Citrus Sinensis ID: 036307

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-----
Protein Sequence
MMFSLERPWSTCVSCECSNLHCDWKITAVKENRSNVFVICDITPMHTCNQRSVKLQGETKWIAAKFLHIWKQSEHREVDKLRNEIATTYGIKCPIWKLEAVDKMARFWLRTDHADGYAQLLQYKQEMENVNSRNIVIIETKSQQQFTADIFDRMFVFLYDTAYAFKTRCRMLVIVDGWEIDSPYKSVMLVAVCRDGNDSVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGIDEAVEEFLPSAVYRQCCFSLYTKMVHEFPGVTVHSPFWGACRSTNGNSFKNQMAVIETISMECYNWLKDTDCQKWALYSMPEWVKSTEITISATEQLRIWLLKQLDLNVEQRLWQVSGIPCPHACRCIDTWGDKLDTYVHRPMTVDEYRSAYGPGMNMLP
Secondary Structure (PSIPRED)
cEEEEEccccEEEEEEEEcccccEEEEEEEEccccEEEEEEcccccccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccEEEEEEEccccccccccEEEEEEEEcccHHHHHHccEEEEEEcccEEcccccHHHEEEEEEcccccEEEEEEEccccccHHcHHHHHHHHHHHcccccccccEEcccccccHHHHHHHHccccEEEccccHHccccccccccccccHHHHHHccccccccHHHHHHHHHHccHHHHHHHHccccccccccccccccEEEEEEEccHHHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHcccccccccccccHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEccccEEEEEEccccccEEEEEEEcccccEEEEEEEccccEcccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHcccEEcHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccEEEEEEccccccccHHHHHHHEEHHHHHHHHHHccccEEEEEccEEccccccEEEEEEEEcccccEEEEEEEEEEccccHHHHHHHHHHHHHccccccccEEEEEcccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccHHHHHHHHHHHHHHcHHHHHHHHHccHHHHHHHHccccccccHHcccHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHcccHHHHccccccHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mmfslerpwstcvscecsnlhcdwkitavkenrsnvfvicditpmhtcnqrsvklQGETKWIAAKFLHIWKQSEHREVDKLRNEIATtygikcpiwkLEAVDKMARFWLRTDHADGYAQLLQYKQEMENVNSRNIVIIETKSQQQFTADIFDRMFVFLYDTAYAFKTRCRMLVIVdgweidspyKSVMLVAVCrdgndsvlpIAFCEVVEENLDSWAFFLKNLNYGlrlergeglcimgdgdngIDEAVEEFLPSAVYRQCCFSLYTKMvhefpgvtvhspfwgacrstngnsfkNQMAVIETISMECYNwlkdtdcqkwalysmpewvksTEITISATEQLRIWLLKQLDLNVEQRLwqvsgipcphacrcidtwgdkldtyvhrpmtvdeyrsaygpgmnmlp
Flexible Loop (DISEMBL)
mmfslerpwstcvscECSNLHCDWKITAVKENRSNVFVICDITPMHTCNQRSVKLQGETKWIAAKFLHIWKQSEHREVDKLRNEIattygikcpiwkLEAVDKMARFWLRTDHADGYAQLLQYKQEMENVNSRNIVIIETKSQQQFTADIFDRMFVFLYDTAYAFKTRCRMLVIVDGWEIDSPYKSVMLVAVCRDGNDSVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGIDEAVEEFLPSAVYRQCCFSLYTKMVHEFPGVTVHSPFWGACRSTNGNSFKNQMAVIETISMECYNWLKDTDCQKWALYSMPEWVKSTEITISATEQLRIWLLKQLDLNVEQRLWQVSGIPCPHACRCIDTWGDKLDTYVHRPMTVdeyrsaygpgmnmlp
Low Complexity Region (SEG)
MMFSLERPWSTCVSCECSNLHCDWKITAVKENRSNVFVICDITPMHTCNQRSVKLQGETKWIAAKFLHIWKQSEHREVDKLRNEIATTYGIKCPIWKLEAVDKMARFWLRTDHADGYAQLLQYKQEMENVNSRNIVIIETKSQQQFTADIFDRMFVFLYDTAYAFKTRCRMLVIVDGWEIDSPYKSVMLVAVCRDGNDSVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGIDEAVEEFLPSAVYRQCCFSLYTKMVHEFPGVTVHSPFWGACRSTNGNSFKNQMAVIETISMECYNWLKDTDCQKWALYSMPEWVKSTEITISATEQLRIWLLKQLDLNVEQRLWQVSGIPCPHACRCIDTWGDKLDTYVHRPMTVDEYRSAYGPGMNMLP
Disordered region (IsUnstruct)
******RPWSTCVSCECSNLHCDWKITAVKENRSNVFVICDITPMHTCNQRSVKLQGETKWIAAKFLHIWKQSEHREVDKLRNEIATTYGIKCPIWKLEAVDKMARFWLRTDHADGYAQLLQYKQEMENVNSRNIVIIETKSQQQFTADIFDRMFVFLYDTAYAFKTRCRMLVIVDGWEIDSPYKSVMLVAVCRDGNDSVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGIDEAVEEFLPSAVYRQCCFSLYTKMVHEFPGVTVHSPFWGACRSTNGNSFKNQMAVIETISMECYNWLKDTDCQKWALYSMPEWVKSTEITISATEQLRIWLLKQLDLNVEQRLWQVSGIPCPHACRCIDTWGDKLDTYVHRPMTVDEY************
Disordered Region (DISOPRED)
MMFSLERPWSTCVSCECSNLHCDWKITAVKENRSNVFVICDITPMHTCNQRSVKLQGETKWIAAKFLHIWKQSEHREVDKLRNEIATTYGIKCPIWKLEAVDKMARFWLRTDHADGYAQLLQYKQEMENVNSRNIVIIETKSQQQFTADIFDRMFVFLYDTAYAFKTRCRMLVIVDGWEIDSPYKSVMLVAVCRDGNDSVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGIDEAVEEFLPSAVYRQCCFSLYTKMVHEFPGVTVHSPFWGACRSTNGNSFKNQMAVIETISMECYNWLKDTDCQKWALYSMPEWVKSTEITISATEQLRIWLLKQLDLNVEQRLWQVSGIPCPHACRCIDTWGDKLDTYVHRPMTVDEYRSAYGPGMNMLP
Disordered Region (DISEMBL)
***********CVSCECSNLHCDWKITAVKENRSNVFVICDITPMHTCNQRSVKLQGETKWIAAKFLHIWKQSEHREVDKLRNEIATTYGIKCPIWKLEAVDKMARFWLRTDHADGYAQLLQYKQEMENVNSRNIVIIETKSQQQFTADIFDRMFVFLYDTAYAFKTRCRMLVIVDGWEIDSPYKSVMLVAVCRDGNDSVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGIDEAVEEFLPSAVYRQCCFSLYTKMVHEFPGVTVHSPFWGACRSTNGNSFKNQMAVIETISMECYNWLKDTDCQKWALYSMPEWVKSTEITISATEQLRIWLLKQLDLNVEQRLWQVSGIPCPHACRCIDTWGDKLDTYVHRPMTVDEYRSAYGPGMNMLP
Disordered Region (DISPRO)
MMFSLERPWSTCVSCECSNLHCDWKITAVKENRSNVFVICDITPMHTCNQRSVKLQGETKWIAAKFLHIWKQSEHREVDKLRNEIATTYGIKCPIWKLEAVDKMARFWLRTDHADGYAQLLQYKQEMENVNSRNIVIIETKSQQQFTADIFDRMFVFLYDTAYAFKTRCRMLVIVDGWEIDSPYKSVMLVAVCRDGNDSVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGIDEAVEEFLPSAVYRQCCFSLYTKMVHEFPGVTVHSPFWGACRSTNGNSFKNQMAVIETISMECYNWLKDTDCQKWALYSMPEWVKSTEITISATEQLRIWLLKQLDLNVEQRLWQVSGIPCPHACRCIDTWGDKLDTYVHRPMTVDEYRSAYGPGMNMLP
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMFSLERPWSTCVSCECSNLHCDWKITAVKENRSNVFVICDITPMHTCNQRSVKLQGETKWIAAKFLHIWKQSEHREVDKLRNEIATTYGIKCPIWKLEAVDKMARFWLRTDHADGYAQLLQYKQEMENVNSRNIVIIETKSQQQFTADIFDRMFVFLYDTAYAFKTRCRMLVIVDGWEIDSPYKSVMLVAVCRDGNDSVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGIDEAVEEFLPSAVYRQCCFSLYTKMVHEFPGVTVHSPFWGACRSTNGNSFKNQMAVIETISMECYNWLKDTDCQKWALYSMPEWVKSTEITISATEQLRIWLLKQLDLNVEQRLWQVSGIPCPHACRCIDTWGDKLDTYVHRPMTVDEYRSAYGPGMNMLP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	405
225429092	583	PREDICTED: uncharacterized protein LOC10	0.841	0.584	0.259	2e-27
53370698	1030	transposon protein, putative, mutator su	0.829	0.326	0.233	3e-27
297601393	1015	Os03g0648200 [Oryza sativa Japonica Grou	0.829	0.331	0.233	5e-27
225450448	768	PREDICTED: uncharacterized protein LOC10	0.770	0.406	0.25	7e-27
90265237	1030	H0322F07.9 [Oryza sativa Indica Group] g	0.829	0.326	0.230	7e-27
108710101	983	transposon protein, putative, Mutator su	0.829	0.341	0.233	1e-26
147780251	1076	hypothetical protein VITISV_037761 [Viti	0.770	0.289	0.25	2e-26
50511365	1006	putative polyprotein [Oryza sativa Japon	0.829	0.333	0.230	4e-26
224122824	580	predicted protein [Populus trichocarpa]	0.871	0.608	0.243	1e-25
224124326	580	predicted protein [Populus trichocarpa]	0.871	0.608	0.237	3e-25

>gi|225429092|ref|XP_002269076.1| PREDICTED: uncharacterized protein LOC100253276 isoform 1 [Vitis vinifera] gi|359475510|ref|XP_003631693.1| PREDICTED: uncharacterized protein LOC100253276 isoform 2 [Vitis vinifera] gi|147838852|emb|CAN72363.1| hypothetical protein VITISV_011058 [Vitis vinifera]

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/351 (25%), Positives = 155/351 (44%), Gaps = 10/351 (2%)

Query: 15  CECSNLHCDWKITAVKENRSNVFVICDITPMHTC--NQRSVKLQGETKWIAAKFLHIWKQ 72
            +C+   C W+I AVK   +  F I  +   HTC  N ++   Q    WI +      + 
Sbjct: 45  AKCATEGCPWRIRAVKLPNAPTFTIRSLEGTHTCGKNAQNGHHQASVDWIVSFIEERLRD 104

Query: 73  SEHREVDKLRNEIATTYGIKCPIWKLEAVDKMARFWLRTDHADGYAQLLQYKQEMENVNS 132
           + + +   + ++I   YGI  P  +     +     +     +GY  L  Y +E++  N 
Sbjct: 105 NINYKPKDILHDIHKQYGITIPYKQAWRAKERGLAAIYGSSEEGYCLLPAYCEEIKRANP 164

Query: 133 RNIVIIETKSQQQFTADIFDRMFVFLYDTAYAFKTRCRMLVIVDGWEIDSPYKSVMLVAV 192
            ++  + T        + F R+FV  Y + Y F   C  +V + G ++ S Y   +L A 
Sbjct: 165 GSVAEVFTSGAD----NRFQRLFVSFYASIYGFLNGCLPIVGLGGIQLKSKYLGTLLSAT 220

Query: 193 CRDGNDSVLPIAFCEVVEENLDSWAFFLKNLNYGLRL--ERGEGLCIMGDGDNGIDEAVE 250
             D +  + P+AF  V  EN +SW +FL  L   L +  E    L  + DG  GI +AV+
Sbjct: 221 SFDADGGLFPLAFGVVDAENDESWMWFLSELRKALEMNTENVPQLTFLSDGQKGIQDAVK 280

Query: 251 EFLPSAVYRQCCFSLYTKMVHEFPGVTVHSPFWGACRSTNGNSFKNQMAVIETISMECYN 310
              P++ +  C   L   +  EF    +    W A  +T   +FK +MA IE +S E   
Sbjct: 281 RKFPTSSHAFCMRHLSESIGKEFKNSRLVHLLWKAAYATTTIAFKEKMAEIEEVSSEAAK 340

Query: 311 WLKDTDCQKWALYSMPEWVKSTEITISATEQLRIWLLKQLDLNVEQRLWQV 361
           W++     +WAL    E  +   ++ S  E+   W+L+  +L + Q + Q+
Sbjct: 341 WIQQFPTSRWALVYF-EGTRYGHLS-SNIEEFNKWILEARELPIIQVIEQI 389

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|53370698|gb|AAU89193.1| transposon protein, putative, mutator sub-class [Oryza sativa Japonica Group]

 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 80/342 (23%), Positives = 149/342 (43%), Gaps = 6/342 (1%)

Query: 22  CDWKITAVKENRSNVFVICDITPMHTCNQRSVKLQGETKWIAAKFLHIWKQSEHREVDKL 81
           C W + A +++R+  FV+      HTC +  +  +  +KW+A K++  ++  E   +   
Sbjct: 367 CPWNLYASEDSRAKAFVVKTCDERHTCQKEWILKRCTSKWLAGKYIEAFRADEKMSLTSF 426

