEPSKL 139
              S +  L N L  L+               + L +L+ L +          P   ++L
Sbjct: 412 SEFSVFLSLRN-LIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469

Query: 140 VNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNN 199
            NL  L L+  Q+    P +   L+ L + ++S NN           L  L  LD S N+
Sbjct: 470 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 529

Query: 200 LQEKIPKEIGNL-HNVTFLDLRSNNFLG 226
           +     +E+ +   ++ FL+L  N+F  
Sbjct: 530 IMTSKKQELQHFPSSLAFLNLTQNDFAC 557

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 78.9 bits (195), Expect = 7e-17
 Identities = 46/191 (24%), Positives = 72/191 (37%), Gaps = 10/191 (5%)

Query: 81  IPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLV 140
           I    +Q L++ L +L    N  +      +   L +LQ LV +E  L          L 
Sbjct: 67  IEDGAYQSLSH-LSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 124

Query: 141 NLRRLALAGNQING-QIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARL----LKLDL 195
            L+ L +A N I   ++P     LT L   DLS N +       L  L ++    L LDL
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184

Query: 196 SYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLV-GSIEEMVSLKEMVVSNNPIFG-GGL 253
           S N +    P     +  +  L LR+N     ++   I+ +  L+   +        G L
Sbjct: 185 SLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243

Query: 254 NGIRWENLQNL 264
                  L+ L
Sbjct: 244 EKFDKSALEGL 254

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 63.9 bits (156), Expect = 9e-12
 Identities = 30/183 (16%), Positives = 58/183 (31%), Gaps = 16/183 (8%)

Query: 92  SLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLE---KGLTGKLPIEPSKLVNLRRLALA 148
            L  L   +N   +  + T I  L  L+   L+    +        + S L  L  L + 
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 149 GNQIN------GQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQE 202
             ++         I      LT +  F L    +    +           L+L      +
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFGQ 318

Query: 203 KIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQ 262
               ++ +L  +TF   +  N       S  ++ SL+ + +S N +   G          
Sbjct: 319 FPTLKLKSLKRLTFTSNKGGNAF-----SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTT 373

Query: 263 NLE 265
           +L+
Sbjct: 374 SLK 376

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 23/142 (16%), Positives = 50/142 (35%), Gaps = 8/142 (5%)

Query: 81  IPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLV 140
                + +L  +L  L+     +L    PT+ + L +LQ L +               L 
Sbjct: 461 FLPDIFTEL-RNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 518

Query: 141 NLRRLALAGNQINGQIPASIGGL-TKLLIFDLSRNNLSGS--MLLTLGKLARLLKLDLSY 197
           +L+ L  + N I       +    + L   +L++N+ + +      L  +    +L +  
Sbjct: 519 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEV 578

Query: 198 NNLQEKIPKEIGNLHNVTFLDL 219
             ++   P    +   +  L L
Sbjct: 579 ERMECATP---SDKQGMPVLSL 597

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 92.7 bits (231), Expect = 4e-22
 Identities = 41/166 (24%), Positives = 65/166 (39%), Gaps = 13/166 (7%)

Query: 91  NSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLP---------IEPSKLVN 141
             L++L    NP  +  +P SI  L  L+ L +       +LP          E   LVN
Sbjct: 127 AGLETLTLARNP--LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVN 184

Query: 142 LRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQ 201
           L+ L L    I   +PASI  L  L    +  + LS ++   +  L +L +LDL      
Sbjct: 185 LQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTAL 242

Query: 202 EKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNP 247
              P   G    +  L L+  + L  L   I  +  L+++ +    
Sbjct: 243 RNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV 288

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 92.3 bits (230), Expect = 5e-22
 Identities = 39/158 (24%), Positives = 61/158 (38%), Gaps = 9/158 (5%)

Query: 91  NSLDSLEFGSNPRLIG--TIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALA 148
             L  L     P  +           L NLQSL L   G+   LP   + L NL+ L + 
Sbjct: 161 PELTEL-----PEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIR 214

Query: 149 GNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEI 208
            + ++  +  +I  L KL   DL       +     G  A L +L L   +    +P +I
Sbjct: 215 NSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDI 273

Query: 209 GNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNN 246
             L  +  LDLR    L  L   I ++ +   ++V  +
Sbjct: 274 HRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 81.5 bits (202), Expect = 3e-18
 Identities = 32/176 (18%), Positives = 71/176 (40%), Gaps = 15/176 (8%)

Query: 84  SNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLK--NLQSLVLLEKGLTGKLPIEPSKLVN 141
            +  + ANS +        R +      ++        +L L    L  + P +  +L +
Sbjct: 47  HSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSH 105

Query: 142 LRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQ 201
           L+ + +    +  ++P ++     L    L+RN L  ++  ++  L RL +L +      
Sbjct: 106 LQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPEL 163

Query: 202 EKIPKEIGN---------LHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPI 248
            ++P+ + +         L N+  L L     +  L  SI  + +LK + + N+P+
Sbjct: 164 TELPEPLASTDASGEHQGLVNLQSLRL-EWTGIRSLPASIANLQNLKSLKIRNSPL 218

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 62.7 bits (153), Expect = 1e-11
 Identities = 22/145 (15%), Positives = 49/145 (33%), Gaps = 7/145 (4%)

Query: 105 IGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLT 164
           +G+      +    ++L    +G T  L      L   +R   A                
Sbjct: 1   MGSSHHHHHHSSGRENLYF--QGST-ALRPYHDVLSQWQRHYNADRNRW-HSAWRQANSN 56

Query: 165 KLLIFDLSRNNLSG-SMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNN 223
              I   +   L   + LL        + L+L    L +  P +   L ++  + + +  
Sbjct: 57  NPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAG 115

Query: 224 FLGGLVGSIEEMVSLKEMVVSNNPI 248
            L  L  ++++   L+ + ++ NP+
Sbjct: 116 -LMELPDTMQQFAGLETLTLARNPL 139

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 56.5 bits (137), Expect = 2e-09
 Identities = 24/117 (20%), Positives = 45/117 (38%), Gaps = 3/117 (2%)

Query: 91  NSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGN 150
            +L SL+  ++P  +  +  +I +L  L+ L L         P        L+RL L   
Sbjct: 206 QNLKSLKIRNSP--LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDC 263

Query: 151 QINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKE 207
                +P  I  LT+L   DL        +   + +L     + +   +LQ ++ + 
Sbjct: 264 SNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP-PHLQAQLDQH 319

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 93.2 bits (232), Expect = 1e-21
 Identities = 33/185 (17%), Positives = 62/185 (33%), Gaps = 23/185 (12%)

Query: 80  EIPSSNWQKLANSLDSLEFGSNPRLIGTIP--TSIDYLKNLQSLVL-------LEKGLTG 130
           EIP++        +++L F  N   +  IP       +  + ++         ++     
Sbjct: 367 EIPANFCGFT-EQVENLSFAHN--KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFD 423

Query: 131 KLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSG-------SMLLT 183
            L   P K +N+  + L+ NQI+          + L   +L  N L+             
Sbjct: 424 PLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENEN 483

Query: 184 LGKLARLLKLDLSYNNLQEKIPKEI--GNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEM 241
                 L  +DL +N L + +  +     L  +  +DL S N             +LK  
Sbjct: 484 FKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDL-SYNSFSKFPTQPLNSSTLKGF 541

Query: 242 VVSNN 246
            + N 
Sbjct: 542 GIRNQ 546

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 93.2 bits (232), Expect = 1e-21
 Identities = 23/200 (11%), Positives = 60/200 (30%), Gaps = 33/200 (16%)

Query: 75  LQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVL----------- 123
                 I  S       +L   + G     I  +  ++  L  L+   +           
Sbjct: 169 DPQQKSIKKS----SRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENIC 224

Query: 124 --------LEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNN 175
                             ++   L +L  + +       ++P  +  L ++ + +++ N 
Sbjct: 225 EAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR 284

Query: 176 L--------SGSMLLTLGKLARLLKLDLSYNNLQE-KIPKEIGNLHNVTFLDLRSNNFLG 226
                        L       ++  + + YNNL+   +   +  +  +  L+    N L 
Sbjct: 285 GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLEC-LYNQLE 343

Query: 227 GLVGSIEEMVSLKEMVVSNN 246
           G + +    + L  + ++ N
Sbjct: 344 GKLPAFGSEIKLASLNLAYN 363

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 89.3 bits (222), Expect = 3e-20
 Identities = 41/206 (19%), Positives = 68/206 (33%), Gaps = 19/206 (9%)

Query: 79  IEIPSSNWQKLAN-----SLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLP 133
            E    +WQ LA+      +  +  G N      + TS+  +K L  L  L   L GKLP
Sbjct: 288 GEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP 347

Query: 134 IEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSG-SMLLTLGKLARLLK 192
                 + L  L LA NQI        G   ++     + N L     +     ++ +  
Sbjct: 348 -AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSA 406

Query: 193 LDLSYNNLQ-------EKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSN 245
           +D SYN +        + +        NV+ ++L +N               L  + +  
Sbjct: 407 IDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG 466

Query: 246 N-----PIFGGGLNGIRWENLQNLEI 266
           N     P          ++N   L  
Sbjct: 467 NMLTEIPKNSLKDENENFKNTYLLTS 492

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 86.6 bits (215), Expect = 2e-19
 Identities = 20/184 (10%), Positives = 53/184 (28%), Gaps = 18/184 (9%)

Query: 92  SLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQ 151
            L      S+P    +I  S         +  L   +T  +     +L  LR+  +  + 
Sbjct: 160 DLIKDCINSDP-QQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSP 217

Query: 152 INGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNL 211
              +              +        +  L    L  L  +++       K+P  +  L
Sbjct: 218 FVAENICEAWENE-----NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL 272

Query: 212 HNVTFLDLRSNNFLGGLV--------GSIEEMVSLKEMVVSNNPIFGGGL-NGIRWENLQ 262
             +  +++  N  + G                  ++ + +  N +    +   ++   ++
Sbjct: 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQ--KMK 330

Query: 263 NLEI 266
            L +
Sbjct: 331 KLGM 334

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 82.4 bits (204), Expect = 5e-18
 Identities = 28/161 (17%), Positives = 56/161 (34%), Gaps = 8/161 (4%)

Query: 111 SIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQ----IPASIGGLTKL 166
           S++    +  L L   G +G++P    +L  L  LAL  +          P  I      
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 167 LIFDLSRNNLSGSMLLTLGKLA--RLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNF 224
                 R +   + +    +     L+K  ++ +  Q+ I K        T +   SNN 
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNN- 194

Query: 225 LGGLVGSIEEMVSLKEMVVSNNPIFG-GGLNGIRWENLQNL 264
           +  +  ++  +  L++  + N+P            EN +  
Sbjct: 195 ITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYA 235

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 80.1 bits (198), Expect = 3e-17
 Identities = 27/182 (14%), Positives = 59/182 (32%), Gaps = 20/182 (10%)

Query: 81  IPSSNWQKLANSLDSLEFGSN------PRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLP- 133
            P   +    + L S+    N         +     +      L S+ L    LT  L  
Sbjct: 448 FPKELFSTG-SPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSD 505

Query: 134 -IEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIF------DLSRNNLSGSMLLTLGK 186
               + L  L  + L+ N  +   P      + L  F      D   N         +  
Sbjct: 506 DFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITL 564

Query: 187 LARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNN 246
              L +L +  N++++ + ++I    N++ LD++ N  +   +  +   +     ++  +
Sbjct: 565 CPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYD 621

Query: 247 PI 248
             
Sbjct: 622 KT 623

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 70.5 bits (173), Expect = 6e-14
 Identities = 17/128 (13%), Positives = 43/128 (33%), Gaps = 6/128 (4%)

Query: 129 TGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLT----L 184
             +  +  +    +  L+L G   +G++P +IG LT+L +  L  +    +  L     +
Sbjct: 70  GAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGI 129

Query: 185 GKLARLLKLDLSYNNLQEKIPKEIGNLH--NVTFLDLRSNNFLGGLVGSIEEMVSLKEMV 242
                  +      + Q+            ++    + S+     +  S    +   ++ 
Sbjct: 130 SANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIG 189

Query: 243 VSNNPIFG 250
             +N I  
Sbjct: 190 QLSNNITF 197

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 61.2 bits (149), Expect = 7e-11
 Identities = 17/131 (12%), Positives = 37/131 (28%), Gaps = 15/131 (11%)

Query: 78  PIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEK------GLTGK 131
             +  ++        L  ++   N       PT       L+   +  +          +
Sbjct: 504 SDDFRATTLP----YLVGIDLSYN--SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLRE 557

Query: 132 LPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLL 191
            P   +   +L +L +  N I   +   I     + + D+  N      L  +       
Sbjct: 558 WPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAG 614

Query: 192 KLDLSYNNLQE 202
              L Y+  Q+
Sbjct: 615 MYMLFYDKTQD 625

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 54.3 bits (131), Expect = 1e-08
 Identities = 15/87 (17%), Positives = 28/87 (32%), Gaps = 4/87 (4%)

Query: 183 TLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGG----LVGSIEEMVSL 238
           +L    R+  L L       ++P  IG L  +  L L S+             I   +S 
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 239 KEMVVSNNPIFGGGLNGIRWENLQNLE 265
           ++            ++    E+  +L 
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLI 162

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 90.8 bits (226), Expect = 7e-21
 Identities = 35/162 (21%), Positives = 62/162 (38%), Gaps = 2/162 (1%)

Query: 105 IGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLT 164
           +  +P  +    N+  L L    L        ++   L  L +  N I+   P     L 
Sbjct: 16  LTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLP 73

Query: 165 KLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNF 224
            L + +L  N LS     T      L +L L  N++Q+          N+  LDL  N  
Sbjct: 74  MLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL 133

Query: 225 LGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEI 266
               +G+  ++ +L+E+++SNN I       +      +L+ 
Sbjct: 134 SSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKK 175

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 88.9 bits (221), Expect = 3e-20
 Identities = 46/189 (24%), Positives = 78/189 (41%), Gaps = 17/189 (8%)

Query: 92  SLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPS---KLVNLRRLALA 148
           SL  LE  SN ++    P     +  L  L L    L   L  +        ++R L+L+
Sbjct: 172 SLKKLELSSN-QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLS 230

Query: 149 GNQINGQIPASIGGL--TKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPK 206
            +Q++     +  GL  T L + DLS NNL+     +   L +L    L YNN+Q     
Sbjct: 231 NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH 290

Query: 207 EIGNLHNVTFLDLRSNNFLGGLV---------GSIEEMVSLKEMVVSNNPIFGGGLNGIR 257
            +  L NV +L+L+ +     +           S + +  L+ + + +N I   G+    
Sbjct: 291 SLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDI--PGIKSNM 348

Query: 258 WENLQNLEI 266
           +  L NL+ 
Sbjct: 349 FTGLINLKY 357

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 88.5 bits (220), Expect = 4e-20
 Identities = 42/161 (26%), Positives = 60/161 (37%), Gaps = 3/161 (1%)

Query: 92  SLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQ 151
            L SL+ G N  +    P     L  L+ L L    L+       +   NL  L L  N 
Sbjct: 50  QLTSLDVGFN-TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 108

Query: 152 INGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNL 211
           I             L+  DLS N LS + L T  +L  L +L LS N +Q    +E+   
Sbjct: 109 IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIF 168

Query: 212 HNV--TFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFG 250
            N     L+L SN       G    +  L  + ++N  +  
Sbjct: 169 ANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGP 209

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 80.0 bits (198), Expect = 3e-17
 Identities = 36/168 (21%), Positives = 57/168 (33%), Gaps = 12/168 (7%)

Query: 92  SLDSLEFGSNP-RLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGN 150
           SL  L       + + + P+    L+NL  L L    +          L  L  L L  N
Sbjct: 455 SLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHN 514

Query: 151 QIN--------GQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQE 202
            +         G     + GL+ L I +L  N      +     L  L  +DL  NNL  
Sbjct: 515 NLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNT 574

Query: 203 KIPKEIGNLHNVTFLDLRSNNFLGGLVGSI--EEMVSLKEMVVSNNPI 248
                  N  ++  L+L   N +  +   +      +L E+ +  NP 
Sbjct: 575 LPASVFNNQVSLKSLNL-QKNLITSVEKKVFGPAFRNLTELDMRFNPF 621

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 75.8 bits (187), Expect = 9e-16
 Identities = 35/188 (18%), Positives = 58/188 (30%), Gaps = 15/188 (7%)

Query: 92  SLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGN- 150
           +L  L+   N  L      S  +L  L+   L    +          L N+R L L  + 
Sbjct: 249 NLTMLDLSYN-NLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSF 307

Query: 151 --------QINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQE 202
                    +      S   L  L   ++  N++ G        L  L  L LS +    
Sbjct: 308 TKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSL 367

Query: 203 KIPKEIG----NLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRW 258
           +              +  L+L  N        +   +  L+ + +  N I G  L G  W
Sbjct: 368 RTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEI-GQELTGQEW 426

Query: 259 ENLQNLEI 266
             L+N+  
Sbjct: 427 RGLENIFE 434

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 89.9 bits (223), Expect = 1e-20
 Identities = 31/156 (19%), Positives = 55/156 (35%), Gaps = 12/156 (7%)

Query: 103 RLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQING-------- 154
           +       S   LK+L  + L       +LP     L  L+ L +A N+           
Sbjct: 478 KQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADW 537

Query: 155 -QIPASIGGLTKLLIFDLSRNNLSGSML-LTLGKLARLLKLDLSYNNLQEKIPKEIGNLH 212
            ++        K+ IF +  NNL       +L K+ +L  LD  +N +  +  +  G   
Sbjct: 538 TRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNV 595

Query: 213 NVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPI 248
            +T L L  N               ++ +  S+N +
Sbjct: 596 KLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKL 631

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 88.4 bits (219), Expect = 5e-20
 Identities = 36/207 (17%), Positives = 64/207 (30%), Gaps = 28/207 (13%)

Query: 80  EIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSI------DYLKNLQSLVLLEKGLTGKLP 133
            IP+    K    + S++F  N   IG+   +I          N  ++ L    +     
Sbjct: 633 YIPNIFNAKSVYVMGSVDFSYNK--IGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPT 690

Query: 134 IEPSKLVNLRRLALAGNQI-------NGQIPASIGGLTKLLIFDLSRNNLSG-SMLLTLG 185
              +    +  + L+ N +             +      L   DL  N L+  S      
Sbjct: 691 ELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRAT 750

Query: 186 KLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLR------SNNFLGGLVGSIEEMVSLK 239
            L  L  +D+SYN      P +  N   +    +R       N  L      I    SL 
Sbjct: 751 TLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLI 809

Query: 240 EMVVSNNPIFGGGLNGIRWENLQNLEI 266
           ++ + +N      +  +  +    L I
Sbjct: 810 QLQIGSND-----IRKVDEKLTPQLYI 831

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 87.2 bits (216), Expect = 1e-19
 Identities = 29/202 (14%), Positives = 61/202 (30%), Gaps = 22/202 (10%)

Query: 80  EIPSSNWQKLANSLDSLEFGSNPRLIGTIP--TSIDYLKNLQSLVLLEKGLTGK-----L 132
           EIP        + ++ L F  N   +  IP   +   +  + S+      +  +      
Sbjct: 609 EIPEDFCAFT-DQVEGLGFSHNK--LKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISC 665

Query: 133 PIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLS-------GSMLLTLG 185
            ++  K +N   + L+ N+I           + +    LS N ++               
Sbjct: 666 SMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYK 725

Query: 186 KLARLLKLDLSYNNLQEKIPKEI--GNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVV 243
               L  +DL +N L   +  +     L  ++ +D+ S N              LK   +
Sbjct: 726 NTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDV-SYNCFSSFPTQPLNSSQLKAFGI 783

Query: 244 SNNPIFGGG-LNGIRWENLQNL 264
            +     G  +       +   
Sbjct: 784 RHQRDAEGNRILRQWPTGITTC 805

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 83.8 bits (207), Expect = 2e-18
 Identities = 30/188 (15%), Positives = 63/188 (33%), Gaps = 11/188 (5%)

Query: 79  IEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKL---PIE 135
             +    +     + D  E   +   +      +DY + L    LL+  +       PI+
Sbjct: 359 ETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIK 418

Query: 136 PSKLVNLRRLALAG--NQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKL 193
               ++L+   +    N+I   I  +I  LTKL I   + +  +                
Sbjct: 419 KDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTY-----DNIAVDWEDA 472

Query: 194 DLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGL 253
           +  Y    E       NL ++T ++L +   +  L   + ++  L+ + ++ N       
Sbjct: 473 NSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQ 532

Query: 254 NGIRWENL 261
               W  L
Sbjct: 533 LKADWTRL 540

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 78.4 bits (193), Expect = 1e-16
 Identities = 23/183 (12%), Positives = 63/183 (34%), Gaps = 20/183 (10%)

Query: 80  EIPSSNWQKLANSLDSLEFGSN------PRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLP 133
           + P+  +   +  + ++   +N         +     +      L ++ L    LT  L 
Sbjct: 687 KFPTELFATGSP-ISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LS 744

Query: 134 --IEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSR------NNLSGSMLLTLG 185
                + L  L  + ++ N  +   P      ++L  F +        N +       + 
Sbjct: 745 DDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGIT 803

Query: 186 KLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSN 245
               L++L +  N++++ + +++     +  LD+  N  +   V S+   +     V+  
Sbjct: 804 TCPSLIQLQIGSNDIRK-VDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLY 860

Query: 246 NPI 248
           +  
Sbjct: 861 DKT 863

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 72.6 bits (178), Expect = 1e-14
 Identities = 33/191 (17%), Positives = 56/191 (29%), Gaps = 21/191 (10%)

Query: 91  NSLDSLEFGSNPRLIGTIPTS--IDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALA 148
             +     G N   +   P S  +  +  L  L  +   +   L       V L  L L 
Sbjct: 548 PKIQIFYMGYN--NLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLD 603

Query: 149 GNQINGQIPASIG-GLTKLLIFDLSRNNLSG-SMLLTLGKLARLLKLDLSYNNLQEKIPK 206
            NQI  +IP        ++     S N L     +     +  +  +D SYN +     +
Sbjct: 604 YNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGS-EGR 661

Query: 207 EIG------NLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNN-----PIFGGGLNG 255
            I          N + + L  N               +  +++SNN     P        
Sbjct: 662 NISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKD 721

Query: 256 IRWENLQNLEI 266
             ++N   L  
Sbjct: 722 GNYKNTYLLTT 732

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 58.0 bits (140), Expect = 9e-10
 Identities = 21/148 (14%), Positives = 53/148 (35%), Gaps = 29/148 (19%)

Query: 130 GKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLAR 189
            +  ++      +  L+LAG    G++P +IG LT+L +     ++ + S  L   +   
Sbjct: 313 DQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELT 372

Query: 190 LLKLDLSYNNLQEKIPK-----------------------EIGNLHNVTFLDLR------ 220
               +   + ++    K                       E+  +   + + L+      
Sbjct: 373 PDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGN 432

Query: 221 SNNFLGGLVGSIEEMVSLKEMVVSNNPI 248
             N +  +  +I+ +  L+ +  +N+P 
Sbjct: 433 LTNRITFISKAIQRLTKLQIIYFANSPF 460

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.5 bits (131), Expect = 1e-08
 Identities = 14/98 (14%), Positives = 33/98 (33%), Gaps = 1/98 (1%)

Query: 169 FDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGL 228
           F+   +       + L    R+  L L+    + ++P  IG L  +  L   +++     
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363

Query: 229 VGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEI 266
               +E ++        + I       +  +  Q L +
Sbjct: 364 RLFGDEELTPDMSEERKHRIR-MHYKKMFLDYDQRLNL 400

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 81.9 bits (203), Expect = 3e-19
 Identities = 40/158 (25%), Positives = 70/158 (44%), Gaps = 8/158 (5%)

Query: 91  NSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGN 150
           NSL  +   +    +  + T I+Y  N++ L +     T   PI  S L NL RL + G 
Sbjct: 44  NSLTYITLANIN--VTDL-TGIEYAHNIKDLTINNIHATNYNPI--SGLSNLERLRIMGK 98

Query: 151 QINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGN 210
            +      ++ GLT L + D+S +    S+L  +  L ++  +DLSYN     I   +  
Sbjct: 99  DVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKT 157

Query: 211 LHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPI 248
           L  +  L++   + +    G IE+   L ++   +  I
Sbjct: 158 LPELKSLNI-QFDGVHDYRG-IEDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 18/150 (12%), Positives = 47/150 (31%), Gaps = 30/150 (20%)

Query: 116 KNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNN 175
              ++ +    G +    I  +++ +L  + LA   +                      +
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVT---------------------D 58

Query: 176 LSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEM 235
           L+G     +     +  L ++  +        I  L N+  L +   +     + ++  +
Sbjct: 59  LTG-----IEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGL 111

Query: 236 VSLKEMVVSNNPIFGGGLNGIRWENLQNLE 265
            SL  + +S++      L  I    L  + 
Sbjct: 112 TSLTLLDISHSAHDDSILTKI--NTLPKVN 139

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 39.2 bits (92), Expect = 6e-04
 Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 6/88 (6%)

Query: 92  SLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEP-SKLVNLRRLALAGN 150
           SL  L+   +     +I T I+ L  + S+ L   G      I P   L  L+ L +  +
Sbjct: 113 SLTLLDISHS-AHDDSILTKINTLPKVNSIDLSYNGAITD--IMPLKTLPELKSLNIQFD 169

Query: 151 QINGQIPASIGGLTKLLIFDLSRNNLSG 178
            ++      I    KL         + G
Sbjct: 170 GVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 82.8 bits (205), Expect = 4e-18
 Identities = 29/175 (16%), Positives = 56/175 (32%), Gaps = 2/175 (1%)

Query: 92  SLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQ 151
           +L  L+     ++      +      L +LVL    L        S    L+ L      
Sbjct: 58  NLTFLDLTRC-QIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTG 116

Query: 152 INGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNL 211
           I+      +     L    L  N++S   L       +L  LD   N +     +++ +L
Sbjct: 117 ISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSL 176

Query: 212 HNVTFLDLR-SNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLE 265
              T L L  + N + G+     +    + +             G++   +Q+L 
Sbjct: 177 QQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLW 231

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 79.7 bits (197), Expect = 5e-17
 Identities = 29/142 (20%), Positives = 44/142 (30%), Gaps = 2/142 (1%)

Query: 107 TIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKL 166
            IP ++    + + L      L        S+L+NL  L L   QI      +     +L
Sbjct: 26  EIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRL 83

Query: 167 LIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLG 226
               L+ N L       L     L  L      +       + N   +  L L SN+   
Sbjct: 84  DTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS 143

Query: 227 GLVGSIEEMVSLKEMVVSNNPI 248
             +        LK +   NN I
Sbjct: 144 IKLPKGFPTEKLKVLDFQNNAI 165

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 79.3 bits (196), Expect = 5e-17
 Identities = 32/180 (17%), Positives = 64/180 (35%), Gaps = 9/180 (5%)

Query: 92  SLDSLEFGSNPRLIGTIPTSIDYLK--NLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAG 149
           SL    F          P   + L   +++S+ L +                L+ L L  
Sbjct: 229 SLWLGTFEDM-DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTA 287

Query: 150 NQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKE-I 208
             ++ ++P+ + GL+ L    LS N       ++      L  L +  N  + ++    +
Sbjct: 288 THLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCL 346

Query: 209 GNLHNVTFLDLRSNN--FLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEI 266
            NL N+  LDL  ++          +  +  L+ + +S N      L    ++    LE+
Sbjct: 347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEP--LSLKTEAFKECPQLEL 404

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 77.4 bits (191), Expect = 2e-16
 Identities = 34/175 (19%), Positives = 67/175 (38%), Gaps = 7/175 (4%)

Query: 80  EIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPS-- 137
            +   +      SL  L    N + +      ++ L+NL+ L L    +           
Sbjct: 315 NLCQISASNF-PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLR 373

Query: 138 KLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLT-LGKLARLLKLDLS 196
            L +L+ L L+ N+       +     +L + DL+   L      +    L  L  L+LS
Sbjct: 374 NLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS 433

Query: 197 YNNLQEKIPKEIGNLHNVTFLDLRSNNFLGG---LVGSIEEMVSLKEMVVSNNPI 248
           ++ L     +    L  +  L+L+ N+F  G      S++ +  L+ +V+S   +
Sbjct: 434 HSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL 488

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 77.0 bits (190), Expect = 4e-16
 Identities = 40/174 (22%), Positives = 68/174 (39%), Gaps = 7/174 (4%)

Query: 79  IEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSI-DYLKNLQSLVLLEKGLTGKLPIEPS 137
           + + +  +++    L+ L+     RL      S    L  L+ L L    L         
Sbjct: 389 LSLKTEAFKEC-PQLELLDLAFT-RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD 446

Query: 138 KLVNLRRLALAGNQI---NGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLD 194
            L  L+ L L GN     N Q   S+  L +L I  LS  +LS         L  +  +D
Sbjct: 447 GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVD 506

Query: 195 LSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPI 248
           LS+N L     + + +L  +  L+L SN+    L   +  +   + + +  NP+
Sbjct: 507 LSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPL 559

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.9 bits (143), Expect = 4e-10
 Identities = 25/186 (13%), Positives = 59/186 (31%), Gaps = 30/186 (16%)

Query: 92  SLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQ 151
           +L  L F     +       +   K L+SL L    ++     +      L+ L    N 
Sbjct: 106 ALKHLFFIQT-GISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA 164

Query: 152 INGQIPASIGGLTKL--LIFDLSRNNLS--------GSMLLTL----------------- 184
           I+      +  L +   L  +L+ N+++         ++  +L                 
Sbjct: 165 IHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKN 224

Query: 185 GKLARLLKLDLSYNNLQEKIPKEIGNLH--NVTFLDLRSNNFLGGLVGSIEEMVSLKEMV 242
             +  L        + ++  P     L   +V  ++L+ + F      +      L+E+ 
Sbjct: 225 STIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELD 284

Query: 243 VSNNPI 248
           ++   +
Sbjct: 285 LTATHL 290

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 4/123 (3%)

Query: 81  IPSSNWQKLANSLDSLEFGSN--PRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSK 138
                +  L  +L  L    N  P+       S+  L  L+ LVL    L+       + 
Sbjct: 440 SSEQLFDGL-PALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTS 498

Query: 139 LVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYN 198
           L  +  + L+ N++      ++  L K +  +L+ N++S  +   L  L++   ++L  N
Sbjct: 499 LKMMNHVDLSHNRLTSSSIEALSHL-KGIYLNLASNHISIILPSLLPILSQQRTINLRQN 557

Query: 199 NLQ 201
            L 
Sbjct: 558 PLD 560

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 78.4 bits (194), Expect = 6e-17
 Identities = 39/157 (24%), Positives = 66/157 (42%), Gaps = 11/157 (7%)

Query: 92  SLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQ 151
           SL       N   I  I   +  +  L SL +    +T   P+  + L  L  L +  NQ
Sbjct: 200 SLHYFTAYVNQ--ITDIT-PVANMTRLNSLKIGNNKITDLSPL--ANLSQLTWLEIGTNQ 254

Query: 152 INGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNL 211
           I+     ++  LTKL + ++  N +S   +  L  L++L  L L+ N L  +  + IG L
Sbjct: 255 ISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGL 310

Query: 212 HNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPI 248
            N+T L L  N+     +  +  +  +     +N  I
Sbjct: 311 TNLTTLFLSQNHITD--IRPLASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 76.0 bits (188), Expect = 4e-16
 Identities = 39/175 (22%), Positives = 74/175 (42%), Gaps = 16/175 (9%)

Query: 91  NSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGN 150
            S+  L        + +I   I+YL NL+ L L    +T   P+  S LV L  L +  N
Sbjct: 44  ESITKLVVAGEK--VASIQ-GIEYLTNLEYLNLNGNQITDISPL--SNLVKLTNLYIGTN 98

Query: 151 QINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGN 210
           +I     +++  LT L    L+ +N+S   +  L  L ++  L+L  N+        + N
Sbjct: 99  KIT--DISALQNLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNL-SDLSPLSN 153

Query: 211 LHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLE 265
           +  + +L +  +      V  I  +  L  + ++ N I    ++ +   +L +L 
Sbjct: 154 MTGLNYLTVTESKVKD--VTPIANLTDLYSLSLNYNQI--EDISPL--ASLTSLH 202

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 76.0 bits (188), Expect = 4e-16
 Identities = 34/175 (19%), Positives = 68/175 (38%), Gaps = 15/175 (8%)

Query: 92  SLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQ 151
            L SL    N   I  I   +  L +L         +T   P+  + +  L  L +  N+
Sbjct: 178 DLYSLSLNYNQ--IEDIS-PLASLTSLHYFTAYVNQITDITPV--ANMTRLNSLKIGNNK 232

Query: 152 INGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNL 211
           I    P  +  L++L   ++  N +S   +  +  L +L  L++  N + +     + NL
Sbjct: 233 ITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNL 286

Query: 212 HNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEI 266
             +  L L +N      +  I  + +L  + +S N I    +  +   +L  ++ 
Sbjct: 287 SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI--TDIRPL--ASLSKMDS 337

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 65.6 bits (161), Expect = 1e-12
 Identities = 34/177 (19%), Positives = 66/177 (37%), Gaps = 31/177 (17%)

Query: 110 TSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIF 169
                L      VL +  +T  +     +L ++ +L +AG ++   I   I  LT L   
Sbjct: 16  FPDADLAEGIRAVLQKASVTDVVTQ--EELESITKLVVAGEKVA-SIQG-IEYLTNLEYL 71

Query: 170 DLSRNNLSG--------------------SMLLTLGKLARLLKLDLSYNNLQEKIPKEIG 209
           +L+ N ++                     + +  L  L  L +L L+ +N+ +  P  + 
Sbjct: 72  NLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP--LA 129

Query: 210 NLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEI 266
           NL  +  L+L   N     +  +  M  L  + V+ + +    +  I   NL +L  
Sbjct: 130 NLTKMYSLNL-GANHNLSDLSPLSNMTGLNYLTVTESKV--KDVTPI--ANLTDLYS 181

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 58.3 bits (142), Expect = 4e-10
 Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 9/112 (8%)

Query: 92  SLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEP-SKLVNLRRLALAGN 150
            L  LE G+N   I  I  ++  L  L+ L +    ++    I   + L  L  L L  N
Sbjct: 244 QLTWLEIGTN--QISDIN-AVKDLTKLKMLNVGSNQISD---ISVLNNLSQLNSLFLNNN 297

Query: 151 QINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQE 202
           Q+  +    IGGLT L    LS+N+++   +  L  L+++   D +   +++
Sbjct: 298 QLGNEDMEVIGGLTNLTTLFLSQNHITD--IRPLASLSKMDSADFANQVIKK 347

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 17/104 (16%), Positives = 37/104 (35%), Gaps = 13/104 (12%)

Query: 162 GLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRS 221
           G   L       N +          LA  ++  L   ++ + +      L ++T L +  
Sbjct: 1   GAATLATLPAPINQIF-----PDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAG 53

Query: 222 NNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLE 265
                  +  IE + +L+ + ++ N I    ++ +   NL  L 
Sbjct: 54  EKVAS--IQGIEYLTNLEYLNLNGNQI--TDISPL--SNLVKLT 91

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 77.7 bits (192), Expect = 7e-17
 Identities = 34/176 (19%), Positives = 67/176 (38%), Gaps = 9/176 (5%)

Query: 92  SLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQ 151
           S+++L   +N   I  +  S    +  +++ L    +T    ++      ++ L L  N+
Sbjct: 100 SIETLHAANN--NISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE 155

Query: 152 ING-QIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGN 210
           I+             L   +L  N +    +      A+L  LDLS N L   +  E  +
Sbjct: 156 IDTVNFAELAASSDTLEHLNLQYNFIY--DVKGQVVFAKLKTLDLSSNKLAF-MGPEFQS 212

Query: 211 LHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEI 266
              VT++ L  NN L  +  ++    +L+   +  N    G L     +N +   +
Sbjct: 213 AAGVTWISL-RNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 71.2 bits (175), Expect = 1e-14
 Identities = 35/159 (22%), Positives = 61/159 (38%), Gaps = 12/159 (7%)

Query: 108 IPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLL 167
           I          +   + +  L   L        N++ L L+GN ++    A +   TKL 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 168 IFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGG 227
           + +LS N L     L L  L+ L  LDL+ N +Q     E+    ++  L   +NN +  
Sbjct: 62  LLNLSSNVL--YETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHA-ANNNISR 113

Query: 228 LVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEI 266
           +  S       K + ++NN I    L  +       ++ 
Sbjct: 114 V--SCSRGQGKKNIYLANNKI--TMLRDLDEGCRSRVQY 148

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 67.7 bits (166), Expect = 2e-13
 Identities = 31/146 (21%), Positives = 47/146 (32%), Gaps = 10/146 (6%)

Query: 80  EIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTG-KLPIEPSK 138
            +  S  Q       ++   +N ++             +Q L L    +         + 
Sbjct: 113 RVSCSRGQ----GKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS 167

Query: 139 LVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYN 198
              L  L L  N I   +   +    KL   DLS N L+  M       A +  + L  N
Sbjct: 168 SDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNN 224

Query: 199 NLQEKIPKEIGNLHNVTFLDLRSNNF 224
            L   I K +    N+   DLR N F
Sbjct: 225 KLVL-IEKALRFSQNLEHFDLRGNGF 249

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 49.6 bits (119), Expect = 3e-07
 Identities = 22/149 (14%), Positives = 47/149 (31%), Gaps = 7/149 (4%)

Query: 80  EIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKL 139
            +  +     +++L+ L    N   I  +   +     L++L L    L   +  E    
Sbjct: 158 TVNFAELAASSDTLEHLNLQYNF--IYDVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSA 213

Query: 140 VNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNN 199
             +  ++L  N++   I  ++     L  FDL  N      L      ++  ++      
Sbjct: 214 AGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDF--FSKNQRVQTVAKQ 270

Query: 200 LQEKIPKEIGNLHNVTFLDLRSNNFLGGL 228
             +K+  +      V  L          L
Sbjct: 271 TVKKLTGQNEEECTVPTLGHYGAYCCEDL 299

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 78.9 bits (195), Expect = 7e-17
 Identities = 36/191 (18%), Positives = 70/191 (36%), Gaps = 7/191 (3%)

Query: 80  EIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKL 139
            + S ++   +  L  L+      +      +   L +L +L+L    +    P   S L
Sbjct: 46  ILKSYSFSNFSE-LQWLDLSRC-EIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGL 103

Query: 140 VNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLL-TLGKLARLLKLDLSYN 198
            +L  L     ++       IG L  L   +++ N +    L      L  L+ +DLSYN
Sbjct: 104 TSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163

Query: 199 NLQEKIPKEIGNLHNVTFLDLR---SNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNG 255
            +Q     ++  L     ++L    S N +  +     + + L E+ +  N      +  
Sbjct: 164 YIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKT 223

Query: 256 IRWENLQNLEI 266
              +NL  L +
Sbjct: 224 C-LQNLAGLHV 233

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 74.7 bits (184), Expect = 2e-15
 Identities = 28/143 (19%), Positives = 47/143 (32%), Gaps = 3/143 (2%)

Query: 107 TIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKL 166
            +P  I    + +++ L    L        S    L+ L L+  +I      +  GL  L
Sbjct: 25  KVPDDI--PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHL 82

Query: 167 LIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLG 226
               L+ N +      +   L  L  L      L       IG L  +  L++  N    
Sbjct: 83  SNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS 142

Query: 227 -GLVGSIEEMVSLKEMVVSNNPI 248
             L      + +L  + +S N I
Sbjct: 143 CKLPAYFSNLTNLVHVDLSYNYI 165

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 71.2 bits (175), Expect = 3e-14
 Identities = 40/179 (22%), Positives = 62/179 (34%), Gaps = 11/179 (6%)

Query: 91  NSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGN 150
               SL        +   PT    L  L+SL L      G +  +   L +L  L L+ N
Sbjct: 307 FKWQSLSIIRC--QLKQFPTL--DLPFLKSLTL--TMNKGSISFKKVALPSLSYLDLSRN 360

Query: 151 QINGQIPAS--IGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKE- 207
            ++     S    G   L   DLS N     M      L  L  LD  ++ L+       
Sbjct: 361 ALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSA 419

Query: 208 IGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEI 266
             +L  + +LD+   N      G    + SL  + ++ N      L+ + + N  NL  
Sbjct: 420 FLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV-FANTTNLTF 477

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 69.7 bits (171), Expect = 1e-13
 Identities = 28/145 (19%), Positives = 49/145 (33%), Gaps = 3/145 (2%)

Query: 81  IPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLE-KGLTGKLPIEPSKL 139
              S +  L   L  L+                 L +L +L +         L    +  
Sbjct: 415 TEFSAFLSLEK-LLYLDISYT-NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANT 472

Query: 140 VNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNN 199
            NL  L L+  Q+          L +L + ++S NNL         +L  L  LD S+N 
Sbjct: 473 TNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR 532

Query: 200 LQEKIPKEIGNLHNVTFLDLRSNNF 224
           ++           ++ F +L +N+ 
Sbjct: 533 IETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 58.9 bits (143), Expect = 4e-10
 Identities = 37/177 (20%), Positives = 60/177 (33%), Gaps = 15/177 (8%)

Query: 80  EIPSSNWQKLAN----SLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKG--LTGKLP 133
            I  +  Q LA      L   EF     L    P+ ++ L ++                 
Sbjct: 219 NIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDI 278

Query: 134 IEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKL 193
           ++   L N+  ++LAG  I       +    K     + R  L          L  L  L
Sbjct: 279 VKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQ---FPTLDLPFLKSL 333

Query: 194 DLSYNNLQEKIPKEIGNLHNVTFLDLRSN--NFLGGLVGSIEEMVSLKEMVVSNNPI 248
            L+ N     I  +   L ++++LDL  N  +F G    S     SL+ + +S N  
Sbjct: 334 TLTMNKG--SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA 388

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 54.7 bits (132), Expect = 1e-08
 Identities = 26/187 (13%), Positives = 58/187 (31%), Gaps = 20/187 (10%)

Query: 91  NSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVL---LEKGLTGKLPIEPSKLVNLRRLAL 147
            +L  ++   N  +       + +L+    + L   +       +  +  + + L  L L
Sbjct: 153 TNLVHVDLSYN-YIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTL 211

Query: 148 AGNQINGQIPA-SIGGLTKLLIFDLSRN------NLSGSMLLTLGKLARL--LKLDLSYN 198
            GN  +  I    +  L  L +  L         NL       +  L  +   +  L+Y 
Sbjct: 212 RGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYT 271

Query: 199 NLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRW 258
           N       +   L NV+ + L   +     +  + +    + + +         L     
Sbjct: 272 NDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRC-----QLKQFPT 324

Query: 259 ENLQNLE 265
            +L  L+
Sbjct: 325 LDLPFLK 331

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.1 bits (102), Expect = 6e-05
 Identities = 17/97 (17%), Positives = 34/97 (35%), Gaps = 8/97 (8%)

Query: 154 GQIPASIGGLTKLLIFDLSRNNLSG--SMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNL 211
           G +   I  +   + +      LS     + +         +DLS+N L+        N 
Sbjct: 2   GSLNPCIEVVP-NITYQCMDQKLSKVPDDIPSS-----TKNIDLSFNPLKILKSYSFSNF 55

Query: 212 HNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPI 248
             + +LDL           +   +  L  ++++ NPI
Sbjct: 56  SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 92

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 76.3 bits (188), Expect = 6e-16
 Identities = 38/161 (23%), Positives = 65/161 (40%), Gaps = 6/161 (3%)

Query: 92  SLDSLEFGSNP-RLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGN 150
           SL+ L+   N     G    S     +L+ L L   G+   +      L  L  L    +
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHS 406

Query: 151 QINGQIPASI-GGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEI- 208
            +      S+   L  L+  D+S  +   +       L+ L  L ++ N+ QE    +I 
Sbjct: 407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 466

Query: 209 GNLHNVTFLDLRSNNFLGGL-VGSIEEMVSLKEMVVSNNPI 248
             L N+TFLDL S   L  L   +   + SL+ + +++N +
Sbjct: 467 TELRNLTFLDL-SQCQLEQLSPTAFNSLSSLQVLNMASNQL 506

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 67.8 bits (166), Expect = 4e-13
 Identities = 30/142 (21%), Positives = 53/142 (37%), Gaps = 3/142 (2%)

Query: 108 IPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLL 167
           IP ++    + ++L L    L             L+ L L+  +I      +   L+ L 
Sbjct: 22  IPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLS 79

Query: 168 IFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFL-G 226
              L+ N +    L     L+ L KL     NL       IG+L  +  L++  N     
Sbjct: 80  TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139

Query: 227 GLVGSIEEMVSLKEMVVSNNPI 248
            L      + +L+ + +S+N I
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKI 161

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 65.1 bits (159), Expect = 4e-12
 Identities = 36/145 (24%), Positives = 58/145 (40%), Gaps = 6/145 (4%)

Query: 83  SSNWQKLANSLDSLEFGSNPRLIGTIPTSI-DYLKNLQSLVLLEKGLTGKLPIEPSKLVN 141
           SSN+  L   L+ L+F  +  L      S+   L+NL  L +             + L +
Sbjct: 389 SSNFLGL-EQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446

Query: 142 LRRLALAGNQINGQIPASI-GGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNL 200
           L  L +AGN         I   L  L   DLS+  L          L+ L  L+++ N L
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506

Query: 201 QEKIPKEI-GNLHNVTFLDLRSNNF 224
           +  +P  I   L ++  + L +N +
Sbjct: 507 K-SVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 64.4 bits (157), Expect = 6e-12
 Identities = 48/201 (23%), Positives = 72/201 (35%), Gaps = 18/201 (8%)

Query: 81  IPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLV 140
           I    +Q L++ L +L    N  +      +   L +LQ LV +E  L          L 
Sbjct: 67  IEDGAYQSLSH-LSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 124

Query: 141 NLRRLALAGNQIN-GQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARL----LKLDL 195
            L+ L +A N I   ++P     LT L   DLS N +       L  L ++    L LDL
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184

Query: 196 SYNNLQEKIPKEIGNLHNVTFLDLRSN--------NFLGGLVGSIEEMVSLKEMVVSNN- 246
           S N +   I         +  L LR+N          + GL G     + L E     N 
Sbjct: 185 SLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243

Query: 247 -PIFGGGLNGIRWENLQNLEI 266
                  L G+    ++   +
Sbjct: 244 EKFDKSALEGLCNLTIEEFRL 264

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.0 bits (143), Expect = 3e-10
 Identities = 29/172 (16%), Positives = 58/172 (33%), Gaps = 11/172 (6%)

Query: 80  EIPSSNWQKLAN-SLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSK 138
           +   S  + L N +++          +  I    + L N+ S  L+   +        S 
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF--SY 302

Query: 139 LVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYN 198
               + L L   +        +  L +L     + N        +   L  L  LDLS N
Sbjct: 303 NFGWQHLELVNCKFGQFPTLKLKSLKRL---TFTSNKGGN--AFSEVDLPSLEFLDLSRN 357

Query: 199 NLQEK--IPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPI 248
            L  K    +      ++ +LDL S N +  +  +   +  L+ +   ++ +
Sbjct: 358 GLSFKGCCSQSDFGTTSLKYLDL-SFNGVITMSSNFLGLEQLEHLDFQHSNL 408

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 46.2 bits (110), Expect = 5e-06
 Identities = 22/113 (19%), Positives = 42/113 (37%), Gaps = 6/113 (5%)

Query: 92  SLDSLEFGSNPRLIGTIPTSI-DYLKNLQSLVLLEKGLTGKLPIE-PSKLVNLRRLALAG 149
           +L  L+              I + L +L+ L +           +  ++L NL  L L+ 
Sbjct: 422 NLIYLDISHTH--TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479

Query: 150 NQINGQIPASI-GGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQ 201
            Q+  Q+  +    L+ L + +++ N L         +L  L K+ L  N   
Sbjct: 480 CQLE-QLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 75.3 bits (185), Expect = 1e-15
 Identities = 42/160 (26%), Positives = 64/160 (40%), Gaps = 24/160 (15%)

Query: 89  LANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALA 148
           L N    L  G +   + T+P  +    ++ +LV+ +  LT  LP  P     LR L ++
Sbjct: 38  LNNGNAVLNVGESG--LTTLPDCL--PAHITTLVIPDNNLT-SLPALPP---ELRTLEVS 89

Query: 149 GNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEI 208
           GNQ+   +P    GL +L IF     +L           + L KL +  N L   +P   
Sbjct: 90  GNQLT-SLPVLPPGLLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQLTS-LPVLP 140

Query: 209 GNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPI 248
             L     L + S+N L  L     E+  L      NN +
Sbjct: 141 PGLQE---LSV-SDNQLASLPALPSELCKLW---AYNNQL 173

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 73.8 bits (181), Expect = 5e-15
 Identities = 37/170 (21%), Positives = 61/170 (35%), Gaps = 28/170 (16%)

Query: 92  SLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQ 151
            L  L    N   + ++P        L  L      LT  LP+ PS    L+ L+++ NQ
Sbjct: 142 GLQELSVSDNQ--LASLPALP---SELCKLWAYNNQLT-SLPMLPS---GLQELSVSDNQ 192

Query: 152 INGQIPASIGGLTKLLIFDLSRNNLSGSM----LLTLGK---------LARLLKLDLSYN 198
           +   +P     L KL  ++    +L         L +            + L +L +S N
Sbjct: 193 LA-SLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGN 251

Query: 199 NLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPI 248
            L   +P     L     L +  N  L  L  S+  + S   + +  NP+
Sbjct: 252 RLTS-LPMLPSGL---LSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNPL 296

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 74.1 bits (182), Expect = 3e-15
 Identities = 27/179 (15%), Positives = 60/179 (33%), Gaps = 26/179 (14%)

Query: 110 TSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIF 169
             +    ++++L      ++    +  S+    + + LA N+I        G  +++   
Sbjct: 93  QELLVGPSIETLHAANNNISR---VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYL 149

Query: 170 DLSRNNLSG-SMLLTLGKLARLLKLDLSYNNLQE---------------------KIPKE 207
           DL  N +   +          L  L+L YN + +                      +  E
Sbjct: 150 DLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPE 209

Query: 208 IGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEI 266
             +   VT++ L  NN L  +  ++    +L+   +  N    G L     +N +   +
Sbjct: 210 FQSAAGVTWISL-RNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 69.9 bits (171), Expect = 7e-14
 Identities = 34/141 (24%), Positives = 57/141 (40%), Gaps = 10/141 (7%)

Query: 108 IPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLL 167
           I          +   + +  L   L        N++ L L+GN ++    A +   TKL 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 168 IFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGG 227
           + +LS N L     L L  L+ L  LDL+ N +Q     E+    ++  L   +NN +  
Sbjct: 62  LLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHA-ANNNISR 113

Query: 228 LVGSIEEMVSLKEMVVSNNPI 248
           +  S       K + ++NN I
Sbjct: 114 V--SCSRGQGKKNIYLANNKI 132

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 64.5 bits (157), Expect = 5e-12
 Identities = 31/146 (21%), Positives = 47/146 (32%), Gaps = 10/146 (6%)

Query: 80  EIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTG-KLPIEPSK 138
            +  S  Q       ++   +N ++             +Q L L    +         + 
Sbjct: 113 RVSCSRGQ----GKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS 167

Query: 139 LVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYN 198
              L  L L  N I   +   +    KL   DLS N L+  M       A +  + L  N
Sbjct: 168 SDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNN 224

Query: 199 NLQEKIPKEIGNLHNVTFLDLRSNNF 224
            L   I K +    N+   DLR N F
Sbjct: 225 KLVL-IEKALRFSQNLEHFDLRGNGF 249

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 64.5 bits (157), Expect = 5e-12
 Identities = 24/127 (18%), Positives = 46/127 (36%), Gaps = 12/127 (9%)

Query: 139 LVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYN 198
               +   +  + +   + +       +   DLS N LS      L    +L  L+LS N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 199 NLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRW 258
            L E    ++ +L  +  LDL +N         +    S++ +  +NN I     + +  
Sbjct: 69  VLYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNI-----SRVSC 116

Query: 259 ENLQNLE 265
              Q  +
Sbjct: 117 SRGQGKK 123

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.8 bits (119), Expect = 4e-07
 Identities = 25/187 (13%), Positives = 58/187 (31%), Gaps = 8/187 (4%)

Query: 80  EIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKL 139
            +  +     +++L+ L    N   I  +   +     L++L L    L   +  E    
Sbjct: 158 TVNFAELAASSDTLEHLNLQYN--FIYDVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSA 213

Query: 140 VNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLS-GSMLLTLGKLARLLKLDLSYN 198
             +  ++L  N++   I  ++     L  FDL  N    G++     K  R+  +     
Sbjct: 214 AGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK--Q 270

Query: 199 NLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRW 258
            +++   +        T     +           + +++LK    +     G     +  
Sbjct: 271 TVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLEC 330

Query: 259 ENLQNLE 265
           E      
Sbjct: 331 ERENQAR 337

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 17/162 (10%), Positives = 44/162 (27%), Gaps = 7/162 (4%)

Query: 91  NSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGN 150
             +  +   +N   +  I  ++ + +NL+   L   G      +      N R   +A  
Sbjct: 214 AGVTWISLRNNK--LVLIEKALRFSQNLEHFDLRGNGFHC-GTLRDFFSKNQRVQTVAKQ 270

Query: 151 QINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQ----EKIPK 206
            +      +    T   +                 +L  L + + +  + Q    E++  
Sbjct: 271 TVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLEC 330

Query: 207 EIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPI 248
           E  N      +D     +   +        +   +      +
Sbjct: 331 ERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKAL 372

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 39.8 bits (93), Expect = 6e-04
 Identities = 15/153 (9%), Positives = 35/153 (22%), Gaps = 6/153 (3%)

Query: 91  NSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGN 150
            +L+  +   N            + KN +   + ++ +         +            
Sbjct: 237 QNLEHFDLRGNG--FHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAY 294

Query: 151 QINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGK----LARLLKLDLSYNNLQEKIPK 206
                       L  L   + +  +  GS    L       AR  ++D      +  I +
Sbjct: 295 CCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQ 354

Query: 207 EIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLK 239
                     L+ +       +         L 
Sbjct: 355 VTLRKQAKITLEQKKKALDEQVSNGRRAHAELD 387

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 71.9 bits (177), Expect = 2e-14
 Identities = 46/176 (26%), Positives = 74/176 (42%), Gaps = 18/176 (10%)

Query: 91  NSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGN 150
            SL  L FG+      T    +  L  L+ L +    ++    +  +KL NL  L    N
Sbjct: 156 TSLQQLSFGNQV----TDLKPLANLTTLERLDISSNKVSDISVL--AKLTNLESLIATNN 209

Query: 151 QINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGN 210
           QI+   P  +G LT L    L+ N L    + TL  L  L  LDL+ N +    P  +  
Sbjct: 210 QISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSG 263

Query: 211 LHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEI 266
           L  +T L L +N      +  +  + +L  + ++ N +    ++ I   NL+NL  
Sbjct: 264 LTKLTELKLGANQISN--ISPLAGLTALTNLELNENQL--EDISPI--SNLKNLTY 313

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 69.2 bits (170), Expect = 1e-13
 Identities = 34/173 (19%), Positives = 66/173 (38%), Gaps = 13/173 (7%)

Query: 92  SLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQ 151
           +L  L+  +N   I  +   +  L  L  L L    ++   P+  + L  L  L L  NQ
Sbjct: 244 NLTDLDLANNQ--ISNLA-PLSGLTKLTELKLGANQISNISPL--AGLTALTNLELNENQ 298

Query: 152 INGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNL 211
           +    P  I  L  L    L  NN+S   +  +  L +L +L    N + +     + NL
Sbjct: 299 LEDISP--ISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFYNNKVSD--VSSLANL 352

Query: 212 HNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNL 264
            N+ +L    N      +  +  +  + ++ +++       +N     ++ N 
Sbjct: 353 TNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNT 403

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 68.1 bits (167), Expect = 3e-13
 Identities = 39/179 (21%), Positives = 68/179 (37%), Gaps = 31/179 (17%)

Query: 107 TIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKL 166
                ++YL NL  +      LT   P+    L  L  + +  NQI    P  +  LT L
Sbjct: 59  KSIDGVEYLNNLTQINFSNNQLTDITPL--KNLTKLVDILMNNNQIADITP--LANLTNL 114

Query: 167 LIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIP-------------------KE 207
               L  N ++   +  L  L  L +L+LS N + +                      K 
Sbjct: 115 TGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKP 172

Query: 208 IGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEI 266
           + NL  +  LD+ SN      +  + ++ +L+ ++ +NN I    +  +    L NL+ 
Sbjct: 173 LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQI--SDITPL--GILTNLDE 225

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 66.9 bits (164), Expect = 7e-13
 Identities = 30/149 (20%), Positives = 59/149 (39%), Gaps = 11/149 (7%)

Query: 100 SNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPAS 159
           +    I  I  +   L      VL +  +T  +    + L  +  L      I       
Sbjct: 9   TQDTPINQI-FTDTALAEKMKTVLGKTNVTDTVSQ--TDLDQVTTLQADRLGIK--SIDG 63

Query: 160 IGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDL 219
           +  L  L   + S N L+   +  L  L +L+ + ++ N + +  P  + NL N+T L L
Sbjct: 64  VEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 119

Query: 220 RSNNFLGGLVGSIEEMVSLKEMVVSNNPI 248
            +N      +  ++ + +L  + +S+N I
Sbjct: 120 FNNQITD--IDPLKNLTNLNRLELSSNTI 146

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 59.6 bits (145), Expect = 2e-10
 Identities = 35/158 (22%), Positives = 60/158 (37%), Gaps = 11/158 (6%)

Query: 91  NSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGN 150
            +L +LE   N   +  I   I  LKNL  L L    ++   P+  S L  L+RL    N
Sbjct: 287 TALTNLELNENQ--LEDIS-PISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLFFYNN 341

Query: 151 QINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGN 210
           +++    +S+  LT +       N +S   L  L  L R+ +L L+             N
Sbjct: 342 KVSD--VSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKAN 397

Query: 211 LHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPI 248
           +     +   +   +     +I +  S  E  ++ N  
Sbjct: 398 VSIPNTVKNVTGALI--APATISDGGSYTEPDITWNLP 433

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 58.1 bits (141), Expect = 6e-10
 Identities = 21/129 (16%), Positives = 49/129 (37%), Gaps = 12/129 (9%)

Query: 137 SKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLS 196
           + L    +  L    +   +      L ++      R  +    +  +  L  L +++ S
Sbjct: 21  TALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFS 76

Query: 197 YNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGI 256
            N L +  P  + NL  +  + + +N      +  +  + +L  + + NN I    ++ +
Sbjct: 77  NNQLTDITP--LKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQI--TDIDPL 130

Query: 257 RWENLQNLE 265
             +NL NL 
Sbjct: 131 --KNLTNLN 137

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.3 bits (121), Expect = 2e-07
 Identities = 22/117 (18%), Positives = 50/117 (42%), Gaps = 12/117 (10%)

Query: 150 NQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIG 209
             IN QI  +   L + +   L + N++    ++   L ++  L      +  K    + 
Sbjct: 12  TPIN-QIF-TDTALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGI--KSIDGVE 65

Query: 210 NLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEI 266
            L+N+T ++  +N      +  ++ +  L +++++NN I    +  +   NL NL  
Sbjct: 66  YLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQI--ADITPL--ANLTNLTG 116

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 14/120 (11%), Positives = 35/120 (29%), Gaps = 5/120 (4%)

Query: 107 TIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKL 166
           +  +S+  L N+  L      ++   P+  + L  + +L L         P +      +
Sbjct: 344 SDVSSLANLTNINWLSAGHNQISDLTPL--ANLTRITQLGLNDQAWTN-APVNYKANVSI 400

Query: 167 LIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLG 226
                +          T+       + D+++N       +          +   +  F G
Sbjct: 401 PNTVKNVTGAL-IAPATISDGGSYTEPDITWNLPSY-TNEVSYTFSQPVTIGKGTTTFSG 458

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 70.4 bits (173), Expect = 2e-14
 Identities = 37/176 (21%), Positives = 67/176 (38%), Gaps = 9/176 (5%)

Query: 77  SPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEP 136
           S     S +     + L  L+   N   + T+ ++   L+ L+ L      L        
Sbjct: 65  SFKGCCSQSDFGTTS-LKYLDLSFNG--VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 121

Query: 137 -SKLVNLRRLALAGNQINGQIPASI-GGLTKLLIFDLSRNNLSGSML-LTLGKLARLLKL 193
              L NL  L ++           I  GL+ L +  ++ N+   + L     +L  L  L
Sbjct: 122 FLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 180

Query: 194 DLSYNNLQEKIPKEI-GNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPI 248
           DLS   L++ +      +L ++  L++  NNF        + + SL+ +  S N I
Sbjct: 181 DLSQCQLEQ-LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 54.2 bits (131), Expect = 8e-09
 Identities = 25/112 (22%), Positives = 42/112 (37%), Gaps = 6/112 (5%)

Query: 141 NLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSML--LTLGKLARLLKLDLSYN 198
           +  RL L  N++          LT+L    LS N LS       +      L  LDLS+N
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 199 NLQEKIPKEIGNLHNVTFLDLRSNNFLGGL--VGSIEEMVSLKEMVVSNNPI 248
            +   +      L  +  LD + +N L  +        + +L  + +S+   
Sbjct: 89  GVIT-MSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHT 138

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 49.6 bits (119), Expect = 3e-07
 Identities = 27/114 (23%), Positives = 44/114 (38%), Gaps = 7/114 (6%)

Query: 92  SLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEP---SKLVNLRRLALA 148
           SL+ L+   N      +P     L+NL  L L +  L     + P   + L +L+ L ++
Sbjct: 151 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ---LSPTAFNSLSSLQVLNMS 207

Query: 149 GNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLK-LDLSYNNLQ 201
            N            L  L + D S N++  S    L      L  L+L+ N+  
Sbjct: 208 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 68.8 bits (168), Expect = 1e-13
 Identities = 37/182 (20%), Positives = 66/182 (36%), Gaps = 14/182 (7%)

Query: 75  LQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPI 134
             +     +   Q L   L  L        +      +     L +L L +    G+  +
Sbjct: 133 WATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQVRVFPALSTLDLSDNPELGERGL 191

Query: 135 E----PSKLVNLRRLALAGNQIN---GQIPASIGGLTKLLIFDLSRNNLSGS-MLLTLGK 186
                P K   L+ LAL    +    G   A      +L   DLS N+L  +    +   
Sbjct: 192 ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251

Query: 187 LARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNN 246
            ++L  L+LS+  L++ +PK +     ++ LDL  N        S +E+  +  + +  N
Sbjct: 252 PSQLNSLNLSFTGLKQ-VPKGL--PAKLSVLDLSYNRLDR--NPSPDELPQVGNLSLKGN 306

Query: 247 PI 248
           P 
Sbjct: 307 PF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 53.0 bits (127), Expect = 2e-08
 Identities = 28/181 (15%), Positives = 58/181 (32%), Gaps = 14/181 (7%)

Query: 77  SPIEIPSSNWQKLAN-SLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIE 135
           +P  +  +    L   +L ++ + +    +  +   +     L+ L + +         +
Sbjct: 111 APPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWL--KPGLKVLSIAQAHSLNFSCEQ 168

Query: 136 PSKLVNLRRLALAGNQINGQIP----ASIGGLTKLLIFDLSRNN---LSGSMLLTLGKLA 188
                 L  L L+ N   G+              L +  L        SG          
Sbjct: 169 VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV 228

Query: 189 RLLKLDLSYNNLQEKIPKEI-GNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNP 247
           +L  LDLS+N+L++            +  L+L S   L  +   +     L  + +S N 
Sbjct: 229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNL-SFTGLKQVPKGLPA--KLSVLDLSYNR 285

Query: 248 I 248
           +
Sbjct: 286 L 286

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 69.4 bits (170), Expect = 1e-13
 Identities = 46/189 (24%), Positives = 78/189 (41%), Gaps = 16/189 (8%)

Query: 92  SLDSLEFGSNPRLIGTIP-TSIDYLKNLQSLVLLEKGLTGKLPIEP-SKLVNLRRLALAG 149
           + + L    N   I T+  +S  +L+ LQ L L  +     +  E    L NLR L L  
Sbjct: 25  TTERLLLSFN--YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82

Query: 150 NQINGQIPASIGGLTKLLIFDLSRNNLSGSML--LTLGKLARLLKLDLSYNNLQE-KIPK 206
           ++I    P +  GL  L    L    LS ++L       L  L +LDLS N ++   +  
Sbjct: 83  SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHP 142

Query: 207 EIGNLHNVTFLDLRSNNFLGGLVGSIE--EMVSLKEMVVSNNPI-------FGGGLNGIR 257
             G L+++  +D  SN         +E  +  +L    ++ N +       +G  +N  R
Sbjct: 143 SFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFR 202

Query: 258 WENLQNLEI 266
              L+ L++
Sbjct: 203 NMVLEILDV 211

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 60.2 bits (146), Expect = 2e-10
 Identities = 28/134 (20%), Positives = 49/134 (36%), Gaps = 4/134 (2%)

Query: 136 PSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSM-LLTLGKLARLLKLD 194
           P  L    RL L+ N I     +S   L +L + +L       ++       L  L  LD
Sbjct: 20  PQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILD 79

Query: 195 LSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLV--GSIEEMVSLKEMVVSNNPIFGGG 252
           L  + +    P     L ++  L L        ++  G    + +L  + +S N I    
Sbjct: 80  LGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY 139

Query: 253 LNGIRWENLQNLEI 266
           L+   +  L +L+ 
Sbjct: 140 LHPS-FGKLNSLKS 152

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 58.3 bits (141), Expect = 6e-10
 Identities = 46/202 (22%), Positives = 71/202 (35%), Gaps = 21/202 (10%)

Query: 81  IPSSNWQKLANSLDSLEFGSNPRLIGTIPTSI-DYLKNLQSLVLLEKGLTGKLPIEPSKL 139
           + S  ++ L + L  L    N   I  I       L NLQ L L    L          L
Sbjct: 281 LNSRVFETLKD-LKVLNLAYN--KINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGL 337

Query: 140 VNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRN--------------NLSGSMLLTLG 185
             +  + L  N I      +   L KL   DL  N               LSG+ L+TL 
Sbjct: 338 PKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLP 397

Query: 186 KLA-RLLKLDLSYNNLQE-KIPKEIGNLHNVTFLDLRSNNFLG-GLVGSIEEMVSLKEMV 242
           K+      + LS N L+   I   +  + ++  L L  N F       +  E  SL+++ 
Sbjct: 398 KINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLF 457

Query: 243 VSNNPIFGGGLNGIRWENLQNL 264
           +  N +       + W+  + L
Sbjct: 458 LGENMLQLAWETELCWDVFEGL 479

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 57.1 bits (138), Expect = 2e-09
 Identities = 26/139 (18%), Positives = 48/139 (34%), Gaps = 9/139 (6%)

Query: 117 NLQSLVLLEKGLTG-KLPIEPSKLVNLRRLALAGNQING-QIPASIGGLTKLLIFDLSRN 174
               + L E  L    +     ++ +L+ L L  N+ +      +      L    L  N
Sbjct: 402 TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGEN 461

Query: 175 NLSGSMLL-----TLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLV 229
            L  +            L+ L  L L++N L    P    +L  +  L L SN      +
Sbjct: 462 MLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV--L 519

Query: 230 GSIEEMVSLKEMVVSNNPI 248
              +   +L+ + +S N +
Sbjct: 520 SHNDLPANLEILDISRNQL 538

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 48.6 bits (116), Expect = 9e-07
 Identities = 37/211 (17%), Positives = 71/211 (33%), Gaps = 25/211 (11%)

Query: 77  SPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTG--KLPI 134
           S   +    ++ L   L  L+   N      +  S   L +L+S+      +    +  +
Sbjct: 110 SDAVLKDGYFRNLKA-LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHEL 168

Query: 135 EPSKLVNLRRLALAGNQINGQIPASIGGLTKLL------IFDLSRN------------NL 176
           EP +   L   +LA N +  ++    G            I D+S N             +
Sbjct: 169 EPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAI 228

Query: 177 SGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLH--NVTFLDLRSNNFLGGLVGSIEE 234
           S S   +L     ++     ++N+++        L   +V  LDL             E 
Sbjct: 229 SKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFET 288

Query: 235 MVSLKEMVVSNNPIFGGGLNGIRWENLQNLE 265
           +  LK + ++ N I    +    +  L NL+
Sbjct: 289 LKDLKVLNLAYNKIN--KIADEAFYGLDNLQ 317

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 47.1 bits (112), Expect = 4e-06
 Identities = 34/150 (22%), Positives = 54/150 (36%), Gaps = 10/150 (6%)

Query: 81  IPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVL----LEKGLTGKLPIEP 136
           +    +      L  L    N     +   +     +L+ L L    L+     +L  + 
Sbjct: 416 LDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDV 475

Query: 137 -SKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDL 195
              L +L+ L L  N +N   P     LT L    L+ N L+  +L      A L  LD+
Sbjct: 476 FEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT--VLSHNDLPANLEILDI 533

Query: 196 SYNNLQEKIPKEIGNLHNVTFLDLRSNNFL 225
           S N L    P    +L  +   D+  N F+
Sbjct: 534 SRNQLLAPNPDVFVSLSVL---DITHNKFI 560

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 67.7 bits (166), Expect = 3e-13
 Identities = 41/196 (20%), Positives = 69/196 (35%), Gaps = 17/196 (8%)

Query: 80  EIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKL 139
           ++P   +  L  +++ +E G NP               L  L + E  LTG   I     
Sbjct: 137 KVPKGVFSGL-RNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG---IPKDLP 192

Query: 140 VNLRRLALAGNQINGQIPA-SIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYN 198
             L  L L  N+I   I    +   +KL    L  N +      +L  L  L +L L  N
Sbjct: 193 ETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN 251

Query: 199 NLQEKIPKEIGNLHNVTFLDLRSNN--------FLGGLVGSIEEMVSLKEMVVSNNPIFG 250
            L   +P  + +L  +  + L +NN        F    VG   +      + + NNP+  
Sbjct: 252 KLSR-VPAGLPDLKLLQVVYLHTNNITKVGVNDFCP--VGFGVKRAYYNGISLFNNPVPY 308

Query: 251 GGLNGIRWENLQNLEI 266
             +    +  + +   
Sbjct: 309 WEVQPATFRCVTDRLA 324

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 49.6 bits (119), Expect = 3e-07
 Identities = 28/143 (19%), Positives = 49/143 (34%), Gaps = 18/143 (12%)

Query: 92  SLDSLEFGSNPRLIGTIPT-SIDYLKNLQSLVLLEKGLTGKLPIEP---SKLVNLRRLAL 147
           +L+ L    N   I  I    +     L  L L    +     IE    S L  LR L L
Sbjct: 194 TLNELHLDHNK--IQAIELEDLLRYSKLYRLGLGHNQIRM---IENGSLSFLPTLRELHL 248

Query: 148 AGNQINGQIPASIGGLTKLLIFDLSRNNLSG------SMLLTLGKLARLLKLDLSYNNLQ 201
             N+++ ++PA +  L  L +  L  NN++         +    K A    + L  N + 
Sbjct: 249 DNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307

Query: 202 EK-IPKEI-GNLHNVTFLDLRSN 222
              +       + +   +   + 
Sbjct: 308 YWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 24/146 (16%), Positives = 57/146 (39%), Gaps = 17/146 (11%)

Query: 109 PTSIDYLKNLQSLVLLEKGLTGKLPIEP---SKLVNLRRLALAGNQINGQIPASIGGLTK 165
                 L++L +LVL+   ++    I     S L  L++L ++ N +  +IP ++   + 
Sbjct: 71  KDDFKGLQHLYALVLVNNKISK---IHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSS 124

Query: 166 LLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQE-KIPKEIGNLHNVTFLDLRSNNF 224
           L+   +  N +          L  +  +++  N L+         +   + +L +     
Sbjct: 125 LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKL 184

Query: 225 LGGLVGSIEEMV--SLKEMVVSNNPI 248
                  I + +  +L E+ + +N I
Sbjct: 185 -----TGIPKDLPETLNELHLDHNKI 205

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 39.2 bits (92), Expect = 8e-04
 Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 3/83 (3%)

Query: 141 NLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNL 200
           +LR +  +   +   +P  I   T LL  DL  N++S         L  L  L L  N +
Sbjct: 34  HLRVVQCSDLGLK-AVPKEISPDTTLL--DLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 201 QEKIPKEIGNLHNVTFLDLRSNN 223
            +   K    L  +  L +  N+
Sbjct: 91  SKIHEKAFSPLRKLQKLYISKNH 113

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 67.9 bits (166), Expect = 3e-13
 Identities = 42/159 (26%), Positives = 67/159 (42%), Gaps = 6/159 (3%)

Query: 92  SLDSLEFGSNPRLIGTIPTSI-DYLKNLQSLVLLEKGLTGKLPIEP-SKLVNLRRLALAG 149
            L  L   +NP  I +IP+   + + +L+ L L E      +       L NLR L LA 
Sbjct: 137 KLKELWLRNNP--IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM 194

Query: 150 NQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIG 209
             +  +IP  +  L KL   DLS N+LS     +   L  L KL +  + +Q        
Sbjct: 195 CNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFD 252

