Citrus Sinensis ID: 036327

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-----
MAANNSSFKFSLFSHLVLNVLILLLATSTKTANSYAFSIKEATIEGIQLAFRQNQLASRQLVQFYIGEIRRLNPVLNAVIEVNPDALYQADKADYERKVKAPGSLVGLRGIPVLLKDMIGTKDKQNTTAGSFALLGSVVARDAGVVMKLRKAGAIIMGKASLSEWADFRSLQAPNGFSARGGQGKNPYVLSADPCGSSSGPAISVAANLVAVSLGTETDGSILCPSSSNSVVGIKPTVGLTSLAGVIPVSPRQDTIGDICLSLFISDAKVSSSNGSSISVDYNDPATKAASYYIPYGGYKQFLKLYGLKGKRLGIVRNPFFNFDKGSALTQAFNYHLQTLRQQGAVLVDYLEIANIDVILNATASGEATALVAEFKLALNAYVKELVASPVRSLAEVIAFNEKFSDIEKIEEFGQDIFLAAQATNGIGNTEKAALLNLAKLSRDGFEKAMTVNKLDALVTPRSDIAPVLAIGGFPGINVPAGYDTEGVPFGINFGGLRGTEPKLIEIAYGFEQATMIRKPPSFKP
cccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccEEEEEcHHHHHHHHHHHHHHHHHcccccccccccEEEEEEcccccccccccHHHHHHccccccccHHHHHHHHHccccEEccccHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccEEEcccccccccccEEEccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccHHHccccccccccEEEEcccccccccccHHHHHHHHHHHHHHHHcccEEEcccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEccccccccccccccccEEEEccccccccccEEEEEEcccccHHHHHHHHHHHHHHccccccccccc
cccccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccEEEEcccHHHHHHHHHHHHHHHccccccccccccEEEEccccccccccccHHHHHHHccccccccHHHHHHHHcccEEEEEEcccHHHHcccccccccEEcccEEccccccccEccccccHHHHHHHHcccccEEEEEEcccccHHHHHHcccEEEEcccccEccccEccccccccEEEEEEccHHHHHHHHHHHEccccccccccccccccccccccccHHHHHcccccccEEEEEcccccccccccHHHHHHHHHHHHHHHHcccEEEEEcccccccEEEEEEEcHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccccccccccHHHHHEEEHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcHHHHcccccEEEccccccccEEEEEEEEcccccHHHHHHHHHHHHHHHcccccccccc
maannssfkfsLFSHLVLNVLILLLATSTKTANSYAFSIKEATIEGIQLAFRQNQLASRQLVQFYIGEIRRLNPVLNAVIEvnpdalyqadkadyerkvkapgslvglrgipvllkdmigtkdkqnttAGSFALLGSVVARDAGVVMKLRKAGAIIMGKASLSEWAdfrslqapngfsarggqgknpyvlsadpcgsssgpaISVAANLVAVSLgtetdgsilcpsssnsvvgikptvgltslagvipvsprqdtigdICLSLFISdakvsssngssisvdyndpatkaasyyipyggYKQFLKLYglkgkrlgivrnpffnfdkgsaLTQAFNYHLQTLRQQGAVLVDYLEIANIDVILNATASGEATALVAEFKLALNAYVKELVASPVRSLAEVIAFNEKFSDIEKIEEFGQDIFLAAQATNGIGNTEKAALLNLAKLSRDGFEKAMTVNKLdalvtprsdiapvlaiggfpginvpagydtegvpfginfgglrgtepKLIEIAYGFeqatmirkppsfkp
maannssfKFSLFSHLVLNVLILLLATSTKTANSYAFSIKEATIEGIQLAFRQNQLASRQLVQFYIGEIRRLNPVLNAVIEVNPDALYqadkadyerkvkapgslvglrgiPVLLKDMIGTKDKQNTTAGSFALLGSVVARDAGVVMKLRKAGAIIMGKASLSEWADFRSLQAPNGFSARGGQGKNPYVLSADPCGSSSGPAISVAANLVAVSLGTETDGSILCPSSSNSVVGIKPTVGLTSLAGVIPVSPRQDTIGDICLSLFISDAKVSSSNGSSISVDYNDPATKAASYYIPYGGYKQFLKLYGLKGKRLGIVRNPFFNFDKGSALTQAFNYHLQTLRQQGAVLVDYLEIANIDVILNATASGEATALVAEFKLALNAYVKELVASPVRSLAEVIAFNEKFSDIEKIEEFGQDIFLAAQATNGIGNTEKAALLNLAKLSRDGFEKAMTVNKLDALVTPRSDIAPVLAIGGFPGINVPAGYDTEGVPFGINFGGLRGTEPKLIEIAYGfeqatmirkppsfkp
MAANNSSFKFSLFSHlvlnvlilllATSTKTANSYAFSIKEATIEGIQLAFRQNQLASRQLVQFYIGEIRRLNPVLNAVIEVNPDALYQADKADYERKVKAPGSLVGLRGIPVLLKDMIGTKDKQNTTAGSFALLGSVVARDAGVVMKLRKAGAIIMGKASLSEWADFRSLQAPNGFSARGGQGKNPYVLSADPCGSSSGPAISVAANLVAVSLGTETDGSILCPSSSNSVVGIKPTVGLTSLAGVIPVSPRQDTIGDICLSLFISDAKVsssngssisVDYNDPATKAASYYIPYGGYKQFlklyglkgkrlgIVRNPFFNFDKGSALTQAFNYHLQTLRQQGAVLVDYLEIANIDVILNATASGEATALVAEFKLALNAYVKELVASPVRSLAEVIAFNEKFSDIEKIEEFGQDIFLAAQATNGIGNTEKAALLNLAKLSRDGFEKAMTVNKLDALVTPRSDIAPVLAIGGFPGINVPAGYDTEGVPFGINFGGLRGTEPKLIEIAYGFEQATMIRKPPSFKP
*******FKFSLFSHLVLNVLILLLATSTKTANSYAFSIKEATIEGIQLAFRQNQLASRQLVQFYIGEIRRLNPVLNAVIEVNPDALYQADKADYERKVKAPGSLVGLRGIPVLLKDMIGTKDKQNTTAGSFALLGSVVARDAGVVMKLRKAGAIIMGKASLSEWADFRSL******************************AISVAANLVAVSLGTETDGSILCPSSSNSVVGIKPTVGLTSLAGVIPVSPRQDTIGDICLSLFISDAK**********VDYNDPATKAASYYIPYGGYKQFLKLYGLKGKRLGIVRNPFFNFDKGSALTQAFNYHLQTLRQQGAVLVDYLEIANIDVILNATASGEATALVAEFKLALNAYVKELVASPVRSLAEVIAFNEKFSDIEKIEEFGQDIFLAAQATNGIGNTEKAALLNLAKLSRDGFEKAMTVNKLDALVTPRSDIAPVLAIGGFPGINVPAGYDTEGVPFGINFGGLRGTEPKLIEIAYGFEQAT**********
***********LFSHLVLNVLILLLATSTKTANSYAFSIKEATIEGIQLAFRQNQLASRQLVQFYIGEIRRLNPVLNAVIEVNPDALYQADKADYERKVKAPGSLVGLRGIPVLLKDMIGTKDKQNTTAGSFALLGSVVARDAGVVMKLRKAGAIIMGKASLSEWADFRSLQAPNGFSARGGQGKNPYVLSADPCGSSSGPAISVAANLVAVSLGTETDGSILCPSSSNSVVGIKPTVGLTSLAGVIPVSPRQDTIGDICLSLFISDAKVSSSNGSSISVDYNDPATKAASYYIPYGGYKQFLKLYGLKGKRLGIVRNPFFNFDKGSALTQAFNYHLQTLRQQGAVLVDYLEIANIDVILNATASGEATALVAEFKLALNAYVKELVASPVRSLAEVIAFNEKFSDIEKIEEFGQDIFLAAQATNGIGNTEKAALLNLAKLSRDGFEKAMTVNKLDALVTPRSDIAPVLAIGGFPGINVPAGYDTEGVPFGINFGGLRGTEPKLIEIAYGFEQATMIR*PPS***
MAANNSSFKFSLFSHLVLNVLILLLATSTKTANSYAFSIKEATIEGIQLAFRQNQLASRQLVQFYIGEIRRLNPVLNAVIEVNPDALYQADKADYERKVKAPGSLVGLRGIPVLLKDMIGTKDKQNTTAGSFALLGSVVARDAGVVMKLRKAGAIIMGKASLSEWADFRSLQAPNGFSARGGQGKNPYVLSADPCGSSSGPAISVAANLVAVSLGTETDGSILCPSSSNSVVGIKPTVGLTSLAGVIPVSPRQDTIGDICLSLFISDAK********ISVDYNDPATKAASYYIPYGGYKQFLKLYGLKGKRLGIVRNPFFNFDKGSALTQAFNYHLQTLRQQGAVLVDYLEIANIDVILNATASGEATALVAEFKLALNAYVKELVASPVRSLAEVIAFNEKFSDIEKIEEFGQDIFLAAQATNGIGNTEKAALLNLAKLSRDGFEKAMTVNKLDALVTPRSDIAPVLAIGGFPGINVPAGYDTEGVPFGINFGGLRGTEPKLIEIAYGFEQATMIRKPPSFKP
******SFKFSLFSHLVLNVLILLLATSTKTANSYAFSIKEATIEGIQLAFRQNQLASRQLVQFYIGEIRRLNPVLNAVIEVNPDALYQADKADYERKVKAPGSLVGLRGIPVLLKDMIGTKDKQNTTAGSFALLGSVVARDAGVVMKLRKAGAIIMGKASLSEWADFRSLQAPNGFSARGGQGKNPYVLSADPCGSS********ANLVAVSLGTETDGSILCPSSSNSVVGIKPTVGLTSLAGVIPVSPRQDTIGDICLSLFISDAKVSSSNGSSISVDYNDPATKAASYYIPYGGYKQFLKLYGLKGKRLGIVRNPFFNFDKGSALTQAFNYHLQTLRQQGAVLVDYLEIANIDVILNATASGEATALVAEFKLALNAYVKELVASPVRSLAEVIAFNEKFSDIEKIEEFGQDIFLAAQATNGIGNTEKAALLNLAKLSRDGFEKAMTVNKLDALVTPRSDIAPVLAIGGFPGINVPAGYDTEGVPFGINFGGLRGTEPKLIEIAYGFEQATMIRKP*****
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAANNSSFKFSLFSHLVLNVLILLLATSTKTANSYAFSIKEATIEGIQLAFRQNQLASRQLVQFYIGEIRRLNPVLNAVIEVNPDALYQADKADYERKVKAPGSLVGLRGIPVLLKDMIGTKDKQNTTAGSFALLGSVVARDAGVVMKLRKAGAIIMGKASLSEWADFRSLQAPNGFSARGGQGKNPYVLSADPCGSSSGPAISVAANLVAVSLGTETDGSILCPSSSNSVVGIKPTVGLTSLAGVIPVSPRQDTIGDICLSLFISDAKVSSSNGSSISVDYNDPATKAASYYIPYGGYKQFLKLYGLKGKRLGIVRNPFFNFDKGSALTQAFNYHLQTLRQQGAVLVDYLEIANIDVILNATASGEATALVAEFKLALNAYVKELVASPVRSLAEVIAFNEKFSDIEKIEEFGQDIFLAAQATNGIGNTEKAALLNLAKLSRDGFEKAMTVNKLDALVTPRSDIAPVLAIGGFPGINVPAGYDTEGVPFGINFGGLRGTEPKLIEIAYGFEQATMIRKPPSFKP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query525 2.2.26 [Sep-21-2011]
Q9URY4583 Putative amidase C869.01 yes no 0.910 0.819 0.364 3e-67
B0K3S3488 Glutamyl-tRNA(Gln) amidot yes no 0.847 0.911 0.282 1e-29
B0KBN4488 Glutamyl-tRNA(Gln) amidot yes no 0.843 0.907 0.285 4e-29
Q97FQ7485 Glutamyl-tRNA(Gln) amidot yes no 0.826 0.894 0.280 1e-28
A6TTJ8491 Glutamyl-tRNA(Gln) amidot yes no 0.847 0.906 0.288 2e-28
B0JSX3483 Glutamyl-tRNA(Gln) amidot yes no 0.784 0.853 0.283 6e-26
Q97EX8478 Glutamyl-tRNA(Gln) amidot no no 0.841 0.924 0.279 9e-26
A5FQ07486 Glutamyl-tRNA(Gln) amidot yes no 0.853 0.921 0.270 4e-25
Q3ZYM5486 Glutamyl-tRNA(Gln) amidot yes no 0.853 0.921 0.266 6e-25
B1GZD3485 Glutamyl-tRNA(Gln) amidot yes no 0.832 0.901 0.267 1e-24
>sp|Q9URY4|YI01_SCHPO Putative amidase C869.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC869.01 PE=3 SV=1 Back     alignment and function desciption
 Score =  256 bits (654), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 188/516 (36%), Positives = 276/516 (53%), Gaps = 38/516 (7%)