Query: 82  RNEIATTYGIKCPIWKLEAVDKMARFWLRTDHADGYAQLLQYKQEMENVNSRNIVIIETK 141
              +   + +     KL    ++A   +  D  + Y  L  Y +E+   N  +   +   
Sbjct: 427 AKTVQLQWNLTLSRSKLARARRIAMKTIHGDEVEQYKLLWDYGKELRRSNPGSSFFL--- 483

Query: 142 SQQQFTADIFDRMFVFLYDTAYAFKTRCRMLVIVDGWEIDSPYKSVMLVAVCRDGNDSVL 201
              +    +F + ++ +      F   CR L+ +DG  I + Y   +L AV  D ND + 
Sbjct: 484 ---KLDGSLFSQCYMSMDACKRGFLNGCRPLICLDGCHIKTKYGGQLLTAVGMDPNDCIY 540

Query: 202 PIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGIDEAVEEFLPSAVYRQC 261
           PIAF  V  E+L +W +FL+ L   L +E      IM D   G+  AV++  P + +R C
Sbjct: 541 PIAFAVVEVESLATWKWFLETLKNDLGIENTYPWTIMTDKQKGLIPAVQQVFPESEHRFC 600

Query: 262 CFSLYTKMVHEFPGVTVHSPFWGACRSTNGNSFKNQMAVIETISMECYNWLKDTDCQKWA 321
              LY+    +F G  + +  W   RS++   +   M V+  ++   Y WL+      W 
Sbjct: 601 VRHLYSNFQLQFKGEVLKNQLWACARSSSVQEWNKNMDVMRNLNKSAYEWLEKLPPNTWV 660

Query: 322 LYSMPEWVKSTEITISATEQLRIWLLKQLDLNVEQRLWQVSG 363
                E+ K   +  +  E    ++L+  +L +   L ++ G
Sbjct: 661 RAFFSEFPKCDILLNNNCEVFNKYILEARELPILTMLEKIKG 702

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297601393|ref|NP_001050777.2| Os03g0648200 [Oryza sativa Japonica Group] gi|255674744|dbj|BAF12691.2| Os03g0648200 [Oryza sativa Japonica Group]

 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 80/342 (23%), Positives = 149/342 (43%), Gaps = 6/342 (1%)

Query: 22  CDWKITAVKENRSNVFVICDITPMHTCNQRSVKLQGETKWIAAKFLHIWKQSEHREVDKL 81
           C W + A +++R+  FV+      HTC +  +  +  +KW+A K++  ++  E   +   
Sbjct: 352 CPWNLYASEDSRAKAFVVKTCDERHTCQKEWILKRCTSKWLAGKYIEAFRADEKMSLTSF 411

Query: 82  RNEIATTYGIKCPIWKLEAVDKMARFWLRTDHADGYAQLLQYKQEMENVNSRNIVIIETK 141
              +   + +     KL    ++A   +  D  + Y  L  Y +E+   N  +   +   
Sbjct: 412 AKTVQLQWNLTLSRSKLARARRIAMKTIHGDEVEQYKLLWDYGKELRRSNPGSSFFL--- 468

Query: 142 SQQQFTADIFDRMFVFLYDTAYAFKTRCRMLVIVDGWEIDSPYKSVMLVAVCRDGNDSVL 201
              +    +F + ++ +      F   CR L+ +DG  I + Y   +L AV  D ND + 
Sbjct: 469 ---KLDGSLFSQCYMSMDACKRGFLNGCRPLICLDGCHIKTKYGGQLLTAVGMDPNDCIY 525

Query: 202 PIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGIDEAVEEFLPSAVYRQC 261
           PIAF  V  E+L +W +FL+ L   L +E      IM D   G+  AV++  P + +R C
Sbjct: 526 PIAFAVVEVESLATWKWFLETLKNDLGIENTYPWTIMTDKQKGLIPAVQQVFPESEHRFC 585

Query: 262 CFSLYTKMVHEFPGVTVHSPFWGACRSTNGNSFKNQMAVIETISMECYNWLKDTDCQKWA 321
              LY+    +F G  + +  W   RS++   +   M V+  ++   Y WL+      W 
Sbjct: 586 VRHLYSNFQLQFKGEVLKNQLWACARSSSVQEWNKNMDVMRNLNKSAYEWLEKLPPNTWV 645

Query: 322 LYSMPEWVKSTEITISATEQLRIWLLKQLDLNVEQRLWQVSG 363
                E+ K   +  +  E    ++L+  +L +   L ++ G
Sbjct: 646 RAFFSEFPKCDILLNNNCEVFNKYILEARELPILTMLEKIKG 687

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450448|ref|XP_002276424.1| PREDICTED: uncharacterized protein LOC100251030 [Vitis vinifera]

 Score =  127 bits (320), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 82/328 (25%), Positives = 148/328 (45%), Gaps = 16/328 (4%)

Query: 3   FSLERPWSTCVSCECSNLHCDWKITAVKENRSNVFVICDITPMHTCNQRSVK--LQGETK 60
           F  ++  S  V+ +C    C W+I A + + + +  I  +   HTC    V    Q    
Sbjct: 228 FRYKKNDSHRVTVKCKAEGCPWRIHASRLSTTQLICIKKMNATHTCEGAVVTTGYQATRS 287

Query: 61  WIAAKFLHIWKQSEHREVDKLRNEIATTYGIKCPIWKLEAVDKMARFWLRTDHADGYAQL 120
           W+A+  +   K   + +   + N+I   YGI+   ++     ++A+  L+  + + Y+QL
Sbjct: 288 WVASIIMDKLKVFPNYKPKDIVNDIKQEYGIQLNYFQAWRGKEIAKEQLQGSYKEAYSQL 347

Query: 121 LQYKQEMENVNSRNIVIIETKSQQQFTADIFDRMFVFLYDTAYAFKTRCRMLVIVDGWEI 180
             + +++   N  +     TK    F      R+FV  + + Y F+  CR L+ +D   +
Sbjct: 348 PFFCEKIMETNPGSFATFTTKEDSSF-----HRLFVSFHASLYGFQQGCRPLLFLDSISL 402

Query: 181 DSPYKSVMLVAVCRDGNDSVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGD 240
            S Y+  +L A   DG+D V P+AF  V  E  D+W +FL  L   L   R   +  + D
Sbjct: 403 KSKYQGTLLAATAADGDDGVFPVAFSVVDAETDDNWHWFLLQLKSALPTSR--PITFVAD 460

Query: 241 GDNGIDEAVEEFLPSAVYRQCCFSLYTKMVHEFPGVTVH-------SPFWGACRSTNGNS 293
            + G+ E++ E    + +  C   L  +++ +  G   H         F+ A  +    S
Sbjct: 461 REKGLRESIAEIFQGSFHGYCLRYLTEQLLKDLKGQFSHEVKRLMVEDFYAAAYAPRPES 520

Query: 294 FKNQMAVIETISMECYNWLKDTDCQKWA 321
           F+  +  I++IS+E YNWL  ++   WA
Sbjct: 521 FQRCLETIKSISLEAYNWLIQSEPMNWA 548

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|90265237|emb|CAH67772.1| H0322F07.9 [Oryza sativa Indica Group] gi|90399190|emb|CAH68177.1| H0403D02.5 [Oryza sativa Indica Group]

 Score =  127 bits (320), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 79/342 (23%), Positives = 148/342 (43%), Gaps = 6/342 (1%)

Query: 22  CDWKITAVKENRSNVFVICDITPMHTCNQRSVKLQGETKWIAAKFLHIWKQSEHREVDKL 81
           C W + A +++R+  FV+      HTC +  +  +  +KW+A K++  ++  E   +   
Sbjct: 367 CPWNLYASEDSRAKAFVVKTYDERHTCQKEWILKRCTSKWLAGKYIEAFRADEKMSLTSF 426

Query: 82  RNEIATTYGIKCPIWKLEAVDKMARFWLRTDHADGYAQLLQYKQEMENVNSRNIVIIETK 141
              +   + +     KL    ++A   +  D  + Y  L  Y +E+   N      +   
Sbjct: 427 AKTVQLQWNLTPSRSKLARARRIAMKTMHGDEVEQYKLLWDYGKELRRSNPGTSFFL--- 483

Query: 142 SQQQFTADIFDRMFVFLYDTAYAFKTRCRMLVIVDGWEIDSPYKSVMLVAVCRDGNDSVL 201
              +    +F + ++ +      F   CR L+ +DG  I + Y   +L AV  D ND + 
Sbjct: 484 ---KLDGSLFSQCYMSMDACKRGFLNGCRPLICLDGCHIKTKYGGQLLTAVGMDPNDCIY 540

Query: 202 PIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGIDEAVEEFLPSAVYRQC 261
           PIAF  V  E+L +W +FL+ L   L +E      IM D   G+  AV++  P + +R C
Sbjct: 541 PIAFAVVEVESLATWKWFLETLKNDLGIENTYPWTIMTDKQKGLIPAVQQVFPESEHRFC 600

Query: 262 CFSLYTKMVHEFPGVTVHSPFWGACRSTNGNSFKNQMAVIETISMECYNWLKDTDCQKWA 321
              LY+    +F G  + +  W   RS++   +   M V+  ++   Y W++      W 
Sbjct: 601 VRHLYSNFQLQFKGEVLKNQLWACARSSSVQEWNKNMDVMRNLNKSAYEWIEKLPPNTWV 660

Query: 322 LYSMPEWVKSTEITISATEQLRIWLLKQLDLNVEQRLWQVSG 363
                E+ K   +  +  E    ++L+  +L +   L ++ G
Sbjct: 661 RAFFSEFPKCDILLNNNCEVFNKYILEARELPILTMLEKIKG 702

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|108710101|gb|ABF97896.1| transposon protein, putative, Mutator sub-class [Oryza sativa Japonica Group]

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/342 (23%), Positives = 149/342 (43%), Gaps = 6/342 (1%)

Query: 22  CDWKITAVKENRSNVFVICDITPMHTCNQRSVKLQGETKWIAAKFLHIWKQSEHREVDKL 81
           C W + A +++R+  FV+      HTC +  +  +  +KW+A K++  ++  E   +   
Sbjct: 333 CPWNLYASEDSRAKAFVVKTCDERHTCQKEWILKRCTSKWLAGKYIEAFRADEKMSLTSF 392

Query: 82  RNEIATTYGIKCPIWKLEAVDKMARFWLRTDHADGYAQLLQYKQEMENVNSRNIVIIETK 141
              +   + +     KL    ++A   +  D  + Y  L  Y +E+   N  +   +   
Sbjct: 393 AKTVQLQWNLTLSRSKLARARRIAMKTIHGDEVEQYKLLWDYGKELRRSNPGSSFFL--- 449

Query: 142 SQQQFTADIFDRMFVFLYDTAYAFKTRCRMLVIVDGWEIDSPYKSVMLVAVCRDGNDSVL 201
              +    +F + ++ +      F   CR L+ +DG  I + Y   +L AV  D ND + 
Sbjct: 450 ---KLDGSLFSQCYMSMDACKRGFLNGCRPLICLDGCHIKTKYGGQLLTAVGMDPNDCIY 506

Query: 202 PIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGIDEAVEEFLPSAVYRQC 261
           PIAF  V  E+L +W +FL+ L   L +E      IM D   G+  AV++  P + +R C
Sbjct: 507 PIAFAVVEVESLATWKWFLETLKNDLGIENTYPWTIMTDKQKGLIPAVQQVFPESEHRFC 566

Query: 262 CFSLYTKMVHEFPGVTVHSPFWGACRSTNGNSFKNQMAVIETISMECYNWLKDTDCQKWA 321
              LY+    +F G  + +  W   RS++   +   M V+  ++   Y WL+      W 
Sbjct: 567 VRHLYSNFQLQFKGEVLKNQLWACARSSSVQEWNKNMDVMRNLNKSAYEWLEKLPPNTWV 626

Query: 322 LYSMPEWVKSTEITISATEQLRIWLLKQLDLNVEQRLWQVSG 363
                E+ K   +  +  E    ++L+  +L +   L ++ G
Sbjct: 627 RAFFSEFPKCDILLNNNCEVFNKYILEARELPILTMLEKIKG 668

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147780251|emb|CAN65744.1| hypothetical protein VITISV_037761 [Vitis vinifera]

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/328 (25%), Positives = 148/328 (45%), Gaps = 16/328 (4%)

Query: 3   FSLERPWSTCVSCECSNLHCDWKITAVKENRSNVFVICDITPMHTCNQRSVKL--QGETK 60
           F  ++  S  V+ +C    C W+I A + + + +  I  +   HTC    V    Q    
Sbjct: 228 FRYKKNDSHRVTVKCKAEGCPWRIHASRLSTTQLICIKKMNATHTCEGAVVTTGYQATRS 287

Query: 61  WIAAKFLHIWKQSEHREVDKLRNEIATTYGIKCPIWKLEAVDKMARFWLRTDHADGYAQL 120
           W+A+  +   K   + +   + N+I   YGI+   ++     ++A+  L+  + + Y+QL
Sbjct: 288 WVASIIMDKLKVFPNYKPKDIVNDIKQEYGIQLNYFQAWRGKEIAKEQLQGSYKEAYSQL 347