Query: 210 NLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPI 248
           NL ++  ++L  NN           +  L+ + + +NP 
Sbjct: 253 NLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 60.5 bits (147), Expect = 1e-10
 Identities = 32/144 (22%), Positives = 57/144 (39%), Gaps = 5/144 (3%)

Query: 107 TIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKL 166
            +P  I    N + L L E  +          L +L  L L+ N I      +  GL  L
Sbjct: 57  EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANL 114

Query: 167 LIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEI-GNLHNVTFLDLRSNNFL 225
              +L  N L+         L++L +L L  N ++  IP      + ++  LDL     L
Sbjct: 115 NTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES-IPSYAFNRIPSLRRLDLGELKRL 173

Query: 226 GGL-VGSIEEMVSLKEMVVSNNPI 248
             +  G+ E + +L+ + ++   +
Sbjct: 174 SYISEGAFEGLSNLRYLNLAMCNL 197

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 27/123 (21%), Positives = 48/123 (39%), Gaps = 6/123 (4%)

Query: 80  EIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEP-SK 138
            I    ++ L+N L  L        +  IP  +  L  L  L L    L+  +       
Sbjct: 175 YISEGAFEGLSN-LRYLNLAMC--NLREIPN-LTPLIKLDELDLSGNHLS-AIRPGSFQG 229

Query: 139 LVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYN 198
           L++L++L +  +QI      +   L  L+  +L+ NNL+         L  L ++ L +N
Sbjct: 230 LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

Query: 199 NLQ 201
              
Sbjct: 290 PWN 292

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 67.8 bits (166), Expect = 3e-13
 Identities = 35/159 (22%), Positives = 60/159 (37%), Gaps = 6/159 (3%)

Query: 92  SLDSLEFGSNPRLIGTIPTSI-DYLKNLQSLVLLEKGLTGKLPIEP-SKLVNLRRLALAG 149
            L  L   +NP  I +IP+   + + +L  L L E      +       L NL+ L L  
Sbjct: 148 KLRELWLRNNP--IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM 205

Query: 150 NQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIG 209
             I   +P  +  L  L   ++S N+       +   L+ L KL +  + +         
Sbjct: 206 CNIK-DMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFD 263

Query: 210 NLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPI 248
            L ++  L+L  NN           +  L E+ + +NP 
Sbjct: 264 GLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 53.6 bits (129), Expect = 2e-08
 Identities = 27/107 (25%), Positives = 39/107 (36%), Gaps = 2/107 (1%)

Query: 141 NLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNL 200
           N R L L  N I      +   L  L +  L RN++    +     LA L  L+L  N L
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135

Query: 201 QEKIPKEI-GNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNN 246
              IP      L  +  L LR+N        +   + SL  + +   
Sbjct: 136 TV-IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGEL 181

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 46.3 bits (110), Expect = 4e-06
 Identities = 29/122 (23%), Positives = 49/122 (40%), Gaps = 4/122 (3%)

Query: 80  EIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKL 139
            I    ++ L N L  L  G     I  +P  +  L  L+ L +         P     L
Sbjct: 186 YISEGAFEGLFN-LKYLNLGMC--NIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGL 241

Query: 140 VNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNN 199
            +L++L +  +Q++     +  GL  L+  +L+ NNLS         L  L++L L +N 
Sbjct: 242 SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301

Query: 200 LQ 201
             
Sbjct: 302 WN 303

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 67.4 bits (165), Expect = 6e-13
 Identities = 40/172 (23%), Positives = 73/172 (42%), Gaps = 8/172 (4%)

Query: 80  EIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSI-DYLKNLQSLVLLEKGLTGKLPIEP-S 137
            IP   +  L+N L  L+   N   I  +   +   L NL+SL + +  L   +     S
Sbjct: 94  LIPLGVFTGLSN-LTKLDISEN--KIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFS 149

Query: 138 KLVNLRRLALAGNQINGQIPA-SIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLS 196
            L +L +L L    +   IP  ++  L  L++  L   N++     +  +L RL  L++S
Sbjct: 150 GLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS 208

Query: 197 YNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPI 248
           +    + +        N+T L +   N       ++  +V L+ + +S NPI
Sbjct: 209 HWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI 260

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 63.2 bits (154), Expect = 1e-11
 Identities = 32/160 (20%), Positives = 59/160 (36%), Gaps = 5/160 (3%)

Query: 91  NSLDSLEFGSNPRLIGTIPT-SIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAG 149
           NSL+ L        + +IPT ++ +L  L  L L    +         +L  L+ L ++ 
Sbjct: 152 NSLEQLTLEKC--NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH 209

Query: 150 NQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEI- 208
                 +  +      L    ++  NL+    L +  L  L  L+LSYN +   I   + 
Sbjct: 210 WPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST-IEGSML 268

Query: 209 GNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPI 248
             L  +  + L           +   +  L+ + VS N +
Sbjct: 269 HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL 308

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 49.3 bits (118), Expect = 5e-07
 Identities = 29/127 (22%), Positives = 51/127 (40%), Gaps = 10/127 (7%)

Query: 79  IEIPSSNWQKLANSLDSLEFGSNPRLIGTIPT-SIDYLKNLQSLVLLEKGLTGKLPIEP- 136
           ++  + N     N L SL        +  +P  ++ +L  L+ L L    ++    IE  
Sbjct: 213 LDTMTPNCLYGLN-LTSLSITHCN--LTAVPYLAVRHLVYLRFLNLSYNPIST---IEGS 266

Query: 137 --SKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLD 194
              +L+ L+ + L G Q+    P +  GL  L + ++S N L+         +  L  L 
Sbjct: 267 MLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLI 326

Query: 195 LSYNNLQ 201
           L  N L 
Sbjct: 327 LDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 28/113 (24%), Positives = 44/113 (38%), Gaps = 8/113 (7%)

Query: 136 PSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDL 195
             + V   R           +P  I   T+LL  DL +N +             L +L+L
Sbjct: 12  QDRAVLCHRKRFV------AVPEGIPTETRLL--DLGKNRIKTLNQDEFASFPHLEELEL 63

Query: 196 SYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPI 248
           + N +    P    NL N+  L LRSN      +G    + +L ++ +S N I
Sbjct: 64  NENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKI 116

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 66.4 bits (162), Expect = 9e-13
 Identities = 41/183 (22%), Positives = 69/183 (37%), Gaps = 27/183 (14%)

Query: 78  PIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSID--YLKNLQSLVLLEKGLTGKLPIE 135
           P  +PS            L+   N   +  +        L NL SL+L    L     I 
Sbjct: 34  PQSLPSY--------TALLDLSHNN--LSRLRAEWTPTRLTNLHSLLLSHNHLNF---IS 80

Query: 136 P---SKLVNLRRLALAGNQINGQIPASI-GGLTKLLIFDLSRNNLSGSMLLTLGKLARLL 191
                 + NLR L L+ N ++  +   +   L  L +  L  N++          +A+L 
Sbjct: 81  SEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQ 139

Query: 192 KLDLSYNNLQEKIPKEI----GNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVS--N 245
           KL LS N +    P E+      L  +  LDL SN      +  ++++ +  +  +   N
Sbjct: 140 KLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198

Query: 246 NPI 248
           NP+
Sbjct: 199 NPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 60.2 bits (146), Expect = 1e-10
 Identities = 35/149 (23%), Positives = 60/149 (40%), Gaps = 12/149 (8%)

Query: 107 TIPTSIDYLKNLQSLVLLEKGLTGKLPIE--PSKLVNLRRLALAGNQINGQIPASI-GGL 163
            +P S+        L L    L+ +L  E  P++L NL  L L+ N +N  I +     +
Sbjct: 32  NVPQSLP--SYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPV 87

Query: 164 TKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEI-GNLHNVTFLDLRSN 222
             L   DLS N+L          L  L  L L  N++   + +    ++  +  L L  N
Sbjct: 88  PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQN 146

Query: 223 N---FLGGLVGSIEEMVSLKEMVVSNNPI 248
               F   L+    ++  L  + +S+N +
Sbjct: 147 QISRFPVELIKDGNKLPKLMLLDLSSNKL 175

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 66.5 bits (162), Expect = 1e-12
 Identities = 36/195 (18%), Positives = 64/195 (32%), Gaps = 25/195 (12%)

Query: 92  SLDSLEFGSNPRLIGTIPTSIDYLKNLQ-----------SLVLLEK-GLTG-KLPIEPSK 138
           SL+ L+   N   + T+P     LK+L               LLE       +L + P  
Sbjct: 101 SLEYLDACDN--RLSTLPELPASLKHLDVDNNQLTMLPELPALLEYINADNNQLTMLPEL 158

Query: 139 LVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSG--SMLLTLGKLARLLK-LDL 195
             +L  L++  NQ+   +P     L  L   D+S N L    ++ +              
Sbjct: 159 PTSLEVLSVRNNQLT-FLPELPESLEAL---DVSTNLLESLPAVPVRNHHSEETEIFFRC 214

Query: 196 SYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNN--PIFGGGL 253
             N +   IP+ I +L     + L  N     +  S+ +  +  +         +  G  
Sbjct: 215 RENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQ 273

Query: 254 NGIRWENLQNLEIWI 268
           N +       +  W 
Sbjct: 274 NTLHRPLADAVTAWF 288

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 48.4 bits (115), Expect = 1e-06
 Identities = 18/100 (18%), Positives = 37/100 (37%), Gaps = 11/100 (11%)

Query: 150 NQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIG 209
           +       ++     K  +   +RN      LL    + +  +L L+  NL   +P  + 
Sbjct: 23  SGTYADYFSAWDKWEKQALPGENRNEAVS--LLKECLINQFSELQLNRLNLSS-LPDNLP 79

Query: 210 NLHNVTFLDLRSNNFLGGLVGSI-EEMVSLKEMVVSNNPI 248
               +T L++  N        S+ E   SL+ +   +N +
Sbjct: 80  P--QITVLEITQNAL-----ISLPELPASLEYLDACDNRL 112

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 40.0 bits (93), Expect = 6e-04
 Identities = 20/139 (14%), Positives = 43/139 (30%), Gaps = 9/139 (6%)

Query: 91  NSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTG----KLPIEPSKLVNLRRLA 146
            SL++L+  +N  L+ ++P       + +    +           +P     L     + 
Sbjct: 180 ESLEALDVSTN--LLESLPAVPVRNHHSEET-EIFFRCRENRITHIPENILSLDPTCTII 236

Query: 147 LAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPK 206
           L  N ++ +I  S+   T     D     +  SM             D       E    
Sbjct: 237 LEDNPLSSRIRESLSQQTAQP--DYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQS 294

Query: 207 EIGNLHNVTFLDLRSNNFL 225
           ++  + +    +  +N F 
Sbjct: 295 DVSQIWHAFEHEEHANTFS 313

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 66.0 bits (161), Expect = 1e-12
 Identities = 37/161 (22%), Positives = 72/161 (44%), Gaps = 11/161 (6%)

Query: 92  SLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPS---KLVNLRRLALA 148
               L+F +N  L  T+  +  +L  L++L+L    L  +L        ++ +L++L ++
Sbjct: 325 PFLHLDFSNN-LLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDIS 382

Query: 149 GNQINGQIPASI-GGLTKLLIFDLSRNNLSGSMLLTLGKLARLLK-LDLSYNNLQEKIPK 206
            N ++             LL  ++S N L+         L   +K LDL  N ++  IPK
Sbjct: 383 QNSVSYDEKKGDCSWTKSLLSLNMSSNILTD---TIFRCLPPRIKVLDLHSNKIKS-IPK 438

Query: 207 EIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNP 247
           ++  L  +  L++ SN       G  + + SL+++ +  NP
Sbjct: 439 QVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNP 479

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 59.9 bits (145), Expect = 2e-10
 Identities = 26/159 (16%), Positives = 59/159 (37%), Gaps = 4/159 (2%)

Query: 110 TSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIF 169
           T++ Y  ++ ++ L  +          + L  L    +  +             + + I 
Sbjct: 247 TTVWYF-SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIK 305

Query: 170 DLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNF--LGG 227
           + + +      +L   K++  L LD S N L + + +  G+L  +  L L+ N    L  
Sbjct: 306 NFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSK 365

Query: 228 LVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEI 266
           +     +M SL+++ +S N +             ++L  
Sbjct: 366 IAEMTTQMKSLQQLDISQNSV-SYDEKKGDCSWTKSLLS 403

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 58.7 bits (142), Expect = 4e-10
 Identities = 30/148 (20%), Positives = 63/148 (42%), Gaps = 8/148 (5%)

Query: 80  EIPSSNWQKLANSLDSLEFGSNP-RLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEP-S 137
           +    N   L   L++L    N  + +  I      +K+LQ L + +  ++        S
Sbjct: 338 DTVFENCGHLTE-LETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS 396

Query: 138 KLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSY 197
              +L  L ++ N +   I   +    ++ + DL  N +  S+   + KL  L +L+++ 
Sbjct: 397 WTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVAS 453

Query: 198 NNLQEKIPKEI-GNLHNVTFLDLRSNNF 224
           N L+  +P  I   L ++  + L +N +
Sbjct: 454 NQLKS-VPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 58.0 bits (140), Expect = 7e-10
 Identities = 34/131 (25%), Positives = 50/131 (38%), Gaps = 8/131 (6%)

Query: 137 SKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLS 196
             L  LR L ++ N+I     +      +L   DLS N L     ++      L  LDLS
Sbjct: 42  LSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK---ISCHPTVNLKHLDLS 98

Query: 197 YNNLQE-KIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIF----GG 251
           +N      I KE GN+  + FL L + +     V  I  +   K ++V            
Sbjct: 99  FNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPE 158

Query: 252 GLNGIRWENLQ 262
           GL     E+L 
Sbjct: 159 GLQDFNTESLH 169

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 39.5 bits (92), Expect = 7e-04
 Identities = 19/119 (15%), Positives = 31/119 (26%), Gaps = 3/119 (2%)

Query: 111 SIDYLKNLQSLVLLEKGLTG-KLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIF 169
           S     NL+ L L         +  E   +  L+ L L+   +       I  L    + 
Sbjct: 85  SCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVL 144

Query: 170 DLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGL 228
            +               L       L       K    I ++   T  +L  +N    L
Sbjct: 145 LVLGETYGEK--EDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVL 201

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 66.0 bits (161), Expect = 2e-12
 Identities = 39/160 (24%), Positives = 66/160 (41%), Gaps = 9/160 (5%)

Query: 92  SLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQ 151
           S   L F  N     ++      LK LQ+L+L   GL            N+  L      
Sbjct: 354 SFTFLNFTQN-VFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVS 411

Query: 152 IN----GQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKE 207
           +N         +      +L+ +LS N L+GS+   L    ++  LDL  N +   IPK+
Sbjct: 412 LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIMS-IPKD 468

Query: 208 IGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNP 247
           + +L  +  L++ SN       G  + + SL+ + + +NP
Sbjct: 469 VTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 54.1 bits (130), Expect = 2e-08
 Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 6/88 (6%)

Query: 137 SKLVNLRRLALAGNQINGQIPASI-GGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDL 195
           S L  LR L L+ N+I   +   +      L   D+S N L     ++   +A L  LDL
Sbjct: 73  SFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQN---ISCCPMASLRHLDL 128

Query: 196 SYNNLQE-KIPKEIGNLHNVTFLDLRSN 222
           S+N+     + KE GNL  +TFL L + 
Sbjct: 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAA 156

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 49.5 bits (118), Expect = 4e-07
 Identities = 31/201 (15%), Positives = 61/201 (30%), Gaps = 30/201 (14%)

Query: 75  LQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPI 134
           +   I+     + + A     +E   N   + +          +   +L          +
Sbjct: 288 ITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV 347

Query: 135 EPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLS-----GSMLLTLGKL-- 187
            P    +   L    N     +      L +L    L RN L        M   +  L  
Sbjct: 348 CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLET 407

Query: 188 --------------------ARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGG 227
                                 +L L+LS N L   + + +     V  LDL +N  +  
Sbjct: 408 LDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNR-IMS 464

Query: 228 LVGSIEEMVSLKEMVVSNNPI 248
           +   +  + +L+E+ V++N +
Sbjct: 465 IPKDVTHLQALQELNVASNQL 485

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 49.5 bits (118), Expect = 4e-07
 Identities = 18/116 (15%), Positives = 42/116 (36%), Gaps = 1/116 (0%)

Query: 109 PTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLI 168
           P  ++YL N+ +L + E+    +     + L +L    +          A      ++ I
Sbjct: 275 PRPVEYL-NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNI 333

Query: 169 FDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNF 224
             LS ++     ++     +    L+ + N   + + +    L  +  L L+ N  
Sbjct: 334 KMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGL 389

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 65.5 bits (160), Expect = 2e-12
 Identities = 31/138 (22%), Positives = 48/138 (34%), Gaps = 8/138 (5%)

Query: 137 SKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLS 196
               NL+ L L  ++IN     +   L  L   DLS N+LS       G L+ L  L+L 
Sbjct: 47  RACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM 106

Query: 197 YNNLQE-KIPKEIGNLHNVTFLDLRSNNFLGGL-VGSIEEMVSLKEMVVSNNPIFG---- 250
            N  Q   +     NL N+  L + +      +       + SL E+ +    +      
Sbjct: 107 GNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ 166

Query: 251 --GGLNGIRWENLQNLEI 266
               +  I    L   E 
Sbjct: 167 SLKSIRDIHHLTLHLSES 184

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 65.5 bits (160), Expect = 3e-12
 Identities = 34/161 (21%), Positives = 65/161 (40%), Gaps = 11/161 (6%)

Query: 115 LKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIG-GLTKLLIFDLSR 173
              ++ L + +  L   L    S L  ++R+ +  +++   +P S    L  L   DLS 
Sbjct: 285 TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSE 343

Query: 174 NNLSGSMLLT---LGKLARLLKLDLSYNNLQ--EKIPKEIGNLHNVTFLDLRSNNFLGGL 228
           N +    L      G    L  L LS N+L+  +K  + +  L N+T LD+ S N    +
Sbjct: 344 NLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDI-SRNTFHPM 402

Query: 229 VGSIEEMVSLKEMVVSNNPI---FGGGLNGIRWENLQNLEI 266
             S +    ++ + +S+  I          +   ++ N  +
Sbjct: 403 PDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNL 443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 58.2 bits (141), Expect = 6e-10
 Identities = 26/191 (13%), Positives = 62/191 (32%), Gaps = 2/191 (1%)

Query: 80  EIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEP-SK 138
            + SS +  L++ L  L    NP     + +    L NLQ+L +       ++     + 
Sbjct: 88  SLSSSWFGPLSS-LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG 146

Query: 139 LVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYN 198
           L +L  L +    +      S+  +  +    L  +  +  + +    L+ +  L+L   
Sbjct: 147 LTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDT 206

Query: 199 NLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRW 258
           NL       +      + +   +         S  E++ L   ++  + +          
Sbjct: 207 NLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGL 266

Query: 259 ENLQNLEIWIF 269
            +    E  + 
Sbjct: 267 GDFNPSESDVV 277

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 56.3 bits (136), Expect = 2e-09
 Identities = 27/133 (20%), Positives = 52/133 (39%), Gaps = 11/133 (8%)

Query: 92  SLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQ 151
           +L SL+   N      +P S  + + ++ L L   G+     ++      L  L ++ N 
Sbjct: 388 NLTSLDISRNT--FHPMPDSCQWPEKMRFLNLSSTGIRV---VKTCIPQTLEVLDVSNNN 442

Query: 152 INGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNL 211
           ++      +  L +L    +SRN L    L        LL + +S N L+         L
Sbjct: 443 LD-SFSLFLPRLQEL---YISRNKLK--TLPDASLFPVLLVMKISRNQLKSVPDGIFDRL 496

Query: 212 HNVTFLDLRSNNF 224
            ++  + L +N +
Sbjct: 497 TSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.3 bits (118), Expect = 6e-07
 Identities = 23/185 (12%), Positives = 51/185 (27%), Gaps = 19/185 (10%)

Query: 100 SNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPAS 159
                   +    D L +++ L L +  L                +     + +     S
Sbjct: 180 HLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDES 239

Query: 160 IGGLTKLL------------------IFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQ 201
              L KLL                  + D + +       L   +   + +L +    L 
Sbjct: 240 FNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLF 299

Query: 202 EKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGL-NGIRWEN 260
             +      L  V  + + ++          + + SL+ + +S N +    L N      
Sbjct: 300 YDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGA 359

Query: 261 LQNLE 265
             +L+
Sbjct: 360 WPSLQ 364

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 30/180 (16%), Positives = 58/180 (32%), Gaps = 22/180 (12%)

Query: 73  PPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKL 132
                P++  SS  +KLA     L   S   L       + Y+  L  +   +  L G  
Sbjct: 212 QFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL----LKLLRYILELSEVEFDDCTLNGLG 267

Query: 133 PIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLK 192
              PS+   +  L                    +    + +  L   +      L ++ +
Sbjct: 268 DFNPSESDVVSELGKVE-------------TVTIRRLHIPQFYLFYDLSTVYSLLEKVKR 314

Query: 193 LDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLV----GSIEEMVSLKEMVVSNNPI 248
           + +  + +         +L ++ FLDL S N +               SL+ +V+S N +
Sbjct: 315 ITVENSKVFLVPCSFSQHLKSLEFLDL-SENLMVEEYLKNSACKGAWPSLQTLVLSQNHL 373

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 16/79 (20%), Positives = 34/79 (43%), Gaps = 3/79 (3%)

Query: 170 DLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLV 229
           D    + +    +  G  A +  LDLS+N +      ++    N+  L L+S+       
Sbjct: 11  DGRSRSFTS---IPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG 67

Query: 230 GSIEEMVSLKEMVVSNNPI 248
            +   + SL+ + +S+N +
Sbjct: 68  DAFYSLGSLEHLDLSDNHL 86

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 63.5 bits (155), Expect = 9e-12
 Identities = 31/157 (19%), Positives = 60/157 (38%), Gaps = 11/157 (7%)

Query: 92  SLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQ 151
           +++ L+   N   I  +   +     L  L L    LT            L  + L+ N+
Sbjct: 206 AVEELDASHNS--INVVRGPV--NVELTILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNE 259

Query: 152 INGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNL 211
           +   +      + +L    +S N L  ++ L    +  L  LDLS+N+L   + +     
Sbjct: 260 LEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQF 317

Query: 212 HNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPI 248
             +  L L  +N +  L   +    +LK + +S+N  
Sbjct: 318 DRLENLYL-DHNSIVTL--KLSTHHTLKNLTLSHNDW 351

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 60.4 bits (147), Expect = 8e-11
 Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 18/170 (10%)

Query: 80  EIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKL 139
            I    +Q   + L +L+  SN   +  +  S+  + +L    +    L+       +  
Sbjct: 155 RIEDDTFQATTS-LQNLQLSSNR--LTHVDLSL--IPSLFHANVSYNLLS-----TLAIP 204

Query: 140 VNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNN 199
           + +  L  + N IN  +   +    +L I  L  NNL+      L     L+++DLSYN 
Sbjct: 205 IAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNE 259

Query: 200 LQEKIPKEI-GNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPI 248
           L EKI       +  +  L + SNN L  L    + + +LK + +S+N +
Sbjct: 260 L-EKIMYHPFVKMQRLERLYI-SNNRLVALNLYGQPIPTLKVLDLSHNHL 307

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 60.4 bits (147), Expect = 1e-10
 Identities = 21/143 (14%), Positives = 51/143 (35%), Gaps = 2/143 (1%)

Query: 107 TIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKL 166
            I +++ Y      + +  +        E   L N + +    + +     A +    ++
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 71

Query: 167 LIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEI-GNLHNVTFLDLRSNNFL 225
            + +L+   +             + KL + +N ++  +P  +  N+  +T L L  N+  
Sbjct: 72  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTVLVLERNDLS 130

Query: 226 GGLVGSIEEMVSLKEMVVSNNPI 248
               G       L  + +SNN +
Sbjct: 131 SLPRGIFHNTPKLTTLSMSNNNL 153

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 54.7 bits (132), Expect = 7e-09
 Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 8/111 (7%)

Query: 92  SLDSLEFGSNPRLIGTIPTSI-DYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGN 150
            L  ++   N   +  I       ++ L+ L +    L   L +    +  L+ L L+ N
Sbjct: 249 GLVEVDLSYNE--LEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHN 305

Query: 151 QINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQ 201
            +   +  +     +L    L  N++     L L     L  L LS+N+  
Sbjct: 306 HLL-HVERNQPQFDRLENLYLDHNSIVT---LKLSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 42.3 bits (100), Expect = 9e-05
 Identities = 22/131 (16%), Positives = 44/131 (33%), Gaps = 9/131 (6%)

Query: 80  EIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKL 139
           +I    + K+   L+ L   +N   +  +      +  L+ L L    L   +     + 
Sbjct: 262 KIMYHPFVKMQR-LERLYISNN--RLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQF 317

Query: 140 VNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNN 199
             L  L L  N I   +   +     L    LS N+   + L  L     + +  +   +
Sbjct: 318 DRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDAD 372

Query: 200 LQEKIPKEIGN 210
              KI  ++ +
Sbjct: 373 QHCKIDYQLEH 383

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 63.6 bits (154), Expect = 1e-11
 Identities = 32/158 (20%), Positives = 67/158 (42%), Gaps = 9/158 (5%)

Query: 91  NSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGN 150
             L  LE  +   L+    T I  ++ L  L+  ++ L     ++    +    L    +
Sbjct: 372 KELQELEPENKWCLL----TIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 427

Query: 151 QINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGN 210
           +   +          + +  L+  +L+  +L  L +L  +  LDLS+N L+  +P  +  
Sbjct: 428 KFLLENSVLKMEYADVRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRA-LPPALAA 484

Query: 211 LHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPI 248
           L  +  L   S+N L  + G +  +  L+E+++ NN +
Sbjct: 485 LRCLEVLQA-SDNALENVDG-VANLPRLQELLLCNNRL 520

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 59.0 bits (142), Expect = 4e-10
 Identities = 25/116 (21%), Positives = 46/116 (39%), Gaps = 7/116 (6%)

Query: 107 TIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKL 166
           T+   ++ L  +  L L    L   LP   + L  L  L  + N +   +   +  L +L
Sbjct: 454 TVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRL 510

Query: 167 LIFDLSRNNLSG-SMLLTLGKLARLLKLDLSYNNLQEK---IPKEIGNLHNVTFLD 218
               L  N L   + +  L    RL+ L+L  N+L ++     +    L +V+ + 
Sbjct: 511 QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 62.3 bits (152), Expect = 1e-11
 Identities = 34/160 (21%), Positives = 62/160 (38%), Gaps = 8/160 (5%)

Query: 92  SLDSLEFGSNPRLIGTIPTSI-DYLKNLQSLVLLEKGLTGKLPIE-PSKLVNLRRLALAG 149
            L+ L+   N + + ++  +    L  L +L L   GL  +L       L  L+ L L  
Sbjct: 81  LLEQLDLSDNAQ-LRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQD 138

Query: 150 NQINGQIPASI-GGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEI 208
           N +   +P      L  L    L  N +S         L  L +L L  N +   +    
Sbjct: 139 NALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH-VHPHA 196

Query: 209 -GNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNP 247
             +L  +  L L +NN       ++  + +L+ + +++NP
Sbjct: 197 FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 56.2 bits (136), Expect = 2e-09
 Identities = 41/177 (23%), Positives = 65/177 (36%), Gaps = 20/177 (11%)

Query: 78  PIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSI-DYLKNLQSLVLLEKGLTGKLPIEP 136
           P+ IP++           +    N   I  +P +     +NL  L L    L     I+ 
Sbjct: 27  PVGIPAA--------SQRIFLHGN--RISHVPAASFRACRNLTILWLHSNVLAR---IDA 73

Query: 137 ---SKLVNLRRLALAGNQINGQIPASI-GGLTKLLIFDLSRNNLSGSMLLTLGKLARLLK 192
              + L  L +L L+ N     +  +   GL +L    L R  L          LA L  
Sbjct: 74  AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQY 133

Query: 193 LDLSYNNLQEKIPKEI-GNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPI 248
           L L  N LQ  +P +   +L N+T L L  N        +   + SL  +++  N +
Sbjct: 134 LYLQDNALQA-LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 32/126 (25%), Positives = 47/126 (37%), Gaps = 10/126 (7%)

Query: 80  EIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSI-DYLKNLQSLVLLEKGLTGKLPIEP-- 136
           E+    ++ LA  L  L    N   +  +P      L NL  L L    ++    +    
Sbjct: 119 ELGPGLFRGLAA-LQYLYLQDN--ALQALPDDTFRDLGNLTHLFLHGNRISS---VPERA 172

Query: 137 -SKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDL 195
              L +L RL L  N++    P +   L +L+   L  NNLS      L  L  L  L L
Sbjct: 173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRL 232

Query: 196 SYNNLQ 201
           + N   
Sbjct: 233 NDNPWV 238

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 63.0 bits (153), Expect = 2e-11
 Identities = 31/157 (19%), Positives = 60/157 (38%), Gaps = 11/157 (7%)

Query: 92  SLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQ 151
           +++ L+   N   I  +   +     L  L L    LT            L  + L+ N+
Sbjct: 212 AVEELDASHNS--INVVRGPV--NVELTILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNE 265

Query: 152 INGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNL 211
           +   +      + +L    +S N L  ++ L    +  L  LDLS+N+L   + +     
Sbjct: 266 LEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQF 323

Query: 212 HNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPI 248
             +  L L  +N +  L   +    +LK + +S+N  
Sbjct: 324 DRLENLYL-DHNSIVTL--KLSTHHTLKNLTLSHNDW 357

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 61.5 bits (149), Expect = 6e-11
 Identities = 35/157 (22%), Positives = 68/157 (43%), Gaps = 15/157 (9%)

Query: 92  SLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQ 151
           SL +L+  SN   +  +   +  + +L    +    L+       +  + +  L  + N 
Sbjct: 172 SLQNLQLSSNR--LTHVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNS 222

Query: 152 INGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNL 211
           IN  +   +    +L I  L  NNL+      L     L+++DLSYN L++ +      +
Sbjct: 223 IN-VVRGPV--NVELTILKLQHNNLT--DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKM 277

Query: 212 HNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPI 248
             +  L + SNN L  L    + + +LK + +S+N +
Sbjct: 278 QRLERLYI-SNNRLVALNLYGQPIPTLKVLDLSHNHL 313

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 59.2 bits (143), Expect = 4e-10
 Identities = 34/180 (18%), Positives = 73/180 (40%), Gaps = 29/180 (16%)

Query: 91  NSLDSLEFGSNPRLIGTIPTSI-DYLKNLQSLVLLEKGLTGKLPIEP---SKLVNLRRLA 146
           N+   + F ++   +  +P ++ D  + ++ L L +  +     I+    +    +++L 
Sbjct: 51  NNQKIVTFKNS--TMRKLPAALLDSFRQVELLNLNDLQIEE---IDTYAFAYAHTIQKLY 105

Query: 147 LAGNQINGQIPASI-GGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIP 205
           +  N I   +P  +   +  L +  L RN+LS           +L  L +S NNL E+I 
Sbjct: 106 MGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL-ERIE 163

Query: 206 KEI-GNLHNVTFLDLRSNNF-------LGGLV---------GSIEEMVSLKEMVVSNNPI 248
            +      ++  L L SN         +  L           ++   ++++E+  S+N I
Sbjct: 164 DDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSI 223

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 57.6 bits (139), Expect = 1e-09
 Identities = 21/145 (14%), Positives = 51/145 (35%), Gaps = 2/145 (1%)

Query: 105 IGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLT 164
              I +++ Y      + +  +        E   L N + +    + +     A +    
Sbjct: 16  YKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFR 75

Query: 165 KLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEI-GNLHNVTFLDLRSNN 223
           ++ + +L+   +             + KL + +N ++  +P  +  N+  +T L L  N+
Sbjct: 76  QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTVLVLERND 134

Query: 224 FLGGLVGSIEEMVSLKEMVVSNNPI 248
                 G       L  + +SNN +
Sbjct: 135 LSSLPRGIFHNTPKLTTLSMSNNNL 159

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 54.2 bits (130), Expect = 1e-08
 Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 8/111 (7%)

Query: 92  SLDSLEFGSNPRLIGTIPTSI-DYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGN 150
            L  ++   N   +  I       ++ L+ L +    L   L +    +  L+ L L+ N
Sbjct: 255 GLVEVDLSYNE--LEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHN 311

Query: 151 QINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQ 201
            +   +  +     +L    L  N++     L L     L  L LS+N+  
Sbjct: 312 HLL-HVERNQPQFDRLENLYLDHNSIVT---LKLSTHHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 22/131 (16%), Positives = 44/131 (33%), Gaps = 9/131 (6%)

Query: 80  EIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKL 139
           +I    + K+   L+ L   +N   +  +      +  L+ L L    L   +     + 
Sbjct: 268 KIMYHPFVKMQR-LERLYISNN--RLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQF 323

Query: 140 VNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNN 199
             L  L L  N I   +   +     L    LS N+   + L  L     + +  +   +
Sbjct: 324 DRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDAD 378

Query: 200 LQEKIPKEIGN 210
              KI  ++ +
Sbjct: 379 QHCKIDYQLEH 389

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 61.1 bits (149), Expect = 3e-11
 Identities = 53/174 (30%), Positives = 77/174 (44%), Gaps = 16/174 (9%)

Query: 81  IPSSNWQKLANSLDSLEFGSNPRLIGTIPTSI-DYLKNLQSLVLLEKGLTGKLPIE-PSK 138
           +PS  + +L   L  L    N   + T+P  I   LKNL++L + +  L   LPI    +
Sbjct: 52  LPSKAFHRLTK-LRLLYLNDNK--LQTLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQ 107

Query: 139 LVNLRRLALAGNQINGQIPASI-GGLTKLLIFDLSRNNLSGSMLLTLG---KLARLLKLD 194
           LVNL  L L  NQ+   +P  +   LTKL    L  N L     L  G   KL  L +L 
Sbjct: 108 LVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQS---LPKGVFDKLTSLKELR 163

Query: 195 LSYNNLQEKIPKEI-GNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNP 247
           L  N L+  +P+     L  +  L L +N       G+ + +  LK + +  NP
Sbjct: 164 LYNNQLKR-VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 48.1 bits (115), Expect = 9e-07
 Identities = 38/144 (26%), Positives = 64/144 (44%), Gaps = 6/144 (4%)

Query: 107 TIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASI-GGLTK 165
            IP++I    + + L L    L+        +L  LR L L  N++   +PA I   L  
Sbjct: 30  AIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKN 86

Query: 166 LLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEI-GNLHNVTFLDLRSNNF 224
           L    ++ N L    +    +L  L +L L  N L+  +P  +  +L  +T+L L  N  
Sbjct: 87  LETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNEL 145

Query: 225 LGGLVGSIEEMVSLKEMVVSNNPI 248
                G  +++ SLKE+ + NN +
Sbjct: 146 QSLPKGVFDKLTSLKELRLYNNQL 169

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 61.6 bits (150), Expect = 3e-11
 Identities = 38/159 (23%), Positives = 62/159 (38%), Gaps = 16/159 (10%)

Query: 109 PTSIDYLKNLQSLVLLEKGLTGKLPIEP-SKLVNLRRLALAGNQINGQIPASIGGLTKLL 167
             +   L  + +L     G+T    IE    L NL  L L  NQI    P  +  LTK+ 
Sbjct: 34  TVTQADLDGITTLSAFGTGVTT---IEGVQYLNNLIGLELKDNQITDLAP--LKNLTKIT 88

Query: 168 IFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGG 227
             +LS N L    +  +  L  +  LDL+   + +  P  +  L N+  L L  N     
Sbjct: 89  ELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITN- 143

Query: 228 LVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEI 266
            +  +  + +L+ + + N  +    L  +   NL  L  
Sbjct: 144 -ISPLAGLTNLQYLSIGNAQV--SDLTPL--ANLSKLTT 177

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 60.9 bits (148), Expect = 4e-11
 Identities = 35/157 (22%), Positives = 60/157 (38%), Gaps = 13/157 (8%)

Query: 92  SLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQ 151
           +L  LE   N   I  +   +  L  +  L L    L     I  + L +++ L L   Q
Sbjct: 64  NLIGLELKDNQ--ITDLA-PLKNLTKITELELSGNPLKNVSAI--AGLQSIKTLDLTSTQ 118

Query: 152 INGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNL 211
           I    P  + GL+ L +  L  N +  + +  L  L  L  L +    +   +   + NL
Sbjct: 119 ITDVTP--LAGLSNLQVLYLDLNQI--TNISPLAGLTNLQYLSIGNAQV-SDLT-PLANL 172

Query: 212 HNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPI 248
             +T L    N      +  +  + +L E+ + NN I
Sbjct: 173 SKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQI 207

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 18/99 (18%), Positives = 39/99 (39%), Gaps = 8/99 (8%)

Query: 150 NQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIG 209
             IN   P     L   +     ++N++    +T   L  +  L      +   I   + 
Sbjct: 7   TAINVIFP--DPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGV-TTIE-GVQ 60

Query: 210 NLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPI 248
            L+N+  L+L+ N      +  ++ +  + E+ +S NP+
Sbjct: 61  YLNNLIGLELKDNQITD--LAPLKNLTKITELELSGNPL 97

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 42.8 bits (101), Expect = 6e-05
 Identities = 24/133 (18%), Positives = 48/133 (36%), Gaps = 11/133 (8%)

Query: 92  SLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQ 151
           +L  L  G+    +  +   +  L  L +L   +  ++   P+  + L NL  + L  NQ
Sbjct: 152 NLQYLSIGNAQ--VSDLT-PLANLSKLTTLKADDNKISDISPL--ASLPNLIEVHLKNNQ 206

Query: 152 INGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKI-PKEIGN 210
           I+   P  +   + L I  L+   ++      +     L+  ++        I P  I +
Sbjct: 207 ISDVSP--LANTSNLFIVTLTNQTIT---NQPVFYNNNLVVPNVVKGPSGAPIAPATISD 261

Query: 211 LHNVTFLDLRSNN 223
                  +L  N 
Sbjct: 262 NGTYASPNLTWNL 274

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 61.9 bits (151), Expect = 3e-11
 Identities = 31/158 (19%), Positives = 53/158 (33%), Gaps = 21/158 (13%)

Query: 91  NSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGN 150
           + L  ++  +N   +  +P   D   +L+ +      L  +LP E   L  L  +    N
Sbjct: 153 SFLKIIDVDNNS--LKKLP---DLPPSLEFIAAGNNQLE-ELP-ELQNLPFLTAIYADNN 205

Query: 151 QINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGN 210
            +  ++P     L  +       N L    L  L  L  L  +    N L+  +P    +
Sbjct: 206 SLK-KLPDLPLSLESI---VAGNNILE--ELPELQNLPFLTTIYADNNLLKT-LPDLPPS 258

Query: 211 LHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPI 248
           L  +   D    +         E   SL  + VS N  
Sbjct: 259 LEALNVRDNYLTDL-------PELPQSLTFLDVSENIF 289

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 59.6 bits (145), Expect = 2e-10
 Identities = 31/134 (23%), Positives = 55/134 (41%), Gaps = 18/134 (13%)

Query: 115 LKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRN 174
            +    L L   GL+  LP  P    +L  L  + N +  ++P     L  LL+ + +  
Sbjct: 70  DRQAHELELNNLGLS-SLPELPP---HLESLVASCNSLT-ELPELPQSLKSLLVDNNNLK 124

Query: 175 NLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEE 234
            LS            L  L +S N L++ +P E+ N   +  +D+ +N+    L    + 
Sbjct: 125 ALSDL-------PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNS----LKKLPDL 171

Query: 235 MVSLKEMVVSNNPI 248
             SL+ +   NN +
Sbjct: 172 PPSLEFIAAGNNQL 185

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 58.5 bits (142), Expect = 5e-10
 Identities = 31/159 (19%), Positives = 55/159 (34%), Gaps = 28/159 (17%)

Query: 115 LKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRN 174
              LQ  +     LT ++P+E   + +      A ++     P   G   ++ +  L   
Sbjct: 10  NTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC 68

Query: 175 --------NLSGSMLLTL-GKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLR----- 220
                    L+   L +L      L  L  S N+L E +P+   +L ++   +       
Sbjct: 69  LDRQAHELELNNLGLSSLPELPPHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALS 127

Query: 221 -----------SNNFLGGLVGSIEEMVSLKEMVVSNNPI 248
                      SNN L  L   ++    LK + V NN +
Sbjct: 128 DLPPLLEYLGVSNNQLEKL-PELQNSSFLKIIDVDNNSL 165

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 39/170 (22%), Positives = 64/170 (37%), Gaps = 29/170 (17%)

Query: 92  SLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQ 151
           SL+S+  G+N          +  L  L ++      L   LP  P    +L  L +  N 
Sbjct: 216 SLESIVAGNNIL---EELPELQNLPFLTTIYADNNLLK-TLPDLPP---SLEALNVRDNY 268

Query: 152 INGQIPASIGGLTKLLIFDLSRN------------NLSGSMLLTL-GKLARLLKLDLSYN 198
           +   +P     LT L + +   +            N S + + +L      L +L++S N
Sbjct: 269 LT-DLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN 327

Query: 199 NLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPI 248
            L E +P     L     L   S N L  +    E   +LK++ V  NP+
Sbjct: 328 KLIE-LPALPPRLER---LIA-SFNHLAEV---PELPQNLKQLHVEYNPL 369

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 56.5 bits (137), Expect = 2e-09
 Identities = 28/157 (17%), Positives = 58/157 (36%), Gaps = 22/157 (14%)

Query: 92  SLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQ 151
           SL+ L   +N   +  +P        L+ L+     L  ++P  P    NL++L +  N 
Sbjct: 318 SLEELNVSNN--KLIELPALP---PRLERLIASFNHLA-EVPELPQ---NLKQLHVEYNP 368

Query: 152 INGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNL 211
           +  + P     +  L +     N+    +      L    +L +  N L+E  P    ++
Sbjct: 369 LR-EFPDIPESVEDLRM-----NSHLAEVPELPQNLK---QLHVETNPLRE-FPDIPESV 418

Query: 212 HNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPI 248
            +   L + S   +     + E    L++ V  ++  
Sbjct: 419 ED---LRMNSERVVDPYEFAHETTDKLEDDVFEHHHH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 40.0 bits (94), Expect = 5e-04
 Identities = 10/67 (14%), Positives = 20/67 (29%), Gaps = 1/67 (1%)

Query: 156 IPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVT 215
           I       T L       +NL+  M +    +    +   +++  +   P   G    + 
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 216 FLDLRSN 222
              LR  
Sbjct: 62  VSRLRDC 68

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 60.0 bits (146), Expect = 5e-11
 Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 4/113 (3%)

Query: 137 SKLVNLRRLALAGNQINGQIPASI-GGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDL 195
           S    LRR+ L+ NQI+ ++      GL  L    L  N ++         L  L  L L
Sbjct: 53  SPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111

Query: 196 SYNNLQEKIPKEI-GNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNP 247
           + N +   +  +   +LHN+  L L  N       G+   + +++ M ++ NP
Sbjct: 112 NANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 61.3 bits (148), Expect = 6e-11
 Identities = 35/158 (22%), Positives = 62/158 (39%), Gaps = 15/158 (9%)

Query: 92  SLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEP-SKLVNLRRLALAGN 150
           ++  L    N   +  I   +  LKNL  L L E  +     +     L  L+ L+L  N
Sbjct: 66  NVTKLFLNGN--KLTDI-KPLTNLKNLGWLFLDENKIKD---LSSLKDLKKLKSLSLEHN 119

Query: 151 QINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGN 210
            I+  I   +  L +L    L  N +  + +  L +L +L  L L  N +   I   +  
Sbjct: 120 GIS-DING-LVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQI-SDIV-PLAG 173

Query: 211 LHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPI 248
           L  +  L L S N +  L  ++  + +L  + + +   
Sbjct: 174 LTKLQNLYL-SKNHISDL-RALAGLKNLDVLELFSQEC 209

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 61.3 bits (148), Expect = 7e-11
 Identities = 27/155 (17%), Positives = 57/155 (36%), Gaps = 14/155 (9%)

Query: 112 IDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDL 171
            D         L +K +T  +    ++L ++ ++    + I   +   I  L  +    L
Sbjct: 17  DDAFAETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFL 72

Query: 172 SRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGS 231
           + N L+   +  L  L  L  L L  N +++     + +L  +  L L  N      +  
Sbjct: 73  NGNKLTD--IKPLTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNGI--SDING 126

Query: 232 IEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEI 266
           +  +  L+ + + NN I    +  +    L  L+ 
Sbjct: 127 LVHLPQLESLYLGNNKIT--DITVL--SRLTKLDT 157

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 54.3 bits (130), Expect = 1e-08
 Identities = 42/159 (26%), Positives = 61/159 (38%), Gaps = 13/159 (8%)

Query: 91  NSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEP-SKLVNLRRLALAG 149
             L SL    N   I  I   + +L  L+SL L    +T    I   S+L  L  L+L  
Sbjct: 109 KKLKSLSLEHNG--ISDI-NGLVHLPQLESLYLGNNKITD---ITVLSRLTKLDTLSLED 162

Query: 150 NQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIG 209
           NQI+  I   + GLTKL    LS+N++S   L  L  L  L  L+L       K      
Sbjct: 163 NQIS-DIV-PLAGLTKLQNLYLSKNHIS--DLRALAGLKNLDVLELFSQECLNKPINHQS 218

Query: 210 NLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPI 248
           NL     +     + +      I +    ++  V  +  
Sbjct: 219 NLVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVKWHLP 255

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 50.5 bits (120), Expect = 2e-07
 Identities = 16/107 (14%), Positives = 42/107 (39%), Gaps = 8/107 (7%)

Query: 142 LRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQ 201
           +         I    P       + +  +L + +++    +T  +L  + ++  + +++ 
Sbjct: 1   MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDI- 55

Query: 202 EKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPI 248
           + + + I  L NVT L L  N      +  +  + +L  + +  N I
Sbjct: 56  KSV-QGIQYLPNVTKLFLNGNKLTD--IKPLTNLKNLGWLFLDENKI 99

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 60.0 bits (146), Expect = 1e-10
 Identities = 38/184 (20%), Positives = 67/184 (36%), Gaps = 18/184 (9%)

Query: 92  SLDSLEFGSNPRLIGTIPTSI-DYLKNLQSLVLLEKGLTGKLPIEP---SKLVNLRRLAL 147
           +L  L    N   I  +  S+ + L  +  + L    L     IE      +  L  + +
Sbjct: 122 TLQELRVHENE--ITKVRKSVFNGLNQMIVVELGTNPLK-SSGIENGAFQGMKKLSYIRI 178

Query: 148 AGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKE 207
           A   I   IP   G    L    L  N ++     +L  L  L KL LS+N++       
Sbjct: 179 ADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS 235

Query: 208 IGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPI-------FGGGLNGIRWEN 260
           + N  ++  L L +NN L  + G + +   ++ + + NN I       F       +  +
Sbjct: 236 LANTPHLRELHL-NNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKAS 294

Query: 261 LQNL 264
              +
Sbjct: 295 YSGV 298

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 53.1 bits (128), Expect = 2e-08
 Identities = 33/197 (16%), Positives = 63/197 (31%), Gaps = 32/197 (16%)

Query: 80  EIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSI-DYLKNLQSLVL-------LEKGLTGK 131
           ++  S +  L   +  +E G+NP     I       +K L  + +       + +GL   
Sbjct: 135 KVRKSVFNGLNQ-MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPS 193

Query: 132 LP-----------IEP---SKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLS 177
           L            ++      L NL +L L+ N I+     S+     L    L+ N L 
Sbjct: 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253

Query: 178 GSMLLTLGKLARLLKLDLSYNNLQE------KIPKEIGNLHNVTFLDLRSNNFLGGLV-- 229
             +   L     +  + L  NN+          P       + + + L SN      +  
Sbjct: 254 -KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP 312

Query: 230 GSIEEMVSLKEMVVSNN 246
            +   +     + + N 
Sbjct: 313 STFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 52.3 bits (126), Expect = 4e-08
 Identities = 24/126 (19%), Positives = 46/126 (36%), Gaps = 3/126 (2%)

Query: 141 NLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNL 200
           +   L L  N+I          L  L    L  N +S         L +L +L LS N L
Sbjct: 53  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112

Query: 201 QEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWEN 260
           +E +P+++     +  L +  N            +  +  + +  NP+   G+    ++ 
Sbjct: 113 KE-LPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 169

Query: 261 LQNLEI 266
           ++ L  
Sbjct: 170 MKKLSY 175

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 49.6 bits (119), Expect = 3e-07
 Identities = 26/121 (21%), Positives = 53/121 (43%), Gaps = 13/121 (10%)

Query: 109 PTSIDYLKNLQSLVLLEKGLTGKLPIEP---SKLVNLRRLALAGNQINGQIPASI-GGLT 164
                 LKNL +L+L+   ++    I P   + LV L RL L+ NQ+  ++P  +   L 
Sbjct: 69  DGDFKNLKNLHTLILINNKISK---ISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQ 124

Query: 165 KLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQE-KIPKEI-GNLHNVTFLDLRSN 222
           +L    +  N ++         L +++ ++L  N L+   I       +  ++++ +   
Sbjct: 125 EL---RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT 181

Query: 223 N 223
           N
Sbjct: 182 N 182

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 59.8 bits (145), Expect = 2e-10
 Identities = 48/218 (22%), Positives = 83/218 (38%), Gaps = 11/218 (5%)

Query: 33  RTGLQGVSCDFFHGLWHVSAISIGPVYDNSLVCSQCKIFKPPLQSPIEIPSSNWQKLANS 92
              L    C        ++ + +     N    S  K F     +  +I S       N 
Sbjct: 197 EYWLGWEKCGNPFKNTSITTLDL---SGNGFKESMAKRF-FDAIAGTKIQSLILSNSYNM 252

Query: 93  LDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIE-PSKLVNLRRLALAGNQ 151
             S    +           ++    +++  L +  +   L     S   +L +L LA N+
Sbjct: 253 GSSFGHTNFKDPDNFTFKGLE-ASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNE 310

Query: 152 INGQIPASI-GGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEI-G 209
           IN +I  +   GLT LL  +LS+N L          L +L  LDLSYN+++  +  +   
Sbjct: 311 IN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA-LGDQSFL 368

Query: 210 NLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNP 247
            L N+  L L +N       G  + + SL+++ +  NP
Sbjct: 369 GLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 406

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 53.6 bits (129), Expect = 2e-08
 Identities = 33/183 (18%), Positives = 67/183 (36%), Gaps = 16/183 (8%)

Query: 80  EIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEP-SK 138
           E+  +++ +L + L  L+       +     +   L +L  L L       +L     + 
Sbjct: 44  ELNETSFSRLQD-LQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-QLETGAFNG 101

Query: 139 LVNLRRLALAGNQING-QIPASI-GGLTKLLIFDLSRNNLSGSMLLTL-GKLARLLKLDL 195
           L NL  L L    ++G  +  +    LT L +  L  NN+      +    + R   LDL
Sbjct: 102 LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDL 161

Query: 196 SYNNLQ----------EKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSN 245
           ++N ++          +     +  L ++T  D+          G+  +  S+  + +S 
Sbjct: 162 TFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSG 221

Query: 246 NPI 248
           N  
Sbjct: 222 NGF 224

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 51.7 bits (124), Expect = 8e-08
 Identities = 25/117 (21%), Positives = 44/117 (37%), Gaps = 5/117 (4%)

Query: 136 PSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGS-MLLTLGKLARLLKLD 194
           P    ++  + L+ N I      S   L  L    + +          T   L+ L+ L 
Sbjct: 26  PELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILK 85

Query: 195 LSYNNLQEKIPKEI-GNLHNVTFLDLRSNNFLGGLV--GSIEEMVSLKEMVVSNNPI 248
           L YN   + +       L N+  L L   N  G ++     + + SL+ +V+ +N I
Sbjct: 86  LDYNQFLQ-LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNI 141

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 51.7 bits (124), Expect = 9e-08
 Identities = 41/208 (19%), Positives = 74/208 (35%), Gaps = 17/208 (8%)

Query: 76  QSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSI-DYLKNLQSLVLLEKGLTG-KLP 133
              + I ++ ++ L++ L  L+   N      + T   + L NL+ L L +  L G  L 
Sbjct: 65  TPGLVIRNNTFRGLSS-LIILKLDYNQ--FLQLETGAFNGLANLEVLTLTQCNLDGAVLS 121

Query: 134 IEP-SKLVNLRRLALAGNQINGQIPASI-GGLTKLLIFDLSRNNLSGSMLLTLGKLA--R 189
                 L +L  L L  N I    PAS    + +  + DL+ N +       L       
Sbjct: 122 GNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKH 181

Query: 190 LLKLDLSYNNLQEKIPKEIG--------NLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEM 241
              L LS   LQ+     +G           ++T LDL  N F   +     + ++  ++
Sbjct: 182 FTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKI 241

Query: 242 VVSNNPIFGGGLNGIRWENLQNLEIWIF 269
                       +     N ++ + + F
Sbjct: 242 QSLILSNSYNMGSSFGHTNFKDPDNFTF 269

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 58.9 bits (143), Expect = 3e-10
 Identities = 35/184 (19%), Positives = 64/184 (34%), Gaps = 30/184 (16%)

Query: 91  NSLDSLEFGSNPRL---------IGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVN 141
           N++ +L+   N  L         +  +   +  L  L  L      LT    ++ S+   
Sbjct: 74  NNITTLDLSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLT---KLDVSQNPL 128

Query: 142 LRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQ 201
           L  L  A N +  +I   +   T+L   D   N       L +    +L  LD S+N + 
Sbjct: 129 LTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKIT--KLDVTPQTQLTTLDCSFNKIT 183

Query: 202 EKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENL 261
           E    ++     +  L+    N +  L   + + + L  +  S+N +       I    L
Sbjct: 184 E---LDVSQNKLLNRLNC-DTNNITKL--DLNQNIQLTFLDCSSNKL-----TEIDVTPL 232

Query: 262 QNLE 265
             L 
Sbjct: 233 TQLT 236

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 57.0 bits (138), Expect = 1e-09
 Identities = 28/133 (21%), Positives = 46/133 (34%), Gaps = 11/133 (8%)

Query: 116 KNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNN 175
            N  S V     +     I   +L  L  L    + I   +   I  LT L     + NN
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTG-IEKLTGLTKLICTSNN 75

Query: 176 LSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEM 235
           ++    L L +   L  L    N L   +   +  L  +T+L+    N L  L   + + 
Sbjct: 76  ITT---LDLSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNC-DTNKLTKL--DVSQN 126

Query: 236 VSLKEMVVSNNPI 248
             L  +  + N +
Sbjct: 127 PLLTYLNCARNTL 139

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 52.4 bits (126), Expect = 5e-08
 Identities = 24/167 (14%), Positives = 56/167 (33%), Gaps = 25/167 (14%)

Query: 91  NSLDSLEFGSNPRL---------IGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVN 141
           N +  L+   N  L         I  +   ++    L  L      LT    I+ + L  
Sbjct: 180 NKITELDVSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTE---IDVTPLTQ 234

Query: 142 LRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQ 201
           L     + N +  ++   +  L+KL      + +L     + L    +L+          
Sbjct: 235 LTYFDCSVNPLT-ELD--VSTLSKLTTLHCIQTDLLE---IDLTHNTQLIYFQAEGCRKI 288

Query: 202 EKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPI 248
           +++  ++ +   +  LD      +  L   + +   L  + ++N  +
Sbjct: 289 KEL--DVTHNTQLYLLDC-QAAGITEL--DLSQNPKLVYLYLNNTEL 330

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 48.9 bits (117), Expect = 7e-07
 Identities = 22/135 (16%), Positives = 46/135 (34%), Gaps = 17/135 (12%)

Query: 91  NSLDSLEFGSNPRLI--------GTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNL 142
             L  ++   N +LI              + +   L  L     G+T    ++ S+   L
Sbjct: 264 TDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGIT---ELDLSQNPKL 320

Query: 143 RRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQE 202
             L L   ++  ++   +   TKL        ++      ++GK+  L     +      
Sbjct: 321 VYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQD--FSSVGKIPALNNNFEAEGQTIT 375

Query: 203 KIPKEIGNLHNVTFL 217
            +PKE    +++T  
Sbjct: 376 -MPKETLTNNSLTIA 389

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 56.5 bits (137), Expect = 1e-09
 Identities = 39/150 (26%), Positives = 60/150 (40%), Gaps = 16/150 (10%)

Query: 78  PIEIPSSNWQKLANSLDSLEFGSNPRLIGTI-PTSIDYLKNLQSLVLLEKGLTGKLPIE- 135
           P  +P S          +L+   NP  +  +   S      LQ L L    +   +    
Sbjct: 23  PDNLPFS--------TKNLDLSFNP--LRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGA 71

Query: 136 PSKLVNLRRLALAGNQINGQIPASI-GGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLD 194
              L +L  L L GN I   +      GL+ L        NL+      +G L  L +L+
Sbjct: 72  YQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130

Query: 195 LSYNNLQE-KIPKEIGNLHNVTFLDLRSNN 223
           +++N +Q  K+P+   NL N+  LDL SN 
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 51.5 bits (124), Expect = 5e-08
 Identities = 32/140 (22%), Positives = 57/140 (40%), Gaps = 15/140 (10%)

Query: 92  SLDSLEFGSNPRLIGTIPTSI-DYLKNLQSLVLLEKGLTGKLPIEP--SKLVNLRRLALA 148
           SL  L        + ++      +LK L+ L +    +     +    S L NL  L L+
Sbjct: 101 SLQKLVAVETN--LASLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSNLTNLEHLDLS 157

Query: 149 GNQINGQIPASI-GGLTKLLIF----DLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEK 203
            N+I   I  +    L ++ +     DLS N ++        ++ RL +L L  N L+  
Sbjct: 158 SNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELALDTNQLKS- 214

Query: 204 IPKEI-GNLHNVTFLDLRSN 222
           +P  I   L ++  + L +N
Sbjct: 215 VPDGIFDRLTSLQKIWLHTN 234

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 55.9 bits (135), Expect = 2e-09
 Identities = 47/180 (26%), Positives = 67/180 (37%), Gaps = 22/180 (12%)

Query: 75  LQS-PIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLP 133
           L S P  IP+          + L+  S   L      +   L  L  L L    L   L 
Sbjct: 26  LDSVPSGIPADT--------EKLDLQST-GLATLSDATFRGLTKLTWLNLDYNQLQ-TLS 75

Query: 134 IE-PSKLVNLRRLALAGNQINGQIPASI-GGLTKLLIFDLSRNNLSGSMLLTLG---KLA 188
                 L  L  L LA NQ+   +P  +   LT+L    L  N L     L  G   +L 
Sbjct: 76  AGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKS---LPSGVFDRLT 131

Query: 189 RLLKLDLSYNNLQEKIPKEI-GNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNP 247
           +L +L L+ N LQ  IP      L N+  L L +N       G+ + +  L+ + +  N 
Sbjct: 132 KLKELRLNTNQLQS-IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 56.3 bits (136), Expect = 2e-09
 Identities = 33/186 (17%), Positives = 64/186 (34%), Gaps = 13/186 (6%)

Query: 92  SLDSLEFGSNPRLIGTIPTSI-DYLKNLQSLVLLEKGLTGKLPIE-PSKLVNLRRLALAG 149
           SL+ L+   N   +  + +S    L +L  L LL             S L  L+ L +  
Sbjct: 101 SLEHLDLSYN--YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGN 158

Query: 150 NQINGQIPASI-GGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEI 208
                +I      GLT L   ++  ++L      +L  +  +  L L        +   +
Sbjct: 159 MDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFV 218

Query: 209 GNLHNVTFLDLRSNNFLG--------GLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWEN 260
               +V  L+LR  +           G   S+ +  + + + +++  +F       +   
Sbjct: 219 DVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISG 278

Query: 261 LQNLEI 266
           L  LE 
Sbjct: 279 LLELEF 284

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 56.3 bits (136), Expect = 2e-09
 Identities = 36/188 (19%), Positives = 74/188 (39%), Gaps = 19/188 (10%)

Query: 92  SLDSLEFGSNPRLIGTIPTSI-DYLKNLQSLVLLEKGLTGKLPIEP---SKLVNLRRLAL 147
           ++ SL+  +N   I  I  S      NLQ+LVL   G+     IE    S L +L  L L
Sbjct: 53  AVKSLDLSNNR--ITYISNSDLQRCVNLQALVLTSNGINT---IEEDSFSSLGSLEHLDL 107

Query: 148 AGNQINGQIPASI-GGLTKLLIFDLSRNNLSG-SMLLTLGKLARLLKLDLSYNNLQEKIP 205
           + N +   + +S    L+ L   +L  N             L +L  L +   +   KI 
Sbjct: 108 SYNYL-SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ 166

Query: 206 KEI-GNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPI------FGGGLNGIRW 258
           ++    L  +  L++ +++       S++ + ++  +++           F    + +  
Sbjct: 167 RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVEC 226

Query: 259 ENLQNLEI 266
             L++ ++
Sbjct: 227 LELRDTDL 234

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 55.1 bits (133), Expect = 5e-09
 Identities = 28/155 (18%), Positives = 65/155 (41%), Gaps = 15/155 (9%)

Query: 80  EIPSSNWQKLANSLDSLEFGSNPRLIGTIPT-SIDYLKNLQSLVLLEKGLTGKLPIEPSK 138
           +I   ++  L   L+ LE  ++   + +    S+  ++N+  L+L  K     L I    
Sbjct: 164 KIQRKDFAGLTF-LEELEIDASD--LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDV 220

Query: 139 LVNLRRLALAGNQING----QIPA----SIGGLTKLLIFDLSRNNLSGSMLLTLGKLARL 190
             ++  L L    ++     ++      S+          ++  +L   ++  L +++ L
Sbjct: 221 TSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGL 279

Query: 191 LKLDLSYNNLQEKIPKEI-GNLHNVTFLDLRSNNF 224
           L+L+ S N L+  +P  I   L ++  + L +N +
Sbjct: 280 LELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 53.6 bits (129), Expect = 2e-08
 Identities = 26/168 (15%), Positives = 58/168 (34%), Gaps = 14/168 (8%)

Query: 92  SLDSLEFGSNPRLIGTIPTSI--DYLKNLQSLVLLEKGLTGKLPIE-PSKLVNLRRLALA 148
           SL  L    NP    T+  +    +L  LQ L +       K+  +  + L  L  L + 
Sbjct: 125 SLTFLNLLGNP--YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID 182

Query: 149 GNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEI 208
            + +    P S+  +  +    L        + + +   + +  L+L   +L      E+
Sbjct: 183 ASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSEL 242

Query: 209 --------GNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPI 248
                           + + ++  L  ++  + ++  L E+  S N +
Sbjct: 243 STGETNSLIKKFTFRNVKI-TDESLFQVMKLLNQISGLLELEFSRNQL 289

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 23/135 (17%), Positives = 41/135 (30%), Gaps = 21/135 (15%)

Query: 80  EIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSI-DYLKNLQSLVL------------LEK 126
                + + + N +  L           +     D   +++ L L            L  
Sbjct: 188 SYEPKSLKSIQN-VSHLILHMKQ--HILLLEIFVDVTSSVECLELRDTDLDTFHFSELST 244

Query: 127 GLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGK 186
           G T  L     K    R + +    +  Q+   +  ++ LL  + SRN L         +
Sbjct: 245 GETNSLI----KKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDR 299

Query: 187 LARLLKLDLSYNNLQ 201
           L  L K+ L  N   
Sbjct: 300 LTSLQKIWLHTNPWD 314

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 55.1 bits (133), Expect = 5e-09
 Identities = 33/158 (20%), Positives = 63/158 (39%), Gaps = 15/158 (9%)

Query: 92  SLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEP-SKLVNLRRLALAGN 150
           ++  L    N   +  I   +  LKNL  L L E  +     +     L  L+ L+L  N
Sbjct: 69  NVTKLFLNGN--KLTDI-KPLANLKNLGWLFLDENKVKD---LSSLKDLKKLKSLSLEHN 122

Query: 151 QINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGN 210
            I+  I   +  L +L    L  N +  + +  L +L +L  L L  N + + +P  +  
Sbjct: 123 GIS-DING-LVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISDIVP--LAG 176

Query: 211 LHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPI 248
           L  +  L L  N+     + ++  + +L  + + +   
Sbjct: 177 LTKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQEC 212

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 52.0 bits (125), Expect = 4e-08
 Identities = 27/155 (17%), Positives = 57/155 (36%), Gaps = 14/155 (9%)

Query: 112 IDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDL 171
            D         L +K +T  +    ++L ++ ++    + I   +   I  L  +    L
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFL 75

Query: 172 SRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGS 231
           + N L  + +  L  L  L  L L  N +++     + +L  +  L L  N      +  
Sbjct: 76  NGNKL--TDIKPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGI--SDING 129

Query: 232 IEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEI 266
           +  +  L+ + + NN I    +  +    L  L+ 
Sbjct: 130 LVHLPQLESLYLGNNKIT--DITVL--SRLTKLDT 160

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 48.9 bits (117), Expect = 4e-07
 Identities = 40/135 (29%), Positives = 55/135 (40%), Gaps = 11/135 (8%)

Query: 92  SLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEP-SKLVNLRRLALAGN 150
            L SL    N   I  I   + +L  L+SL L    +T    I   S+L  L  L+L  N
Sbjct: 113 KLKSLSLEHNG--ISDI-NGLVHLPQLESLYLGNNKITD---ITVLSRLTKLDTLSLEDN 166

Query: 151 QINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGN 210
           QI+  I   + GLTKL    LS+N++S   L  L  L  L  L+L       K      N
Sbjct: 167 QIS-DIV-PLAGLTKLQNLYLSKNHIS--DLRALAGLKNLDVLELFSQECLNKPINHQSN 222

Query: 211 LHNVTFLDLRSNNFL 225
           L     +     + +
Sbjct: 223 LVVPNTVKNTDGSLV 237

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 54.6 bits (132), Expect = 5e-09
 Identities = 32/140 (22%), Positives = 57/140 (40%), Gaps = 13/140 (9%)

Query: 110 TSIDYLKNLQSLVLLEKGLTGKLPIEP-SKLVNLRRLALAGNQINGQIPASIGGLTKLLI 168
            S   L  +Q+       +     +       NL+ L L+ NQI+  +   +  LTKL  
Sbjct: 35  VSQKELSGVQNFNGDNSNIQS---LAGMQFFTNLKELHLSHNQIS-DLSP-LKDLTKLEE 89

Query: 169 FDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGL 228
             ++RN L     L     A L +L L  N L++     + +L N+  L +R+N      
Sbjct: 90  LSVNRNRLKN---LNGIPSACLSRLFLDNNELRD--TDSLIHLKNLEILSIRNNKLKS-- 142

Query: 229 VGSIEEMVSLKEMVVSNNPI 248
           +  +  +  L+ + +  N I
Sbjct: 143 IVMLGFLSKLEVLDLHGNEI 162

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 33/140 (23%), Positives = 53/140 (37%), Gaps = 13/140 (9%)

Query: 84  SNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLR 143
           +  Q   N L  L    N   I  + + +  L  L+ L +    L     +       L 
Sbjct: 57  AGMQFFTN-LKELHLSHNQ--ISDL-SPLKDLTKLEELSVNRNRLKN---LNGIPSACLS 109

Query: 144 RLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEK 203
           RL L  N++  +   S+  L  L I  +  N L    ++ LG L++L  LDL  N +   
Sbjct: 110 RLFLDNNEL--RDTDSLIHLKNLEILSIRNNKL--KSIVMLGFLSKLEVLDLHGNEITNT 165

Query: 204 IPKEIGNLHNVTFLDLRSNN 223
               +  L  V ++DL    
Sbjct: 166 GG--LTRLKKVNWIDLTGQK 183

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 48.1 bits (115), Expect = 8e-07
 Identities = 26/139 (18%), Positives = 53/139 (38%), Gaps = 11/139 (7%)

Query: 110 TSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIF 169
                L N     L ++ +T  +  +  +L  ++      + I   +   +   T L   
Sbjct: 13  FPDPGLANAVKQNLGKQSVTDLVSQK--ELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKEL 68

Query: 170 DLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLV 229
            LS N +  S L  L  L +L +L ++ N L+            ++ L L +N       
Sbjct: 69  HLSHNQI--SDLSPLKDLTKLEELSVNRNRLKN---LNGIPSACLSRLFLDNNELRD--T 121

Query: 230 GSIEEMVSLKEMVVSNNPI 248
            S+  + +L+ + + NN +
Sbjct: 122 DSLIHLKNLEILSIRNNKL 140

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 24/120 (20%), Positives = 50/120 (41%), Gaps = 10/120 (8%)

Query: 147 LAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPK 206
                IN   P    GL   +  +L + +++   L++  +L+ +   +   +N+Q     
Sbjct: 4   QRPTPINQVFP--DPGLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQS--LA 57

Query: 207 EIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEI 266
            +    N+  L L  N      +  ++++  L+E+ V+ N +    LNGI    L  L +
Sbjct: 58  GMQFFTNLKELHLSHNQISD--LSPLKDLTKLEELSVNRNRL--KNLNGIPSACLSRLFL 113

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 53.5 bits (129), Expect = 8e-09
 Identities = 47/176 (26%), Positives = 64/176 (36%), Gaps = 46/176 (26%)

Query: 78  PIEIPSSNWQKL---ANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPI 134
           P  IP++  Q L    N +  LE           P   D L NL+ L L    L   LP+
Sbjct: 35  PAGIPTNA-QILYLHDNQITKLE-----------PGVFDSLINLKELYLGSNQLG-ALPV 81

Query: 135 E-PSKLVNLRRLALAGNQINGQIPASIGGLTKLL--IFDLSRNNLSGSMLLTLGKLARLL 191
                L  L  L L  NQ           LT L   +FD               +L  L 
Sbjct: 82  GVFDSLTQLTVLDLGTNQ-----------LTVLPSAVFD---------------RLVHLK 115

Query: 192 KLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNP 247
           +L +  N L E +P+ I  L ++T L L  N       G+ + + SL    +  NP
Sbjct: 116 ELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 53.1 bits (128), Expect = 1e-08
 Identities = 22/115 (19%), Positives = 43/115 (37%), Gaps = 10/115 (8%)

Query: 115 LKNLQSLVLLEKGLTGKLPIEP---SKLVNLRRLALAGNQINGQIPASI-GGLTKLLIFD 170
           L  L+ +      +T    IE         +  + L  N++   +   +  GL  L    
Sbjct: 56  LPQLRKINFSNNKITD---IEEGAFEGASGVNEILLTSNRLEN-VQHKMFKGLESLKTLM 111

Query: 171 LSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEI-GNLHNVTFLDLRSNNF 224
           L  N ++     +   L+ +  L L  N +   +       LH+++ L+L +N F
Sbjct: 112 LRSNRITCVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLANPF 165

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 53.6 bits (129), Expect = 1e-08
 Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 3/109 (2%)

Query: 140 VNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNN 199
            +   L L+ N +     A++   T+L   +L R  L  + L   G L  L  LDLS+N 
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL--TKLQVDGTLPVLGTLDLSHNQ 88

Query: 200 LQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPI 248
           LQ  +P     L  +T LD+  N      +G++  +  L+E+ +  N +
Sbjct: 89  LQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 42.8 bits (101), Expect = 5e-05
 Identities = 31/155 (20%), Positives = 48/155 (30%), Gaps = 51/155 (32%)

Query: 92  SLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVL-------LEKGLTGKLP----------- 133
            L +L+   N   + ++P     L  L  L +       L  G    L            
Sbjct: 78  VLGTLDLSHNQ--LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135

Query: 134 ---IEP---SKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKL 187
              + P   +    L +L+LA N +  ++PA         + +                L
Sbjct: 136 LKTLPPGLLTPTPKLEKLSLANNNLT-ELPAG--------LLN---------------GL 171

Query: 188 ARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSN 222
             L  L L  N+L   IPK     H + F  L  N
Sbjct: 172 ENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGN 205

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 53.6 bits (128), Expect = 2e-08
 Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 2/94 (2%)

Query: 156 IPASIGGLTKLLIFDLSRNNLSGSM-LLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNV 214
               + G   L    +        + L  L  L  L  L +  + L+   P        +
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82

Query: 215 TFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPI 248
           + L+L S N L  L     + +SL+E+V+S NP+
Sbjct: 83  SRLNL-SFNALESLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.0 bits (98), Expect = 1e-04
 Identities = 13/80 (16%), Positives = 26/80 (32%), Gaps = 4/80 (5%)

Query: 100 SNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEP-SKLVNLRRLALAGNQINGQIPA 158
           +    +      +   +NL  L +  +     L +     L  LR L +  + +   +  
Sbjct: 16  TRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAP 73

Query: 159 SI-GGLTKLLIFDLSRNNLS 177
                  +L   +LS N L 
Sbjct: 74  DAFHFTPRLSRLNLSFNALE 93

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 6/114 (5%)

Query: 137 SKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLS 196
           +  V  R L L G +I   I      L +    D S N +    L     L RL  L ++
Sbjct: 16  TNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR--KLDGFPLLRRLKTLLVN 72

Query: 197 YNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGL--VGSIEEMVSLKEMVVSNNPI 248
            N +          L ++T L L +NN L  L  +  +  + SL  + +  NP+
Sbjct: 73  NNRICRIGEGLDQALPDLTELIL-TNNSLVELGDLDPLASLKSLTYLCILRNPV 125

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 22/113 (19%), Positives = 37/113 (32%), Gaps = 8/113 (7%)