Query: 38  SIKEATIEGIQLAFRQNQLASRQLVQFYIGEIRRLNPVLNAVIEVNPDALYQADKADYER 97
           ++++ATI+ +Q       L S  +V  Y+    ++NP +N ++++NPD L  A + D ER
Sbjct: 65  TLEDATIDQLQNYMENGILTSTDIVHCYLDRYLQVNPYVNGILQLNPDVLTIASELDDER 124

Query: 98  KVKAPGSLVG-LRGIPVLLKDMIGTKDKQNTTAGSFALLGSVVARDAGVVMKLRKAGAII 156
              A G + G L GIP ++KD   TKDK +TTAGS+ALLGS+V RDA VV +LR+AGA++
Sbjct: 125 ---ANGIIRGPLHGIPFIVKDNFATKDKMDTTAGSYALLGSIVPRDAYVVKQLREAGAVL 181

Query: 157 MGKASLSEWADFRSLQAPNGFSARGGQGKNPYVLSADPCGSSSGPAISVAANLVAVSLGT 216
            G A+LSEWAD RS     G+SARGGQ + P+ L+ +P GSSSG AISVA+N++A +LGT
Sbjct: 182 FGHATLSEWADMRSNDYSEGYSARGGQSRCPFNLTVNPGGSSSGSAISVASNMIAFALGT 241

Query: 217 ETDGSILCPSSSNSVVGIKPTVGLTSLAGVIPVSPRQDTIGDICLSLFISDAKVSSSNGS 276
           ETDGSI+ P+  N VVG+KPTVGLTS  GVIP S  QDT G I  +  + DA       S
Sbjct: 242 ETDGSIIDPAMRNGVVGLKPTVGLTSRYGVIPESEHQDTTGPIART--VRDAVYVFQ--S 297