Query: 121 LQYKQEMENVNSRNIVIIETKSQQQFTADIFDRMFVFLYDTAYAFKTRCRMLVIVDGWEI 180
             + +++   N  +     TK    F      R+FV  + + Y F+  CR L+ +D   +
Sbjct: 348 PFFCEKIMETNPGSFATFTTKEDSSF-----HRLFVSFHASLYGFQQGCRPLLFLDSISL 402

Query: 181 DSPYKSVMLVAVCRDGNDSVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGD 240
            S Y+  +L A   DG+D V P+AF  V  E  D+W +FL  L   L   R   +  + D
Sbjct: 403 KSKYQGTLLAATAADGDDGVFPVAFSVVDAETDDNWHWFLLQLKSALPTSR--PITFVAD 460

Query: 241 GDNGIDEAVEEFLPSAVYRQCCFSLYTKMVHEFPGVTVH-------SPFWGACRSTNGNS 293
            + G+ E++ E    + +  C   L  +++ +  G   H         F+ A  +    S
Sbjct: 461 REKGLRESIAEIFQGSFHGYCLRYLTEQLLKDLKGQFSHEVKRLMVEDFYAAAYAPRPES 520

Query: 294 FKNQMAVIETISMECYNWLKDTDCQKWA 321
           F+  +  I++IS+E YNWL  ++   WA
Sbjct: 521 FQRCLESIKSISLEAYNWLIQSEPMNWA 548

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|50511365|gb|AAT77288.1| putative polyprotein [Oryza sativa Japonica Group]

 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 79/342 (23%), Positives = 146/342 (42%), Gaps = 6/342 (1%)

Query: 22  CDWKITAVKENRSNVFVICDITPMHTCNQRSVKLQGETKWIAAKFLHIWKQSEHREVDKL 81
           C W +   +++R+  FV+      HTC +  +  +  +KW+A K++  ++  E   +   
Sbjct: 343 CPWNLYTSEDSRAKAFVVKTYDERHTCQKEWILKRCTSKWLAGKYIEAFRADEKMSLTSF 402

Query: 82  RNEIATTYGIKCPIWKLEAVDKMARFWLRTDHADGYAQLLQYKQEMENVNSRNIVIIETK 141
              +   + +     KL    ++A   +  D  + Y  L  Y +E+   N      +   
Sbjct: 403 AKTVQLQWNLTPSRSKLARARRIAMKTIHGDEVEQYKLLWDYGKELRRSNPGTSFFL--- 459

Query: 142 SQQQFTADIFDRMFVFLYDTAYAFKTRCRMLVIVDGWEIDSPYKSVMLVAVCRDGNDSVL 201
              +    +F + ++ +      F   CR L+ +DG  I + Y   +L AV  D ND + 
Sbjct: 460 ---KLDGSLFSQCYMSMDACKRGFLNGCRPLICLDGCHIKTKYGGQLLTAVGMDPNDCIY 516

Query: 202 PIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGIDEAVEEFLPSAVYRQC 261
           PIAF  V  E+L +W +FL+ L   L +E      IM D   G+  AV++  P + +R C
Sbjct: 517 PIAFAVVEVESLATWKWFLETLKNDLGIENTYPWTIMTDKQKGLIPAVQQVFPESEHRFC 576

Query: 262 CFSLYTKMVHEFPGVTVHSPFWGACRSTNGNSFKNQMAVIETISMECYNWLKDTDCQKWA 321
              LY+    +F G    +  W   RS++   +   M V+  ++   Y WL+      W 
Sbjct: 577 VRHLYSNFQLQFKGEVPKNQLWACARSSSVQEWNKNMDVMRNLNKSAYEWLEKLPPNTWV 636

Query: 322 LYSMPEWVKSTEITISATEQLRIWLLKQLDLNVEQRLWQVSG 363
                E+ K   +  +  E    ++L+  +L +   L ++ G
Sbjct: 637 RAFFSEFPKCDILLNNNCEVFNKYILEARELPILTMLEKIKG 678

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122824|ref|XP_002318925.1| predicted protein [Populus trichocarpa] gi|222857301|gb|EEE94848.1| predicted protein [Populus trichocarpa]

 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/370 (24%), Positives = 161/370 (43%), Gaps = 17/370 (4%)

Query: 3   FSLERPWSTCVSCECSNLHCDWKITAVKENRSNVFVICDITPMHTCNQRSVKL--QGETK 60
           F  ++  S  V+ +C    C W+I A + + + +  I  + P HTC    V    Q    
Sbjct: 43  FRYKKNDSHRVTVKCKAEGCPWRIHASRLSTTQLICIKKMNPTHTCEGSVVTTGHQATRS 102

Query: 61  WIAAKFLHIWKQSEHREVDKLRNEIATTYGIKCPIWKLEAVDKMARFWLRTDHADGYAQL 120
           W+A+      K   + +   + N+I   YGI+   ++     ++A+  L+  + + Y QL
Sbjct: 103 WVASIIKEKLKVFPNYKPKDIVNDIKHEYGIQLNYFQAWRGKEIAKEQLQGSYKEAYNQL 162

Query: 121 LQYKQEMENVNSRNIVIIETKSQQQFTADIFDRMFVFLYDTAYAFKTRCRMLVIVDGWEI 180
             +  ++   N  ++    TK    F     +R+FV  + + Y F   CR L+ +D   +
Sbjct: 163 PFFCDKIMETNPGSLATFTTKDDSSF-----ERLFVSFHASLYGFVQGCRPLLFLDSLPL 217

Query: 181 DSPYKSVMLVAVCRDGNDSVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGD 240
           +S Y+  +L A   DGNDSV P+AF  V  E  D+W +FL  L     L     +  + D
Sbjct: 218 NSKYQGTLLAATAADGNDSVFPVAFALVDAETNDNWHWFL--LQMKTALSTSCPITFVAD 275

Query: 241 GDNGIDEAVEEFLPSAVYRQCCFSLYTKMVHEFPGVTVH-------SPFWGACRSTNGNS 293
              G+ E++ E    + +  C   L  +++ +  G   H            A  +     
Sbjct: 276 KLKGLKESIAEIFKGSFHGYCLRYLSEQLIQDLKGQFSHEVKRLMIEDLNAAAYACRPEI 335

Query: 294 FKNQMAVIETISMECYNWLKDTDCQKWALYSMPEWVKSTEITISATEQLRIWLLKQLDLN 353
           F+  M  I++IS+E YNW+  ++ Q WA  S  +  +   +T +  E    W+    +L 
Sbjct: 336 FQRCMESIKSISLEAYNWILQSEPQSWA-NSFFQGARYNYMTSNFGEMFYSWVSDAHELP 394

Query: 354 VEQRLWQVSG 363
           + Q +  + G
Sbjct: 395 ITQMVDVIRG 404

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124326|ref|XP_002329995.1| predicted protein [Populus trichocarpa] gi|222871420|gb|EEF08551.1| predicted protein [Populus trichocarpa]

 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 88/370 (23%), Positives = 161/370 (43%), Gaps = 17/370 (4%)

Query: 3   FSLERPWSTCVSCECSNLHCDWKITAVKENRSNVFVICDITPMHTCNQRSVKL--QGETK 60
           F  ++  S  V+ +C    C W+I A + + + +  I  + P HTC    V    Q    
Sbjct: 43  FRYKKNDSHRVTVKCKAEGCPWRIHASRLSTTQLICIKKMNPAHTCEGSVVTTGHQATRS 102

Query: 61  WIAAKFLHIWKQSEHREVDKLRNEIATTYGIKCPIWKLEAVDKMARFWLRTDHADGYAQL 120
           W+A+      K   + +   + N+I   YGI+   ++     ++A+  L+  + + Y QL
Sbjct: 103 WVASIIKEKLKVFPNYKPKDIVNDIKQEYGIQLNYFQAWRGKEIAKEQLQGSYKEAYNQL 162

Query: 121 LQYKQEMENVNSRNIVIIETKSQQQFTADIFDRMFVFLYDTAYAFKTRCRMLVIVDGWEI 180
             +  ++   N  ++    TK    F     + +FV  + + Y F   CR L+ +D   +
Sbjct: 163 PFFCDKLMETNPGSLATFTTKDDSSF-----EGLFVSFHASLYGFVQGCRPLLFLDSLPL 217

Query: 181 DSPYKSVMLVAVCRDGNDSVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGD 240
           +S Y+  +L A   DGNDSV P+AF  V  E+ D+W +FL  L     L     +  + D
Sbjct: 218 NSKYQGTLLAATAADGNDSVFPVAFAVVDAESNDNWHWFLLQLKTA--LSTSCPITFVAD 275

Query: 241 GDNGIDEAVEEFLPSAVYRQCCFSLYTKMVHEFPGVTVH-------SPFWGACRSTNGNS 293
              G+ E++ E    + +  C   L  +++ +  G   H            A  +     
Sbjct: 276 KQKGLKESIAEIFKGSYHSYCLRYLSEQLIQDLKGQFSHEVKRLMIEDLNAAAYAYRPEI 335

Query: 294 FKNQMAVIETISMECYNWLKDTDCQKWALYSMPEWVKSTEITISATEQLRIWLLKQLDLN 353
           F+  +  I++IS+E YNW+  ++ Q WA  S  +  +   +T +  E    W+    +L 
Sbjct: 336 FQRCIESIKSISLEAYNWILQSEPQNWA-NSFFQGARYNYMTSNLGEMFYSWVSDAHELP 394

Query: 354 VEQRLWQVSG 363
           + Q +  + G
Sbjct: 395 ITQMVDVIRG 404

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	405
TAIR|locus:2197122	785	AT1G49920 "AT1G49920" [Arabido	0.735	0.379	0.226	4e-11
TAIR|locus:2014230	719	AT1G64260 "AT1G64260" [Arabido	0.375	0.211	0.245	9.3e-07
TAIR|locus:1006230722	750	AT1G64255 [Arabidopsis thalian	0.718	0.388	0.216	1.1e-06

TAIR|locus:2197122 AT1G49920 "AT1G49920" [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
 Identities = 74/326 (22%), Positives = 135/326 (41%)

Query:    16 ECSNLHCDWKITAVKENRSNVFVICDITPMHTCNQRSVK-LQGET-KWIAAKFLHIWKQS 73
             EC   HC W I A +     +F I + +  H C    +     E   +   + + +    
Sbjct:   220 ECERWHCKWSICASRREEDGLFEITECSGPHDCYPEHLNDFDAECIPFQIERVVRVQPTL 279

Query:    74 EHREVDKLRNE---IATTYGIK-CPIWKLE--AVDKMARFWLRTDHADGYAQLLQYKQEM 127
                E+DK   +    A    ++ C    +E   V  + RF+   D +    +L+   + M
Sbjct:   280 STAELDKWWEKKFGFALDQVVEHCSEGLVEDAKVKAIKRFFGDWDQS---FRLIP--KLM 334

Query:   128 ENVNSRNIVIIETKSQQQFTAD----IFDRMFVFLYDTAYAFKTRCRMLVIVDGWEIDSP 183
               ++S N ++++ +     T D     F  +F     +   F+  CR L++VD   +   
Sbjct:   335 SVLHSSNGLLVDWQ-YDSLTHDPEHASFRGLFWAFSQSIQGFQ-HCRPLIVVDTKNLGGK 392

Query:   184 YKSVMLVAVCRDGNDSVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDN 243
             YK  +++A   D  +   P+AF    E ++DSW +FL  +    ++ + +G+C++   D 
Sbjct:   393 YKMKLMIASAFDATNQYFPLAFAVTKEVSVDSWRWFLTRIRE--KVTQRQGICLISSPDP 450

Query:   244 GIDEAVEE-----FLPSAVYRQCCFSLYTKMVHEFPGVTVHSPFW--GACRSTNGNSFKN 296
              I   + E       P A +R C + L +K+    PG   +  F    A  S+    F +
Sbjct:   451 DILAVINEPGSQWKEPWAYHRFCLYHLCSKLCSVSPGFDYNMHFLVDEAGSSSQKEEFDS 510

Query:   297 QMAVIETISMECYNWLKDTDCQKWAL 322
              M  I+  + E + WL      +WAL
Sbjct:   511 YMKEIKERNPEAWKWLDQFPPHQWAL 536

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2014230 AT1G64260 "AT1G64260" [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 9.3e-07, Sum P(3) = 9.3e-07
 Identities = 39/159 (24%), Positives = 69/159 (43%)

Query:   169 CRMLVIVDGWEIDSPYKSVMLVAVCRDGNDSVLPIAFCEVVEENLDSWAFFLKNLNYGLR 228
             CR L++VD   ++  Y+  +++A   D  +   P+AF    E + DSW +F   +    +
Sbjct:   375 CRPLIVVDTKSLNGKYQLKLMIASGVDAANKFFPLAFAVTKEVSTDSWRWFFTKIRE--K 432

Query:   229 LERGEGLCIMGDGDNGIDEAVEE--FL---PSAVYRQCCFSLYTKMVHEFPGVTVHSPFW 283
             + + + LC++      I   V E   L   P A ++ C   L ++ +  F    + S   
Sbjct:   433 VTQRKDLCLISSPLRDIVAVVNEPGSLWQEPWAHHKFCLNHLRSQFLGVFRDYNLESLVE 492

Query:   284 GACRSTNGNSFKNQMAVIETISMECYNWLKDTDCQKWAL 322
              A  +     F + M  I+  + E + WL      KWAL
Sbjct:   493 QAGSTNQKEEFDSYMNDIKEKNPEAWKWLDQIPRHKWAL 531