Query: 113 DYLKNLQSLVLLEKGLTGKLPIEP-SKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDL 171
             L    ++   +  +     ++    L  L+ L +  N+I          L  L    L
Sbjct: 39  ATLDQFDAIDFSDNEIR---KLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95

Query: 172 SRNNLSG-SMLLTLGKLARLLKLDLSYNNLQEKI---PKEIGNLHNVTFLDLR 220
           + N+L     L  L  L  L  L +  N +  K       I  +  V  LD +
Sbjct: 96  TNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ 148

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 51.2 bits (123), Expect = 2e-08
 Identities = 25/111 (22%), Positives = 51/111 (45%), Gaps = 6/111 (5%)

Query: 141 NLRRLALAGNQIN-GQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNN 199
           +++ L L  ++ N G++        +L         L+   +  L KL +L KL+LS N 
Sbjct: 18  DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT--SIANLPKLNKLKKLELSDNR 75

Query: 200 LQEKIPKEIGNLHNVTFLDLRSNNFLGGL--VGSIEEMVSLKEMVVSNNPI 248
           +   +        N+T L+L S N +  L  +  ++++ +LK + + N  +
Sbjct: 76  VSGGLEVLAEKCPNLTHLNL-SGNKIKDLSTIEPLKKLENLKSLDLFNCEV 125

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 32/136 (23%), Positives = 55/136 (40%), Gaps = 6/136 (4%)

Query: 87  QKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLA 146
            +  + +  L   ++    G +    D  + L+ L  +  GLT  +   P KL  L++L 
Sbjct: 13  NRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIANLP-KLNKLKKLE 70

Query: 147 LAGNQINGQIPASIGGLTKLLIFDLSRNNLSG-SMLLTLGKLARLLKLDLSYNNLQEKI- 204
           L+ N+++G +         L   +LS N +   S +  L KL  L  LDL    +     
Sbjct: 71  LSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130

Query: 205 --PKEIGNLHNVTFLD 218
                   L  +T+LD
Sbjct: 131 YRENVFKLLPQLTYLD 146

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 51.2 bits (123), Expect = 7e-08
 Identities = 20/146 (13%), Positives = 46/146 (31%), Gaps = 19/146 (13%)

Query: 91  NSLDSLEFGSNPRLIGTIPTSI-DYLKNLQSLVLLE-KGLTGKLPIEP---SKLVNLRRL 145
            ++  +    +   +  + +     L  +  + +   + LT    I+P    +L  L+ L
Sbjct: 55  PNISRIYVSIDVT-LQQLESHSFYNLSKVTHIEIRNTRNLTY---IDPDALKELPLLKFL 110

Query: 146 ALAGNQINGQIPA--SIGGLTKLLIFDLSRNN----LSGSMLLTLGKLARLLKLDLSYNN 199
            +    +    P    +       I +++ N     +  +    L      L L L  N 
Sbjct: 111 GIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE--TLTLKLYNNG 167

Query: 200 LQEKIPKEIGNLHNVTFLDLRSNNFL 225
               +     N   +  + L  N +L
Sbjct: 168 FTS-VQGYAFNGTKLDAVYLNKNKYL 192

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 45.4 bits (108), Expect = 6e-06
 Identities = 26/142 (18%), Positives = 45/142 (31%), Gaps = 14/142 (9%)

Query: 92  SLDSLEFGSNPRLIGTIPT-SIDYLKNLQSLVLLE-KGLTGKLPIEP---SKLVNLRRLA 146
           S  +L+       + TIP+ +   L N+  + +     L     +E      L  +  + 
Sbjct: 32  STQTLKLIETH--LRTIPSHAFSNLPNISRIYVSIDVTLQQ---LESHSFYNLSKVTHIE 86

Query: 147 LAGNQINGQIPASI-GGLTKLLIFDLSRNNLSG-SMLLTLGKLARLLKLDLSYNNLQEKI 204
           +   +    I       L  L    +    L     L  +        L+++ N     I
Sbjct: 87  IRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSI 146

Query: 205 PKEI-GNLHNVTF-LDLRSNNF 224
           P      L N T  L L +N F
Sbjct: 147 PVNAFQGLCNETLTLKLYNNGF 168

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 17/96 (17%), Positives = 40/96 (41%), Gaps = 5/96 (5%)

Query: 155 QIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEI-GNLHN 213
           +IP+       L    L   +L          L  + ++ +S +   +++      NL  
Sbjct: 25  RIPSLPPSTQTL---KLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSK 81

Query: 214 VTFLDLRSNNFLGGL-VGSIEEMVSLKEMVVSNNPI 248
           VT +++R+   L  +   +++E+  LK + + N  +
Sbjct: 82  VTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGL 117

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 39.2 bits (92), Expect = 7e-04
 Identities = 24/137 (17%), Positives = 44/137 (32%), Gaps = 12/137 (8%)

Query: 92  SLDSLEFGSNPRLIGTIP--TSIDYLKNLQSLVLLEKGLTGKLPIE-PSKLVN-LRRLAL 147
            L  L   +    +   P  T +        L + +      +P+     L N    L L
Sbjct: 106 LLKFLGIFNTG--LKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKL 163

Query: 148 AGNQINGQIPASIGGLTKLLIFDLSRNNLSGSM-LLTLGKLARLLK-LDLSYNNLQEKIP 205
             N     +       TKL    L++N     +     G +      LD+S  ++   +P
Sbjct: 164 YNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LP 221

Query: 206 KEIGNLHNVTFLDLRSN 222
            +   L ++  L  R+ 
Sbjct: 222 SKG--LEHLKELIARNT 236

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 49.0 bits (117), Expect = 2e-07
 Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 6/111 (5%)

Query: 141 NLRRLALAGNQIN-GQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNN 199
            +R L L   + N G+I         L    L    L    +  L KL +L KL+LS N 
Sbjct: 25  AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS--VSNLPKLPKLKKLELSENR 82

Query: 200 LQEKIPKEIGNLHNVTFLDLRSNNFLGGL--VGSIEEMVSLKEMVVSNNPI 248
           +   +      L N+T L+L S N L  +  +  ++++  LK + + N  +
Sbjct: 83  IFGGLDMLAEKLPNLTHLNL-SGNKLKDISTLEPLKKLECLKSLDLFNCEV 132

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 46.7 bits (111), Expect = 1e-06
 Identities = 36/137 (26%), Positives = 51/137 (37%), Gaps = 8/137 (5%)

Query: 91  NSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEP-SKLVNLRRLALAG 149
            ++  L   +     G I        NL+ L L+  GL     +    KL  L++L L+ 
Sbjct: 24  AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS---VSNLPKLPKLKKLELSE 80

Query: 150 NQINGQIPASIGGLTKLLIFDLSRNNLSG-SMLLTLGKLARLLKLDLSYNNLQEKI---P 205
           N+I G +      L  L   +LS N L   S L  L KL  L  LDL    +        
Sbjct: 81  NRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRE 140

Query: 206 KEIGNLHNVTFLDLRSN 222
                L  +T+LD    
Sbjct: 141 SVFKLLPQLTYLDGYDR 157

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 47.8 bits (114), Expect = 7e-07
 Identities = 35/166 (21%), Positives = 62/166 (37%), Gaps = 42/166 (25%)

Query: 90  ANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVL----LEKGLTGKLPIEP-SKLVNLRR 144
           A   + +E       I  +  ++  LK  + L L    +EK       I   S + NLR 
Sbjct: 22  ATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-------ISSLSGMENLRI 74

Query: 145 LALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKI 204
           L+L  N I       I  L  +                       L +L +SYN +   +
Sbjct: 75  LSLGRNLI-----KKIENLDAV--------------------ADTLEELWISYNQI-ASL 108

Query: 205 PKEIGNLHNVTFLDLRSNNFLGGL--VGSIEEMVSLKEMVVSNNPI 248
              I  L N+  L + SNN +     +  +  +  L++++++ NP+
Sbjct: 109 -SGIEKLVNLRVLYM-SNNKITNWGEIDKLAALDKLEDLLLAGNPL 152

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 48.3 bits (115), Expect = 9e-07
 Identities = 28/150 (18%), Positives = 55/150 (36%), Gaps = 14/150 (9%)

Query: 107 TIPTSIDYLKNLQSLVLLEKGLTGKLPIEP---SKLVNLRRLALAGNQINGQIPASI-GG 162
            IP+ +   +N   L  +   L     I+    S   +L ++ ++ N +   I A +   
Sbjct: 23  EIPSDL--PRNAIELRFVLTKLRV---IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSN 77

Query: 163 LTKLLIFDLSR-NNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEI-GNLHNVTFLDLR 220
           L KL    + + NNL          L  L  L +S   ++  +P     +      LD++
Sbjct: 78  LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH-LPDVHKIHSLQKVLLDIQ 136

Query: 221 SNNFLGGL-VGSIEEMVS-LKEMVVSNNPI 248
            N  +  +   S   +      + ++ N I
Sbjct: 137 DNINIHTIERNSFVGLSFESVILWLNKNGI 166

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 47.9 bits (114), Expect = 1e-06
 Identities = 27/137 (19%), Positives = 49/137 (35%), Gaps = 6/137 (4%)

Query: 92  SLDSLEFGSNPRLIGTIPTSI-DYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGN 150
            L  +        +  I       L NLQ L++   G+     +     +    L +  N
Sbjct: 80  KLHEIRI-EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN 138

Query: 151 QINGQIPA-SIGGLT-KLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEI 208
                I   S  GL+ + +I  L++N +            +L +L+LS NN  E++P ++
Sbjct: 139 INIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGT-QLDELNLSDNNNLEELPNDV 197

Query: 209 -GNLHNVTFLDLRSNNF 224
                    LD+     
Sbjct: 198 FHGASGPVILDISRTRI 214

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 46.5 bits (111), Expect = 3e-06
 Identities = 46/138 (33%), Positives = 64/138 (46%), Gaps = 15/138 (10%)

Query: 92  SLDSLEFGSNPRLIGTIPTSI-DYLKNLQSLVLLEKGLTGKLPIE-PSKLVNLRRLALAG 149
           +L  L    N   + ++P  + D L NL+ LVL+E  L   LP     KL NL  L LA 
Sbjct: 86  NLTYLILTGNQ--LQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAH 142

Query: 150 NQINGQIPASI-GGLTKLLIFDLSRNNLSGSMLLTLG---KLARLLKLDLSYNNLQEKIP 205
           NQ+   +P  +   LT L   DLS N L     L  G   KL +L  L L  N L+  +P
Sbjct: 143 NQLQ-SLPKGVFDKLTNLTELDLSYNQLQS---LPEGVFDKLTQLKDLRLYQNQLK-SVP 197

Query: 206 KEI-GNLHNVTFLDLRSN 222
             +   L ++ ++ L  N
Sbjct: 198 DGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 46.2 bits (110), Expect = 4e-06
 Identities = 45/137 (32%), Positives = 64/137 (46%), Gaps = 15/137 (10%)

Query: 91  NSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGN 150
           NS+D +   ++   I ++   I YL N++ L L    L   +     +L NL  L L GN
Sbjct: 41  NSIDQIIANNSD--IKSVQ-GIQYLPNVRYLALGGNKLH-DISAL-KELTNLTYLILTGN 95

Query: 151 QINGQIPASI-GGLTKLLIFDLSRNNLSGSMLLTLG---KLARLLKLDLSYNNLQEKIPK 206
           Q+   +P  +   LT L    L  N L     L  G   KL  L  L+L++N LQ  +PK
Sbjct: 96  QLQ-SLPNGVFDKLTNLKELVLVENQLQS---LPDGVFDKLTNLTYLNLAHNQLQ-SLPK 150

Query: 207 EI-GNLHNVTFLDLRSN 222
            +   L N+T LDL  N
Sbjct: 151 GVFDKLTNLTELDLSYN 167

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 45.4 bits (108), Expect = 5e-06
 Identities = 41/151 (27%), Positives = 61/151 (40%), Gaps = 21/151 (13%)

Query: 78  PIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIE-P 136
           P  IP+            L+  +N  L        D L +L  L L    L   LP    
Sbjct: 23  PTGIPAQT--------TYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVF 72

Query: 137 SKLVNLRRLALAGNQINGQIPASI-GGLTKLLIFDLSRNNLSGSMLLTLG---KLARLLK 192
           +KL +L  L L+ NQ+   +P  +   LT+L    L+ N L     L  G   KL +L  
Sbjct: 73  NKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQS---LPDGVFDKLTQLKD 128

Query: 193 LDLSYNNLQEKIPKEI-GNLHNVTFLDLRSN 222
           L L  N L+  +P  +   L ++ ++ L  N
Sbjct: 129 LRLYQNQLK-SVPDGVFDRLTSLQYIWLHDN 158

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 45.0 bits (107), Expect = 5e-06
 Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 9/84 (10%)

Query: 143 RRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLG---KLARLLKLDLSYNN 199
             L L GNQ    +P  +     L + DLS N +S    L+      + +LL L LSYN 
Sbjct: 34  TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIST---LSNQSFSNMTQLLTLILSYNR 89

Query: 200 LQEKIPKEI-GNLHNVTFLDLRSN 222
           L+  IP      L ++  L L  N
Sbjct: 90  LRC-IPPRTFDGLKSLRLLSLHGN 112

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 9/116 (7%)

Query: 108 IPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLL 167
           IP  +        L L     T  +P E S   +L  + L+ N+I+     S   +T+LL
Sbjct: 29  IPRDV------TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLL 81

Query: 168 IFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEI-GNLHNVTFLDLRSN 222
              LS N L      T   L  L  L L  N++   +P+    +L  ++ L + +N
Sbjct: 82  TLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISV-VPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 38.4 bits (90), Expect = 9e-04
 Identities = 24/108 (22%), Positives = 38/108 (35%), Gaps = 19/108 (17%)

Query: 75  LQS-PIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLP 133
           L+  P  IP             L    N      +P  +   K+L  + L    ++  L 
Sbjct: 22  LKVLPKGIPRDV--------TELYLDGNQ--FTLVPKELSNYKHLTLIDLSNNRIS-TLS 70

Query: 134 IEP---SKLVNLRRLALAGNQINGQIPASI-GGLTKLLIFDLSRNNLS 177
                 S +  L  L L+ N++   IP     GL  L +  L  N++S
Sbjct: 71  --NQSFSNMTQLLTLILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDIS 115

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.9 bits (105), Expect = 1e-05
 Identities = 24/130 (18%), Positives = 44/130 (33%), Gaps = 19/130 (14%)

Query: 115 LKNLQSLVLLEKGLTGKLP--IEPSKLVNLRRLALAGNQINGQIPASIGGLTKLL----- 167
             NL+SL ++  GL   +   I  S L NL +L L     +      +     L      
Sbjct: 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRF 251

Query: 168 ----IFDLSRNNLSG---SMLLTLGKLARLLKLDLSYNNLQ----EKIPKEIGNLHNVTF 216
                  +           M L    L +L  +D+S   L       +   +  + ++ F
Sbjct: 252 PNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKF 311

Query: 217 LDLRSNNFLG 226
           +++   N+L 
Sbjct: 312 INM-KYNYLS 320

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 9/110 (8%)

Query: 143 RRLALAGNQINGQIPASI-GGLTKLLIFDLSRNNLSGSMLLTLG---KLARLLKLDLSYN 198
             L L  N++       + G L  L+  +L RN L+G   +        + + +L L  N
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG---IEPNAFEGASHIQELQLGEN 88

Query: 199 NLQEKIPKEI-GNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNP 247
            ++E I  ++   LH +  L+L  N     + GS E + SL  + +++NP
Sbjct: 89  KIKE-ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 8/112 (7%)

Query: 140 VNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLG---KLARLLKLDLS 196
            +  RL L  N++          LT+L    LS+N +     L  G   KL +L  L L 
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS---LPDGVFDKLTKLTILYLH 84

Query: 197 YNNLQEKIPKEI-GNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNP 247
            N LQ  +P  +   L  +  L L +N       G  + + SL+++ +  NP
Sbjct: 85  ENKLQS-LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	269
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.96
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.94
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.93
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.93
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.93
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.93
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.93
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.93
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.93
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.93
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.93
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.92
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.92
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.92
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.92
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.92
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.92
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.92
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.91
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.91
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.91
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.91
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.9
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.9
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.9
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.9
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.9
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.9
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.9
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.9
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.89
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.89
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.89
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.89
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.89
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.89
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.89
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.89
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.88
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.88
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.88
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.88
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.88
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.88
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.88
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.88
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.88
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.87
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.87
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.87
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.87
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.87
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.87
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.86
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.86
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.86
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.86
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.86
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.86
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.85
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.85
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.85
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.85
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.84
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.84
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.84
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.83
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.83
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.83
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.83
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.82
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.82
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.82
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.82
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.82
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.82
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.81
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.81
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.8
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.8
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.8
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.8
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.79
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.79
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.79
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.78
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.78
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.78
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.78
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.78
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.78
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.77
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.76
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.75
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.75
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.74
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.74
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.74
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.73
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.72
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.71
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.71
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.7
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.7
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.68
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.66
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.65
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.64
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.63
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.61
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.6
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.58
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.58
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.52
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.48
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.44
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.43
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.42
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.42
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.39
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.38
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.37
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.36
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.35
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.94
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.88
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.79
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.76
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.71
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.55
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.46
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.43
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.4
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.39
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.37
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.33
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.27
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.81
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.29
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.23
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.96

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=3.9e-37  Score=264.44  Aligned_cols=255  Identities=25%  Similarity=0.308  Sum_probs=191.5

Q ss_pred             CHHHHHHHHHHHhcccC----CCCCCCCCCCCCCC--CCCCCceEeecCCCceEEEEEEeC--------CCCCCCccccc
Q 036300            2 ERKEKEALYSTIQGFVG----KWWNGSDLYPDPFG--RTGLQGVSCDFFHGLWHVSAISIG--------PVYDNSLVCSQ   67 (269)
Q Consensus         2 ~~~~~~~l~~~~~~~~~----~~W~~~~~~~~~C~--~~~~~gv~C~~~~~~~~v~~l~l~--------~~~~~~~~~~~   67 (269)
                      .++|++||++||+++.+    ++|..+   .+||.  |.   ||.|+......+|+.+++.        .+++....+..
T Consensus         4 ~~~~~~aL~~~k~~~~~~~~l~~W~~~---~~~C~~~w~---gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~   77 (313)
T 1ogq_A            4 NPQDKQALLQIKKDLGNPTTLSSWLPT---TDCCNRTWL---GVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPY   77 (313)
T ss_dssp             CHHHHHHHHHHHHHTTCCGGGTTCCTT---SCTTTTCST---TEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTT
T ss_pred             CHHHHHHHHHHHHhcCCcccccCCCCC---CCCCcCCCc---ceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCC
Confidence            47899999999999976    579765   38998  87   9999865411289999983        23333344455


Q ss_pred             ccccCCC--CCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEE
Q 036300           68 CKIFKPP--LQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRL  145 (269)
Q Consensus        68 l~~~~~~--~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  145 (269)
                      +..+...  .+..+.+|..+ .. +++|++|++++| .+.+.+|..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus        78 L~~L~L~~~n~l~~~~p~~l-~~-l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  154 (313)
T 1ogq_A           78 LNFLYIGGINNLVGPIPPAI-AK-LTQLHYLYITHT-NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI  154 (313)
T ss_dssp             CSEEEEEEETTEESCCCGGG-GG-CTTCSEEEEEEE-CCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred             CCeeeCCCCCcccccCChhH-hc-CCCCCEEECcCC-eeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeE
Confidence            5555554  34556777765 44 488999999988 7888888888889999999999999888888888888999999


Q ss_pred             EccCCcCCCCCccccCCCC-CCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCcc
Q 036300          146 ALAGNQINGQIPASIGGLT-KLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNF  224 (269)
Q Consensus       146 ~L~~n~l~~~~p~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l  224 (269)
                      ++++|.+++.+|..+..++ +|++|++++|.+++.+|..+..+. |+.|++++|++++..|..+..+++|++|++++|.+
T Consensus       155 ~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l  233 (313)
T 1ogq_A          155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL  233 (313)
T ss_dssp             ECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE
T ss_pred             ECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCce
Confidence            9999988888888888887 888888888888877777777766 77777777777776777777777777777777777


Q ss_pred             CCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300          225 LGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       225 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l  269 (269)
                      ++.+|. +..+++|++|++++|.+ .+.+|. .+..+++|++|++
T Consensus       234 ~~~~~~-~~~l~~L~~L~Ls~N~l-~~~~p~-~l~~l~~L~~L~L  275 (313)
T 1ogq_A          234 AFDLGK-VGLSKNLNGLDLRNNRI-YGTLPQ-GLTQLKFLHSLNV  275 (313)
T ss_dssp             CCBGGG-CCCCTTCCEEECCSSCC-EECCCG-GGGGCTTCCEEEC
T ss_pred             eeecCc-ccccCCCCEEECcCCcc-cCcCCh-HHhcCcCCCEEEC
Confidence            655544 56667777777777777 555654 5666777776654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1e-33  Score=264.88  Aligned_cols=221  Identities=17%  Similarity=0.261  Sum_probs=122.5

Q ss_pred             HHHHHHHHHHHhcccCCCCCCCC-------C---CCCCCCCCCCCceEeecCCCceEEEEEEeCCCCCCCcccccccccC
Q 036300            3 RKEKEALYSTIQGFVGKWWNGSD-------L---YPDPFGRTGLQGVSCDFFHGLWHVSAISIGPVYDNSLVCSQCKIFK   72 (269)
Q Consensus         3 ~~~~~~l~~~~~~~~~~~W~~~~-------~---~~~~C~~~~~~gv~C~~~~~~~~v~~l~l~~~~~~~~~~~~l~~~~   72 (269)
                      .+|++||.++|+++++..|....       .   ..++|.|..+.||+|+..+   +|++|++..               
T Consensus        29 ~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~~---~V~~L~L~~---------------   90 (636)
T 4eco_A           29 IKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNG---RVTGLSLEG---------------   90 (636)
T ss_dssp             HHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTTC---CEEEEECTT---------------
T ss_pred             HHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCCC---CEEEEEecC---------------
Confidence            35999999999999876555211       1   1488999333499998764   899999931               


Q ss_pred             CCCCCCcccCchhHHhhcCCccEEEccCCC--------------------------------------------------
Q 036300           73 PPLQSPIEIPSSNWQKLANSLDSLEFGSNP--------------------------------------------------  102 (269)
Q Consensus        73 ~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~--------------------------------------------------  102 (269)
                        .+..|.+|+.+ .. +++|++|+|++|.                                                  
T Consensus        91 --~~l~g~lp~~l-~~-L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~  166 (636)
T 4eco_A           91 --FGASGRVPDAI-GQ-LTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCI  166 (636)
T ss_dssp             --SCCEEEECGGG-GG-CTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHH
T ss_pred             --cccCCcCChHH-hc-CccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHh
Confidence              12334444433 22 2555555554441                                                  


Q ss_pred             ---------------------------CceeccCccccCCCCCCEEEcccCCCCCC-----------------CCCCCC-
Q 036300          103 ---------------------------RLIGTIPTSIDYLKNLQSLVLLEKGLTGK-----------------LPIEPS-  137 (269)
Q Consensus       103 ---------------------------~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-----------------~p~~~~-  137 (269)
                                                 .+.+ +|+.++++++|++|++++|.+++.                 +|..++ 
T Consensus       167 ~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~  245 (636)
T 4eco_A          167 NSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKW  245 (636)
T ss_dssp             HHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCG
T ss_pred             hcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhh
Confidence                                       1122 455555555555555555555543                 555555 


Q ss_pred             -CCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCc-CCc-hhhhhhcCc------ccCCEEeCcCCcCCCcCch--
Q 036300          138 -KLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNN-LSG-SMLLTLGKL------ARLLKLDLSYNNLQEKIPK--  206 (269)
Q Consensus       138 -~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~-l~~-~~~~~~~~l------~~L~~L~ls~n~l~~~~p~--  206 (269)
                       ++++|++|++++|.+.+.+|..+.++++|++|++++|+ +++ .+|..++.+      ++|++|++++|+++ .+|.  
T Consensus       246 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~  324 (636)
T 4eco_A          246 DNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVET  324 (636)
T ss_dssp             GGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHH
T ss_pred             cccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchh
Confidence             55555555555555555555555555555555555555 554 455544443      55555555555555 4444  


Q ss_pred             hhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCC
Q 036300          207 EIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPI  248 (269)
Q Consensus       207 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  248 (269)
                      .++.+++|++|++++|.++|.+| .+..+++|++|++++|.+
T Consensus       325 ~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l  365 (636)
T 4eco_A          325 SLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQI  365 (636)
T ss_dssp             HHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEE
T ss_pred             hhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCcc
Confidence            45555555555555555554444 444444444444444444

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=2.9e-33  Score=268.11  Aligned_cols=238  Identities=21%  Similarity=0.259  Sum_probs=157.6

Q ss_pred             HHHHHHHHHHHhcccCCCCCCCCC--CCCC--CCC------CCC---CceEeecCCCceEEEEEEeCCCCCCCccccccc
Q 036300            3 RKEKEALYSTIQGFVGKWWNGSDL--YPDP--FGR------TGL---QGVSCDFFHGLWHVSAISIGPVYDNSLVCSQCK   69 (269)
Q Consensus         3 ~~~~~~l~~~~~~~~~~~W~~~~~--~~~~--C~~------~~~---~gv~C~~~~~~~~v~~l~l~~~~~~~~~~~~l~   69 (269)
                      .+|++||++||+++.+.+|+.+.+  ..+|  |.|      ..|   .||.|+..+   +|++|+|.             
T Consensus       268 ~~d~~ALl~~k~~l~~~~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~---~V~~L~Ls-------------  331 (876)
T 4ecn_A          268 IKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNG---RVTGLSLA-------------  331 (876)
T ss_dssp             HHHHHHHHHHHHHTTGGGCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTS---CEEEEECT-------------
T ss_pred             hHHHHHHHHHHHHcCCCCCCcCCCcccccCCccccccccccccccCcCceEecCCC---CEEEEECc-------------
Confidence            469999999999999999987641  1245  999      112   499999744   89999993             


Q ss_pred             ccCCCCCCCcccCchhHHhhcCCccEEEc-cCCCCceec-----------------------------------------
Q 036300           70 IFKPPLQSPIEIPSSNWQKLANSLDSLEF-GSNPRLIGT-----------------------------------------  107 (269)
Q Consensus        70 ~~~~~~~~~~~lp~~~~~~l~~~L~~L~l-~~n~~l~~~-----------------------------------------  107 (269)
                          ..+..|.+|+.+ .+ +++|++|+| ++| .+.|.                                         
T Consensus       332 ----~~~L~G~ip~~l-~~-L~~L~~LdLss~N-~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~  404 (876)
T 4ecn_A          332 ----GFGAKGRVPDAI-GQ-LTELKVLSFGTHS-ETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLL  404 (876)
T ss_dssp             ----TTCCEEEECGGG-GG-CTTCCEEESCCTT-HHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHH
T ss_pred             ----cCCCCCcCchHH-hc-cccceEeeecccc-cccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHH
Confidence                123445666554 23 366666666 444 22222                                         


Q ss_pred             -----------------------------------cCccccCCCCCCEEEcccCCCCC-----------------CCCCC
Q 036300          108 -----------------------------------IPTSIDYLKNLQSLVLLEKGLTG-----------------KLPIE  135 (269)
Q Consensus       108 -----------------------------------~p~~l~~l~~L~~L~L~~n~l~~-----------------~~p~~  135 (269)
                                                         +|+.++++++|++|+|++|.+++                 .+|..
T Consensus       405 ~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~  484 (876)
T 4ecn_A          405 QDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEE  484 (876)
T ss_dssp             HHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC
T ss_pred             HHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChh
Confidence                                               56666677777777777777765                 26666


Q ss_pred             CC--CCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCc-CCc-hhhhhhcCcc-------cCCEEeCcCCcCCCcC
Q 036300          136 PS--KLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNN-LSG-SMLLTLGKLA-------RLLKLDLSYNNLQEKI  204 (269)
Q Consensus       136 ~~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~-l~~-~~~~~~~~l~-------~L~~L~ls~n~l~~~~  204 (269)
                      ++  ++++|++|+|++|.+.+.+|..+.++++|++|++++|+ +++ .+|..++.++       +|+.|++++|+++ .+
T Consensus       485 l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~i  563 (876)
T 4ecn_A          485 LSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EF  563 (876)
T ss_dssp             CCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BC
T ss_pred             hhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-cc
Confidence            66  67777777777777666677667777777777777776 666 5666555544       6777777777776 56


Q ss_pred             ch--hhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcC-CceecC
Q 036300          205 PK--EIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQN-LEIWIF  269 (269)
Q Consensus       205 p~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~-L~~L~l  269 (269)
                      |.  .++.+++|++|++++|.++ .+| .++.+++|+.|++++|.+ . .+|. .+.++++ |+.|++
T Consensus       564 p~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l-~-~lp~-~l~~l~~~L~~L~L  626 (876)
T 4ecn_A          564 PASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQI-E-EIPE-DFCAFTDQVEGLGF  626 (876)
T ss_dssp             CCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCC-S-CCCT-TSCEECTTCCEEEC
T ss_pred             CChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCcc-c-cchH-HHhhccccCCEEEC
Confidence            66  6667777777777777766 555 666666677777777766 2 5654 4556666 666654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=100.00  E-value=5e-33  Score=240.34  Aligned_cols=256  Identities=22%  Similarity=0.219  Sum_probs=216.1

Q ss_pred             HHHHHHHHHHHhccc-C-----CCCCC-CCCCCCCCCCCCCCceEeecC------CCceEEEEEEe-----CCCCCCCcc
Q 036300            3 RKEKEALYSTIQGFV-G-----KWWNG-SDLYPDPFGRTGLQGVSCDFF------HGLWHVSAISI-----GPVYDNSLV   64 (269)
Q Consensus         3 ~~~~~~l~~~~~~~~-~-----~~W~~-~~~~~~~C~~~~~~gv~C~~~------~~~~~v~~l~l-----~~~~~~~~~   64 (269)
                      ++|++||++||+++. +     ..|.. .....++|.|.   |+.|+..      ....+|+.+++     ..+++....
T Consensus        26 ~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~---g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~~lp~~l~~  102 (328)
T 4fcg_A           26 RPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRT---GRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFR  102 (328)
T ss_dssp             CCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSH---HHHHHHHHHHHHHHTSTTCCEEEEESSCCSSCCSCGGG
T ss_pred             chHHHHHHHHHHhccCCchhhhhhhcccccccccccccC---CcchhhhHHHHhcccccceeEEEccCCCchhcChhhhh
Confidence            468999999999884 2     34631 11125899998   9999531      00116778877     345666666


Q ss_pred             cccccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCC------
Q 036300           65 CSQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSK------  138 (269)
Q Consensus        65 ~~~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~------  138 (269)
                      +..+..+....+.+..+|..+ .. +++|++|++++| .+. .+|..+..+++|++|++++|.+.+.+|..+..      
T Consensus       103 l~~L~~L~L~~n~l~~lp~~~-~~-l~~L~~L~Ls~n-~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~  178 (328)
T 4fcg_A          103 LSHLQHMTIDAAGLMELPDTM-QQ-FAGLETLTLARN-PLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGE  178 (328)
T ss_dssp             GTTCSEEEEESSCCCCCCSCG-GG-GTTCSEEEEESC-CCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCC
T ss_pred             CCCCCEEECCCCCccchhHHH-hc-cCCCCEEECCCC-ccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhh
Confidence            777777777777777999876 44 499999999999 677 78999999999999999999998899988765      


Q ss_pred             ---CCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCC
Q 036300          139 ---LVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVT  215 (269)
Q Consensus       139 ---l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~  215 (269)
                         +++|++|++++|.++ .+|..+..+++|++|++++|.+++ +|..+..+++|++|++++|.+.+.+|..+..+++|+
T Consensus       179 ~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~  256 (328)
T 4fcg_A          179 HQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK  256 (328)
T ss_dssp             EEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCC
T ss_pred             hccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCC
Confidence               999999999999999 889999999999999999999994 666799999999999999999999999999999999


Q ss_pred             EEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300          216 FLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       216 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l  269 (269)
                      +|++++|.+.+.+|..+..+++|++|++++|.+ .+.+|. .+.++++|+.+++
T Consensus       257 ~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~-~~~iP~-~l~~L~~L~~l~l  308 (328)
T 4fcg_A          257 RLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN-LSRLPS-LIAQLPANCIILV  308 (328)
T ss_dssp             EEECTTCTTCCBCCTTGGGCTTCCEEECTTCTT-CCCCCG-GGGGSCTTCEEEC
T ss_pred             EEECCCCCchhhcchhhhcCCCCCEEeCCCCCc-hhhccH-HHhhccCceEEeC
Confidence            999999999999999999999999999999999 889996 8899999998864

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.3e-32  Score=262.37  Aligned_cols=246  Identities=24%  Similarity=0.286  Sum_probs=176.5

Q ss_pred             HHHHHHHHHHHhcccC----CCCCCCCCCCCCCCCCCCCceEeecCCCceEEEEEEeCCCC---------CCCccccccc
Q 036300            3 RKEKEALYSTIQGFVG----KWWNGSDLYPDPFGRTGLQGVSCDFFHGLWHVSAISIGPVY---------DNSLVCSQCK   69 (269)
Q Consensus         3 ~~~~~~l~~~~~~~~~----~~W~~~~~~~~~C~~~~~~gv~C~~~~~~~~v~~l~l~~~~---------~~~~~~~~l~   69 (269)
                      ++|++||++||+++.+    ++|..+   .|||.|.   ||+|+ . +  +|+.+++....         +.......+.
T Consensus        11 ~~~~~all~~k~~~~~~~~l~~W~~~---~~~C~w~---gv~C~-~-~--~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~   80 (768)
T 3rgz_A           11 YREIHQLISFKDVLPDKNLLPDWSSN---KNPCTFD---GVTCR-D-D--KVTSIDLSSKPLNVGFSAVSSSLLSLTGLE   80 (768)
T ss_dssp             HHHHHHHHHHHTTCSCTTSSTTCCTT---SCGGGST---TEEEE-T-T--EEEEEECTTSCCCEEHHHHHHHTTTCTTCC
T ss_pred             HHHHHHHHHHHhhCCCcccccCCCCC---CCCcCCc---ceEEC-C-C--cEEEEECCCCCcCCccCccChhHhccCccc
Confidence            6799999999999864    579755   3999998   99999 3 4  99999995321         1111122222


Q ss_pred             ccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCc--cccCCCCCCEEEcccCCCCCCCCCCC-CCCCCCCEEE
Q 036300           70 IFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPT--SIDYLKNLQSLVLLEKGLTGKLPIEP-SKLVNLRRLA  146 (269)
Q Consensus        70 ~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~  146 (269)
                      ......+....+|+.+ .. +++|++|+|++| .+.+.+|.  .++.+++|++|++++|.+.+..|..+ ..+++|++|+
T Consensus        81 ~l~~~~~~~~~l~~~~-~~-l~~L~~L~Ls~n-~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~  157 (768)
T 3rgz_A           81 SLFLSNSHINGSVSGF-KC-SASLTSLDLSRN-SLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLD  157 (768)
T ss_dssp             EEECTTSCEEECCCCC-CC-CTTCCEEECCSS-EEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEE
T ss_pred             ccCCcCCCcCCCchhh-cc-CCCCCEEECCCC-cCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEE
Confidence            2222223333344554 33 488999999999 78888887  88899999999999998888777765 7888888999


Q ss_pred             ccCCcCCCCCccc---cCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCc
Q 036300          147 LAGNQINGQIPAS---IGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNN  223 (269)
Q Consensus       147 L~~n~l~~~~p~~---l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~  223 (269)
                      +++|.+++..|..   +.++++|++|++++|.+++..+.  ..+++|++|++++|++.+.+|. ++.+++|++|++++|.
T Consensus       158 Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~  234 (768)
T 3rgz_A          158 LSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNK  234 (768)
T ss_dssp             CCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSC
T ss_pred             CCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCc
Confidence            9888888777665   67777888888888877755443  5677777777777777776665 7777777777777777


Q ss_pred             cCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceec
Q 036300          224 FLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWI  268 (269)
Q Consensus       224 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~  268 (269)
                      +++.+|..+..+++|++|++++|.+ .+.+|..   .+++|++|+
T Consensus       235 l~~~~~~~l~~l~~L~~L~Ls~n~l-~~~~~~~---~l~~L~~L~  275 (768)
T 3rgz_A          235 LSGDFSRAISTCTELKLLNISSNQF-VGPIPPL---PLKSLQYLS  275 (768)
T ss_dssp             CCSCHHHHTTTCSSCCEEECCSSCC-EESCCCC---CCTTCCEEE
T ss_pred             CCCcccHHHhcCCCCCEEECCCCcc-cCccCcc---ccCCCCEEE
Confidence            7777777777777777777777777 5444431   445555544

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.96  E-value=2.6e-28  Score=205.09  Aligned_cols=210  Identities=21%  Similarity=0.256  Sum_probs=129.5

Q ss_pred             CCCCCCCCCceEeecCCCceEEEEEEeCCCCCCCcccccccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceecc
Q 036300           29 DPFGRTGLQGVSCDFFHGLWHVSAISIGPVYDNSLVCSQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTI  108 (269)
Q Consensus        29 ~~C~~~~~~gv~C~~~~~~~~v~~l~l~~~~~~~~~~~~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~  108 (269)
                      +.|.|.   |+.|.+...   ++.+++.                  .+.+..+|..+    .+++++|++++| .+.+..
T Consensus         3 ~~C~~~---~~~C~c~~~---~~~l~~~------------------~~~l~~ip~~~----~~~l~~L~l~~n-~l~~~~   53 (270)
T 2o6q_A            3 ALCKKD---GGVCSCNNN---KNSVDCS------------------SKKLTAIPSNI----PADTKKLDLQSN-KLSSLP   53 (270)
T ss_dssp             CCBGGG---TCSBEEETT---TTEEECT------------------TSCCSSCCSCC----CTTCSEEECCSS-CCSCCC
T ss_pred             ccCCCC---CCCCEeCCC---CCEEEcc------------------CCCCCccCCCC----CCCCCEEECcCC-CCCeeC
Confidence            889997   899876542   2334431                  12223344432    345667777666 555544


Q ss_pred             CccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcc
Q 036300          109 PTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLA  188 (269)
Q Consensus       109 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~  188 (269)
                      +..|..+++|++|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..|..++
T Consensus        54 ~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  133 (270)
T 2o6q_A           54 SKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT  133 (270)
T ss_dssp             TTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             HHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCc
Confidence            45666667777777777766644444456666777777777766644444556666677777777766655555566666


Q ss_pred             cCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceec
Q 036300          189 RLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWI  268 (269)
Q Consensus       189 ~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~  268 (269)
                      +|++|++++|++++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+  ..+|...+..+++|+.|+
T Consensus       134 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l--~~~~~~~~~~l~~L~~L~  211 (270)
T 2o6q_A          134 KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL--KRVPEGAFDSLEKLKMLQ  211 (270)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCC--SCCCTTTTTTCTTCCEEE
T ss_pred             CCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcC--CcCCHHHhccccCCCEEE
Confidence            777777777766654444466666677777777766655555566666677777777766  345544566666666665


Q ss_pred             C
Q 036300          269 F  269 (269)
Q Consensus       269 l  269 (269)
                      +
T Consensus       212 l  212 (270)
T 2o6q_A          212 L  212 (270)
T ss_dssp             C
T ss_pred             e
Confidence            3

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.96  E-value=1.3e-27  Score=202.18  Aligned_cols=200  Identities=20%  Similarity=0.150  Sum_probs=175.9

Q ss_pred             ccccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCC-CCCCCCCCCCCCCCCCE
Q 036300           66 SQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKG-LTGKLPIEPSKLVNLRR  144 (269)
Q Consensus        66 ~~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~  144 (269)
                      .++..+....+.+..+|...|..+ ++|++|++++| .+.+..|..+..+++|++|++++|. +....|..+..+++|++
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~-~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~  109 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRAC-RNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT  109 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTC-TTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred             CCceEEEeeCCcCCccCHHHcccC-CCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence            355666666677888888777766 89999999999 7888878899999999999999997 77666888999999999


Q ss_pred             EEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCcc
Q 036300          145 LALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNF  224 (269)
Q Consensus       145 L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l  224 (269)
                      |++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+
T Consensus       110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  189 (285)
T 1ozn_A          110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV  189 (285)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             EECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcc
Confidence            99999999977788899999999999999999977777789999999999999999976666789999999999999999


Q ss_pred             CCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300          225 LGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       225 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l  269 (269)
                      ++..|..+..+++|++|++++|.+  ..++...+..+++|++|++
T Consensus       190 ~~~~~~~~~~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l  232 (285)
T 1ozn_A          190 AHVHPHAFRDLGRLMTLYLFANNL--SALPTEALAPLRALQYLRL  232 (285)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCC--SCCCHHHHTTCTTCCEEEC
T ss_pred             cccCHhHccCcccccEeeCCCCcC--CcCCHHHcccCcccCEEec
Confidence            988899999999999999999999  4566557889999999875

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.95  E-value=2.7e-27  Score=225.82  Aligned_cols=201  Identities=29%  Similarity=0.413  Sum_probs=154.8

Q ss_pred             ccccccccCCCCC-CCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCC
Q 036300           64 VCSQCKIFKPPLQ-SPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNL  142 (269)
Q Consensus        64 ~~~~l~~~~~~~~-~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L  142 (269)
                      .+.++..+....+ ..+.+|..+. . +++|++|++++| .+.+.+|..+..+++|++|++++|++++.+|..++.+++|
T Consensus       440 ~l~~L~~L~L~~n~l~~~~p~~~~-~-l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L  516 (768)
T 3rgz_A          440 SLSKLRDLKLWLNMLEGEIPQELM-Y-VKTLETLILDFN-DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL  516 (768)
T ss_dssp             GCTTCCEEECCSSCCCSCCCGGGG-G-CTTCCEEECCSS-CCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred             cCCCCCEEECCCCcccCcCCHHHc-C-CCCceEEEecCC-cccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCC
Confidence            3444444444443 3346666542 3 477888888888 6777778788888888888888888887888888888888


Q ss_pred             CEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhc-------------------------------------
Q 036300          143 RRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLG-------------------------------------  185 (269)
Q Consensus       143 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~-------------------------------------  185 (269)
                      ++|++++|.+++.+|..+..+++|++|++++|.+++.+|..+.                                     
T Consensus       517 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  596 (768)
T 3rgz_A          517 AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF  596 (768)
T ss_dssp             CEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEEC
T ss_pred             CEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccccc
Confidence            8888888888877888888888888888888877766654332                                     


Q ss_pred             ---------------------------------CcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhh
Q 036300          186 ---------------------------------KLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSI  232 (269)
Q Consensus       186 ---------------------------------~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~  232 (269)
                                                       .+++|+.|++++|+++|.+|..++.+++|+.|+|++|.++|.+|..+
T Consensus       597 ~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l  676 (768)
T 3rgz_A          597 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV  676 (768)
T ss_dssp             TTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred             ccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHH
Confidence                                             24567888888888888888888888888888888888888888888


Q ss_pred             hcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300          233 EEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       233 ~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l  269 (269)
                      +.+++|++|++++|++ ++.+|. .+.++++|++|++
T Consensus       677 ~~L~~L~~LdLs~N~l-~g~ip~-~l~~l~~L~~L~l  711 (768)
T 3rgz_A          677 GDLRGLNILDLSSNKL-DGRIPQ-AMSALTMLTEIDL  711 (768)
T ss_dssp             GGCTTCCEEECCSSCC-EECCCG-GGGGCCCCSEEEC
T ss_pred             hCCCCCCEEECCCCcc-cCcCCh-HHhCCCCCCEEEC
Confidence            8888888888888888 778886 7888888888875

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=2.1e-27  Score=202.81  Aligned_cols=232  Identities=18%  Similarity=0.157  Sum_probs=176.1

Q ss_pred             CCCCCCCCCceEeecCCC-------ceEEEEEEeC-----CCCCCC-cccccccccCCCCCCCccc---CchhHHhhcCC
Q 036300           29 DPFGRTGLQGVSCDFFHG-------LWHVSAISIG-----PVYDNS-LVCSQCKIFKPPLQSPIEI---PSSNWQKLANS   92 (269)
Q Consensus        29 ~~C~~~~~~gv~C~~~~~-------~~~v~~l~l~-----~~~~~~-~~~~~l~~~~~~~~~~~~l---p~~~~~~l~~~   92 (269)
                      ..|.|.   +|.|...+-       ..+++.+++.     .++... ..+.+++.+....+.+..+   |..++ . +++
T Consensus         5 C~C~~~---~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-~-~~~   79 (306)
T 2z66_A            5 CSCSGT---EIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDF-G-TTS   79 (306)
T ss_dssp             CEEETT---EEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHH-S-CSC
T ss_pred             CeeCCC---EEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccc-c-ccc
Confidence            346776   999975320       0134555552     233322 2444555555554544433   44433 2 377


Q ss_pred             ccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCC-CCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEc
Q 036300           93 LDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLP-IEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDL  171 (269)
Q Consensus        93 L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l  171 (269)
                      |++|++++| .+. .+|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        80 L~~L~Ls~n-~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  157 (306)
T 2z66_A           80 LKYLDLSFN-GVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM  157 (306)
T ss_dssp             CCEEECCSC-SEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEEC
T ss_pred             cCEEECCCC-ccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEEC
Confidence            888888888 554 466678889999999999999886544 57889999999999999998778888899999999999


Q ss_pred             cCCcCCc-hhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCC
Q 036300          172 SRNNLSG-SMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFG  250 (269)
Q Consensus       172 ~~n~l~~-~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  250 (269)
                      ++|.+++ ..|..+..+++|++|++++|++++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+ .
T Consensus       158 ~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~  236 (306)
T 2z66_A          158 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI-M  236 (306)
T ss_dssp             TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCC-C
T ss_pred             CCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCC-c
Confidence            9999986 5788888999999999999999987788899999999999999999987777889999999999999999 5


Q ss_pred             CCCCccccccCc-CCceecC
Q 036300          251 GGLNGIRWENLQ-NLEIWIF  269 (269)
Q Consensus       251 ~~~p~~~~~~l~-~L~~L~l  269 (269)
                      +..|. .+..++ +|++|++
T Consensus       237 ~~~~~-~~~~~~~~L~~L~L  255 (306)
T 2z66_A          237 TSKKQ-ELQHFPSSLAFLNL  255 (306)
T ss_dssp             BCSSS-SCCCCCTTCCEEEC
T ss_pred             ccCHH-HHHhhhccCCEEEc
Confidence            55554 677774 8998875

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=6.2e-27  Score=202.16  Aligned_cols=194  Identities=19%  Similarity=0.253  Sum_probs=174.6

Q ss_pred             cccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEE
Q 036300           67 QCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLA  146 (269)
Q Consensus        67 ~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  146 (269)
                      .+..+....+.+..+|..++.  +++|++|++++| .+. .+|..++.+++|++|++++|.++ .+|..+..+++|++|+
T Consensus        82 ~l~~L~L~~n~l~~lp~~l~~--l~~L~~L~L~~n-~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           82 GRVALELRSVPLPQFPDQAFR--LSHLQHMTIDAA-GLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS  156 (328)
T ss_dssp             TCCEEEEESSCCSSCCSCGGG--GTTCSEEEEESS-CCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred             ceeEEEccCCCchhcChhhhh--CCCCCEEECCCC-Ccc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence            344455555677799998755  499999999999 677 89999999999999999999999 8899999999999999


Q ss_pred             ccCCcCCCCCccccCC---------CCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEE
Q 036300          147 LAGNQINGQIPASIGG---------LTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFL  217 (269)
Q Consensus       147 L~~n~l~~~~p~~l~~---------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L  217 (269)
                      +++|.+.+.+|..+..         +++|++|++++|.++ .+|..+..+++|++|++++|++++ +|..+..+++|++|
T Consensus       157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L  234 (328)
T 4fcg_A          157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEEL  234 (328)
T ss_dssp             EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEE
T ss_pred             CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEE
Confidence            9999988899987654         999999999999999 788889999999999999999996 67779999999999


Q ss_pred             EccCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300          218 DLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       218 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l  269 (269)
                      ++++|.+.+.+|..+..+++|++|++++|.+ .+.+|. .+.++++|++|++
T Consensus       235 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~-~~~~p~-~~~~l~~L~~L~L  284 (328)
T 4fcg_A          235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSN-LLTLPL-DIHRLTQLEKLDL  284 (328)
T ss_dssp             ECTTCTTCCBCCCCTTCCCCCCEEECTTCTT-CCBCCT-TGGGCTTCCEEEC
T ss_pred             ECcCCcchhhhHHHhcCCCCCCEEECCCCCc-hhhcch-hhhcCCCCCEEeC
Confidence            9999999999999999999999999999998 788886 6899999999986

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.94  E-value=1.2e-27  Score=205.30  Aligned_cols=204  Identities=26%  Similarity=0.377  Sum_probs=179.1

Q ss_pred             CCCCCcccccccccCCCCCCC-cccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCC
Q 036300           58 VYDNSLVCSQCKIFKPPLQSP-IEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEP  136 (269)
Q Consensus        58 ~~~~~~~~~~l~~~~~~~~~~-~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~  136 (269)
                      ++.....+.++..+....+.+ +.+|..+ .. +++|++|++++| .+.+.+|..+..+++|++|++++|.+++.+|..+
T Consensus        93 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-~~-l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l  169 (313)
T 1ogq_A           93 IPPAIAKLTQLHYLYITHTNVSGAIPDFL-SQ-IKTLVTLDFSYN-ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY  169 (313)
T ss_dssp             CCGGGGGCTTCSEEEEEEECCEEECCGGG-GG-CTTCCEEECCSS-EEESCCCGGGGGCTTCCEEECCSSCCEEECCGGG
T ss_pred             CChhHhcCCCCCEEECcCCeeCCcCCHHH-hC-CCCCCEEeCCCC-ccCCcCChHHhcCCCCCeEECcCCcccCcCCHHH
Confidence            344444555666665554544 4778765 44 499999999999 7988999999999999999999999999999999


Q ss_pred             CCCC-CCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCC
Q 036300          137 SKLV-NLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVT  215 (269)
Q Consensus       137 ~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~  215 (269)
                      ..++ +|++|++++|.+++.+|..+..++ |++|++++|.+++..|..+..+++|+.|++++|++++..|. +..+++|+
T Consensus       170 ~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~  247 (313)
T 1ogq_A          170 GSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLN  247 (313)
T ss_dssp             GCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCC
T ss_pred             hhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCC
Confidence            9998 999999999999989999999887 99999999999999999999999999999999999976665 88899999


Q ss_pred             EEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300          216 FLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       216 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l  269 (269)
                      +|++++|.+++.+|..+..+++|++|++++|++ .+.+|.  ...+++|+.|++
T Consensus       248 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~~ip~--~~~l~~L~~l~l  298 (313)
T 1ogq_A          248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL-CGEIPQ--GGNLQRFDVSAY  298 (313)
T ss_dssp             EEECCSSCCEECCCGGGGGCTTCCEEECCSSEE-EEECCC--STTGGGSCGGGT
T ss_pred             EEECcCCcccCcCChHHhcCcCCCEEECcCCcc-cccCCC--CccccccChHHh
Confidence            999999999999999999999999999999999 778886  378899988865

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.94  E-value=3.6e-26  Score=189.92  Aligned_cols=169  Identities=22%  Similarity=0.201  Sum_probs=151.0

Q ss_pred             CcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCc
Q 036300           78 PIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIP  157 (269)
Q Consensus        78 ~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p  157 (269)
                      +.++|..+    .+.++.|++++| .+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+
T Consensus        26 l~~~p~~~----~~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  100 (251)
T 3m19_A           26 LDSVPSGI----PADTEKLDLQST-GLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPL  100 (251)
T ss_dssp             CSSCCSCC----CTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred             ccccCCCC----CCCCCEEEccCC-CcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccCh
Confidence            34556544    478999999999 7888888889999999999999999998888889999999999999999996666


Q ss_pred             cccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCC
Q 036300          158 ASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVS  237 (269)
Q Consensus       158 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  237 (269)
                      ..|..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|++|+|++|++++..+..+..+++
T Consensus       101 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  180 (251)
T 3m19_A          101 GVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGK  180 (251)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred             hHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCC
Confidence            78899999999999999999777777889999999999999999766668999999999999999999888889999999


Q ss_pred             CCeEEccCCCCCCCC
Q 036300          238 LKEMVVSNNPIFGGG  252 (269)
Q Consensus       238 L~~L~l~~N~l~~~~  252 (269)
                      |++|++++|++ ...
T Consensus       181 L~~L~l~~N~~-~c~  194 (251)
T 3m19_A          181 LQTITLFGNQF-DCS  194 (251)
T ss_dssp             CCEEECCSCCB-CTT
T ss_pred             CCEEEeeCCce-eCC
Confidence            99999999999 444

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.94  E-value=4e-26  Score=198.76  Aligned_cols=198  Identities=18%  Similarity=0.166  Sum_probs=107.4

Q ss_pred             cccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCC--CCCCCCCCCE
Q 036300           67 QCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPI--EPSKLVNLRR  144 (269)
Q Consensus        67 ~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~  144 (269)
                      ++..+....+.+..++...|..+ ++|++|++++| .+.+..+..+..+++|++|++++|.+++ +|.  .+..+++|++
T Consensus        77 ~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~~  153 (353)
T 2z80_A           77 NLQALVLTSNGINTIEEDSFSSL-GSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQI  153 (353)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTC-TTCCEEECCSS-CCSSCCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCTTCCE
T ss_pred             CCCEEECCCCccCccCHhhcCCC-CCCCEEECCCC-cCCcCCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCCCCcE
Confidence            33333333344444443333333 44555555554 3433222224445555555555555442 222  3444555555


Q ss_pred             EEccCCc-CCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCc
Q 036300          145 LALAGNQ-INGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNN  223 (269)
Q Consensus       145 L~L~~n~-l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~  223 (269)
                      |++++|. ++...+..+..+++|++|++++|.+++..|..+..+++|++|++++|++....+..+..+++|++|++++|.
T Consensus       154 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~  233 (353)
T 2z80_A          154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTD  233 (353)
T ss_dssp             EEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCB
T ss_pred             EECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCc
Confidence            5555542 332233444555555555555555554445555555555555555555543212223345667777777776


Q ss_pred             cCCc-------------------------------chhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300          224 FLGG-------------------------------LVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       224 l~~~-------------------------------~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l  269 (269)
                      +++.                               +|..+..+++|++|++++|.+  ..+|...+..+++|++|++
T Consensus       234 l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l--~~i~~~~~~~l~~L~~L~L  308 (353)
T 2z80_A          234 LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQL--KSVPDGIFDRLTSLQKIWL  308 (353)
T ss_dssp             CTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCC--CCCCTTTTTTCTTCCEEEC
T ss_pred             cccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCC--CccCHHHHhcCCCCCEEEe
Confidence            6652                               455677888999999999999  4788766788999998875

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=2.5e-25  Score=199.96  Aligned_cols=196  Identities=21%  Similarity=0.211  Sum_probs=126.7

Q ss_pred             ccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEc
Q 036300           68 CKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLAL  147 (269)
Q Consensus        68 l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  147 (269)
                      +..+....+.+..++...|..+ ++|++|+|++| .+.+..+..|..+++|++|+|++|.+++..+..+..+++|++|++
T Consensus        77 l~~L~L~~n~i~~~~~~~~~~l-~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A           77 TRYLNLMENNIQMIQADTFRHL-HHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             CSEEECCSSCCCEECTTTTTTC-TTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred             ccEEECcCCcCceECHHHcCCC-CCCCEEECCCC-ccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence            3334444444455544444444 55666666666 455555555555666666666666655444444555555666665


Q ss_pred             cCCcCCCCCcc-------------------------ccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCC
Q 036300          148 AGNQINGQIPA-------------------------SIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQE  202 (269)
Q Consensus       148 ~~n~l~~~~p~-------------------------~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~  202 (269)
                      ++|.++...+.                         .|..+++|++|++++|.+++ +| .+..+++|+.|++++|++++
T Consensus       155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~  232 (452)
T 3zyi_A          155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPE  232 (452)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSE
T ss_pred             CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcc
Confidence            55555522222                         35556666666666666653 23 35566777778888888877


Q ss_pred             cCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300          203 KIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       203 ~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l  269 (269)
                      ..|..+..+++|++|++++|.+++..+..|..+++|++|++++|.+  ..+|...+..+++|+.|+|
T Consensus       233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l--~~~~~~~~~~l~~L~~L~L  297 (452)
T 3zyi_A          233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL--SSLPHDLFTPLRYLVELHL  297 (452)
T ss_dssp             ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC--SCCCTTSSTTCTTCCEEEC
T ss_pred             cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcC--CccChHHhccccCCCEEEc
Confidence            7777888888888888888888877778888888888888888888  4566557778888888765

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.93  E-value=7.1e-26  Score=203.21  Aligned_cols=129  Identities=23%  Similarity=0.305  Sum_probs=81.2

Q ss_pred             EEEEEEeCC-----C-CCCCcccccccccCCCCCCC-cccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEE
Q 036300           49 HVSAISIGP-----V-YDNSLVCSQCKIFKPPLQSP-IEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSL  121 (269)
Q Consensus        49 ~v~~l~l~~-----~-~~~~~~~~~l~~~~~~~~~~-~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L  121 (269)
                      +++.+++..     + +.....+.+++.+....+.. +.+|...|.++ ++|++|++++| .+.+..|..|..+++|++|
T Consensus        31 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l-~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L  108 (455)
T 3v47_A           31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGL-SSLIILKLDYN-QFLQLETGAFNGLANLEVL  108 (455)
T ss_dssp             TCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTC-TTCCEEECTTC-TTCEECTTTTTTCTTCCEE
T ss_pred             ccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECccccccc-ccCCEEeCCCC-ccCccChhhccCcccCCEE
Confidence            456666631     1 22233455555555554433 47776666665 78888888888 6777777777777788888


Q ss_pred             EcccCCCCCCCCCC--CCCCCCCCEEEccCCcCCCCCccc-cCCCCCCCEEEccCCcCCch
Q 036300          122 VLLEKGLTGKLPIE--PSKLVNLRRLALAGNQINGQIPAS-IGGLTKLLIFDLSRNNLSGS  179 (269)
Q Consensus       122 ~L~~n~l~~~~p~~--~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~l~~n~l~~~  179 (269)
                      ++++|.+++..+..  +..+++|++|++++|.+++..|.. +..+++|++|++++|.+++.
T Consensus       109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~  169 (455)
T 3v47_A          109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI  169 (455)
T ss_dssp             ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred             eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence            88877777543333  666777777777777776555544 55666666666666655443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.93  E-value=1.2e-25  Score=189.21  Aligned_cols=198  Identities=19%  Similarity=0.215  Sum_probs=150.8

Q ss_pred             cccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEE
Q 036300           67 QCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLA  146 (269)
Q Consensus        67 ~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  146 (269)
                      +++.+....+.+..+|...|..+ ++|++|++++| .+.+..+..+..+++|++|++++|.+++..+..+.++++|++|+
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l-~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSF-PELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  106 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTC-TTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             CccEEECCCCcccccCHhHhccc-cCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence            45555556666777777666665 88888888888 67776666788888888888888888877777888888888888


Q ss_pred             ccCCcCCCCCccccCCCCCCCEEEccCCcCCch-hhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCC----EEEccC
Q 036300          147 LAGNQINGQIPASIGGLTKLLIFDLSRNNLSGS-MLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVT----FLDLRS  221 (269)
Q Consensus       147 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~----~L~L~~  221 (269)
                      +++|.+++..+..+..+++|++|++++|.+++. +|..+..+++|++|++++|++++..+..+..+++|+    .|++++
T Consensus       107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~  186 (276)
T 2z62_A          107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL  186 (276)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred             CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence            888888865555788888888888888888753 577888888888888888888876666666555555    788888


Q ss_pred             CccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300          222 NNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       222 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l  269 (269)
                      |.+++..+..+. ..+|++|++++|.+  ..+|...+..+++|+.|++
T Consensus       187 n~l~~~~~~~~~-~~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~l  231 (276)
T 2z62_A          187 NPMNFIQPGAFK-EIRLKELALDTNQL--KSVPDGIFDRLTSLQKIWL  231 (276)
T ss_dssp             SCCCEECTTSSC-SCCEEEEECCSSCC--SCCCTTTTTTCCSCCEEEC
T ss_pred             CcccccCccccC-CCcccEEECCCCce--eecCHhHhcccccccEEEc
Confidence            888755444444 34788888888888  4566556778888888764

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.93  E-value=3.3e-25  Score=187.30  Aligned_cols=185  Identities=22%  Similarity=0.190  Sum_probs=164.2

Q ss_pred             CcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCc-CCCCC
Q 036300           78 PIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQ-INGQI  156 (269)
Q Consensus        78 ~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~  156 (269)
                      +..+|..+    .++|++|++++| .+.+..+..|..+++|++|++++|.+++..|..+..+++|++|++++|. ++...
T Consensus        23 l~~ip~~~----~~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~   97 (285)
T 1ozn_A           23 LQAVPVGI----PAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD   97 (285)
T ss_dssp             CSSCCTTC----CTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCC
T ss_pred             cccCCcCC----CCCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccC
Confidence            34556543    478999999999 7888777789999999999999999998889999999999999999997 77555


Q ss_pred             ccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCC
Q 036300          157 PASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMV  236 (269)
Q Consensus       157 p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  236 (269)
                      |..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..++
T Consensus        98 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  177 (285)
T 1ozn_A           98 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH  177 (285)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             HHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCcc
Confidence            88899999999999999999988788899999999999999999977667789999999999999999977777899999


Q ss_pred             CCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300          237 SLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       237 ~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l  269 (269)
                      +|++|++++|.+ .+..| ..+..+++|+.|++
T Consensus       178 ~L~~L~l~~n~l-~~~~~-~~~~~l~~L~~L~l  208 (285)
T 1ozn_A          178 SLDRLLLHQNRV-AHVHP-HAFRDLGRLMTLYL  208 (285)
T ss_dssp             TCCEEECCSSCC-CEECT-TTTTTCTTCCEEEC
T ss_pred             ccCEEECCCCcc-cccCH-hHccCcccccEeeC
Confidence            999999999999 44445 47889999999975

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.93  E-value=4.2e-25  Score=197.83  Aligned_cols=196  Identities=23%  Similarity=0.248  Sum_probs=122.0

Q ss_pred             ccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEc
Q 036300           68 CKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLAL  147 (269)
Q Consensus        68 l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  147 (269)
                      +..+....+.+..++...|.++ ++|++|+|++| .+....+..|..+++|++|++++|.++...+..|..+++|++|++
T Consensus        90 L~~L~Ls~n~i~~i~~~~~~~l-~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l  167 (440)
T 3zyj_A           90 LEILQLSRNHIRTIEIGAFNGL-ANLNTLELFDN-RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDL  167 (440)
T ss_dssp             CCEEECCSSCCCEECGGGGTTC-SSCCEEECCSS-CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCEEECCCCcCCccChhhccCC-ccCCEEECCCC-cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCC
Confidence            3333333344444444444443 45555555555 344333334555555555555555555433344555555555555


Q ss_pred             cCCcCCCCCc-cccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCC
Q 036300          148 AGNQINGQIP-ASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLG  226 (269)
Q Consensus       148 ~~n~l~~~~p-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~  226 (269)
                      ++|...+.++ ..|..+++|++|++++|.++ .+| .+..+++|+.|++++|++++..|..|..+++|+.|++++|.+++
T Consensus       168 ~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~  245 (440)
T 3zyj_A          168 GELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV  245 (440)
T ss_dssp             CCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred             CCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeE
Confidence            5533222222 24566667777777777666 334 35667778888888888877777778888888888888888887


Q ss_pred             cchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300          227 GLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       227 ~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l  269 (269)
                      ..+..|..+++|++|++++|++  ..+|...+..+++|+.|+|
T Consensus       246 ~~~~~~~~l~~L~~L~L~~N~l--~~~~~~~~~~l~~L~~L~L  286 (440)
T 3zyj_A          246 IERNAFDNLQSLVEINLAHNNL--TLLPHDLFTPLHHLERIHL  286 (440)
T ss_dssp             ECTTSSTTCTTCCEEECTTSCC--CCCCTTTTSSCTTCCEEEC
T ss_pred             EChhhhcCCCCCCEEECCCCCC--CccChhHhccccCCCEEEc
Confidence            7777888888888888888888  4566567788888888765

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.93  E-value=2.8e-25  Score=195.87  Aligned_cols=132  Identities=20%  Similarity=0.192  Sum_probs=80.1

Q ss_pred             cccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEE
Q 036300           67 QCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLA  146 (269)
Q Consensus        67 ~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  146 (269)
                      +++.+....+.++.+|..+|..+ ++|++|++++| .+.+..+..|..+++|++|++++|.+++..|..+.++++|++|+
T Consensus        46 ~l~~l~l~~~~l~~l~~~~~~~l-~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  123 (390)
T 3o6n_A           46 NQKIVTFKNSTMRKLPAALLDSF-RQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  123 (390)
T ss_dssp             CCSEEEEESCEESEECTHHHHHC-CCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CceEEEecCCchhhCChhHhccc-ccCcEEECCCC-cccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence            33333334455566666666555 66677777666 56555555666666666666666666655555566666666666


Q ss_pred             ccCCcCCCCCcc-ccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCC
Q 036300          147 LAGNQINGQIPA-SIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQ  201 (269)
Q Consensus       147 L~~n~l~~~~p~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~  201 (269)
                      +++|.++ .+|. .|..+++|++|++++|.+++..+..+..+++|++|++++|+++
T Consensus       124 L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  178 (390)
T 3o6n_A          124 LERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT  178 (390)
T ss_dssp             CCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred             CCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC
Confidence            6666666 3333 3456666666666666666555555666666666666666554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=2.9e-25  Score=206.17  Aligned_cols=197  Identities=19%  Similarity=0.147  Sum_probs=118.2

Q ss_pred             cccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEE
Q 036300           67 QCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLA  146 (269)
Q Consensus        67 ~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  146 (269)
                      ++..+....+.++.+|..+|..+ ++|++|++++| .+.+..|..|..+++|++|+|++|.+++..|..|+++++|++|+
T Consensus        52 ~l~~l~l~~~~l~~lp~~~~~~l-~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           52 NQKIVTFKNSTMRKLPAALLDSF-RQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             CCSEEEESSCEESEECTHHHHHC-CCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CceEEEeeCCCCCCcCHHHHccC-CCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence            33333334455666777666665 67777777777 56665555667777777777777777665555666677777777


Q ss_pred             ccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcC----------------------
Q 036300          147 LAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKI----------------------  204 (269)
Q Consensus       147 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~----------------------  204 (269)
                      +++|.+++..+..|..+++|++|++++|.+++..|..|..+++|++|++++|.+++..                      
T Consensus       130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~  209 (597)
T 3oja_B          130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI  209 (597)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEEC
T ss_pred             eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccC
Confidence            7777766333334566667777777777666665656666666666666666555321                      


Q ss_pred             -------------------------------------chhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCC
Q 036300          205 -------------------------------------PKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNP  247 (269)
Q Consensus       205 -------------------------------------p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  247 (269)
                                                           +..+..+++|+.|+|++|.+++..|..+..+++|++|++++|.
T Consensus       210 ~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~  289 (597)
T 3oja_B          210 PIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR  289 (597)
T ss_dssp             CTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC
T ss_pred             CchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC
Confidence                                                 1224445556666666666665556666666666666666665


Q ss_pred             CCCCCCCccccccCcCCceec
Q 036300          248 IFGGGLNGIRWENLQNLEIWI  268 (269)
Q Consensus       248 l~~~~~p~~~~~~l~~L~~L~  268 (269)
                      +  ..+|. .+..+++|+.|+
T Consensus       290 l--~~l~~-~~~~l~~L~~L~  307 (597)
T 3oja_B          290 L--VALNL-YGQPIPTLKVLD  307 (597)
T ss_dssp             C--CEEEC-SSSCCTTCCEEE
T ss_pred             C--CCCCc-ccccCCCCcEEE
Confidence            5  23433 334455555554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.93  E-value=6.8e-25  Score=189.39  Aligned_cols=196  Identities=18%  Similarity=0.231  Sum_probs=137.0

Q ss_pred             ccccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEE
Q 036300           66 SQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRL  145 (269)
Q Consensus        66 ~~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  145 (269)
                      ..++.+....+.+..+|...|..+ ++|++|++++| .+.+..|..|..+++|++|++++|.++ .+|..+.  ++|++|
T Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~l-~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L  128 (332)
T 2ft3_A           54 PDTTLLDLQNNDISELRKDDFKGL-QHLYALVLVNN-KISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVEL  128 (332)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTC-TTCCEEECCSS-CCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEE
T ss_pred             CCCeEEECCCCcCCccCHhHhhCC-CCCcEEECCCC-ccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEE
Confidence            355566666667777777666665 88889999888 687777888888888888888888888 5665554  678888


Q ss_pred             EccCCcCCCCCccccCCCCCCCEEEccCCcCCc--hhhhhhcCc--------------------ccCCEEeCcCCcCCCc
Q 036300          146 ALAGNQINGQIPASIGGLTKLLIFDLSRNNLSG--SMLLTLGKL--------------------ARLLKLDLSYNNLQEK  203 (269)
Q Consensus       146 ~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~l--------------------~~L~~L~ls~n~l~~~  203 (269)
                      ++++|.++...+..+..+++|++|++++|.++.  ..+..+..+                    ++|++|++++|++++.
T Consensus       129 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~  208 (332)
T 2ft3_A          129 RIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAI  208 (332)
T ss_dssp             ECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCC
T ss_pred             ECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCcc
Confidence            888888875444567777778888877777742  333333322                    3566666666666655


Q ss_pred             CchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300          204 IPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       204 ~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l  269 (269)
                      .+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+  ..+|. .+..+++|+.|++
T Consensus       209 ~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l--~~lp~-~l~~l~~L~~L~l  271 (332)
T 2ft3_A          209 ELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL--SRVPA-GLPDLKLLQVVYL  271 (332)
T ss_dssp             CTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCC--CBCCT-TGGGCTTCCEEEC
T ss_pred             CHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcC--eecCh-hhhcCccCCEEEC
Confidence            556667777777777777777766666777777777777777777  36665 4667777777654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.93  E-value=1.4e-24  Score=187.14  Aligned_cols=195  Identities=20%  Similarity=0.286  Sum_probs=130.2

Q ss_pred             cccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEE
Q 036300           67 QCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLA  146 (269)
Q Consensus        67 ~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  146 (269)
                      .++.+....+.+..+|...|..+ ++|++|++++| .+.+..|..|..+++|++|++++|.++ .+|..+.  ++|++|+
T Consensus        53 ~l~~L~L~~n~i~~~~~~~~~~l-~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~  127 (330)
T 1xku_A           53 DTALLDLQNNKITEIKDGDFKNL-KNLHTLILINN-KISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELR  127 (330)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTC-TTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEE
T ss_pred             CCeEEECCCCcCCEeChhhhccC-CCCCEEECCCC-cCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEE
Confidence            45555566667777777666665 88888888888 677777888888888888888888887 5565443  5666666


Q ss_pred             ccCCcCCCCCccccCCCCCCCEEEccCCcCCc--hhhhhhcCcc---------------------cCCEEeCcCCcCCCc
Q 036300          147 LAGNQINGQIPASIGGLTKLLIFDLSRNNLSG--SMLLTLGKLA---------------------RLLKLDLSYNNLQEK  203 (269)
Q Consensus       147 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~l~---------------------~L~~L~ls~n~l~~~  203 (269)
                      +++|.+++..+..+..+++|++|++++|.+..  ..+..+..++                     +|++|++++|++++.
T Consensus       128 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~  207 (330)
T 1xku_A          128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKV  207 (330)
T ss_dssp             CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEE
T ss_pred             CCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCcc
Confidence            66666664444455666666666666665532  2333444443                     455555555555555


Q ss_pred             CchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300          204 IPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       204 ~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l  269 (269)
                      .|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+  ..+|. .+..+++|++|++
T Consensus       208 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l--~~lp~-~l~~l~~L~~L~l  270 (330)
T 1xku_A          208 DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL--VKVPG-GLADHKYIQVVYL  270 (330)
T ss_dssp             CTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCC--SSCCT-TTTTCSSCCEEEC
T ss_pred             CHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcC--ccCCh-hhccCCCcCEEEC
Confidence            556677777777777777777766666677777777777777777  46664 5666777777654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.93  E-value=3.2e-25  Score=182.81  Aligned_cols=207  Identities=15%  Similarity=0.126  Sum_probs=168.1