Query: 277 SISVDYNDPATKAASYYIPY-GGYKQFL-KLYGLKGKRLGIVRNPFFNFDKGSALTQAFN 334
              +D ND  T   +   P  G Y +FL     L+G R G+     +   K   + +   
Sbjct: 298 MWGIDENDIYTLNQTGKTPEDGDYMKFLSNKTSLEGARFGLPWKRLWQNAKADEIDRLLE 357

Query: 335 YHLQTLRQQGAVLVDYLEIANIDVILN--------ATASGEATALVAEFKLALNAYVKEL 386
             ++ + + GA++ +     N+DVI N        +    E T +  +F   + +Y+ E+
Sbjct: 358 V-VKQIEEAGAIVYNNTNFYNLDVISNDGWNWELGSVNESEYTVVKVDFYNNIKSYLSEV 416

Query: 387 VASPVRSLAEVIAFNEKFSDIEK-----IEEF--GQDIFLAAQATNGIGN-TEKAALLNL 438
             + + SL +++ +N K+   E      +  F  GQD FLA+    G+ N T   A+  +
Sbjct: 417 KNTEIHSLEDIVEYNNKYMGTEGGKPNIVPAFSSGQDGFLASLEWGGVKNETYWQAVEYV 476

Query: 439 AKLSRD-GFEKAMTVNK--------LDALVTPR--SDIAPVLAIGGFPGINVPAGYDTEG 487
            + S+D G + A+            L+ L+ P   S      A  G+P I +P G  T G
Sbjct: 477 RRTSQDEGIDYALNYTDPKTNDSFILNGLLVPSGTSITYQQAAKAGYPMITLPIGVKTNG 536

Query: 488 VPFGINFGGLRGTEPKLIEIAYGFEQATMIRKPPSF 523
            PFG+        EP+LI+     E     +  P F
Sbjct: 537 RPFGLGIMHSAWQEPQLIKYGSAIEDLLQYKAKPKF 572

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 4
>sp|B0K3S3|GATA_THEPX Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thermoanaerobacter sp. (strain X514) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|B0KBN4|GATA_THEP3 Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|Q97FQ7|GATA1_CLOAB Glutamyl-tRNA(Gln) amidotransferase subunit A 1 OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=gatA1 PE=3 SV=1 Back     alignment and function description
>sp|A6TTJ8|GATA_ALKMQ Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Alkaliphilus metalliredigens (strain QYMF) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|B0JSX3|GATA_MICAN Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Microcystis aeruginosa (strain NIES-843) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|Q97EX8|GATA2_CLOAB Glutamyl-tRNA(Gln) amidotransferase subunit A 2 OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=gatA2 PE=3 SV=1 Back     alignment and function description
>sp|A5FQ07|GATA_DEHSB Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Dehalococcoides sp. (strain BAV1) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|Q3ZYM5|GATA_DEHSC Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Dehalococcoides sp. (strain CBDB1) GN=gatA PE=3 SV=1 Back     alignment and function description
>sp|B1GZD3|GATA_UNCTG Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Uncultured termite group 1 bacterium phylotype Rs-D17 GN=gatA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query525
255574730510 amidase, putative [Ricinus communis] gi| 0.956 0.984 0.744 0.0
224078151510 predicted protein [Populus trichocarpa] 0.927 0.954 0.758 0.0
359474857514 PREDICTED: putative amidase C869.01-like 0.939 0.959 0.765 0.0
147861793514 hypothetical protein VITISV_016638 [Viti 0.939 0.959 0.765 0.0
224105219522 predicted protein [Populus trichocarpa] 0.927 0.932 0.728 0.0
224078139516 predicted protein [Populus trichocarpa] 0.956 0.972 0.703 0.0
449510428518 PREDICTED: putative amidase C869.01-like 0.984 0.998 0.703 0.0
359475039509 PREDICTED: putative amidase C869.01-like 0.918 0.946 0.714 0.0
359474863506 PREDICTED: LOW QUALITY PROTEIN: putative 0.910 0.944 0.711 0.0
225427948515 PREDICTED: putative amidase C869.01-like 0.918 0.935 0.702 0.0
>gi|255574730|ref|XP_002528273.1| amidase, putative [Ricinus communis] gi|223532310|gb|EEF34111.1| amidase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  778 bits (2010), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/524 (74%), Positives = 441/524 (84%), Gaps = 22/524 (4%)

Query: 5   NSSFKFSLFSHLVLNVLILLLATSTKTANSYAFSIKEATIEGIQLAFRQNQLASRQLVQF 64
           N     SLFS L+L +L +          S+AFSI+EATI  +QLAF+QNQL SR+LVQF
Sbjct: 4   NKRLNLSLFSSLILTLLAI---------TSHAFSIREATINDLQLAFKQNQLTSRKLVQF 54

Query: 65  YIGEIRRLNPVLNAVIEVNPDALYQADKADYERKVKAPGSLVGLRGIPVLLKDMIGTKDK 124
           Y+GEIRRLN VLN +IE+NPDALYQADKADYER V APGSLVGL GIPVLLKD IGTKD+
Sbjct: 55  YVGEIRRLNSVLNGLIEINPDALYQADKADYERSVNAPGSLVGLHGIPVLLKDNIGTKDR 114

Query: 125 QNTTAGSFALLGSVVARDAGVVMKLRKAGAIIMGKASLSEWADFRSLQAPNGFSARGGQG 184
            NTTAGSF L  SVV RDAGVVMKLRK GAII+GKAS++EWA FRSL+ PNGFSARGGQG
Sbjct: 115 LNTTAGSFGLFRSVVRRDAGVVMKLRKTGAIILGKASMTEWAAFRSLKLPNGFSARGGQG 174

Query: 185 KNPYVLSADPCGSSSGPAISVAANLVAVSLGTETDGSILCPSSSNSVVGIKPTVGLTSLA 244
           KNPYVLSADPCGSSSGPAISVAANLVAVS+GTETDGSILCPS++NSVVGIKPTVGLTS A
Sbjct: 175 KNPYVLSADPCGSSSGPAISVAANLVAVSVGTETDGSILCPSNANSVVGIKPTVGLTSRA 234

Query: 245 GVIPVSPRQDTIGDICLS----LFISDAKVSSSNGSSISVDYNDPATKAASYYIPYGGYK 300
           GV+PVS RQDT+G IC +    +++ DA V          DYND ATK AS +IPYGGYK
Sbjct: 235 GVVPVSFRQDTVGPICRTVSDAVYVLDAIVGE--------DYNDGATKEASQHIPYGGYK 286

Query: 301 QFLKLYGLKGKRLGIVRNPFFNFDKGSALTQAFNYHLQTLRQQGAVLVDYLEIANIDVIL 360
           QFLK YGLKGKRLG+VRNPF +F   +A +Q F YHLQTLRQ GA++VD+LEIANI+ IL
Sbjct: 287 QFLKPYGLKGKRLGVVRNPFLSF-ASNAESQTFEYHLQTLRQGGAIIVDHLEIANINTIL 345

Query: 361 NATASGEATALVAEFKLALNAYVKELVASPVRSLAEVIAFNEKFSDIEKIEEFGQDIFLA 420
           N  ASGEATAL+AEFK++LNAY++ LVAS VRSLAEVI FN++F+D+EKIEEFGQDIFLA
Sbjct: 346 NPNASGEATALLAEFKISLNAYLETLVASQVRSLAEVIKFNQEFADVEKIEEFGQDIFLA 405