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:1006230722 AT1G64255 [Arabidopsis thaliana (taxid:3702)]

 Score = 145 (56.1 bits), Expect = 1.1e-06, P = 1.1e-06
 Identities = 70/323 (21%), Positives = 136/323 (42%)

Query:    16 ECSNLHCDWKITAVKENRSNVFVICDITPMHTCNQ---RSVKLQGETKWI--AAKFLHIW 70
             EC    C W + A +  +  +  I   T  HTC+       K + ET  I  A +++   
Sbjct:   232 ECIRWKCKWSLGAARMKKHGLVEIIKYTGPHTCHPIVPEDFKSEFETDEIERAVRYMPTQ 291

Query:    71 KQSEHRE--VDKLRNEIATTYGIKCPIWKLEAVDKMARFWLRTDHADGYAQLLQYKQEME 128
               SE ++    K+  E+ T+  ++  + K +A+ ++   W ++   + + +L      M 
Sbjct:   292 TISELKKWWKKKIGYELETS-DVR--LAKEKAIKRVFGDWDQS--FEDFPKL------MS 340

Query:   129 NVNSRNIVIIETK----SQQQFTADIFDRMFVFLYDTAYAFKTRCRMLVIVDGWEIDSPY 184
              + S N ++++ K        F +  F  +F     +   F+  CR L++VD   ++  Y
Sbjct:   341 ALCSSNGLLVDWKYDLFPNPNFAS--FCGVFWAFPQSIEGFQ-HCRPLIVVDTKNLNCEY 397

Query:   185 KSVMLVAVCRDGNDSVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNG 244
             +  +++A   D  +   P+AF    E + D W +FL  +    ++ + +GLC++      
Sbjct:   398 QLKLMIASGVDAANKYFPLAFAVTKEVSTDIWRWFLTGIRE--KVTQRKGLCLISSPHPD 455

Query:   245 IDEAVEEF-----LPSAVYRQCCFSLYTKMVHEFPGVTVHSPFWGACRSTNGNSFKNQMA 299
             I   V E       P A +R      Y++    FP   + +    A  ++  + F + M 
Sbjct:   456 IIAVVNESGSQWQEPWAYHRFSLNHFYSQFSRVFPSFCLGARIRRAGSTSQKDEFVSYMN 515

Query:   300 VIETISMECYNWLKDTDCQKWAL 322
              I+  + E   WL      +WAL
Sbjct:   516 DIKEKNPEARKWLDQFPQNRWAL 538


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.136   0.449    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      405       405    0.0010  117 3  11 22  0.48    33
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  625 (66 KB)
  Total size of DFA:  328 KB (2163 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  33.09u 0.17s 33.26t   Elapsed:  00:00:02
  Total cpu time:  33.09u 0.17s 33.26t   Elapsed:  00:00:02
  Start:  Sat May 11 09:36:47 2013   End:  Sat May 11 09:36:49 2013

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: 4333578 transposon protein, putative, unclassified (983 aa) (Oryza sativa Japonica)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	405
pfam10551	88	pfam10551, MULE, MULE transposase domain	7e-11

>gnl|CDD|220806 pfam10551, MULE, MULE transposase domain

 Score = 58.2 bits (141), Expect = 7e-11
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 185 KSVMLVAVCRDGNDSVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNG 244
            +    AV  D +    P+AF  V +E+ +SW +FL+ L   L       L I+ DGD G
Sbjct: 5   TNKYKGAVGVDHHGQGFPLAFALVSDESEESWTWFLEGLKKALGGRP--PLTIISDGDKG 62

Query: 245 IDEAVEEFLPSAVYRQC 261
           + +A++E  P+A +R C
Sbjct: 63  LKKAIKEVFPNARHRLC 79

This domain was identified by Babu and colleagues. Length = 88

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	405
PLN03097	846	FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provis	100.0
PF10551	93	MULE: MULE transposase domain; InterPro: IPR018289	99.91
PF00872	381	Transposase_mut: Transposase, Mutator family; Inte	99.86
COG3328	379	Transposase and inactivated derivatives [DNA repli	99.63
smart00575	28	ZnF_PMZ plant mutator transposase zinc finger.	98.74
PF03108	67	DBD_Tnp_Mut: MuDR family transposase; InterPro: IP	98.6
PF08731	111	AFT: Transcription factor AFT; InterPro: IPR014842	97.86
PF03101	91	FAR1: FAR1 DNA-binding domain; InterPro: IPR004330	97.31
PF04434	40	SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc f	97.24
PF13610	140	DDE_Tnp_IS240: DDE domain	96.26
PF06782	470	UPF0236: Uncharacterised protein family (UPF0236);	96.2
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	96.18
PF01610	249	DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Aut	96.15
PF03050	271	DDE_Tnp_IS66: Transposase IS66 family ; InterPro:	94.3
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	94.27
PF04500	62	FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00	92.84
PF13565	77	HTH_32: Homeodomain-like domain	90.72
PHA02517	277	putative transposase OrfB; Reviewed	90.22
COG3316	215	Transposase and inactivated derivatives [DNA repli	89.69
PF00665	120	rve: Integrase core domain; InterPro: IPR001584 In	87.97
PF04937	153	DUF659: Protein of unknown function (DUF 659); Int	82.82

>PLN03097 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional

Probab=100.00  E-value=6.4e-59  Score=479.00  Aligned_cols=352  Identities=14%  Similarity=0.209  Sum_probs=282.4

Q ss_pred             eecCCCceEEEEEEeCCCCEEEEEeeCCCceeccccccc-cchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCCCCCH
Q 036307           17 CSNLHCDWKITAVKENRSNVFVICDITPMHTCNQRSVKL-QGETKWIAAKFLHIWKQSEHREVDKLRNEIATTYGIKCPI   95 (405)
Q Consensus        17 C~~~~Cpwrv~~~~~~~~~~~~I~~~~~~H~c~~~~~~~-~~ss~~ia~~~~~~i~~~~~~~~~~i~~~l~~~~g~~~s~   95 (405)
                      |+.+|||+++++.+..+ ++|.|+.++.+|||++..... ....+.+-..+...+....++..      ++.+.     .
T Consensus       156 ~tRtGC~A~m~Vk~~~~-gkW~V~~fv~eHNH~L~p~~~~~~~~r~~~~~~~~~~~~~~~v~~------~~~d~-----~  223 (846)
T PLN03097        156 CAKTDCKASMHVKRRPD-GKWVIHSFVKEHNHELLPAQAVSEQTRKMYAAMARQFAEYKNVVG------LKNDS-----K  223 (846)
T ss_pred             ccCCCCceEEEEEEcCC-CeEEEEEEecCCCCCCCCccccchhhhhhHHHHHhhhhccccccc------cchhh-----c
Confidence            56679999999987544 689999999999999933221 11111110110000000000000      00000     0


Q ss_pred             HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhCCCcEEEEEecccccccccccceEEEechhhHHHHHhcCceEEEE
Q 036307           96 WKLEAVDKMARFWLRTDHADGYAQLLQYKQEMENVNSRNIVIIETKSQQQFTADIFDRMFVFLYDTAYAFKTRCRMLVIV  175 (405)
Q Consensus        96 ~~~~~ak~~~~~~~~g~~~~~~~~l~~~~~~l~~~npg~~~~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~~vi~~  175 (405)
                      ...-+.|.+.   +.   ....+.|.+|+++++..||+++|.+++|++     ++++++||+++.++.+|.+ |++||.+
T Consensus       224 ~~~~~~r~~~---~~---~gD~~~ll~yf~~~q~~nP~Ffy~~qlDe~-----~~l~niFWaD~~sr~~Y~~-FGDvV~f  291 (846)
T PLN03097        224 SSFDKGRNLG---LE---AGDTKILLDFFTQMQNMNSNFFYAVDLGED-----QRLKNLFWVDAKSRHDYGN-FSDVVSF  291 (846)
T ss_pred             chhhHHHhhh---cc---cchHHHHHHHHHHHHhhCCCceEEEEEccC-----CCeeeEEeccHHHHHHHHh-cCCEEEE
Confidence            0011112211   11   123578999999999999999999999999     9999999999999999999 9999999


Q ss_pred             eceEEcCCCCceeEEEEEEcCCCCeEEEEEEEeeccccccHHHHHHHHhhcccccCCCCeEEEcCCcccHHHHHHhhccc
Q 036307          176 DGWEIDSPYKSVMLVAVCRDGNDSVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGIDEAVEEFLPS  255 (405)
Q Consensus       176 D~t~~~~~~~~~ll~~~g~d~~~~~~~~a~a~~~~E~~~~~~wfl~~l~~~~~~~~~~~~~iisD~~~~l~~Ai~~vfP~  255 (405)
                      |+||++|+|++||..++|+|+|++++++|+||+.+|+.++|.|+|++|+++|  ++..|.+||||++.+|.+||++|||+
T Consensus       292 DTTY~tN~y~~Pfa~FvGvNhH~qtvlfGcaLl~dEt~eSf~WLf~tfl~aM--~gk~P~tIiTDqd~am~~AI~~VfP~  369 (846)
T PLN03097        292 DTTYVRNKYKMPLALFVGVNQHYQFMLLGCALISDESAATYSWLMQTWLRAM--GGQAPKVIITDQDKAMKSVISEVFPN  369 (846)
T ss_pred             eceeeccccCcEEEEEEEecCCCCeEEEEEEEcccCchhhHHHHHHHHHHHh--CCCCCceEEecCCHHHHHHHHHHCCC
Confidence            9999999999999999999999999999999999999999999999999999  89999999999999999999999999


Q ss_pred             chhhhcHHHHHHhhhhhCCC-----Cccccchhhhhc-ccchhhHHHHHHHHH-hhCHHHHHHHhcc--Cccccccccc-
Q 036307          256 AVYRQCCFSLYTKMVHEFPG-----VTVHSPFWGACR-STNGNSFKNQMAVIE-TISMECYNWLKDT--DCQKWALYSM-  325 (405)
Q Consensus       256 a~~~~C~~Hi~~n~~~~~~~-----~~~~~~~~~~~~-~~~~~~f~~~~~~l~-~~~~~~~~~l~~~--~~~~W~~~~~-  325 (405)
                      +.|++|.|||++|+.+++..     +.+...|..+.+ +.++++|+..|..|. .++....+||+.+  .+++|+++|+ 
T Consensus       370 t~Hr~C~wHI~~~~~e~L~~~~~~~~~f~~~f~~cv~~s~t~eEFE~~W~~mi~ky~L~~n~WL~~LY~~RekWapaY~k  449 (846)
T PLN03097        370 AHHCFFLWHILGKVSENLGQVIKQHENFMAKFEKCIYRSWTEEEFGKRWWKILDRFELKEDEWMQSLYEDRKQWVPTYMR  449 (846)
T ss_pred             ceehhhHHHHHHHHHHHhhHHhhhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccccHHHHHHHHhHhhhhHHHhc
Confidence            99999999999999998763     478888888766 579999999999886 5788999999998  8999999998 


Q ss_pred             ----------------cccccc---------------------------------------------------ccccccH
Q 036307          326 ----------------PEWVKS---------------------------------------------------TEITISA  338 (405)
Q Consensus       326 ----------------n~~~~~---------------------------------------------------~~~tp~~  338 (405)
                                      |+++..                                                   ..|||.+
T Consensus       450 ~~F~agm~sTqRSES~Ns~fk~yv~~~tsL~~Fv~qye~~l~~~~ekE~~aD~~s~~~~P~l~t~~piEkQAs~iYT~~i  529 (846)
T PLN03097        450 DAFLAGMSTVQRSESINAFFDKYVHKKTTVQEFVKQYETILQDRYEEEAKADSDTWNKQPALKSPSPLEKSVSGVYTHAV  529 (846)
T ss_pred             ccccCCcccccccccHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCcccccccHHHHHHHHHhHHHH
Confidence                            111110                                                   6799999


Q ss_pred             HHHHHHHHHhccc------------------------------------cccccchhhhcCCCchhhhHHhhhcCC--Cc
Q 036307          339 TEQLRIWLLKQLD------------------------------------LNVEQRLWQVSGIPCPHACRCIDTWGD--KL  380 (405)
Q Consensus       339 ~~~l~~~~~~~~~------------------------------------~~vsC~~~~~~giPC~Hala~~~~~~~--~~  380 (405)
                      +++||+|+..+..                                    +.|+|++|+..||||+|||.||...++  .|
T Consensus       530 F~kFQ~El~~~~~~~~~~~~~dg~~~~y~V~~~~~~~~~~V~~d~~~~~v~CsC~kFE~~GILCrHaLkVL~~~~v~~IP  609 (846)
T PLN03097        530 FKKFQVEVLGAVACHPKMESQDETSITFRVQDFEKNQDFTVTWNQTKLEVSCICRLFEYKGYLCRHALVVLQMCQLSAIP  609 (846)
T ss_pred             HHHHHHHHHHhhheEEeeeccCCceEEEEEEEecCCCcEEEEEecCCCeEEeeccCeecCccchhhHHHHHhhcCcccCc
Confidence            9999999986521                                    123999999999999999999999997  89


Q ss_pred             cccccCCccHHHHH
Q 036307          381 DTYVHRPMTVDEYR  394 (405)
Q Consensus       381 ~~~v~~~yt~~~~~  394 (405)
                      +.||.++||+++-.
T Consensus       610 ~~YILkRWTKdAK~  623 (846)
T PLN03097        610 SQYILKRWTKDAKS  623 (846)
T ss_pred             hhhhhhhchhhhhh
Confidence            99999999999854