Q ss_pred             EEEEEeCCCCCCCcccccccccCCCCCCCcccCchhHHhhcCCccEEEccCCCC-ceeccCccccCCCCCCEEEccc-CC
Q 036300           50 VSAISIGPVYDNSLVCSQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPR-LIGTIPTSIDYLKNLQSLVLLE-KG  127 (269)
Q Consensus        50 v~~l~l~~~~~~~~~~~~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~-l~~~~p~~l~~l~~L~~L~L~~-n~  127 (269)
                      |..-++..+|.   -..++..+....+.+..+|...|..+ ++|++|++++| . +....+..|..+++|++|++++ |.
T Consensus        18 v~c~~l~~ip~---~~~~l~~L~l~~n~l~~i~~~~~~~l-~~L~~L~l~~n-~~l~~i~~~~f~~l~~L~~L~l~~~n~   92 (239)
T 2xwt_C           18 VTCKDIQRIPS---LPPSTQTLKLIETHLRTIPSHAFSNL-PNISRIYVSID-VTLQQLESHSFYNLSKVTHIEIRNTRN   92 (239)
T ss_dssp             EEECSCSSCCC---CCTTCCEEEEESCCCSEECTTTTTTC-TTCCEEEEECC-SSCCEECTTTEESCTTCCEEEEEEETT
T ss_pred             eEccCccccCC---CCCcccEEEEeCCcceEECHHHccCC-CCCcEEeCCCC-CCcceeCHhHcCCCcCCcEEECCCCCC
Confidence            33333555554   22355666666677888998777776 99999999999 6 6665556899999999999998 99


Q ss_pred             CCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCC---EEEccCC-cCCchhhhhhcCcccCC-EEeCcCCcCCC
Q 036300          128 LTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLL---IFDLSRN-NLSGSMLLTLGKLARLL-KLDLSYNNLQE  202 (269)
Q Consensus       128 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~---~L~l~~n-~l~~~~~~~~~~l~~L~-~L~ls~n~l~~  202 (269)
                      +++..+..|.++++|++|++++|.++ .+|. +..+++|+   +|++++| .+++..+..|..+++|+ .|++++|+++.
T Consensus        93 l~~i~~~~f~~l~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~  170 (239)
T 2xwt_C           93 LTYIDPDALKELPLLKFLGIFNTGLK-MFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS  170 (239)
T ss_dssp             CCEECTTSEECCTTCCEEEEEEECCC-SCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE
T ss_pred             eeEcCHHHhCCCCCCCEEeCCCCCCc-cccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc
Confidence            99766778999999999999999999 4776 88888998   9999999 99876667799999999 99999999984


Q ss_pred             cCchhhcCCCCCCEEEccCCc-cCCcchhhhhcC-CCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300          203 KIPKEIGNLHNVTFLDLRSNN-FLGGLVGSIEEM-VSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       203 ~~p~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l  269 (269)
                       +|......++|++|++++|+ +++..+..|..+ ++|++|++++|++  ..+|..   .+++|+.|++
T Consensus       171 -i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l--~~l~~~---~~~~L~~L~l  233 (239)
T 2xwt_C          171 -VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV--TALPSK---GLEHLKELIA  233 (239)
T ss_dssp             -ECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCC--CCCCCT---TCTTCSEEEC
T ss_pred             -cCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcc--ccCChh---HhccCceeec
Confidence             55444344899999999995 987777889999 9999999999999  567764   5667777654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.93  E-value=1.1e-24  Score=184.88  Aligned_cols=171  Identities=22%  Similarity=0.214  Sum_probs=92.1

Q ss_pred             CCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEE
Q 036300           91 NSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFD  170 (269)
Q Consensus        91 ~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  170 (269)
                      +.+++|++++| .+.+..+..|..+++|++|++++|.+++. +.. ..+++|++|++++|.++ .+|..+..+++|++|+
T Consensus        31 ~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~  106 (290)
T 1p9a_G           31 KDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLD  106 (290)
T ss_dssp             TTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC-SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEE
T ss_pred             CCCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCCccCcc-cCC-CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEE
Confidence            45555555555 45554455555555555555555555532 221 45555555555555555 4555555555555555


Q ss_pred             ccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCC
Q 036300          171 LSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFG  250 (269)
Q Consensus       171 l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  250 (269)
                      +++|++++..+..|..+++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..+++|++|++++|++  
T Consensus       107 l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l--  184 (290)
T 1p9a_G          107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL--  184 (290)
T ss_dssp             CCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCC--
T ss_pred             CCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcC--
Confidence            555555544444555555555555555555544444455555555555555555544444455555555555555555  


Q ss_pred             CCCCccccccCcCCceec
Q 036300          251 GGLNGIRWENLQNLEIWI  268 (269)
Q Consensus       251 ~~~p~~~~~~l~~L~~L~  268 (269)
                      ..+|. .+..+++|+.|+
T Consensus       185 ~~ip~-~~~~~~~L~~l~  201 (290)
T 1p9a_G          185 YTIPK-GFFGSHLLPFAF  201 (290)
T ss_dssp             CCCCT-TTTTTCCCSEEE
T ss_pred             CccCh-hhcccccCCeEE
Confidence            34444 333444555444

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.93  E-value=1.6e-24  Score=181.85  Aligned_cols=199  Identities=25%  Similarity=0.279  Sum_probs=168.1

Q ss_pred             CceEeecCCCceEEEEEEeCCCCCCCcccccccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCC
Q 036300           37 QGVSCDFFHGLWHVSAISIGPVYDNSLVCSQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLK  116 (269)
Q Consensus        37 ~gv~C~~~~~~~~v~~l~l~~~~~~~~~~~~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~  116 (269)
                      ..|.|...+    +     ..+|...  ..+++.+....+.+..+|...|..+ ++|++|++++| .+....+..|..++
T Consensus        19 ~~l~~~~~~----l-----~~ip~~~--~~~l~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n-~l~~i~~~~~~~l~   85 (270)
T 2o6q_A           19 NSVDCSSKK----L-----TAIPSNI--PADTKKLDLQSNKLSSLPSKAFHRL-TKLRLLYLNDN-KLQTLPAGIFKELK   85 (270)
T ss_dssp             TEEECTTSC----C-----SSCCSCC--CTTCSEEECCSSCCSCCCTTSSSSC-TTCCEEECCSS-CCSCCCTTTTSSCT
T ss_pred             CEEEccCCC----C-----CccCCCC--CCCCCEEECcCCCCCeeCHHHhcCC-CCCCEEECCCC-ccCeeChhhhcCCC
Confidence            378897542    2     2333322  1355666666677888888777766 99999999999 67765555678999


Q ss_pred             CCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCc
Q 036300          117 NLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLS  196 (269)
Q Consensus       117 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls  196 (269)
                      +|++|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|+.|+++
T Consensus        86 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  165 (270)
T 2o6q_A           86 NLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLY  165 (270)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEec
Confidence            99999999999997666778999999999999999997777788999999999999999997666778999999999999


Q ss_pred             CCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCC
Q 036300          197 YNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPI  248 (269)
Q Consensus       197 ~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  248 (269)
                      +|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++
T Consensus       166 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          166 NNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             SSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence            9999987667789999999999999999987777899999999999999998

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.92  E-value=9.8e-25  Score=197.16  Aligned_cols=199  Identities=19%  Similarity=0.185  Sum_probs=132.5

Q ss_pred             cccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEE
Q 036300           67 QCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLA  146 (269)
Q Consensus        67 ~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  146 (269)
                      .+..+....+.+..++...|..+ ++|++|+|++| .+.+..|..|..+++|++|+|++|.+++..+..|.++++|++|+
T Consensus        33 ~l~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  110 (477)
T 2id5_A           33 ETRLLDLGKNRIKTLNQDEFASF-PHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD  110 (477)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTC-TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred             CCcEEECCCCccceECHhHccCC-CCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence            34455555566666666555555 77777777777 67766677777777777777777777754445567777777777


Q ss_pred             ccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCC
Q 036300          147 LAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLG  226 (269)
Q Consensus       147 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~  226 (269)
                      +++|.+++..|..|..+++|++|++++|.+++..+..|..+++|+.|++++|++++..+..+..+++|+.|++++|.+.+
T Consensus       111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~  190 (477)
T 2id5_A          111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA  190 (477)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred             CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence            77777776666667777777777777777766666666677777777777777765555556666666666666666665


Q ss_pred             cchhhhhcCC------------------------CCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300          227 GLVGSIEEMV------------------------SLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       227 ~~~~~~~~l~------------------------~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l  269 (269)
                      ..+..+..++                        +|++|++++|.+  ..+|...+.++++|+.|++
T Consensus       191 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~L  255 (477)
T 2id5_A          191 IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL--TAVPYLAVRHLVYLRFLNL  255 (477)
T ss_dssp             ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCC--CSCCHHHHTTCTTCCEEEC
T ss_pred             eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcc--cccCHHHhcCccccCeeEC
Confidence            4444444444                        455555555666  3555456777888887764

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.92  E-value=1.1e-24  Score=185.76  Aligned_cols=199  Identities=21%  Similarity=0.231  Sum_probs=151.4

Q ss_pred             ccccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCcee--ccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCC
Q 036300           66 SQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIG--TIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLR  143 (269)
Q Consensus        66 ~~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~  143 (269)
                      .+++.+....+.+..+|..+|..+ ++|++|++++| .+..  ..+..+..+++|++|++++|.+. .+|..+..+++|+
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l-~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~  104 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKL-TQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLE  104 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTC-TTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCC
T ss_pred             CCCCEEECCCCccCccCHhHhhcc-ccCCEEECCCC-ccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCC
Confidence            355566666677778888777665 78888888888 5653  23556667888888888888887 4666677888888


Q ss_pred             EEEccCCcCCCCCc-cccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCC-cCchhhcCCCCCCEEEccC
Q 036300          144 RLALAGNQINGQIP-ASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQE-KIPKEIGNLHNVTFLDLRS  221 (269)
Q Consensus       144 ~L~L~~n~l~~~~p-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~-~~p~~~~~l~~L~~L~L~~  221 (269)
                      +|++++|.+++..+ ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+ ..|..+..+++|++|++++
T Consensus       105 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~  184 (306)
T 2z66_A          105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ  184 (306)
T ss_dssp             EEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred             EEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCC
Confidence            88888888874433 467788888888888888877777778888888888888888875 4677778888888888888


Q ss_pred             CccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300          222 NNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       222 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l  269 (269)
                      |.+++..|..+..+++|++|++++|.+  ..++...+..+++|++|++
T Consensus       185 n~l~~~~~~~~~~l~~L~~L~L~~N~l--~~~~~~~~~~l~~L~~L~L  230 (306)
T 2z66_A          185 CQLEQLSPTAFNSLSSLQVLNMSHNNF--FSLDTFPYKCLNSLQVLDY  230 (306)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECTTSCC--SBCCSGGGTTCTTCCEEEC
T ss_pred             CCcCCcCHHHhcCCCCCCEEECCCCcc--CccChhhccCcccCCEeEC
Confidence            888877777888888888888888888  4455446777888888765

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.92  E-value=2.1e-24  Score=193.31  Aligned_cols=207  Identities=23%  Similarity=0.240  Sum_probs=174.9

Q ss_pred             eCCCCCCCcccccccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCC
Q 036300           55 IGPVYDNSLVCSQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPI  134 (269)
Q Consensus        55 l~~~~~~~~~~~~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~  134 (269)
                      +..+|....  ..+..+....+.+..++...|..+ ++|++|+|++| .+.+..+..|..+++|++|+|++|.+++..+.
T Consensus        55 l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l-~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~  130 (440)
T 3zyj_A           55 LREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHL-RHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDNRLTTIPNG  130 (440)
T ss_dssp             CSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSC-SSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSSCCSSCCTT
T ss_pred             cCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCC-CCCCEEECCCC-cCCccChhhccCCccCCEEECCCCcCCeeCHh
Confidence            344554332  345566666678888888777776 99999999999 78887778999999999999999999966666


Q ss_pred             CCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCc-CCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCC
Q 036300          135 EPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNN-LSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHN  213 (269)
Q Consensus       135 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~  213 (269)
                      .|..+++|++|++++|.++...+..|..+++|++|++++|+ +....+..|..+++|++|++++|+++. +|. +..+++
T Consensus       131 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~  208 (440)
T 3zyj_A          131 AFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IPN-LTPLIK  208 (440)
T ss_dssp             TSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CCC-CTTCSS
T ss_pred             HhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-ccc-cCCCcc
Confidence            89999999999999999996666688999999999999955 443344578999999999999999984 564 788999


Q ss_pred             CCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300          214 VTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       214 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l  269 (269)
                      |++|+|++|.+++..|..|..+++|++|++++|.+  ..++...+.++++|+.|+|
T Consensus       209 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L  262 (440)
T 3zyj_A          209 LDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI--QVIERNAFDNLQSLVEINL  262 (440)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC--CEECTTSSTTCTTCCEEEC
T ss_pred             cCEEECCCCccCccChhhhccCccCCEEECCCCce--eEEChhhhcCCCCCCEEEC
Confidence            99999999999988899999999999999999999  4555568999999999985

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.92  E-value=2.8e-24  Score=192.83  Aligned_cols=123  Identities=23%  Similarity=0.227  Sum_probs=89.8

Q ss_pred             EEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCcc
Q 036300          145 LALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNF  224 (269)
Q Consensus       145 L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l  224 (269)
                      |++++|.+++..|..+..+++|++|++++|.+++..|..|..+++|++|++++|++.+..|..+..+++|++|++++|++
T Consensus       280 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  359 (455)
T 3v47_A          280 CDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHI  359 (455)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCC
T ss_pred             EEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcc
Confidence            33333333333455566677777777777777766677777778888888888888776677778888888888888888


Q ss_pred             CCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300          225 LGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       225 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l  269 (269)
                      ++..|..+..+++|++|++++|++  ..+|...+..+++|++|++
T Consensus       360 ~~~~~~~~~~l~~L~~L~L~~N~l--~~~~~~~~~~l~~L~~L~l  402 (455)
T 3v47_A          360 RALGDQSFLGLPNLKELALDTNQL--KSVPDGIFDRLTSLQKIWL  402 (455)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCC--SCCCTTTTTTCTTCCEEEC
T ss_pred             cccChhhccccccccEEECCCCcc--ccCCHhHhccCCcccEEEc
Confidence            777777888888888888888888  4466556778888888765

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.92  E-value=3.5e-25  Score=203.20  Aligned_cols=225  Identities=16%  Similarity=0.127  Sum_probs=168.6

Q ss_pred             CCCCCCCCCceEeecCCCceEEEEEEeCCCCCCCcccccccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceecc
Q 036300           29 DPFGRTGLQGVSCDFFHGLWHVSAISIGPVYDNSLVCSQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTI  108 (269)
Q Consensus        29 ~~C~~~~~~gv~C~~~~~~~~v~~l~l~~~~~~~~~~~~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~  108 (269)
                      -.|.|.   || ||....       .+..+|+...  ..++.+....+.+..+++..|..+ ++|++|++++| .+.+..
T Consensus         2 ~~C~~~---~~-c~~~~~-------~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~n-~i~~~~   66 (549)
T 2z81_A            2 LSCDAS---GV-CDGRSR-------SFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRAC-ANLQVLILKSS-RINTIE   66 (549)
T ss_dssp             CEECTT---SE-EECTTS-------CCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSC-TTCCEEECTTS-CCCEEC
T ss_pred             ccCCCC---ce-EECCCC-------ccccccccCC--CCccEEECcCCccCccChhhhhcC-CcccEEECCCC-CcCccC
Confidence            358897   87 987643       2334454322  456666666677777766555665 88999999988 788877


Q ss_pred             CccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCC-CCccccCCCCCCCEEEccCCcCCchhh-hhhcC
Q 036300          109 PTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQING-QIPASIGGLTKLLIFDLSRNNLSGSML-LTLGK  186 (269)
Q Consensus       109 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~  186 (269)
                      |..|..+++|++|++++|.+++..|..++++++|++|++++|.+++ ..|..+..+++|++|++++|.+.+.+| ..+..
T Consensus        67 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~  146 (549)
T 2z81_A           67 GDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG  146 (549)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT
T ss_pred             hhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhc
Confidence            7888889999999999999887666668888999999999998875 356678888899999999888444554 57888


Q ss_pred             cccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCC-C-CccccccCcCC
Q 036300          187 LARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGG-L-NGIRWENLQNL  264 (269)
Q Consensus       187 l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~-p~~~~~~l~~L  264 (269)
                      +++|++|++++|++++..|..+..+++|++|++++|.+.......+..+++|++|++++|.+ .+. . +......+++|
T Consensus       147 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~~~~~~L  225 (549)
T 2z81_A          147 LTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNL-ARFQFSPLPVDEVSSPM  225 (549)
T ss_dssp             CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBC-TTCCCCCCSSCCCCCCC
T ss_pred             ccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCcc-ccccccccchhhhhhcc
Confidence            88999999999998888888888888999999998887643333446789999999999999 332 1 22234457777


Q ss_pred             ceecC
Q 036300          265 EIWIF  269 (269)
Q Consensus       265 ~~L~l  269 (269)
                      +.|++
T Consensus       226 ~~L~l  230 (549)
T 2z81_A          226 KKLAF  230 (549)
T ss_dssp             CEEEE
T ss_pred             cceec
Confidence            77753

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.92  E-value=4.3e-24  Score=192.97  Aligned_cols=184  Identities=20%  Similarity=0.249  Sum_probs=165.5

Q ss_pred             cccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcc
Q 036300           79 IEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPA  158 (269)
Q Consensus        79 ~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~  158 (269)
                      ..+|..+    .+++++|++++| .+.+..+..|..+++|++|+|++|.+++..|..|.++++|++|++++|.++...+.
T Consensus        24 ~~ip~~~----~~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~   98 (477)
T 2id5_A           24 VAVPEGI----PTETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLG   98 (477)
T ss_dssp             SSCCSCC----CTTCSEEECCSS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTT
T ss_pred             CcCCCCC----CCCCcEEECCCC-ccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcc
Confidence            4455543    478999999999 78888888999999999999999999988899999999999999999999955556


Q ss_pred             ccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCC
Q 036300          159 SIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSL  238 (269)
Q Consensus       159 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  238 (269)
                      .|..+++|++|++++|.+++..+..|..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|
T Consensus        99 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  178 (477)
T 2id5_A           99 VFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGL  178 (477)
T ss_dssp             SSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTC
T ss_pred             cccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCC
Confidence            78999999999999999998888899999999999999999998888899999999999999999998888889999999


Q ss_pred             CeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300          239 KEMVVSNNPIFGGGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       239 ~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l  269 (269)
                      +.|++++|.+  ..++...+..+++|+.|++
T Consensus       179 ~~L~l~~n~i--~~~~~~~~~~l~~L~~L~l  207 (477)
T 2id5_A          179 IVLRLRHLNI--NAIRDYSFKRLYRLKVLEI  207 (477)
T ss_dssp             CEEEEESCCC--CEECTTCSCSCTTCCEEEE
T ss_pred             cEEeCCCCcC--cEeChhhcccCcccceeeC
Confidence            9999999999  4555567888999888864

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.92  E-value=2.5e-24  Score=173.79  Aligned_cols=163  Identities=21%  Similarity=0.159  Sum_probs=139.9

Q ss_pred             cCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEE
Q 036300           90 ANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIF  169 (269)
Q Consensus        90 ~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  169 (269)
                      .++|++|++++| .+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus        27 ~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  105 (208)
T 2o6s_A           27 PAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKEL  105 (208)
T ss_dssp             CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEE
Confidence            468999999999 7887666678899999999999999996666678899999999999999996555668899999999


Q ss_pred             EccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCC
Q 036300          170 DLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIF  249 (269)
Q Consensus       170 ~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  249 (269)
                      ++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+.+       .+++|++|+++.|.+ 
T Consensus       106 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~-  177 (208)
T 2o6s_A          106 ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKH-  177 (208)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHC-
T ss_pred             EcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhC-
Confidence            999999997777778899999999999999997666668899999999999998874       456889999999999 


Q ss_pred             CCCCCccccccCc
Q 036300          250 GGGLNGIRWENLQ  262 (269)
Q Consensus       250 ~~~~p~~~~~~l~  262 (269)
                      .+.+|. .++.++
T Consensus       178 ~g~ip~-~~~~l~  189 (208)
T 2o6s_A          178 SGVVRN-SAGSVA  189 (208)
T ss_dssp             TTTBBC-TTSSBC
T ss_pred             Cceeec-cCcccc
Confidence            888886 555554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.91  E-value=1.7e-23  Score=173.82  Aligned_cols=173  Identities=21%  Similarity=0.261  Sum_probs=154.2

Q ss_pred             CCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEE
Q 036300           91 NSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFD  170 (269)
Q Consensus        91 ~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  170 (269)
                      ...++++++++ .+. .+|..+.  ++++.|++++|.+++..+..+.++++|++|++++|.+++..+..|..+++|++|+
T Consensus        14 ~~~~~l~~~~~-~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~   89 (251)
T 3m19_A           14 EGKKEVDCQGK-SLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG   89 (251)
T ss_dssp             GGGTEEECTTC-CCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCeEEecCCC-Ccc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEE
Confidence            45678999998 555 5776665  6899999999999988888899999999999999999987778899999999999


Q ss_pred             ccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCC
Q 036300          171 LSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFG  250 (269)
Q Consensus       171 l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  250 (269)
                      +++|.+++..+..|..+++|++|++++|++++..+..+..+++|++|+|++|++++..+..+..+++|++|++++|.+  
T Consensus        90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l--  167 (251)
T 3m19_A           90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL--  167 (251)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC--
T ss_pred             CCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcC--
Confidence            999999977778889999999999999999976667788999999999999999987777899999999999999999  


Q ss_pred             CCCCccccccCcCCceecC
Q 036300          251 GGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       251 ~~~p~~~~~~l~~L~~L~l  269 (269)
                      ..++...+..+++|+.|++
T Consensus       168 ~~~~~~~~~~l~~L~~L~l  186 (251)
T 3m19_A          168 QSVPHGAFDRLGKLQTITL  186 (251)
T ss_dssp             SCCCTTTTTTCTTCCEEEC
T ss_pred             CccCHHHHhCCCCCCEEEe
Confidence            4566567889999999875

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.91  E-value=2.7e-23  Score=174.59  Aligned_cols=161  Identities=28%  Similarity=0.321  Sum_probs=137.8

Q ss_pred             cCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEE
Q 036300           90 ANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIF  169 (269)
Q Consensus        90 ~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  169 (269)
                      +++|++|++++| .+.+ + +.+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus        62 l~~L~~L~l~~n-~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  138 (272)
T 3rfs_A           62 LPNVRYLALGGN-KLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL  138 (272)
T ss_dssp             CTTCCEEECTTS-CCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCcEEECCCC-CCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEE
Confidence            488999999999 6765 3 478889999999999999997777778899999999999999996666678889999999


Q ss_pred             EccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCC
Q 036300          170 DLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIF  249 (269)
Q Consensus       170 ~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  249 (269)
                      ++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++ 
T Consensus       139 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~-  217 (272)
T 3rfs_A          139 NLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW-  217 (272)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB-
T ss_pred             ECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc-
Confidence            9999999877777788899999999999999877667778899999999999999988887888999999999999988 


Q ss_pred             CCCCC
Q 036300          250 GGGLN  254 (269)
Q Consensus       250 ~~~~p  254 (269)
                      .+..|
T Consensus       218 ~~~~~  222 (272)
T 3rfs_A          218 DCTCP  222 (272)
T ss_dssp             CCCTT
T ss_pred             cccCc
Confidence            55444

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.91  E-value=1.2e-23  Score=195.20  Aligned_cols=136  Identities=20%  Similarity=0.169  Sum_probs=67.5

Q ss_pred             cccccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCE
Q 036300           65 CSQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRR  144 (269)
Q Consensus        65 ~~~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  144 (269)
                      +.+++.+....+.+..+++..|.++ ++|++|++++| .+.+..|..|+.+++|++|++++|.+++..+..+.++++|++
T Consensus        56 l~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~  133 (606)
T 3t6q_A           56 LINLTFLDLTRCQIYWIHEDTFQSQ-HRLDTLVLTAN-PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLES  133 (606)
T ss_dssp             CTTCSEEECTTCCCCEECTTTTTTC-TTCCEEECTTC-CCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCE
T ss_pred             CccceEEECCCCccceeChhhccCc-cccCeeeCCCC-cccccChhhhcccccccEeeccccCcccCCcchhccCCcccE
Confidence            3334444444344444433333333 55555555555 444444555555555555555555555433444555555555


Q ss_pred             EEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCC--EEeCcCCcCCC
Q 036300          145 LALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLL--KLDLSYNNLQE  202 (269)
Q Consensus       145 L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~--~L~ls~n~l~~  202 (269)
                      |++++|.+++..+..+..+++|++|++++|.+++..+..++.+++|+  .|++++|.+.+
T Consensus       134 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~  193 (606)
T 3t6q_A          134 LYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG  193 (606)
T ss_dssp             EECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCE
T ss_pred             EECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCc
Confidence            55555555532222233355555555555555555555555555555  55555555544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.91  E-value=9.9e-25  Score=189.92  Aligned_cols=205  Identities=21%  Similarity=0.202  Sum_probs=162.9

Q ss_pred             CCCCCCCCCCceEeecCCCceEEEEEEeCCCCCCCcccccccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceec
Q 036300           28 PDPFGRTGLQGVSCDFFHGLWHVSAISIGPVYDNSLVCSQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGT  107 (269)
Q Consensus        28 ~~~C~~~~~~gv~C~~~~~~~~v~~l~l~~~~~~~~~~~~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~  107 (269)
                      ...|.|.   |+ |+..++       .+..+|....  .++..+....+.+..+|...+..+ ++|++|++++| .+.+.
T Consensus        27 ~~~C~~~---~~-c~~~~~-------~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l-~~L~~L~L~~n-~l~~~   91 (353)
T 2z80_A           27 SLSCDRN---GI-CKGSSG-------SLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRC-VNLQALVLTSN-GINTI   91 (353)
T ss_dssp             CCEECTT---SE-EECCST-------TCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTC-TTCCEEECTTS-CCCEE
T ss_pred             CCCCCCC---eE-eeCCCC-------Cccccccccc--ccCcEEECCCCcCcccCHHHhccC-CCCCEEECCCC-ccCcc
Confidence            3789996   77 876543       2334444322  356667777777888888766665 89999999999 78887


Q ss_pred             cCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcc--ccCCCCCCCEEEccCC-cCCchhhhhh
Q 036300          108 IPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPA--SIGGLTKLLIFDLSRN-NLSGSMLLTL  184 (269)
Q Consensus       108 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~l~~n-~l~~~~~~~~  184 (269)
                      .|..|..+++|++|++++|.+++..+..+.++++|++|++++|.++ .+|.  .+..+++|++|++++| .+....+..+
T Consensus        92 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~  170 (353)
T 2z80_A           92 EEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF  170 (353)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT
T ss_pred             CHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHc
Confidence            7778999999999999999998544444888999999999999998 5554  6888999999999998 4665566788


Q ss_pred             cCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCC
Q 036300          185 GKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPI  248 (269)
Q Consensus       185 ~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  248 (269)
                      ..+++|++|++++|++.+..|..+..+++|++|++++|.++......+..+++|++|++++|.+
T Consensus       171 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l  234 (353)
T 2z80_A          171 AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDL  234 (353)
T ss_dssp             TTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBC
T ss_pred             cCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcc
Confidence            8899999999999999888888899999999999999998755444566789999999999998

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.91  E-value=3.4e-23  Score=174.03  Aligned_cols=173  Identities=26%  Similarity=0.307  Sum_probs=153.5

Q ss_pred             cCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEE
Q 036300           90 ANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIF  169 (269)
Q Consensus        90 ~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  169 (269)
                      +++|+.|++++| .+.. ++ .+..+++|++|++++|.+++ + ..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus        40 l~~L~~L~l~~~-~i~~-~~-~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  114 (272)
T 3rfs_A           40 LNSIDQIIANNS-DIKS-VQ-GIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL  114 (272)
T ss_dssp             HTTCCEEECTTS-CCCC-CT-TGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccceeeeeeCCC-Cccc-cc-ccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence            489999999999 5553 33 58899999999999999985 3 478999999999999999997777778999999999


Q ss_pred             EccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCC
Q 036300          170 DLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIF  249 (269)
Q Consensus       170 ~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  249 (269)
                      ++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+ 
T Consensus       115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l-  193 (272)
T 3rfs_A          115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL-  193 (272)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-
T ss_pred             ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC-
Confidence            9999999977777889999999999999999987777789999999999999999988888889999999999999999 


Q ss_pred             CCCCCccccccCcCCceecC
Q 036300          250 GGGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       250 ~~~~p~~~~~~l~~L~~L~l  269 (269)
                      . .++...+..+++|+.|++
T Consensus       194 ~-~~~~~~~~~l~~L~~L~l  212 (272)
T 3rfs_A          194 K-SVPDGVFDRLTSLQYIWL  212 (272)
T ss_dssp             S-CCCTTTTTTCTTCCEEEC
T ss_pred             C-ccCHHHHhCCcCCCEEEc
Confidence            4 455557889999999875

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=9.8e-24  Score=177.46  Aligned_cols=183  Identities=23%  Similarity=0.234  Sum_probs=157.2

Q ss_pred             cccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcc
Q 036300           79 IEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPA  158 (269)
Q Consensus        79 ~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~  158 (269)
                      .++|..+    .++|++|++++| .+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+.
T Consensus        20 ~~ip~~l----~~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~   94 (276)
T 2z62_A           20 YKIPDNL----PFSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG   94 (276)
T ss_dssp             SSCCSSS----CTTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred             cccCCCC----CCCccEEECCCC-cccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChh
Confidence            3455543    468999999999 78887777899999999999999999977777899999999999999999977778


Q ss_pred             ccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCc-CchhhcCCCCCCEEEccCCccCCcchhhhhcCCC
Q 036300          159 SIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEK-IPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVS  237 (269)
Q Consensus       159 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  237 (269)
                      .+..+++|++|++++|.+++..+..+..+++|++|++++|++.+. +|..+..+++|++|++++|++++..+..+..+.+
T Consensus        95 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  174 (276)
T 2z62_A           95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ  174 (276)
T ss_dssp             TTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHT
T ss_pred             hhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhh
Confidence            899999999999999999977666799999999999999999873 6889999999999999999999877778877777


Q ss_pred             CC----eEEccCCCCCCCCCCccccccCcCCceecC
Q 036300          238 LK----EMVVSNNPIFGGGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       238 L~----~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l  269 (269)
                      |+    +|++++|.+  ..++...+ ...+|+.|++
T Consensus       175 L~~l~l~L~ls~n~l--~~~~~~~~-~~~~L~~L~L  207 (276)
T 2z62_A          175 MPLLNLSLDLSLNPM--NFIQPGAF-KEIRLKELAL  207 (276)
T ss_dssp             CTTCCEEEECCSSCC--CEECTTSS-CSCCEEEEEC
T ss_pred             ccccceeeecCCCcc--cccCcccc-CCCcccEEEC
Confidence            77    899999999  55655344 3447887764

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.91  E-value=2.4e-23  Score=183.49  Aligned_cols=113  Identities=19%  Similarity=0.147  Sum_probs=85.1

Q ss_pred             ccccccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCC
Q 036300           64 VCSQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLR  143 (269)
Q Consensus        64 ~~~~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~  143 (269)
                      .+.+++.+....+.+..+|...|..+ ++|++|++++| .+.+..|..+..+++|++|++++|.++...+..+.++++|+
T Consensus        67 ~l~~L~~L~L~~n~i~~~~~~~~~~l-~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~  144 (390)
T 3o6n_A           67 SFRQVELLNLNDLQIEEIDTYAFAYA-HTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT  144 (390)
T ss_dssp             HCCCCSEEECTTSCCCEECTTTTTTC-TTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             ccccCcEEECCCCcccccChhhccCC-CCcCEEECCCC-CCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCc
Confidence            34556666666677777777666665 88888888888 67777677788888888888888888843333467888888


Q ss_pred             EEEccCCcCCCCCccccCCCCCCCEEEccCCcCCc
Q 036300          144 RLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSG  178 (269)
Q Consensus       144 ~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~  178 (269)
                      +|++++|.+++..|..+..+++|++|++++|.+++
T Consensus       145 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  179 (390)
T 3o6n_A          145 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH  179 (390)
T ss_dssp             EEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred             EEECCCCccCccChhhccCCCCCCEEECCCCcCCc
Confidence            88888888886666677888888888888887764

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.91  E-value=2.9e-23  Score=192.61  Aligned_cols=175  Identities=19%  Similarity=0.169  Sum_probs=126.0

Q ss_pred             CCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCC-CCCCCCCCEEEccCCcCCCCCccccCCCCCCCEE
Q 036300           91 NSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIE-PSKLVNLRRLALAGNQINGQIPASIGGLTKLLIF  169 (269)
Q Consensus        91 ~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  169 (269)
                      ++|++|++++| .+.+..|..+..+++|++|++++|.+.+..+.. +..+++|++|++++|.+++..|..+..+++|++|
T Consensus       376 ~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  454 (606)
T 3t6q_A          376 SHLQSLNLSYN-EPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHL  454 (606)
T ss_dssp             TTCCEEECCSC-SCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEE
T ss_pred             CCCCEEECCCC-cCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEE
Confidence            66666666666 566666666666677777777777766554433 6677777777777777776666677777777777


Q ss_pred             EccCCcCCch---hhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCC
Q 036300          170 DLSRNNLSGS---MLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNN  246 (269)
Q Consensus       170 ~l~~n~l~~~---~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  246 (269)
                      ++++|.+++.   .+..+..+++|++|++++|++++..|..+..+++|++|++++|++++..|..+..++.| +|++++|
T Consensus       455 ~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N  533 (606)
T 3t6q_A          455 NLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN  533 (606)
T ss_dssp             ECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS
T ss_pred             ECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCC
Confidence            7777777652   22456777788888888888877777778888888888888888887778888888888 8888888


Q ss_pred             CCCCCCCCccccccCcCCceecC
Q 036300          247 PIFGGGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       247 ~l~~~~~p~~~~~~l~~L~~L~l  269 (269)
                      .+ . .++...+..+++|+.|++
T Consensus       534 ~l-~-~~~~~~~~~l~~L~~L~l  554 (606)
T 3t6q_A          534 HI-S-IILPSLLPILSQQRTINL  554 (606)
T ss_dssp             CC-C-CCCGGGHHHHHTSSEEEC
T ss_pred             cc-c-ccCHhhcccCCCCCEEeC
Confidence            88 4 344446777888887764

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.90  E-value=2.5e-23  Score=193.15  Aligned_cols=199  Identities=19%  Similarity=0.175  Sum_probs=138.3

Q ss_pred             cccccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCE
Q 036300           65 CSQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRR  144 (269)
Q Consensus        65 ~~~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  144 (269)
                      +..+..+....+.+..+|...|..+ ++|++|+|++| .+.+..|..|+.+++|++|+|++|.+++..+..|.++++|++
T Consensus        74 l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~  151 (597)
T 3oja_B           74 FRQVELLNLNDLQIEEIDTYAFAYA-HTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT  151 (597)
T ss_dssp             CCCCSEEECTTSCCCEECTTTTTTC-TTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCCcEEECCCCCCCCCChHHhcCC-CCCCEEECCCC-cCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCE
Confidence            4455555555566666766555554 77888888877 677766666777777888888887777444444677777777


Q ss_pred             EEccCCcCCCCCccccCCCCCCCEEEccCCcCCchh--------------------------------------------
Q 036300          145 LALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSM--------------------------------------------  180 (269)
Q Consensus       145 L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~--------------------------------------------  180 (269)
                      |++++|.+++..|..|..+++|++|++++|.+++..                                            
T Consensus       152 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~  231 (597)
T 3oja_B          152 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN  231 (597)
T ss_dssp             EECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCC
T ss_pred             EEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccC
Confidence            777777777666666777777777777777665321                                            


Q ss_pred             ---------------hhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccC
Q 036300          181 ---------------LLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSN  245 (269)
Q Consensus       181 ---------------~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  245 (269)
                                     +..+..+++|+.|++++|.+.+..|..+..+++|+.|+|++|.+++ +|..+..+++|++|++++
T Consensus       232 ~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~  310 (597)
T 3oja_B          232 VELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSH  310 (597)
T ss_dssp             SCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCS
T ss_pred             CCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCC
Confidence                           1235566778888888888887777778888888888888888774 455566677777888887


Q ss_pred             CCCCCCCCCccccccCcCCceecC
Q 036300          246 NPIFGGGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       246 N~l~~~~~p~~~~~~l~~L~~L~l  269 (269)
                      |.+  ..+|. .+..+++|++|++
T Consensus       311 N~l--~~i~~-~~~~l~~L~~L~L  331 (597)
T 3oja_B          311 NHL--LHVER-NQPQFDRLENLYL  331 (597)
T ss_dssp             SCC--CCCGG-GHHHHTTCSEEEC
T ss_pred             CCC--CccCc-ccccCCCCCEEEC
Confidence            777  35664 4566666666654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.90  E-value=2.8e-23  Score=195.33  Aligned_cols=143  Identities=23%  Similarity=0.184  Sum_probs=103.8

Q ss_pred             ccccccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCC
Q 036300           64 VCSQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLR  143 (269)
Q Consensus        64 ~~~~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~  143 (269)
                      .+.+++.+....+.+..+++..|.++ ++|++|++++| .+.+..+..|+.+++|++|++++|.+++..|..|+++++|+
T Consensus        47 ~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  124 (680)
T 1ziw_A           47 RYSQLTSLDVGFNTISKLEPELCQKL-PMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLI  124 (680)
T ss_dssp             GGTTCSEEECCSSCCCCCCTTHHHHC-TTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCC
T ss_pred             CCCcCcEEECCCCccCccCHHHHhcc-cCcCEEECCCC-ccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCC
Confidence            45556666666566666666666665 78888888888 56654444678888888888888888766667788888888


Q ss_pred             EEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhc--CcccCCEEeCcCCcCCCcCchhh
Q 036300          144 RLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLG--KLARLLKLDLSYNNLQEKIPKEI  208 (269)
Q Consensus       144 ~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~ls~n~l~~~~p~~~  208 (269)
                      +|++++|.+++..|..+..+++|++|++++|.+++..+..+.  .+++|+.|++++|++++..|..+
T Consensus       125 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~  191 (680)
T 1ziw_A          125 TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCF  191 (680)
T ss_dssp             EEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGG
T ss_pred             EEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhh
Confidence            888888888777777777888888888888888766666554  44778888888888776555443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.90  E-value=1.7e-23  Score=194.23  Aligned_cols=198  Identities=20%  Similarity=0.164  Sum_probs=164.5

Q ss_pred             cccccccCCCCCCCccc---CchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCC-CCCCCCC
Q 036300           65 CSQCKIFKPPLQSPIEI---PSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLP-IEPSKLV  140 (269)
Q Consensus        65 ~~~l~~~~~~~~~~~~l---p~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~  140 (269)
                      +.++..+....+.+..+   |..+ .. +++|++|++++| .+.+ +|..+..+++|+.|++++|.+.+..| ..+..++
T Consensus       349 l~~L~~L~ls~n~l~~~~~~~~~~-~~-~~~L~~L~L~~n-~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  424 (606)
T 3vq2_A          349 LPSLSYLDLSRNALSFSGCCSYSD-LG-TNSLRHLDLSFN-GAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE  424 (606)
T ss_dssp             CTTCCEEECCSSCEEEEEECCHHH-HC-CSCCCEEECCSC-SEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCT
T ss_pred             CCCCCEEECcCCccCCCcchhhhh-cc-CCcccEeECCCC-cccc-chhhccCCCCCCeeECCCCccCCccChhhhhccc
Confidence            33444444444554444   4443 44 488999999998 5555 66788899999999999999987777 6788999


Q ss_pred             CCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCc-hhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEc
Q 036300          141 NLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSG-SMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDL  219 (269)
Q Consensus       141 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L  219 (269)
                      +|++|++++|.+++..|..+..+++|++|++++|.+++ .+|..+..+++|+.|++++|++++..|..+..+++|++|++
T Consensus       425 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  504 (606)
T 3vq2_A          425 KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNM  504 (606)
T ss_dssp             TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             cCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEEC
Confidence            99999999999998888889999999999999999987 36888899999999999999999888888999999999999


Q ss_pred             cCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCc-CCceecC
Q 036300          220 RSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQ-NLEIWIF  269 (269)
Q Consensus       220 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~-~L~~L~l  269 (269)
                      ++|++++..|..+..+++|++|++++|++  ..+|. .+..++ +|++|++
T Consensus       505 s~N~l~~~~~~~~~~l~~L~~L~l~~N~l--~~~p~-~~~~l~~~L~~l~l  552 (606)
T 3vq2_A          505 SHNNLLFLDSSHYNQLYSLSTLDCSFNRI--ETSKG-ILQHFPKSLAFFNL  552 (606)
T ss_dssp             CSSCCSCEEGGGTTTCTTCCEEECTTSCC--CCEES-CGGGSCTTCCEEEC
T ss_pred             CCCcCCCcCHHHccCCCcCCEEECCCCcC--cccCH-hHhhhcccCcEEEc
Confidence            99999988899999999999999999999  47886 477886 5888875

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.90  E-value=6.5e-23  Score=176.74  Aligned_cols=230  Identities=15%  Similarity=0.150  Sum_probs=133.0

Q ss_pred             CCCCCCCCCCCCCCCCCCCceEeecCCC-------ceEEEEEEeC-----CCCCC-CcccccccccCCCCCCCcccCchh
Q 036300           19 KWWNGSDLYPDPFGRTGLQGVSCDFFHG-------LWHVSAISIG-----PVYDN-SLVCSQCKIFKPPLQSPIEIPSSN   85 (269)
Q Consensus        19 ~~W~~~~~~~~~C~~~~~~gv~C~~~~~-------~~~v~~l~l~-----~~~~~-~~~~~~l~~~~~~~~~~~~lp~~~   85 (269)
                      ..|....+.+..|.+.   .+.|...+-       ...++.+++.     .+++. ...+.+++.+....+.+..+++..
T Consensus        19 ~~~~~~cp~~c~c~l~---~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~   95 (330)
T 1xku_A           19 EPMGPVCPFRCQCHLR---VVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA   95 (330)
T ss_dssp             ---CCCCCTTCEEETT---EEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTT
T ss_pred             ccccCCCCCCCcCCCe---EEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHH
Confidence            4565554434556676   788853210       0134556652     22221 223445555555545455553333


Q ss_pred             HHhhcCCccEEEccCCC--------------------CceeccCccccCCCCCCEEEcccCCCCC--CCCCCCCCCCCCC
Q 036300           86 WQKLANSLDSLEFGSNP--------------------RLIGTIPTSIDYLKNLQSLVLLEKGLTG--KLPIEPSKLVNLR  143 (269)
Q Consensus        86 ~~~l~~~L~~L~l~~n~--------------------~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~  143 (269)
                      |..+ ++|++|++++|.                    .+.+..+..+..+++|++|++++|.+..  ..+..+.++++|+
T Consensus        96 ~~~l-~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~  174 (330)
T 1xku_A           96 FAPL-VKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS  174 (330)
T ss_dssp             TTTC-TTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCC
T ss_pred             hcCC-CCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcC
Confidence            3333 555555555551                    2333223345566666666666666642  4455566666777


Q ss_pred             EEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCc
Q 036300          144 RLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNN  223 (269)
Q Consensus       144 ~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~  223 (269)
                      +|++++|.++ .+|..+.  ++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|++|++++|.
T Consensus       175 ~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~  251 (330)
T 1xku_A          175 YIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK  251 (330)
T ss_dssp             EEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC
T ss_pred             EEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc
Confidence            7777776666 4454332  567777777777766666677777777777777777776656667777777777777777


Q ss_pred             cCCcchhhhhcCCCCCeEEccCCCCCCCCCCcccc
Q 036300          224 FLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRW  258 (269)
Q Consensus       224 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~  258 (269)
                      ++ .+|..+..+++|++|++++|++  ..++...|
T Consensus       252 l~-~lp~~l~~l~~L~~L~l~~N~i--~~~~~~~f  283 (330)
T 1xku_A          252 LV-KVPGGLADHKYIQVVYLHNNNI--SAIGSNDF  283 (330)
T ss_dssp             CS-SCCTTTTTCSSCCEEECCSSCC--CCCCTTSS
T ss_pred             Cc-cCChhhccCCCcCEEECCCCcC--CccChhhc
Confidence            76 5666677777777777777777  44443333

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.90  E-value=3.1e-24  Score=183.87  Aligned_cols=170  Identities=19%  Similarity=0.188  Sum_probs=80.6

Q ss_pred             CCccEEEccCCCCceeccCccc--cCCCCCCEEEcccCCCCCCCCCCCCCC-----CCCCEEEccCCcCCCCCccccCCC
Q 036300           91 NSLDSLEFGSNPRLIGTIPTSI--DYLKNLQSLVLLEKGLTGKLPIEPSKL-----VNLRRLALAGNQINGQIPASIGGL  163 (269)
Q Consensus        91 ~~L~~L~l~~n~~l~~~~p~~l--~~l~~L~~L~L~~n~l~~~~p~~~~~l-----~~L~~L~L~~n~l~~~~p~~l~~l  163 (269)
                      ++|++|++++| .+.+.+|..+  ..+++|++|++++|.+++. |..+..+     ++|++|++++|++++..|..+..+
T Consensus        95 ~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  172 (312)
T 1wwl_A           95 SGLQELTLENL-EVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF  172 (312)
T ss_dssp             SCCCEEEEEEE-BCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred             CCccEEEccCC-cccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence            45555555555 4554455443  4555555555555555533 4444433     455555555555544333444555


Q ss_pred             CCCCEEEccCCcCCch--hhhhh--cCc---------------------------ccCCEEeCcCCcCCCcCc-hhhcCC
Q 036300          164 TKLLIFDLSRNNLSGS--MLLTL--GKL---------------------------ARLLKLDLSYNNLQEKIP-KEIGNL  211 (269)
Q Consensus       164 ~~L~~L~l~~n~l~~~--~~~~~--~~l---------------------------~~L~~L~ls~n~l~~~~p-~~~~~l  211 (269)
                      ++|++|++++|++.+.  .+..+  ..+                           ++|++|++++|++++..| ..+..+
T Consensus       173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l  252 (312)
T 1wwl_A          173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP  252 (312)
T ss_dssp             SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred             CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence            5555555555544432  12222  344                           455555555555544332 223334


Q ss_pred             CCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300          212 HNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       212 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l  269 (269)
                      ++|++|++++|.++ .+|..+.  ++|++|++++|++  ..+|.  +..+++|++|++
T Consensus       253 ~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l--~~~p~--~~~l~~L~~L~L  303 (312)
T 1wwl_A          253 SQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRL--DRNPS--PDELPQVGNLSL  303 (312)
T ss_dssp             TTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCC--CSCCC--TTTSCEEEEEEC
T ss_pred             CCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCC--CCChh--HhhCCCCCEEec
Confidence            45555555555554 3343333  4555555555555  22232  455555555543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.90  E-value=5.9e-24  Score=197.30  Aligned_cols=198  Identities=19%  Similarity=0.207  Sum_probs=131.9

Q ss_pred             ccccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEE
Q 036300           66 SQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRL  145 (269)
Q Consensus        66 ~~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  145 (269)
                      ..++.+....+.+..+|...|.++ ++|++|++++| .+.+..|..|..+++|++|++++|.+++..|..|+++++|++|
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~n-~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  109 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYSFSNF-SELQWLDLSRC-EIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENL  109 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTC-TTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEE
T ss_pred             CCcCEEECCCCCcCEeChhhccCC-ccCcEEeCCCC-cccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEE
Confidence            344555555566666666555555 77777777777 6766666677777777777777777776667777777777777


Q ss_pred             EccCCcCCCCCccccCCCCCCCEEEccCCcCCc-hhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCC----CEEEcc
Q 036300          146 ALAGNQINGQIPASIGGLTKLLIFDLSRNNLSG-SMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNV----TFLDLR  220 (269)
Q Consensus       146 ~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L----~~L~L~  220 (269)
                      ++++|.+++..+..+..+++|++|++++|.+++ .+|..++++++|++|++++|++++..|..++.+++|    .+|+++
T Consensus       110 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~  189 (606)
T 3vq2_A          110 VAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMS  189 (606)
T ss_dssp             ECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECT
T ss_pred             EccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeecc
Confidence            777777775555667777777777777777764 457777777777777777777776666655554444    367777


Q ss_pred             CCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCcee
Q 036300          221 SNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIW  267 (269)
Q Consensus       221 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L  267 (269)
                      +|.+++..+..+... +|++|++++|.+ .+......+.++++|+.+
T Consensus       190 ~n~l~~~~~~~~~~~-~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~l  234 (606)
T 3vq2_A          190 LNPIDFIQDQAFQGI-KLHELTLRGNFN-SSNIMKTCLQNLAGLHVH  234 (606)
T ss_dssp             TCCCCEECTTTTTTC-EEEEEEEESCCS-CHHHHHHHHHTTTTCEEE
T ss_pred             CCCcceeCcccccCc-eeeeeeccCCcc-chhHHHHHhccccccccc
Confidence            777775544444443 777777777777 322222345555555543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.90  E-value=5.3e-23  Score=184.80  Aligned_cols=183  Identities=20%  Similarity=0.202  Sum_probs=144.0

Q ss_pred             CcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCc
Q 036300           78 PIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIP  157 (269)
Q Consensus        78 ~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p  157 (269)
                      +.++|..+    .+++++|+|++| .+.+..+..|..+++|++|+|++|.+++..+..|.++++|++|+|++|.++...+
T Consensus        66 l~~iP~~~----~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  140 (452)
T 3zyi_A           66 LSEVPQGI----PSNTRYLNLMEN-NIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPS  140 (452)
T ss_dssp             CSSCCSCC----CTTCSEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCT
T ss_pred             cCccCCCC----CCCccEEECcCC-cCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccCh
Confidence            44566544    478999999999 7998888999999999999999999998888899999999999999999996666


Q ss_pred             cccCCCCCCCEEEccCCcCCchhhhhhc-------------------------CcccCCEEeCcCCcCCCcCchhhcCCC
Q 036300          158 ASIGGLTKLLIFDLSRNNLSGSMLLTLG-------------------------KLARLLKLDLSYNNLQEKIPKEIGNLH  212 (269)
Q Consensus       158 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~-------------------------~l~~L~~L~ls~n~l~~~~p~~~~~l~  212 (269)
                      ..|..+++|++|++++|.++...+..|.                         .+++|++|++++|++++ +| .+..++
T Consensus       141 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~  218 (452)
T 3zyi_A          141 GAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLV  218 (452)
T ss_dssp             TTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCT
T ss_pred             hhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccc
Confidence            6789999999999999998854443444                         44555555555565553 33 355667


Q ss_pred             CCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300          213 NVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       213 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l  269 (269)
                      +|++|++++|.+++..|..|..+++|++|++++|.+  ..++...+..+++|+.|+|
T Consensus       219 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L  273 (452)
T 3zyi_A          219 GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV--SLIERNAFDGLASLVELNL  273 (452)
T ss_dssp             TCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCC--CEECTTTTTTCTTCCEEEC
T ss_pred             cccEEECcCCcCcccCcccccCccCCCEEEeCCCcC--ceECHHHhcCCCCCCEEEC
Confidence            777777777777777777888888888888888888  3444446778888888765

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.90  E-value=1.8e-22  Score=171.26  Aligned_cols=177  Identities=21%  Similarity=0.171  Sum_probs=155.6

Q ss_pred             ccccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEE
Q 036300           66 SQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRL  145 (269)
Q Consensus        66 ~~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  145 (269)
                      ..+..+....+.++.++...|..+ ++|++|++++| .+.+..+  ...+++|++|++++|.++ .+|..+..+++|++|
T Consensus        31 ~~l~~L~L~~N~l~~~~~~~~~~l-~~L~~L~L~~n-~l~~~~~--~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L  105 (290)
T 1p9a_G           31 KDTTILHLSENLLYTFSLATLMPY-TRLTQLNLDRA-ELTKLQV--DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVL  105 (290)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTC-TTCCEEECTTS-CCCEEEC--CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEE
T ss_pred             CCCCEEEcCCCcCCccCHHHhhcC-CCCCEEECCCC-ccCcccC--CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEE
Confidence            455666667777888887777776 99999999999 6776433  378999999999999999 788899999999999


Q ss_pred             EccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccC
Q 036300          146 ALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFL  225 (269)
Q Consensus       146 ~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~  225 (269)
                      ++++|++++..|..|..+++|++|++++|++++..+..|..+++|+.|++++|++++..+..+..+++|++|++++|+++
T Consensus       106 ~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~  185 (290)
T 1p9a_G          106 DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY  185 (290)
T ss_dssp             ECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             ECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC
Confidence            99999999666678999999999999999999777777889999999999999999765566788999999999999998


Q ss_pred             CcchhhhhcCCCCCeEEccCCCC
Q 036300          226 GGLVGSIEEMVSLKEMVVSNNPI  248 (269)
Q Consensus       226 ~~~~~~~~~l~~L~~L~l~~N~l  248 (269)
                       .+|..+....+|+.+++++|++
T Consensus       186 -~ip~~~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          186 -TIPKGFFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             -CCCTTTTTTCCCSEEECCSCCB
T ss_pred             -ccChhhcccccCCeEEeCCCCc
Confidence             6777888889999999999998

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.90  E-value=1e-24  Score=203.87  Aligned_cols=44  Identities=20%  Similarity=0.228  Sum_probs=19.6

Q ss_pred             cCcccc--CCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCc
Q 036300          108 IPTSID--YLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQ  151 (269)
Q Consensus       108 ~p~~l~--~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~  151 (269)
                      +|+.++  ++++|++|++++|.+.+.+|..++++++|++|++++|+
T Consensus       239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~  284 (636)
T 4eco_A          239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR  284 (636)
T ss_dssp             TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred             CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC
Confidence            444444  44444444444444444444444444444444444444

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.89  E-value=8.5e-23  Score=176.22  Aligned_cols=182  Identities=16%  Similarity=0.191  Sum_probs=150.5

Q ss_pred             CcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCc
Q 036300           78 PIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIP  157 (269)
Q Consensus        78 ~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p  157 (269)
                      +..+|..+    .++|++|++++| .+.+..|..|..+++|++|++++|.+++..|..+.++++|++|++++|.++ .+|
T Consensus        45 l~~ip~~~----~~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~  118 (332)
T 2ft3_A           45 LKAVPKEI----SPDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIP  118 (332)
T ss_dssp             CSSCCSCC----CTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCC
T ss_pred             ccccCCCC----CCCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccC
Confidence            34566554    378999999999 788877889999999999999999999888899999999999999999999 777


Q ss_pred             cccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCC--cCchhhcCC--------------------CCCC
Q 036300          158 ASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQE--KIPKEIGNL--------------------HNVT  215 (269)
Q Consensus       158 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~--~~p~~~~~l--------------------~~L~  215 (269)
                      ..+.  ++|++|++++|.+++..+..+..+++|+.|++++|.++.  ..|..+..+                    ++|+
T Consensus       119 ~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~  196 (332)
T 2ft3_A          119 PNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLN  196 (332)
T ss_dssp             SSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCS
T ss_pred             cccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCC
Confidence            6655  899999999999997767779999999999999999853  444444433                    4677


Q ss_pred             EEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300          216 FLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       216 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l  269 (269)
                      +|++++|.+++..+..+..+++|++|++++|.+  ..++...+..+++|++|++
T Consensus       197 ~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l--~~~~~~~~~~l~~L~~L~L  248 (332)
T 2ft3_A          197 ELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI--RMIENGSLSFLPTLRELHL  248 (332)
T ss_dssp             CCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCC--CCCCTTGGGGCTTCCEEEC
T ss_pred             EEECCCCcCCccCHHHhcCCCCCCEEECCCCcC--CcCChhHhhCCCCCCEEEC
Confidence            777777777777777888889999999999998  4454447888899988875

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.89  E-value=2e-23  Score=171.98  Aligned_cols=181  Identities=15%  Similarity=0.112  Sum_probs=153.8

Q ss_pred             CcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCC-CCCCCCCCCCCCCCCCEEEccC-CcCCCC
Q 036300           78 PIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKG-LTGKLPIEPSKLVNLRRLALAG-NQINGQ  155 (269)
Q Consensus        78 ~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~L~~-n~l~~~  155 (269)
                      +.++|. +    .++|++|++++| .+.+..+..|..+++|++|++++|. +++..+..|.++++|++|++++ |.++..
T Consensus        23 l~~ip~-~----~~~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i   96 (239)
T 2xwt_C           23 IQRIPS-L----PPSTQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI   96 (239)
T ss_dssp             CSSCCC-C----CTTCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE
T ss_pred             ccccCC-C----CCcccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc
Confidence            345555 2    468999999999 7887777789999999999999997 8866666899999999999999 999965


Q ss_pred             CccccCCCCCCCEEEccCCcCCchhhhhhcCcccCC---EEeCcCC-cCCCcCchhhcCCCCCC-EEEccCCccCCcchh
Q 036300          156 IPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLL---KLDLSYN-NLQEKIPKEIGNLHNVT-FLDLRSNNFLGGLVG  230 (269)
Q Consensus       156 ~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~---~L~ls~n-~l~~~~p~~~~~l~~L~-~L~L~~N~l~~~~~~  230 (269)
                      .+..|..+++|++|++++|.+++ +|. +..+++|+   +|++++| ++++..+..|..+++|+ +|++++|+++...+.
T Consensus        97 ~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~  174 (239)
T 2xwt_C           97 DPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGY  174 (239)
T ss_dssp             CTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTT
T ss_pred             CHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHh
Confidence            56788999999999999999985 665 88888888   9999999 99876667799999999 999999999944444


Q ss_pred             hhhcCCCCCeEEccCCC-CCCCCCCccccccC-cCCceecC
Q 036300          231 SIEEMVSLKEMVVSNNP-IFGGGLNGIRWENL-QNLEIWIF  269 (269)
Q Consensus       231 ~~~~l~~L~~L~l~~N~-l~~~~~p~~~~~~l-~~L~~L~l  269 (269)
                      .+.. ++|++|++++|+ +  ..++...+..+ ++|+.|++
T Consensus       175 ~~~~-~~L~~L~L~~n~~l--~~i~~~~~~~l~~~L~~L~l  212 (239)
T 2xwt_C          175 AFNG-TKLDAVYLNKNKYL--TVIDKDAFGGVYSGPSLLDV  212 (239)
T ss_dssp             TTTT-CEEEEEECTTCTTC--CEECTTTTTTCSBCCSEEEC
T ss_pred             hcCC-CCCCEEEcCCCCCc--ccCCHHHhhccccCCcEEEC
Confidence            4554 899999999995 8  57776688899 99999875

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.89  E-value=7.7e-23  Score=196.90  Aligned_cols=117  Identities=26%  Similarity=0.301  Sum_probs=86.7

Q ss_pred             cccccccccCCCCC-CCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCC--CCCC
Q 036300           63 LVCSQCKIFKPPLQ-SPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIE--PSKL  139 (269)
Q Consensus        63 ~~~~~l~~~~~~~~-~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~--~~~l  139 (269)
                      ..+.++..+..+.+ ..+.+++..|.++ ++|++|+|++| .+.+..|..|..+++|++|++++|.+++..|..  +.++
T Consensus        45 ~~l~~L~~LdLs~n~~~~~i~~~~f~~L-~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L  122 (844)
T 3j0a_A           45 PFLEQLQLLELGSQYTPLTIDKEAFRNL-PNLRILDLGSS-KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL  122 (844)
T ss_dssp             SSCCSCSEEEECTTCCCCEECTTTTSSC-TTCCEEECTTC-CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSC
T ss_pred             cccccCeEEeCCCCCCccccCHHHhcCC-CCCCEEECCCC-cCcccCHhHccCCcccCEeeCcCCCCCcccccCcccccc
Confidence            34455555555544 6677866666665 88888888888 788877888888888888888888888766554  7888


Q ss_pred             CCCCEEEccCCcCCCCCc-cccCCCCCCCEEEccCCcCCchhh
Q 036300          140 VNLRRLALAGNQINGQIP-ASIGGLTKLLIFDLSRNNLSGSML  181 (269)
Q Consensus       140 ~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~l~~n~l~~~~~  181 (269)
                      ++|++|++++|.+++..+ ..|.++++|++|++++|.+++..+
T Consensus       123 ~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~  165 (844)
T 3j0a_A          123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE  165 (844)
T ss_dssp             SSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS
T ss_pred             CCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH
Confidence            888888888888875544 467788888888888887755433

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.89  E-value=2.6e-23  Score=178.14  Aligned_cols=194  Identities=16%  Similarity=0.126  Sum_probs=158.0

Q ss_pred             ccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCc-eeccCcccc-------CCCCCCEEEcccCCCCCCCCCCC--C
Q 036300           68 CKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRL-IGTIPTSID-------YLKNLQSLVLLEKGLTGKLPIEP--S  137 (269)
Q Consensus        68 l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l-~~~~p~~l~-------~l~~L~~L~L~~n~l~~~~p~~~--~  137 (269)
                      +..+....+.. .+|..+..    .|++|++++| .+ ...+|..+.       .+++|++|++++|.+++.+|..+  .
T Consensus        45 L~~l~l~~n~l-~~p~~~~~----~L~~L~L~~n-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  118 (312)
T 1wwl_A           45 LEYLLKRVDTE-ADLGQFTD----IIKSLSLKRL-TVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA  118 (312)
T ss_dssp             CTTHHHHCCTT-CCCHHHHH----HHHHCCCCEE-EEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred             ceeEeeccccc-ccHHHHHH----HHhhcccccc-cccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence            33333333445 78887644    3899999999 67 456776665       78999999999999999999886  8


Q ss_pred             CCCCCCEEEccCCcCCCCCccccCCC-----CCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCc--Cchhh--
Q 036300          138 KLVNLRRLALAGNQINGQIPASIGGL-----TKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEK--IPKEI--  208 (269)
Q Consensus       138 ~l~~L~~L~L~~n~l~~~~p~~l~~l-----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~--~p~~~--  208 (269)
                      .+++|++|++++|.+++. |..+..+     ++|++|++++|++++..+..++.+++|++|++++|++.+.  .|..+  
T Consensus       119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~  197 (312)
T 1wwl_A          119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP  197 (312)
T ss_dssp             CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred             cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence            999999999999999966 8777766     8999999999999988889999999999999999998765  34444  


Q ss_pred             cCCCCCCEEEccCCccCC---cchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300          209 GNLHNVTFLDLRSNNFLG---GLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       209 ~~l~~L~~L~L~~N~l~~---~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l  269 (269)
                      ..+++|++|++++|++++   .....+..+++|++|++++|.+ .+..|...+..+++|++|++
T Consensus       198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~~l~~L~~L~L  260 (312)
T 1wwl_A          198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSL-RDAAGAPSCDWPSQLNSLNL  260 (312)
T ss_dssp             TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCC-CSSCCCSCCCCCTTCCEEEC
T ss_pred             ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcC-CcccchhhhhhcCCCCEEEC
Confidence            789999999999999984   2224556889999999999999 66555446777899998875

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.89  E-value=2.9e-22  Score=184.60  Aligned_cols=106  Identities=22%  Similarity=0.252  Sum_probs=65.5

Q ss_pred             ccccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEE
Q 036300           66 SQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRL  145 (269)
Q Consensus        66 ~~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  145 (269)
                      .+++.+....+.+..+|...|..+ ++|++|++++| .+.+..|..|..+++|++|++++|.++ .+|..  .+++|++|
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~l-~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L  126 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISFL-SELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHL  126 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTTC-TTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEE
T ss_pred             CCcCEEECCCCCccccChhhhccC-CCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEE
Confidence            445555555566666666555554 67777777777 566666666777777777777777666 45544  56666666


Q ss_pred             EccCCcCCC-CCccccCCCCCCCEEEccCCcC
Q 036300          146 ALAGNQING-QIPASIGGLTKLLIFDLSRNNL  176 (269)
Q Consensus       146 ~L~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l  176 (269)
                      ++++|.+++ .+|..|.++++|++|++++|.+
T Consensus       127 ~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l  158 (562)
T 3a79_B          127 DLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF  158 (562)
T ss_dssp             ECCSSCCSBCCCCGGGGGCTTCCEEEEECSBC
T ss_pred             ECCCCCccccCchHhhcccCcccEEecCCCcc
Confidence            666666653 2335555566665555555544

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.89  E-value=2.3e-22  Score=164.81  Aligned_cols=145  Identities=22%  Similarity=0.181  Sum_probs=127.7

Q ss_pred             cccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcc
Q 036300           79 IEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPA  158 (269)
Q Consensus        79 ~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~  158 (269)
                      +++|..+    .++|++|++++| .+.+..|..|..+++|++|+|++|+++...+..|..+++|++|+|++|.+++..+.
T Consensus        32 ~~ip~~~----~~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~  106 (229)
T 3e6j_A           32 ASVPAGI----PTNAQILYLHDN-QITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSA  106 (229)
T ss_dssp             SSCCSCC----CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             CccCCCC----CCCCCEEEcCCC-ccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChh
Confidence            4455543    478999999999 79888888999999999999999999865556789999999999999999966666


Q ss_pred             ccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcch
Q 036300          159 SIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLV  229 (269)
Q Consensus       159 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~  229 (269)
                      .|..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..+..+++|+.|++++|.+....+
T Consensus       107 ~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          107 VFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             TTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             HhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            7899999999999999999 778889999999999999999997666778999999999999999986543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.89  E-value=1.9e-22  Score=183.97  Aligned_cols=84  Identities=21%  Similarity=0.244  Sum_probs=66.8

Q ss_pred             cCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCC--cchhhhhcCCCCCeEEccCCCCCCCCCCccccccCc
Q 036300          185 GKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLG--GLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQ  262 (269)
Q Consensus       185 ~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~  262 (269)
                      ..+++|++|++++|++++..|..+..+++|++|++++|++++  .+|..+..+++|++|++++|.+ .+.+|...+..++
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l-~~~l~~~~~~~l~  399 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSV-SYDEKKGDCSWTK  399 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCC-BCCGGGCSCCCCT
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcC-CcccccchhccCc
Confidence            456778888888888887778888888888888888888886  5567788888888899988888 5557765677778


Q ss_pred             CCceecC
Q 036300          263 NLEIWIF  269 (269)
Q Consensus       263 ~L~~L~l  269 (269)
                      +|+.|++
T Consensus       400 ~L~~L~L  406 (520)
T 2z7x_B          400 SLLSLNM  406 (520)
T ss_dssp             TCCEEEC
T ss_pred             cCCEEEC
Confidence            8887764

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.89  E-value=3.3e-22  Score=187.95  Aligned_cols=187  Identities=26%  Similarity=0.265  Sum_probs=86.5

Q ss_pred             CcccCchhHHhhcCCccEEEccCCCCceeccC-ccccCCCCCCEEEcccCCCCCCC------------------------
Q 036300           78 PIEIPSSNWQKLANSLDSLEFGSNPRLIGTIP-TSIDYLKNLQSLVLLEKGLTGKL------------------------  132 (269)
Q Consensus        78 ~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~------------------------  132 (269)
                      +..+++..|..+ ++|++|++++| .+.+.+| ..+..+++|++|++++|.+.+..                        
T Consensus       393 l~~~~~~~~~~l-~~L~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~  470 (680)
T 1ziw_A          393 ISKIESDAFSWL-GHLEVLDLGLN-EIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVD  470 (680)
T ss_dssp             CCEECTTTTTTC-TTCCEEECCSS-CCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTT
T ss_pred             CCeEChhhhhCC-CCCCEEeCCCC-cCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccc
Confidence            333333333333 55666666655 4554444 34555555555555555554433                        


Q ss_pred             --CCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhh--------hhhcCcccCCEEeCcCCcCCC
Q 036300          133 --PIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSML--------LTLGKLARLLKLDLSYNNLQE  202 (269)
Q Consensus       133 --p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~--------~~~~~l~~L~~L~ls~n~l~~  202 (269)
                        |..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+        ..+..+++|+.|++++|+++.
T Consensus       471 ~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~  550 (680)
T 1ziw_A          471 SSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE  550 (680)
T ss_dssp             CSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCC
T ss_pred             cCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCC
Confidence              3444444444444444444443333344444445555555544442211        113444455555555555543


Q ss_pred             cCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccc-cCcCCceec
Q 036300          203 KIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWE-NLQNLEIWI  268 (269)
Q Consensus       203 ~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~-~l~~L~~L~  268 (269)
                      ..+..|..+++|++|++++|++++..+..|..+++|++|++++|++  ..++...+. .+++|+.|+
T Consensus       551 i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l--~~~~~~~~~~~~~~L~~l~  615 (680)
T 1ziw_A          551 IPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLI--TSVEKKVFGPAFRNLTELD  615 (680)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCC--CBCCHHHHHHHHTTCSEEE
T ss_pred             CCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcC--CccChhHhcccccccCEEE
Confidence            2223344555555555555555544444444455555555555555  223322333 344444443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.88  E-value=1.1e-22  Score=188.93  Aligned_cols=170  Identities=25%  Similarity=0.266  Sum_probs=144.3

Q ss_pred             cccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcc
Q 036300           79 IEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPA  158 (269)
Q Consensus        79 ~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~  158 (269)
                      .+||..+    ++++++|||++| .+.+..+..|..+++|++|+|++|++++..+.+|.++++|++|+|++|++++..+.
T Consensus        44 ~~vP~~l----p~~~~~LdLs~N-~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~  118 (635)
T 4g8a_A           44 YKIPDNL----PFSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG  118 (635)
T ss_dssp             SSCCSSS----CTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGG
T ss_pred             CccCCCC----CcCCCEEEeeCC-CCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHH
Confidence            4556543    578999999999 78887777899999999999999999977777899999999999999999965567


Q ss_pred             ccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCC-cCchhhcCCCCCCEEEccCCccCCcchhhhhcCCC
Q 036300          159 SIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQE-KIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVS  237 (269)
Q Consensus       159 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  237 (269)
                      .|.++++|++|++++|++++..+..|+.+++|++|++++|++++ ..|..++.+++|++|++++|++++..+..+..+.+
T Consensus       119 ~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~  198 (635)
T 4g8a_A          119 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ  198 (635)
T ss_dssp             GGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHT
T ss_pred             HhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhh
Confidence            78999999999999999997666779999999999999999976 46788889999999999999999888877766544


Q ss_pred             C----CeEEccCCCCCCCCCCc
Q 036300          238 L----KEMVVSNNPIFGGGLNG  255 (269)
Q Consensus       238 L----~~L~l~~N~l~~~~~p~  255 (269)
                      +    ..++++.|.+  ..++.
T Consensus       199 l~~~~~~~~ls~n~l--~~i~~  218 (635)
T 4g8a_A          199 MPLLNLSLDLSLNPM--NFIQP  218 (635)
T ss_dssp             CTTCCCEEECTTCCC--CEECT
T ss_pred             hhhhhhhhhcccCcc--cccCc
Confidence            4    4688888988  44443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.88  E-value=1.3e-22  Score=183.90  Aligned_cols=193  Identities=20%  Similarity=0.177  Sum_probs=143.5

Q ss_pred             cccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCC------------
Q 036300           67 QCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPI------------  134 (269)
Q Consensus        67 ~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~------------  134 (269)
                      ++..+....+.+..+|+..|..+ ++|++|+|++| .+.+..|  +..+++|++|++++|.+++..+.            
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~  110 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPF-TKLELLNLSSN-VLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNN  110 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTC-TTCCEEECTTS-CCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCC-CCCCEEEeeCC-CCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCc
Confidence            45555555566666666555555 77888888877 6666544  67777777777777766532110            


Q ss_pred             ----CCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhc-CcccCCEEeCcCCcCCCcCchhhc
Q 036300          135 ----EPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLG-KLARLLKLDLSYNNLQEKIPKEIG  209 (269)
Q Consensus       135 ----~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~ls~n~l~~~~p~~~~  209 (269)
                          ....+++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+. .+++|+.|++++|.+++. |. ..
T Consensus       111 l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~  188 (487)
T 3oja_A          111 ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QV  188 (487)
T ss_dssp             CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CC
T ss_pred             CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cc
Confidence                012356788888888888877777888888999999999999887777775 688999999999998864 33 34


Q ss_pred             CCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300          210 NLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       210 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l  269 (269)
                      .+++|++|+|++|.+++.. ..+..+++|+.|++++|.+  ..+|. .+..+++|+.|++
T Consensus       189 ~l~~L~~L~Ls~N~l~~~~-~~~~~l~~L~~L~Ls~N~l--~~lp~-~l~~l~~L~~L~l  244 (487)
T 3oja_A          189 VFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKL--VLIEK-ALRFSQNLEHFDL  244 (487)
T ss_dssp             CCTTCCEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCC--CEECT-TCCCCTTCCEEEC
T ss_pred             cCCCCCEEECCCCCCCCCC-HhHcCCCCccEEEecCCcC--cccch-hhccCCCCCEEEc
Confidence            6889999999999998644 4588899999999999999  45775 5778888988875

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.88  E-value=3.6e-22  Score=192.24  Aligned_cols=181  Identities=23%  Similarity=0.237  Sum_probs=94.0

Q ss_pred             cCCCCCCCcccCchhHHhhcCCccEEEccCCCCceecc-CccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccC
Q 036300           71 FKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTI-PTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAG  149 (269)
Q Consensus        71 ~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~  149 (269)
                      +..+.+.+..+++..|..+ ++|++|++++| ...+.+ |..|..+++|++|+|++|.+.+..|..|.++++|++|++++
T Consensus        29 LdLs~N~i~~i~~~~~~~l-~~L~~LdLs~n-~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~  106 (844)
T 3j0a_A           29 LLLSFNYIRTVTASSFPFL-EQLQLLELGSQ-YTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYF  106 (844)
T ss_dssp             EEEESCCCCEECSSSCSSC-CSCSEEEECTT-CCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTT
T ss_pred             EECCCCcCCccChhHCccc-ccCeEEeCCCC-CCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcC
Confidence            3333344444443333443 55555555555 333333 44555555555555555555555555555555555555555