Query: 421 AQATNGIGNTEKAALLNLAKLSRDGFEKAMTVNKLDALVTPRSDIAPVLAIGGFPGINVP 480
           AQATNGIG  E+AALLNLAKL+RDGF+K M  NKLDALVTP + +APVLAIGGFPGINVP
Sbjct: 406 AQATNGIGKAERAALLNLAKLTRDGFQKLMWDNKLDALVTPGAGVAPVLAIGGFPGINVP 465

Query: 481 AGYDTEGVPFGINFGGLRGTEPKLIEIAYGFEQATMIRKPPSFK 524
           AGYD  GVPFGINFGGL+GTEPKLI+IAYGFEQAT IRKPP+FK
Sbjct: 466 AGYDYAGVPFGINFGGLKGTEPKLIQIAYGFEQATKIRKPPTFK 509

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224078151|ref|XP_002305495.1| predicted protein [Populus trichocarpa] gi|222848459|gb|EEE86006.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359474857|ref|XP_002277463.2| PREDICTED: putative amidase C869.01-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147861793|emb|CAN80909.1| hypothetical protein VITISV_016638 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224105219|ref|XP_002313731.1| predicted protein [Populus trichocarpa] gi|222850139|gb|EEE87686.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224078139|ref|XP_002305493.1| predicted protein [Populus trichocarpa] gi|222848457|gb|EEE86004.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449510428|ref|XP_004163661.1| PREDICTED: putative amidase C869.01-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359475039|ref|XP_003631572.1| PREDICTED: putative amidase C869.01-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359474863|ref|XP_003631544.1| PREDICTED: LOW QUALITY PROTEIN: putative amidase C869.01-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|225427948|ref|XP_002276506.1| PREDICTED: putative amidase C869.01-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query525
TAIR|locus:2116890466 AT4G34880 "AT4G34880" [Arabido 0.539 0.607 0.565 9.7e-80
UNIPROTKB|Q81RH4491 BAS1925 "Amidase family protei 0.889 0.951 0.377 7e-70
TIGR_CMR|BA_2072491 BA_2072 "amidase family protei 0.889 0.951 0.377 7e-70
UNIPROTKB|G4MQU3555 MGG_04756 "Glutamyl-tRNA(Gln) 0.900 0.852 0.367 8.8e-63
UNIPROTKB|G4MP85559 MGG_02188 "Glutamyl-tRNA(Gln) 0.430 0.404 0.470 1.4e-62
POMBASE|SPAC869.01583 SPAC869.01 "amidase (predicted 0.853 0.768 0.358 2.7e-61
UNIPROTKB|Q0C2V5506 HNE_1220 "Amidase family prote 0.403 0.418 0.461 9.9e-60
UNIPROTKB|Q81RW6536 BAS1782 "Amidase family protei 0.428 0.419 0.371 1.1e-58
TIGR_CMR|BA_1921536 BA_1921 "amidase family protei 0.428 0.419 0.371 1.1e-58
UNIPROTKB|Q2KG62566 MGCH7_ch7g473 "Putative unchar 0.88 0.816 0.277 1.5e-33
TAIR|locus:2116890 AT4G34880 "AT4G34880" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 801 (287.0 bits), Expect = 9.7e-80, P = 9.7e-80
 Identities = 168/297 (56%), Positives = 219/297 (73%)

Query:   227 SSNSVVGIKPTVGLTSLAGVIPVSPRQDTIGDICLSLFISDAKVXXXXXXXXXVDYNDPA 286
             S NSVVGIKP+VGLTS AGV+P+S RQD+IG IC +  +SDA            D  D A
Sbjct:   182 SQNSVVGIKPSVGLTSRAGVVPISLRQDSIGPICRT--VSDA--VHLLDAIVGYDPLDEA 237

Query:   287 TKAASYYIPYGGYKQFXXXXXXXXXXXXIVRNPFFNFDKGSALTQAFNYHLQTLRQQGAV 346
             TK AS +IP GGYKQF            IV        K S+L    ++H++TLR++GA+
Sbjct:   238 TKTASEFIPEGGYKQFLTTSGLKGKRLGIVM-------KHSSL---LDHHIKTLRREGAI 287

Query:   347 LVDYLEIANIDVILNATASGEATALVAEFKLALNAYVKELVASPVRSLAEVIAFNEKFSD 406
             +++ L I NI+VI+  T SGE  AL+AEFK++LNAY+KELV SPVRSLA+VIA+NE+F++
Sbjct:   288 VINNLTIPNIEVIVGGTDSGEEIALLAEFKMSLNAYLKELVKSPVRSLADVIAYNEEFAE 347

Query:   407 IEKIEEFGQDIFLAAQATNGIGNTEKAALLNLAKLSRDGFEKAMTVNKLDALVTPRSDIA 466
              EK++E+GQ++FL A+AT+G+G  EK AL  + +LSR+G EK +  NKLDA+VT  SD++
Sbjct:   348 QEKVKEWGQEVFLTAEATSGMGEKEKTALQKMKELSRNGIEKLIEENKLDAIVTLGSDLS 407

Query:   467 PVLAIGGFPGINVPAGYDTEGVPFGINFGGLRGTEPKLIEIAYGFEQATMIRKPPSF 523
              VLAIGG+PGINVPAGYD+ GVP+GI+FGGLR +EPKLIEIA+ FEQAT+IRKPP F
Sbjct:   408 SVLAIGGYPGINVPAGYDSGGVPYGISFGGLRFSEPKLIEIAFAFEQATLIRKPPKF 464
GO:0004040 "amidase activity" evidence=ISS
GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" evidence=IEA
UNIPROTKB|Q81RH4 BAS1925 "Amidase family protein" [Bacillus anthracis (taxid:1392)] Back     alignment and assigned GO terms
TIGR_CMR|BA_2072 BA_2072 "amidase family protein" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|G4MQU3 MGG_04756 "Glutamyl-tRNA(Gln) amidotransferase subunit A" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
UNIPROTKB|G4MP85 MGG_02188 "Glutamyl-tRNA(Gln) amidotransferase subunit A" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
POMBASE|SPAC869.01 SPAC869.01 "amidase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|Q0C2V5 HNE_1220 "Amidase family protein" [Hyphomonas neptunium ATCC 15444 (taxid:228405)] Back     alignment and assigned GO terms
UNIPROTKB|Q81RW6 BAS1782 "Amidase family protein" [Bacillus anthracis (taxid:1392)] Back     alignment and assigned GO terms
TIGR_CMR|BA_1921 BA_1921 "amidase family protein" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|Q2KG62 MGCH7_ch7g473 "Putative uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9URY4YI01_SCHPO3, ., 5, ., 1, ., 40.36430.91040.8198yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00041316
hypothetical protein (510 aa)
(Populus trichocarpa)
Predicted Functional Partners:
fgenesh4_pg.C_LG_VIII001519
glutamyl-tRNA(Gln) amidotransferase (EC-6.3.5.7) (506 aa)
• •   • 0.525
estExt_fgenesh4_pm.C_LG_X0145
glutamyl-tRNA(Gln) amidotransferase (529 aa)
• •   • 0.415