>PF10551 MULE: MULE transposase domain; InterPro: IPR018289 This entry represents a domain found in Mutator-like elements (MULE)-encoded tranposases, some of which also contain a zinc-finger motif [, ]

Probab=99.91  E-value=3.1e-24  Score=167.33  Aligned_cols=90  Identities=29%  Similarity=0.471  Sum_probs=86.0

Q ss_pred             ceEEcCCCCceeEE---EEEEcCCCCeEEEEEEEeeccccccHHHHHHHHhhcccccCCCCeEEEcCCcccHHHHHHhhc
Q 036307          177 GWEIDSPYKSVMLV---AVCRDGNDSVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGIDEAVEEFL  253 (405)
Q Consensus       177 ~t~~~~~~~~~ll~---~~g~d~~~~~~~~a~a~~~~E~~~~~~wfl~~l~~~~~~~~~~~~~iisD~~~~l~~Ai~~vf  253 (405)
                      |||++|+| |+++.   ++|+|++|+.+|+||+++++|+.++|+|||+.+++.+  +.. |.+||||++.|+.+||+++|
T Consensus         1 ~T~~tn~~-~~l~~~~~~~~~d~~~~~~~v~~~l~~~e~~~~~~~~l~~~~~~~--~~~-p~~ii~D~~~~~~~Ai~~vf   76 (93)
T PF10551_consen    1 GTYKTNKY-GPLLYLMIAVGIDGNGRGFPVAFALVSSESEESYEWFLEKLKEAM--PQK-PKVIISDFDKALINAIKEVF   76 (93)
T ss_pred             Cccccccc-cccceeceEEEEcCCCCEEEEEEEEEcCCChhhhHHHHHHhhhcc--ccC-ceeeeccccHHHHHHHHHHC
Confidence            79999999 98885   9999999999999999999999999999999999998  555 99999999999999999999


Q ss_pred             ccchhhhcHHHHHHhhh
Q 036307          254 PSAVYRQCCFSLYTKMV  270 (405)
Q Consensus       254 P~a~~~~C~~Hi~~n~~  270 (405)
                      |++.|++|.||+.+|++
T Consensus        77 P~~~~~~C~~H~~~n~k   93 (93)
T PF10551_consen   77 PDARHQLCLFHILRNIK   93 (93)
T ss_pred             CCceEehhHHHHHHhhC
Confidence            99999999999999974

This domain is also found in a transposase for the insertion sequence element IS256 in transposon Tn4001 [].

>PF00872 Transposase_mut: Transposase, Mutator family; InterPro: IPR001207 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element

Probab=99.86  E-value=9.5e-23  Score=198.37  Aligned_cols=224  Identities=15%  Similarity=0.228  Sum_probs=175.9

Q ss_pred             CCCCHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhCCCcEEEEEecccccccccccc
Q 036307           74 EHREVDKLRNEIATTYG-IKCPIWKLEAVDKMARFWLRTDHADGYAQLLQYKQEMENVNSRNIVIIETKSQQQFTADIFD  152 (405)
Q Consensus        74 ~~~~~~~i~~~l~~~~g-~~~s~~~~~~ak~~~~~~~~g~~~~~~~~l~~~~~~l~~~npg~~~~~~~~~~~~~~~~~f~  152 (405)
                      .+++.++|.+.++.-+| ..+|.+++.|..+.+.+.+           ..|...                          
T Consensus       113 ~G~Str~i~~~l~~l~g~~~~S~s~vSri~~~~~~~~-----------~~w~~R--------------------------  155 (381)
T PF00872_consen  113 KGVSTRDIEEALEELYGEVAVSKSTVSRITKQLDEEV-----------EAWRNR--------------------------  155 (381)
T ss_pred             cccccccccchhhhhhcccccCchhhhhhhhhhhhhH-----------HHHhhh--------------------------
Confidence            58899999999999999 7899999988776654322           111111                          


Q ss_pred             eEEEechhhHHHHHhcC-ceEEEEeceEEcCCCCc-----eeEEEEEEcCCCCeEEEEEEEeeccccccHHHHHHHHhhc
Q 036307          153 RMFVFLYDTAYAFKTRC-RMLVIVDGWEIDSPYKS-----VMLVAVCRDGNDSVLPIAFCEVVEENLDSWAFFLKNLNYG  226 (405)
Q Consensus       153 ~~f~~~~~~~~~~~~~~-~~vi~~D~t~~~~~~~~-----~ll~~~g~d~~~~~~~~a~a~~~~E~~~~~~wfl~~l~~~  226 (405)
                                 ... +. .++|++||+|.+.+.++     .+++++|+|.+|+..+||+.+.+.|+.++|.-||+.|+++
T Consensus       156 -----------~L~-~~~y~~l~iD~~~~kvr~~~~~~~~~~~v~iGi~~dG~r~vLg~~~~~~Es~~~W~~~l~~L~~R  223 (381)
T PF00872_consen  156 -----------PLE-SEPYPYLWIDGTYFKVREDGRVVKKAVYVAIGIDEDGRREVLGFWVGDRESAASWREFLQDLKER  223 (381)
T ss_pred             -----------ccc-cccccceeeeeeecccccccccccchhhhhhhhhcccccceeeeecccCCccCEeeecchhhhhc
Confidence                       001 14 68999999999887554     5899999999999999999999999999999999999999


Q ss_pred             ccccCCCCeEEEcCCcccHHHHHHhhcccchhhhcHHHHHHhhhhhCCCC---ccccchhhhhcccchhhHHHHHHHHHh
Q 036307          227 LRLERGEGLCIMGDGDNGIDEAVEEFLPSAVYRQCCFSLYTKMVHEFPGV---TVHSPFWGACRSTNGNSFKNQMAVIET  303 (405)
Q Consensus       227 ~~~~~~~~~~iisD~~~~l~~Ai~~vfP~a~~~~C~~Hi~~n~~~~~~~~---~~~~~~~~~~~~~~~~~f~~~~~~l~~  303 (405)
                      +   ...+..||+|+++||.+||+++||++.+|+|.+|+++|+.++++.+   .+.+.++.+..+.+.+++...++++.+
T Consensus       224 G---l~~~~lvv~Dg~~gl~~ai~~~fp~a~~QrC~vH~~RNv~~~v~~k~~~~v~~~Lk~I~~a~~~e~a~~~l~~f~~  300 (381)
T PF00872_consen  224 G---LKDILLVVSDGHKGLKEAIREVFPGAKWQRCVVHLMRNVLRKVPKKDRKEVKADLKAIYQAPDKEEAREALEEFAE  300 (381)
T ss_pred             c---ccccceeeccccccccccccccccchhhhhheechhhhhccccccccchhhhhhccccccccccchhhhhhhhccc
Confidence            4   6678999999999999999999999999999999999999999755   666777778788888887777777654


Q ss_pred             ----hCHHHHHHHhccCcccccccccccccccccccccHHHHHHHHHHhc
Q 036307          304 ----ISMECYNWLKDTDCQKWALYSMPEWVKSTEITISATEQLRIWLLKQ  349 (405)
Q Consensus       304 ----~~~~~~~~l~~~~~~~W~~~~~n~~~~~~~~tp~~~~~l~~~~~~~  349 (405)
                          ..|.+.+++++...+.|+..-|..-+....+|.|..+.++.++++.
T Consensus       301 ~~~~kyp~~~~~l~~~~~~~~tf~~fP~~~~~~i~TTN~iEsln~~irrr  350 (381)
T PF00872_consen  301 KWEKKYPKAAKSLEENWDELLTFLDFPPEHRRSIRTTNAIESLNKEIRRR  350 (381)
T ss_pred             ccccccchhhhhhhhccccccceeeecchhccccchhhhccccccchhhh
Confidence                5788888887644344433222111111457889999999999873

Transposases have been grouped into various families [, , ]. The mutator family of transposases consists of a number of elements that include, mutator from maize, IsT2 from Thiobacillus ferrooxidans, Is256 from Staphylococcus aureus, Is1201 from Lactobacillus helveticus, Is1081 from Mycobacterium bovis, IsRm3 from Rhizobium meliloti and others. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated

>COG3328 Transposase and inactivated derivatives [DNA replication, recombination, and repair]

Probab=99.63  E-value=7.4e-15  Score=140.47  Aligned_cols=221  Identities=14%  Similarity=0.165  Sum_probs=162.0

Q ss_pred             CCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhCCCcEEEEEecccccccccccce
Q 036307           74 EHREVDKLRNEIATTYGIKCPIWKLEAVDKMARFWLRTDHADGYAQLLQYKQEMENVNSRNIVIIETKSQQQFTADIFDR  153 (405)
Q Consensus        74 ~~~~~~~i~~~l~~~~g~~~s~~~~~~ak~~~~~~~~g~~~~~~~~l~~~~~~l~~~npg~~~~~~~~~~~~~~~~~f~~  153 (405)
                      .+++++++...++..++..++...+.+.-...++.+               .+++..-                      
T Consensus        99 ~gv~Tr~i~~~~~~~~~~~~s~~~iS~~~~~~~e~v---------------~~~~~r~----------------------  141 (379)
T COG3328          99 KGVTTREIEALLEELYGHKVSPSVISVVTDRLDEKV---------------KAWQNRP----------------------  141 (379)
T ss_pred             cCCcHHHHHHHHHHhhCcccCHHHhhhHHHHHHHHH---------------HHHHhcc----------------------
Confidence            578999999999999888888887776665554332               2222211                      


Q ss_pred             EEEechhhHHHHHhcCceEEEEeceEEcCC--CCceeEEEEEEcCCCCeEEEEEEEeeccccccHHHHHHHHhhcccccC
Q 036307          154 MFVFLYDTAYAFKTRCRMLVIVDGWEIDSP--YKSVMLVAVCRDGNDSVLPIAFCEVVEENLDSWAFFLKNLNYGLRLER  231 (405)
Q Consensus       154 ~f~~~~~~~~~~~~~~~~vi~~D~t~~~~~--~~~~ll~~~g~d~~~~~~~~a~a~~~~E~~~~~~wfl~~l~~~~~~~~  231 (405)
                                 .  +..+++++||+|++.+  -+..+++|+|++.+|+..++|+.+.+.|+ ..|.-||..|+..+   .
T Consensus       142 -----------l--~~~~~v~~D~~~~k~r~v~~~~~~ia~Gv~~eG~reilg~~~~~~e~-~~w~~~l~~l~~rg---l  204 (379)
T COG3328         142 -----------L--GDYPYVYLDAKYVKVRSVRNKAVYIAIGVTEEGRREILGIWVGVRES-KFWLSFLLDLKNRG---L  204 (379)
T ss_pred             -----------c--cCceEEEEecceeehhhhhhheeeeeeccCcccchhhhceeeecccc-hhHHHHHHHHHhcc---c
Confidence                       0  1578999999999988  34479999999999999999999999999 99999999999984   5


Q ss_pred             CCCeEEEcCCcccHHHHHHhhcccchhhhcHHHHHHhhhhhCCCCc---cccchhhhhcccchhhHHHHHHHH----Hhh
Q 036307          232 GEGLCIMGDGDNGIDEAVEEFLPSAVYRQCCFSLYTKMVHEFPGVT---VHSPFWGACRSTNGNSFKNQMAVI----ETI  304 (405)
Q Consensus       232 ~~~~~iisD~~~~l~~Ai~~vfP~a~~~~C~~Hi~~n~~~~~~~~~---~~~~~~~~~~~~~~~~f~~~~~~l----~~~  304 (405)
                      .....+++|+++||.+||.++||.+.+|+|..|+.+|+..+...++   ....+..+..+.+.++....+..+    ...
T Consensus       205 ~~v~l~v~Dg~~gl~~aI~~v~p~a~~Q~C~vH~~Rnll~~v~~k~~d~i~~~~~~I~~a~~~e~~~~~~~~~~~~w~~~  284 (379)
T COG3328         205 SDVLLVVVDGLKGLPEAISAVFPQAAVQRCIVHLVRNLLDKVPRKDQDAVLSDLRSIYIAPDAEEALLALLAFSELWGKR  284 (379)
T ss_pred             cceeEEecchhhhhHHHHHHhccHhhhhhhhhHHHhhhhhhhhhhhhHHHHhhhhhhhccCCcHHHHHHHHHHHHhhhhh
Confidence            5567788899999999999999999999999999999999988663   334444455555555555554443    334


Q ss_pred             CHHHHHHHhccCccccccccc-ccccccccccccHHHHHHHHHHhc
Q 036307          305 SMECYNWLKDTDCQKWALYSM-PEWVKSTEITISATEQLRIWLLKQ  349 (405)
Q Consensus       305 ~~~~~~~l~~~~~~~W~~~~~-n~~~~~~~~tp~~~~~l~~~~~~~  349 (405)
                      .|....++.+.--+.|....| ..| ....++.++.+.+++++.+.
T Consensus       285 yP~i~~~~~~~~~~~~~F~~fp~~~-r~~i~ttN~IE~~n~~ir~~  329 (379)
T COG3328         285 YPAILKSWRNALEELLPFFAFPSEI-RKIIYTTNAIESLNKLIRRR  329 (379)
T ss_pred             cchHHHHHHHHHHHhcccccCcHHH-HhHhhcchHHHHHHHHHHHH
Confidence            566666666543333322211 111 01357888999999987753