Q ss_pred             CcCCCCCccc--cCCCCCCCEEEccCCcCCchhh-hhhcCcccCCEEeCcCCcCCCcCchhhcCC--CCCCEEEccCCcc
Q 036300          150 NQINGQIPAS--IGGLTKLLIFDLSRNNLSGSML-LTLGKLARLLKLDLSYNNLQEKIPKEIGNL--HNVTFLDLRSNNF  224 (269)
Q Consensus       150 n~l~~~~p~~--l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l--~~L~~L~L~~N~l  224 (269)
                      |.+++.+|..  +..+++|++|++++|.+++..+ ..|+++++|++|++++|.+++..+..+..+  ++|+.|++++|.+
T Consensus       107 n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l  186 (844)
T 3j0a_A          107 CGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSL  186 (844)
T ss_dssp             CCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBS
T ss_pred             CCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCcc
Confidence            5555444433  5555555555555555554332 345555555555555555555555555444  5555555555555


Q ss_pred             CCcchhhhhcCCC------CCeEEccCCCCCCCCCC
Q 036300          225 LGGLVGSIEEMVS------LKEMVVSNNPIFGGGLN  254 (269)
Q Consensus       225 ~~~~~~~~~~l~~------L~~L~l~~N~l~~~~~p  254 (269)
                      .+..|..+..+.+      |++|++++|.+ .+.++
T Consensus       187 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l-~~~~~  221 (844)
T 3j0a_A          187 YSRVSVDWGKCMNPFRNMVLEILDVSGNGW-TVDIT  221 (844)
T ss_dssp             CCCCCCCCCSSSCTTTTCCBSEEBCSSCCS-STTTT
T ss_pred             ccccccchhhcCCccccCceeEEecCCCcC-chhHH
Confidence            5544444443333      55666666655 44444

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.88  E-value=1.2e-21  Score=167.41  Aligned_cols=163  Identities=23%  Similarity=0.330  Sum_probs=121.1

Q ss_pred             cCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEE
Q 036300           90 ANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIF  169 (269)
Q Consensus        90 ~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  169 (269)
                      +++|++|++++| .+.+. +. +..+++|++|++++|.+++ ++ .+..+++|++|++++|.+++ ++. +..+++|++|
T Consensus        62 l~~L~~L~L~~n-~i~~~-~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L  134 (308)
T 1h6u_A           62 LNNLIGLELKDN-QITDL-AP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVL  134 (308)
T ss_dssp             CTTCCEEECCSS-CCCCC-GG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEE
T ss_pred             cCCCCEEEccCC-cCCCC-hh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEE
Confidence            378888888888 56553 33 7788888888888888774 33 57788888888888888874 443 7788888888


Q ss_pred             EccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCC
Q 036300          170 DLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIF  249 (269)
Q Consensus       170 ~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  249 (269)
                      ++++|.+++..+  +..+++|+.|++++|++++ ++. +..+++|+.|++++|.+++..+  +..+++|++|++++|++ 
T Consensus       135 ~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l-  207 (308)
T 1h6u_A          135 YLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQI-  207 (308)
T ss_dssp             ECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCC-
T ss_pred             ECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCcc-
Confidence            888888875433  7777888888888888875 343 7788888888888888875443  77788888888888888 


Q ss_pred             CCCCCccccccCcCCceecC
Q 036300          250 GGGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       250 ~~~~p~~~~~~l~~L~~L~l  269 (269)
                       ..++  .+..+++|+.|++
T Consensus       208 -~~~~--~l~~l~~L~~L~l  224 (308)
T 1h6u_A          208 -SDVS--PLANTSNLFIVTL  224 (308)
T ss_dssp             -CBCG--GGTTCTTCCEEEE
T ss_pred             -Cccc--cccCCCCCCEEEc
Confidence             4444  2677888887764

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.88  E-value=5.1e-23  Score=197.38  Aligned_cols=179  Identities=22%  Similarity=0.249  Sum_probs=151.9

Q ss_pred             cCchhHHhhcCCccEEEccCCCCcee-----------------ccCcccc--CCCCCCEEEcccCCCCCCCCCCCCCCCC
Q 036300           81 IPSSNWQKLANSLDSLEFGSNPRLIG-----------------TIPTSID--YLKNLQSLVLLEKGLTGKLPIEPSKLVN  141 (269)
Q Consensus        81 lp~~~~~~l~~~L~~L~l~~n~~l~~-----------------~~p~~l~--~l~~L~~L~L~~n~l~~~~p~~~~~l~~  141 (269)
                      ||..+ .++ ++|++|+|++| .+.+                 .+|+.++  .+++|++|+|++|.+.+.+|..++++++
T Consensus       440 IP~~l-~~L-~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~  516 (876)
T 4ecn_A          440 ISKAI-QRL-TKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPE  516 (876)
T ss_dssp             ECGGG-GGC-TTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSS
T ss_pred             hhHHH-hcC-CCCCEEECcCC-cCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCC
Confidence            89875 444 99999999999 7888                 3898887  9999999999999999999999999999


Q ss_pred             CCEEEccCCc-CCC-CCccccCCC-------CCCCEEEccCCcCCchhhh--hhcCcccCCEEeCcCCcCCCcCchhhcC
Q 036300          142 LRRLALAGNQ-ING-QIPASIGGL-------TKLLIFDLSRNNLSGSMLL--TLGKLARLLKLDLSYNNLQEKIPKEIGN  210 (269)
Q Consensus       142 L~~L~L~~n~-l~~-~~p~~l~~l-------~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~ls~n~l~~~~p~~~~~  210 (269)
                      |++|++++|+ +++ .+|..+..+       ++|++|++++|.++ .+|.  .+..+++|+.|++++|+++ .+| .++.
T Consensus       517 L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~  593 (876)
T 4ecn_A          517 LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGT  593 (876)
T ss_dssp             CCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCT
T ss_pred             CCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcC
Confidence            9999999998 887 788765544       49999999999998 7887  8999999999999999998 678 7889


Q ss_pred             CCCCCEEEccCCccCCcchhhhhcCCC-CCeEEccCCCCCCCCCCccccccCcC--CceecC
Q 036300          211 LHNVTFLDLRSNNFLGGLVGSIEEMVS-LKEMVVSNNPIFGGGLNGIRWENLQN--LEIWIF  269 (269)
Q Consensus       211 l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~l~~N~l~~~~~p~~~~~~l~~--L~~L~l  269 (269)
                      +++|+.|++++|.++ .+|..+..+++ |++|++++|.+  ..+|. .+..++.  |+.|++
T Consensus       594 L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L--~~lp~-~~~~~~~~~L~~L~L  651 (876)
T 4ecn_A          594 NVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKL--KYIPN-IFNAKSVYVMGSVDF  651 (876)
T ss_dssp             TSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCC--CSCCS-CCCTTCSSCEEEEEC
T ss_pred             CCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCC--CcCch-hhhccccCCCCEEEC
Confidence            999999999999998 78888888888 99999999998  37774 4544433  666553

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.88  E-value=2.7e-22  Score=184.53  Aligned_cols=177  Identities=20%  Similarity=0.230  Sum_probs=121.5

Q ss_pred             cccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEE
Q 036300           67 QCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLA  146 (269)
Q Consensus        67 ~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  146 (269)
                      .++.+..+.+.+..++...|.++ ++|++|++++| .+.+..+..|..+++|++|++++|.+++..|..|.++++|++|+
T Consensus        29 ~l~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (570)
T 2z63_A           29 STKNLDLSFNPLRHLGSYSFFSF-PELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  106 (570)
T ss_dssp             SCCEEECCSCCCCEECTTTTTTC-SSCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             cccEEEccCCccCccChhHhhCC-CCceEEECCCC-cCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence            34445555555666666555554 77777777777 56666666677777777777777777766666777777777777


Q ss_pred             ccCCcCCCCCccccCCCCCCCEEEccCCcCCc-hhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCC----CEEEccC
Q 036300          147 LAGNQINGQIPASIGGLTKLLIFDLSRNNLSG-SMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNV----TFLDLRS  221 (269)
Q Consensus       147 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L----~~L~L~~  221 (269)
                      +++|.+++..+..+..+++|++|++++|.+++ .+|..++++++|++|++++|++++..+..++.+++|    +.|++++
T Consensus       107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~  186 (570)
T 2z63_A          107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL  186 (570)
T ss_dssp             CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred             ccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCC
Confidence            77777774433457777777777777777765 356777777777777777777776666666666666    6777777


Q ss_pred             CccCCcchhhhhcCCCCCeEEccCC
Q 036300          222 NNFLGGLVGSIEEMVSLKEMVVSNN  246 (269)
Q Consensus       222 N~l~~~~~~~~~~l~~L~~L~l~~N  246 (269)
                      |.+++..+..+... +|++|++++|
T Consensus       187 n~l~~~~~~~~~~~-~L~~L~l~~n  210 (570)
T 2z63_A          187 NPMNFIQPGAFKEI-RLHKLTLRNN  210 (570)
T ss_dssp             CCCCEECTTTTTTC-EEEEEEEESC
T ss_pred             CCceecCHHHhccC-cceeEecccc
Confidence            77776666555544 5677766666

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.88  E-value=3.3e-22  Score=171.56  Aligned_cols=195  Identities=20%  Similarity=0.183  Sum_probs=146.0

Q ss_pred             cccccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCC-C--------
Q 036300           65 CSQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPI-E--------  135 (269)
Q Consensus        65 ~~~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~--------  135 (269)
                      +.++..+....+.+..++...|..+ ++|++|++++| .+.+..+  +..+++|++|++++|.+++..+. .        
T Consensus        33 ~~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~n-~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~  108 (317)
T 3o53_A           33 AWNVKELDLSGNPLSQISAADLAPF-TKLELLNLSSN-VLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAAN  108 (317)
T ss_dssp             GGGCSEEECTTSCCCCCCHHHHTTC-TTCCEEECTTS-CCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECCS
T ss_pred             CCCCCEEECcCCccCcCCHHHhhCC-CcCCEEECCCC-cCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEECCC
Confidence            3455666666667777776666665 88888888888 6766543  77888888888888776632110 0        


Q ss_pred             -------CCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhh-cCcccCCEEeCcCCcCCCcCchh
Q 036300          136 -------PSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTL-GKLARLLKLDLSYNNLQEKIPKE  207 (269)
Q Consensus       136 -------~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~ls~n~l~~~~p~~  207 (269)
                             ...+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+ ..+++|++|++++|.+++. +. 
T Consensus       109 n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-  186 (317)
T 3o53_A          109 NNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-  186 (317)
T ss_dssp             SCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-
T ss_pred             CccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-
Confidence                   1235678888888888886666678888899999999999887766666 4678899999999988854 33 


Q ss_pred             hcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300          208 IGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       208 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l  269 (269)
                      ...+++|++|++++|++++ +|..+..+++|++|++++|.+  ..+|. .+..+++|+.|++
T Consensus       187 ~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l--~~l~~-~~~~l~~L~~L~l  244 (317)
T 3o53_A          187 QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKL--VLIEK-ALRFSQNLEHFDL  244 (317)
T ss_dssp             CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCC--CEECT-TCCCCTTCCEEEC
T ss_pred             ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcc--cchhh-HhhcCCCCCEEEc
Confidence            3458899999999999985 445588899999999999999  46775 6788899998875

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.88  E-value=5e-22  Score=173.51  Aligned_cols=166  Identities=23%  Similarity=0.219  Sum_probs=144.3

Q ss_pred             CcccCchhHHhhcCCccEEEccCCCCceeccCcccc-CCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCC
Q 036300           78 PIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSID-YLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQI  156 (269)
Q Consensus        78 ~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~  156 (269)
                      +..+|..+    .+.++.|+|++| .+.+..+..+. .+++|++|+|++|.+++..+..|.++++|++|+|++|+++...
T Consensus        30 l~~iP~~~----~~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~  104 (361)
T 2xot_A           30 LPNVPQSL----PSYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLD  104 (361)
T ss_dssp             CSSCCSSC----CTTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             cCccCccC----CCCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCC
Confidence            44566544    467999999999 78887777787 9999999999999999877788999999999999999999666


Q ss_pred             ccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhh---cCCCCCCEEEccCCccCCcchhhhh
Q 036300          157 PASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEI---GNLHNVTFLDLRSNNFLGGLVGSIE  233 (269)
Q Consensus       157 p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~---~~l~~L~~L~L~~N~l~~~~~~~~~  233 (269)
                      +..|..+++|++|++++|.+++..+..|..+++|+.|++++|++++..+..+   ..+++|+.|+|++|+|++..+..+.
T Consensus       105 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~  184 (361)
T 2xot_A          105 EFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQ  184 (361)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHH
T ss_pred             HHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhh
Confidence            6788999999999999999998888899999999999999999997444444   5789999999999999987778888


Q ss_pred             cCCC--CCeEEccCCCC
Q 036300          234 EMVS--LKEMVVSNNPI  248 (269)
Q Consensus       234 ~l~~--L~~L~l~~N~l  248 (269)
                      .++.  ++.|++++|++
T Consensus       185 ~l~~~~l~~l~l~~N~~  201 (361)
T 2xot_A          185 KLPAWVKNGLYLHNNPL  201 (361)
T ss_dssp             HSCHHHHTTEECCSSCE
T ss_pred             hccHhhcceEEecCCCc
Confidence            8887  48999999998

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.88  E-value=3.9e-22  Score=183.48  Aligned_cols=182  Identities=24%  Similarity=0.257  Sum_probs=157.1

Q ss_pred             cccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcc
Q 036300           79 IEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPA  158 (269)
Q Consensus        79 ~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~  158 (269)
                      .+||..+    .+++++|++++| .+.+..+..|..+++|++|++++|.+++..+..|.++++|++|++++|.+++..|.
T Consensus        20 ~~ip~~l----~~~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~   94 (570)
T 2z63_A           20 YKIPDNL----PFSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG   94 (570)
T ss_dssp             SSCCSSS----CSSCCEEECCSC-CCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred             cccCCCc----cccccEEEccCC-ccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHh
Confidence            4456543    478999999999 78888788999999999999999999987788899999999999999999977778


Q ss_pred             ccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCC-cCchhhcCCCCCCEEEccCCccCCcchhhhhcCCC
Q 036300          159 SIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQE-KIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVS  237 (269)
Q Consensus       159 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  237 (269)
                      .|..+++|++|++++|.+++..+..++.+++|++|++++|.+.+ .+|..++++++|++|++++|.+++..+..++.+++
T Consensus        95 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  174 (570)
T 2z63_A           95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ  174 (570)
T ss_dssp             TTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHT
T ss_pred             hhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhc
Confidence            99999999999999999986655578999999999999999987 47899999999999999999999888888888888


Q ss_pred             C----CeEEccCCCCCCCCCCccccccCcCCceec
Q 036300          238 L----KEMVVSNNPIFGGGLNGIRWENLQNLEIWI  268 (269)
Q Consensus       238 L----~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~  268 (269)
                      |    +.+++++|.+  ..++...+..+ +|+.|+
T Consensus       175 L~~~~~~L~l~~n~l--~~~~~~~~~~~-~L~~L~  206 (570)
T 2z63_A          175 MPLLNLSLDLSLNPM--NFIQPGAFKEI-RLHKLT  206 (570)
T ss_dssp             CTTCCCEEECTTCCC--CEECTTTTTTC-EEEEEE
T ss_pred             cchhhhhcccCCCCc--eecCHHHhccC-cceeEe
Confidence            8    8999999999  44444455443 566553

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.87  E-value=1.9e-21  Score=177.37  Aligned_cols=196  Identities=19%  Similarity=0.220  Sum_probs=154.8

Q ss_pred             cccccccCCCCCCCcccCchhHHhhc--CCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCC
Q 036300           65 CSQCKIFKPPLQSPIEIPSSNWQKLA--NSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNL  142 (269)
Q Consensus        65 ~~~l~~~~~~~~~~~~lp~~~~~~l~--~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L  142 (269)
                      +..+..+....+.. .+|...+..+.  .+|+.|++++| .+....  .+..+++|++|++++|.+++..|..+..+++|
T Consensus       275 l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n-~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  350 (520)
T 2z7x_B          275 LKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGT-RMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTEL  350 (520)
T ss_dssp             CCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESS-CCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSC
T ss_pred             CceeEeccccccce-ecchhhhhcccccCceeEEEcCCC-cccccc--chhhCCcccEEEeECCccChhhhhhhccCCCC
Confidence            33333333333444 67743332221  45899999998 554421  12688999999999999998889999999999


Q ss_pred             CEEEccCCcCCC--CCccccCCCCCCCEEEccCCcCCchhhh-hhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEc
Q 036300          143 RRLALAGNQING--QIPASIGGLTKLLIFDLSRNNLSGSMLL-TLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDL  219 (269)
Q Consensus       143 ~~L~L~~n~l~~--~~p~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L  219 (269)
                      ++|++++|++++  .+|..+..+++|++|++++|.+++.+|. .+..+++|++|++++|++++..|..+.  ++|++|++
T Consensus       351 ~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~L  428 (520)
T 2z7x_B          351 ETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDL  428 (520)
T ss_dssp             CEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEEC
T ss_pred             CEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEEC
Confidence            999999999985  4567789999999999999999975665 478889999999999999887776554  78999999


Q ss_pred             cCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300          220 RSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       220 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l  269 (269)
                      ++|+++ .+|..+..+++|++|++++|++  ..+|...+..+++|++|++
T Consensus       429 s~N~l~-~ip~~~~~l~~L~~L~L~~N~l--~~l~~~~~~~l~~L~~L~l  475 (520)
T 2z7x_B          429 HSNKIK-SIPKQVVKLEALQELNVASNQL--KSVPDGIFDRLTSLQKIWL  475 (520)
T ss_dssp             CSSCCC-CCCGGGGGCTTCCEEECCSSCC--CCCCTTTTTTCTTCCEEEC
T ss_pred             CCCccc-ccchhhhcCCCCCEEECCCCcC--CccCHHHhccCCcccEEEC
Confidence            999998 7777777999999999999999  4688756888999998875

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.87  E-value=2.4e-22  Score=184.29  Aligned_cols=187  Identities=17%  Similarity=0.168  Sum_probs=142.8

Q ss_pred             CCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCC
Q 036300           76 QSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQ  155 (269)
Q Consensus        76 ~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~  155 (269)
                      +.+.+||..+    .++|++|++++| .+.+..|..|..+++|++|++++|++++..|..|.++++|++|++++|.+++.
T Consensus        15 ~~l~~ip~~~----~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~   89 (549)
T 2z81_A           15 RSFTSIPSGL----TAAMKSLDLSFN-KITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL   89 (549)
T ss_dssp             SCCSSCCSCC----CTTCCEEECCSS-CCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSC
T ss_pred             CccccccccC----CCCccEEECcCC-ccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCcc
Confidence            4455677654    367888888888 67777777788888888888888888877777888888888888888888866


Q ss_pred             CccccCCCCCCCEEEccCCcCCc-hhhhhhcCcccCCEEeCcCCcCCCcCc-hhhcCCCCCCEEEccCCccCCcchhhhh
Q 036300          156 IPASIGGLTKLLIFDLSRNNLSG-SMLLTLGKLARLLKLDLSYNNLQEKIP-KEIGNLHNVTFLDLRSNNFLGGLVGSIE  233 (269)
Q Consensus       156 ~p~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~ls~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~~~~~  233 (269)
                      .|..|..+++|++|++++|.+++ ..|..+..+++|++|++++|.+.+.+| ..+..+++|++|++++|.+++..|..+.
T Consensus        90 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~  169 (549)
T 2z81_A           90 SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK  169 (549)
T ss_dssp             CHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT
T ss_pred             CHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhh
Confidence            66668888888888888888875 345667788888888888887444444 5677888888888888888877888888


Q ss_pred             cCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300          234 EMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       234 ~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l  269 (269)
                      .+++|++|++++|.+  ..+|...+..+++|++|++
T Consensus       170 ~l~~L~~L~l~~n~~--~~~~~~~~~~l~~L~~L~L  203 (549)
T 2z81_A          170 SIRDIHHLTLHLSES--AFLLEIFADILSSVRYLEL  203 (549)
T ss_dssp             TCSEEEEEEEECSBS--TTHHHHHHHSTTTBSEEEE
T ss_pred             ccccCceEecccCcc--cccchhhHhhcccccEEEc
Confidence            888888888888887  5566545556777777753

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.87  E-value=1.7e-21  Score=158.74  Aligned_cols=144  Identities=22%  Similarity=0.266  Sum_probs=127.5

Q ss_pred             CcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCc
Q 036300           78 PIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIP  157 (269)
Q Consensus        78 ~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p  157 (269)
                      +.+||..+    .++|+.|++++| .+.+..+..|..+++|++|+|++|.+++..|..|.++++|++|+|++|.++...+
T Consensus        23 l~~iP~~l----~~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~   97 (220)
T 2v9t_B           23 LTEIPTNL----PETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPK   97 (220)
T ss_dssp             CSSCCSSC----CTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCT
T ss_pred             cCcCCCcc----CcCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCH
Confidence            34455544    478999999999 7888777789999999999999999998889999999999999999999995545


Q ss_pred             cccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCC
Q 036300          158 ASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLG  226 (269)
Q Consensus       158 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~  226 (269)
                      ..|..+++|++|++++|.+++..+..|..+++|+.|++++|++++..+..+..+++|++|++++|.+..
T Consensus        98 ~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B           98 SLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             hHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            567899999999999999998888899999999999999999998777779999999999999999865

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.87  E-value=2.4e-22  Score=171.85  Aligned_cols=170  Identities=14%  Similarity=0.071  Sum_probs=101.6

Q ss_pred             CCccEEEccCCCCceeccC----ccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCC--Cc--cccCC
Q 036300           91 NSLDSLEFGSNPRLIGTIP----TSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQ--IP--ASIGG  162 (269)
Q Consensus        91 ~~L~~L~l~~n~~l~~~~p----~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~--~p--~~l~~  162 (269)
                      ++|++|++++| .+.+..+    ..+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+.  ++  ..+..
T Consensus       117 ~~L~~L~Ls~n-~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~  195 (310)
T 4glp_A          117 LALSSLRLRNV-SWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHK  195 (310)
T ss_dssp             BCCSSCEEESC-CCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTS
T ss_pred             CCCCEEEeecc-cccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhc
Confidence            55666666666 4544333    2233456666666666666655555666666666666666665431  11  12245


Q ss_pred             CCCCCEEEccCCcCCchhhh----hhcCcccCCEEeCcCCcCCCcCchhhcCC---CCCCEEEccCCccCCcchhhhhcC
Q 036300          163 LTKLLIFDLSRNNLSGSMLL----TLGKLARLLKLDLSYNNLQEKIPKEIGNL---HNVTFLDLRSNNFLGGLVGSIEEM  235 (269)
Q Consensus       163 l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~ls~n~l~~~~p~~~~~l---~~L~~L~L~~N~l~~~~~~~~~~l  235 (269)
                      +++|++|++++|+++. ++.    .+..+++|++|++++|++.+..|..+..+   ++|++|++++|+++ .+|..+.  
T Consensus       196 l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--  271 (310)
T 4glp_A          196 FPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--  271 (310)
T ss_dssp             SCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--
T ss_pred             CCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--
Confidence            6666666666666652 222    23566777777777777776656555555   57777777777777 4555443  


Q ss_pred             CCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300          236 VSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       236 ~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l  269 (269)
                      ++|++|++++|++  ..+|.  +..+++|+.|++
T Consensus       272 ~~L~~L~Ls~N~l--~~~~~--~~~l~~L~~L~L  301 (310)
T 4glp_A          272 AKLRVLDLSSNRL--NRAPQ--PDELPEVDNLTL  301 (310)
T ss_dssp             SCCSCEECCSCCC--CSCCC--TTSCCCCSCEEC
T ss_pred             CCCCEEECCCCcC--CCCch--hhhCCCccEEEC
Confidence            6777777777777  33442  456677777664

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.87  E-value=2.5e-21  Score=157.74  Aligned_cols=151  Identities=23%  Similarity=0.298  Sum_probs=136.8

Q ss_pred             cEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccC
Q 036300           94 DSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSR  173 (269)
Q Consensus        94 ~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~  173 (269)
                      +.++.+++ .+. .+|..+.  ++|+.|++++|.+++..+..|..+++|++|++++|.+++..|..|..+++|++|++++
T Consensus        14 ~~v~c~~~-~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           14 NIVDCRGK-GLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG   89 (220)
T ss_dssp             TEEECTTS-CCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred             CEEEcCCC-CcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence            57888888 454 4676554  7899999999999977777899999999999999999977789999999999999999


Q ss_pred             CcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCC
Q 036300          174 NNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPI  248 (269)
Q Consensus       174 n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  248 (269)
                      |.++...+..|..+++|++|++++|++++..|..|..+++|++|+|++|.+++..+..+..+++|++|++++|++
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B           90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence            999966666788999999999999999988888999999999999999999988888899999999999999998

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.87  E-value=2.5e-21  Score=157.66  Aligned_cols=152  Identities=17%  Similarity=0.147  Sum_probs=122.2

Q ss_pred             CCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccC-ccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCC
Q 036300           72 KPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIP-TSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGN  150 (269)
Q Consensus        72 ~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n  150 (269)
                      ....+.+++||..+    .+.+++|++++| .+.+..+ ..|..+++|++|++++|.+++..+..|.++++|++|++++|
T Consensus        17 ~~s~n~l~~iP~~~----~~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           17 DCSNQKLNKIPEHI----PQYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             ECCSSCCSSCCSCC----CTTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EeCCCCcccCccCC----CCCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence            33445566777755    456788999888 6777644 35788888999999999888777778888888999999999


Q ss_pred             cCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcc
Q 036300          151 QINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGL  228 (269)
Q Consensus       151 ~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~  228 (269)
                      .+++..+..|..+++|++|++++|++++..|..|..+++|++|++++|++++..|..+..+++|++|++++|.+....
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  169 (220)
T 2v70_A           92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC  169 (220)
T ss_dssp             CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred             ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence            888666677888888888888888888777888888888888888888888877888888888888888888887643

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.87  E-value=2.4e-21  Score=157.76  Aligned_cols=155  Identities=21%  Similarity=0.207  Sum_probs=130.9

Q ss_pred             cEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCC-CCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEcc
Q 036300           94 DSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLP-IEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLS  172 (269)
Q Consensus        94 ~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~  172 (269)
                      +.+++++| .+. .+|..+.  +.+++|++++|.+++..+ ..|..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus        14 ~~l~~s~n-~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   89 (220)
T 2v70_A           14 TTVDCSNQ-KLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT   89 (220)
T ss_dssp             TEEECCSS-CCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEeEeCCC-Ccc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence            47899888 554 4676554  457899999999987644 457889999999999999986666688999999999999


Q ss_pred             CCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCC
Q 036300          173 RNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGG  252 (269)
Q Consensus       173 ~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~  252 (269)
                      +|.+++..+..|..+++|++|++++|++++..|..+..+++|++|+|++|.+++..|..|..+++|++|++++|++ ...
T Consensus        90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~c~  168 (220)
T 2v70_A           90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF-NCN  168 (220)
T ss_dssp             SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE-ECS
T ss_pred             CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC-cCC
Confidence            9999887778888999999999999999988788888999999999999999988888999999999999999998 444


Q ss_pred             C
Q 036300          253 L  253 (269)
Q Consensus       253 ~  253 (269)
                      .
T Consensus       169 c  169 (220)
T 2v70_A          169 C  169 (220)
T ss_dssp             G
T ss_pred             C
Confidence            3

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.86  E-value=4.4e-21  Score=176.71  Aligned_cols=130  Identities=20%  Similarity=0.292  Sum_probs=76.4

Q ss_pred             CCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCc--hhhhhhcCcccCCEEeCcCCcCCCcCch-hhcCCCC
Q 036300          137 SKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSG--SMLLTLGKLARLLKLDLSYNNLQEKIPK-EIGNLHN  213 (269)
Q Consensus       137 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~ls~n~l~~~~p~-~~~~l~~  213 (269)
                      ..+++|++|++++|.+++..|..+..+++|++|++++|++++  .+|..+..+++|++|++++|++++.+|. .+..+++
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~  429 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES  429 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence            455666777777777766666666777777777777777765  3345566667777777777776653443 2334444


Q ss_pred             ----------------------CCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300          214 ----------------------VTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       214 ----------------------L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l  269 (269)
                                            |++|++++|+++ .+|..+..+++|++|++++|++  ..+|...+..+++|+.|++
T Consensus       430 L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l--~~l~~~~~~~l~~L~~L~l  504 (562)
T 3a79_B          430 ILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQL--KSVPDGVFDRLTSLQYIWL  504 (562)
T ss_dssp             CCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCC--CCCCTTSTTTCTTCCCEEC
T ss_pred             CCEEECCCCCCCcchhhhhcCcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCC--CCCCHHHHhcCCCCCEEEe
Confidence                                  444444444444 3344444556666666666666  3455433556666665543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.86  E-value=1.2e-20  Score=163.44  Aligned_cols=164  Identities=20%  Similarity=0.312  Sum_probs=127.1

Q ss_pred             CCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEE
Q 036300           91 NSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFD  170 (269)
Q Consensus        91 ~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  170 (269)
                      ++|++|++++| .+.+. +. +..+++|+.|++++|.+++..+  +..+++|++|++++|.+++ ++. +..+++|++|+
T Consensus       177 ~~L~~L~l~~n-~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~  249 (347)
T 4fmz_A          177 TDLYSLSLNYN-QIEDI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD-LSP-LANLSQLTWLE  249 (347)
T ss_dssp             TTCSEEECTTS-CCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEE
T ss_pred             CCCCEEEccCC-ccccc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCC-Ccc-hhcCCCCCEEE
Confidence            56666666666 44432 22 5566666666666666663322  6778888999999998884 444 78889999999


Q ss_pred             ccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCC
Q 036300          171 LSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFG  250 (269)
Q Consensus       171 l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  250 (269)
                      +++|.+++.  ..+..+++|+.|++++|++++.  ..+..+++|++|++++|.+++..+..+..+++|++|++++|++ .
T Consensus       250 l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l-~  324 (347)
T 4fmz_A          250 IGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI-T  324 (347)
T ss_dssp             CCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSC-C
T ss_pred             CCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcc-c
Confidence            999988853  4578889999999999999863  4588899999999999999988889999999999999999999 4


Q ss_pred             CCCCccccccCcCCceecC
Q 036300          251 GGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       251 ~~~p~~~~~~l~~L~~L~l  269 (269)
                      + ++.  +..+++|++|++
T Consensus       325 ~-~~~--~~~l~~L~~L~l  340 (347)
T 4fmz_A          325 D-IRP--LASLSKMDSADF  340 (347)
T ss_dssp             C-CGG--GGGCTTCSEESS
T ss_pred             c-ccC--hhhhhccceeeh
Confidence            4 443  778999999875

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.86  E-value=4.1e-21  Score=153.65  Aligned_cols=150  Identities=24%  Similarity=0.389  Sum_probs=131.3

Q ss_pred             cCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEE
Q 036300           90 ANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIF  169 (269)
Q Consensus        90 ~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  169 (269)
                      +++|++|++++| .+. .+| .+..+++|++|++++|.++  .+..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus        43 l~~L~~L~l~~n-~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           43 MNSLTYITLANI-NVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HHTCCEEEEESS-CCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred             cCCccEEeccCC-Ccc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence            388999999999 666 566 6899999999999999776  33478899999999999999997788889999999999


Q ss_pred             EccCCcCCchhhhhhcCcccCCEEeCcCCc-CCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCC
Q 036300          170 DLSRNNLSGSMLLTLGKLARLLKLDLSYNN-LQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPI  248 (269)
Q Consensus       170 ~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  248 (269)
                      ++++|.+++..+..+..+++|++|++++|. +. .+| .+..+++|++|++++|.+++ ++ .+..+++|++|++++|++
T Consensus       118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC--
T ss_pred             EecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCccc
Confidence            999999998888999999999999999998 65 466 68899999999999999986 34 788999999999999998

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.86  E-value=1e-21  Score=167.95  Aligned_cols=172  Identities=17%  Similarity=0.138  Sum_probs=145.5

Q ss_pred             CCccEEEccCCCCceeccCccc--cCCCCCCEEEcccCCCCCCCC----CCCCCCCCCCEEEccCCcCCCCCccccCCCC
Q 036300           91 NSLDSLEFGSNPRLIGTIPTSI--DYLKNLQSLVLLEKGLTGKLP----IEPSKLVNLRRLALAGNQINGQIPASIGGLT  164 (269)
Q Consensus        91 ~~L~~L~l~~n~~l~~~~p~~l--~~l~~L~~L~L~~n~l~~~~p----~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~  164 (269)
                      ++|++|++++| .+.+..|..+  ..+++|++|++++|.+++..+    ..+..+++|++|++++|.+++..|..+..++
T Consensus        91 ~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~  169 (310)
T 4glp_A           91 SRLKELTLEDL-KITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP  169 (310)
T ss_dssp             SCCCEEEEESC-CCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred             CceeEEEeeCC-EeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence            67999999999 7999999888  899999999999999997555    3456799999999999999977788999999


Q ss_pred             CCCEEEccCCcCCch--hh--hhhcCcccCCEEeCcCCcCCCcCch----hhcCCCCCCEEEccCCccCCcchhhhhcC-
Q 036300          165 KLLIFDLSRNNLSGS--ML--LTLGKLARLLKLDLSYNNLQEKIPK----EIGNLHNVTFLDLRSNNFLGGLVGSIEEM-  235 (269)
Q Consensus       165 ~L~~L~l~~n~l~~~--~~--~~~~~l~~L~~L~ls~n~l~~~~p~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-  235 (269)
                      +|++|++++|++.+.  ++  ..+..+++|++|++++|+++. ++.    .+..+++|++|+|++|.+++..|..+..+ 
T Consensus       170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~  248 (310)
T 4glp_A          170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM  248 (310)
T ss_dssp             TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred             CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence            999999999998753  22  234688999999999999974 333    25788999999999999998878777776 


Q ss_pred             --CCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300          236 --VSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       236 --~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l  269 (269)
                        ++|++|++++|.+  ..+|.. +  .++|+.|++
T Consensus       249 ~~~~L~~L~Ls~N~l--~~lp~~-~--~~~L~~L~L  279 (310)
T 4glp_A          249 WSSALNSLNLSFAGL--EQVPKG-L--PAKLRVLDL  279 (310)
T ss_dssp             CCTTCCCEECCSSCC--CSCCSC-C--CSCCSCEEC
T ss_pred             CcCcCCEEECCCCCC--Cchhhh-h--cCCCCEEEC
Confidence              6999999999999  478863 3  278888875

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.86  E-value=1.4e-20  Score=154.24  Aligned_cols=155  Identities=26%  Similarity=0.347  Sum_probs=137.0

Q ss_pred             ccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEcc
Q 036300           93 LDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLS  172 (269)
Q Consensus        93 L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~  172 (269)
                      -+.++.+++ .+ ..+|..+.  ++|++|++++|.+++..|..+..+++|++|++++|+++...+..|..+++|++|+++
T Consensus        21 ~~~v~c~~~-~l-~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls   96 (229)
T 3e6j_A           21 GTTVDCRSK-RH-ASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG   96 (229)
T ss_dssp             TTEEECTTS-CC-SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEeEccCC-Cc-CccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence            457888888 44 55776554  899999999999998889999999999999999999985555677999999999999


Q ss_pred             CCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCC
Q 036300          173 RNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGG  252 (269)
Q Consensus       173 ~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~  252 (269)
                      +|++++..+..|..+++|++|++++|+++ .+|..+..+++|++|+|++|++++..+..+..+++|++|++++|++ ...
T Consensus        97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~-~c~  174 (229)
T 3e6j_A           97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW-DCE  174 (229)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB-CTT
T ss_pred             CCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc-cCC
Confidence            99999777777899999999999999999 6888899999999999999999987778899999999999999999 544


Q ss_pred             C
Q 036300          253 L  253 (269)
Q Consensus       253 ~  253 (269)
                      .
T Consensus       175 c  175 (229)
T 3e6j_A          175 C  175 (229)
T ss_dssp             B
T ss_pred             c
Confidence            3

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.86  E-value=1.3e-20  Score=159.77  Aligned_cols=161  Identities=27%  Similarity=0.371  Sum_probs=71.2

Q ss_pred             CCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEE
Q 036300           91 NSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFD  170 (269)
Q Consensus        91 ~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  170 (269)
                      ++|++|++++| .+.. ++ .+..+++|++|++++|.+++..+  +..+++|++|++++|.+++ +| .+..+++|++|+
T Consensus        46 ~~L~~L~l~~~-~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~  118 (291)
T 1h6t_A           46 NSIDQIIANNS-DIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS  118 (291)
T ss_dssp             HTCCEEECTTS-CCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred             CcccEEEccCC-Cccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEE
Confidence            44445555444 3322 22 24444445555555554443222  4444445555555554442 22 244444455555


Q ss_pred             ccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCC
Q 036300          171 LSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFG  250 (269)
Q Consensus       171 l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  250 (269)
                      +++|.+++.  ..+..+++|+.|++++|++++.  ..+..+++|++|++++|.+++..+  +..+++|++|++++|.+  
T Consensus       119 L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i--  190 (291)
T 1h6t_A          119 LEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI--  190 (291)
T ss_dssp             CTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC--
T ss_pred             CCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcC--
Confidence            555444432  2344444455555555444432  234444445555555554443322  44444455555555544  


Q ss_pred             CCCCccccccCcCCceec
Q 036300          251 GGLNGIRWENLQNLEIWI  268 (269)
Q Consensus       251 ~~~p~~~~~~l~~L~~L~  268 (269)
                      ..++  .+..+++|+.|+
T Consensus       191 ~~l~--~l~~l~~L~~L~  206 (291)
T 1h6t_A          191 SDLR--ALAGLKNLDVLE  206 (291)
T ss_dssp             CBCG--GGTTCTTCSEEE
T ss_pred             CCCh--hhccCCCCCEEE
Confidence            2233  244444444443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.85  E-value=2.1e-21  Score=168.81  Aligned_cols=218  Identities=17%  Similarity=0.120  Sum_probs=152.8

Q ss_pred             CCCCCCCceEeecCCCceEEEEEEeCCCCCCCcccccccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCc
Q 036300           31 FGRTGLQGVSCDFFHGLWHVSAISIGPVYDNSLVCSQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPT  110 (269)
Q Consensus        31 C~~~~~~gv~C~~~~~~~~v~~l~l~~~~~~~~~~~~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~  110 (269)
                      |.+.   .|.|...+         +.++|.+.  ..+++.+....+.+.+||...|.++ ++|++|+|++| .+.+.+|.
T Consensus         9 C~~~---~v~C~~~~---------Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l-~~L~~L~Ls~N-~i~~~i~~   72 (350)
T 4ay9_X            9 CSNR---VFLCQESK---------VTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGF-GDLEKIEISQN-DVLEVIEA   72 (350)
T ss_dssp             EETT---EEEEESTT---------CCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTC-TTCCEEEEECC-TTCCEECT
T ss_pred             eeCC---EEEecCCC---------CCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCC-CCCCEEECcCC-CCCCccCh
Confidence            5555   78887532         33444432  2345666666688889999888876 89999999999 67676664


Q ss_pred             -cccCCCCCCE-EEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccC-CcCCchhhhhhcCc
Q 036300          111 -SIDYLKNLQS-LVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSR-NNLSGSMLLTLGKL  187 (269)
Q Consensus       111 -~l~~l~~L~~-L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~l  187 (269)
                       .|..++++++ +.+.+|+++...|..|..+++|++|++++|+++...+..+....++..+++.+ +.+....+..|..+
T Consensus        73 ~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~  152 (350)
T 4ay9_X           73 DVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGL  152 (350)
T ss_dssp             TSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTS
T ss_pred             hHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhc
Confidence             6788888775 56677889877788899999999999999999855555556666777777765 45554444455555


Q ss_pred             c-cCCEEeCcCCcCCCcCchhhcCCCCCCEEEccC-CccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCc
Q 036300          188 A-RLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRS-NNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLE  265 (269)
Q Consensus       188 ~-~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~  265 (269)
                      . .++.|++++|+++. +|.......+|+++++++ |.++...+..|..+++|++|++++|++  ..+|...+.++++|+
T Consensus       153 ~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l--~~lp~~~~~~L~~L~  229 (350)
T 4ay9_X          153 SFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI--HSLPSYGLENLKKLR  229 (350)
T ss_dssp             BSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCC--CCCCSSSCTTCCEEE
T ss_pred             chhhhhhccccccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCc--CccChhhhccchHhh
Confidence            3 57888888888874 454445566788888875 555544445678888888888888888  566665555555554


Q ss_pred             ee
Q 036300          266 IW  267 (269)
Q Consensus       266 ~L  267 (269)
                      .+
T Consensus       230 ~l  231 (350)
T 4ay9_X          230 AR  231 (350)
T ss_dssp             CT
T ss_pred             hc
Confidence            43

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.85  E-value=1e-21  Score=168.47  Aligned_cols=183  Identities=19%  Similarity=0.153  Sum_probs=141.2

Q ss_pred             CCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCC
Q 036300           77 SPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQI  156 (269)
Q Consensus        77 ~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~  156 (269)
                      ...+++..++... ++|++|++++| .+.+..|..|..+++|++|++++|.+++..+  +..+++|++|++++|.+++ +
T Consensus        21 ~l~~~~~~~~~~~-~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~-l   95 (317)
T 3o53_A           21 SLKQALASLRQSA-WNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-L   95 (317)
T ss_dssp             THHHHHHHHHTTG-GGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE-E
T ss_pred             chhhhHHHHhccC-CCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc-c
Confidence            3444555555543 78999999999 7888777899999999999999999986554  8888999999998888763 2


Q ss_pred             cc-----------------ccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhh-cCCCCCCEEE
Q 036300          157 PA-----------------SIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEI-GNLHNVTFLD  218 (269)
Q Consensus       157 p~-----------------~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~-~~l~~L~~L~  218 (269)
                      +.                 ....+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+ ..+++|++|+
T Consensus        96 ~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~  175 (317)
T 3o53_A           96 LVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN  175 (317)
T ss_dssp             EECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred             cCCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEE
Confidence            21                 01235677888888888887667778888889999999998887666655 3678899999


Q ss_pred             ccCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300          219 LRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       219 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l  269 (269)
                      +++|.+++. + ....+++|++|++++|.+  ..+|. .+..+++|+.|++
T Consensus       176 L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l--~~l~~-~~~~l~~L~~L~L  221 (317)
T 3o53_A          176 LQYNFIYDV-K-GQVVFAKLKTLDLSSNKL--AFMGP-EFQSAAGVTWISL  221 (317)
T ss_dssp             CTTSCCCEE-E-CCCCCTTCCEEECCSSCC--CEECG-GGGGGTTCSEEEC
T ss_pred             CCCCcCccc-c-cccccccCCEEECCCCcC--Ccchh-hhcccCcccEEEC
Confidence            999988854 3 233478899999999999  55665 4788899998875

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.85  E-value=2.7e-21  Score=175.39  Aligned_cols=171  Identities=19%  Similarity=0.161  Sum_probs=137.9

Q ss_pred             CCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCcc------------
Q 036300           91 NSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPA------------  158 (269)
Q Consensus        91 ~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~------------  158 (269)
                      ++|++|+|++| .+.+..|..|..+++|++|+|++|.+++..|  +..+++|++|++++|.+++..+.            
T Consensus        34 ~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~  110 (487)
T 3oja_A           34 WNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNN  110 (487)
T ss_dssp             GGCCEEECCSS-CCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSC
T ss_pred             CCccEEEeeCC-cCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCc
Confidence            48999999999 7888878899999999999999999997655  88888998888888877632110            


Q ss_pred             ----ccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhc-CCCCCCEEEccCCccCCcchhhhh
Q 036300          159 ----SIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIG-NLHNVTFLDLRSNNFLGGLVGSIE  233 (269)
Q Consensus       159 ----~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~~~~~~  233 (269)
                          ....+++|++|++++|.+++..|..++.+++|+.|++++|.+++..|..+. .+++|++|+|++|.+++..+  ..
T Consensus       111 l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~  188 (487)
T 3oja_A          111 ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QV  188 (487)
T ss_dssp             CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CC
T ss_pred             CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc--cc
Confidence                012356788888888888877787888889999999999999887777775 78899999999999886532  33


Q ss_pred             cCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300          234 EMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       234 ~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l  269 (269)
                      .+++|++|++++|.+  ..+|. .+..+++|+.|++
T Consensus       189 ~l~~L~~L~Ls~N~l--~~~~~-~~~~l~~L~~L~L  221 (487)
T 3oja_A          189 VFAKLKTLDLSSNKL--AFMGP-EFQSAAGVTWISL  221 (487)
T ss_dssp             CCTTCCEEECCSSCC--CEECG-GGGGGTTCSEEEC
T ss_pred             cCCCCCEEECCCCCC--CCCCH-hHcCCCCccEEEe
Confidence            588999999999999  45665 4888899998875

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=3.8e-20  Score=158.17  Aligned_cols=162  Identities=22%  Similarity=0.354  Sum_probs=140.7

Q ss_pred             CCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEE
Q 036300           91 NSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFD  170 (269)
Q Consensus        91 ~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  170 (269)
                      ++|++|++++| .+.. ++ .+..+++|++|++++|.+++ ++. +..+++|++|++++|.++ .++ .+..+++|++|+
T Consensus        41 ~~L~~L~l~~~-~i~~-l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~  113 (308)
T 1h6u_A           41 DGITTLSAFGT-GVTT-IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLD  113 (308)
T ss_dssp             HTCCEEECTTS-CCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCS-CCG-GGTTCTTCCEEE
T ss_pred             CCcCEEEeeCC-CccC-ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCC-Cch-hhcCCCCCCEEE
Confidence            89999999999 6655 55 68899999999999999995 444 999999999999999998 455 689999999999


Q ss_pred             ccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCC
Q 036300          171 LSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFG  250 (269)
Q Consensus       171 l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  250 (269)
                      +++|.+++. +. +..+++|+.|++++|++++. +. +..+++|++|++++|.+++..+  +..+++|++|++++|.+  
T Consensus       114 l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l--  185 (308)
T 1h6u_A          114 LTSTQITDV-TP-LAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI--  185 (308)
T ss_dssp             CTTSCCCCC-GG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC--
T ss_pred             CCCCCCCCc-hh-hcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCcc--
Confidence            999999864 43 88999999999999999864 43 8899999999999999986444  89999999999999999  


Q ss_pred             CCCCccccccCcCCceecC
Q 036300          251 GGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       251 ~~~p~~~~~~l~~L~~L~l  269 (269)
                      ..++.  +..+++|++|++
T Consensus       186 ~~~~~--l~~l~~L~~L~L  202 (308)
T 1h6u_A          186 SDISP--LASLPNLIEVHL  202 (308)
T ss_dssp             CCCGG--GGGCTTCCEEEC
T ss_pred             CcChh--hcCCCCCCEEEc
Confidence            45553  788999999875

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.85  E-value=5.8e-20  Score=148.04  Aligned_cols=156  Identities=24%  Similarity=0.232  Sum_probs=133.7

Q ss_pred             cEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccC
Q 036300           94 DSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSR  173 (269)
Q Consensus        94 ~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~  173 (269)
                      +.++.+++ .+. .+|..+  .++|++|++++|.+++..+..+..+++|++|++++|++++..+..|..+++|++|++++
T Consensus        10 ~~v~c~~~-~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~   85 (208)
T 2o6s_A           10 TTVECYSQ-GRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST   85 (208)
T ss_dssp             TEEECCSS-CCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEecCC-Ccc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence            56777777 444 356544  46899999999999976666789999999999999999965556678999999999999


Q ss_pred             CcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCCC
Q 036300          174 NNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGL  253 (269)
Q Consensus       174 n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  253 (269)
                      |.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++ .+..
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~-~~~~  164 (208)
T 2o6s_A           86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW-DCTC  164 (208)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB-CCCT
T ss_pred             CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe-ecCC
Confidence            999977677789999999999999999987667789999999999999999987777799999999999999998 5544


Q ss_pred             C
Q 036300          254 N  254 (269)
Q Consensus       254 p  254 (269)
                      |
T Consensus       165 ~  165 (208)
T 2o6s_A          165 P  165 (208)
T ss_dssp             T
T ss_pred             C
Confidence            3

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.85  E-value=1.2e-20  Score=164.87  Aligned_cols=169  Identities=21%  Similarity=0.156  Sum_probs=143.2

Q ss_pred             cEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCC-CCCCCCEEEccCCcCCCCCccccCCCCCCCEEEcc
Q 036300           94 DSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPS-KLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLS  172 (269)
Q Consensus        94 ~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~  172 (269)
                      +.++++++ .+.. +|..+.  +.++.|+|++|.+++..+..+. ++++|++|+|++|++++..+..|..+++|++|+++
T Consensus        21 ~~l~c~~~-~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQ-QLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSS-CCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCC-CcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            57899888 5554 776554  5689999999999977777777 99999999999999997667789999999999999


Q ss_pred             CCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhh---hcCCCCCeEEccCCCCC
Q 036300          173 RNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSI---EEMVSLKEMVVSNNPIF  249 (269)
Q Consensus       173 ~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~---~~l~~L~~L~l~~N~l~  249 (269)
                      +|+++...+..|..+++|+.|++++|++.+..|..|..+++|++|+|++|.+++..+..+   ..+++|++|++++|.+ 
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l-  175 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL-  175 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC-
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC-
Confidence            999997777789999999999999999998888899999999999999999997655555   6799999999999999 


Q ss_pred             CCCCCccccccCcCC--ceec
Q 036300          250 GGGLNGIRWENLQNL--EIWI  268 (269)
Q Consensus       250 ~~~~p~~~~~~l~~L--~~L~  268 (269)
                       ..+|...+..++.+  +.|+
T Consensus       176 -~~l~~~~~~~l~~~~l~~l~  195 (361)
T 2xot_A          176 -KKLPLTDLQKLPAWVKNGLY  195 (361)
T ss_dssp             -CCCCHHHHHHSCHHHHTTEE
T ss_pred             -CccCHHHhhhccHhhcceEE
Confidence             56776567666653  4444

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.84  E-value=4.9e-22  Score=171.36  Aligned_cols=196  Identities=16%  Similarity=0.182  Sum_probs=145.3

Q ss_pred             cccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceec-cCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEc
Q 036300           69 KIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGT-IPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLAL  147 (269)
Q Consensus        69 ~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  147 (269)
                      ..+....+.++..+..++.  +++|++|++++| .+.+. ++..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        73 ~~L~l~~n~l~~~~~~~~~--~~~L~~L~L~~~-~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L  149 (336)
T 2ast_B           73 IAFRCPRSFMDQPLAEHFS--PFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL  149 (336)
T ss_dssp             SEEECTTCEECSCCCSCCC--CBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred             eEEEcCCccccccchhhcc--CCCCCEEEccCC-CcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence            3333333434444444432  478899999888 66655 7777888889999999998888777777888888999999


Q ss_pred             cCC-cCCCC-CccccCCCCCCCEEEccCC-cCCch-hhhhhcCcc-cCCEEeCcCC--cCC-CcCchhhcCCCCCCEEEc
Q 036300          148 AGN-QINGQ-IPASIGGLTKLLIFDLSRN-NLSGS-MLLTLGKLA-RLLKLDLSYN--NLQ-EKIPKEIGNLHNVTFLDL  219 (269)
Q Consensus       148 ~~n-~l~~~-~p~~l~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~-~L~~L~ls~n--~l~-~~~p~~~~~l~~L~~L~L  219 (269)
                      ++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|++|++++|  .++ +.+|..+..+++|++|++
T Consensus       150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l  229 (336)
T 2ast_B          150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL  229 (336)
T ss_dssp             TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence            988 57642 5666778888999999988 88754 567777888 8999999888  455 345667778888999999


Q ss_pred             cCCc-cCCcchhhhhcCCCCCeEEccCCC-CCCCCCCccccccCcCCceecC
Q 036300          220 RSNN-FLGGLVGSIEEMVSLKEMVVSNNP-IFGGGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       220 ~~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~p~~~~~~l~~L~~L~l  269 (269)
                      ++|. +++..+..+..+++|++|++++|. + ..... ..+.++++|++|++
T Consensus       230 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~-~~l~~~~~L~~L~l  279 (336)
T 2ast_B          230 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDI-IPETL-LELGEIPTLKTLQV  279 (336)
T ss_dssp             TTCTTCCGGGGGGGGGCTTCCEEECTTCTTC-CGGGG-GGGGGCTTCCEEEC
T ss_pred             CCCCcCCHHHHHHHhCCCCCCEeeCCCCCCC-CHHHH-HHHhcCCCCCEEec
Confidence            9888 777777788888899999998884 4 22211 25677888888875

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.84  E-value=7.8e-20  Score=164.74  Aligned_cols=162  Identities=25%  Similarity=0.353  Sum_probs=91.2

Q ss_pred             CCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEE
Q 036300           91 NSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFD  170 (269)
Q Consensus        91 ~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  170 (269)
                      ++|++|++++| .+.+.  +.+..+++|++|++++|.+.+..+  +..+++|++|++++|.+++. +. +..+++|++|+
T Consensus       221 ~~L~~L~l~~n-~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~  293 (466)
T 1o6v_A          221 TNLDELSLNGN-QLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI-SP-LAGLTALTNLE  293 (466)
T ss_dssp             TTCCEEECCSS-CCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCC-GG-GTTCTTCSEEE
T ss_pred             CCCCEEECCCC-Ccccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcc-cc-ccCCCccCeEE
Confidence            44455555444 33321  234455555555555555553322  55556666666666666532 22 55566666666


Q ss_pred             ccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCC
Q 036300          171 LSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFG  250 (269)
Q Consensus       171 l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  250 (269)
                      +++|++++..+  +..+++|+.|++++|++++..|  +..+++|++|++++|++++.  ..+..+++|++|++++|++ .
T Consensus       294 L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l-~  366 (466)
T 1o6v_A          294 LNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQI-S  366 (466)
T ss_dssp             CCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCC-C
T ss_pred             cCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCcc-C
Confidence            66666654333  5556666666666666665433  55666666666666666643  3566667777777777776 3


Q ss_pred             CCCCccccccCcCCceecC
Q 036300          251 GGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       251 ~~~p~~~~~~l~~L~~L~l  269 (269)
                      +..|   +..+++|+.|++
T Consensus       367 ~~~~---~~~l~~L~~L~l  382 (466)
T 1o6v_A          367 DLTP---LANLTRITQLGL  382 (466)
T ss_dssp             BCGG---GTTCTTCCEEEC
T ss_pred             ccch---hhcCCCCCEEec
Confidence            3333   556666666653

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.84  E-value=2e-19  Score=155.69  Aligned_cols=185  Identities=19%  Similarity=0.299  Sum_probs=96.1

Q ss_pred             cccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCC--------------
Q 036300           67 QCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKL--------------  132 (269)
Q Consensus        67 ~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~--------------  132 (269)
                      +++.+....+.+..+|.  +..+ ++|++|++++| .+.+ ++ .+..+++|++|++++|.+.+..              
T Consensus        67 ~L~~L~l~~n~i~~~~~--~~~l-~~L~~L~L~~n-~i~~-~~-~~~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~  140 (347)
T 4fmz_A           67 NLEYLNLNGNQITDISP--LSNL-VKLTNLYIGTN-KITD-IS-ALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLG  140 (347)
T ss_dssp             TCCEEECCSSCCCCCGG--GTTC-TTCCEEECCSS-CCCC-CG-GGTTCTTCSEEECTTSCCCCCGGGTTCTTCCEEECT
T ss_pred             CccEEEccCCccccchh--hhcC-CcCCEEEccCC-cccC-ch-HHcCCCcCCEEECcCCcccCchhhccCCceeEEECC
Confidence            33333333344444444  2232 55555555555 3333 22 3455555555555555554211              


Q ss_pred             -------CCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCc
Q 036300          133 -------PIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIP  205 (269)
Q Consensus       133 -------p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p  205 (269)
                             +..+..+++|++|++++|.+.+ ++. +..+++|++|++++|.+.+..+  +..+++|+.+++++|.+.+..+
T Consensus       141 ~n~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~  216 (347)
T 4fmz_A          141 ANHNLSDLSPLSNMTGLNYLTVTESKVKD-VTP-IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP  216 (347)
T ss_dssp             TCTTCCCCGGGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG
T ss_pred             CCCCcccccchhhCCCCcEEEecCCCcCC-chh-hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch
Confidence                   1124444444444444444442 221 4455555555555555543222  4455555555555555553222


Q ss_pred             hhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300          206 KEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       206 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l  269 (269)
                        +..+++|++|++++|.+++..+  +..+++|++|++++|.+  ..++  .+..+++|++|++
T Consensus       217 --~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l--~~~~--~~~~l~~L~~L~l  272 (347)
T 4fmz_A          217 --VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQI--SDIN--AVKDLTKLKMLNV  272 (347)
T ss_dssp             --GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC--CCCG--GGTTCTTCCEEEC
T ss_pred             --hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCcc--CCCh--hHhcCCCcCEEEc
Confidence              5666777777777777764433  66777777777777777  3343  4667777777764

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.83  E-value=1.3e-20  Score=173.31  Aligned_cols=195  Identities=23%  Similarity=0.301  Sum_probs=114.8

Q ss_pred             CCCCCCCCCCCC-----CCCCCCce-EeecCCCceEEEEEEeC-----CCCCCCcccccccccCCCCCCCcccCchhHHh
Q 036300           20 WWNGSDLYPDPF-----GRTGLQGV-SCDFFHGLWHVSAISIG-----PVYDNSLVCSQCKIFKPPLQSPIEIPSSNWQK   88 (269)
Q Consensus        20 ~W~~~~~~~~~C-----~~~~~~gv-~C~~~~~~~~v~~l~l~-----~~~~~~~~~~~l~~~~~~~~~~~~lp~~~~~~   88 (269)
                      +|...   .++|     .|.   |+ .|...    +++.+++.     .+|...  +.++..+....|.+..|| ..   
T Consensus        35 ~W~~~---~~~~~~~~~~~~---~l~~C~~~----~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip-~~---   98 (571)
T 3cvr_A           35 KWEKQ---ALPGENRNEAVS---LLKECLIN----QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP-EL---   98 (571)
T ss_dssp             HHHTT---CCTTCCHHHHHH---HHHHHHHT----TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC-CC---
T ss_pred             HHhcc---CCccccccchhh---hccccccC----CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc-cc---
Confidence            47554   3788     465   88 67643    46677763     223222  134445555555556666 22   


Q ss_pred             hcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCE
Q 036300           89 LANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLI  168 (269)
Q Consensus        89 l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  168 (269)
                       +++|++|++++| .+.+ +|. +..  +|++|++++|.+++ +|.   .+++|++|++++|.+++ +|.   .+++|++
T Consensus        99 -l~~L~~L~Ls~N-~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~  164 (571)
T 3cvr_A           99 -PASLEYLDACDN-RLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEV  164 (571)
T ss_dssp             -CTTCCEEECCSS-CCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCE
T ss_pred             -cCCCCEEEccCC-CCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCE
Confidence             366667777666 5555 555 443  66677777776664 454   45666777777776663 554   4566677


Q ss_pred             EEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCC-------CEEEccCCccCCcchhhhhcCCCCCeE
Q 036300          169 FDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNV-------TFLDLRSNNFLGGLVGSIEEMVSLKEM  241 (269)
Q Consensus       169 L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L-------~~L~L~~N~l~~~~~~~~~~l~~L~~L  241 (269)
                      |++++|.+++ +|. +.  ++|+.|++++|+++ .+|. +..  +|       +.|+|++|.|+ .+|..+..+++|++|
T Consensus       165 L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L  235 (571)
T 3cvr_A          165 LSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTI  235 (571)
T ss_dssp             EECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEE
T ss_pred             EECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEE
Confidence            7777776664 444 43  66777777777666 3454 433  55       66777777666 455556666777777


Q ss_pred             EccCCCCCCCCCC
Q 036300          242 VVSNNPIFGGGLN  254 (269)
Q Consensus       242 ~l~~N~l~~~~~p  254 (269)
                      ++++|++ .+.+|
T Consensus       236 ~L~~N~l-~~~~p  247 (571)
T 3cvr_A          236 ILEDNPL-SSRIR  247 (571)
T ss_dssp             ECCSSSC-CHHHH
T ss_pred             EeeCCcC-CCcCH
Confidence            7777776 44444

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.83  E-value=1.5e-19  Score=162.80  Aligned_cols=183  Identities=30%  Similarity=0.376  Sum_probs=129.0

Q ss_pred             cccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEE
Q 036300           67 QCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLA  146 (269)
Q Consensus        67 ~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  146 (269)
                      ++..+....+....++.  +..+ ++|++|++++| .+.+..|  ++.+++|++|++++|.+++ + ..+..+++|++|+
T Consensus       178 ~L~~L~l~~n~l~~~~~--l~~l-~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~  249 (466)
T 1o6v_A          178 TLERLDISSNKVSDISV--LAKL-TNLESLIATNN-QISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLD  249 (466)
T ss_dssp             TCCEEECCSSCCCCCGG--GGGC-TTCSEEECCSS-CCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEE
T ss_pred             CCCEEECcCCcCCCChh--hccC-CCCCEEEecCC-ccccccc--ccccCCCCEEECCCCCccc-c-hhhhcCCCCCEEE
Confidence            34444444444455543  2333 67777777777 5555433  5667777777777777764 2 3567778888888


Q ss_pred             ccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCC
Q 036300          147 LAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLG  226 (269)
Q Consensus       147 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~  226 (269)
                      +++|.+++..+  +..+++|++|++++|.+++..+  +..+++|+.|++++|++.+.. . +..+++|+.|++++|++++
T Consensus       250 l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~-~-~~~l~~L~~L~L~~n~l~~  323 (466)
T 1o6v_A          250 LANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDIS-P-ISNLKNLTYLTLYFNNISD  323 (466)
T ss_dssp             CCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCG-G-GGGCTTCSEEECCSSCCSC
T ss_pred             CCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCch-h-hcCCCCCCEEECcCCcCCC
Confidence            88888874433  7778888888888888875443  777888888888888887643 3 6788888888888888887


Q ss_pred             cchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300          227 GLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       227 ~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l  269 (269)
                      ..|  +..+++|++|++++|++  ..++  .+.++++|+.|++
T Consensus       324 ~~~--~~~l~~L~~L~l~~n~l--~~~~--~l~~l~~L~~L~l  360 (466)
T 1o6v_A          324 ISP--VSSLTKLQRLFFYNNKV--SDVS--SLANLTNINWLSA  360 (466)
T ss_dssp             CGG--GGGCTTCCEEECCSSCC--CCCG--GGTTCTTCCEEEC
T ss_pred             chh--hccCccCCEeECCCCcc--CCch--hhccCCCCCEEeC
Confidence            655  67888888888888888  3343  5778888888865

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.83  E-value=3.8e-20  Score=156.96  Aligned_cols=159  Identities=23%  Similarity=0.303  Sum_probs=134.7

Q ss_pred             CCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCC
Q 036300           74 PLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQIN  153 (269)
Q Consensus        74 ~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~  153 (269)
                      ..+.+..+|.  +.. +++|++|++++| .+.+..+  +..+++|++|++++|.+++ ++ .+..+++|++|++++|.++
T Consensus        54 ~~~~i~~~~~--~~~-l~~L~~L~L~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~  125 (291)
T 1h6t_A           54 NNSDIKSVQG--IQY-LPNVTKLFLNGN-KLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGIS  125 (291)
T ss_dssp             TTSCCCCCTT--GGG-CTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCC
T ss_pred             cCCCcccChh--Hhc-CCCCCEEEccCC-ccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCC
Confidence            3344455554  334 499999999999 6776443  8999999999999999985 44 4899999999999999999


Q ss_pred             CCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhh
Q 036300          154 GQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIE  233 (269)
Q Consensus       154 ~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~  233 (269)
                      + + ..+..+++|++|++++|.+++.  ..+..+++|+.|++++|++++..+  +..+++|++|++++|.+++ ++ .+.
T Consensus       126 ~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~  197 (291)
T 1h6t_A          126 D-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALA  197 (291)
T ss_dssp             C-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGT
T ss_pred             C-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhc
Confidence            4 4 4688999999999999999865  578899999999999999997543  8999999999999999985 44 489


Q ss_pred             cCCCCCeEEccCCCC
Q 036300          234 EMVSLKEMVVSNNPI  248 (269)
Q Consensus       234 ~l~~L~~L~l~~N~l  248 (269)
                      .+++|+.|++++|++
T Consensus       198 ~l~~L~~L~l~~n~i  212 (291)
T 1h6t_A          198 GLKNLDVLELFSQEC  212 (291)
T ss_dssp             TCTTCSEEEEEEEEE
T ss_pred             cCCCCCEEECcCCcc
Confidence            999999999999998

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.83  E-value=3.2e-20  Score=148.46  Aligned_cols=148  Identities=18%  Similarity=0.274  Sum_probs=131.8

Q ss_pred             ccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCC
Q 036300          112 IDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLL  191 (269)
Q Consensus       112 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  191 (269)
                      ...+++|++|++++|.++ .+| .+..+++|++|++++|.++ .+ ..+..+++|++|++++|.+++..+..+..+++|+
T Consensus        40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  115 (197)
T 4ezg_A           40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT  115 (197)
T ss_dssp             HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred             hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence            477889999999999999 667 7899999999999999776 44 4788999999999999999987888899999999


Q ss_pred             EEeCcCCcCCCcCchhhcCCCCCCEEEccCCc-cCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300          192 KLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNN-FLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       192 ~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l  269 (269)
                      +|++++|++++..|..+..+++|++|++++|. ++ .++ .+..+++|++|++++|.+  ..++  .+..+++|+.|++
T Consensus       116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i--~~~~--~l~~l~~L~~L~l  188 (197)
T 4ezg_A          116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGV--HDYR--GIEDFPKLNQLYA  188 (197)
T ss_dssp             EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCC--CCCT--TGGGCSSCCEEEE
T ss_pred             EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCC--cChH--HhccCCCCCEEEe
Confidence            99999999998788899999999999999998 65 555 789999999999999999  4455  5788999999874

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.82  E-value=1.5e-19  Score=167.68  Aligned_cols=166  Identities=22%  Similarity=0.271  Sum_probs=127.1

Q ss_pred             cccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEE
Q 036300           67 QCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLA  146 (269)
Q Consensus        67 ~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  146 (269)
                      .+..+....+.+..+|.  +.. +++|+.|+|++| .+.+..+  +..+++|+.|+|++|.+.+ +| .+..+++|++|+
T Consensus        44 ~L~~L~l~~n~i~~l~~--l~~-l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~  115 (605)
T 1m9s_A           44 SIDQIIANNSDIKSVQG--IQY-LPNVTKLFLNGN-KLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLS  115 (605)
T ss_dssp             TCCCCBCTTCCCCCCTT--GGG-CTTCCEEECTTS-CCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEE
T ss_pred             CCCEEECcCCCCCCChH--Hcc-CCCCCEEEeeCC-CCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEE
Confidence            34444455555666663  334 488888888888 6766443  7888888888888888874 33 688888888888


Q ss_pred             ccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCC
Q 036300          147 LAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLG  226 (269)
Q Consensus       147 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~  226 (269)
                      |++|.+++ ++ .+..+++|+.|++++|.+++.  ..+..+++|+.|+|++|++.+..|  +..+++|+.|+|++|.+++
T Consensus       116 Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~  189 (605)
T 1m9s_A          116 LEHNGISD-IN-GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD  189 (605)
T ss_dssp             CTTSCCCC-CG-GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred             ecCCCCCC-Cc-cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC
Confidence            88888884 43 577888888888888888854  567788888888888888886544  7888888888888888875


Q ss_pred             cchhhhhcCCCCCeEEccCCCC
Q 036300          227 GLVGSIEEMVSLKEMVVSNNPI  248 (269)
Q Consensus       227 ~~~~~~~~l~~L~~L~l~~N~l  248 (269)
                      .  ..+..+++|+.|+|++|++
T Consensus       190 l--~~l~~l~~L~~L~L~~N~l  209 (605)
T 1m9s_A          190 L--RALAGLKNLDVLELFSQEC  209 (605)
T ss_dssp             C--GGGTTCTTCSEEECCSEEE
T ss_pred             C--hHHccCCCCCEEEccCCcC
Confidence            3  3578888888888888888

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.82  E-value=1.9e-20  Score=173.89  Aligned_cols=190  Identities=19%  Similarity=0.184  Sum_probs=153.8

Q ss_pred             EeCCCCCCCcccccccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCC
Q 036300           54 SIGPVYDNSLVCSQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLP  133 (269)
Q Consensus        54 ~l~~~~~~~~~~~~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p  133 (269)
                      ++..+|.+.-  ..++.+..+.|.+..||+..|.++ ++|++|+|++| .+.+..+.+|..+++|++|+|++|++++..+
T Consensus        42 ~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l-~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~  117 (635)
T 4g8a_A           42 NFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSF-PELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLAL  117 (635)
T ss_dssp             CCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTC-TTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECG
T ss_pred             CcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCC-CCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCcCCCCCH
Confidence            4555665321  346677777889999999888887 99999999999 7888777789999999999999999997666


Q ss_pred             CCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCc-hhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCC
Q 036300          134 IEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSG-SMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLH  212 (269)
Q Consensus       134 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~  212 (269)
                      ..|.++++|++|++++|++++..+..|+++++|++|++++|.+++ ..|..+..+++|++|++++|++++..+..+..+.
T Consensus       118 ~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~  197 (635)
T 4g8a_A          118 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH  197 (635)
T ss_dssp             GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH
T ss_pred             HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchh
Confidence            789999999999999999996666679999999999999999975 4578889999999999999999987777766544


Q ss_pred             C----CCEEEccCCccCCcchhhhhcCCCCCeEEccCCCC
Q 036300          213 N----VTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPI  248 (269)
Q Consensus       213 ~----L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  248 (269)
                      +    ...++++.|.++...+..+. ...+..+++.+|..
T Consensus       198 ~l~~~~~~~~ls~n~l~~i~~~~~~-~~~~~~l~l~~n~~  236 (635)
T 4g8a_A          198 QMPLLNLSLDLSLNPMNFIQPGAFK-EIRLHKLTLRNNFD  236 (635)
T ss_dssp             TCTTCCCEEECTTCCCCEECTTTTT-TCEEEEEEEESCCS
T ss_pred             hhhhhhhhhhcccCcccccCccccc-chhhhhhhhhcccc
Confidence            3    35788999988754444433 34556677777755

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.82  E-value=2.2e-19  Score=166.49  Aligned_cols=163  Identities=27%  Similarity=0.373  Sum_probs=140.0

Q ss_pred             cCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEE
Q 036300           90 ANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIF  169 (269)
Q Consensus        90 ~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  169 (269)
                      +++|+.|++++| .+.. ++ .+..+++|+.|+|++|.+.+..+  +..+++|+.|+|++|.++ .+| .+..+++|++|
T Consensus        42 L~~L~~L~l~~n-~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~-~l~~l~~L~~L  114 (605)
T 1m9s_A           42 LNSIDQIIANNS-DIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSL  114 (605)
T ss_dssp             HTTCCCCBCTTC-CCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC-CCT-TSTTCTTCCEE
T ss_pred             CCCCCEEECcCC-CCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC-CCh-hhccCCCCCEE
Confidence            389999999999 5654 44 58899999999999999996444  889999999999999998 445 68899999999


Q ss_pred             EccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCC
Q 036300          170 DLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIF  249 (269)
Q Consensus       170 ~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  249 (269)
                      ++++|.+++.  ..+..+++|+.|+|++|++++.  ..+..+++|+.|+|++|.+++..|  +..+++|+.|+|++|.+ 
T Consensus       115 ~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i-  187 (605)
T 1m9s_A          115 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI-  187 (605)
T ss_dssp             ECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC-
T ss_pred             EecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCC-
Confidence            9999999853  4588899999999999999864  568899999999999999997666  88999999999999999 


Q ss_pred             CCCCCccccccCcCCceecC
Q 036300          250 GGGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       250 ~~~~p~~~~~~l~~L~~L~l  269 (269)
                       ..++  .+..+++|+.|+|
T Consensus       188 -~~l~--~l~~l~~L~~L~L  204 (605)
T 1m9s_A          188 -SDLR--ALAGLKNLDVLEL  204 (605)
T ss_dssp             -CBCG--GGTTCTTCSEEEC
T ss_pred             -CCCh--HHccCCCCCEEEc
Confidence             4455  5888999999875

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.82  E-value=1e-21  Score=172.88  Aligned_cols=177  Identities=18%  Similarity=0.211  Sum_probs=119.1

Q ss_pred             CCccEEEccCCCCcee----ccCccccCCCCCCEEEcccCCCCCCCCCCC----CCC---------CCCCEEEccCCcCC
Q 036300           91 NSLDSLEFGSNPRLIG----TIPTSIDYLKNLQSLVLLEKGLTGKLPIEP----SKL---------VNLRRLALAGNQIN  153 (269)
Q Consensus        91 ~~L~~L~l~~n~~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~----~~l---------~~L~~L~L~~n~l~  153 (269)
                      ++|++|+|++| .+.+    .+|..+..+++|++|+|++|.+++..+..+    ..+         ++|++|++++|+++
T Consensus        94 ~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~  172 (386)
T 2ca6_A           94 PKLHTVRLSDN-AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE  172 (386)
T ss_dssp             TTCCEEECCSC-CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT
T ss_pred             CcccEEECCCC-cCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCC
Confidence            77888888888 6666    366677777888888888887764322222    233         77888888888776