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query525
PRK08137497 PRK08137, PRK08137, amidase; Provisional 1e-131
PRK06828491 PRK06828, PRK06828, amidase; Provisional 1e-127
PRK06707536 PRK06707, PRK06707, amidase; Provisional 3e-92
COG0154475 COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransf 9e-70
PRK11910615 PRK11910, PRK11910, amidase; Provisional 4e-65
pfam01425431 pfam01425, Amidase, Amidase 5e-62
PRK07488472 PRK07488, PRK07488, indole acetimide hydrolase; Va 7e-47
TIGR00132460 TIGR00132, gatA, aspartyl/glutamyl-tRNA(Asn/Gln) a 4e-45
PRK00012459 PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransf 2e-39
PRK07056454 PRK07056, PRK07056, amidase; Provisional 3e-29
PRK09201465 PRK09201, PRK09201, amidase; Provisional 1e-24
PRK07487469 PRK07487, PRK07487, amidase; Provisional 3e-24
PRK06170490 PRK06170, PRK06170, amidase; Provisional 1e-23
PRK05962424 PRK05962, PRK05962, amidase; Validated 3e-23
TIGR02713 561 TIGR02713, allophanate_hyd, allophanate hydrolase 8e-23
PRK06102452 PRK06102, PRK06102, hypothetical protein; Provisio 1e-22
TIGR02715452 TIGR02715, amido_AtzE, amidohydrolase, AtzE family 2e-22
PRK07486484 PRK07486, PRK07486, amidase; Provisional 9e-22
PRK12470462 PRK12470, PRK12470, amidase; Provisional 4e-21
PRK08186 600 PRK08186, PRK08186, allophanate hydrolase; Provisi 4e-21
PRK06565566 PRK06565, PRK06565, amidase; Validated 1e-19
PRK06061483 PRK06061, PRK06061, amidase; Provisional 3e-18
PRK06529482 PRK06529, PRK06529, amidase; Provisional 3e-17
PRK06169466 PRK06169, PRK06169, putative amidase; Provisional 3e-17
PRK07042464 PRK07042, PRK07042, amidase; Provisional 8e-17
PRK07869468 PRK07869, PRK07869, amidase; Provisional 2e-16
PRK08310395 PRK08310, PRK08310, amidase; Provisional 3e-16
PLN02722422 PLN02722, PLN02722, indole-3-acetamide amidohydrol 6e-16
PRK07235502 PRK07235, PRK07235, amidase; Provisional 8e-13
PRK07139439 PRK07139, PRK07139, amidase; Provisional 6e-09
PRK07869468 PRK07869, PRK07869, amidase; Provisional 8e-05
PRK00012459 PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransf 4e-04
PRK07486484 PRK07486, PRK07486, amidase; Provisional 7e-04
PRK06061483 PRK06061, PRK06061, amidase; Provisional 0.001
>gnl|CDD|236161 PRK08137, PRK08137, amidase; Provisional Back     alignment and domain information 
 Score =  390 bits (1003), Expect = e-131
 Identities = 204/513 (39%), Positives = 281/513 (54%), Gaps = 44/513 (8%)

Query: 37  FSIKEATIEGIQLAFRQNQLASRQLVQFY---IGEIRRLNPVLNAVIEVNPDALYQADKA 93
            +  E     +Q A       + QL + Y   I  I R  P LNAVIE+NPDA   A   
Sbjct: 1   QTALEERAGALQAAMPAGAAPASQLTRAYLQRIARIDRDGPRLNAVIELNPDAEADAAAL 60

Query: 94  DYERKVKAPGSLVGLRGIPVLLKDMIGTKDKQNTTAGSFALLGSVVARDAGVVMKLRKAG 153
           D ERK         L GIPVLLKD I   D   TTAGS AL G+   RDA +V +LR AG
Sbjct: 61  DAERKAGKVRGP--LHGIPVLLKDNIDAADPMPTTAGSLALAGNRPTRDAFLVARLRDAG 118

Query: 154 AIIMGKASLSEWADFRSLQAPNGFSARGGQGKNPYVLSADPCGSSSGPAISVAANLVAVS 213
           A+I+GKA+LSEWA+FRS ++ +G+SARGG  +NPY L   PCGSSSG   +VAA L AV+
Sbjct: 119 AVILGKANLSEWANFRSTRSSSGWSARGGLTRNPYALDRSPCGSSSGSGAAVAAGLAAVA 178

Query: 214 LGTETDGSILCPSSSNSVVGIKPTVGLTSLAGVIPVSPRQDTIGDICLSLFISDAKVSSS 273
           +GTETDGSI CP++ N +VG+KPTVGL S  G++P+S  QDT G +  ++  + A +++ 
Sbjct: 179 IGTETDGSITCPAAINGLVGLKPTVGLVSRDGIVPISHSQDTAGPMTRTVADAAAVLTAI 238

Query: 274 NGSSISVDYNDPATKAASYYIPYGGYKQFLKLYGLKGKRLGIVRNPFFNFDKGSALTQAF 333
            G     D  DPAT +A    P   Y   L    L+G RLG+ RN          +   F
Sbjct: 239 AGG----DPADPATASAP--APAVDYVAALDADALRGARLGVARNYLGYHP---EVDAQF 289

Query: 334 NYHLQTLRQQGAVLVDYLEIANIDVILNATASGEATALVAEFKLALNAYV-KELVASPVR 392
              L  L+  GAV++D +++ + D         E   L+ EFK  LNAY+      +PVR
Sbjct: 290 ERALAELKAAGAVVIDVVDLDDGDW-----GEAEKVVLLHEFKAGLNAYLRSTAPHAPVR 344

Query: 393 SLAEVIAFNEKFSDIEKIEEFGQDIFLAAQATNGIGNTEKAALLNLAKLSR----DGFEK 448
           +LA++IAFN      E +  FGQ++F  AQA  G+   + A L  LA   R    +G + 
Sbjct: 345 TLADLIAFNRAQHARE-MPYFGQELFEQAQAAPGL--DDPAYLDALADAKRLAGPEGIDA 401

Query: 449 AMTVNKLDALVTPRSDIAPVL----------------AIGGFPGINVPAGYDTEGVPFGI 492
           A+  ++LDALV P +  A ++                A+ G+P + VP G   +G+P G+
Sbjct: 402 ALKEHRLDALVAPTTGPAWLIDLINGDSFGGSSSTPAAVAGYPHLTVPMGQ-VQGLPVGL 460

Query: 493 NFGGLRGTEPKLIEIAYGFEQATMIRKPPSFKP 525
           +F G   +E +L+E+ Y +EQAT  R+ P F  
Sbjct: 461 SFIGAAWSEARLLELGYAYEQATHARREPRFVE 493