>smart00575 ZnF_PMZ plant mutator transposase zinc finger

Probab=98.74  E-value=3.6e-09  Score=61.97  Aligned_cols=27  Identities=37%  Similarity=0.529  Sum_probs=24.2

Q ss_pred             ccccchhhhcCCCchhhhHHhhhcCCC
Q 036307          353 NVEQRLWQVSGIPCPHACRCIDTWGDK  379 (405)
Q Consensus       353 ~vsC~~~~~~giPC~Hala~~~~~~~~  379 (405)
                      .+||++||..||||+|+|+|+...+++
T Consensus         2 ~CsC~~~~~~gipC~H~i~v~~~~~~~   28 (28)
T smart00575        2 TCSCRKFQLSGIPCRHALAAAIHIGLS   28 (28)
T ss_pred             cccCCCcccCCccHHHHHHHHHHhCCC
Confidence            468999999999999999999988763

>PF03108 DBD_Tnp_Mut: MuDR family transposase; InterPro: IPR004332 The plant MuDR transposase domain is present in plant proteins that are presumed to be the transposases for Mutator transposable elements [, ]

Probab=98.60  E-value=8.3e-08  Score=69.44  Aligned_cols=38  Identities=26%  Similarity=0.612  Sum_probs=35.9

Q ss_pred             eEEEEcCCCeEEEEEeecCCCceEEEEEEeCCCCEEEE
Q 036307            2 MFSLERPWSTCVSCECSNLHCDWKITAVKENRSNVFVI   39 (405)
Q Consensus         2 ~~~~~rs~~~r~~~~C~~~~Cpwrv~~~~~~~~~~~~I   39 (405)
                      .|++.+|+++|++++|...+|||+|+|++.++++.|+|
T Consensus        30 ~~~v~ksd~~r~~~~C~~~~C~Wrv~as~~~~~~~~~I   67 (67)
T PF03108_consen   30 EFKVKKSDKKRYRAKCKDKGCPWRVRASKRKRSDTFQI   67 (67)
T ss_pred             EEEEeccCCEEEEEEEcCCCCCEEEEEEEcCCCCEEEC
Confidence            48899999999999999999999999999999999986

The function of these proteins is unknown. More information about these proteins can be found at Protein of the Month: Transposase [].

>PF08731 AFT: Transcription factor AFT; InterPro: IPR014842 AFT (activator of iron transcription) is an iron regulated transcriptional activator that regulates the expression of genes involved in iron homeostasis

Probab=97.86  E-value=5.2e-05  Score=58.94  Aligned_cols=31  Identities=13%  Similarity=0.284  Sum_probs=28.8

Q ss_pred             CCCceEEEEEEeCCCCEEEEEeeCCCceecc
Q 036307           20 LHCDWKITAVKENRSNVFVICDITPMHTCNQ   50 (405)
Q Consensus        20 ~~Cpwrv~~~~~~~~~~~~I~~~~~~H~c~~   50 (405)
                      ..|||+|+|+.....+.|.|..+++.|+|++
T Consensus        81 ~~CPFriRA~yS~k~k~W~lvvvnn~HnH~l  111 (111)
T PF08731_consen   81 NTCPFRIRANYSKKNKKWTLVVVNNEHNHPL  111 (111)
T ss_pred             cCCCeEEEEEEEecCCeEEEEEecCCcCCCC
Confidence            4799999999999999999999999999974

This entry includes the paralogous pair of transcription factors AFT1 and AFT2.

>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants

Probab=97.31  E-value=0.00062  Score=52.21  Aligned_cols=30  Identities=10%  Similarity=0.207  Sum_probs=27.9

Q ss_pred             CCCceEEEEEEeCCCCEEEEEeeCCCceecc
Q 036307           20 LHCDWKITAVKENRSNVFVICDITPMHTCNQ   50 (405)
Q Consensus        20 ~~Cpwrv~~~~~~~~~~~~I~~~~~~H~c~~   50 (405)
                      +||||+|.+.+.+ ++.|.|..+..+|||++
T Consensus        60 tgC~a~i~v~~~~-~~~w~v~~~~~~HNH~L   89 (91)
T PF03101_consen   60 TGCKARINVKRRK-DGKWRVTSFVLEHNHPL   89 (91)
T ss_pred             cCCCEEEEEEEcc-CCEEEEEECcCCcCCCC
Confidence            6999999999987 67999999999999986

It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.

>PF04434 SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.24  E-value=0.00015  Score=46.35  Aligned_cols=27  Identities=19%  Similarity=0.308  Sum_probs=23.5

Q ss_pred             cccccccchhhhcCCCchhhhHHhhhc
Q 036307          350 LDLNVEQRLWQVSGIPCPHACRCIDTW  376 (405)
Q Consensus       350 ~~~~vsC~~~~~~giPC~Hala~~~~~  376 (405)
                      ....|+|..|+..|.||.|++|++...
T Consensus        13 ~~~~CsC~~~~~~~~~CkHi~av~~~~   39 (40)
T PF04434_consen   13 EQASCSCPYFQFRGGPCKHIVAVLLAL   39 (40)
T ss_pred             cccEeeCCCccccCCcchhHHHHHHhh
Confidence            346679999999999999999998764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the SWIM (SWI2/SNF2 and MuDR) zinc-binding domain, which is found in a variety of prokaryotic and eukaryotic proteins, such as mitogen-activated protein kinase kinase kinase 1 (or MEKK1). It is also found in the related protein MEX (MEKK1-related protein X), a testis-expressed protein that acts as an E3 ubiquitin ligase through the action of E2 ubiquitin-conjugating enzymes in the proteasome degradation pathway; the SWIM domain is critical for MEX ubiquitination []. SWIM domains are also found in the homologous recombination protein Sws1 [], as well as in several hypothetical proteins. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding

>PF13610 DDE_Tnp_IS240: DDE domain

Probab=96.26  E-value=0.0021  Score=53.65  Aligned_cols=80  Identities=21%  Similarity=0.096  Sum_probs=68.7

Q ss_pred             eEEEEeceEEcCCCCceeEEEEEEcCCCCeEEEEEEEeeccccccHHHHHHHHhhcccccCCCCeEEEcCCcccHHHHHH
Q 036307          171 MLVIVDGWEIDSPYKSVMLVAVCRDGNDSVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGIDEAVE  250 (405)
Q Consensus       171 ~vi~~D~t~~~~~~~~~ll~~~g~d~~~~~~~~a~a~~~~E~~~~~~wfl~~l~~~~~~~~~~~~~iisD~~~~l~~Ai~  250 (405)
                      +.+.+|-||.+.+-+ ..+..-.+|.+|+  +|++-|-..-+...=..||..+.+..   ...|..|+||+..+...|++
T Consensus         2 ~~w~~DEt~iki~G~-~~yl~~aiD~~~~--~l~~~ls~~Rd~~aA~~Fl~~~l~~~---~~~p~~ivtDk~~aY~~A~~   75 (140)
T PF13610_consen    2 DSWHVDETYIKIKGK-WHYLWRAIDAEGN--ILDFYLSKRRDTAAAKRFLKRALKRH---RGEPRVIVTDKLPAYPAAIK   75 (140)
T ss_pred             CEEEEeeEEEEECCE-EEEEEEeeccccc--chhhhhhhhcccccceeeccccceee---ccccceeecccCCccchhhh
Confidence            578999999876543 4566788999999  89999999999999999998888875   36789999999999999999


Q ss_pred             hhcccc
Q 036307          251 EFLPSA  256 (405)
Q Consensus       251 ~vfP~a  256 (405)
                      ++.|..
T Consensus        76 ~l~~~~   81 (140)
T PF13610_consen   76 ELNPEG   81 (140)
T ss_pred             hccccc
Confidence            999874

>PF06782 UPF0236: Uncharacterised protein family (UPF0236); InterPro: IPR009620 This is a group of proteins of unknown function

Probab=96.20  E-value=0.11  Score=52.34  Aligned_cols=93  Identities=22%  Similarity=0.332  Sum_probs=73.4

Q ss_pred             ccccccHHHHHHHHhhcccccCCCCeEEEcCCcccHHHHHHhhcccchhhhcHHHHHHhhhhhCCC-Cccccchhhhhcc
Q 036307          210 EENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGIDEAVEEFLPSAVYRQCCFSLYTKMVHEFPG-VTVHSPFWGACRS  288 (405)
Q Consensus       210 ~E~~~~~~wfl~~l~~~~~~~~~~~~~iisD~~~~l~~Ai~~vfP~a~~~~C~~Hi~~n~~~~~~~-~~~~~~~~~~~~~  288 (405)
                      ..+.+-|.-+...+.+..++....-+++.+|+...+.+++. .+|++.|.+..+|+.+.+.+.+.. +++.+.++++...
T Consensus       235 ~~~~~~~~~v~~~i~~~Y~~~~~~~iiingDGa~WIk~~~~-~~~~~~~~LD~FHl~k~i~~~~~~~~~~~~~~~~al~~  313 (470)
T PF06782_consen  235 ESAEEFWEEVLDYIYNHYDLDKTTKIIINGDGASWIKEGAE-FFPKAEYFLDRFHLNKKIKQALSHDPELKEKIRKALKK  313 (470)
T ss_pred             cchHHHHHHHHHHHHHhcCcccceEEEEeCCCcHHHHHHHH-hhcCceEEecHHHHHHHHHHHhhhChHHHHHHHHHHHh
Confidence            55677899999988888754444467889999999988776 999999999999999999988863 4566666777776


Q ss_pred             cchhhHHHHHHHHHh
Q 036307          289 TNGNSFKNQMAVIET  303 (405)
Q Consensus       289 ~~~~~f~~~~~~l~~  303 (405)
                      ....++...++.+.+
T Consensus       314 ~d~~~l~~~L~~~~~  328 (470)
T PF06782_consen  314 GDKKKLETVLDTAES  328 (470)
T ss_pred             cCHHHHHHHHHHHHH
Confidence            677777777777664

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=96.18  E-value=0.014  Score=40.86  Aligned_cols=42  Identities=14%  Similarity=0.112  Sum_probs=33.8

Q ss_pred             CCCeEEEEEeecCCCceEEEEEEeCCCCEEEEEeeCCCceec
Q 036307            8 PWSTCVSCECSNLHCDWKITAVKENRSNVFVICDITPMHTCN   49 (405)
Q Consensus         8 s~~~r~~~~C~~~~Cpwrv~~~~~~~~~~~~I~~~~~~H~c~   49 (405)
                      |.-.|-..+|+..+||++-.+.+..++....++++.++|||+
T Consensus        18 ~~~pRsYYrCt~~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~   59 (60)
T PF03106_consen   18 SPYPRSYYRCTHPGCPAKKQVQRSADDPNIVIVTYEGEHNHP   59 (60)
T ss_dssp             TTCEEEEEEEECTTEEEEEEEEEETTCCCEEEEEEES--SS-
T ss_pred             CceeeEeeeccccChhheeeEEEecCCCCEEEEEEeeeeCCC
Confidence            445777899999999999999998866678888999999996

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>PF01610 DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element

Probab=96.15  E-value=0.01  Score=54.63  Aligned_cols=94  Identities=16%  Similarity=0.169  Sum_probs=70.2

Q ss_pred             EEEeceEEcCCCCceeEEEEEEcC--CCCeEEEEEEEeeccccccHHHHHHHH-hhcccccCCCCeEEEcCCcccHHHHH
Q 036307          173 VIVDGWEIDSPYKSVMLVAVCRDG--NDSVLPIAFCEVVEENLDSWAFFLKNL-NYGLRLERGEGLCIMGDGDNGIDEAV  249 (405)
Q Consensus       173 i~~D~t~~~~~~~~~ll~~~g~d~--~~~~~~~a~a~~~~E~~~~~~wfl~~l-~~~~~~~~~~~~~iisD~~~~l~~Ai  249 (405)
                      |+||-+.....++.  ++-+.+|.  +++..   ++++++-+.++..-||..+ ...   ......+|++|...+..+||
T Consensus         1 lgiDE~~~~~g~~~--y~t~~~d~~~~~~~i---l~i~~~r~~~~l~~~~~~~~~~~---~~~~v~~V~~Dm~~~y~~~~   72 (249)
T PF01610_consen    1 LGIDEFAFRKGHRS--YVTVVVDLDTDTGRI---LDILPGRDKETLKDFFRSLYPEE---ERKNVKVVSMDMSPPYRSAI   72 (249)
T ss_pred             CeEeeeeeecCCcc--eeEEEEECccCCceE---EEEcCCccHHHHHHHHHHhCccc---cccceEEEEcCCCccccccc
Confidence            46777776543332  44455555  44332   3578888899988888877 333   24457899999999999999


Q ss_pred             HhhcccchhhhcHHHHHHhhhhhCC
Q 036307          250 EEFLPSAVYRQCCFSLYTKMVHEFP  274 (405)
Q Consensus       250 ~~vfP~a~~~~C~~Hi~~n~~~~~~  274 (405)
                      ++.||+|.+..--+|+++++.+.+.
T Consensus        73 ~~~~P~A~iv~DrFHvvk~~~~al~   97 (249)
T PF01610_consen   73 REYFPNAQIVADRFHVVKLANRALD   97 (249)
T ss_pred             cccccccccccccchhhhhhhhcch
Confidence            9999999999999999999887543