Q ss_pred             -CCCc---cccCCCCCCCEEEccCCcCCc-----hhhhhhcCcccCCEEeCcCCcCC----CcCchhhcCCCCCCEEEcc
Q 036300          154 -GQIP---ASIGGLTKLLIFDLSRNNLSG-----SMLLTLGKLARLLKLDLSYNNLQ----EKIPKEIGNLHNVTFLDLR  220 (269)
Q Consensus       154 -~~~p---~~l~~l~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~ls~n~l~----~~~p~~~~~l~~L~~L~L~  220 (269)
                       +.++   ..+..+++|++|++++|.++.     ..+..+..+++|+.|++++|.++    ..+|..+..+++|++|+|+
T Consensus       173 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~  252 (386)
T 2ca6_A          173 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN  252 (386)
T ss_dssp             GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECT
T ss_pred             cHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECC
Confidence             3344   355667778888888887763     23336667777888888887775    4466667777778888888


Q ss_pred             CCccCCc----chhhhhc--CCCCCeEEccCCCCCCC----CCCccccccCcCCceecC
Q 036300          221 SNNFLGG----LVGSIEE--MVSLKEMVVSNNPIFGG----GLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       221 ~N~l~~~----~~~~~~~--l~~L~~L~l~~N~l~~~----~~p~~~~~~l~~L~~L~l  269 (269)
                      +|.+++.    ++..+..  +++|++|++++|.+ .+    .+|.....++++|++|++
T Consensus       253 ~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i-~~~g~~~l~~~l~~~l~~L~~L~l  310 (386)
T 2ca6_A          253 DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI-ELDAVRTLKTVIDEKMPDLLFLEL  310 (386)
T ss_dssp             TCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCC-BHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred             CCCCchhhHHHHHHHHhhccCCCeEEEECcCCcC-CHHHHHHHHHHHHhcCCCceEEEc
Confidence            8877754    4555533  77788888888877 33    255433356777777764

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.82  E-value=5.1e-19  Score=159.12  Aligned_cols=162  Identities=22%  Similarity=0.225  Sum_probs=83.5

Q ss_pred             cccccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCE
Q 036300           65 CSQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRR  144 (269)
Q Consensus        65 ~~~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  144 (269)
                      +.+++.+....+.+..+|   +.. +++|++|++++| .+.+. +  ++.+++|++|++++|.+++ +|  ++.+++|++
T Consensus        63 l~~L~~L~Ls~n~l~~~~---~~~-l~~L~~L~Ls~N-~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~  131 (457)
T 3bz5_A           63 LTGLTKLICTSNNITTLD---LSQ-NTNLTYLACDSN-KLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTY  131 (457)
T ss_dssp             CTTCSEEECCSSCCSCCC---CTT-CTTCSEEECCSS-CCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCE
T ss_pred             cCCCCEEEccCCcCCeEc---ccc-CCCCCEEECcCC-CCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCE
Confidence            334444444444444444   222 255555555555 44442 2  5555555555555555553 22  455555555


Q ss_pred             EEccCCcCCC---------------------CCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCc
Q 036300          145 LALAGNQING---------------------QIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEK  203 (269)
Q Consensus       145 L~L~~n~l~~---------------------~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~  203 (269)
                      |++++|.+++                     .+  .+..+++|++|++++|.+++ +|  +..+++|+.|++++|++++.
T Consensus       132 L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~  206 (457)
T 3bz5_A          132 LNCARNTLTEIDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL  206 (457)
T ss_dssp             EECTTSCCSCCCCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC
T ss_pred             EECCCCccceeccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee
Confidence            5555555553                     22  23444455555555555543 22  44555555555555555542


Q ss_pred             CchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCC
Q 036300          204 IPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPI  248 (269)
Q Consensus       204 ~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  248 (269)
                         .++.+++|++|++++|++++ +|  +..+++|++|++++|++
T Consensus       207 ---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l  245 (457)
T 3bz5_A          207 ---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPL  245 (457)
T ss_dssp             ---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCC
T ss_pred             ---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcC
Confidence               25555666666666666664 33  55566666666666666

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.82  E-value=8.4e-21  Score=163.58  Aligned_cols=175  Identities=17%  Similarity=0.186  Sum_probs=152.2

Q ss_pred             CCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCC-CCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEE
Q 036300           91 NSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGK-LPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIF  169 (269)
Q Consensus        91 ~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  169 (269)
                      +.++.|++++| .+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus        70 ~~l~~L~l~~n-~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L  147 (336)
T 2ast_B           70 QGVIAFRCPRS-FMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL  147 (336)
T ss_dssp             TTCSEEECTTC-EECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEE
T ss_pred             ccceEEEcCCc-cccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEE
Confidence            78999999999 67776554 66899999999999998865 77778999999999999999998888889999999999


Q ss_pred             EccCC-cCCch-hhhhhcCcccCCEEeCcCC-cCCCc-CchhhcCCC-CCCEEEccCC--ccC-CcchhhhhcCCCCCeE
Q 036300          170 DLSRN-NLSGS-MLLTLGKLARLLKLDLSYN-NLQEK-IPKEIGNLH-NVTFLDLRSN--NFL-GGLVGSIEEMVSLKEM  241 (269)
Q Consensus       170 ~l~~n-~l~~~-~~~~~~~l~~L~~L~ls~n-~l~~~-~p~~~~~l~-~L~~L~L~~N--~l~-~~~~~~~~~l~~L~~L  241 (269)
                      ++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|++|++++|  .++ +.++..+..+++|++|
T Consensus       148 ~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L  227 (336)
T 2ast_B          148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL  227 (336)
T ss_dssp             ECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEE
T ss_pred             ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEE
Confidence            99999 68763 6777889999999999999 88864 577788999 9999999999  566 4677888999999999


Q ss_pred             EccCCC-CCCCCCCccccccCcCCceecC
Q 036300          242 VVSNNP-IFGGGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       242 ~l~~N~-l~~~~~p~~~~~~l~~L~~L~l  269 (269)
                      ++++|. + ++..+. .+.++++|++|++
T Consensus       228 ~l~~~~~l-~~~~~~-~l~~l~~L~~L~l  254 (336)
T 2ast_B          228 DLSDSVML-KNDCFQ-EFFQLNYLQHLSL  254 (336)
T ss_dssp             ECTTCTTC-CGGGGG-GGGGCTTCCEEEC
T ss_pred             eCCCCCcC-CHHHHH-HHhCCCCCCEeeC
Confidence            999999 6 555554 7889999999975

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.81  E-value=3e-21  Score=182.76  Aligned_cols=201  Identities=23%  Similarity=0.203  Sum_probs=97.0

Q ss_pred             HHHHHHHHHHHhcccCCCCCCCCCC----CCCCCCCCCCceEeecCCCceEEEEEEeCCCCCCCcccccccccCCCCCCC
Q 036300            3 RKEKEALYSTIQGFVGKWWNGSDLY----PDPFGRTGLQGVSCDFFHGLWHVSAISIGPVYDNSLVCSQCKIFKPPLQSP   78 (269)
Q Consensus         3 ~~~~~~l~~~~~~~~~~~W~~~~~~----~~~C~~~~~~gv~C~~~~~~~~v~~l~l~~~~~~~~~~~~l~~~~~~~~~~   78 (269)
                      +.++++|++++.+..+..|+....+    ...+.|.   ++.+...    +++.+++..                  +..
T Consensus       131 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~~----~~~~l~L~~------------------n~~  185 (727)
T 4b8c_D          131 DCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTAT---NSAVSTP----LTPKIELFA------------------NGK  185 (727)
T ss_dssp             -CCCHHHHHHHHHHHHHHTTC-----------------------------------------------------------
T ss_pred             ccchhhhhhhhhhcccccCcccCCCcCCCCccccCC---CceecCC----ccceEEeeC------------------CCC
Confidence            5688999999999877555543221    1344565   7777653    566666610                  001


Q ss_pred             cccCchhHHhh---cCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCC
Q 036300           79 IEIPSSNWQKL---ANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQ  155 (269)
Q Consensus        79 ~~lp~~~~~~l---~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~  155 (269)
                      ..+|...+..+   -..+..+++..| .+. ..+..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .
T Consensus       186 ~~~~~~~l~~l~Ls~~~i~~~~~~~n-~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~  261 (727)
T 4b8c_D          186 DEANQALLQHKKLSQYSIDEDDDIEN-RMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-E  261 (727)
T ss_dssp             --------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-C
T ss_pred             CcchhhHhhcCccCcccccCcccccc-cee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-c
Confidence            11111111000   011222223333 222 33556666777777777777766 56666666777777777777776 6


Q ss_pred             CccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhc
Q 036300          156 IPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEE  234 (269)
Q Consensus       156 ~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  234 (269)
                      +|..|..+++|++|+|++|.++ .+|..|+.+++|++|+|++|.++ .+|..|+.+++|++|+|++|.+++.+|..+..
T Consensus       262 lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~  338 (727)
T 4b8c_D          262 LPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE  338 (727)
T ss_dssp             CCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred             cChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhh
Confidence            6666777777777777777776 55666777777777777777765 45666777777777777777777666665543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.81  E-value=1.4e-18  Score=156.35  Aligned_cols=170  Identities=19%  Similarity=0.205  Sum_probs=116.2

Q ss_pred             CCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcC
Q 036300           73 PPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQI  152 (269)
Q Consensus        73 ~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l  152 (269)
                      ...+.+..+| . +..+ ++|++|++++| .+.+. |  ++.+++|++|++++|.+++. +  ++.+++|++|++++|.+
T Consensus        49 Ls~n~l~~~~-~-l~~l-~~L~~L~Ls~n-~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l  118 (457)
T 3bz5_A           49 CHNSSITDMT-G-IEKL-TGLTKLICTSN-NITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKL  118 (457)
T ss_dssp             CCSSCCCCCT-T-GGGC-TTCSEEECCSS-CCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCC
T ss_pred             ccCCCcccCh-h-hccc-CCCCEEEccCC-cCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcC
Confidence            3334445566 2 3444 99999999999 67774 4  88999999999999999963 4  88999999999999999


Q ss_pred             CCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCC----------------------cCCCcCchhhcC
Q 036300          153 NGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYN----------------------NLQEKIPKEIGN  210 (269)
Q Consensus       153 ~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n----------------------~l~~~~p~~~~~  210 (269)
                      ++ +|  +..+++|++|++++|.+++. +  ++.+++|++|++++|                      ++++ +|  +..
T Consensus       119 ~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-l~--l~~  189 (457)
T 3bz5_A          119 TK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE-LD--VSQ  189 (457)
T ss_dssp             SC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC-CC--CTT
T ss_pred             Ce-ec--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce-ec--ccc
Confidence            95 55  88899999999999998863 2  445555555555555                      4443 22  444


Q ss_pred             CCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300          211 LHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       211 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l  269 (269)
                      +++|+.|++++|.+++.   .++.+++|++|++++|++ .+ +|   +..+++|++|++
T Consensus       190 l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l-~~-ip---~~~l~~L~~L~l  240 (457)
T 3bz5_A          190 NKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKL-TE-ID---VTPLTQLTYFDC  240 (457)
T ss_dssp             CTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCC-SC-CC---CTTCTTCSEEEC
T ss_pred             CCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcc-cc-cC---ccccCCCCEEEe
Confidence            45555555555555533   255566666666666666 22 44   456666666653

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.80  E-value=4.1e-19  Score=138.20  Aligned_cols=135  Identities=22%  Similarity=0.193  Sum_probs=81.0

Q ss_pred             CCCCEEEcccCCCC-CCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEe
Q 036300          116 KNLQSLVLLEKGLT-GKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLD  194 (269)
Q Consensus       116 ~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  194 (269)
                      ++|++|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            45555555555555 44555555555666666666655532  4455566666666666666554555555566666666


Q ss_pred             CcCCcCCCcC-chhhcCCCCCCEEEccCCccCCcch---hhhhcCCCCCeEEccCCCCCCCCCC
Q 036300          195 LSYNNLQEKI-PKEIGNLHNVTFLDLRSNNFLGGLV---GSIEEMVSLKEMVVSNNPIFGGGLN  254 (269)
Q Consensus       195 ls~n~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l~~N~l~~~~~p  254 (269)
                      +++|.+++.. +..+..+++|++|++++|.+++..+   ..+..+++|++|++++|.+  .++|
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~--~~~~  163 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED--QEAP  163 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS--CBCC
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh--hhcc
Confidence            6666666421 1456666777777777777665443   3666777777777777776  4444

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.80  E-value=2.2e-20  Score=163.11  Aligned_cols=199  Identities=20%  Similarity=0.183  Sum_probs=131.5

Q ss_pred             ccccCCCCCCCcccCc----hhHHhhcC-CccEEEccCCCCceeccCccccCC-----CCCCEEEcccCCCCCCCCCCC-
Q 036300           68 CKIFKPPLQSPIEIPS----SNWQKLAN-SLDSLEFGSNPRLIGTIPTSIDYL-----KNLQSLVLLEKGLTGKLPIEP-  136 (269)
Q Consensus        68 l~~~~~~~~~~~~lp~----~~~~~l~~-~L~~L~l~~n~~l~~~~p~~l~~l-----~~L~~L~L~~n~l~~~~p~~~-  136 (269)
                      +..+..+.+.++.++.    ..+..+ + +|++|++++| .+.+..+..+..+     ++|++|++++|.+++..+..+ 
T Consensus        24 L~~L~Ls~n~l~~~~~~~l~~~l~~~-~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~  101 (362)
T 3goz_A           24 VTSLDLSLNNLYSISTVELIQAFANT-PASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV  101 (362)
T ss_dssp             CCEEECTTSCGGGSCHHHHHHHHHTC-CTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred             ceEEEccCCCCChHHHHHHHHHHHhC-CCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence            3444444455666665    444444 5 7888888888 6777666666654     888888888888876555433 


Q ss_pred             ---CCC-CCCCEEEccCCcCCCCCcccc----CC-CCCCCEEEccCCcCCc----hhhhhhcCcc-cCCEEeCcCCcCCC
Q 036300          137 ---SKL-VNLRRLALAGNQINGQIPASI----GG-LTKLLIFDLSRNNLSG----SMLLTLGKLA-RLLKLDLSYNNLQE  202 (269)
Q Consensus       137 ---~~l-~~L~~L~L~~n~l~~~~p~~l----~~-l~~L~~L~l~~n~l~~----~~~~~~~~l~-~L~~L~ls~n~l~~  202 (269)
                         ..+ ++|++|++++|.+++..+..+    .. .++|++|++++|.+++    .++..+..++ +|++|++++|++++
T Consensus       102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~  181 (362)
T 3goz_A          102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS  181 (362)
T ss_dssp             HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred             HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence               333 788888888888875554433    33 3578888888888874    3344455555 88888888888876


Q ss_pred             cCchhh----cCC-CCCCEEEccCCccCCc----chhhhhc-CCCCCeEEccCCCCCCCCCC---ccccccCcCCceecC
Q 036300          203 KIPKEI----GNL-HNVTFLDLRSNNFLGG----LVGSIEE-MVSLKEMVVSNNPIFGGGLN---GIRWENLQNLEIWIF  269 (269)
Q Consensus       203 ~~p~~~----~~l-~~L~~L~L~~N~l~~~----~~~~~~~-l~~L~~L~l~~N~l~~~~~p---~~~~~~l~~L~~L~l  269 (269)
                      ..+..+    ... ++|++|+|++|.+++.    ++..+.. .++|++|++++|.+ .+..+   ...+..+++|+.|++
T Consensus       182 ~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l-~~~~~~~l~~~~~~l~~L~~L~L  260 (362)
T 3goz_A          182 KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCL-HGPSLENLKLLKDSLKHLQTVYL  260 (362)
T ss_dssp             SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCC-CCCCHHHHHHTTTTTTTCSEEEE
T ss_pred             hhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCC-CcHHHHHHHHHHhcCCCccEEEe
Confidence            655433    344 5888888888888752    4555555 35888888888888 33222   123456677777653

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.80  E-value=6.6e-19  Score=147.20  Aligned_cols=156  Identities=19%  Similarity=0.295  Sum_probs=130.7

Q ss_pred             CCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCC
Q 036300           76 QSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQ  155 (269)
Q Consensus        76 ~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~  155 (269)
                      +.+..++.  +..+ ++|++|++++| .+.. ++ .+..+++|++|++++|.+++. +. +..+++|++|++++|+++ .
T Consensus        29 ~~i~~~~~--~~~l-~~L~~L~l~~n-~i~~-l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l~-~   99 (263)
T 1xeu_A           29 QSVTDLVS--QKEL-SGVQNFNGDNS-NIQS-LA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRLK-N   99 (263)
T ss_dssp             SCTTSEEC--HHHH-TTCSEEECTTS-CCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCCS-C
T ss_pred             CCcccccc--hhhc-CcCcEEECcCC-Cccc-ch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCccC-C
Confidence            34455552  3454 99999999999 6654 55 688999999999999999954 44 899999999999999998 4


Q ss_pred             CccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcC
Q 036300          156 IPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEM  235 (269)
Q Consensus       156 ~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  235 (269)
                      +|.. .. ++|++|++++|.+++. + .+..+++|+.|++++|++++ ++ .+..+++|++|++++|.+++.  ..+..+
T Consensus       100 l~~~-~~-~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l  171 (263)
T 1xeu_A          100 LNGI-PS-ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT--GGLTRL  171 (263)
T ss_dssp             CTTC-CC-SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC--TTSTTC
T ss_pred             cCcc-cc-CcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch--HHhccC
Confidence            5543 33 8999999999999853 3 58899999999999999986 44 688999999999999999866  678899


Q ss_pred             CCCCeEEccCCCC
Q 036300          236 VSLKEMVVSNNPI  248 (269)
Q Consensus       236 ~~L~~L~l~~N~l  248 (269)
                      ++|++|++++|++
T Consensus       172 ~~L~~L~l~~N~~  184 (263)
T 1xeu_A          172 KKVNWIDLTGQKC  184 (263)
T ss_dssp             CCCCEEEEEEEEE
T ss_pred             CCCCEEeCCCCcc
Confidence            9999999999998

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.80  E-value=2e-19  Score=150.30  Aligned_cols=161  Identities=22%  Similarity=0.250  Sum_probs=136.4

Q ss_pred             CCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEE
Q 036300           91 NSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFD  170 (269)
Q Consensus        91 ~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  170 (269)
                      ..++.++++++ .+.+. + .+..+++|++|++++|.++ .++ .+..+++|++|++++|.+++ ++. +..+++|++|+
T Consensus        19 ~~l~~l~l~~~-~i~~~-~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~   91 (263)
T 1xeu_A           19 ANAVKQNLGKQ-SVTDL-V-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELS   91 (263)
T ss_dssp             HHHHHHHHTCS-CTTSE-E-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEE
T ss_pred             HHHHHHHhcCC-Ccccc-c-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEE
Confidence            56788899998 66654 3 5788999999999999998 566 78999999999999999994 454 89999999999


Q ss_pred             ccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCC
Q 036300          171 LSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFG  250 (269)
Q Consensus       171 l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  250 (269)
                      +++|++++ ++.. .. ++|+.|++++|++++ ++ .+..+++|+.|++++|++++. + .+..+++|++|++++|.+ .
T Consensus        92 L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i-~  163 (263)
T 1xeu_A           92 VNRNRLKN-LNGI-PS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEI-T  163 (263)
T ss_dssp             CCSSCCSC-CTTC-CC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCC-C
T ss_pred             CCCCccCC-cCcc-cc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcC-c
Confidence            99999985 4432 23 899999999999986 44 589999999999999999864 4 789999999999999999 3


Q ss_pred             CCCCccccccCcCCceecC
Q 036300          251 GGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       251 ~~~p~~~~~~l~~L~~L~l  269 (269)
                       .++  .+..+++|+.|++
T Consensus       164 -~~~--~l~~l~~L~~L~l  179 (263)
T 1xeu_A          164 -NTG--GLTRLKKVNWIDL  179 (263)
T ss_dssp             -BCT--TSTTCCCCCEEEE
T ss_pred             -chH--HhccCCCCCEEeC
Confidence             343  6888999998874

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.79  E-value=9.3e-19  Score=139.43  Aligned_cols=132  Identities=23%  Similarity=0.279  Sum_probs=116.0

Q ss_pred             cEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCC-CCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEcc
Q 036300           94 DSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPI-EPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLS  172 (269)
Q Consensus        94 ~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~  172 (269)
                      +++++++| .+ +.+|..+.  ++|++|++++|.+++..+. .+..+++|++|++++|.+++..|..|..+++|++|+++
T Consensus        11 ~~l~~s~~-~l-~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A           11 TTVDCTGR-GL-KEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTS-CC-SSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEcCCC-Cc-CcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence            78999999 55 56777665  3899999999999866554 48899999999999999998778899999999999999


Q ss_pred             CCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcch
Q 036300          173 RNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLV  229 (269)
Q Consensus       173 ~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~  229 (269)
                      +|++++..+..|..+++|++|++++|++++..|..+..+++|++|++++|.+++..+
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            999998888888999999999999999998888889999999999999999987544

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.79  E-value=5e-19  Score=137.75  Aligned_cols=134  Identities=26%  Similarity=0.258  Sum_probs=119.5

Q ss_pred             cCCccEEEccCCCCce-eccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCE
Q 036300           90 ANSLDSLEFGSNPRLI-GTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLI  168 (269)
Q Consensus        90 ~~~L~~L~l~~n~~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  168 (269)
                      +++|++|++++| .+. +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++
T Consensus        23 ~~~L~~L~l~~n-~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   99 (168)
T 2ell_A           23 PAAVRELVLDNC-KSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH   99 (168)
T ss_dssp             TTSCSEEECCSC-BCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred             cccCCEEECCCC-CCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence            478999999999 777 67898889999999999999999965  78999999999999999999778888888999999


Q ss_pred             EEccCCcCCchh-hhhhcCcccCCEEeCcCCcCCCcCc---hhhcCCCCCCEEEccCCccCC
Q 036300          169 FDLSRNNLSGSM-LLTLGKLARLLKLDLSYNNLQEKIP---KEIGNLHNVTFLDLRSNNFLG  226 (269)
Q Consensus       169 L~l~~n~l~~~~-~~~~~~l~~L~~L~ls~n~l~~~~p---~~~~~l~~L~~L~L~~N~l~~  226 (269)
                      |++++|.+++.. +..+..+++|+.|++++|.+++..+   ..+..+++|++|++++|.+..
T Consensus       100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A          100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence            999999998643 3788999999999999999997554   478999999999999999873

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.79  E-value=4.9e-19  Score=153.89  Aligned_cols=185  Identities=16%  Similarity=0.100  Sum_probs=148.0

Q ss_pred             CCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCC-CCCCCCCCCE-EEccCCcCCC
Q 036300           77 SPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPI-EPSKLVNLRR-LALAGNQING  154 (269)
Q Consensus        77 ~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~-L~L~~n~l~~  154 (269)
                      .+.+||..+    ++++++|+|++| .+....+..|..+++|++|+|++|.+.+.+|. .|.+++++++ +.+..|+++.
T Consensus        20 ~Lt~iP~~l----~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~   94 (350)
T 4ay9_X           20 KVTEIPSDL----PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY   94 (350)
T ss_dssp             TCCSCCTTC----CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCE
T ss_pred             CCCccCcCc----CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccc
Confidence            345677655    478999999999 77765556799999999999999998766654 6789998775 6677899996


Q ss_pred             CCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcC-CcCCCcCchhhcCCC-CCCEEEccCCccCCcchhhh
Q 036300          155 QIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSY-NNLQEKIPKEIGNLH-NVTFLDLRSNNFLGGLVGSI  232 (269)
Q Consensus       155 ~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~-n~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~~~~~  232 (269)
                      ..|..|..+++|++|++++|+++...+..+....++..+++.+ +++....+..+..+. .++.|++++|+|+. ++...
T Consensus        95 l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-i~~~~  173 (350)
T 4ay9_X           95 INPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSA  173 (350)
T ss_dssp             ECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTS
T ss_pred             cCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC-CChhh
Confidence            6678899999999999999999866666677777888999866 567654445566654 68999999999984 55444


Q ss_pred             hcCCCCCeEEccC-CCCCCCCCCccccccCcCCceecC
Q 036300          233 EEMVSLKEMVVSN-NPIFGGGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       233 ~~l~~L~~L~l~~-N~l~~~~~p~~~~~~l~~L~~L~l  269 (269)
                      ....+|+++++.+ |.+  +.+|...|..+++|+.|++
T Consensus       174 f~~~~L~~l~l~~~n~l--~~i~~~~f~~l~~L~~LdL  209 (350)
T 4ay9_X          174 FNGTQLDELNLSDNNNL--EELPNDVFHGASGPVILDI  209 (350)
T ss_dssp             STTEEEEEEECTTCTTC--CCCCTTTTTTEECCSEEEC
T ss_pred             ccccchhHHhhccCCcc--cCCCHHHhccCcccchhhc
Confidence            4567899999985 666  8888878999999999986

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.78  E-value=8.1e-19  Score=161.33  Aligned_cols=171  Identities=20%  Similarity=0.217  Sum_probs=141.3

Q ss_pred             cccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEE
Q 036300           67 QCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLA  146 (269)
Q Consensus        67 ~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  146 (269)
                      ++..+....+.+..||..+    .++|++|++++| .+. .+|   ..+++|++|++++|.+++ +|. +.+  +|++|+
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l----~~~L~~L~Ls~N-~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~  126 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNL----PPQITVLEITQN-ALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLD  126 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCC----CTTCSEEECCSS-CCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEE
T ss_pred             CccEEEeCCCCCCccCHhH----cCCCCEEECcCC-CCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEE
Confidence            5666766667777799876    378999999999 676 577   457999999999999996 777 665  999999


Q ss_pred             ccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCC
Q 036300          147 LAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLG  226 (269)
Q Consensus       147 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~  226 (269)
                      +++|.+++ +|.   .+++|++|++++|.+++ +|.   .+++|+.|++++|++++ +|. +.  ++|+.|+|++|+|+ 
T Consensus       127 Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-  193 (571)
T 3cvr_A          127 VDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-  193 (571)
T ss_dssp             CCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-
T ss_pred             CCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-
Confidence            99999995 776   68999999999999985 565   57899999999999997 677 65  89999999999998 


Q ss_pred             cchhhhhcCCCC-------CeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300          227 GLVGSIEEMVSL-------KEMVVSNNPIFGGGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       227 ~~~~~~~~l~~L-------~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l  269 (269)
                      .+|. +..  +|       +.|++++|.|  ..+|. .+..+++|+.|+|
T Consensus       194 ~lp~-~~~--~L~~~~~~L~~L~Ls~N~l--~~lp~-~l~~l~~L~~L~L  237 (571)
T 3cvr_A          194 SLPA-VPV--RNHHSEETEIFFRCRENRI--THIPE-NILSLDPTCTIIL  237 (571)
T ss_dssp             SCCC-CC----------CCEEEECCSSCC--CCCCG-GGGGSCTTEEEEC
T ss_pred             chhh-HHH--hhhcccccceEEecCCCcc--eecCH-HHhcCCCCCEEEe
Confidence            5665 553  77       9999999999  57887 5666999999875

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.78  E-value=9.3e-19  Score=133.49  Aligned_cols=127  Identities=23%  Similarity=0.222  Sum_probs=63.6

Q ss_pred             CCCCEEEcccCCCC-CCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEe
Q 036300          116 KNLQSLVLLEKGLT-GKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLD  194 (269)
Q Consensus       116 ~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  194 (269)
                      ++|+.|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            34444444444444 34444444444455555555544422  3344455555555555555544444444455555555


Q ss_pred             CcCCcCCCc-CchhhcCCCCCCEEEccCCccCCcch---hhhhcCCCCCeEEcc
Q 036300          195 LSYNNLQEK-IPKEIGNLHNVTFLDLRSNNFLGGLV---GSIEEMVSLKEMVVS  244 (269)
Q Consensus       195 ls~n~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l~  244 (269)
                      +++|++++. .+..+..+++|++|++++|.+++..+   ..+..+++|++|+++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            555555531 22445555555666665555554333   345556666665554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.78  E-value=4.8e-20  Score=162.15  Aligned_cols=203  Identities=19%  Similarity=0.172  Sum_probs=140.8

Q ss_pred             ccccccccCCCCCCCcccCchh----HHhhcCCccEEEccCC--CCceeccCccc-------cCCCCCCEEEcccCCCCC
Q 036300           64 VCSQCKIFKPPLQSPIEIPSSN----WQKLANSLDSLEFGSN--PRLIGTIPTSI-------DYLKNLQSLVLLEKGLTG  130 (269)
Q Consensus        64 ~~~~l~~~~~~~~~~~~lp~~~----~~~l~~~L~~L~l~~n--~~l~~~~p~~l-------~~l~~L~~L~L~~n~l~~  130 (269)
                      .+..+..+....+.++......    +.. +++|++|+|++|  ..+.+.+|..+       ..+++|++|+|++|.+++
T Consensus        30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~-~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~  108 (386)
T 2ca6_A           30 EDDSVKEIVLSGNTIGTEAARWLSENIAS-KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP  108 (386)
T ss_dssp             HCSCCCEEECTTSEECHHHHHHHHHTTTT-CTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred             cCCCccEEECCCCCCCHHHHHHHHHHHHh-CCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCH
Confidence            4455566655555444322211    223 378888888886  13445555544       678888888888888886


Q ss_pred             ----CCCCCCCCCCCCCEEEccCCcCCCCCccc----cCCC---------CCCCEEEccCCcCC-chhh---hhhcCccc
Q 036300          131 ----KLPIEPSKLVNLRRLALAGNQINGQIPAS----IGGL---------TKLLIFDLSRNNLS-GSML---LTLGKLAR  189 (269)
Q Consensus       131 ----~~p~~~~~l~~L~~L~L~~n~l~~~~p~~----l~~l---------~~L~~L~l~~n~l~-~~~~---~~~~~l~~  189 (269)
                          .+|..+..+++|++|++++|.+++..+..    +..+         ++|++|++++|+++ ..++   ..+..+++
T Consensus       109 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~  188 (386)
T 2ca6_A          109 TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL  188 (386)
T ss_dssp             TTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCC
Confidence                35666778888888888888886433333    3333         78889999988887 3444   45677888


Q ss_pred             CCEEeCcCCcCCC-----cCchhhcCCCCCCEEEccCCccC----CcchhhhhcCCCCCeEEccCCCCCCCC----CCcc
Q 036300          190 LLKLDLSYNNLQE-----KIPKEIGNLHNVTFLDLRSNNFL----GGLVGSIEEMVSLKEMVVSNNPIFGGG----LNGI  256 (269)
Q Consensus       190 L~~L~ls~n~l~~-----~~p~~~~~l~~L~~L~L~~N~l~----~~~~~~~~~l~~L~~L~l~~N~l~~~~----~p~~  256 (269)
                      |++|++++|+++.     ..|..+..+++|++|+|++|.++    ..+|..+..+++|++|++++|.+ .+.    ++. 
T Consensus       189 L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i-~~~~~~~l~~-  266 (386)
T 2ca6_A          189 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL-SARGAAAVVD-  266 (386)
T ss_dssp             CCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCC-CHHHHHHHHH-
T ss_pred             cCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCC-chhhHHHHHH-
Confidence            9999999998873     23336778889999999999886    46777888889999999999998 433    232 


Q ss_pred             cc--ccCcCCceecC
Q 036300          257 RW--ENLQNLEIWIF  269 (269)
Q Consensus       257 ~~--~~l~~L~~L~l  269 (269)
                      .+  .++++|+.|+|
T Consensus       267 ~l~~~~~~~L~~L~L  281 (386)
T 2ca6_A          267 AFSKLENIGLQTLRL  281 (386)
T ss_dssp             HHHTCSSCCCCEEEC
T ss_pred             HHhhccCCCeEEEEC
Confidence            33  33788888875

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.78  E-value=2e-18  Score=137.50  Aligned_cols=130  Identities=23%  Similarity=0.195  Sum_probs=112.8

Q ss_pred             cCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCc-cccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccC
Q 036300           71 FKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPT-SIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAG  149 (269)
Q Consensus        71 ~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~  149 (269)
                      +....+.+++||..+    ..++++|++++| .+.+..+. .+..+++|++|++++|.+++..|..|.++++|++|++++
T Consensus        13 l~~s~~~l~~ip~~~----~~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           13 VDCTGRGLKEIPRDI----PLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             EECTTSCCSSCCSCC----CTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             EEcCCCCcCcCccCC----CCCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            334445668888765    358999999999 67765554 489999999999999999988899999999999999999


Q ss_pred             CcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCc
Q 036300          150 NQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIP  205 (269)
Q Consensus       150 n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p  205 (269)
                      |++++..+..|..+++|++|++++|++++..|..+..+++|++|++++|.+.+..+
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            99997777789999999999999999998889999999999999999999987544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.78  E-value=3.1e-21  Score=177.74  Aligned_cols=195  Identities=18%  Similarity=0.142  Sum_probs=147.3

Q ss_pred             cccccccCCCCCCCcccCchhHHhhcCCccEEEccCCCC-------------ceeccCccccCCCCCCEEE-cccCCCCC
Q 036300           65 CSQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPR-------------LIGTIPTSIDYLKNLQSLV-LLEKGLTG  130 (269)
Q Consensus        65 ~~~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~-------------l~~~~p~~l~~l~~L~~L~-L~~n~l~~  130 (269)
                      +..+..+..+.+.+..||..+..  +++|+.|++++| .             ..+..|..++.+++|+.|+ ++.|.+..
T Consensus       348 ~~~L~~L~Ls~n~L~~Lp~~i~~--l~~L~~L~l~~n-~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~  424 (567)
T 1dce_A          348 DEQLFRCELSVEKSTVLQSELES--CKELQELEPENK-WCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD  424 (567)
T ss_dssp             TTTSSSCCCCHHHHHHHHHHHHH--HHHHHHHCTTCH-HHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             CccceeccCChhhHHhhHHHHHH--HHHHHHhccccc-hhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence            44444555555666777777632  477888887655 3             3455666677777777777 44443221


Q ss_pred             CCCC------CCCC--CCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCC
Q 036300          131 KLPI------EPSK--LVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQE  202 (269)
Q Consensus       131 ~~p~------~~~~--l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~  202 (269)
                       ++.      .+..  ...|++|++++|.++ .+|. +..+++|++|++++|.++ .+|..++.+++|+.|++++|++++
T Consensus       425 -L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~-~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~  500 (567)
T 1dce_A          425 -LRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN  500 (567)
T ss_dssp             -HHHHHHHHHHHHHHHHTTCSEEECTTSCCS-SCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC
T ss_pred             -hhhhhhhcccccccCccCceEEEecCCCCC-CCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC
Confidence             110      0000  125899999999999 5786 999999999999999999 789999999999999999999997


Q ss_pred             cCchhhcCCCCCCEEEccCCccCCcc-hhhhhcCCCCCeEEccCCCCCCCCCCc--cccccCcCCceecC
Q 036300          203 KIPKEIGNLHNVTFLDLRSNNFLGGL-VGSIEEMVSLKEMVVSNNPIFGGGLNG--IRWENLQNLEIWIF  269 (269)
Q Consensus       203 ~~p~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~p~--~~~~~l~~L~~L~l  269 (269)
                       +| .++.+++|+.|+|++|.+++.. |..++.+++|+.|++++|++ .+..|.  ..+..+|+|+.|++
T Consensus       501 -lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l-~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          501 -VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL-CQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             -CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGG-GGSSSCTTHHHHHCTTCSEEEC
T ss_pred             -Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcC-CCCccHHHHHHHHCcccCccCC
Confidence             67 7999999999999999999876 99999999999999999999 444332  13445899999875

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.78  E-value=2.8e-20  Score=162.40  Aligned_cols=188  Identities=20%  Similarity=0.243  Sum_probs=143.6

Q ss_pred             CCcccCchhHHhhcCCccEEEccCCCCceeccC----ccccCCC-CCCEEEcccCCCCCCCCCCCCCC-----CCCCEEE
Q 036300           77 SPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIP----TSIDYLK-NLQSLVLLEKGLTGKLPIEPSKL-----VNLRRLA  146 (269)
Q Consensus        77 ~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p----~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l-----~~L~~L~  146 (269)
                      ..|.+|...  ...++|++|++++| .+.+..+    ..+..++ +|++|++++|.+++..+..+..+     ++|++|+
T Consensus        10 ~~~~~~~~~--~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~   86 (362)
T 3goz_A           10 GSNPVEEFT--SIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLN   86 (362)
T ss_dssp             TCCHHHHHH--TSCTTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEE
T ss_pred             chHHHHHHH--hCCCCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEE
Confidence            344555533  44467999999999 6777655    6788888 99999999999997777666664     9999999


Q ss_pred             ccCCcCCCCCccc----cCCC-CCCCEEEccCCcCCchhhhhh----cC-cccCCEEeCcCCcCCCcCc----hhhcCCC
Q 036300          147 LAGNQINGQIPAS----IGGL-TKLLIFDLSRNNLSGSMLLTL----GK-LARLLKLDLSYNNLQEKIP----KEIGNLH  212 (269)
Q Consensus       147 L~~n~l~~~~p~~----l~~l-~~L~~L~l~~n~l~~~~~~~~----~~-l~~L~~L~ls~n~l~~~~p----~~~~~l~  212 (269)
                      +++|.+++..+..    +..+ ++|++|++++|.+++..+..+    .. .++|++|++++|++.+..+    ..+...+
T Consensus        87 Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~  166 (362)
T 3goz_A           87 LSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIP  166 (362)
T ss_dssp             CCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSC
T ss_pred             CcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCC
Confidence            9999999766654    3444 899999999999987666544    33 3699999999999986443    4445565


Q ss_pred             -CCCEEEccCCccCCcchhhhh----cC-CCCCeEEccCCCCCCCC----CCcccccc-CcCCceecC
Q 036300          213 -NVTFLDLRSNNFLGGLVGSIE----EM-VSLKEMVVSNNPIFGGG----LNGIRWEN-LQNLEIWIF  269 (269)
Q Consensus       213 -~L~~L~L~~N~l~~~~~~~~~----~l-~~L~~L~l~~N~l~~~~----~p~~~~~~-l~~L~~L~l  269 (269)
                       +|++|+|++|++++..+..+.    .+ ++|++|++++|.+ .+.    ++. .+.. .++|+.|++
T Consensus       167 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i-~~~~~~~l~~-~l~~~~~~L~~L~L  232 (362)
T 3goz_A          167 ANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLL-GLKSYAELAY-IFSSIPNHVVSLNL  232 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG-GGSCHHHHHH-HHHHSCTTCCEEEC
T ss_pred             ccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCC-ChhHHHHHHH-HHhcCCCCceEEEC
Confidence             999999999999877665444    44 6999999999999 332    333 3434 458988875

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.77  E-value=1.2e-18  Score=132.85  Aligned_cols=129  Identities=24%  Similarity=0.305  Sum_probs=115.3

Q ss_pred             cCCccEEEccCCCCce-eccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCE
Q 036300           90 ANSLDSLEFGSNPRLI-GTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLI  168 (269)
Q Consensus        90 ~~~L~~L~l~~n~~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  168 (269)
                      .++|+.|++++| .+. +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++
T Consensus        16 ~~~l~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   92 (149)
T 2je0_A           16 PSDVKELVLDNS-RSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH   92 (149)
T ss_dssp             GGGCSEEECTTC-BCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred             CccCeEEEccCC-cCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence            378999999999 787 68898899999999999999999965  78899999999999999999778888888999999


Q ss_pred             EEccCCcCCch-hhhhhcCcccCCEEeCcCCcCCCcCc---hhhcCCCCCCEEEccC
Q 036300          169 FDLSRNNLSGS-MLLTLGKLARLLKLDLSYNNLQEKIP---KEIGNLHNVTFLDLRS  221 (269)
Q Consensus       169 L~l~~n~l~~~-~~~~~~~l~~L~~L~ls~n~l~~~~p---~~~~~l~~L~~L~L~~  221 (269)
                      |++++|.+++. .+..+..+++|++|++++|.+++..+   ..+..+++|++|++++
T Consensus        93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            99999999864 45789999999999999999997655   4788999999999863

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.76  E-value=6.8e-18  Score=134.55  Aligned_cols=128  Identities=23%  Similarity=0.272  Sum_probs=108.6

Q ss_pred             cEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccC
Q 036300           94 DSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSR  173 (269)
Q Consensus        94 ~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~  173 (269)
                      +++++++| .+. .+|..+.  ++|++|++++|.++ .+|..+.++++|++|++++|.+++..+..|..+++|++|++++
T Consensus        13 ~~l~~~~~-~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           13 TVVRCSNK-GLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             TEEECTTS-CCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCC-CCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence            57889888 554 5676554  68999999999998 7788899999999999999999976677889999999999999


Q ss_pred             CcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCC
Q 036300          174 NNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLG  226 (269)
Q Consensus       174 n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~  226 (269)
                      |++++..+..|..+++|+.|++++|+++...+..+..+++|+.|++++|.+..
T Consensus        88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            99997777788899999999999999987555668889999999999998864

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.75  E-value=9.2e-19  Score=157.34  Aligned_cols=149  Identities=23%  Similarity=0.289  Sum_probs=90.2

Q ss_pred             ccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEcc
Q 036300           93 LDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLS  172 (269)
Q Consensus        93 L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~  172 (269)
                      +++|++++| .+.+ +|..   .++|++|++++|.+++ +|..   +++|++|++++|.++ .+|..   .++|++|+++
T Consensus        73 l~~L~l~~~-~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~~---~~~L~~L~L~  139 (454)
T 1jl5_A           73 AHELELNNL-GLSS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLK-ALSDL---PPLLEYLGVS  139 (454)
T ss_dssp             CSEEECTTS-CCSC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-CCCSC---CTTCCEEECC
T ss_pred             CCEEEecCC-cccc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccC-cccCC---CCCCCEEECc
Confidence            355555555 3433 2321   2456666666666664 4432   256666666666666 23321   1567777777


Q ss_pred             CCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCC
Q 036300          173 RNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGG  252 (269)
Q Consensus       173 ~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~  252 (269)
                      +|.+++ +| .++.+++|++|++++|++++ +|..   ..+|++|++++|.+++ +| .++.+++|++|++++|.+  ..
T Consensus       140 ~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l--~~  209 (454)
T 1jl5_A          140 NNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSL--KK  209 (454)
T ss_dssp             SSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCC--SS
T ss_pred             CCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcC--Cc
Confidence            777774 55 47777777777777777774 4543   2477777777777775 44 577777788888888877  33


Q ss_pred             CCccccccCcCCceec
Q 036300          253 LNGIRWENLQNLEIWI  268 (269)
Q Consensus       253 ~p~~~~~~l~~L~~L~  268 (269)
                      +|. .   .++|++|+
T Consensus       210 l~~-~---~~~L~~L~  221 (454)
T 1jl5_A          210 LPD-L---PLSLESIV  221 (454)
T ss_dssp             CCC-C---CTTCCEEE
T ss_pred             CCC-C---cCcccEEE
Confidence            553 1   23555554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.75  E-value=3.7e-17  Score=146.90  Aligned_cols=173  Identities=20%  Similarity=0.220  Sum_probs=124.4

Q ss_pred             cccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEE
Q 036300           67 QCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLA  146 (269)
Q Consensus        67 ~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  146 (269)
                      +++.+....+....+|..     .++|++|++++| .+.+ +|..   .++|++|++++|.+++ +| .++++++|++|+
T Consensus        92 ~L~~L~l~~n~l~~lp~~-----~~~L~~L~l~~n-~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~  159 (454)
T 1jl5_A           92 HLESLVASCNSLTELPEL-----PQSLKSLLVDNN-NLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIID  159 (454)
T ss_dssp             TCSEEECCSSCCSSCCCC-----CTTCCEEECCSS-CCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEE
T ss_pred             CCCEEEccCCcCCccccc-----cCCCcEEECCCC-ccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEE
Confidence            444454555555667753     267888888887 5554 3321   1678888888888885 66 588888888888


Q ss_pred             ccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCC
Q 036300          147 LAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLG  226 (269)
Q Consensus       147 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~  226 (269)
                      +++|+++ .+|..+   ++|++|++++|.+++ +| .++.+++|+.|++++|++++ +|..   .++|++|++++|.++ 
T Consensus       160 l~~N~l~-~lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-  228 (454)
T 1jl5_A          160 VDNNSLK-KLPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-  228 (454)
T ss_dssp             CCSSCCS-CCCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-
T ss_pred             CCCCcCc-ccCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-
Confidence            8888888 466543   478888888888885 55 57888888999998888875 4542   258889999999887 


Q ss_pred             cchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300          227 GLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       227 ~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l  269 (269)
                      .+| .++.+++|++|++++|++  ..+|. .   +++|++|++
T Consensus       229 ~lp-~~~~l~~L~~L~l~~N~l--~~l~~-~---~~~L~~L~l  264 (454)
T 1jl5_A          229 ELP-ELQNLPFLTTIYADNNLL--KTLPD-L---PPSLEALNV  264 (454)
T ss_dssp             SCC-CCTTCTTCCEEECCSSCC--SSCCS-C---CTTCCEEEC
T ss_pred             ccc-ccCCCCCCCEEECCCCcC--Ccccc-c---ccccCEEEC
Confidence            566 488889999999999988  44654 2   356666653

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.74  E-value=2.8e-17  Score=128.93  Aligned_cols=133  Identities=26%  Similarity=0.222  Sum_probs=109.7

Q ss_pred             ccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEcc
Q 036300           93 LDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLS  172 (269)
Q Consensus        93 L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~  172 (269)
                      .+.++++++ .+. .+|..+  .++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus         9 ~~~l~~~~~-~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A            9 GTEIRCNSK-GLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             TTEEECCSS-CCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCC-CCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence            478899888 554 456544  3789999999999996666678899999999999999985555667899999999999


Q ss_pred             CCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcch
Q 036300          173 RNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLV  229 (269)
Q Consensus       173 ~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~  229 (269)
                      +|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+
T Consensus        85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            999997767778889999999999999987555567889999999999999987654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.74  E-value=7.7e-17  Score=149.76  Aligned_cols=71  Identities=20%  Similarity=0.103  Sum_probs=51.6

Q ss_pred             ccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCcee
Q 036300          188 ARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIW  267 (269)
Q Consensus       188 ~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L  267 (269)
                      ++|+.|++++|++++ +|   ..+++|+.|++++|+++ .+|.   .+++|++|++++|.+  ..+|. .+.++++|+.|
T Consensus       221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L--~~lp~-~l~~l~~L~~L  289 (622)
T 3g06_A          221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQL--TRLPE-SLIHLSSETTV  289 (622)
T ss_dssp             TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCC--CSCCG-GGGGSCTTCEE
T ss_pred             CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCC--CcCCH-HHhhccccCEE
Confidence            556667777776664 44   34567788888888777 3443   567888899999988  47775 68888999888


Q ss_pred             cC
Q 036300          268 IF  269 (269)
Q Consensus       268 ~l  269 (269)
                      +|
T Consensus       290 ~L  291 (622)
T 3g06_A          290 NL  291 (622)
T ss_dssp             EC
T ss_pred             Ee
Confidence            75

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.74  E-value=1.4e-19  Score=162.43  Aligned_cols=174  Identities=14%  Similarity=0.078  Sum_probs=80.5

Q ss_pred             CccEEEccCCCCceec----cCccccCCCCCCEEEcccCCCCCCC-----CCCCCCCCCCCEEEccCCcCCCC----Ccc
Q 036300           92 SLDSLEFGSNPRLIGT----IPTSIDYLKNLQSLVLLEKGLTGKL-----PIEPSKLVNLRRLALAGNQINGQ----IPA  158 (269)
Q Consensus        92 ~L~~L~l~~n~~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~-----p~~~~~l~~L~~L~L~~n~l~~~----~p~  158 (269)
                      +|++|++++| .+.+.    ++..+..+++|++|++++|.+++..     +..+..+++|++|++++|.++..    ++.
T Consensus       200 ~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~  278 (461)
T 1z7x_W          200 QLEALKLESC-GVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR  278 (461)
T ss_dssp             CCCEEECTTS-CCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred             CceEEEccCC-CCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHH
Confidence            4555555555 34332    3444445555555555555554311     11122345555666665555532    344


Q ss_pred             ccCCCCCCCEEEccCCcCCchhhhhhcC-----cccCCEEeCcCCcCCCc----CchhhcCCCCCCEEEccCCccCCcch
Q 036300          159 SIGGLTKLLIFDLSRNNLSGSMLLTLGK-----LARLLKLDLSYNNLQEK----IPKEIGNLHNVTFLDLRSNNFLGGLV  229 (269)
Q Consensus       159 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~~  229 (269)
                      .+..+++|++|++++|.+++..+..+..     .++|+.|++++|.+++.    ++..+..+++|++|++++|.+++..+
T Consensus       279 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~  358 (461)
T 1z7x_W          279 VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV  358 (461)
T ss_dssp             HHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHH
T ss_pred             HHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccH
Confidence            4444555566666655554332222221     13455555555554432    23334444555555555555544333


Q ss_pred             hhhhc-----CCCCCeEEccCCCCCCC----CCCccccccCcCCceec
Q 036300          230 GSIEE-----MVSLKEMVVSNNPIFGG----GLNGIRWENLQNLEIWI  268 (269)
Q Consensus       230 ~~~~~-----l~~L~~L~l~~N~l~~~----~~p~~~~~~l~~L~~L~  268 (269)
                      ..+..     .++|++|++++|.+ ++    .++. .+..+++|++|+
T Consensus       359 ~~l~~~l~~~~~~L~~L~L~~n~i-~~~~~~~l~~-~l~~~~~L~~L~  404 (461)
T 1z7x_W          359 RELCQGLGQPGSVLRVLWLADCDV-SDSSCSSLAA-TLLANHSLRELD  404 (461)
T ss_dssp             HHHHHHHTSTTCCCCEEECTTSCC-CHHHHHHHHH-HHHHCCCCCEEE
T ss_pred             HHHHHHHcCCCCceEEEECCCCCC-ChhhHHHHHH-HHHhCCCccEEE
Confidence            33322     34555555555555 22    3332 344455555554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.73  E-value=8.5e-17  Score=126.14  Aligned_cols=125  Identities=24%  Similarity=0.213  Sum_probs=87.5

Q ss_pred             CCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCC
Q 036300           76 QSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQ  155 (269)
Q Consensus        76 ~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~  155 (269)
                      +.+.++|..+    .++|++|++++| .+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++.
T Consensus        17 ~~l~~~p~~~----~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~   91 (177)
T 2o6r_A           17 KGLTSVPTGI----PSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSL   91 (177)
T ss_dssp             SCCSSCCTTC----CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             CCCccCCCCC----CCCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCcccc
Confidence            4455666544    367778888877 56655555667777888888888877755555567777888888888887755


Q ss_pred             CccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCc
Q 036300          156 IPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIP  205 (269)
Q Consensus       156 ~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p  205 (269)
                      .+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..|
T Consensus        92 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           92 PNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            55556777788888888887775555556677778888888887776443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.72  E-value=5.7e-17  Score=129.21  Aligned_cols=123  Identities=20%  Similarity=0.237  Sum_probs=105.4

Q ss_pred             CCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCC
Q 036300           74 PLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQIN  153 (269)
Q Consensus        74 ~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~  153 (269)
                      ..+.+.++|..+    .++|++|++++| .+. .+|..|..+++|++|++++|.+++..+..|.++++|++|+|++|.++
T Consensus        18 ~~~~l~~ip~~~----~~~l~~L~L~~n-~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~   91 (193)
T 2wfh_A           18 SNKGLKVLPKGI----PRDVTELYLDGN-QFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR   91 (193)
T ss_dssp             TTSCCSSCCSCC----CTTCCEEECCSS-CCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCCCCcCCCCC----CCCCCEEECCCC-cCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC
Confidence            345567788765    468999999999 565 67888999999999999999999777788999999999999999999


Q ss_pred             CCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCC
Q 036300          154 GQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQE  202 (269)
Q Consensus       154 ~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~  202 (269)
                      +..|..|..+++|++|++++|.++...+..|..+++|+.|++++|.+..
T Consensus        92 ~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           92 CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            7777789999999999999999996666678889999999999998864

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.71  E-value=8.7e-19  Score=157.18  Aligned_cols=156  Identities=16%  Similarity=0.163  Sum_probs=77.6

Q ss_pred             CccEEEccCCCCcee----ccCccccCCCCCCEEEcccCCCCCCCCCCC-----CCCCCCCEEEccCCcCCCC----Ccc
Q 036300           92 SLDSLEFGSNPRLIG----TIPTSIDYLKNLQSLVLLEKGLTGKLPIEP-----SKLVNLRRLALAGNQINGQ----IPA  158 (269)
Q Consensus        92 ~L~~L~l~~n~~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~-----~~l~~L~~L~L~~n~l~~~----~p~  158 (269)
                      +|++|++++| .+..    .++..+..+++|++|++++|.+++..+..+     ...++|++|++++|.+++.    ++.
T Consensus        86 ~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~  164 (461)
T 1z7x_W           86 KIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS  164 (461)
T ss_dssp             CCCEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred             ceeEEEccCC-CCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHH
Confidence            4677777766 4553    345666666677777777666653222211     1234566666666665532    233


Q ss_pred             ccCCCCCCCEEEccCCcCCchhhhhhc-----CcccCCEEeCcCCcCCCc----CchhhcCCCCCCEEEccCCccCCcch
Q 036300          159 SIGGLTKLLIFDLSRNNLSGSMLLTLG-----KLARLLKLDLSYNNLQEK----IPKEIGNLHNVTFLDLRSNNFLGGLV  229 (269)
Q Consensus       159 ~l~~l~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~~  229 (269)
                      .+..+++|++|++++|.+++..+..+.     ..++|++|++++|.+++.    ++..+..+++|++|++++|.+++...
T Consensus       165 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~  244 (461)
T 1z7x_W          165 VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM  244 (461)
T ss_dssp             HHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred             HHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHH
Confidence            344455666666666655433332222     133555555555555432    23444445555555555555443211


Q ss_pred             -----hhhhcCCCCCeEEccCCCC
Q 036300          230 -----GSIEEMVSLKEMVVSNNPI  248 (269)
Q Consensus       230 -----~~~~~l~~L~~L~l~~N~l  248 (269)
                           ..+..+++|++|++++|.+
T Consensus       245 ~~l~~~~~~~~~~L~~L~L~~n~l  268 (461)
T 1z7x_W          245 AELCPGLLHPSSRLRTLWIWECGI  268 (461)
T ss_dssp             HHHHHHHTSTTCCCCEEECTTSCC
T ss_pred             HHHHHHHhcCCCCceEEECcCCCC
Confidence                 1111244555555555554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.71  E-value=2.3e-16  Score=146.58  Aligned_cols=174  Identities=24%  Similarity=0.259  Sum_probs=98.1

Q ss_pred             ccccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEE
Q 036300           66 SQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRL  145 (269)
Q Consensus        66 ~~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  145 (269)
                      .++..+....+.+..||..     +++|++|++++| .+.+ +|.   .+++|++|++++|.+++ +|.   .+++|++|
T Consensus        61 ~~L~~L~L~~N~l~~lp~~-----l~~L~~L~Ls~N-~l~~-lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L  126 (622)
T 3g06_A           61 AHITTLVIPDNNLTSLPAL-----PPELRTLEVSGN-QLTS-LPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKL  126 (622)
T ss_dssp             TTCSEEEECSCCCSCCCCC-----CTTCCEEEECSC-CCSC-CCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEE
T ss_pred             CCCcEEEecCCCCCCCCCc-----CCCCCEEEcCCC-cCCc-CCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEE
Confidence            4555555555667777762     478888888888 5553 554   56777777887777773 443   34555556


Q ss_pred             EccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhh---h--------------cCcccCCEEeCcCCcCCCcCchhh
Q 036300          146 ALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLT---L--------------GKLARLLKLDLSYNNLQEKIPKEI  208 (269)
Q Consensus       146 ~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~---~--------------~~l~~L~~L~ls~n~l~~~~p~~~  208 (269)
                      ++++|.++ .+|..   +++|++|++++|.+++ +|..   +              ..+++|+.|++++|++++ +|..+
T Consensus       127 ~L~~N~l~-~lp~~---l~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~-l~~~~  200 (622)
T 3g06_A          127 WIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS-LPTLP  200 (622)
T ss_dssp             ECCSSCCS-CCCCC---CTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCCCC
T ss_pred             ECCCCCCC-cCCCC---CCCCCEEECcCCcCCC-cCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC-CCCcc
Confidence            66555555 34432   2455555555555542 1111   1              112555666666665553 22211


Q ss_pred             c-----------------CCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300          209 G-----------------NLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       209 ~-----------------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l  269 (269)
                      .                 .+++|+.|++++|.+++ +|   ..+++|++|++++|.+  ..+|.    .+++|+.|++
T Consensus       201 ~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L--~~lp~----~~~~L~~L~L  268 (622)
T 3g06_A          201 SELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRL--TSLPM----LPSGLLSLSV  268 (622)
T ss_dssp             TTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCC--SCCCC----CCTTCCEEEC
T ss_pred             chhhEEECcCCcccccCCCCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCC--CcCCc----ccccCcEEeC
Confidence            1                 12556666666666664 33   3456677777777777  35554    4566666654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.70  E-value=1.4e-19  Score=144.79  Aligned_cols=150  Identities=23%  Similarity=0.268  Sum_probs=128.2

Q ss_pred             CCccEEEccCCCCceeccCc------cccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCC
Q 036300           91 NSLDSLEFGSNPRLIGTIPT------SIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLT  164 (269)
Q Consensus        91 ~~L~~L~l~~n~~l~~~~p~------~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~  164 (269)
                      ..++.++++.+ .+.+.+|.      .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..++
T Consensus        18 ~~l~~l~l~~~-~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~   93 (198)
T 1ds9_A           18 KSVVATEAEKV-ELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVAD   93 (198)
T ss_dssp             TCCCCTTCSEE-ECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHH
T ss_pred             ccccCcchhee-EeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCC
Confidence            67777777777 67777666      89999999999999999995 77 8899999999999999999 7888778889


Q ss_pred             CCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCc-hhhcCCCCCCEEEccCCccCCcchh----------hhh
Q 036300          165 KLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIP-KEIGNLHNVTFLDLRSNNFLGGLVG----------SIE  233 (269)
Q Consensus       165 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~~----------~~~  233 (269)
                      +|++|++++|.+++ +| .+..+++|++|++++|++++..+ ..+..+++|++|++++|.+++.+|.          .+.
T Consensus        94 ~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~  171 (198)
T 1ds9_A           94 TLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK  171 (198)
T ss_dssp             HCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHH
T ss_pred             cCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHH
Confidence            99999999999985 55 58889999999999999986322 4688999999999999999876554          378


Q ss_pred             cCCCCCeEEccCCCC
Q 036300          234 EMVSLKEMVVSNNPI  248 (269)
Q Consensus       234 ~l~~L~~L~l~~N~l  248 (269)
                      .+++|++|+  +|.+
T Consensus       172 ~l~~L~~Ld--~~~i  184 (198)
T 1ds9_A          172 RLPNLKKLD--GMPV  184 (198)
T ss_dssp             HCSSCSEEC--CGGG
T ss_pred             hCCCcEEEC--Cccc
Confidence            899999987  7777

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.70  E-value=7.8e-17  Score=126.34  Aligned_cols=130  Identities=15%  Similarity=0.124  Sum_probs=66.5

Q ss_pred             cCCCCCCEEEcccCCCCCCCCCCCCCCC-CCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCC
Q 036300          113 DYLKNLQSLVLLEKGLTGKLPIEPSKLV-NLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLL  191 (269)
Q Consensus       113 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  191 (269)
                      ..+++|+.|++++|.++ .+|. +..+. +|++|++++|.+++ + ..+..+++|++|++++|.+++..+..+..+++|+
T Consensus        16 ~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   91 (176)
T ss_dssp             ECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             CCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence            34455555555555555 2332 33332 55555555555552 2 3455555555555555555533233335555555


Q ss_pred             EEeCcCCcCCCcCch--hhcCCCCCCEEEccCCccCCcchh----hhhcCCCCCeEEccCCCC
Q 036300          192 KLDLSYNNLQEKIPK--EIGNLHNVTFLDLRSNNFLGGLVG----SIEEMVSLKEMVVSNNPI  248 (269)
Q Consensus       192 ~L~ls~n~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~l~~N~l  248 (269)
                      +|++++|++.. +|.  .+..+++|+.|++++|.++. +|.    .+..+++|++|++++|.+
T Consensus        92 ~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           92 ELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             EEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCH
T ss_pred             EEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCH
Confidence            55555555542 333  45555566666666665552 233    255566666666666554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.68  E-value=1.7e-17  Score=157.03  Aligned_cols=121  Identities=26%  Similarity=0.363  Sum_probs=75.1

Q ss_pred             CchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccC
Q 036300           82 PSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIG  161 (269)
Q Consensus        82 p~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~  161 (269)
                      |...|..+ +.|+.|+|++| .+. .+|..+..+++|++|+|++|.++ .+|..|+++++|++|+|++|.++ .+|..|.
T Consensus       216 ~~~~~~~l-~~L~~L~Ls~n-~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~  290 (727)
T 4b8c_D          216 PKDSKYDD-QLWHALDLSNL-QIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELG  290 (727)
T ss_dssp             ------CC-CCCCEEECTTS-CCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGG
T ss_pred             ChhhhccC-CCCcEEECCCC-CCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhc
Confidence            33333443 66667777666 444 45555556666777777777666 56666666666777777777666 5666666


Q ss_pred             CCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhh
Q 036300          162 GLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEI  208 (269)
Q Consensus       162 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~  208 (269)
                      .+++|++|+|++|.++ .+|..|+.+++|+.|+|++|.+++.+|..+
T Consensus       291 ~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~  336 (727)
T 4b8c_D          291 SCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKIL  336 (727)
T ss_dssp             GGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred             CCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence            6666777777766665 556566666667777777776666555544

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.66  E-value=1.8e-16  Score=124.19  Aligned_cols=129  Identities=21%  Similarity=0.187  Sum_probs=108.9

Q ss_pred             CCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCC
Q 036300          135 EPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNV  214 (269)
Q Consensus       135 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L  214 (269)
                      .+.++.+|++|++++|.++ .+|......++|++|++++|.+++.  ..+..+++|++|++++|++++..+..+..+++|
T Consensus        14 ~~~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   90 (176)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             hcCCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence            4567889999999999999 5665333345999999999999964  678899999999999999997555656899999


Q ss_pred             CEEEccCCccCCcchh--hhhcCCCCCeEEccCCCCCCCCCCcc---ccccCcCCceecC
Q 036300          215 TFLDLRSNNFLGGLVG--SIEEMVSLKEMVVSNNPIFGGGLNGI---RWENLQNLEIWIF  269 (269)
Q Consensus       215 ~~L~L~~N~l~~~~~~--~~~~l~~L~~L~l~~N~l~~~~~p~~---~~~~l~~L~~L~l  269 (269)
                      ++|++++|.++ .+|.  .+..+++|++|++++|++  ..+|..   .+..+++|+.|++
T Consensus        91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i--~~~~~~~~~~~~~l~~L~~Ld~  147 (176)
T 1a9n_A           91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPV--TNKKHYRLYVIYKVPQVRVLDF  147 (176)
T ss_dssp             CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGG--GGSTTHHHHHHHHCTTCSEETT
T ss_pred             CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCC--CCcHhHHHHHHHHCCccceeCC
Confidence            99999999997 4555  889999999999999999  566753   4889999999875

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.65  E-value=3.3e-19  Score=142.61  Aligned_cols=151  Identities=23%  Similarity=0.286  Sum_probs=128.6

Q ss_pred             ccCCCCCCEEEcccCCCCCCCCC------CCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhc
Q 036300          112 IDYLKNLQSLVLLEKGLTGKLPI------EPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLG  185 (269)
Q Consensus       112 l~~l~~L~~L~L~~n~l~~~~p~------~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~  185 (269)
                      +.....++.++++.+.+.+..|.      .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+.
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~   90 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA   90 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence            55667788888888888887776      78899999999999999994 77 8899999999999999998 6777788


Q ss_pred             CcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcch-hhhhcCCCCCeEEccCCCCCCCCCCc---------
Q 036300          186 KLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLV-GSIEEMVSLKEMVVSNNPIFGGGLNG---------  255 (269)
Q Consensus       186 ~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~p~---------  255 (269)
                      .+++|+.|++++|++++ +| .+..+++|++|++++|.+++..+ ..+..+++|++|++++|++ .+..|.         
T Consensus        91 ~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~~~  167 (198)
T 1ds9_A           91 VADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL-YNDYKENNATSEYRI  167 (198)
T ss_dssp             HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH-HHHHHTTTTHHHHHH
T ss_pred             cCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc-ccccccccchHHHHH
Confidence            88999999999999986 55 68889999999999999986433 5789999999999999999 554442         


Q ss_pred             cccccCcCCceec
Q 036300          256 IRWENLQNLEIWI  268 (269)
Q Consensus       256 ~~~~~l~~L~~L~  268 (269)
                      ..+..+++|+.|+
T Consensus       168 ~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          168 EVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHHCSSCSEEC
T ss_pred             HHHHhCCCcEEEC
Confidence            1377899999886

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.64  E-value=1.1e-15  Score=131.52  Aligned_cols=102  Identities=19%  Similarity=0.207  Sum_probs=89.3

Q ss_pred             CCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCC-EEEccCCccCCcchhhhhcCCCCCeE
Q 036300          163 LTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVT-FLDLRSNNFLGGLVGSIEEMVSLKEM  241 (269)
Q Consensus       163 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~-~L~L~~N~l~~~~~~~~~~l~~L~~L  241 (269)
                      +++|+.+++++|+++...+..|..+.+|+.+++..| +....+..|.++++|+ .+++.+ .++...+.+|.++++|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            678999999999998666678999999999999998 7766667899999999 999988 7776677899999999999


Q ss_pred             EccCCCCCCCCCCccccccCcCCceec
Q 036300          242 VVSNNPIFGGGLNGIRWENLQNLEIWI  268 (269)
Q Consensus       242 ~l~~N~l~~~~~p~~~~~~l~~L~~L~  268 (269)
                      ++++|.+  ..++...|.++++|+.++
T Consensus       303 ~l~~n~i--~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          303 LATGDKI--TTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EECSSCC--CEECTTTTCTTCCCCEEE
T ss_pred             EeCCCcc--CccchhhhcCCcchhhhc
Confidence            9999999  778888999999999886

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.63  E-value=2e-15  Score=139.06  Aligned_cols=158  Identities=21%  Similarity=0.264  Sum_probs=125.4

Q ss_pred             CCcccCchhHHhhcCCccEEE-ccCCCCceeccCc------cccC--CCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEc
Q 036300           77 SPIEIPSSNWQKLANSLDSLE-FGSNPRLIGTIPT------SIDY--LKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLAL  147 (269)
Q Consensus        77 ~~~~lp~~~~~~l~~~L~~L~-l~~n~~l~~~~p~------~l~~--l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  147 (269)
                      ..+.+|.. +..+ ++|+.|+ ++.| .+.. ++.      .+..  ...|+.|++++|.+++ +|. ++.+++|++|++
T Consensus       397 ~~~~~~~~-l~~l-~~L~~L~~l~~n-~~~~-L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~L  470 (567)
T 1dce_A          397 PLLYEKET-LQYF-STLKAVDPMRAA-YLDD-LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDL  470 (567)
T ss_dssp             TGGGHHHH-HHHH-HHHHHHCGGGHH-HHHH-HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEEC
T ss_pred             cccCCHHH-HHHH-HhcccCcchhhc-ccch-hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeec
Confidence            34444443 3454 7788888 4544 2211 110      0111  1358999999999995 776 999999999999


Q ss_pred             cCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcC-chhhcCCCCCCEEEccCCccCC
Q 036300          148 AGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKI-PKEIGNLHNVTFLDLRSNNFLG  226 (269)
Q Consensus       148 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~-p~~~~~l~~L~~L~L~~N~l~~  226 (269)
                      ++|.++ .+|..+..+++|++|++++|.+++ +| .++.+++|+.|++++|++++.. |..++.+++|+.|+|++|.+++
T Consensus       471 s~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~  547 (567)
T 1dce_A          471 SHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  547 (567)
T ss_dssp             CSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             Cccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence            999999 889999999999999999999996 67 8999999999999999999876 8999999999999999999987


Q ss_pred             cch---hhhhcCCCCCeEEc
Q 036300          227 GLV---GSIEEMVSLKEMVV  243 (269)
Q Consensus       227 ~~~---~~~~~l~~L~~L~l  243 (269)
                      .+|   ..+..+++|+.|++
T Consensus       548 ~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          548 EEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SSSCTTHHHHHCTTCSEEEC
T ss_pred             CccHHHHHHHHCcccCccCC
Confidence            644   23456899999875

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.61  E-value=8.7e-15  Score=114.08  Aligned_cols=104  Identities=25%  Similarity=0.277  Sum_probs=55.6

Q ss_pred             cEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccC
Q 036300           94 DSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSR  173 (269)
Q Consensus        94 ~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~  173 (269)
                      +++++++| .+.. +|..+.  ++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|..+++|++|++++
T Consensus        12 ~~l~~s~n-~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           12 TTVDCSGK-SLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TEEECTTS-CCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCC-CcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            45666665 3333 444332  5556666666666655455555566666666666665533333445555555555555


Q ss_pred             CcCCchhhhhhcCcccCCEEeCcCCcCC
Q 036300          174 NNLSGSMLLTLGKLARLLKLDLSYNNLQ  201 (269)
Q Consensus       174 n~l~~~~~~~~~~l~~L~~L~ls~n~l~  201 (269)
                      |++++..+..|..+++|+.|++++|.+.
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            5555443444555555555555555554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.60  E-value=5.1e-15  Score=115.40  Aligned_cols=109  Identities=26%  Similarity=0.241  Sum_probs=94.7

Q ss_pred             CCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCc
Q 036300          117 NLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLS  196 (269)
Q Consensus       117 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls  196 (269)
                      ..+.+++++|.++ .+|..+.  ++|++|++++|.+++..|..|..+++|++|++++|++++..+..|..+++|++|+++
T Consensus        10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            3578999999998 5777664  889999999999997778889999999999999999997777778899999999999


Q ss_pred             CCcCCCcCchhhcCCCCCCEEEccCCccCCcc
Q 036300          197 YNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGL  228 (269)
Q Consensus       197 ~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~  228 (269)
                      +|++++..+..+..+++|++|+|++|.++...
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence            99999766667889999999999999988653

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.58  E-value=1.1e-14  Score=113.91  Aligned_cols=107  Identities=24%  Similarity=0.250  Sum_probs=92.3

Q ss_pred             CCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcC
Q 036300          118 LQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSY  197 (269)
Q Consensus       118 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~  197 (269)
                      -+.+++++|+++ .+|..+.  ++|++|++++|++++..|..|..+++|++|++++|++++..+..|..+++|++|++++
T Consensus        14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            378999999997 7787664  8899999999999977788899999999999999999976666678899999999999


Q ss_pred             CcCCCcCchhhcCCCCCCEEEccCCccCCc
Q 036300          198 NNLQEKIPKEIGNLHNVTFLDLRSNNFLGG  227 (269)
Q Consensus       198 n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~  227 (269)
                      |++++..+..+..+++|++|+|++|.+...
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcccc
Confidence            999975555688999999999999998854

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.58  E-value=2.1e-14  Score=112.34  Aligned_cols=106  Identities=25%  Similarity=0.255  Sum_probs=92.7

Q ss_pred             ccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEcc
Q 036300           93 LDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLS  172 (269)
Q Consensus        93 L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~  172 (269)
                      -+.+++++| .+ +.+|..+.  ++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|..+++|++|+++
T Consensus        14 ~~~l~~~~n-~l-~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~   89 (174)
T 2r9u_A           14 QTLVNCQNI-RL-ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN   89 (174)
T ss_dssp             SSEEECCSS-CC-SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CcEEEeCCC-CC-CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence            378999999 55 56787665  899999999999998888899999999999999999996555567899999999999


Q ss_pred             CCcCCchhhhhhcCcccCCEEeCcCCcCCC
Q 036300          173 RNNLSGSMLLTLGKLARLLKLDLSYNNLQE  202 (269)
Q Consensus       173 ~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~  202 (269)
                      +|++++..+..|..+++|++|++++|.+..
T Consensus        90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             SSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             CCccceeCHHHhccccCCCEEEeCCCCccc
Confidence            999996666669999999999999999985

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.52  E-value=1e-15  Score=133.98  Aligned_cols=160  Identities=17%  Similarity=0.168  Sum_probs=122.4

Q ss_pred             hhcCCccEEEccCCCCceeccCccccC-----CCCCCEEEcccCCCCCCCCCCC-CCCCCCCEEEccCCcCCCCCcccc-
Q 036300           88 KLANSLDSLEFGSNPRLIGTIPTSIDY-----LKNLQSLVLLEKGLTGKLPIEP-SKLVNLRRLALAGNQINGQIPASI-  160 (269)
Q Consensus        88 ~l~~~L~~L~l~~n~~l~~~~p~~l~~-----l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~l-  160 (269)
                      ...+.|+.|++++| .+.......+..     .++|++|+|++|.++......+ ..+++|++|+|++|.++......+ 
T Consensus        69 ~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~  147 (372)
T 3un9_A           69 EVLSSLRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLR  147 (372)
T ss_dssp             HHHTTCCEEECTTS-CCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHH
T ss_pred             HHHhhCCEEEecCC-CCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHH
Confidence            34588999999999 676543333332     3799999999999875333233 346789999999999985433333 