Length = 497
>gnl|CDD|180715 PRK06828, PRK06828, amidase; Provisional Back     alignment and domain information
>gnl|CDD|235855 PRK06707, PRK06707, amidase; Provisional Back     alignment and domain information
>gnl|CDD|223232 COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|183377 PRK11910, PRK11910, amidase; Provisional Back     alignment and domain information
>gnl|CDD|216494 pfam01425, Amidase, Amidase Back     alignment and domain information
>gnl|CDD|236030 PRK07488, PRK07488, indole acetimide hydrolase; Validated Back     alignment and domain information
>gnl|CDD|232842 TIGR00132, gatA, aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit Back     alignment and domain information
>gnl|CDD|234572 PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed Back     alignment and domain information
>gnl|CDD|235921 PRK07056, PRK07056, amidase; Provisional Back     alignment and domain information
>gnl|CDD|236409 PRK09201, PRK09201, amidase; Provisional Back     alignment and domain information
>gnl|CDD|236029 PRK07487, PRK07487, amidase; Provisional Back     alignment and domain information
>gnl|CDD|235723 PRK06170, PRK06170, amidase; Provisional Back     alignment and domain information
>gnl|CDD|168315 PRK05962, PRK05962, amidase; Validated Back     alignment and domain information
>gnl|CDD|233981 TIGR02713, allophanate_hyd, allophanate hydrolase Back     alignment and domain information
>gnl|CDD|235698 PRK06102, PRK06102, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|233982 TIGR02715, amido_AtzE, amidohydrolase, AtzE family Back     alignment and domain information
>gnl|CDD|236028 PRK07486, PRK07486, amidase; Provisional Back     alignment and domain information
>gnl|CDD|171524 PRK12470, PRK12470, amidase; Provisional Back     alignment and domain information
>gnl|CDD|236177 PRK08186, PRK08186, allophanate hydrolase; Provisional Back     alignment and domain information
>gnl|CDD|180626 PRK06565, PRK06565, amidase; Validated Back     alignment and domain information
>gnl|CDD|235686 PRK06061, PRK06061, amidase; Provisional Back     alignment and domain information
>gnl|CDD|180608 PRK06529, PRK06529, amidase; Provisional Back     alignment and domain information
>gnl|CDD|180437 PRK06169, PRK06169, putative amidase; Provisional Back     alignment and domain information
>gnl|CDD|235915 PRK07042, PRK07042, amidase; Provisional Back     alignment and domain information
>gnl|CDD|181154 PRK07869, PRK07869, amidase; Provisional Back     alignment and domain information
>gnl|CDD|181375 PRK08310, PRK08310, amidase; Provisional Back     alignment and domain information
>gnl|CDD|166363 PLN02722, PLN02722, indole-3-acetamide amidohydrolase Back     alignment and domain information
>gnl|CDD|235979 PRK07235, PRK07235, amidase; Provisional Back     alignment and domain information
>gnl|CDD|235945 PRK07139, PRK07139, amidase; Provisional Back     alignment and domain information
>gnl|CDD|181154 PRK07869, PRK07869, amidase; Provisional Back     alignment and domain information
>gnl|CDD|234572 PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed Back     alignment and domain information
>gnl|CDD|236028 PRK07486, PRK07486, amidase; Provisional Back     alignment and domain information
>gnl|CDD|235686 PRK06061, PRK06061, amidase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 525
PRK08137497 amidase; Provisional 100.0
PRK11910615 amidase; Provisional 100.0
COG0154475 GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A su 100.0
PRK06828491 amidase; Provisional 100.0
PRK06707536 amidase; Provisional 100.0
PRK07042464 amidase; Provisional 100.0
PRK06169466 putative amidase; Provisional 100.0
PRK07486484 amidase; Provisional 100.0
PRK06170490 amidase; Provisional 100.0
PRK07488472 indole acetimide hydrolase; Validated 100.0
PRK07487469 amidase; Provisional 100.0
PRK09201465 amidase; Provisional 100.0
PRK06565566 amidase; Validated 100.0
PRK00012459 gatA aspartyl/glutamyl-tRNA amidotransferase subun 100.0
TIGR00132460 gatA glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) 100.0
TIGR02715452 amido_AtzE amidohydrolase, AtzE family. Members of 100.0
PRK06102452 hypothetical protein; Provisional 100.0
PRK07056454 amidase; Provisional 100.0
PRK12470462 amidase; Provisional 100.0
PRK06061483 amidase; Provisional 100.0
PRK08186 600 allophanate hydrolase; Provisional 100.0
PRK07869468 amidase; Provisional 100.0
PRK06529482 amidase; Provisional 100.0
PRK07235502 amidase; Provisional 100.0
PRK05962424 amidase; Validated 100.0
PF01425441 Amidase: Amidase; InterPro: IPR000120 Amidase sign 100.0
TIGR02713 561 allophanate_hyd allophanate hydrolase. Allophanate 100.0
PRK07139439 amidase; Provisional 100.0
PRK08310395 amidase; Provisional 100.0
PLN02722422 indole-3-acetamide amidohydrolase 100.0
KOG1211506 consensus Amidases [Translation, ribosomal structu 100.0
KOG1212560 consensus Amidases [Translation, ribosomal structu 100.0
>PRK08137 amidase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.1e-100  Score=821.84  Aligned_cols=469  Identities=42%  Similarity=0.652  Sum_probs=380.2

Q ss_pred             eeeccchhhhhhHhhhhhhhhhhhHHhhhhhhhhc---cccceeeeEeCcchhccccchhhhhcccCCCceecccCchhh
Q 036327           38 SIKEATIEGIQLAFRQNQLASRQLVQFYIGEIRRL---NPVLNAVIEVNPDALYQADKADYERKVKAPGSLVGLRGIPVL  114 (525)
Q Consensus        38 ~~~~~s~~~l~~~~~~g~~s~~ev~~~~l~ri~~~---~~~lna~~~~~~~al~~A~~~d~~~~~~~g~~~gpL~GvPi~  114 (525)
                      ++..+|+.+|+++|++|++||+||+++||+||+++   |+.+|||++++++|+++|+++|+++  ++|+.+||||||||+
T Consensus         2 ~~~~~~~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~~~~lna~~~~~~~al~~A~~~d~~~--~~g~~~gpL~GvPi~   79 (497)
T PRK08137          2 TALEERAGALQAAMPAGAAPASQLTRAYLQRIARIDRDGPRLNAVIELNPDAEADAAALDAER--KAGKVRGPLHGIPVL   79 (497)
T ss_pred             chhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCceeEEEEeCHHHHHHHHHHHHHH--hcCCCCCCcCCceee
Confidence            56778999999999999999999999999999987   6789999999888999999999988  788888999999999


Q ss_pred             hhhhhccc-ccCCCCcccceeeccccccccceeeeeeccceeEeeccccccccccccccCCCCcccCCCCCCCceeeecC
Q 036327          115 LKDMIGTK-DKQNTTAGSFALLGSVVARDAGVVMKLRKAGAIIMGKASLSEWADFRSLQAPNGFSARGGQGKNPYVLSAD  193 (525)
Q Consensus       115 vKD~~~~~-gg~~tt~Gs~~~~~~~~~~da~~V~~Lr~aGaIi~GKTn~~E~~~~~~~~~~~~~n~~~G~t~NP~~~~~~  193 (525)
                      |||||+++ | ++||+||..++++++.+||++|+|||+||||++||||||||+++.++.+.+++|++||+|+||||++|+
T Consensus        80 vKD~~~v~~G-~~tt~Gs~~~~~~~~~~DA~vV~rLr~AGAii~GKTn~~Efa~~~~~~~~~g~n~~~G~t~NP~~~~~~  158 (497)
T PRK08137         80 LKDNIDAADP-MPTTAGSLALAGNRPTRDAFLVARLRDAGAVILGKANLSEWANFRSTRSSSGWSARGGLTRNPYALDRS  158 (497)
T ss_pred             eecceeecCC-CCcCcCcHhhcCCCCCcCcHHHHHHHHCCCEEEeecChHHhhccCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence            99999999 8 999999999999999999999999999999999999999999755434567899999999999999999