Transposases have been grouped into various families [, , ]. This family includes the IS204 [], IS1001 [], IS1096 [] and IS1165 [] transposases. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated

>PF03050 DDE_Tnp_IS66: Transposase IS66 family ; InterPro: IPR004291 Transposase proteins are necessary for efficient DNA transposition

Probab=94.30  E-value=0.2  Score=46.66  Aligned_cols=148  Identities=13%  Similarity=0.061  Sum_probs=89.8

Q ss_pred             chHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhCCCcEE
Q 036307           57 GETKWIAAKFLHIWKQSEHREVDKLRNEIATTYGIKCPIWKLEAVDKMARFWLRTDHADGYAQLLQYKQEMENVNSRNIV  136 (405)
Q Consensus        57 ~ss~~ia~~~~~~i~~~~~~~~~~i~~~l~~~~g~~~s~~~~~~ak~~~~~~~~g~~~~~~~~l~~~~~~l~~~npg~~~  136 (405)
                      .+.++++-.+...  -...++...+.+.+... |+++|.+++.+.-.++.+...           ...+.+.+.      
T Consensus         4 ~g~~~~a~i~~l~--~~~~lp~~r~~~~~~~~-G~~is~~ti~~~~~~~~~~l~-----------~~~~~l~~~------   63 (271)
T PF03050_consen    4 YGPSLLALIAYLK--YVYHLPLYRIQQMLEDL-GITISRGTIANWIKRVAEALK-----------PLYEALKEE------   63 (271)
T ss_pred             CCHHHHHHHHHHH--hcCCCCHHHHhhhhhcc-ceeeccchhHhHhhhhhhhhh-----------hhhhhhhhh------
Confidence            3444544443322  23456667777777766 999999999887666543321           111111110      


Q ss_pred             EEEecccccccccccceEEEechhhHHHHHhcCceEEEEeceEEc----CCCCc-eeEEEEEEcCCCCeEEEEEEEeecc
Q 036307          137 IIETKSQQQFTADIFDRMFVFLYDTAYAFKTRCRMLVIVDGWEID----SPYKS-VMLVAVCRDGNDSVLPIAFCEVVEE  211 (405)
Q Consensus       137 ~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~~vi~~D~t~~~----~~~~~-~ll~~~g~d~~~~~~~~a~a~~~~E  211 (405)
                                                  . . -.+|+.+|-|..+    ++.+. -+-++++-+      .+.|.+.++-
T Consensus        64 ----------------------------~-~-~~~~~~~DET~~~vl~~~~g~~~~~Wv~~~~~------~v~f~~~~sR  107 (271)
T PF03050_consen   64 ----------------------------L-R-SSPVVHADETGWRVLDKGKGKKGYLWVFVSPE------VVLFFYAPSR  107 (271)
T ss_pred             ----------------------------c-c-ccceeccCCceEEEeccccccceEEEeeeccc------eeeeeecccc
Confidence                                        1 1 3578899998877    44332 234443333      5556666666


Q ss_pred             ccccHHHHHHHHhhcccccCCCCeEEEcCCcccHHHHHHhhcccchhhhcHHHHHHhhhhhCCC
Q 036307          212 NLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGIDEAVEEFLPSAVYRQCCFSLYTKMVHEFPG  275 (405)
Q Consensus       212 ~~~~~~wfl~~l~~~~~~~~~~~~~iisD~~~~l~~Ai~~vfP~a~~~~C~~Hi~~n~~~~~~~  275 (405)
                      +.+.-.-+|.         + ..-+++||+-.+-..     +....|+.|..|+.|.+.+....
T Consensus       108 ~~~~~~~~L~---------~-~~GilvsD~y~~Y~~-----~~~~~hq~C~AH~~R~~~~~~~~  156 (271)
T PF03050_consen  108 SSKVIKEFLG---------D-FSGILVSDGYSAYNK-----LAGITHQLCWAHLRRDFQDAAES  156 (271)
T ss_pred             cccchhhhhc---------c-cceeeeccccccccc-----ccccccccccccccccccccccc
Confidence            6655444432         2 234899999988654     22789999999999998876654

This family includes the bacterial insertion sequence (IS) element, IS66, from Agrobacterium tumefaciens []. IS66 may cause genetic and structural variations of the T region and the vir region of the octopine Ti plasmids []. More information about these proteins can be found at Protein of the Month: Transposase [].

>smart00774 WRKY DNA binding domain

Probab=94.27  E-value=0.075  Score=36.83  Aligned_cols=41  Identities=15%  Similarity=0.084  Sum_probs=32.6

Q ss_pred             CCCeEEEEEeec-CCCceEEEEEEeCCCCEEEEEeeCCCcee
Q 036307            8 PWSTCVSCECSN-LHCDWKITAVKENRSNVFVICDITPMHTC   48 (405)
Q Consensus         8 s~~~r~~~~C~~-~~Cpwrv~~~~~~~~~~~~I~~~~~~H~c   48 (405)
                      |...|-..+|+. .+||++=.+.+..+++...++.+.++|||
T Consensus        18 s~~pRsYYrCt~~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h   59 (59)
T smart00774       18 SPFPRSYYRCTYSQGCPAKKQVQRSDDDPSVVEVTYEGEHTH   59 (59)
T ss_pred             CcCcceEEeccccCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence            444566789998 89999988887765556677899999998

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=92.84  E-value=0.2  Score=34.80  Aligned_cols=42  Identities=10%  Similarity=0.168  Sum_probs=21.8

Q ss_pred             EEEEcCCCeEEEEEeecC---CCceEEEEEEeCCCCEEEEEeeCCCcee
Q 036307            3 FSLERPWSTCVSCECSNL---HCDWKITAVKENRSNVFVICDITPMHTC   48 (405)
Q Consensus         3 ~~~~rs~~~r~~~~C~~~---~Cpwrv~~~~~~~~~~~~I~~~~~~H~c   48 (405)
                      |.+.+.......++|...   +|+++|...  .+++  .|.....+|||
T Consensus        18 y~~~~~~~~~~~WrC~~~~~~~C~a~~~~~--~~~~--~~~~~~~~HnH   62 (62)
T PF04500_consen   18 YYFNKRNDGKTYWRCSRRRSHGCRARLITD--AGDG--RVVRTNGEHNH   62 (62)
T ss_dssp             EEEEEE-SS-EEEEEGGGTTS----EEEEE----TT--EEEE-S---SS
T ss_pred             EECcCCCCCcEEEEeCCCCCCCCeEEEEEE--CCCC--EEEECCCccCC
Confidence            555565688889999983   899999998  2333  45566688987

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.

>PF13565 HTH_32: Homeodomain-like domain

Probab=90.72  E-value=0.78  Score=33.51  Aligned_cols=42  Identities=5%  Similarity=0.119  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHhCCCC--CHHHHHHH
Q 036307           60 KWIAAKFLHIWKQSEHREVDKLRNEIATTYGIKC--PIWKLEAV  101 (405)
Q Consensus        60 ~~ia~~~~~~i~~~~~~~~~~i~~~l~~~~g~~~--s~~~~~~a  101 (405)
                      ..+.+.+.+.+..+|.+++.+|.+.|.+++|+.+  |.+++||.
T Consensus        33 ~e~~~~i~~~~~~~p~wt~~~i~~~L~~~~g~~~~~S~~tv~R~   76 (77)
T PF13565_consen   33 PEQRERIIALIEEHPRWTPREIAEYLEEEFGISVRVSRSTVYRI   76 (77)
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCCccHhHHHHh
Confidence            3444677777788899999999999999999876  99999874

>PHA02517 putative transposase OrfB; Reviewed

Probab=90.22  E-value=4.4  Score=37.69  Aligned_cols=151  Identities=15%  Similarity=0.109  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHhc-CCCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh-hhCCCcEEEE
Q 036307           61 WIAAKFLHIWKQ-SEHREVDKLRNEIATTYGIKCPIWKLEAVDKMARFWLRTDHADGYAQLLQYKQEME-NVNSRNIVII  138 (405)
Q Consensus        61 ~ia~~~~~~i~~-~~~~~~~~i~~~l~~~~g~~~s~~~~~~ak~~~~~~~~g~~~~~~~~l~~~~~~l~-~~npg~~~~~  138 (405)
                      .+.+.+.+.+.. .+....+.|...|++. |+.+|.++++|..+..     |-...        ..... ....+...  
T Consensus        30 ~l~~~I~~i~~~~~~~~G~r~I~~~L~~~-g~~vs~~tV~Rim~~~-----gl~~~--------~~~k~~~~~~~~~~--   93 (277)
T PHA02517         30 WLKSEILRVYDENHQVYGVRKVWRQLNRE-GIRVARCTVGRLMKEL-----GLAGV--------LRGKKVRTTISRKA--   93 (277)
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHhc-CcccCHHHHHHHHHHc-----CCceE--------ecCCCcCCCCCCCC--
Confidence            455666666655 4788999999999765 9999999998775532     11000        00000 00000000  


Q ss_pred             EecccccccccccceEEEechhhHHHHHhcCceEEEEeceEEcCCCCceeEEEEEEcCCCCeEEEEEEEeeccccccHHH
Q 036307          139 ETKSQQQFTADIFDRMFVFLYDTAYAFKTRCRMLVIVDGWEIDSPYKSVMLVAVCRDGNDSVLPIAFCEVVEENLDSWAF  218 (405)
Q Consensus       139 ~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~~vi~~D~t~~~~~~~~~ll~~~g~d~~~~~~~~a~a~~~~E~~~~~~w  218 (405)
                      ..      .++...+-|-+.         .-..++..|.||..... |..++.+.+|...+ +++|+.+...++.+...-
T Consensus        94 ~~------~~n~~~r~f~~~---------~pn~~w~~D~t~~~~~~-g~~yl~~iiD~~sr-~i~~~~~~~~~~~~~~~~  156 (277)
T PHA02517         94 VA------APDRVNRQFVAT---------RPNQLWVADFTYVSTWQ-GWVYVAFIIDVFAR-RIVGWRVSSSMDTDFVLD  156 (277)
T ss_pred             CC------CCCcccCCCCCC---------CCCCeEEeceeEEEeCC-CCEEEEEecccCCC-eeeecccCCCCChHHHHH
Confidence            00      001111111111         14568999999986543 55666666776544 467788877777775444


Q ss_pred             HHHHHhhcccccCCCCeEEEcCCcccHH
Q 036307          219 FLKNLNYGLRLERGEGLCIMGDGDNGID  246 (405)
Q Consensus       219 fl~~l~~~~~~~~~~~~~iisD~~~~l~  246 (405)
                      +|+......  +...+.+|.||+.....
T Consensus       157 ~l~~a~~~~--~~~~~~i~~sD~G~~y~  182 (277)
T PHA02517        157 ALEQALWAR--GRPGGLIHHSDKGSQYV  182 (277)
T ss_pred             HHHHHHHhc--CCCcCcEeecccccccc
Confidence            444333332  22223577799987654

>COG3316 Transposase and inactivated derivatives [DNA replication, recombination, and repair]

Probab=89.69  E-value=0.63  Score=41.25  Aligned_cols=82  Identities=20%  Similarity=0.055  Sum_probs=61.6

Q ss_pred             ceEEEEeceEEcCCCCce-eEEEEEEcCCCCeEEEEEEEeeccccccHHHHHHHHhhcccccCCCCeEEEcCCcccHHHH
Q 036307          170 RMLVIVDGWEIDSPYKSV-MLVAVCRDGNDSVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGIDEA  248 (405)
Q Consensus       170 ~~vi~~D~t~~~~~~~~~-ll~~~g~d~~~~~~~~a~a~~~~E~~~~~~wfl~~l~~~~~~~~~~~~~iisD~~~~l~~A  248 (405)
                      ++++.+|-||.+.+-+.. |+-  .+|.+|  .++.+-|...-|...=.-||..+.+.-    +.|.+|+||+.+....|
T Consensus        70 ~~~w~vDEt~ikv~gkw~ylyr--Aid~~g--~~Ld~~L~~rRn~~aAk~Fl~kllk~~----g~p~v~vtDka~s~~~A  141 (215)
T COG3316          70 GDSWRVDETYIKVNGKWHYLYR--AIDADG--LTLDVWLSKRRNALAAKAFLKKLLKKH----GEPRVFVTDKAPSYTAA  141 (215)
T ss_pred             ccceeeeeeEEeeccEeeehhh--hhccCC--CeEEEEEEcccCcHHHHHHHHHHHHhc----CCCceEEecCccchHHH
Confidence            467889999987655443 333  445553  467777777777777778888877763    57889999999999999


Q ss_pred             HHhhcccchhh
Q 036307          249 VEEFLPSAVYR  259 (405)
Q Consensus       249 i~~vfP~a~~~  259 (405)
                      +.++-+.++|+
T Consensus       142 ~~~l~~~~ehr  152 (215)
T COG3316         142 LRKLGSEVEHR  152 (215)
T ss_pred             HHhcCcchhee
Confidence            99998866554

>PF00665 rve: Integrase core domain; InterPro: IPR001584 Integrase comprises three domains capable of folding independently and whose three-dimensional structures are known

Probab=87.97  E-value=2  Score=34.00  Aligned_cols=76  Identities=13%  Similarity=-0.070  Sum_probs=53.9