Q ss_pred             ----CCCCCCCEEEccCCcCCch----hhhhhcCcccCCEEeCcCCcCCCc----CchhhcCCCCCCEEEccCCccCCc-
Q 036300          161 ----GGLTKLLIFDLSRNNLSGS----MLLTLGKLARLLKLDLSYNNLQEK----IPKEIGNLHNVTFLDLRSNNFLGG-  227 (269)
Q Consensus       161 ----~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~-  227 (269)
                          ...++|++|++++|.++..    ++..+...++|++|++++|.+.+.    ++..+...++|++|+|++|.+++. 
T Consensus       148 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g  227 (372)
T 3un9_A          148 DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA  227 (372)
T ss_dssp             HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHH
T ss_pred             HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHH
Confidence                3568899999999999753    445567889999999999998753    345667788999999999999863 


Q ss_pred             ---chhhhhcCCCCCeEEccCCCC
Q 036300          228 ---LVGSIEEMVSLKEMVVSNNPI  248 (269)
Q Consensus       228 ---~~~~~~~l~~L~~L~l~~N~l  248 (269)
                         +...+...++|++|++++|.+
T Consensus       228 ~~~l~~~L~~~~~L~~L~Ls~N~i  251 (372)
T 3un9_A          228 ALALARAAREHPSLELLHLYFNEL  251 (372)
T ss_dssp             HHHHHHHHHHCSSCCEEECTTSSC
T ss_pred             HHHHHHHHHhCCCCCEEeccCCCC
Confidence               445566789999999999999

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.48  E-value=4e-15  Score=137.39  Aligned_cols=152  Identities=10%  Similarity=0.013  Sum_probs=72.4

Q ss_pred             CCCCCCEEEcccCCCCCC----CCCCCCCCCCCCEEEccCCcCCC----CCccccCCCCCCCEEEccCCcCCchhhhhhc
Q 036300          114 YLKNLQSLVLLEKGLTGK----LPIEPSKLVNLRRLALAGNQING----QIPASIGGLTKLLIFDLSRNNLSGSMLLTLG  185 (269)
Q Consensus       114 ~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~  185 (269)
                      .+++|++|++++|.+++.    ++..+..+++|++|++++|.+++    .++..+..+++|++|++++|.+.+ ++..+.
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~  240 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFK  240 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHH
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHh
Confidence            445555555555554432    11122344555555555555541    222233445555555555555542 444455


Q ss_pred             CcccCCEEeCcCCcCC---CcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCc
Q 036300          186 KLARLLKLDLSYNNLQ---EKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQ  262 (269)
Q Consensus       186 ~l~~L~~L~ls~n~l~---~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~  262 (269)
                      .+++|+.|+++.....   ...+..+..+++|+.|+++++. ...+|..+..+++|++|++++|.+ .+......+..++
T Consensus       241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l-~~~~~~~~~~~~~  318 (592)
T 3ogk_B          241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALL-ETEDHCTLIQKCP  318 (592)
T ss_dssp             HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCC-CHHHHHHHHTTCT
T ss_pred             hhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcC-CHHHHHHHHHhCc
Confidence            5555555555432111   1112223334444444444432 224455566666777777777765 3322222345666


Q ss_pred             CCceec
Q 036300          263 NLEIWI  268 (269)
Q Consensus       263 ~L~~L~  268 (269)
                      +|+.|+
T Consensus       319 ~L~~L~  324 (592)
T 3ogk_B          319 NLEVLE  324 (592)
T ss_dssp             TCCEEE
T ss_pred             CCCEEe
Confidence            666654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.44  E-value=2.4e-14  Score=132.08  Aligned_cols=61  Identities=10%  Similarity=0.098  Sum_probs=28.5

Q ss_pred             CCccEEEccCCCCceec----cCccccCCCCCCEEEcccCCCCC----CCCCCCCCCCCCCEEEccCCcC
Q 036300           91 NSLDSLEFGSNPRLIGT----IPTSIDYLKNLQSLVLLEKGLTG----KLPIEPSKLVNLRRLALAGNQI  152 (269)
Q Consensus        91 ~~L~~L~l~~n~~l~~~----~p~~l~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~n~l  152 (269)
                      ++|++|++++| .+.+.    ++..+..+++|++|++++|.+++    .++..+.++++|++|++++|.+
T Consensus       164 ~~L~~L~L~~~-~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~  232 (592)
T 3ogk_B          164 RKIKTLLMEES-SFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI  232 (592)
T ss_dssp             TTCSEEECTTC-EEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG
T ss_pred             CCCCEEECccc-cccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH
Confidence            55666666655 44333    22233344555555555555541    1122233445555555555444

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.43  E-value=5.1e-13  Score=115.47  Aligned_cols=106  Identities=21%  Similarity=0.185  Sum_probs=92.1

Q ss_pred             CEEEcccC-CCCCCCCCCCCCCCCCCEEEccC-CcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCc
Q 036300          119 QSLVLLEK-GLTGKLPIEPSKLVNLRRLALAG-NQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLS  196 (269)
Q Consensus       119 ~~L~L~~n-~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls  196 (269)
                      ..++++++ +++ .+|. +..+++|++|+|++ |.+++..+..|..+++|++|+|++|++++..|..|..+++|+.|+|+
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            35688888 888 5888 99999999999996 99997666889999999999999999998888899999999999999


Q ss_pred             CCcCCCcCchhhcCCCCCCEEEccCCccCCc
Q 036300          197 YNNLQEKIPKEIGNLHNVTFLDLRSNNFLGG  227 (269)
Q Consensus       197 ~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~  227 (269)
                      +|++++..+..+..++ |+.|+|.+|.+...
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPLHCS  118 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence            9999975555565555 99999999999853

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.42  E-value=8.5e-13  Score=113.40  Aligned_cols=174  Identities=11%  Similarity=0.000  Sum_probs=130.4

Q ss_pred             cccccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCC----CCCCCCCC----
Q 036300           65 CSQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGL----TGKLPIEP----  136 (269)
Q Consensus        65 ~~~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l----~~~~p~~~----  136 (269)
                      |.++..+.... .+..|++..|.+. ++|+.|++++| .+....+.+|..+.++..+.+..+..    ......+|    
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~-~~L~~l~l~~n-~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~  176 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGC-DNLKICQIRKK-TAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE  176 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTC-TTCCEEEBCCS-SCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcC-cccceEEcCCC-CccccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence            56666665554 5667777777665 77888888877 56555556677666666665544211    00000001    


Q ss_pred             ----------------------------------------------CCCCCCCEEEccCCcCCCCCccccCCCCCCCEEE
Q 036300          137 ----------------------------------------------SKLVNLRRLALAGNQINGQIPASIGGLTKLLIFD  170 (269)
Q Consensus       137 ----------------------------------------------~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  170 (269)
                                                                    ..+++|+.+++++|+++..-+..|.++.+|+.++
T Consensus       177 ~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~  256 (329)
T 3sb4_A          177 PLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIK  256 (329)
T ss_dssp             CCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEE
T ss_pred             ccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEE
Confidence                                                          0278999999999999944456899999999999


Q ss_pred             ccCCcCCchhhhhhcCcccCC-EEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEc
Q 036300          171 LSRNNLSGSMLLTLGKLARLL-KLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVV  243 (269)
Q Consensus       171 l~~n~l~~~~~~~~~~l~~L~-~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l  243 (269)
                      +.+| ++...+.+|.++.+|+ .+++.. .++...+..|.++++|+.+++++|.++...+.+|.++++|+.+..
T Consensus       257 l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          257 LPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             CCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             CCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            9998 7766677899999999 999998 777667789999999999999999999777889999999998864

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.42  E-value=8.3e-13  Score=114.11  Aligned_cols=106  Identities=23%  Similarity=0.181  Sum_probs=90.8

Q ss_pred             cEEEccCCCCceeccCccccCCCCCCEEEccc-CCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEcc
Q 036300           94 DSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLE-KGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLS  172 (269)
Q Consensus        94 ~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~  172 (269)
                      ..++.++++.+ ..+|. +..+++|+.|+|++ |.+++..+..|.++++|++|+|++|++++..|..|..+++|++|+|+
T Consensus        11 ~~v~~~~~n~l-~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGAL-DSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCC-TTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCC-CccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            35688776234 45888 99999999999996 99997777889999999999999999998888889999999999999


Q ss_pred             CCcCCchhhhhhcCcccCCEEeCcCCcCCC
Q 036300          173 RNNLSGSMLLTLGKLARLLKLDLSYNNLQE  202 (269)
Q Consensus       173 ~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~  202 (269)
                      +|++++..+..+..++ |+.|++.+|.+..
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            9999966556666555 9999999999974

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.39  E-value=7.5e-12  Score=110.49  Aligned_cols=192  Identities=11%  Similarity=0.098  Sum_probs=118.4

Q ss_pred             cccccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCE
Q 036300           65 CSQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRR  144 (269)
Q Consensus        65 ~~~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  144 (269)
                      |.++..+....+.+..||...|.  ...|+.+.+..+  +...-..+|..+++|+.+++..+ ++..-..+|.+ .+|+.
T Consensus       179 c~~L~~l~l~~n~l~~I~~~aF~--~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~  252 (401)
T 4fdw_A          179 CYNLKKADLSKTKITKLPASTFV--YAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITT  252 (401)
T ss_dssp             CTTCCEEECTTSCCSEECTTTTT--TCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSE
T ss_pred             cccCCeeecCCCcceEechhhEe--ecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccE
Confidence            34444433333344444444444  244555555432  33333345555666666666553 33233334444 55666


Q ss_pred             EEccCCcCCCCCccccCCCCCCCEEEccCCcCC-----chhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEc
Q 036300          145 LALAGNQINGQIPASIGGLTKLLIFDLSRNNLS-----GSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDL  219 (269)
Q Consensus       145 L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L  219 (269)
                      +.+. +.++..-...|.+|++|+.+.+.+|.+.     ...+..|..+++|+.+.+.. .++......|.++++|+.+.+
T Consensus       253 i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~l  330 (401)
T 4fdw_A          253 VKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTI  330 (401)
T ss_dssp             EEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEE
T ss_pred             EEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEE
Confidence            6663 3344233567788888888888877664     34456788888888888884 466555677888889999998


Q ss_pred             cCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCc-CCceec
Q 036300          220 RSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQ-NLEIWI  268 (269)
Q Consensus       220 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~-~L~~L~  268 (269)
                      ..| ++.....+|.++ +|+.+++.+|.+  ..++...|..++ .++.|.
T Consensus       331 p~~-l~~I~~~aF~~~-~L~~l~l~~n~~--~~l~~~~F~~~~~~l~~l~  376 (401)
T 4fdw_A          331 PAN-VTQINFSAFNNT-GIKEVKVEGTTP--PQVFEKVWYGFPDDITVIR  376 (401)
T ss_dssp             CTT-CCEECTTSSSSS-CCCEEEECCSSC--CBCCCSSCCCSCTTCCEEE
T ss_pred             Ccc-ccEEcHHhCCCC-CCCEEEEcCCCC--cccccccccCCCCCccEEE
Confidence            554 665666788888 899999999887  555555677774 555554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.38  E-value=1.4e-14  Score=133.72  Aligned_cols=176  Identities=16%  Similarity=0.144  Sum_probs=97.9

Q ss_pred             cCCccEEEccCCCCceecc-CccccCCCCCCEEEcccCCCCCC-CCCCCCC-----------------------------
Q 036300           90 ANSLDSLEFGSNPRLIGTI-PTSIDYLKNLQSLVLLEKGLTGK-LPIEPSK-----------------------------  138 (269)
Q Consensus        90 ~~~L~~L~l~~n~~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~-~p~~~~~-----------------------------  138 (269)
                      +++|++|++++| .+.+.. +..+..+++|+.|++++| ++.. ++.....                             
T Consensus       288 ~~~L~~L~L~~~-~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~  365 (594)
T 2p1m_B          288 CSRLTTLNLSYA-TVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV  365 (594)
T ss_dssp             HTTCCEEECTTC-CCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHH
T ss_pred             hCCCCEEEccCC-CCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHH
Confidence            377888888888 455432 223456677777777766 2211 1101112                             


Q ss_pred             -----CCCCCEEEccCCcCCCCCccccC-CCCCCCEEEcc--C----CcCCc-----hhhhhhcCcccCCEEeCcCCcCC
Q 036300          139 -----LVNLRRLALAGNQINGQIPASIG-GLTKLLIFDLS--R----NNLSG-----SMLLTLGKLARLLKLDLSYNNLQ  201 (269)
Q Consensus       139 -----l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~l~--~----n~l~~-----~~~~~~~~l~~L~~L~ls~n~l~  201 (269)
                           +++|++|.+..|.+++..+..+. .+++|++|+++  +    +.+++     .++..+..+++|+.|++++ .++
T Consensus       366 ~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~  444 (594)
T 2p1m_B          366 SVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLT  444 (594)
T ss_dssp             HHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCC
T ss_pred             HHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-ccc
Confidence                 34444444444444433222232 35666666666  2    33431     1222344556666666655 454


Q ss_pred             CcCchhhcC-CCCCCEEEccCCccCCcchhhh-hcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300          202 EKIPKEIGN-LHNVTFLDLRSNNFLGGLVGSI-EEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       202 ~~~p~~~~~-l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l  269 (269)
                      +..+..+.. +++|+.|++++|.+++..+..+ ..+++|++|++++|.+ ++.........+++|++|++
T Consensus       445 ~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l  513 (594)
T 2p1m_B          445 DKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWM  513 (594)
T ss_dssp             HHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEE
T ss_pred             HHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEee
Confidence            433344443 6778888888888776544444 6678888888888888 44333334456777877764

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.37  E-value=6.5e-12  Score=110.87  Aligned_cols=180  Identities=10%  Similarity=0.053  Sum_probs=100.7

Q ss_pred             CcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCc
Q 036300           78 PIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIP  157 (269)
Q Consensus        78 ~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p  157 (269)
                      +..|+...|.+  ..|+.+.+.++  +...-+.+|..+++|+.+++..|.++.....+|. +.+|+.+.+..+ ++..-.
T Consensus       146 i~~I~~~aF~~--~~L~~i~lp~~--l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~  219 (401)
T 4fdw_A          146 LKSIGDMAFFN--STVQEIVFPST--LEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGS  219 (401)
T ss_dssp             CCEECTTTTTT--CCCCEEECCTT--CCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECT
T ss_pred             ccEECHHhcCC--CCceEEEeCCC--ccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehh
Confidence            45566666554  35666666543  3444445666666677777766666533223333 455555555533 332223


Q ss_pred             cccCCCCCCCEEEccCC---------------------cCCchhhhhhcCcccCCEEeCcCCcCC-----CcCchhhcCC
Q 036300          158 ASIGGLTKLLIFDLSRN---------------------NLSGSMLLTLGKLARLLKLDLSYNNLQ-----EKIPKEIGNL  211 (269)
Q Consensus       158 ~~l~~l~~L~~L~l~~n---------------------~l~~~~~~~~~~l~~L~~L~ls~n~l~-----~~~p~~~~~l  211 (269)
                      .+|.++++|+.+++..+                     .++.....+|..+++|+.+.+.+|.+.     ...+..|.++
T Consensus       220 ~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c  299 (401)
T 4fdw_A          220 QAFLKTSQLKTIEIPENVSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGC  299 (401)
T ss_dssp             TTTTTCTTCCCEECCTTCCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTC
T ss_pred             hHhhCCCCCCEEecCCCccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCC
Confidence            34555555555555432                     233233455666667777776666553     2334556667


Q ss_pred             CCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceec
Q 036300          212 HNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWI  268 (269)
Q Consensus       212 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~  268 (269)
                      ++|+.+.+. +.++.....+|.++.+|+.+.+..| +  ..+....|.++ +|+.++
T Consensus       300 ~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l--~~I~~~aF~~~-~L~~l~  351 (401)
T 4fdw_A          300 PKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-V--TQINFSAFNNT-GIKEVK  351 (401)
T ss_dssp             TTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-C--CEECTTSSSSS-CCCEEE
T ss_pred             ccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-c--cEEcHHhCCCC-CCCEEE
Confidence            777777776 3455455566777777777777444 4  44555566666 666654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.36  E-value=7.8e-14  Score=128.69  Aligned_cols=84  Identities=19%  Similarity=0.221  Sum_probs=38.7

Q ss_pred             CCccEEEccCCCCceeccCcccc-CCCCCCEEEcccC-CCCCC-CCCCCCCCCCCCEEEccCCcCCCCCcccc----CCC
Q 036300           91 NSLDSLEFGSNPRLIGTIPTSID-YLKNLQSLVLLEK-GLTGK-LPIEPSKLVNLRRLALAGNQINGQIPASI----GGL  163 (269)
Q Consensus        91 ~~L~~L~l~~n~~l~~~~p~~l~-~l~~L~~L~L~~n-~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~l----~~l  163 (269)
                      ++|++|++++| .+.+..+..+. .+++|++|++++| .++.. ++..+.++++|++|++++|.+++..+..+    ..+
T Consensus       105 ~~L~~L~L~~~-~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~  183 (594)
T 2p1m_B          105 TWLEEIRLKRM-VVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY  183 (594)
T ss_dssp             TTCCEEEEESC-BCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred             CCCCeEEeeCc-EEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence            55555555555 44444443333 3555555555555 22211 22222345555555555555443222222    234


Q ss_pred             CCCCEEEccCCc
Q 036300          164 TKLLIFDLSRNN  175 (269)
Q Consensus       164 ~~L~~L~l~~n~  175 (269)
                      ++|++|++++|.
T Consensus       184 ~~L~~L~l~~~~  195 (594)
T 2p1m_B          184 TSLVSLNISCLA  195 (594)
T ss_dssp             CCCCEEECTTCC
T ss_pred             CcCcEEEecccC
Confidence            455555555554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.35  E-value=5.7e-14  Score=122.88  Aligned_cols=157  Identities=15%  Similarity=0.198  Sum_probs=114.9

Q ss_pred             CCccEEEccCCCCceeccCccc-cCCCCCCEEEcccCCCCCCCCCCC-----CCCCCCCEEEccCCcCCC----CCcccc
Q 036300           91 NSLDSLEFGSNPRLIGTIPTSI-DYLKNLQSLVLLEKGLTGKLPIEP-----SKLVNLRRLALAGNQING----QIPASI  160 (269)
Q Consensus        91 ~~L~~L~l~~n~~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~~-----~~l~~L~~L~L~~n~l~~----~~p~~l  160 (269)
                      +.|++|+|++| .+.+.....+ ..+++|++|+|++|.++......+     ...++|++|+|++|.++.    .++..+
T Consensus       101 ~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L  179 (372)
T 3un9_A          101 HALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL  179 (372)
T ss_dssp             SCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred             CCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH
Confidence            58999999999 6765433333 346789999999999975333333     346789999999999874    244556


Q ss_pred             CCCCCCCEEEccCCcCCchh----hhhhcCcccCCEEeCcCCcCCCc----CchhhcCCCCCCEEEccCCccCCcchhhh
Q 036300          161 GGLTKLLIFDLSRNNLSGSM----LLTLGKLARLLKLDLSYNNLQEK----IPKEIGNLHNVTFLDLRSNNFLGGLVGSI  232 (269)
Q Consensus       161 ~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~~~~~  232 (269)
                      ..+++|++|++++|.+++..    +..+...++|+.|++++|.+++.    ++..+...++|++|+|++|.|++.....+
T Consensus       180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L  259 (372)
T 3un9_A          180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL  259 (372)
T ss_dssp             HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred             hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence            78899999999999997543    55677788999999999999863    33445567899999999999987666666


Q ss_pred             hcCCC-----CCeEE--ccCCCC
Q 036300          233 EEMVS-----LKEMV--VSNNPI  248 (269)
Q Consensus       233 ~~l~~-----L~~L~--l~~N~l  248 (269)
                      ..+..     |+.+.  +..|.+
T Consensus       260 ~~~~~~~~~~L~~l~~ll~~~~~  282 (372)
T 3un9_A          260 RDLGGAAEGGARVVVSLTEGTAV  282 (372)
T ss_dssp             HHCC------CEEECCCC----C
T ss_pred             HHHhcCCCccchhhHhhhcCCcc
Confidence            55432     55555  555555

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.04  E-value=1.7e-10  Score=100.27  Aligned_cols=135  Identities=14%  Similarity=0.135  Sum_probs=58.6

Q ss_pred             cccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccC--CCCCCCEEEccC--CcCCc-----hhh
Q 036300          111 SIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIG--GLTKLLIFDLSR--NNLSG-----SML  181 (269)
Q Consensus       111 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~l~~--n~l~~-----~~~  181 (269)
                      .+..+|+|+.|++++|.-. .++. + .+++|+.|++..+.++......+.  .+++|++|+|+.  |...+     .+.
T Consensus       167 ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~  243 (362)
T 2ra8_A          167 VLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR  243 (362)
T ss_dssp             HHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred             HHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence            3345556666666555211 1222 2 245556666555554422222222  455555555532  11100     001


Q ss_pred             hhh--cCcccCCEEeCcCCcCCCcCchhhc---CCCCCCEEEccCCccCCc----chhhhhcCCCCCeEEccCCCC
Q 036300          182 LTL--GKLARLLKLDLSYNNLQEKIPKEIG---NLHNVTFLDLRSNNFLGG----LVGSIEEMVSLKEMVVSNNPI  248 (269)
Q Consensus       182 ~~~--~~l~~L~~L~ls~n~l~~~~p~~~~---~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~N~l  248 (269)
                      ..+  ..+++|+.|++.+|.+.+..+..+.   .+++|++|+|+.|.+.+.    ++..+..+++|+.|++++|.+
T Consensus       244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i  319 (362)
T 2ra8_A          244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL  319 (362)
T ss_dssp             GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred             HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence            111  1345555555555555432222222   344555555555555442    222223445555555555555

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.94  E-value=1e-09  Score=95.45  Aligned_cols=152  Identities=16%  Similarity=0.238  Sum_probs=107.8

Q ss_pred             cCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCC--CCCCCCCEEEccC--CcCCCC-----Ccccc
Q 036300           90 ANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEP--SKLVNLRRLALAG--NQINGQ-----IPASI  160 (269)
Q Consensus        90 ~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~L~~--n~l~~~-----~p~~l  160 (269)
                      +++|+.|++++| .-. .++. +. +++|++|+|..+.++......+  ..+++|+.|+|+.  +...+.     +...+
T Consensus       171 ~P~L~~L~L~g~-~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l  246 (362)
T 2ra8_A          171 MPLLNNLKIKGT-NNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF  246 (362)
T ss_dssp             CTTCCEEEEECC-BTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS
T ss_pred             CCCCcEEEEeCC-CCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHH
Confidence            489999999988 211 2343 43 8999999999988764332233  3789999999863  221111     11223


Q ss_pred             --CCCCCCCEEEccCCcCCchhhhhhc---CcccCCEEeCcCCcCCCcC----chhhcCCCCCCEEEccCCccCCcchhh
Q 036300          161 --GGLTKLLIFDLSRNNLSGSMLLTLG---KLARLLKLDLSYNNLQEKI----PKEIGNLHNVTFLDLRSNNFLGGLVGS  231 (269)
Q Consensus       161 --~~l~~L~~L~l~~n~l~~~~~~~~~---~l~~L~~L~ls~n~l~~~~----p~~~~~l~~L~~L~L~~N~l~~~~~~~  231 (269)
                        ..+++|++|++.+|.+.+..+..+.   .+++|++|+++.|.+.+..    +..+..+++|+.|++++|.++...-..
T Consensus       247 ~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~  326 (362)
T 2ra8_A          247 SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKE  326 (362)
T ss_dssp             CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHH
T ss_pred             hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHH
Confidence              3579999999999999765544443   5789999999999988643    333456789999999999998765556


Q ss_pred             hhc-CCCCCeEEccCCC
Q 036300          232 IEE-MVSLKEMVVSNNP  247 (269)
Q Consensus       232 ~~~-l~~L~~L~l~~N~  247 (269)
                      +.. +  ...++++.++
T Consensus       327 l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          327 LQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHHHC--CSEEECCSBC
T ss_pred             HHHHc--CCEEEecCCc
Confidence            664 3  4678998887

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.88  E-value=1.3e-09  Score=85.81  Aligned_cols=120  Identities=10%  Similarity=0.096  Sum_probs=57.5

Q ss_pred             CccccCCCCCCEEEcccC-CCCCC----CCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhh
Q 036300          109 PTSIDYLKNLQSLVLLEK-GLTGK----LPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLT  183 (269)
Q Consensus       109 p~~l~~l~~L~~L~L~~n-~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~  183 (269)
                      ...+...+.|++|+|++| .+...    +...+...++|++|+|++|.+...-..                    .+...
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~--------------------~l~~~   88 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAF--------------------ALAEM   88 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHH--------------------HHHHH
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHH--------------------HHHHH
Confidence            344555666777777766 65521    122233344455555555544421000                    11222


Q ss_pred             hcCcccCCEEeCcCCcCCCc----CchhhcCCCCCCEEEc--cCCccCCc----chhhhhcCCCCCeEEccCCCC
Q 036300          184 LGKLARLLKLDLSYNNLQEK----IPKEIGNLHNVTFLDL--RSNNFLGG----LVGSIEEMVSLKEMVVSNNPI  248 (269)
Q Consensus       184 ~~~l~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~L--~~N~l~~~----~~~~~~~l~~L~~L~l~~N~l  248 (269)
                      +...+.|++|++++|.+.+.    +...+...++|++|+|  ++|.+...    +.+.+...++|++|++++|.+
T Consensus        89 L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A           89 LKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence            33334555555555555432    2233444455666666  55655542    233444456666666666665

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.79  E-value=1.2e-09  Score=85.96  Aligned_cols=89  Identities=11%  Similarity=0.153  Sum_probs=56.8

Q ss_pred             cCCccEEEccCCCCceec----cCccccCCCCCCEEEcccCCCCCC----CCCCCCCCCCCCEEEccCCcCCCC----Cc
Q 036300           90 ANSLDSLEFGSNPRLIGT----IPTSIDYLKNLQSLVLLEKGLTGK----LPIEPSKLVNLRRLALAGNQINGQ----IP  157 (269)
Q Consensus        90 ~~~L~~L~l~~n~~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~p  157 (269)
                      .+.|++|+|++|+.+...    +...+...++|++|+|++|.+...    +...+...++|++|+|++|.+...    +.
T Consensus        35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~  114 (185)
T 1io0_A           35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV  114 (185)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence            478999999998334432    445677789999999999998742    222334456677777777766632    23


Q ss_pred             cccCCCCCCCEEEc--cCCcCCc
Q 036300          158 ASIGGLTKLLIFDL--SRNNLSG  178 (269)
Q Consensus       158 ~~l~~l~~L~~L~l--~~n~l~~  178 (269)
                      ..+...++|++|++  ++|.+..
T Consensus       115 ~~L~~n~~L~~L~L~~~~N~i~~  137 (185)
T 1io0_A          115 EALQSNTSLIELRIDNQSQPLGN  137 (185)
T ss_dssp             HGGGGCSSCCEEECCCCSSCCCH
T ss_pred             HHHHhCCCceEEEecCCCCCCCH
Confidence            34444455555555  5555543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.76  E-value=1.6e-09  Score=89.93  Aligned_cols=63  Identities=29%  Similarity=0.372  Sum_probs=28.8

Q ss_pred             CCCCCCEEEccCCcCCc--hhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCC--CCCEEEccCCccCC
Q 036300          162 GLTKLLIFDLSRNNLSG--SMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLH--NVTFLDLRSNNFLG  226 (269)
Q Consensus       162 ~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~--~L~~L~L~~N~l~~  226 (269)
                      ++++|++|++++|++++  .++..+..+++|+.|+|++|++++.  ..+..+.  +|++|+|++|.+.+
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~  234 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCD  234 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGG
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcc
Confidence            34455555555555544  2233344455555555555555432  1122222  45555555555443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.71  E-value=1.5e-07  Score=82.46  Aligned_cols=101  Identities=11%  Similarity=0.134  Sum_probs=53.1

Q ss_pred             cCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCC
Q 036300          160 IGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLK  239 (269)
Q Consensus       160 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  239 (269)
                      |..+.+|+.+.+..+ ++.....+|.++.+|+.+++..+ ++.....+|.++.+|+.+.+..+ ++..-..+|.++.+|+
T Consensus       293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~  369 (394)
T 4fs7_A          293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLK  369 (394)
T ss_dssp             TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCC
T ss_pred             ccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCC
Confidence            445555555555433 33233445566666666666533 44333455666666666666544 4434445666666666


Q ss_pred             eEEccCCCCCCCCCCccccccCcCCcee
Q 036300          240 EMVVSNNPIFGGGLNGIRWENLQNLEIW  267 (269)
Q Consensus       240 ~L~l~~N~l~~~~~p~~~~~~l~~L~~L  267 (269)
                      .+++..+ +  ..+. ..|.++++|+.+
T Consensus       370 ~i~lp~~-~--~~~~-~~F~~c~~L~~I  393 (394)
T 4fs7_A          370 KVELPKR-L--EQYR-YDFEDTTKFKWI  393 (394)
T ss_dssp             EEEEEGG-G--GGGG-GGBCTTCEEEEE
T ss_pred             EEEECCC-C--EEhh-heecCCCCCcEE
Confidence            6666544 2  1222 245566665543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.55  E-value=1.1e-07  Score=78.81  Aligned_cols=80  Identities=20%  Similarity=0.309  Sum_probs=39.5

Q ss_pred             CcccCCEEeCcCCcCCC--cCchhhcCCCCCCEEEccCCccCCcchhhhhcCC--CCCeEEccCCCCCCCCCCc------
Q 036300          186 KLARLLKLDLSYNNLQE--KIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMV--SLKEMVVSNNPIFGGGLNG------  255 (269)
Q Consensus       186 ~l~~L~~L~ls~n~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~--~L~~L~l~~N~l~~~~~p~------  255 (269)
                      ++++|+.|+|++|++++  .+|..+..+++|+.|+|++|.|++.  ..+..+.  +|++|++++|++ .+.+|.      
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl-~~~~~~~~~y~~  244 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSL-CDTFRDQSTYIS  244 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTT-GGGCSSHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcC-ccccCcchhHHH
Confidence            44555666666665554  2234444555566666666655543  1222222  555566666655 333331      


Q ss_pred             cccccCcCCceec
Q 036300          256 IRWENLQNLEIWI  268 (269)
Q Consensus       256 ~~~~~l~~L~~L~  268 (269)
                      ..+..+|+|+.||
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence            1344555555554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.46  E-value=2.9e-06  Score=74.32  Aligned_cols=191  Identities=12%  Similarity=0.009  Sum_probs=141.2

Q ss_pred             ccccccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCC
Q 036300           64 VCSQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLR  143 (269)
Q Consensus        64 ~~~~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~  143 (269)
                      .|.++..+...- .+..|+...|.+. ..|+.+.+..+.   ..+.........|+.+.+.... +......+.++..|+
T Consensus       183 ~c~~L~~i~l~~-~~~~I~~~~F~~~-~~L~~i~~~~~~---~~i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~  256 (394)
T 4fs7_A          183 GCGKLKSIKLPR-NLKIIRDYCFAEC-ILLENMEFPNSL---YYLGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLE  256 (394)
T ss_dssp             TCTTCCBCCCCT-TCCEECTTTTTTC-TTCCBCCCCTTC---CEECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCC
T ss_pred             CCCCceEEEcCC-CceEeCchhhccc-cccceeecCCCc---eEeehhhcccCCCceEEECCCc-eecccccccccccce
Confidence            567776654432 2567777777764 889999887772   2233344456789999887553 324456788999999


Q ss_pred             EEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCc
Q 036300          144 RLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNN  223 (269)
Q Consensus       144 ~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~  223 (269)
                      .+.+..+... .....|..+..++.+....+.+.   ...|..+.+|+.+.+..+ ++.....+|.++.+|+.+++..+ 
T Consensus       257 ~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-  330 (394)
T 4fs7_A          257 SISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-  330 (394)
T ss_dssp             EEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-
T ss_pred             eEEcCCCcce-eeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-
Confidence            9999887554 45567888999999888765443   346778899999999765 55455677889999999999654 


Q ss_pred             cCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300          224 FLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       224 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l  269 (269)
                      ++..-..+|.++.+|+.+++..+ +  ..+....|.+|++|+.+++
T Consensus       331 v~~I~~~aF~~c~~L~~i~lp~~-l--~~I~~~aF~~C~~L~~i~l  373 (394)
T 4fs7_A          331 VEEIGKRSFRGCTSLSNINFPLS-L--RKIGANAFQGCINLKKVEL  373 (394)
T ss_dssp             CCEECTTTTTTCTTCCEECCCTT-C--CEECTTTBTTCTTCCEEEE
T ss_pred             ccEEhHHhccCCCCCCEEEECcc-c--cEehHHHhhCCCCCCEEEE
Confidence            66555678999999999999877 6  5677778999999998764

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.43  E-value=5.9e-06  Score=72.29  Aligned_cols=103  Identities=10%  Similarity=0.082  Sum_probs=49.9

Q ss_pred             cCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCC
Q 036300          160 IGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLK  239 (269)
Q Consensus       160 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  239 (269)
                      |..+..|+.+.+..+..+ .....|.+++.|+.+.+. +.++......|.++.+|+.+.+..+ ++..-..+|.++.+|+
T Consensus       261 F~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~  337 (394)
T 4gt6_A          261 FDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLE  337 (394)
T ss_dssp             TTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred             eeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCC
Confidence            445555555555443221 223344555555555553 2233333344555556666655433 3333344555556666


Q ss_pred             eEEccCCCCCCCCCCccccccCcCCceec
Q 036300          240 EMVVSNNPIFGGGLNGIRWENLQNLEIWI  268 (269)
Q Consensus       240 ~L~l~~N~l~~~~~p~~~~~~l~~L~~L~  268 (269)
                      .+.+..+ +  ..+....|.+|++|+.++
T Consensus       338 ~i~ip~s-v--~~I~~~aF~~C~~L~~i~  363 (394)
T 4gt6_A          338 RIAIPSS-V--TKIPESAFSNCTALNNIE  363 (394)
T ss_dssp             EEEECTT-C--CBCCGGGGTTCTTCCEEE
T ss_pred             EEEECcc-c--CEEhHhHhhCCCCCCEEE
Confidence            6655433 3  344444555555555543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.40  E-value=3.2e-07  Score=71.03  Aligned_cols=84  Identities=14%  Similarity=0.192  Sum_probs=48.9

Q ss_pred             CCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCc-CCchhhhhhcCc----ccCCEEeCcCCc-CCCcCchhhcCCCC
Q 036300          140 VNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNN-LSGSMLLTLGKL----ARLLKLDLSYNN-LQEKIPKEIGNLHN  213 (269)
Q Consensus       140 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l----~~L~~L~ls~n~-l~~~~p~~~~~l~~  213 (269)
                      .+|+.||++++.++..--..+..+++|++|++++|. +++..-..+..+    ++|++|++++|. +++..-..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            356666666666654433445666667777777664 554444445443    356777776663 55433344556666


Q ss_pred             CCEEEccCCc
Q 036300          214 VTFLDLRSNN  223 (269)
Q Consensus       214 L~~L~L~~N~  223 (269)
                      |++|+++++.
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            7777776664

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.39  E-value=2.5e-07  Score=71.65  Aligned_cols=93  Identities=13%  Similarity=0.145  Sum_probs=73.7

Q ss_pred             CccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCc-CCCcCchhhcCC----CCCCEEEccCCc-cCCcch
Q 036300          156 IPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNN-LQEKIPKEIGNL----HNVTFLDLRSNN-FLGGLV  229 (269)
Q Consensus       156 ~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~-l~~~~p~~~~~l----~~L~~L~L~~N~-l~~~~~  229 (269)
                      +|.....-..|++|+++++.++...-..+..+++|+.|+|++|. +++..-..+..+    ++|++|+|++|. +|+.--
T Consensus        53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl  132 (176)
T 3e4g_A           53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI  132 (176)
T ss_dssp             SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred             CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence            34433333479999999999987767778899999999999995 776444556654    479999999985 887666


Q ss_pred             hhhhcCCCCCeEEccCCCC
Q 036300          230 GSIEEMVSLKEMVVSNNPI  248 (269)
Q Consensus       230 ~~~~~l~~L~~L~l~~N~l  248 (269)
                      ..+..+++|++|++++++-
T Consensus       133 ~~L~~~~~L~~L~L~~c~~  151 (176)
T 3e4g_A          133 IALHHFRNLKYLFLSDLPG  151 (176)
T ss_dssp             HHGGGCTTCCEEEEESCTT
T ss_pred             HHHhcCCCCCEEECCCCCC
Confidence            7788999999999999974

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.37  E-value=6.3e-06  Score=72.14  Aligned_cols=126  Identities=7%  Similarity=0.020  Sum_probs=91.8

Q ss_pred             CCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCC
Q 036300          134 IEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHN  213 (269)
Q Consensus       134 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~  213 (269)
                      .+|.++.+|+.+.+.++..+ .-...|.++++|+.+.+. +.++......|.++.+|+.+.+..+ ++.....+|.++.+
T Consensus       259 ~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~  335 (394)
T 4gt6_A          259 HAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ  335 (394)
T ss_dssp             TTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred             ceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence            45677888999988766543 445678889999999996 4555455668889999999999765 55555678899999


Q ss_pred             CCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceec
Q 036300          214 VTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWI  268 (269)
Q Consensus       214 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~  268 (269)
                      |+.+.+..+ ++..-..+|.++.+|+.+++.++.. .  .  ..+..+.+|+.+.
T Consensus       336 L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~-~--~--~~~~~~~~L~~i~  384 (394)
T 4gt6_A          336 LERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS-Q--W--NAISTDSGLQNLP  384 (394)
T ss_dssp             CCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH-H--H--HTCBCCCCC----
T ss_pred             CCEEEECcc-cCEEhHhHhhCCCCCCEEEECCcee-e--h--hhhhccCCCCEEE
Confidence            999999654 6656677899999999999998764 1  1  2445566666654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.33  E-value=1.8e-05  Score=68.65  Aligned_cols=104  Identities=12%  Similarity=0.086  Sum_probs=47.8

Q ss_pred             ccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCC
Q 036300          159 SIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSL  238 (269)
Q Consensus       159 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  238 (269)
                      .+..+..|+.+.+..+ ++......|..+.+|+.+.+..+ +.......|.++++|+.+.+.++.++.....+|.++.+|
T Consensus       235 ~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L  312 (379)
T 4h09_A          235 AFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL  312 (379)
T ss_dssp             TTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred             cccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCC
Confidence            3444455555555433 22222334444455555554332 222222344555555555555555543334455555555


Q ss_pred             CeEEccCCCCCCCCCCccccccCcCCcee
Q 036300          239 KEMVVSNNPIFGGGLNGIRWENLQNLEIW  267 (269)
Q Consensus       239 ~~L~l~~N~l~~~~~p~~~~~~l~~L~~L  267 (269)
                      +.+.+..+ +  ..+....|.+|++|+.+
T Consensus       313 ~~i~lp~~-l--~~I~~~aF~~C~~L~~i  338 (379)
T 4h09_A          313 SSVTLPTA-L--KTIQVYAFKNCKALSTI  338 (379)
T ss_dssp             CEEECCTT-C--CEECTTTTTTCTTCCCC
T ss_pred             CEEEcCcc-c--cEEHHHHhhCCCCCCEE
Confidence            55555432 3  33444445555555544

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.27  E-value=1.4e-05  Score=69.48  Aligned_cols=147  Identities=13%  Similarity=0.096  Sum_probs=100.1

Q ss_pred             cccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccC
Q 036300          111 SIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARL  190 (269)
Q Consensus       111 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  190 (269)
                      .+....+|+.+.+..+ +......++.++..|+.+.+..+ ++..-...|.++.+|+.+.+..+ +.......|..+.+|
T Consensus       212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L  288 (379)
T 4h09_A          212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL  288 (379)
T ss_dssp             TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred             ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence            3445566666666544 33244556778888888888765 44233456778888888888654 443445678888899


Q ss_pred             CEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCC
Q 036300          191 LKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNL  264 (269)
Q Consensus       191 ~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L  264 (269)
                      +.+.+..+.++......|.++.+|+.+.+..+ ++..-..+|.++.+|+.+.+..+ +  ..+....|.+++.+
T Consensus       289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v--~~I~~~aF~~c~~~  358 (379)
T 4h09_A          289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-I--TLIESGAFEGSSIT  358 (379)
T ss_dssp             CEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-C--CEECTTTTTTSSCC
T ss_pred             ccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-c--CEEchhHhhCCCCC
Confidence            99999888887666677888899999998654 55455668888888888888654 4  34444455555433

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.81  E-value=2.3e-05  Score=61.71  Aligned_cols=42  Identities=12%  Similarity=0.169  Sum_probs=21.3

Q ss_pred             ccCCCCCCEEEcccC-CCCCC----CCCCCCCCCCCCEEEccCCcCC
Q 036300          112 IDYLKNLQSLVLLEK-GLTGK----LPIEPSKLVNLRRLALAGNQIN  153 (269)
Q Consensus       112 l~~l~~L~~L~L~~n-~l~~~----~p~~~~~l~~L~~L~L~~n~l~  153 (269)
                      +..-+.|++|+|++| .+...    +-..+..-+.|+.|+|++|.+.
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~ig   83 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS   83 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCC
Confidence            344466777777764 55421    1222334445555555555554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.29  E-value=0.00047  Score=54.20  Aligned_cols=112  Identities=13%  Similarity=0.139  Sum_probs=83.0

Q ss_pred             CCCCCCCEEEccCC-cCCCC----CccccCCCCCCCEEEccCCcCCchhh----hhhcCcccCCEEeCcCCcCCCc----
Q 036300          137 SKLVNLRRLALAGN-QINGQ----IPASIGGLTKLLIFDLSRNNLSGSML----LTLGKLARLLKLDLSYNNLQEK----  203 (269)
Q Consensus       137 ~~l~~L~~L~L~~n-~l~~~----~p~~l~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~ls~n~l~~~----  203 (269)
                      .+-+.|++|+|++| .+...    +-+.+..-+.|+.|+|++|.+.....    ..+..-+.|+.|+|+.|.+.+.    
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence            45678999999986 77632    34556667889999999999985443    3444557899999999999853    


Q ss_pred             CchhhcCCCCCCEEEccCC---ccCC----cchhhhhcCCCCCeEEccCCCC
Q 036300          204 IPKEIGNLHNVTFLDLRSN---NFLG----GLVGSIEEMVSLKEMVVSNNPI  248 (269)
Q Consensus       204 ~p~~~~~l~~L~~L~L~~N---~l~~----~~~~~~~~l~~L~~L~l~~N~l  248 (269)
                      +.+.+..-+.|++|+|++|   .+..    .+.+.+..-+.|+.|+++.|.+
T Consensus       118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            3345566678999999865   3332    2455677778999999998876

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.23  E-value=0.00066  Score=49.69  Aligned_cols=57  Identities=23%  Similarity=0.248  Sum_probs=40.0

Q ss_pred             CEEEccCCcCC-chhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccC
Q 036300          167 LIFDLSRNNLS-GSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFL  225 (269)
Q Consensus       167 ~~L~l~~n~l~-~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~  225 (269)
                      ..++.+++.++ ..+|..+  .++|+.|+|++|+++...+..|..+++|+.|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            36677777775 2455433  246888888888888655566777888888888888765

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.96  E-value=0.0016  Score=47.57  Aligned_cols=33  Identities=33%  Similarity=0.277  Sum_probs=12.8

Q ss_pred             CCEEEcccCCCCCCCCCCCCCCCCCCEEEccCC
Q 036300          118 LQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGN  150 (269)
Q Consensus       118 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n  150 (269)
                      |++|+|++|.|+...+..|..+++|++|+|.+|
T Consensus        33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   65 (130)
T 3rfe_A           33 TTELVLTGNNLTALPPGLLDALPALRTAHLGAN   65 (130)
T ss_dssp             CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred             CCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence            444444444444222223333334444444433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	269
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.001
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.003
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.004
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	9e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	0.003
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	0.004
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	9e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	2e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.001
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	7e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.004
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.001
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.001
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.004

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 58.1 bits (139), Expect = 2e-10
 Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 6/84 (7%)

Query: 139 LVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYN 198
           L NL  L L  N I+   P  +  LTKL     + N +S   + +L  L  +  L   +N
Sbjct: 306 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHN 361

Query: 199 NLQEKIPKEIGNLHNVTFLDLRSN 222
            + +  P  + NL  +T L L   
Sbjct: 362 QISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 55.4 bits (132), Expect = 1e-09
 Identities = 35/176 (19%), Positives = 63/176 (35%), Gaps = 31/176 (17%)

Query: 91  NSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGN 150
            +LD L    N         ++  L NL  L L    ++   P+  S L  L  L L  N
Sbjct: 219 TNLDELSLNGNQ---LKDIGTLASLTNLTDLDLANNQISNLAPL--SGLTKLTELKLGAN 273

Query: 151 QINGQIP--------------------ASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARL 190
           QI+   P                    + I  L  L    L  NN+S   +  +  L +L
Sbjct: 274 QISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKL 331

Query: 191 LKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNN 246
            +L  + N + +     + NL N+ +L    N      +  +  +  + ++ +++ 
Sbjct: 332 QRLFFANNKVSD--VSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 13/88 (14%), Positives = 39/88 (44%), Gaps = 6/88 (6%)

Query: 162 GLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRS 221
            L + +   L + N++    ++   L ++  L      ++      +  L+N+T ++  +
Sbjct: 20  ALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSN 75

Query: 222 NNFLGGLVGSIEEMVSLKEMVVSNNPIF 249
           N      +  ++ +  L +++++NN I 
Sbjct: 76  NQLTD--ITPLKNLTKLVDILMNNNQIA 101

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.5 bits (83), Expect = 0.003
 Identities = 12/81 (14%), Positives = 29/81 (35%), Gaps = 6/81 (7%)

Query: 137 SKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLS 196
           + L    +  L    +   +  +   L ++      R  +    +  +  L  L +++ S
Sbjct: 19  TALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFS 74

Query: 197 YNNLQEKIPKEIGNLHNVTFL 217
            N L +  P  + NL  +  +
Sbjct: 75  NNQLTDITP--LKNLTKLVDI 93

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 57.5 bits (137), Expect = 3e-10
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 169 FDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGG 227
            DL  N + G++   L +L  L  L++S+NNL  +IP + GNL         +N  L G
Sbjct: 249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCG 306

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 52.1 bits (123), Expect = 2e-08
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 147 LAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNL 200
           L  N+I G +P  +  L  L   ++S NNL G  +   G L R      + N  
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE-IPQGGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 47.4 bits (111), Expect = 6e-07
 Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 1/59 (1%)

Query: 194 DLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGG 252
           DL  N +   +P+ +  L  +  L++ S N L G +     +        +NN    G 
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNV-SFNNLCGEIPQGGNLQRFDVSAYANNKCLCGS 307

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 44.4 bits (103), Expect = 6e-06
 Identities = 29/149 (19%), Positives = 49/149 (32%), Gaps = 2/149 (1%)

Query: 34  TGLQGVSCDFFHGLWHVSAISIGPVYDNSLVCSQCKIFKPPLQSPIEIPSSNWQKLANSL 93
           +G    S   F  L+    IS   +                  S   +         +  
Sbjct: 162 SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDK 221

Query: 94  DSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQIN 153
           ++ +       +      +   KNL  L L    + G LP   ++L  L  L ++ N + 
Sbjct: 222 NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281

Query: 154 GQIPASIGGLTKLLIFDLSRNN-LSGSML 181
           G+IP   G L +  +   + N  L GS L
Sbjct: 282 GEIP-QGGNLQRFDVSAYANNKCLCGSPL 309

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 43.2 bits (100), Expect = 2e-05
 Identities = 25/143 (17%), Positives = 44/143 (30%), Gaps = 1/143 (0%)

Query: 9   LYSTIQGFVGKWWNGSDLYPDPFGRTGLQGVSCDFFHGLWHVSAISIGPVYDNSLVCSQC 68
           +   I    G +            R   +         L  V         D S++    
Sbjct: 161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSD 220

Query: 69  KIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGL 128
           K  +    +   +     +   +   +     N R+ GT+P  +  LK L SL +    L
Sbjct: 221 KNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280

Query: 129 TGKLPIEPSKLVNLRRLALAGNQ 151
            G++P +   L      A A N+
Sbjct: 281 CGEIP-QGGNLQRFDVSAYANNK 302

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.3 bits (129), Expect = 3e-09
 Identities = 40/223 (17%), Positives = 76/223 (34%), Gaps = 51/223 (22%)

Query: 89  LANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALA 148
           L      L+  +N ++          LKNL +L+L+   ++   P   + LV L RL L+
Sbjct: 29  LPPDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 87

Query: 149 GNQI-----------------------------------------------NGQIPASIG 161
            NQ+                                               +G    +  
Sbjct: 88  KNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 147

Query: 162 GLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRS 221
           G+ KL    ++  N++    +  G    L +L L  N + +     +  L+N+  L L  
Sbjct: 148 GMKKLSYIRIADTNITT---IPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 204

Query: 222 NNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNL 264
           N+      GS+     L+E+ ++NN +          + +Q +
Sbjct: 205 NSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVV 247

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.0 bits (123), Expect = 2e-08
 Identities = 37/175 (21%), Positives = 68/175 (38%), Gaps = 10/175 (5%)

Query: 80  EIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKL 139
           ++  S +  L   +      +  +  G    +   +K L  + + +  +T    I     
Sbjct: 114 KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT---TIPQGLP 170

Query: 140 VNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNN 199
            +L  L L GN+I     AS+ GL  L    LS N++S     +L     L +L L+ N 
Sbjct: 171 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 230

Query: 200 LQEKIPKEIGNLHNVTFLDLRSNNF------LGGLVGSIEEMVSLKEMVVSNNPI 248
           L  K+P  + +   +  + L +NN            G   +  S   + + +NP+
Sbjct: 231 LV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.7 bits (112), Expect = 5e-07
 Identities = 24/127 (18%), Positives = 46/127 (36%), Gaps = 3/127 (2%)

Query: 141 NLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNL 200
           +   L L  N+I          L  L    L  N +S         L +L +L LS N L
Sbjct: 32  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

Query: 201 QEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWEN 260
           +E +P+++     +  L +  N            +  +  + +  NP+   G+    ++ 
Sbjct: 92  KE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 148

Query: 261 LQNLEIW 267
           ++ L   
Sbjct: 149 MKKLSYI 155

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.3 bits (111), Expect = 6e-07
 Identities = 31/161 (19%), Positives = 57/161 (35%), Gaps = 12/161 (7%)

Query: 107 TIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKL 166
            +P  +    +   L L    +T     +   L NL  L L  N+I+   P +   L KL
Sbjct: 24  KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 167 LIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRS--NNF 224
               LS+N L     L       L +L +  N + +        L+ +  ++L +     
Sbjct: 82  ERLYLSKNQLKE---LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 138

Query: 225 LGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLE 265
            G   G+ + M  L  + +++       +  I      +L 
Sbjct: 139 SGIENGAFQGMKKLSYIRIADT-----NITTIPQGLPPSLT 174

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 2e-07
 Identities = 16/128 (12%), Positives = 43/128 (33%), Gaps = 3/128 (2%)

Query: 143 RRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQE 202
           + L L G  ++  +   +     ++ F   R+ +   +        R+  +DLS + ++ 
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHF-SPFRVQHMDLSNSVIEV 60

Query: 203 K-IPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENL 261
             +   +     +  L L        +V ++ +  +L  + +S    F          + 
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120

Query: 262 QNLEIWIF 269
             L+    
Sbjct: 121 SRLDELNL 128

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (108), Expect = 2e-06
 Identities = 11/95 (11%), Positives = 33/95 (34%), Gaps = 10/95 (10%)

Query: 140 VNLRRLALAGNQIN-GQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGK----LARLLKLD 194
           ++++ L +   +++  +    +  L +  +  L    L+ +    +         L +L+
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 195 LSYNNLQEKIPKEIG-----NLHNVTFLDLRSNNF 224
           L  N L +     +          +  L L++   
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 96

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (104), Expect = 5e-06
 Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 9/80 (11%)

Query: 141 NLRRLALAGNQINGQ----IPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLAR-----LL 191
            LR L LA   ++      + A++     L   DLS N L  + +L L +  R     L 
Sbjct: 370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE 429

Query: 192 KLDLSYNNLQEKIPKEIGNL 211
           +L L      E++   +  L
Sbjct: 430 QLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 1e-04
 Identities = 10/72 (13%), Positives = 26/72 (36%), Gaps = 5/72 (6%)

Query: 190 LLKLDLSYNNLQEKIPKEI-GNLHNVTFLDLRSNNF----LGGLVGSIEEMVSLKEMVVS 244
           +  LD+    L +    E+   L     + L            +  ++    +L E+ + 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 245 NNPIFGGGLNGI 256
           +N +   G++ +
Sbjct: 64  SNELGDVGVHCV 75

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 1e-04
 Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 9/85 (10%)

Query: 164 TKLLIFDLSRNNLSG----SMLLTLGKLARLLKLDLSYNNLQEKIPKEIG-----NLHNV 214
           + L +  L+  ++S     S+  TL     L +LDLS N L +    ++          +
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 215 TFLDLRSNNFLGGLVGSIEEMVSLK 239
             L L    +   +   ++ +   K
Sbjct: 429 EQLVLYDIYWSEEMEDRLQALEKDK 453

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (81), Expect = 0.004
 Identities = 13/93 (13%), Positives = 27/93 (29%), Gaps = 4/93 (4%)

Query: 92  SLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGK----LPIEPSKLVNLRRLAL 147
            + SL+              +  L+  Q + L + GLT      +         L  L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 148 AGNQINGQIPASIGGLTKLLIFDLSRNNLSGSM 180
             N++       +    +     + + +L    
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (104), Expect = 4e-06
 Identities = 34/148 (22%), Positives = 57/148 (38%), Gaps = 1/148 (0%)

Query: 117 NLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNL 176
            LQ L L +  L          L NL  L L GN+I+     +  GL  L    L +N +
Sbjct: 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189

Query: 177 SGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMV 236
           +         L RL+ L L  NNL     + +  L  + +L L  N ++     +     
Sbjct: 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC-RARPLWA 248

Query: 237 SLKEMVVSNNPIFGGGLNGIRWENLQNL 264
            L++   S++ +       +   +L+ L
Sbjct: 249 WLQKFRGSSSEVPCSLPQRLAGRDLKRL 276

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 9e-06
 Identities = 35/212 (16%), Positives = 63/212 (29%), Gaps = 10/212 (4%)

Query: 20  WWNGSDLYPDPFGRTGLQGVSCDFFHGLWHVSAISIGPVYDNSLVCSQCKIFK-----PP 74
                    D      L+ V    FHGL  +  + +       L     +          
Sbjct: 77  TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYL 136

Query: 75  LQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPI 134
             + ++    +  +   +L  L    N R+      +   L +L  L+L +  +    P 
Sbjct: 137 QDNALQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 195

Query: 135 EPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLD 194
               L  L  L L  N ++     ++  L  L    L+ N             A L K  
Sbjct: 196 AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFR 254

Query: 195 LSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLG 226
            S + +   +P+    L       L +N+  G
Sbjct: 255 GSSSEVPCSLPQ---RLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (82), Expect = 0.003
 Identities = 39/172 (22%), Positives = 59/172 (34%), Gaps = 6/172 (3%)

Query: 80  EIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKL 139
            +P      +  +   +    N R+      S    +NL  L L    L        + L
Sbjct: 25  AVPVG----IPAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGL 79

Query: 140 VNLRRLALAGNQINGQI-PASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYN 198
             L +L L+ N     + PA+  GL +L    L R  L          LA L  L L  N
Sbjct: 80  ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN 139

Query: 199 NLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFG 250
            LQ        +L N+T L L  N        +   + SL  +++  N +  
Sbjct: 140 ALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (80), Expect = 0.004
 Identities = 25/114 (21%), Positives = 35/114 (30%)

Query: 133 PIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLK 192
           P     L  L  L L    +    P    GL  L    L  N L      T   L  L  
Sbjct: 98  PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 157

Query: 193 LDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNN 246
           L L  N +     +    LH++  L L  N        +  ++  L  + +  N
Sbjct: 158 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.3 bits (95), Expect = 7e-05
 Identities = 21/90 (23%), Positives = 34/90 (37%), Gaps = 9/90 (10%)

Query: 150 NQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIG 209
           N  + +I +       L   ++S N L            RL +L  S+N+L E +P+   
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLIE----LPALPPRLERLIASFNHLAE-VPELPQ 324

Query: 210 NLHNVTFLDLRSNNFLGGLVGSIEEMVSLK 239
           NL     L +   N L       E +  L+
Sbjct: 325 NL---KQLHV-EYNPLREFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.2 bits (92), Expect = 1e-04
 Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 8/80 (10%)

Query: 169 FDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGL 228
                N  S  +         L +L++S N L E +P     L     L   S N L  +
Sbjct: 265 NLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRL---ERLIA-SFNHLAEV 319

Query: 229 VGSIEEMVSLKEMVVSNNPI 248
               E   +LK++ V  NP+
Sbjct: 320 ---PELPQNLKQLHVEYNPL 336

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.9 bits (90), Expect = 9e-05
 Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 4/89 (4%)

Query: 137 SKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLS 196
            +L+ +  L L+ N++    P ++  L  L +   S N      +  +  L RL +L L 
Sbjct: 17  EQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNA--LENVDGVANLPRLQELLLC 73

Query: 197 YNNLQE-KIPKEIGNLHNVTFLDLRSNNF 224
            N LQ+    + + +   +  L+L+ N+ 
Sbjct: 74  NNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (90), Expect = 2e-04
 Identities = 28/139 (20%), Positives = 50/139 (35%), Gaps = 4/139 (2%)

Query: 80  EIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKG--LTGKLPIEPS 137
           E+     ++L   +     GS   L      S   L      V+L +   +   L I   
Sbjct: 3   ELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEE 62

Query: 138 KLVNLRRLALAGNQINGQ--IPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDL 195
            +  L  L L+ N++     + + +     L I +LS N L     L   K  +L +L L
Sbjct: 63  NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWL 122

Query: 196 SYNNLQEKIPKEIGNLHNV 214
             N+L +    +   +  +
Sbjct: 123 DGNSLSDTFRDQSTYISAI 141

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 3e-04
 Identities = 13/87 (14%), Positives = 29/87 (33%), Gaps = 7/87 (8%)

Query: 183 TLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMV 242
            + K+A  L+++    NL   +P ++    + T L L  N      + ++     L ++ 
Sbjct: 5   EVSKVASHLEVNCDKRNLTA-LPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 243 VSNNPIFGGGLNGIRWENLQNLEIWIF 269
           +    +            L  L     
Sbjct: 62  LDRAELT----KLQVDGTLPVLGTLDL 84

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (85), Expect = 0.001
 Identities = 23/76 (30%), Positives = 31/76 (40%), Gaps = 1/76 (1%)

Query: 150 NQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIG 209
           N++    P  +    KL    L+ NNL+      L  L  L  L L  N+L   IPK   
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFF 192

Query: 210 NLHNVTFLDLRSNNFL 225
             H + F  L  N +L
Sbjct: 193 GSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (85), Expect = 0.001
 Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 3/66 (4%)

Query: 159 SIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLD 218
            +  +   L  +  + NL+ ++   L K      L LS N L       +     +T L+
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 219 LRSNNF 224
           L     
Sbjct: 62  LDRAEL 67

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 7e-04
 Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 4/61 (6%)

Query: 160 IGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDL 219
           +  L+KL       N +S   +  L  L  L+++ L  N + +  P  + N  N+  + L
Sbjct: 169 LANLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224

Query: 220 R 220
            
Sbjct: 225 T 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.4 bits (80), Expect = 0.004
 Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 4/56 (7%)

Query: 141 NLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLS 196
            L  L    N+I+   P  +  L  L+   L  N +S   +  L   + L  + L+
Sbjct: 174 KLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISD--VSPLANTSNLFIVTLT 225

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 0.001
 Identities = 25/100 (25%), Positives = 39/100 (39%), Gaps = 6/100 (6%)

Query: 128 LTGKLPIEPSKLVN---LRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTL 184
           LT +L  + ++  N    R L L G +I   I      L +    D S N +    L   
Sbjct: 3   LTAELIEQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI--RKLDGF 59

Query: 185 GKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNF 224
             L RL  L ++ N +          L ++T L L +N+ 
Sbjct: 60  PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL 99

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.2 bits (84), Expect = 0.001
 Identities = 13/83 (15%), Positives = 29/83 (34%), Gaps = 12/83 (14%)

Query: 169 FDLSRNNLSG------SMLLTLGKLARLLKLDLSYNNLQEKIPKEI-----GNLHNVTFL 217
             L+   LS           +  +   L  L L YN ++    + +       + ++ FL
Sbjct: 248 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFL 307

Query: 218 DLRSNNFLGGLVGSIEEMVSLKE 240
           +L + N        ++E+  +  
Sbjct: 308 EL-NGNRFSEEDDVVDEIREVFS 329

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.4 bits (80), Expect = 0.004
 Identities = 13/78 (16%), Positives = 31/78 (39%), Gaps = 10/78 (12%)

Query: 155 QIPASIG------GLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEI 208
            +P  I          + +  +L + +++    +T  +L  + ++  + ++++      I
Sbjct: 9   TVPTPIKQIFSDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIKSVQG--I 64

Query: 209 GNLHNVTFLDLRSNNFLG 226
             L NVT L L  N    
Sbjct: 65  QYLPNVTKLFLNGNKLTD 82

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	269
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.92
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.92
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.9
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.89
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.89
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.87
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.86
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.82
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.81
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.8
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.8
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.77
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.77
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.75
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.74
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.71
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.71
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.69
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.69
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.68
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.68
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.68
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.66
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.57
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.53
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.51
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.48
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.47
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.46
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.44
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.39
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.25
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.23
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.99
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.89
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.79
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.68
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.3
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.07
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.83
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.59

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=1e-36  Score=259.51  Aligned_cols=255  Identities=26%  Similarity=0.355  Sum_probs=178.1

Q ss_pred             CHHHHHHHHHHHhcccC----CCCCCCCCCCCCCC--CCCCCceEeecCCCceEEEEEEeCC--------CCCCCccccc
Q 036300            2 ERKEKEALYSTIQGFVG----KWWNGSDLYPDPFG--RTGLQGVSCDFFHGLWHVSAISIGP--------VYDNSLVCSQ   67 (269)
Q Consensus         2 ~~~~~~~l~~~~~~~~~----~~W~~~~~~~~~C~--~~~~~gv~C~~~~~~~~v~~l~l~~--------~~~~~~~~~~   67 (269)
                      .++|++||++||+++.+    ++|..++   |||.  |.   ||+|+..++..||++|++..        +|+....+..
T Consensus         4 ~~~e~~aLl~~k~~~~~~~~l~sW~~~~---d~C~~~w~---gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~   77 (313)
T d1ogqa_           4 NPQDKQALLQIKKDLGNPTTLSSWLPTT---DCCNRTWL---GVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPY   77 (313)
T ss_dssp             CHHHHHHHHHHHHHTTCCGGGTTCCTTS---CTTTTCST---TEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTT
T ss_pred             CHHHHHHHHHHHHHCCCCCcCCCCCCCC---CCCCCcCC---CeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCcc
Confidence            47899999999999976    6797653   9994  87   99999877777999999942        2233333444


Q ss_pred             ccccCCC--CCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEE
Q 036300           68 CKIFKPP--LQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRL  145 (269)
Q Consensus        68 l~~~~~~--~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  145 (269)
                      +..+...  .++.|+||+.+. + +++|++|++++| .+.+..+..+..+++|+++++++|.+.+.+|..+.++++++++
T Consensus        78 L~~L~Ls~~N~l~g~iP~~i~-~-L~~L~~L~Ls~N-~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l  154 (313)
T d1ogqa_          78 LNFLYIGGINNLVGPIPPAIA-K-LTQLHYLYITHT-NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI  154 (313)
T ss_dssp             CSEEEEEEETTEESCCCGGGG-G-CTTCSEEEEEEE-CCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred             ccccccccccccccccccccc-c-ccccchhhhccc-cccccccccccchhhhcccccccccccccCchhhccCccccee
Confidence            4444332  234556666542 2 366666666666 5666666666666666666666666666666667777777777


Q ss_pred             EccCCcCCCCCccccCCCCCC-CEEEccCCcCCchh-----------------------hhhhcCcccCCEEeCcCCcCC
Q 036300          146 ALAGNQINGQIPASIGGLTKL-LIFDLSRNNLSGSM-----------------------LLTLGKLARLLKLDLSYNNLQ  201 (269)
Q Consensus       146 ~L~~n~l~~~~p~~l~~l~~L-~~L~l~~n~l~~~~-----------------------~~~~~~l~~L~~L~ls~n~l~  201 (269)
                      ++++|.+++.+|..+..+..+ +.+++++|++++..                       |..+..+++++.+++++|.+.
T Consensus       155 ~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~  234 (313)
T d1ogqa_         155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA  234 (313)
T ss_dssp             ECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC
T ss_pred             eccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            777777766667666665554 55666666554332                       333345566777777777777


Q ss_pred             CcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300          202 EKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       202 ~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l  269 (269)
                      +.+| .+..+++|+.|++++|++++.+|..++++++|++|+|++|++ ++.+|.  +.++++|+.+++
T Consensus       235 ~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l-~g~iP~--~~~L~~L~~l~l  298 (313)
T d1ogqa_         235 FDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL-CGEIPQ--GGNLQRFDVSAY  298 (313)
T ss_dssp             CBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEE-EEECCC--STTGGGSCGGGT
T ss_pred             cccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcc-cccCCC--cccCCCCCHHHh
Confidence            6544 577888999999999999988999999999999999999999 778884  567788877654

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.6e-24  Score=178.98  Aligned_cols=199  Identities=20%  Similarity=0.141  Sum_probs=150.2

Q ss_pred             cccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcc-cCCCCCCCCCCCCCCCCCCEE
Q 036300           67 QCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLL-EKGLTGKLPIEPSKLVNLRRL  145 (269)
Q Consensus        67 ~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~-~n~l~~~~p~~~~~l~~L~~L  145 (269)
                      .++.+..+.+.+.++|...|.++ ++|++|++++| .+....+..+..++.++.+.+. .+.++...+..+.++++|++|
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l-~~L~~L~ls~n-~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L  110 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRAC-RNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTC-TTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             CCCEEECcCCcCCCCCHHHhhcc-ccccccccccc-cccccccccccccccccccccccccccccccchhhcccccCCEE
Confidence            34556666677888888777776 88888998888 6777666666777777777654 445554556677888888888


Q ss_pred             EccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccC
Q 036300          146 ALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFL  225 (269)
Q Consensus       146 ~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~  225 (269)
                      ++++|.+....+..+..+++|+.+++++|.+++..+..|..+++|+.|++++|++++..+..+.++++|+++++++|+++
T Consensus       111 ~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~  190 (284)
T d1ozna_         111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA  190 (284)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             ecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhcccc
Confidence            88888877555566777788888888888887666667777788888888888887766777778888888888888888


Q ss_pred             CcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300          226 GGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       226 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l  269 (269)
                      +..|..|..+++|++|++++|.+  ..++...+..+++|++|++
T Consensus       191 ~i~~~~f~~l~~L~~L~l~~N~i--~~~~~~~~~~~~~L~~L~l  232 (284)
T d1ozna_         191 HVHPHAFRDLGRLMTLYLFANNL--SALPTEALAPLRALQYLRL  232 (284)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCC--SCCCHHHHTTCTTCCEEEC
T ss_pred             ccChhHhhhhhhccccccccccc--ccccccccccccccCEEEe
Confidence            77788888888888888888888  4455557778888887764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=4.6e-24  Score=176.85  Aligned_cols=176  Identities=22%  Similarity=0.184  Sum_probs=110.1

Q ss_pred             cccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEE
Q 036300           67 QCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLA  146 (269)
Q Consensus        67 ~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  146 (269)
                      .++.+..+.+.+..+|...|.++ ++|++|+|++| .++. ++ .++.+++|++|++++|+++ ..+..+..+++|++|+
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l-~~L~~L~L~~N-~l~~-l~-~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~  106 (266)
T d1p9ag_          32 DTTILHLSENLLYTFSLATLMPY-TRLTQLNLDRA-ELTK-LQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLD  106 (266)
T ss_dssp             TCCEEECTTSCCSEEEGGGGTTC-TTCCEEECTTS-CCCE-EE-CCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEE
T ss_pred             CCCEEECcCCcCCCcCHHHhhcc-ccccccccccc-cccc-cc-ccccccccccccccccccc-cccccccccccccccc
Confidence            34455555566666666655554 66666666666 4543 33 3456666666666666666 3455566666666666


Q ss_pred             ccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCC
Q 036300          147 LAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLG  226 (269)
Q Consensus       147 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~  226 (269)
                      +++|.+....+..+..+.++++|++++|.++...+..+..++.++.+++++|++++..+..+..+++|++|+|++|+|+ 
T Consensus       107 l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-  185 (266)
T d1p9ag_         107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-  185 (266)
T ss_dssp             CCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-
T ss_pred             ccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-
Confidence            6666666444555566666666666666666555555566666666666666666555555666666666666666666 


Q ss_pred             cchhhhhcCCCCCeEEccCCCC
Q 036300          227 GLVGSIEEMVSLKEMVVSNNPI  248 (269)
Q Consensus       227 ~~~~~~~~l~~L~~L~l~~N~l  248 (269)
                      .+|+.+..+++|+.|+|++|++
T Consensus       186 ~lp~~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         186 TIPKGFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             CCCTTTTTTCCCSEEECCSCCB
T ss_pred             ccChhHCCCCCCCEEEecCCCC
Confidence            5555566666666666666666

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.2e-22  Score=168.22  Aligned_cols=181  Identities=23%  Similarity=0.221  Sum_probs=158.8

Q ss_pred             CcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCc
Q 036300           78 PIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIP  157 (269)
Q Consensus        78 ~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p  157 (269)
                      +.+||+++    .+++++|+|++| .+.+..+..|..+++|++|+|++|.++ .+| .++.+++|++|++++|+++ ..+
T Consensus        22 L~~iP~~l----p~~l~~L~Ls~N-~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~Ls~N~l~-~~~   93 (266)
T d1p9ag_          22 LTALPPDL----PKDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDLSHNQLQ-SLP   93 (266)
T ss_dssp             CSSCCSCC----CTTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSCCC-EEE-CCSCCTTCCEEECCSSCCS-SCC
T ss_pred             CCeeCcCc----CcCCCEEECcCC-cCCCcCHHHhhcccccccccccccccc-ccc-ccccccccccccccccccc-ccc
Confidence            34566554    468999999999 788766678999999999999999998 454 4678999999999999998 567


Q ss_pred             cccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCC
Q 036300          158 ASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVS  237 (269)
Q Consensus       158 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  237 (269)
                      ..+..+++|++|++++|.+....+..+..+.+++.|++++|.+....+..+..+++++.+++++|++++..+..|..+++
T Consensus        94 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~  173 (266)
T d1p9ag_          94 LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLEN  173 (266)
T ss_dssp             CCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTT
T ss_pred             cccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccc
Confidence            78899999999999999998777788889999999999999999777777888999999999999999888889999999


Q ss_pred             CCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300          238 LKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       238 L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l  269 (269)
                      |++|+|++|+|  ..+|. .+..+++|+.|+|
T Consensus       174 L~~L~Ls~N~L--~~lp~-~~~~~~~L~~L~L  202 (266)
T d1p9ag_         174 LDTLLLQENSL--YTIPK-GFFGSHLLPFAFL  202 (266)
T ss_dssp             CCEEECCSSCC--CCCCT-TTTTTCCCSEEEC
T ss_pred             cceeecccCCC--cccCh-hHCCCCCCCEEEe
Confidence            99999999999  58887 5667899998875

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.89  E-value=3.1e-22  Score=168.64  Aligned_cols=217  Identities=19%  Similarity=0.247  Sum_probs=151.3

Q ss_pred             CCCCCCCCceEeecCCCceEEEEEEeCCCCCCCcccccccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccC
Q 036300           30 PFGRTGLQGVSCDFFHGLWHVSAISIGPVYDNSLVCSQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIP  109 (269)
Q Consensus        30 ~C~~~~~~gv~C~~~~~~~~v~~l~l~~~~~~~~~~~~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p  109 (269)
                      -|.|.   +|.|...+         +.++|++..  .+++.+....+.+.++|+..|.++ ++|++|++++| .+....|
T Consensus         9 ~c~~~---~~~C~~~~---------L~~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l-~~L~~L~l~~n-~~~~i~~   72 (305)
T d1xkua_           9 QCHLR---VVQCSDLG---------LEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNL-KNLHTLILINN-KISKISP   72 (305)
T ss_dssp             EEETT---EEECTTSC---------CCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTC-TTCCEEECCSS-CCCCBCT
T ss_pred             EecCC---EEEecCCC---------CCccCCCCC--CCCCEEECcCCcCCCcChhHhhcc-ccccccccccc-cccccch
Confidence            34555   77776532         445555322  356667777788889998777776 89999999999 6777667