Q ss_pred             CCCCCCCCceeeeeeeeeeeecccCCCeeeccCCCCceeeecccccccccccceecCCCCccccceeeeeeeccceeccC
Q 036327          194 PCGSSSGPAISVAANLVAVSLGTETDGSILCPSSSNSVVGIKPTVGLTSLAGVIPVSPRQDTIGDICLSLFISDAKVSSS  273 (525)
Q Consensus       194 ~GGSSgGsaaaVAag~~p~alGtDtgGSiRiPAa~~Gv~GlKPT~G~v~~~G~~~~~~~~d~~GpmaRsV~~~D~a~~l~  273 (525)
                      |||||||||||||+|++|+|+||||||||||||+||||||||||+||||+.|++|+++++|++|||||||  +|+++++ 
T Consensus       159 ~GGSSgGsAaAVAaG~~~~aiGtDtgGSiRiPAa~cGv~GlKPT~Grvs~~G~~~~~~s~d~~Gp~arsv--~D~a~~l-  235 (497)
T PRK08137        159 PCGSSSGSGAAVAAGLAAVAIGTETDGSITCPAAINGLVGLKPTVGLVSRDGIVPISHSQDTAGPMTRTV--ADAAAVL-  235 (497)
T ss_pred             CCcCccHHHHHHHcCCCceeeecCCCCccccchhhcCeeeecCCCCceeCCCCCCcccccCcccCeeCCH--HHHHHHH-
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999  9999999 


Q ss_pred             CCceeeeecCCcccccceeeeecchHHHHHHHhccCCceeeeeeCCccccCCcchhHHHHHHHHHHHhhccceeeeeeee
Q 036327          274 NGSSISVDYNDPATKAASYYIPYGGYKQFLKLYGLKGKRLGIVRNPFFNFDKGSALTQAFNYHLQTLRQQGAVLVDYLEI  353 (525)
Q Consensus       274 ~~vl~g~d~~d~~~~~~~~~~p~~~~~~~~~~~~~~~lrIGv~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~Vve~~~~  353 (525)
                       ++|.|+|+.|+.+...+.  ...+|...+....++++||||+.+++   .++++++++++++++.|+++||+|++ +++
T Consensus       236 -~vl~g~d~~d~~~~~~~~--~~~~~~~~~~~~~~~~lrIgv~~~~~---~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~  308 (497)
T PRK08137        236 -TAIAGGDPADPATASAPA--PAVDYVAALDADALRGARLGVARNYL---GYHPEVDAQFERALAELKAAGAVVID-VVD  308 (497)
T ss_pred             -HHHhCCCCCCcccccCCC--CccchhhhccccccCCCEEEEEchhc---cCCHHHHHHHHHHHHHHHHCCCEEEe-ccC
Confidence             999999999866543210  11234333322246889999997643   37999999999999999999999987 566


Q ss_pred             eceeeEeecccccchhhHHHHHHHHHHHHHHHHh-hchhhhHHHHHhhcccccchHHHHHhhhhhhhhhhhccCCCch-h
Q 036327          354 ANIDVILNATASGEATALVAEFKLALNAYVKELV-ASPVRSLAEVIAFNEKFSDIEKIEEFGQDIFLAAQATNGIGNT-E  431 (525)
Q Consensus       354 p~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  431 (525)
                      |.++.+.    ..+..++..|+...+..|+.... .....++.+++.+++.+.. .....+++...........++.. +
T Consensus       309 ~~~~~~~----~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  383 (497)
T PRK08137        309 LDDGDWG----EAEKVVLLHEFKAGLNAYLRSTAPHAPVRTLADLIAFNRAQHA-REMPYFGQELFEQAQAAPGLDDPAY  383 (497)
T ss_pred             CchhhHH----HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhhccch-hhhcccCHHHHHHHHccCCCCHHHH
Confidence            6443221    12345566787777776654321 1112334444443322110 11122333333333233333433 3


Q ss_pred             HHHHhhhhhc-chhhhhhhhhhccccccccCCCC----------------ccceeeecCCCCcccCCCCCCCCCcceeec
Q 036327          432 KAALLNLAKL-SRDGFEKAMTVNKLDALVTPRSD----------------IAPVLAIGGFPGINVPAGYDTEGVPFGINF  494 (525)
Q Consensus       432 ~~a~~~~r~~-~~~~~~~~~~~~~~DvLl~Pt~~----------------~t~~~n~~G~PaisvP~G~~~~GlPvGlQi  494 (525)
                      .++++.+++. .++.+.++|+++++|+||+||++                ++.+||++|+|++|||+|+. +|||+||||
T Consensus       384 ~~a~~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~~~ap~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~GlPvGvQl  462 (497)
T PRK08137        384 LDALADAKRLAGPEGIDAALKEHRLDALVAPTTGPAWLIDLINGDSFGGSSSTPAAVAGYPHLTVPMGQV-QGLPVGLSF  462 (497)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCEEEeCCCCCCcccccccccccccccccccHhhCCCeEEEeCCCC-CCcCeEEEE
Confidence            3443333433 24678899976679999999975                35689999999999999997 899999999


Q ss_pred             CCccCCCcceEeeeeccccceeccCCCCCCC
Q 036327          495 GGLRGTEPKLIEIAYGFEQATMIRKPPSFKP  525 (525)
Q Consensus       495 vg~~~~D~~LL~~A~~lE~~~~~~~~P~~~p  525 (525)
                      +|++|+|++||++|++||+..+||++|.|.|
T Consensus       463 ig~~~~d~~LL~~a~~lE~~~~~~~~p~~~~  493 (497)
T PRK08137        463 IGAAWSEARLLELGYAYEQATHARREPRFVE  493 (497)
T ss_pred             ECCCCCHHHHHHHHHHHHHhcCcCCCCCCCC
Confidence            9999999999999999999999999898764