Q ss_pred             CceEEEEeceEEc-CCCCceeEEEEEEcCCCCeEEEEEEEeeccccccHHHHHHHHhhcccccCCCCeEEEcCCcccHHH
Q 036307          169 CRMLVIVDGWEID-SPYKSVMLVAVCRDGNDSVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGIDE  247 (405)
Q Consensus       169 ~~~vi~~D~t~~~-~~~~~~ll~~~g~d~~~~~~~~a~a~~~~E~~~~~~wfl~~l~~~~~~~~~~~~~iisD~~~~l~~  247 (405)
                      ....+.+|.++.. ...++..++.+.+|..-+. .+++.+-..++.+...-+|.......  +...|.+|+||+.+....
T Consensus         5 p~~~~~~D~~~~~~~~~~~~~~~~~~iD~~S~~-~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~p~~i~tD~g~~f~~   81 (120)
T PF00665_consen    5 PGERWQIDFTPMPIPDKGGRVYLLVFIDDYSRF-IYAFPVSSKETAEAALRALKRAIEKR--GGRPPRVIRTDNGSEFTS   81 (120)
T ss_dssp             TTTEEEEEEEEETGGCTT-CEEEEEEEETTTTE-EEEEEESSSSHHHHHHHHHHHHHHHH--S-SE-SEEEEESCHHHHS
T ss_pred             CCCEEEEeeEEEecCCCCccEEEEEEEECCCCc-EEEEEeeccccccccccccccccccc--ccccceeccccccccccc
Confidence            3568999999776 3455688888899886554 45677777778888877777655554  344489999999998764

However, the manner in which the N-terminal, catalytic, and C-terminal domains interact in the holoenzyme remains obscure. Numerous studies indicate that the enzyme functions as a multimer, minimally a dimer. The integrase proteins from Human immunodeficiency virus 1 (HIV-1) and Avian sarcoma virus (ASV) have been studied most carefully with respect to the structural basis of catalysis. Although the active site of ASV integrase does not undergo significant conformational changes on binding the required metal cofactor, that of HIV-1 does. This active site-mediated conformational change in HIV-1 reorganises the catalytic core and C-terminal domains and appears to promote an interaction that is favourable for catalysis []. Retroviral integrase is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. The presence of retrovirus integrase-related gene sequences in eukaryotes is known. Bacterial transposases involved in the transposition of the insertion sequence also belong to this group. HIV integrase catalyses the incorporation of virally derived DNA into the human genome. This unique step in the virus life cycle provides a variety of points for intervention and hence is an attractive target for the development of new therapeutics for the treatment of AIDS []. Substrate recognition by the retroviral integrase enzyme is critical for retroviral integration. To catalyse this recombination event, integrase must recognise and act on two types of substrates, viral DNA and host DNA, yet the necessary interactions exhibit markedly different degrees of specificity [].; GO: 0015074 DNA integration; PDB: 3AO3_A 3OVN_A 3AO5_A 3AO4_A 3AO1_A 1C6V_D 3HPG_A 3HPH_A 3OYD_A 3OYF_B ....

>PF04937 DUF659: Protein of unknown function (DUF 659); InterPro: IPR007021 These are transposase-like proteins with no known function

Probab=82.82  E-value=7.1  Score=32.98  Aligned_cols=99  Identities=11%  Similarity=0.160  Sum_probs=58.1

Q ss_pred             EEEEeceEEcCCCCceeEEEEEEcCCCCeEEEEEEEee-ccccccHHHHHHHHhhcccccCCCCeEEEcCCcccHHHHH-
Q 036307          172 LVIVDGWEIDSPYKSVMLVAVCRDGNDSVLPIAFCEVV-EENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGIDEAV-  249 (405)
Q Consensus       172 vi~~D~t~~~~~~~~~ll~~~g~d~~~~~~~~a~a~~~-~E~~~~~~wfl~~l~~~~~~~~~~~~~iisD~~~~l~~Ai-  249 (405)
                      -|..||-  ++.-+.+++.++...+.|-.|.=..-.-. ..+.+...-+|....+-+  |..+...||||-...+.+|- 
T Consensus        35 si~~DgW--td~~~~~lInf~v~~~~g~~Flksvd~s~~~~~a~~l~~ll~~vIeeV--G~~nVvqVVTDn~~~~~~a~~  110 (153)
T PF04937_consen   35 SIMSDGW--TDRKGRSLINFMVYCPEGTVFLKSVDASSIIKTAEYLFELLDEVIEEV--GEENVVQVVTDNASNMKKAGK  110 (153)
T ss_pred             EEEEecC--cCCCCCeEEEEEEEcccccEEEEEEecccccccHHHHHHHHHHHHHHh--hhhhhhHHhccCchhHHHHHH
Confidence            3444444  33344455555554455544433322111 123334444444444333  66677889999998888874 


Q ss_pred             --HhhcccchhhhcHHHHHHhhhhhCC
Q 036307          250 --EEFLPSAVYRQCCFSLYTKMVHEFP  274 (405)
Q Consensus       250 --~~vfP~a~~~~C~~Hi~~n~~~~~~  274 (405)
                        .+.+|...+..|..|-+.-+.+.+.
T Consensus       111 ~L~~k~p~ifw~~CaaH~inLmledi~  137 (153)
T PF04937_consen  111 LLMEKYPHIFWTPCAAHCINLMLEDIG  137 (153)
T ss_pred             HHHhcCCCEEEechHHHHHHHHHHHHh
Confidence              4558999999999999877766554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	405
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-10

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.9 bits (144), Expect = 9e-10
 Identities = 67/468 (14%), Positives = 135/468 (28%), Gaps = 151/468 (32%)

Query: 18  SNLHCDWKITAVKENRSNVFVICDITPMHTCNQRSVK------LQGETKWIAAKFLHIWK 71
           S    D  I   K+  S    +     + +  +  V+      L+   K++ +      +
Sbjct: 47  SKEEID-HIIMSKDAVSGTLRLFWT--LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR 103

Query: 72  QSEHR------EVDKLRN--EIATTYGI--KCPIWKLE------------AVDKMA---- 105
           Q          + D+L N  ++   Y +    P  KL              +D +     
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK 163

Query: 106 --------R------------FWL---RTDHADGYAQLLQ--YKQEMENVNSR------- 133
                                FWL     +  +   ++LQ    Q   N  SR       
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223

Query: 134 --NIVIIETKSQQQFTADIFDRMFVFLYD-----TAYAFKTRCRMLVIVDGWEIDSPYKS 186
              I  I+ + ++   +  ++   + L +        AF   C++L+        + +K 
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT-------TRFKQ 276

Query: 187 VMLVAVCRDGNDSVLPIAFCEVVEENLDSWAFFLKNLNYGLRLERGEGLCIMGDGDNGID 246
           V          D +       +           L + +  L  +  + L +       +D
Sbjct: 277 VT---------DFLSAATTTHIS----------LDHHSMTLTPDEVKSLLL-----KYLD 312

Query: 247 EAVEEFLPSAVYRQCC------FSLYTKMVHEFPGVTVHSPFWGACRSTNGNSFK--NQM 298
              ++ LP    R+         S+  + + +                 N   +K  N  
Sbjct: 313 CRPQD-LP----REVLTTNPRRLSIIAESIRDGL-----------ATWDN---WKHVNCD 353

Query: 299 AVIETISMECYNWLKDTDCQK--WALYSMPEWVKSTEITISATEQLRIW--LLKQLDLNV 354
            +   I     N L+  + +K    L   P       I +S      IW  ++K   + V
Sbjct: 354 KLTTIIES-SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS-----LIWFDVIKSDVMVV 407

Query: 355 EQRLWQVSGI---PCPHACRCIDTWGDKL-----DTYVHRPMTVDEYR 394
             +L + S +   P          + +       +  +HR + VD Y 
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI-VDHYN 454

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	405
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	95.22
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	95.2
3hot_A	345	Transposable element mariner, complete CDS; protei	90.06
2rpr_A	87	Flywch-type zinc finger-containing protein 1; flyw	86.99

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=95.22  E-value=0.024  Score=40.40  Aligned_cols=41  Identities=15%  Similarity=0.199  Sum_probs=34.9

Q ss_pred             CeEEEEEeecCCCceEEEEEEeCCCCEEEEEeeCCCceecc
Q 036307           10 STCVSCECSNLHCDWKITAVKENRSNVFVICDITPMHTCNQ   50 (405)
Q Consensus        10 ~~r~~~~C~~~~Cpwrv~~~~~~~~~~~~I~~~~~~H~c~~   50 (405)
                      --|-..+|+..+||++-.+.+..++....++++.++|||..
T Consensus        33 ~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~   73 (76)
T 2ayd_A           33 YPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDM   73 (76)
T ss_dssp             SCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCC
T ss_pred             CceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCC
Confidence            35667999999999999999887666677889999999986

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=95.20  E-value=0.029  Score=40.15  Aligned_cols=42  Identities=10%  Similarity=0.097  Sum_probs=35.1

Q ss_pred             CCeEEEEEeecCCCceEEEEEEeCCCCEEEEEeeCCCceecc
Q 036307            9 WSTCVSCECSNLHCDWKITAVKENRSNVFVICDITPMHTCNQ   50 (405)
Q Consensus         9 ~~~r~~~~C~~~~Cpwrv~~~~~~~~~~~~I~~~~~~H~c~~   50 (405)
                      .--|-..+|+..+||++-.+.+..++....++++.++|||..
T Consensus        35 ~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~   76 (78)
T 1wj2_A           35 PYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDL   76 (78)
T ss_dssp             SSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCC
T ss_pred             cCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCC
Confidence            335677999999999999999987666677889999999985

>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*

Probab=90.06  E-value=3.8  Score=37.85  Aligned_cols=59  Identities=17%  Similarity=0.180  Sum_probs=37.9

Q ss_pred             CCCCceeEEEEEEcCCCCeEEEEEEEee---ccccccHHHHHHHHhhccc-c-cC----CCCeEEEcCCcc
Q 036307          182 SPYKSVMLVAVCRDGNDSVLPIAFCEVV---EENLDSWAFFLKNLNYGLR-L-ER----GEGLCIMGDGDN  243 (405)
Q Consensus       182 ~~~~~~ll~~~g~d~~~~~~~~a~a~~~---~E~~~~~~wfl~~l~~~~~-~-~~----~~~~~iisD~~~  243 (405)
                      .++++.+++..+.+..|   .+++.+++   .-+.+.|.-+|+.+...+. . +.    ..+.+++.|...
T Consensus       185 ~~~~~~~~v~~~~~~~g---~~~~~~~~~~~~~~~~~y~~~L~~~~~~~~~~~p~~~~~~~~~~~~~Dna~  252 (345)
T 3hot_A          185 NRFGKKTMLCVWWDQSG---VIYYELLKPGETVNAARYQQQLINLNRALQRKRPEYQKRQHRVIFLHDNAP  252 (345)
T ss_dssp             CTTCCEEEEEEEEESSS---EEEEEEECSSCCCCHHHHHHHHHHHHHHHHHHSTTCC---CCCEEECCCCT
T ss_pred             cCcCCcEEEEEEEcccC---ceeeEecCCCCcccHHHHHHHHHHHHHHHHHhchhhhcCCCceEEEECCCC
Confidence            34566777777778777   56777776   4566777777776544321 0 21    346799999854

>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}

Probab=86.99  E-value=0.59  Score=34.26  Aligned_cols=42  Identities=17%  Similarity=0.251  Sum_probs=29.6

Q ss_pred             EEEEcCCCeEEEEEeec---CCCceEEEEEEeCCCCEEEEEeeCCCceeccc
Q 036307            3 FSLERPWSTCVSCECSN---LHCDWKITAVKENRSNVFVICDITPMHTCNQR   51 (405)
Q Consensus         3 ~~~~rs~~~r~~~~C~~---~~Cpwrv~~~~~~~~~~~~I~~~~~~H~c~~~   51 (405)
                      |...+....+..++|..   .+|++||....  +  .  |. ....|||++.
T Consensus        30 Y~~~~~~~~~~yWrC~~~~~~kCrARi~T~~--~--~--~~-~~~~HnH~p~   74 (87)
T 2rpr_A           30 YRKEKAAGEKVYWMCRDQARLGCRSRAITQG--H--R--IM-VMRSHCHQPD   74 (87)
T ss_dssp             EEEEEECSSCEEEEEGGGTTSCCCCEEEEET--T--E--EE-ECSCCSSCCC
T ss_pred             EEeeecCCCcEEEEecCCCCCCCCEEEEEcC--C--C--EE-CCCCcCCCCc
Confidence            55556666778899997   58999988753  2  2  32 4577999873

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	405
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	96.25

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.25  E-value=0.003  Score=42.55  Aligned_cols=43  Identities=9%  Similarity=0.087  Sum_probs=36.3

Q ss_pred             CCCeEEEEEeecCCCceEEEEEEeCCCCEEEEEeeCCCceecc
Q 036307            8 PWSTCVSCECSNLHCDWKITAVKENRSNVFVICDITPMHTCNQ   50 (405)
Q Consensus         8 s~~~r~~~~C~~~~Cpwrv~~~~~~~~~~~~I~~~~~~H~c~~   50 (405)
                      |...|-.++|+..+|+++=.+.+..+++...++++.++|||+.
T Consensus        27 s~~pRsYYrCt~~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~   69 (71)
T d1wj2a_          27 NPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDL   69 (71)
T ss_dssp             CSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCC
T ss_pred             CCCceEEEEccccCCCCcceEEEEcCCCCEEEEEEeeEeCCCC
Confidence            3446788999999999999999987666677889999999975