Q ss_pred             ccccCCCCCCEEEcccCCCCCCCCC------------------------------------------------CCCCCCC
Q 036300          110 TSIDYLKNLQSLVLLEKGLTGKLPI------------------------------------------------EPSKLVN  141 (269)
Q Consensus       110 ~~l~~l~~L~~L~L~~n~l~~~~p~------------------------------------------------~~~~l~~  141 (269)
                      ..|..+++|++|++++|+++. +|.                                                .+..+++
T Consensus        73 ~~f~~l~~L~~L~l~~n~l~~-l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~  151 (305)
T d1xkua_          73 GAFAPLVKLERLYLSKNQLKE-LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK  151 (305)
T ss_dssp             TTTTTCTTCCEEECCSSCCSB-CCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTT
T ss_pred             hhhhCCCccCEecccCCccCc-CccchhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccc
Confidence            789999999999999887762 221                                                1224455


Q ss_pred             CCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccC
Q 036300          142 LRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRS  221 (269)
Q Consensus       142 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~  221 (269)
                      |+++++++|.++ .+|..  .+++|++|++++|..+...+..+..++.++.|++++|++.+..+..+.++++|++|+|++
T Consensus       152 L~~l~l~~n~l~-~l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~  228 (305)
T d1xkua_         152 LSYIRIADTNIT-TIPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN  228 (305)
T ss_dssp             CCEEECCSSCCC-SCCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCS
T ss_pred             cCccccccCCcc-ccCcc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccc
Confidence            666777777666 44443  246777777777777766677777778888888888888776677777788888888888


Q ss_pred             CccCCcchhhhhcCCCCCeEEccCCCCCCCCCCcccc------ccCcCCceecC
Q 036300          222 NNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRW------ENLQNLEIWIF  269 (269)
Q Consensus       222 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~------~~l~~L~~L~l  269 (269)
                      |+++ .+|..+..+++|++|++++|+|  ..++...|      ..+++|+.|++
T Consensus       229 N~L~-~lp~~l~~l~~L~~L~Ls~N~i--~~i~~~~f~~~~~~~~~~~L~~L~L  279 (305)
T d1xkua_         229 NKLV-KVPGGLADHKYIQVVYLHNNNI--SAIGSNDFCPPGYNTKKASYSGVSL  279 (305)
T ss_dssp             SCCS-SCCTTTTTCSSCCEEECCSSCC--CCCCTTSSSCSSCCTTSCCCSEEEC
T ss_pred             cccc-ccccccccccCCCEEECCCCcc--CccChhhccCcchhcccCCCCEEEC
Confidence            8877 4566777888888888888887  44543222      34555665543

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.89  E-value=1.8e-23  Score=176.93  Aligned_cols=185  Identities=28%  Similarity=0.363  Sum_probs=163.7

Q ss_pred             cccCchhHHhhcCCccEEEccC-CCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCc
Q 036300           79 IEIPSSNWQKLANSLDSLEFGS-NPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIP  157 (269)
Q Consensus        79 ~~lp~~~~~~l~~~L~~L~l~~-n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p  157 (269)
                      ++||+.+. + +++|++|+|++ | .+.|.+|+.|+++++|++|+|++|++.+..+..+..+.+|+++++++|.+.+.+|
T Consensus        66 ~~lp~~l~-~-L~~L~~L~Ls~~N-~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p  142 (313)
T d1ogqa_          66 YPIPSSLA-N-LPYLNFLYIGGIN-NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP  142 (313)
T ss_dssp             EECCGGGG-G-CTTCSEEEEEEET-TEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCC
T ss_pred             CCCChHHh-c-Ccccccccccccc-ccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCc
Confidence            36888874 4 49999999987 6 7999999999999999999999999998888889999999999999999998999


Q ss_pred             cccCCCCCCCEEEccCCcCCchhhhhhcCcccC-CEEeCcCCcCCCcC-----------------------chhhcCCCC
Q 036300          158 ASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARL-LKLDLSYNNLQEKI-----------------------PKEIGNLHN  213 (269)
Q Consensus       158 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~ls~n~l~~~~-----------------------p~~~~~l~~  213 (269)
                      ..+..++.++++++++|.+++.+|..+..+..+ +.+++++|++++..                       |..+..+++
T Consensus       143 ~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~  222 (313)
T d1ogqa_         143 PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN  222 (313)
T ss_dssp             GGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSC
T ss_pred             hhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999999999999999998888776 88999998877543                       444556678


Q ss_pred             CCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300          214 VTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       214 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l  269 (269)
                      ++.+++++|.+++.++ .+..+++|++|++++|++ .+.+|. .+.++++|++|+|
T Consensus       223 l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l-~g~iP~-~l~~L~~L~~L~L  275 (313)
T d1ogqa_         223 TQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRI-YGTLPQ-GLTQLKFLHSLNV  275 (313)
T ss_dssp             CSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCC-EECCCG-GGGGCTTCCEEEC
T ss_pred             cccccccccccccccc-ccccccccccccCccCee-cccCCh-HHhCCCCCCEEEC
Confidence            9999999999987655 688889999999999999 778996 7899999999986

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.8e-21  Score=162.34  Aligned_cols=185  Identities=22%  Similarity=0.202  Sum_probs=160.1

Q ss_pred             CcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEcc-CCcCCCCC
Q 036300           78 PIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALA-GNQINGQI  156 (269)
Q Consensus        78 ~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~-~n~l~~~~  156 (269)
                      +.++|..+    ++.+++|+|++| .+....+..|..+++|++|++++|.+....+..+..+..++.+... .+.++...
T Consensus        23 L~~iP~~i----p~~~~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~   97 (284)
T d1ozna_          23 LQAVPVGI----PAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD   97 (284)
T ss_dssp             CSSCCTTC----CTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCC
T ss_pred             CCccCCCC----CCCCCEEECcCC-cCCCCCHHHhhcccccccccccccccccccccccccccccccccccccccccccc
Confidence            34566544    467899999999 7877666689999999999999999998888888899999998875 55666555


Q ss_pred             ccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCC
Q 036300          157 PASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMV  236 (269)
Q Consensus       157 p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  236 (269)
                      +..|.++++|++|++++|.+....+..+....+|+.+++++|++++..+..|..+++|+.|++++|++++..+..|.+++
T Consensus        98 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~  177 (284)
T d1ozna_          98 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH  177 (284)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             chhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhcccc
Confidence            77899999999999999999877777888899999999999999976677888999999999999999988888999999


Q ss_pred             CCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300          237 SLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       237 ~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l  269 (269)
                      +|+++++++|.+ . .++...|..+++|++|++
T Consensus       178 ~L~~l~l~~N~l-~-~i~~~~f~~l~~L~~L~l  208 (284)
T d1ozna_         178 SLDRLLLHQNRV-A-HVHPHAFRDLGRLMTLYL  208 (284)
T ss_dssp             TCCEEECCSSCC-C-EECTTTTTTCTTCCEEEC
T ss_pred             ccchhhhhhccc-c-ccChhHhhhhhhcccccc
Confidence            999999999999 4 454458999999999975

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.86  E-value=2e-20  Score=157.42  Aligned_cols=180  Identities=22%  Similarity=0.325  Sum_probs=140.3

Q ss_pred             CcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCc
Q 036300           78 PIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIP  157 (269)
Q Consensus        78 ~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p  157 (269)
                      +.++|..+    .+++++|+|++| .+....+..|..+++|++|++++|.+....|..|.++++|++|++++|+++ .+|
T Consensus        22 L~~lP~~l----~~~l~~L~Ls~N-~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~-~l~   95 (305)
T d1xkua_          22 LEKVPKDL----PPDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELP   95 (305)
T ss_dssp             CCSCCCSC----CTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCC
T ss_pred             CCccCCCC----CCCCCEEECcCC-cCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccC-cCc
Confidence            45666654    478999999999 676655557999999999999999999777888999999999999999876 333


Q ss_pred             cc------------------------------------------------cCCCCCCCEEEccCCcCCchhhhhhcCccc
Q 036300          158 AS------------------------------------------------IGGLTKLLIFDLSRNNLSGSMLLTLGKLAR  189 (269)
Q Consensus       158 ~~------------------------------------------------l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  189 (269)
                      ..                                                +..+++|+++++++|.++ .+|..  .+++
T Consensus        96 ~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~--~~~~  172 (305)
T d1xkua_          96 EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQG--LPPS  172 (305)
T ss_dssp             SSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSS--CCTT
T ss_pred             cchhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-ccCcc--cCCc
Confidence            22                                                222334445555555444 22222  2456


Q ss_pred             CCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceecC
Q 036300          190 LLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       190 L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~l  269 (269)
                      |+.|++++|...+..+..+..++.++.|++++|.+++..+..+.++++|++|++++|.+  ..+|. .+.++++|++|+|
T Consensus       173 L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L--~~lp~-~l~~l~~L~~L~L  249 (305)
T d1xkua_         173 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL--VKVPG-GLADHKYIQVVYL  249 (305)
T ss_dssp             CSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCC--SSCCT-TTTTCSSCCEEEC
T ss_pred             cCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccccc--ccccc-ccccccCCCEEEC
Confidence            77777777777777777888899999999999999988888999999999999999999  67876 7889999999875

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.82  E-value=3.2e-19  Score=141.06  Aligned_cols=161  Identities=24%  Similarity=0.379  Sum_probs=136.6

Q ss_pred             cCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEE
Q 036300           90 ANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIF  169 (269)
Q Consensus        90 ~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  169 (269)
                      ++++++|++++| .+.. + +.+..+++|++|++++|++++..|  ++++++|++|++++|.+. .++ .+..++.|++|
T Consensus        39 l~~l~~L~l~~~-~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L  111 (199)
T d2omxa2          39 LDQVTTLQADRL-GIKS-I-DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGL  111 (199)
T ss_dssp             HTTCCEEECTTS-CCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEE
T ss_pred             hcCCCEEECCCC-CCCC-c-cccccCCCcCcCccccccccCccc--ccCCcccccccccccccc-ccc-ccccccccccc
Confidence            389999999999 6664 3 358899999999999999985433  899999999999999988 555 48899999999


Q ss_pred             EccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCC
Q 036300          170 DLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIF  249 (269)
Q Consensus       170 ~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  249 (269)
                      ++++|.....  ..+..+++|+.|++++|++.. ++ .+..+++|++|++.+|++++..  .++++++|++|++++|++ 
T Consensus       112 ~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~~-~l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N~i-  184 (199)
T d2omxa2         112 TLFNNQITDI--DPLKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKV-  184 (199)
T ss_dssp             ECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCC-
T ss_pred             cccccccccc--cccchhhhhHHhhhhhhhhcc-cc-cccccccccccccccccccCCc--cccCCCCCCEEECCCCCC-
Confidence            9999988743  347789999999999999974 44 5889999999999999998643  488999999999999999 


Q ss_pred             CCCCCccccccCcCCcee
Q 036300          250 GGGLNGIRWENLQNLEIW  267 (269)
Q Consensus       250 ~~~~p~~~~~~l~~L~~L  267 (269)
                       ..++  .+.++++|+.|
T Consensus       185 -~~i~--~l~~L~~L~~L  199 (199)
T d2omxa2         185 -SDIS--VLAKLTNLESL  199 (199)
T ss_dssp             -CCCG--GGGGCTTCSEE
T ss_pred             -CCCc--cccCCCCCCcC
Confidence             4565  47889999876

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.81  E-value=3e-19  Score=142.41  Aligned_cols=162  Identities=27%  Similarity=0.381  Sum_probs=138.2

Q ss_pred             CCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEE
Q 036300           91 NSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFD  170 (269)
Q Consensus        91 ~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  170 (269)
                      ..|+.|++++| .+.+. + .+..+++|++|++++|++++ ++ .++.+++|++|++++|+++ .+| .+..+++|+.|+
T Consensus        46 ~~L~~L~l~~~-~i~~l-~-~l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~  118 (210)
T d1h6ta2          46 NSIDQIIANNS-DIKSV-Q-GIQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLS  118 (210)
T ss_dssp             HTCCEEECTTS-CCCCC-T-TGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEE
T ss_pred             cCccEEECcCC-CCCCc-h-hHhhCCCCCEEeCCCccccC-cc-ccccCcccccccccccccc-ccc-cccccccccccc
Confidence            78999999999 66653 3 47889999999999999995 44 4688999999999999998 566 588999999999


Q ss_pred             ccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCC
Q 036300          171 LSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFG  250 (269)
Q Consensus       171 l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  250 (269)
                      +++|.+.. + ..+..++.++.+++++|.+++  +..+..+++|+++++++|.+++. + .+.++++|++|++++|++  
T Consensus       119 l~~~~~~~-~-~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i--  190 (210)
T d1h6ta2         119 LEHNGISD-I-NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNHI--  190 (210)
T ss_dssp             CTTSCCCC-C-GGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCC--
T ss_pred             cccccccc-c-ccccccccccccccccccccc--ccccccccccccccccccccccc-c-cccCCCCCCEEECCCCCC--
Confidence            99999873 3 357788999999999999985  34577899999999999999854 3 488999999999999999  


Q ss_pred             CCCCccccccCcCCceecC
Q 036300          251 GGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       251 ~~~p~~~~~~l~~L~~L~l  269 (269)
                      ..++  .+.++++|++|+|
T Consensus       191 ~~l~--~l~~l~~L~~L~L  207 (210)
T d1h6ta2         191 SDLR--ALAGLKNLDVLEL  207 (210)
T ss_dssp             CBCG--GGTTCTTCSEEEE
T ss_pred             CCCh--hhcCCCCCCEEEc
Confidence            5676  4889999999975

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.80  E-value=2.9e-20  Score=146.31  Aligned_cols=161  Identities=20%  Similarity=0.145  Sum_probs=128.5

Q ss_pred             cccCchhHHhhcCCccEEEccCCCCceecc-CccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCc
Q 036300           79 IEIPSSNWQKLANSLDSLEFGSNPRLIGTI-PTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIP  157 (269)
Q Consensus        79 ~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p  157 (269)
                      .+||.++    .+++++|+|++| .++..+ +..|..+++|++|++++|.+....+..+..+++|++|++++|+++...|
T Consensus        21 ~~iP~~l----p~~l~~L~Ls~N-~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~   95 (192)
T d1w8aa_          21 KEIPRDI----PLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISN   95 (192)
T ss_dssp             SSCCSCC----CTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECS
T ss_pred             CccCCCC----CCCCCEEEeCCC-CCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCH
Confidence            4566554    478999999999 787654 4578899999999999999998888899999999999999999996667


Q ss_pred             cccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCC
Q 036300          158 ASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVS  237 (269)
Q Consensus       158 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  237 (269)
                      ..|.++++|++|+|++|++++..+..|..+++|++|++++|.+.......+ -...++.+.+..+.++...|..   +..
T Consensus        96 ~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~-~~~~l~~~~l~~~~~~c~~p~~---l~~  171 (192)
T d1w8aa_          96 KMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW-FAEWLRKKSLNGGAARCGAPSK---VRD  171 (192)
T ss_dssp             SSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH-HHHHHHHHCCSGGGCBBCSSTT---TTT
T ss_pred             HHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHH-HhhhhhhhcccCCCeEeCCChh---hcC
Confidence            789999999999999999998778889999999999999999875432211 1123455566777776656644   445


Q ss_pred             CCeEEccCCCC
Q 036300          238 LKEMVVSNNPI  248 (269)
Q Consensus       238 L~~L~l~~N~l  248 (269)
                      ++.++++.|.+
T Consensus       172 ~~l~~L~~n~l  182 (192)
T d1w8aa_         172 VQIKDLPHSEF  182 (192)
T ss_dssp             SBGGGSCTTTC
T ss_pred             CEeeecCHhhC
Confidence            66778888888

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=2.3e-19  Score=145.79  Aligned_cols=197  Identities=19%  Similarity=0.117  Sum_probs=143.4

Q ss_pred             cccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccC-ccccCCCCCCEEEccc-CCCCCCCCCCCCCCCCCCE
Q 036300           67 QCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIP-TSIDYLKNLQSLVLLE-KGLTGKLPIEPSKLVNLRR  144 (269)
Q Consensus        67 ~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p-~~l~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~  144 (269)
                      ++..+....+.+.++|...|.++ ++|++|++++| .+...++ ..|..++.++++.+.. |.+....+..|.++++|++
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l-~~L~~L~ls~n-~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~  107 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGF-GDLEKIEISQN-DVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY  107 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTC-TTCCEEEEESC-TTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCE
T ss_pred             CCCEEECcCCcCCccChhHhhcc-chhhhhhhccc-cccceeeccccccccccccccccccccccccccccccccccccc
Confidence            34555555577788888777775 88999999888 5665444 4677888888888764 5676666777888889999


Q ss_pred             EEccCCcCCCCCcc-ccCCCCCCCEEEccCCcCCchhhhhhcCcc-cCCEEeCcCCcCCCcCchhhcCCCCCCEE-EccC
Q 036300          145 LALAGNQINGQIPA-SIGGLTKLLIFDLSRNNLSGSMLLTLGKLA-RLLKLDLSYNNLQEKIPKEIGNLHNVTFL-DLRS  221 (269)
Q Consensus       145 L~L~~n~l~~~~p~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~ls~n~l~~~~p~~~~~l~~L~~L-~L~~  221 (269)
                      +++++|.++...+. .+..+..+..+...++.+....+..+..++ .++.+++++|+++.. +.......+++.+ ++++
T Consensus       108 l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i-~~~~~~~~~l~~~~~l~~  186 (242)
T d1xwdc1         108 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI-HNCAFNGTQLDELNLSDN  186 (242)
T ss_dssp             EEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE-CTTTTTTCCEEEEECTTC
T ss_pred             cccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccccc-ccccccchhhhccccccc
Confidence            99999888733221 233455565666667777655555666554 788999999999854 4444455666555 5677


Q ss_pred             CccCCcchhhhhcCCCCCeEEccCCCCCCCCCCccccccCcCCceec
Q 036300          222 NNFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNGIRWENLQNLEIWI  268 (269)
Q Consensus       222 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~~~~~~l~~L~~L~  268 (269)
                      |+++...+..|.++++|++|++++|++  ..+|...+.++++|++++
T Consensus       187 n~l~~l~~~~f~~l~~L~~L~Ls~N~l--~~l~~~~~~~l~~L~~l~  231 (242)
T d1xwdc1         187 NNLEELPNDVFHGASGPVILDISRTRI--HSLPSYGLENLKKLRARS  231 (242)
T ss_dssp             TTCCCCCTTTTTTSCCCSEEECTTSCC--CCCCSSSCTTCCEEESSS
T ss_pred             cccccccHHHhcCCCCCCEEECCCCcC--CccCHHHHcCCcccccCc
Confidence            888866566789999999999999999  578877888888888765

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.77  E-value=4e-19  Score=139.66  Aligned_cols=156  Identities=21%  Similarity=0.218  Sum_probs=126.7

Q ss_pred             ccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCC-CCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEc
Q 036300           93 LDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKL-PIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDL  171 (269)
Q Consensus        93 L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l  171 (269)
                      .++++.+++ +++ .+|+.+.  +++++|+|++|.+++.+ +..|.++++|++|++++|.++...+..+..+++|++|++
T Consensus        10 ~~~v~Cs~~-~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~L   85 (192)
T d1w8aa_          10 GTTVDCTGR-GLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             TTEEECTTS-CCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCEEEEeCC-CcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeee
Confidence            357888888 565 5787664  68999999999998644 556789999999999999999788889999999999999


Q ss_pred             cCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchh-hhhcCCCCCeEEccCCCCCC
Q 036300          172 SRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVG-SIEEMVSLKEMVVSNNPIFG  250 (269)
Q Consensus       172 ~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~l~~N~l~~  250 (269)
                      ++|+++...+..|.++++|++|+|++|++++..+..|..+++|++|+|++|.+...... .+.  ..++.+.+..+.+ .
T Consensus        86 s~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~--~~l~~~~l~~~~~-~  162 (192)
T d1w8aa_          86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSLNGGAA-R  162 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCCSGGGC-B
T ss_pred             ccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHh--hhhhhhcccCCCe-E
Confidence            99999977788899999999999999999987788899999999999999998864322 222  2345556666766 4


Q ss_pred             CCCCc
Q 036300          251 GGLNG  255 (269)
Q Consensus       251 ~~~p~  255 (269)
                      ...|.
T Consensus       163 c~~p~  167 (192)
T d1w8aa_         163 CGAPS  167 (192)
T ss_dssp             BCSST
T ss_pred             eCCCh
Confidence            44443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=1.2e-17  Score=134.34  Aligned_cols=163  Identities=23%  Similarity=0.338  Sum_probs=126.3

Q ss_pred             cCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEE
Q 036300           90 ANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIF  169 (269)
Q Consensus        90 ~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  169 (269)
                      +++|++|++++| .+.+..  .+..+++|+++++++|.++ .++ .+.++++|++++++++...+.  ..+...+.++.+
T Consensus        62 l~~L~~L~ls~n-~i~~~~--~l~~l~~l~~l~~~~n~~~-~i~-~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l  134 (227)
T d1h6ua2          62 LNNLIGLELKDN-QITDLA--PLKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVL  134 (227)
T ss_dssp             CTTCCEEECCSS-CCCCCG--GGTTCCSCCEEECCSCCCS-CCG-GGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEE
T ss_pred             CCCCcEeecCCc-eeeccc--ccccccccccccccccccc-ccc-ccccccccccccccccccccc--chhccccchhhh
Confidence            478888888888 565533  3777888888888888776 333 467788888888888877633  235667778888


Q ss_pred             EccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCC
Q 036300          170 DLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIF  249 (269)
Q Consensus       170 ~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  249 (269)
                      .++.+.+....  .+..+++|+.|++++|.+.+.  ..++++++|++|++++|++++ ++ .+.++++|++|++++|++ 
T Consensus       135 ~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~l-  207 (227)
T d1h6ua2         135 YLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQI-  207 (227)
T ss_dssp             ECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCC-
T ss_pred             hchhhhhchhh--hhccccccccccccccccccc--hhhcccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcC-
Confidence            88888776432  356788999999999998753  348899999999999999985 33 488999999999999999 


Q ss_pred             CCCCCccccccCcCCceecC
Q 036300          250 GGGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       250 ~~~~p~~~~~~l~~L~~L~l  269 (269)
                       ..++  .++++++|++|++
T Consensus       208 -t~i~--~l~~l~~L~~L~l  224 (227)
T d1h6ua2         208 -SDVS--PLANTSNLFIVTL  224 (227)
T ss_dssp             -CBCG--GGTTCTTCCEEEE
T ss_pred             -CCCc--ccccCCCCCEEEe
Confidence             5566  3789999999875

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=4.1e-17  Score=140.38  Aligned_cols=163  Identities=26%  Similarity=0.374  Sum_probs=128.5

Q ss_pred             cCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEE
Q 036300           90 ANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIF  169 (269)
Q Consensus        90 ~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  169 (269)
                      .++|++|++++| .+.. + +.+..+++|+.|++++|.+++..  .+..+++|++|+++++.+++ ++ .+..++.++.+
T Consensus       218 ~~~L~~L~l~~n-~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~-~~-~~~~~~~l~~l  290 (384)
T d2omza2         218 LTNLDELSLNGN-QLKD-I-GTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISN-IS-PLAGLTALTNL  290 (384)
T ss_dssp             CTTCCEEECCSS-CCCC-C-GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCSEE
T ss_pred             cCCCCEEECCCC-CCCC-c-chhhcccccchhccccCccCCCC--cccccccCCEeeccCcccCC-CC-ccccccccccc
Confidence            477888888888 5554 2 35677888888888888887533  36777888888888888873 33 36677888888


Q ss_pred             EccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCC
Q 036300          170 DLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIF  249 (269)
Q Consensus       170 ~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  249 (269)
                      ++..|.+++.  ..+..+++++.|++++|++++. + .+..+++|++|++++|++++ ++ .+.++++|++|++++|++ 
T Consensus       291 ~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l-  363 (384)
T d2omza2         291 ELNENQLEDI--SPISNLKNLTYLTLYFNNISDI-S-PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQI-  363 (384)
T ss_dssp             ECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCC-G-GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCC-
T ss_pred             cccccccccc--cccchhcccCeEECCCCCCCCC-c-ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcC-
Confidence            8888888742  3467889999999999999864 3 37889999999999999985 44 689999999999999999 


Q ss_pred             CCCCCccccccCcCCceecC
Q 036300          250 GGGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       250 ~~~~p~~~~~~l~~L~~L~l  269 (269)
                       ..+++  +.++++|+.|+|
T Consensus       364 -~~l~~--l~~l~~L~~L~L  380 (384)
T d2omza2         364 -SDLTP--LANLTRITQLGL  380 (384)
T ss_dssp             -CBCGG--GTTCTTCSEEEC
T ss_pred             -CCChh--hccCCCCCEeeC
Confidence             45553  789999999986

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=2.8e-17  Score=130.75  Aligned_cols=143  Identities=25%  Similarity=0.334  Sum_probs=122.5

Q ss_pred             cCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEE
Q 036300           90 ANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIF  169 (269)
Q Consensus        90 ~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  169 (269)
                      +++|++|++++| .+.+ ++ .++.+++|++|++++|++++ +| .+.++++|+.|++++|.+. .++ .+..++.++.+
T Consensus        67 l~~L~~L~L~~n-~i~~-l~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~~~~~-~~~-~l~~l~~l~~l  139 (210)
T d1h6ta2          67 LPNVTKLFLNGN-KLTD-IK-PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGIS-DIN-GLVHLPQLESL  139 (210)
T ss_dssp             CTTCCEEECCSS-CCCC-CG-GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCC-CCG-GGGGCTTCCEE
T ss_pred             CCCCCEEeCCCc-cccC-cc-ccccCccccccccccccccc-cc-ccccccccccccccccccc-ccc-ccccccccccc
Confidence            489999999999 6776 34 47899999999999999984 55 5889999999999999987 444 57889999999


Q ss_pred             EccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccC
Q 036300          170 DLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSN  245 (269)
Q Consensus       170 ~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  245 (269)
                      ++++|.+++.  ..+..+++|+.+++++|++++ ++ .+.++++|++|++++|++++ ++ .+.++++|++|++++
T Consensus       140 ~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         140 YLGNNKITDI--TVLSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             ECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             cccccccccc--ccccccccccccccccccccc-cc-cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence            9999999743  346788999999999999986 44 38899999999999999984 54 689999999999974

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=2.1e-16  Score=124.60  Aligned_cols=139  Identities=26%  Similarity=0.442  Sum_probs=117.9

Q ss_pred             cCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEE
Q 036300           90 ANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIF  169 (269)
Q Consensus        90 ~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  169 (269)
                      +++|++|++++| .+.+. + .++.+++|++|++++|.+. .++ .+.++++|+.|++++|.+.. ++ .+..+++|+.|
T Consensus        61 l~nL~~L~Ls~N-~l~~~-~-~l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~l~~~~~~~-~~-~~~~l~~L~~L  133 (199)
T d2omxa2          61 LNNLTQINFSNN-QLTDI-T-PLKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGLTLFNNQITD-ID-PLKNLTNLNRL  133 (199)
T ss_dssp             CTTCCEEECCSS-CCCCC-G-GGTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCSEE
T ss_pred             CCCcCcCccccc-cccCc-c-cccCCcccccccccccccc-ccc-cccccccccccccccccccc-cc-ccchhhhhHHh
Confidence            499999999999 77764 3 3899999999999999987 344 48899999999999999884 33 47889999999


Q ss_pred             EccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeE
Q 036300          170 DLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEM  241 (269)
Q Consensus       170 ~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  241 (269)
                      ++++|++.. ++ .+..+++|+.|++++|++++ ++ .++++++|++|++++|++++ ++ .++.+++|+.|
T Consensus       134 ~l~~n~l~~-~~-~l~~~~~L~~L~l~~n~l~~-l~-~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         134 ELSSNTISD-IS-ALSGLTSLQQLNFSSNQVTD-LK-PLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             ECCSSCCCC-CG-GGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             hhhhhhhcc-cc-cccccccccccccccccccC-Cc-cccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence            999999974 33 57889999999999999986 44 48899999999999999985 43 58889999875

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=3e-16  Score=126.03  Aligned_cols=162  Identities=22%  Similarity=0.371  Sum_probs=136.3

Q ss_pred             CCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEE
Q 036300           91 NSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFD  170 (269)
Q Consensus        91 ~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  170 (269)
                      .+|+.|++.+| .+.. ++ .+.++++|++|++++|.+++..|  +..+++|+++++++|.++ .++ .+..+++|++++
T Consensus        41 ~~L~~L~l~~~-~i~~-l~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~-~i~-~l~~l~~L~~l~  113 (227)
T d1h6ua2          41 DGITTLSAFGT-GVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLD  113 (227)
T ss_dssp             HTCCEEECTTS-CCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG-GGTTCTTCCEEE
T ss_pred             CCcCEEECCCC-CCCc-ch-hHhcCCCCcEeecCCceeecccc--cccccccccccccccccc-ccc-cccccccccccc
Confidence            88999999999 6765 44 68999999999999999985433  889999999999999998 555 578999999999


Q ss_pred             ccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCCCC
Q 036300          171 LSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPIFG  250 (269)
Q Consensus       171 l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  250 (269)
                      ++++...+..  .+...+.++.+.++.+.+...  ..+..+++|++|++++|.++...  .+.++++|++|++++|++  
T Consensus       114 l~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l--  185 (227)
T d1h6ua2         114 LTSTQITDVT--PLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKI--  185 (227)
T ss_dssp             CTTSCCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCC--
T ss_pred             cccccccccc--hhccccchhhhhchhhhhchh--hhhccccccccccccccccccch--hhcccccceecccCCCcc--
Confidence            9999887543  356778999999999988743  34678899999999999987543  488999999999999999  


Q ss_pred             CCCCccccccCcCCceecC
Q 036300          251 GGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       251 ~~~p~~~~~~l~~L~~L~l  269 (269)
                      ..++  .+.++++|++|++
T Consensus       186 ~~l~--~l~~l~~L~~L~L  202 (227)
T d1h6ua2         186 SDIS--PLASLPNLIEVHL  202 (227)
T ss_dssp             CCCG--GGGGCTTCCEEEC
T ss_pred             CCCh--hhcCCCCCCEEEC
Confidence            4565  3789999999985

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=3.7e-16  Score=134.33  Aligned_cols=166  Identities=19%  Similarity=0.283  Sum_probs=134.9

Q ss_pred             ccccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEE
Q 036300           66 SQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRL  145 (269)
Q Consensus        66 ~~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  145 (269)
                      .++..+....+.+..+|.  +.. +++|+.|++++| .+.+..  .+..+++|+.|+++++++++..  .+..++.++.+
T Consensus       219 ~~L~~L~l~~n~l~~~~~--l~~-l~~L~~L~l~~n-~l~~~~--~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l  290 (384)
T d2omza2         219 TNLDELSLNGNQLKDIGT--LAS-LTNLTDLDLANN-QISNLA--PLSGLTKLTELKLGANQISNIS--PLAGLTALTNL  290 (384)
T ss_dssp             TTCCEEECCSSCCCCCGG--GGG-CTTCSEEECCSS-CCCCCG--GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEE
T ss_pred             CCCCEEECCCCCCCCcch--hhc-ccccchhccccC-ccCCCC--cccccccCCEeeccCcccCCCC--ccccccccccc
Confidence            344444444455666653  334 489999999999 677643  4788999999999999998533  37789999999


Q ss_pred             EccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccC
Q 036300          146 ALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFL  225 (269)
Q Consensus       146 ~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~  225 (269)
                      ++..|.+++ ++ .+..++++++|++++|++++..  .+..+++|+.|++++|++++ ++ .+..+++|++|++++|+++
T Consensus       291 ~~~~n~l~~-~~-~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~  364 (384)
T d2omza2         291 ELNENQLED-IS-PISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQIS  364 (384)
T ss_dssp             ECCSSCCSC-CG-GGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCC
T ss_pred             ccccccccc-cc-ccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCC
Confidence            999999984 33 4788999999999999998653  37889999999999999985 55 5899999999999999999


Q ss_pred             CcchhhhhcCCCCCeEEccCCC
Q 036300          226 GGLVGSIEEMVSLKEMVVSNNP  247 (269)
Q Consensus       226 ~~~~~~~~~l~~L~~L~l~~N~  247 (269)
                      +..|  +.++++|++|++++|.
T Consensus       365 ~l~~--l~~l~~L~~L~L~~Na  384 (384)
T d2omza2         365 DLTP--LANLTRITQLGLNDQA  384 (384)
T ss_dssp             BCGG--GTTCTTCSEEECCCEE
T ss_pred             CChh--hccCCCCCEeeCCCCc
Confidence            7654  8999999999999883

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=5.8e-17  Score=123.66  Aligned_cols=128  Identities=16%  Similarity=0.104  Sum_probs=82.3

Q ss_pred             ccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCC
Q 036300          112 IDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLL  191 (269)
Q Consensus       112 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  191 (269)
                      +.++.++++|+|++|+++ .++..+..+++|++|++++|.++ .++ .+..+++|++|++++|+++...+..+..+++|+
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             ccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCccccccccccc
Confidence            445566777777777776 44554566677777777777776 443 466677777777777777644444455667777


Q ss_pred             EEeCcCCcCCCcCc-hhhcCCCCCCEEEccCCccCCcc---hhhhhcCCCCCeEE
Q 036300          192 KLDLSYNNLQEKIP-KEIGNLHNVTFLDLRSNNFLGGL---VGSIEEMVSLKEMV  242 (269)
Q Consensus       192 ~L~ls~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~  242 (269)
                      .|++++|++..... ..+..+++|++|++++|.++...   +..+..+++|++||
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            77777777764211 34566777777777777765322   23566777777766

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.3e-16  Score=129.14  Aligned_cols=183  Identities=16%  Similarity=0.105  Sum_probs=139.0

Q ss_pred             cccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCC-CCCCCCCCCCCEEEccC-CcCCCCC
Q 036300           79 IEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKL-PIEPSKLVNLRRLALAG-NQINGQI  156 (269)
Q Consensus        79 ~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L~~-n~l~~~~  156 (269)
                      .++|..+    .+++++|++++| .+....+..|.++++|++|++++|.+...+ +..|.++++++++.+.. |.+....
T Consensus        21 ~~iP~~l----~~~l~~L~Ls~n-~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~   95 (242)
T d1xwdc1          21 TEIPSDL----PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN   95 (242)
T ss_dssp             SSCCSCS----CSCCSEEEEESC-CCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEEC
T ss_pred             CCcCCCC----CCCCCEEECcCC-cCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccc
Confidence            3456544    368999999999 676655557999999999999999987654 44688999999999865 6777666


Q ss_pred             ccccCCCCCCCEEEccCCcCCchhh-hhhcCcccCCEEeCcCCcCCCcCchhhcCCC-CCCEEEccCCccCCcchhhhhc
Q 036300          157 PASIGGLTKLLIFDLSRNNLSGSML-LTLGKLARLLKLDLSYNNLQEKIPKEIGNLH-NVTFLDLRSNNFLGGLVGSIEE  234 (269)
Q Consensus       157 p~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~  234 (269)
                      +..|..+++|+++++++|.+....+ ..+..+..+..+...++.+....+..+..++ .++.|++++|+++...+..+ .
T Consensus        96 ~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~-~  174 (242)
T d1xwdc1          96 PEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAF-N  174 (242)
T ss_dssp             TTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTT-T
T ss_pred             cccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccc-c
Confidence            7788999999999999999874333 2344556666667777777765556666554 78999999999985444444 4


Q ss_pred             CCCCCeE-EccCCCCCCCCCCccccccCcCCceecC
Q 036300          235 MVSLKEM-VVSNNPIFGGGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       235 l~~L~~L-~l~~N~l~~~~~p~~~~~~l~~L~~L~l  269 (269)
                      ..++.++ .+++|.+  ..+|...|.++++|++|++
T Consensus       175 ~~~l~~~~~l~~n~l--~~l~~~~f~~l~~L~~L~L  208 (242)
T d1xwdc1         175 GTQLDELNLSDNNNL--EELPNDVFHGASGPVILDI  208 (242)
T ss_dssp             TCCEEEEECTTCTTC--CCCCTTTTTTSCCCSEEEC
T ss_pred             chhhhcccccccccc--ccccHHHhcCCCCCCEEEC
Confidence            5565555 5788888  6788778999999999986

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=3.8e-17  Score=124.68  Aligned_cols=129  Identities=19%  Similarity=0.162  Sum_probs=109.0

Q ss_pred             CCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCC
Q 036300          135 EPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNV  214 (269)
Q Consensus       135 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L  214 (269)
                      .+.++.++++|+|++|+++ .++..+..+++|++|++++|.++. ++ .+..+++|++|++++|+++...+..+..+++|
T Consensus        13 ~~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~-l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK-LD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   89 (162)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCE-EC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             hccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCc-cC-CcccCcchhhhhcccccccCCCcccccccccc
Confidence            4567889999999999999 678777889999999999999984 43 58889999999999999997555566789999


Q ss_pred             CEEEccCCccCCcc-hhhhhcCCCCCeEEccCCCCCCCCCCc---cccccCcCCceec
Q 036300          215 TFLDLRSNNFLGGL-VGSIEEMVSLKEMVVSNNPIFGGGLNG---IRWENLQNLEIWI  268 (269)
Q Consensus       215 ~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~p~---~~~~~l~~L~~L~  268 (269)
                      +.|++++|+++... ...+..+++|++|++++|++  ...|.   ..+..+|+|++||
T Consensus        90 ~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i--~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          90 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPV--TNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGG--GGSTTHHHHHHHHCTTCSEET
T ss_pred             ccceeccccccccccccccccccccchhhcCCCcc--ccccchHHHHHHHCCCcCeeC
Confidence            99999999998532 25788999999999999999  44553   2578899999987

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=2.9e-16  Score=114.26  Aligned_cols=101  Identities=27%  Similarity=0.366  Sum_probs=47.6

Q ss_pred             EEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCc
Q 036300          120 SLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNN  199 (269)
Q Consensus       120 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~  199 (269)
                      .|++++|+++ .++ .+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++ +| .+..+++|+.|++++|+
T Consensus         2 ~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           2 VLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             EEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCCc
Confidence            4455555554 232 2445555555555555554 344444455555555555555542 22 24444555555555555


Q ss_pred             CCCcC-chhhcCCCCCCEEEccCCccC
Q 036300          200 LQEKI-PKEIGNLHNVTFLDLRSNNFL  225 (269)
Q Consensus       200 l~~~~-p~~~~~l~~L~~L~L~~N~l~  225 (269)
                      +++.. ...+..+++|+.|++++|.++
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            54321 123444555555555555543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.66  E-value=3e-16  Score=114.19  Aligned_cols=120  Identities=23%  Similarity=0.229  Sum_probs=100.6

Q ss_pred             CEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCC
Q 036300          143 RRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSN  222 (269)
Q Consensus       143 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N  222 (269)
                      |+|++++|+++ .++ .+..+++|++|++++|+++ .+|..++.+++|+.|++++|++++ +| .+..+++|++|++++|
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCC
Confidence            68999999999 666 4889999999999999998 677789999999999999999985 55 4899999999999999


Q ss_pred             ccCCcc-hhhhhcCCCCCeEEccCCCCCCC-CCCccccccCcCCcee
Q 036300          223 NFLGGL-VGSIEEMVSLKEMVVSNNPIFGG-GLNGIRWENLQNLEIW  267 (269)
Q Consensus       223 ~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~-~~p~~~~~~l~~L~~L  267 (269)
                      +++... ...+..+++|++|++++|+++.. ..+......+|+|+.|
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            998643 36789999999999999999221 2333455668888876

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.57  E-value=3.5e-17  Score=129.04  Aligned_cols=151  Identities=21%  Similarity=0.246  Sum_probs=114.5

Q ss_pred             CCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEE
Q 036300           91 NSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFD  170 (269)
Q Consensus        91 ~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  170 (269)
                      ..++.+++.+...-...++..+..+++|++|++++|.++ .++ .+..+++|++|++++|.++ .+|..+..+++|++|+
T Consensus        23 ~~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~   99 (198)
T d1m9la_          23 TEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELW   99 (198)
T ss_dssp             TTCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEE
T ss_pred             cccceeeeecccCchhhhhhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-cccccccccccccccc
Confidence            345667776552223445667888999999999999998 454 5888999999999999998 6676555667899999


Q ss_pred             ccCCcCCchhhhhhcCcccCCEEeCcCCcCCCcCc-hhhcCCCCCCEEEccCCccCCcchh----------hhhcCCCCC
Q 036300          171 LSRNNLSGSMLLTLGKLARLLKLDLSYNNLQEKIP-KEIGNLHNVTFLDLRSNNFLGGLVG----------SIEEMVSLK  239 (269)
Q Consensus       171 l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~~----------~~~~l~~L~  239 (269)
                      +++|.++. ++ .+..+++|+.|++++|+++.... ..+..+++|++|++++|.++...+.          .+..+++|+
T Consensus       100 l~~N~i~~-l~-~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~  177 (198)
T d1m9la_         100 ISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLK  177 (198)
T ss_dssp             CSEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCC
T ss_pred             cccccccc-cc-cccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcC
Confidence            99999984 33 47788999999999999985321 4678899999999999987643322          267788999


Q ss_pred             eEEccCCCC
Q 036300          240 EMVVSNNPI  248 (269)
Q Consensus       240 ~L~l~~N~l  248 (269)
                      +||  +.++
T Consensus       178 ~LD--~~~I  184 (198)
T d1m9la_         178 KLD--GMPV  184 (198)
T ss_dssp             EES--SGGG
T ss_pred             EeC--CccC
Confidence            876  4444

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.5e-15  Score=126.08  Aligned_cols=155  Identities=22%  Similarity=0.217  Sum_probs=70.2

Q ss_pred             CCccEEEccCCCCceeccCccccCCCCCCEEEcccC-CCCCC-CCCCCCCCCCCCEEEccCCc-CCCC-Ccccc-CCCCC
Q 036300           91 NSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEK-GLTGK-LPIEPSKLVNLRRLALAGNQ-INGQ-IPASI-GGLTK  165 (269)
Q Consensus        91 ~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~-~p~~~~~l~~L~~L~L~~n~-l~~~-~p~~l-~~l~~  165 (269)
                      ++|++|++++| .+.+..+..++++++|++|+++++ .++.. +..-..++++|++|++++|. +++. +...+ ..+++
T Consensus        71 ~~L~~L~L~~~-~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~  149 (284)
T d2astb2          71 SKLQNLSLEGL-RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET  149 (284)
T ss_dssp             CCCSEEECTTC-BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTT
T ss_pred             CCccccccccc-CCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccc
Confidence            55555555555 444444444555555555555553 23211 01112334555555555542 2211 11111 12344


Q ss_pred             CCEEEccCC--cCCch-hhhhhcCcccCCEEeCcCC-cCCCcCchhhcCCCCCCEEEccCC-ccCCcchhhhhcCCCCCe
Q 036300          166 LLIFDLSRN--NLSGS-MLLTLGKLARLLKLDLSYN-NLQEKIPKEIGNLHNVTFLDLRSN-NFLGGLVGSIEEMVSLKE  240 (269)
Q Consensus       166 L~~L~l~~n--~l~~~-~~~~~~~l~~L~~L~ls~n-~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~  240 (269)
                      |+.|+++++  .++.. +...+..+++|++|++++| .+++.....+..+++|++|++++| .+++.....++++++|++
T Consensus       150 L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~  229 (284)
T d2astb2         150 ITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKT  229 (284)
T ss_dssp             CCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred             cchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCE
Confidence            555555543  22221 2222334455555555554 344444444555555555555553 344444444555555555


Q ss_pred             EEccCC
Q 036300          241 MVVSNN  246 (269)
Q Consensus       241 L~l~~N  246 (269)
                      |+++++
T Consensus       230 L~l~~~  235 (284)
T d2astb2         230 LQVFGI  235 (284)
T ss_dssp             EECTTS
T ss_pred             EeeeCC
Confidence            555555

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.51  E-value=9.3e-17  Score=126.53  Aligned_cols=145  Identities=23%  Similarity=0.290  Sum_probs=113.5

Q ss_pred             CCCEEEcccC--CCCCCCCCCCCCCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEe
Q 036300          117 NLQSLVLLEK--GLTGKLPIEPSKLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLD  194 (269)
Q Consensus       117 ~L~~L~L~~n--~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  194 (269)
                      .++.+++.+.  .+. .++.++..+++|++|++++|.++ .++ .+..+++|++|++++|.++ .++..+..+++|+.|+
T Consensus        24 ~~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~   99 (198)
T d1m9la_          24 EAEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELW   99 (198)
T ss_dssp             TCSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEE
T ss_pred             ccceeeeecccCchh-hhhhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-cccccccccccccccc
Confidence            3455666554  232 45567888999999999999999 565 5889999999999999998 5565555667899999


Q ss_pred             CcCCcCCCcCchhhcCCCCCCEEEccCCccCCcch-hhhhcCCCCCeEEccCCCCCCCCCCcc---------ccccCcCC
Q 036300          195 LSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLV-GSIEEMVSLKEMVVSNNPIFGGGLNGI---------RWENLQNL  264 (269)
Q Consensus       195 ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~p~~---------~~~~l~~L  264 (269)
                      +++|+++. + ..+..+++|+.|++++|+++.... ..+..+++|++|++++|++ ....+..         .+..+|+|
T Consensus       100 l~~N~i~~-l-~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l-~~~~~~~~~~~~~r~~vi~~lp~L  176 (198)
T d1m9la_         100 ISYNQIAS-L-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL-YNDYKENNATSEYRIEVVKRLPNL  176 (198)
T ss_dssp             CSEEECCC-H-HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHH-HHHHCTTTTHHHHHHHHHHHCSSC
T ss_pred             cccccccc-c-ccccccccccccccccchhccccccccccCCCccceeecCCCcc-ccCcccccchhhHHHHHHHHCCCc
Confidence            99999985 3 457888999999999999985432 5789999999999999988 3322211         25678999


Q ss_pred             ceec
Q 036300          265 EIWI  268 (269)
Q Consensus       265 ~~L~  268 (269)
                      +.||
T Consensus       177 ~~LD  180 (198)
T d1m9la_         177 KKLD  180 (198)
T ss_dssp             CEES
T ss_pred             CEeC
Confidence            9986

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.3e-14  Score=120.43  Aligned_cols=176  Identities=16%  Similarity=0.174  Sum_probs=130.5

Q ss_pred             CCccEEEccCCCCceec-cCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCC-cCCCC-CccccCCCCCCC
Q 036300           91 NSLDSLEFGSNPRLIGT-IPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGN-QINGQ-IPASIGGLTKLL  167 (269)
Q Consensus        91 ~~L~~L~l~~n~~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~-~p~~l~~l~~L~  167 (269)
                      ..|++||++++ .+... +...+..+++|++|+++++.+++..+..+..+++|++|++++| .+++. +...+..+++|+
T Consensus        46 ~~L~~LdLs~~-~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~  124 (284)
T d2astb2          46 FRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  124 (284)
T ss_dssp             BCCCEEECTTC-EECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCEEECCCC-ccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcc
Confidence            57999999988 56543 4556788999999999999988777777888999999999996 45522 222345789999


Q ss_pred             EEEccCC-cCCch-hhhhhc-CcccCCEEeCcCC--cCCCc-CchhhcCCCCCCEEEccCC-ccCCcchhhhhcCCCCCe
Q 036300          168 IFDLSRN-NLSGS-MLLTLG-KLARLLKLDLSYN--NLQEK-IPKEIGNLHNVTFLDLRSN-NFLGGLVGSIEEMVSLKE  240 (269)
Q Consensus       168 ~L~l~~n-~l~~~-~~~~~~-~l~~L~~L~ls~n--~l~~~-~p~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~  240 (269)
                      +|++++| .++.. +...+. ..+.|+.|+++++  .+++. +...+..+++|++|++++| .+++.....+.++++|++
T Consensus       125 ~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~  204 (284)
T d2astb2         125 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH  204 (284)
T ss_dssp             EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred             ccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCE
Confidence            9999986 45432 223333 3478999999876  34432 3333457899999999986 577777788899999999


Q ss_pred             EEccCC-CCCCCCCCccccccCcCCceecC
Q 036300          241 MVVSNN-PIFGGGLNGIRWENLQNLEIWIF  269 (269)
Q Consensus       241 L~l~~N-~l~~~~~p~~~~~~l~~L~~L~l  269 (269)
                      |++++| .+ ++.... .+.++++|+.|++
T Consensus       205 L~L~~C~~i-~~~~l~-~L~~~~~L~~L~l  232 (284)
T d2astb2         205 LSLSRCYDI-IPETLL-ELGEIPTLKTLQV  232 (284)
T ss_dssp             EECTTCTTC-CGGGGG-GGGGCTTCCEEEC
T ss_pred             EECCCCCCC-ChHHHH-HHhcCCCCCEEee
Confidence            999996 56 444443 5788999999875

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.47  E-value=1.3e-12  Score=110.21  Aligned_cols=76  Identities=22%  Similarity=0.258  Sum_probs=54.0

Q ss_pred             ccccccCCCCCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCCCCCCCCCCCCCEE
Q 036300           66 SQCKIFKPPLQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKLPIEPSKLVNLRRL  145 (269)
Q Consensus        66 ~~l~~~~~~~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  145 (269)
                      .+++.+..+.+.+.+||..+     .+|+.|++++| .+.. ++. +  .+.|++|++++|.+. .+|. ++.+++|++|
T Consensus        58 ~~L~~L~Ls~N~l~~lp~~~-----~~L~~L~l~~n-~l~~-l~~-l--p~~L~~L~L~~n~l~-~lp~-~~~l~~L~~L  125 (353)
T d1jl5a_          58 PHLESLVASCNSLTELPELP-----QSLKSLLVDNN-NLKA-LSD-L--PPLLEYLGVSNNQLE-KLPE-LQNSSFLKII  125 (353)
T ss_dssp             TTCSEEECCSSCCSSCCCCC-----TTCCEEECCSS-CCSC-CCS-C--CTTCCEEECCSSCCS-SCCC-CTTCTTCCEE
T ss_pred             CCCCEEECCCCCCcccccch-----hhhhhhhhhhc-ccch-hhh-h--ccccccccccccccc-cccc-hhhhccceee
Confidence            34555656667777888643     67888888888 4542 332 1  146899999999988 5664 6788999999


Q ss_pred             EccCCcCC
Q 036300          146 ALAGNQIN  153 (269)
Q Consensus       146 ~L~~n~l~  153 (269)
                      +++++.++
T Consensus       126 ~l~~~~~~  133 (353)
T d1jl5a_         126 DVDNNSLK  133 (353)
T ss_dssp             ECCSSCCS
T ss_pred             cccccccc
Confidence            99888765

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=3.5e-13  Score=101.63  Aligned_cols=108  Identities=19%  Similarity=0.142  Sum_probs=80.3

Q ss_pred             CCCCEEEcccCCCCCCCCCCCCCCCCCCEEEccCCc-CCCCCccccCCCCCCCEEEccCCcCCchhhhhhcCcccCCEEe
Q 036300          116 KNLQSLVLLEKGLTGKLPIEPSKLVNLRRLALAGNQ-INGQIPASIGGLTKLLIFDLSRNNLSGSMLLTLGKLARLLKLD  194 (269)
Q Consensus       116 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  194 (269)
                      ...+.++.+++.+. ..|..+..+++|++|++.+|+ ++..-+..|.++++|+.|++++|+++...+..|..+++|++|+
T Consensus         8 ~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3           8 HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             SSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             CCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence            34556777777777 567777778888888887654 7744456788888888888888888866677788888888888


Q ss_pred             CcCCcCCCcCchhhcCCCCCCEEEccCCccC
Q 036300          195 LSYNNLQEKIPKEIGNLHNVTFLDLRSNNFL  225 (269)
Q Consensus       195 ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~  225 (269)
                      |++|+++. +|.......+|+.|+|++|.+.
T Consensus        87 Ls~N~l~~-l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          87 LSFNALES-LSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             CCSSCCSC-CCSTTTCSCCCCEEECCSSCCC
T ss_pred             ccCCCCcc-cChhhhccccccccccCCCccc
Confidence            88888885 4444334457888888888875

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=5.2e-13  Score=100.66  Aligned_cols=109  Identities=19%  Similarity=0.173  Sum_probs=93.9

Q ss_pred             CCCCCCEEEccCCcCCCCCccccCCCCCCCEEEccCCc-CCchhhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCE
Q 036300          138 KLVNLRRLALAGNQINGQIPASIGGLTKLLIFDLSRNN-LSGSMLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTF  216 (269)
Q Consensus       138 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~  216 (269)
                      .+...+.++..++.++ ..|..+..+++|++|++.+|+ ++...+..|..+++|+.|++++|+++...+..|..+++|++
T Consensus         6 ~c~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~   84 (156)
T d2ifga3           6 CPHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR   84 (156)
T ss_dssp             CCSSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCE
T ss_pred             CcCCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccc
Confidence            4455677999999988 778889999999999998774 88666778999999999999999999877888999999999


Q ss_pred             EEccCCccCCcchhhhhcCCCCCeEEccCCCC
Q 036300          217 LDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPI  248 (269)
Q Consensus       217 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  248 (269)
                      |+|++|+++...+..+.. .+|++|+|++|++
T Consensus        85 L~Ls~N~l~~l~~~~~~~-~~l~~L~L~~Np~  115 (156)
T d2ifga3          85 LNLSFNALESLSWKTVQG-LSLQELVLSGNPL  115 (156)
T ss_dssp             EECCSSCCSCCCSTTTCS-CCCCEEECCSSCC
T ss_pred             eeccCCCCcccChhhhcc-ccccccccCCCcc
Confidence            999999999655555554 5799999999999

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.39  E-value=1.3e-11  Score=103.85  Aligned_cols=163  Identities=18%  Similarity=0.118  Sum_probs=103.1

Q ss_pred             CCCCcccCchhHHhhcCCccEEEccCCCCceeccCccccCCCCCCEEEcccCCCCCCC------------------CCCC
Q 036300           75 LQSPIEIPSSNWQKLANSLDSLEFGSNPRLIGTIPTSIDYLKNLQSLVLLEKGLTGKL------------------PIEP  136 (269)
Q Consensus        75 ~~~~~~lp~~~~~~l~~~L~~L~l~~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~------------------p~~~  136 (269)
                      .+....|+.     +++.|++|++++| .+. .+|. ++.+++|++|+++++.+....                  ...+
T Consensus        87 ~n~l~~l~~-----lp~~L~~L~L~~n-~l~-~lp~-~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l  158 (353)
T d1jl5a_          87 NNNLKALSD-----LPPLLEYLGVSNN-QLE-KLPE-LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPEL  158 (353)
T ss_dssp             SSCCSCCCS-----CCTTCCEEECCSS-CCS-SCCC-CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCC
T ss_pred             hcccchhhh-----hcccccccccccc-ccc-cccc-hhhhccceeeccccccccccccccccccchhhccccccccccc
Confidence            355556653     2467999999999 565 4564 678999999999988776321                  1223


Q ss_pred             CCCCCCCEEEccCCcCCCC------------------CccccCCCCCCCEEEccCCcCCchh------------------
Q 036300          137 SKLVNLRRLALAGNQINGQ------------------IPASIGGLTKLLIFDLSRNNLSGSM------------------  180 (269)
Q Consensus       137 ~~l~~L~~L~L~~n~l~~~------------------~p~~l~~l~~L~~L~l~~n~l~~~~------------------  180 (269)
                      ..++.++.+++.+|.+...                  ....+..++.|+.+++++|......                  
T Consensus       159 ~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~~~~~~~~~~~  238 (353)
T d1jl5a_         159 QNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTD  238 (353)
T ss_dssp             TTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSC
T ss_pred             cccccceecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4556677777776654321                  0112344566777776665433100                  


Q ss_pred             ------------------------h--------------hhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCC
Q 036300          181 ------------------------L--------------LTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSN  222 (269)
Q Consensus       181 ------------------------~--------------~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N  222 (269)
                                              +              .....+++|++|++++|+++ .+|.   .+++|+.|++++|
T Consensus       239 ~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~---~~~~L~~L~L~~N  314 (353)
T d1jl5a_         239 LPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPA---LPPRLERLIASFN  314 (353)
T ss_dssp             CCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSS
T ss_pred             cccccccccccccccccccccccccchhcccccccCccccccccCCCCCEEECCCCccC-cccc---ccCCCCEEECCCC
Confidence                                    0              00012357888888888887 4564   3567888888888


Q ss_pred             ccCCcchhhhhcCCCCCeEEccCCCCCCCCCCc
Q 036300          223 NFLGGLVGSIEEMVSLKEMVVSNNPIFGGGLNG  255 (269)
Q Consensus       223 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~p~  255 (269)
                      +|+ .+|+   .+.+|++|++++|++  ..+|.
T Consensus       315 ~L~-~l~~---~~~~L~~L~L~~N~L--~~lp~  341 (353)
T d1jl5a_         315 HLA-EVPE---LPQNLKQLHVEYNPL--REFPD  341 (353)
T ss_dssp             CCS-CCCC---CCTTCCEEECCSSCC--SSCCC
T ss_pred             cCC-cccc---ccCCCCEEECcCCcC--CCCCc
Confidence            887 4553   246788888888888  56764

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.25  E-value=5.7e-13  Score=113.06  Aligned_cols=111  Identities=18%  Similarity=0.190  Sum_probs=57.5

Q ss_pred             CCCCCCEEEccCCcCCCC-----CccccCCCCCCCEEEccCCcCCch----hhhhhcCcccCCEEeCcCCcCCCcCch--
Q 036300          138 KLVNLRRLALAGNQINGQ-----IPASIGGLTKLLIFDLSRNNLSGS----MLLTLGKLARLLKLDLSYNNLQEKIPK--  206 (269)
Q Consensus       138 ~l~~L~~L~L~~n~l~~~-----~p~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~ls~n~l~~~~p~--  206 (269)
                      .++.|++|++++|.++..     +...+..+++|++|++++|.++..    +...+...++|++|++++|.+.+....  
T Consensus       184 ~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l  263 (344)
T d2ca6a1         184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV  263 (344)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred             hhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHH
Confidence            345566666666665421     122344556666666666665432    223445556666666666666543211  


Q ss_pred             --hhc--CCCCCCEEEccCCccCCc----chhhhh-cCCCCCeEEccCCCC
Q 036300          207 --EIG--NLHNVTFLDLRSNNFLGG----LVGSIE-EMVSLKEMVVSNNPI  248 (269)
Q Consensus       207 --~~~--~l~~L~~L~L~~N~l~~~----~~~~~~-~l~~L~~L~l~~N~l  248 (269)
                        .+.  ..+.|++|++++|.++..    +...+. +.++|++|++++|.+
T Consensus       264 ~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~  314 (344)
T d2ca6a1         264 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF  314 (344)
T ss_dssp             HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred             HHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcC
Confidence              122  224566666666665532    222232 355666666666666

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.23  E-value=3.4e-12  Score=108.11  Aligned_cols=177  Identities=16%  Similarity=0.178  Sum_probs=128.1

Q ss_pred             cCCccEEEccCCCCceec----cCccccCCCCCCEEEcccCCCCCCCCCC-------------CCCCCCCCEEEccCCcC
Q 036300           90 ANSLDSLEFGSNPRLIGT----IPTSIDYLKNLQSLVLLEKGLTGKLPIE-------------PSKLVNLRRLALAGNQI  152 (269)
Q Consensus        90 ~~~L~~L~l~~n~~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~p~~-------------~~~l~~L~~L~L~~n~l  152 (269)
                      .++|+.|++++| .+...    +...+...++|++|++++|.+.......             ....+.|+.+.+++|.+
T Consensus        92 ~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i  170 (344)
T d2ca6a1          92 CPKLHTVRLSDN-AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL  170 (344)
T ss_dssp             CTTCCEEECCSC-CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC
T ss_pred             CCCccccccccc-ccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccc
Confidence            478999999999 67654    3445567899999999999875211101             13467899999999988


Q ss_pred             CCC----CccccCCCCCCCEEEccCCcCCch-----hhhhhcCcccCCEEeCcCCcCCCc----CchhhcCCCCCCEEEc
Q 036300          153 NGQ----IPASIGGLTKLLIFDLSRNNLSGS-----MLLTLGKLARLLKLDLSYNNLQEK----IPKEIGNLHNVTFLDL  219 (269)
Q Consensus       153 ~~~----~p~~l~~l~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~L  219 (269)
                      +..    +...+..++.|++|++++|.++..     +...+...++|+.|++++|.+...    +...+..+++|++|++
T Consensus       171 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~L  250 (344)
T d2ca6a1         171 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL  250 (344)
T ss_dssp             TGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEEC
T ss_pred             cccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhh
Confidence            733    233456778999999999999743     234466789999999999998643    3455678899999999


Q ss_pred             cCCccCCcch----hhhhc--CCCCCeEEccCCCCCCCC----CCcccc-ccCcCCceecC
Q 036300          220 RSNNFLGGLV----GSIEE--MVSLKEMVVSNNPIFGGG----LNGIRW-ENLQNLEIWIF  269 (269)
Q Consensus       220 ~~N~l~~~~~----~~~~~--l~~L~~L~l~~N~l~~~~----~p~~~~-~~l~~L~~L~l  269 (269)
                      ++|.+++.-.    ..+..  ...|++|++++|.+ +..    +.. .+ .+++.|++|++
T Consensus       251 s~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i-~~~~~~~l~~-~l~~~~~~L~~L~l  309 (344)
T d2ca6a1         251 NDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI-ELDAVRTLKT-VIDEKMPDLLFLEL  309 (344)
T ss_dssp             TTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCC-BHHHHHHHHH-HHHHHCTTCCEEEC
T ss_pred             hcCccCchhhHHHHHHhhhccCCCCCEEECCCCcC-ChHHHHHHHH-HHHccCCCCCEEEC
Confidence            9999986433    33333  36799999999999 332    111 22 35778888865

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=2.9e-11  Score=105.03  Aligned_cols=109  Identities=17%  Similarity=0.145  Sum_probs=52.7

Q ss_pred             CCCCEEEccCCcCCCCCcc----ccCCCCCCCEEEccCCcCCch----hhhhhc-CcccCCEEeCcCCcCCCc----Cch
Q 036300          140 VNLRRLALAGNQINGQIPA----SIGGLTKLLIFDLSRNNLSGS----MLLTLG-KLARLLKLDLSYNNLQEK----IPK  206 (269)
Q Consensus       140 ~~L~~L~L~~n~l~~~~p~----~l~~l~~L~~L~l~~n~l~~~----~~~~~~-~l~~L~~L~ls~n~l~~~----~p~  206 (269)
                      ..|+.+++++|.++.....    .+...++|++|++++|.+++.    ++..+. ..+.|++|++++|.+++.    ++.
T Consensus       312 ~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~  391 (460)
T d1z7xw1         312 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA  391 (460)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred             cccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHH
Confidence            3556666666655432211    223344566666666665432    122222 234466666666665532    223


Q ss_pred             hhcCCCCCCEEEccCCccCCcchhhh----h-cCCCCCeEEccCCCC
Q 036300          207 EIGNLHNVTFLDLRSNNFLGGLVGSI----E-EMVSLKEMVVSNNPI  248 (269)
Q Consensus       207 ~~~~l~~L~~L~L~~N~l~~~~~~~~----~-~l~~L~~L~l~~N~l  248 (269)
                      .+..+++|++|++++|+++......+    . ....|++|++.+|.+
T Consensus       392 ~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~  438 (460)
T d1z7xw1         392 TLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW  438 (460)
T ss_dssp             HHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCC
T ss_pred             HHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCC
Confidence            34445566666666666654322222    1 123466666666665

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=1.1e-10  Score=101.38  Aligned_cols=158  Identities=25%  Similarity=0.281  Sum_probs=112.4

Q ss_pred             cCCccEEEccCCCCceec-----cCccccCCCCCCEEEcccCCCCCC----CCCCCCCCCCCCEEEccCCcCCCCCcc--
Q 036300           90 ANSLDSLEFGSNPRLIGT-----IPTSIDYLKNLQSLVLLEKGLTGK----LPIEPSKLVNLRRLALAGNQINGQIPA--  158 (269)
Q Consensus        90 ~~~L~~L~l~~n~~l~~~-----~p~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~p~--  158 (269)
                      .+.++.+++++| .+...     ..........++.+++++|.+...    ....+...+.++.+++++|.+++....  
T Consensus       225 ~~~~~~l~~~~n-~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l  303 (460)
T d1z7xw1         225 KASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL  303 (460)
T ss_dssp             CTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHH
T ss_pred             cccccccchhhc-cccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchh
Confidence            367888888888 44321     233445567899999999887632    122345677899999999988632221  


Q ss_pred             --cc-CCCCCCCEEEccCCcCCchhhh----hhcCcccCCEEeCcCCcCCCc----Cchhhc-CCCCCCEEEccCCccCC
Q 036300          159 --SI-GGLTKLLIFDLSRNNLSGSMLL----TLGKLARLLKLDLSYNNLQEK----IPKEIG-NLHNVTFLDLRSNNFLG  226 (269)
Q Consensus       159 --~l-~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~ls~n~l~~~----~p~~~~-~l~~L~~L~L~~N~l~~  226 (269)
                        .+ .....|+.+++++|.++.....    .+...++|++|++++|++.+.    +++.+. ..+.|++|+|++|.|+.
T Consensus       304 ~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~  383 (460)
T d1z7xw1         304 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD  383 (460)
T ss_dssp             HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred             hccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCCh
Confidence              11 2346799999999998765433    344557899999999998753    333343 46789999999999985


Q ss_pred             c----chhhhhcCCCCCeEEccCCCC
Q 036300          227 G----LVGSIEEMVSLKEMVVSNNPI  248 (269)
Q Consensus       227 ~----~~~~~~~l~~L~~L~l~~N~l  248 (269)
                      .    +.+.+..+++|++|++++|++
T Consensus       384 ~~~~~l~~~l~~~~~L~~L~Ls~N~i  409 (460)
T d1z7xw1         384 SSCSSLAATLLANHSLRELDLSNNCL  409 (460)
T ss_dssp             HHHHHHHHHHHHCCCCCEEECCSSSC
T ss_pred             HHHHHHHHHHhcCCCCCEEECCCCcC
Confidence            3    455677789999999999999

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=5.5e-10  Score=84.19  Aligned_cols=63  Identities=22%  Similarity=0.297  Sum_probs=27.5

Q ss_pred             CcccCCEEeCcCCcCCCc--CchhhcCCCCCCEEEccCCccCCcchhhhhcCCCCCeEEccCCCC
Q 036300          186 KLARLLKLDLSYNNLQEK--IPKEIGNLHNVTFLDLRSNNFLGGLVGSIEEMVSLKEMVVSNNPI  248 (269)
Q Consensus       186 ~l~~L~~L~ls~n~l~~~--~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  248 (269)
                      .++.|++|++++|+++..  ++..+..+++|+.|++++|.|+...+-.+.....|+.+++++|++
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl  127 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSL  127 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTT
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCc
Confidence            344455555555544432  122334445555555555555432222222233455555555555

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=5.6e-10  Score=84.12  Aligned_cols=82  Identities=23%  Similarity=0.163  Sum_probs=44.5

Q ss_pred             CCCCCCCEEEccCCcCCch--hhhhhcCcccCCEEeCcCCcCCCcCchhhcCCCCCCEEEccCCccCCcch-------hh
Q 036300          161 GGLTKLLIFDLSRNNLSGS--MLLTLGKLARLLKLDLSYNNLQEKIPKEIGNLHNVTFLDLRSNNFLGGLV-------GS  231 (269)
Q Consensus       161 ~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-------~~  231 (269)
                      ..++.|++|++++|+++..  ++..+..+++|+.|++++|.++...+-......+|+.|++++|.+.....       ..
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i  141 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI  141 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHH
Confidence            3455566666666666532  23345556666666666666664322222334456666666666654322       23


Q ss_pred             hhcCCCCCeEE
Q 036300          232 IEEMVSLKEMV  242 (269)
Q Consensus       232 ~~~l~~L~~L~  242 (269)
                      +..+++|+.||
T Consensus       142 ~~~~P~L~~LD  152 (162)
T d1koha1         142 RERFPKLLRLD  152 (162)
T ss_dssp             HTTSTTCCEET
T ss_pred             HHHCCCCCEEC
Confidence            45567777654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.30  E-value=8e-07  Score=66.62  Aligned_cols=89  Identities=16%  Similarity=0.136  Sum_probs=49.1

Q ss_pred             cCCCCCCCEEEccCCcCCch----hhhhhcCcccCCEEeCcCCcCCCc----CchhhcCCCCCCEEEccCCccCC-----
Q 036300          160 IGGLTKLLIFDLSRNNLSGS----MLLTLGKLARLLKLDLSYNNLQEK----IPKEIGNLHNVTFLDLRSNNFLG-----  226 (269)
Q Consensus       160 l~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~-----  226 (269)
                      +...+.|++|++++|.+...    +...+...+.|+.|++++|.+.+.    +-..+...++|++|++++|.+..     
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~  119 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV  119 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred             HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHH
Confidence            44455566666666655432    222334446666666666666542    12334555667777777665432     


Q ss_pred             --cchhhhhcCCCCCeEEccCCCC
Q 036300          227 --GLVGSIEEMVSLKEMVVSNNPI  248 (269)
Q Consensus       227 --~~~~~~~~l~~L~~L~l~~N~l  248 (269)
                        .+...+...++|+.|+++.+..
T Consensus       120 ~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_         120 EMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHHHHhCCCccEeeCcCCCc
Confidence              1334455567777777766543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.07  E-value=3.3e-06  Score=63.15  Aligned_cols=107  Identities=16%  Similarity=0.109  Sum_probs=75.9

Q ss_pred             CCCCCCCEEEccCC-cCCch----hhhhhcCcccCCEEeCcCCcCCCc----CchhhcCCCCCCEEEccCCccCCc----
Q 036300          161 GGLTKLLIFDLSRN-NLSGS----MLLTLGKLARLLKLDLSYNNLQEK----IPKEIGNLHNVTFLDLRSNNFLGG----  227 (269)
Q Consensus       161 ~~l~~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----  227 (269)
                      .+.+.|++|+++++ .++..    +...+...+.|++|++++|.+...    +...+...+.|++|++++|.++..    
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            45678999999874 46533    334566778999999999998742    334556678999999999999863    


Q ss_pred             chhhhhcCCCCCeEEccCCCCCCCCCC-------ccccccCcCCceecC
Q 036300          228 LVGSIEEMVSLKEMVVSNNPIFGGGLN-------GIRWENLQNLEIWIF  269 (269)
Q Consensus       228 ~~~~~~~l~~L~~L~l~~N~l~~~~~p-------~~~~~~l~~L~~L~l  269 (269)
                      +-..+...++|++|++++|.+  ..+.       ...+...+.|+.|++
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~--~~~g~~~~~~l~~~L~~n~sL~~l~l  138 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQ--SVLGNQVEMDMMMAIEENESLLRVGI  138 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSS--CCCCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred             HHHHHHhCCcCCEEECCCCcC--CCccHHHHHHHHHHHHhCCCccEeeC
Confidence            334566778999999999976  2221       124455677776653

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.83  E-value=9.3e-06  Score=60.39  Aligned_cols=89  Identities=11%  Similarity=0.082  Sum_probs=45.3

Q ss_pred             cCCCCCCCEEEccCCcCCchh----hhhhcCcccCCEEeCcCCcCCCc----CchhhcCCCCCCEEEc--cCCccCC---
Q 036300          160 IGGLTKLLIFDLSRNNLSGSM----LLTLGKLARLLKLDLSYNNLQEK----IPKEIGNLHNVTFLDL--RSNNFLG---  226 (269)
Q Consensus       160 l~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~L--~~N~l~~---  226 (269)
                      +...+.|++|++++|.++...    ...+...+.++.+++++|.+...    +...+...++|+.++|  ++|.+..   
T Consensus        42 l~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~  121 (166)
T d1io0a_          42 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVE  121 (166)
T ss_dssp             HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHH
T ss_pred             HhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHH
Confidence            344555555666655554322    22333445666666666655432    1233445556665444  3445543   


Q ss_pred             -cchhhhhcCCCCCeEEccCCCC
Q 036300          227 -GLVGSIEEMVSLKEMVVSNNPI  248 (269)
Q Consensus       227 -~~~~~~~~l~~L~~L~l~~N~l  248 (269)
                       .+.+.+...++|+.|+++.+..
T Consensus       122 ~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_         122 MEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHHhCCCcCEEeCcCCCC
Confidence             2334455566777777665543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.59  E-value=6.6e-06  Score=61.22  Aligned_cols=39  Identities=3%  Similarity=0.067  Sum_probs=19.7

Q ss_pred             CCccEEEccCCCCceec----cCccccCCCCCCEEEcccCCCC
Q 036300           91 NSLDSLEFGSNPRLIGT----IPTSIDYLKNLQSLVLLEKGLT  129 (269)
Q Consensus        91 ~~L~~L~l~~n~~l~~~----~p~~l~~l~~L~~L~L~~n~l~  129 (269)
                      +.|++|++++++.+...    +...+...++|++|++++|.++
T Consensus        17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~   59 (166)
T d1io0a_          17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN   59 (166)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCccc
Confidence            55666666653233322    2233445555666666666554