>PRK11910 amidase; Provisional Back     alignment and domain information
>COG0154 GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK06828 amidase; Provisional Back     alignment and domain information
>PRK06707 amidase; Provisional Back     alignment and domain information
>PRK07042 amidase; Provisional Back     alignment and domain information
>PRK06169 putative amidase; Provisional Back     alignment and domain information
>PRK07486 amidase; Provisional Back     alignment and domain information
>PRK06170 amidase; Provisional Back     alignment and domain information
>PRK07488 indole acetimide hydrolase; Validated Back     alignment and domain information
>PRK07487 amidase; Provisional Back     alignment and domain information
>PRK09201 amidase; Provisional Back     alignment and domain information
>PRK06565 amidase; Validated Back     alignment and domain information
>PRK00012 gatA aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed Back     alignment and domain information
>TIGR00132 gatA glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit Back     alignment and domain information
>TIGR02715 amido_AtzE amidohydrolase, AtzE family Back     alignment and domain information
>PRK06102 hypothetical protein; Provisional Back     alignment and domain information
>PRK07056 amidase; Provisional Back     alignment and domain information
>PRK12470 amidase; Provisional Back     alignment and domain information
>PRK06061 amidase; Provisional Back     alignment and domain information
>PRK08186 allophanate hydrolase; Provisional Back     alignment and domain information
>PRK07869 amidase; Provisional Back     alignment and domain information
>PRK06529 amidase; Provisional Back     alignment and domain information
>PRK07235 amidase; Provisional Back     alignment and domain information
>PRK05962 amidase; Validated Back     alignment and domain information
>PF01425 Amidase: Amidase; InterPro: IPR000120 Amidase signature (AS) enzymes are a large group of hydrolytic enzymes that contain a conserved stretch of approximately 130 amino acids known as the AS sequence Back     alignment and domain information
>TIGR02713 allophanate_hyd allophanate hydrolase Back     alignment and domain information
>PRK07139 amidase; Provisional Back     alignment and domain information
>PRK08310 amidase; Provisional Back     alignment and domain information
>PLN02722 indole-3-acetamide amidohydrolase Back     alignment and domain information
>KOG1211 consensus Amidases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1212 consensus Amidases [Translation, ribosomal structure and biogenesis; Lipid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query525
1m21_A503 Crystal Structure Analysis Of The Peptide Amidase P 5e-75
3al0_A475 Crystal Structure Of The Glutamine Transamidosome F 9e-16
2gi3_A476 Crystal Structure Of Glutamyl-Trna(Gln) Amidotransf 2e-14
3h0l_A478 Structure Of Trna-Dependent Amidotransferase Gatcab 7e-14
2dc0_A434 Crystal Structure Of Amidase Length = 434 1e-13
2df4_A485 Structure Of Trna-Dependent Amidotransferase Gatcab 2e-12
3kfu_E471 Crystal Structure Of The Transamidosome Length = 47 4e-11
1obl_A414 Crystal Structure Of The S133a Mutant Of Malonamida 2e-09
1o9o_A414 Crystal Structure Of The S131a Mutant Of Malonamida 2e-09
4gyr_A 621 Granulibacter Bethesdensis Allophanate Hydrolase Ap 1e-08
1obi_A414 Crystal Structure Of The G130a Mutant Of Malonamida 3e-08
1ock_A412 The Crystal Structure Of Malonamidase E2 From Brady 3e-08
1obk_A414 Crystal Structure Of The R158q Mutant Of Malonamida 4e-08
1o9q_A414 Crystal Structure Of The S155c Mutant Of Malonamida 1e-07
1obj_A414 Crystal Structure Of The T150a Mutant Of Malonamida 2e-07
3a2p_A493 Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolas 2e-07
1o9n_A414 Crystal Structure Of The K62a Mutant Of Malonamidas 2e-07
3a2q_A493 Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolas 4e-07
3a1k_A521 Crystal Structure Of Rhodococcus Sp. N771 Amidase L 1e-06
3a1i_A521 Crystal Structure Of Rhodococcus Sp. N-771 Amidase 3e-06
>pdb|1M21|A Chain A, Crystal Structure Analysis Of The Peptide Amidase Pam In Complex With The Competitive Inhibitor Chymostatin Length = 503 Back     alignment and structure 
Iteration: 1

 Score =  278 bits (711), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 195/507 (38%), Positives = 275/507 (54%), Gaps = 40/507 (7%)
Query: 37  FSIKEATIEGIQLAFRQNQLASRQLVQFY---IGEIRRLNPVLNAVIEVNPDALYQADKA 93
           F   E  +  +Q      +L S  L Q Y   I  + R  P L AVIE+NPDAL +A  A
Sbjct: 6   FPYAETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPDALKEA--A 63
Query: 94  DYERKVKAPGSLVGLRGIPVLLKDMIGTKDKQNTTAGSFALLGSVVARDAGVVMKLRKAG 153
           + +R+ +       L GIP+LLKD I       T+AGS AL G     DA +V +LR AG
Sbjct: 64  ERDRERRDGRLRGPLHGIPLLLKDNINAA-PMATSAGSLALQG-FRPDDAYLVRRLRDAG 121
Query: 154 AIIMGKASLSEWADFRSLQAPNGFSARGGQGKNPYVLSADPCGSSSGPAISVAANLVAVS 213
           A+++GK +LSEWA+FR   + +G+SARGGQ +NPY +S  PCGSSSG A++VAANL +V+
Sbjct: 122 AVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRISHSPCGSSSGSAVAVAANLASVA 181
Query: 214 LGTETDGSILCPSSSNSVVGIKPTVGLTSLAGVIPVSPRQDTIGDICLSLFISDAKVXXX 273
           +GTETDGSI+CP++ N VVG+KPTVGL S  G+IP+S  QDT G +  S  ++DA     
Sbjct: 182 IGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARS--VADAAAVLT 239
Query: 274 XXXXXXVDYNDPATKAASYYIPYGGYKQFXXXXXXXXXXXXIVRNPFFNFDKGSALTQAF 333
                  D  DPAT        Y  Y               +++ P   +     +    
Sbjct: 240 AIAGR--DDADPATATMPGRAVY-DYTARLDPQGLRGKRIGLLQTPLLKY---RGMPPLI 293
Query: 334 NYHLQTLRQQGAVLVDYLEIANIDVILNATASGEATALVAEFKLALNAYVKELVASPVRS 393
                 LR+ GAV+V  +E+ N      A A  E T L+ EFK  L  Y     A P+RS
Sbjct: 294 EQAATELRRAGAVVVP-VELPN----QGAWAEAERTLLLYEFKAGLERYFNTHRA-PLRS 347
Query: 394 LAEVIAFNEKFSDIEKIEEFGQDIFLAAQATNGIGNTEKAALLNLAK--LSRDGFEKAMT 451
           LA++IAFN+  S  +++  FGQ++ + A AT G+ +       + A+     +G + A+ 
Sbjct: 348 LADLIAFNQAHSK-QELGLFGQELLVEADATAGLADPAYIRARSDARRLAGPEGIDAALA 406
Query: 452 VNKLDALVTPRSDIA-PV--------------LAIGGFPGINVPAGYDTEGVPFGINFGG 496
            ++LDALV P + +A P+               A+ G+P + VP G   +G+P G+ F G
Sbjct: 407 AHQLDALVAPTTGVAWPIRSEGDDFPGESYSAAAVAGYPSLTVPMG-QIDGLPVGLLFMG 465
Query: 497 LRGTEPKLIEIAYGFEQATMIRKPPSF 523
              +EPKLIE+AY +EQ T  R+PP F
Sbjct: 466 TAWSEPKLIEMAYAYEQRTRARRPPHF 492
>pdb|3AL0|A Chain A, Crystal Structure Of The Glutamine Transamidosome From Thermotoga Maritima In The Glutamylation State Length = 475 Back     alignment and structure
>pdb|2GI3|A Chain A, Crystal Structure Of Glutamyl-Trna(Gln) Amidotransferase Subunit A (Tm1272) From Thermotoga Maritima At 1.80 A Resolution Length = 476 Back     alignment and structure
>pdb|3H0L|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From Aquifex Aeolicus Length = 478 Back     alignment and structure
>pdb|2DC0|A Chain A, Crystal Structure Of Amidase Length = 434 Back     alignment and structure
>pdb|2DF4|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab Complexed With Mn2+ Length = 485 Back     alignment and structure
>pdb|3KFU|E Chain E, Crystal Structure Of The Transamidosome Length = 471 Back     alignment and structure
>pdb|1OBL|A Chain A, Crystal Structure Of The S133a Mutant Of Malonamidase E2 Complexed With Malonate From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure
>pdb|1O9O|A Chain A, Crystal Structure Of The S131a Mutant Of Malonamidase E2 Complexed With Malonamate From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure
>pdb|4GYR|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase Apo Length = 621 Back     alignment and structure
>pdb|1OBI|A Chain A, Crystal Structure Of The G130a Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure
>pdb|1OCK|A Chain A, The Crystal Structure Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 412 Back     alignment and structure
>pdb|1OBK|A Chain A, Crystal Structure Of The R158q Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure
>pdb|1O9Q|A Chain A, Crystal Structure Of The S155c Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure
>pdb|1OBJ|A Chain A, Crystal Structure Of The T150a Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure
>pdb|3A2P|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase Length = 493 Back     alignment and structure
>pdb|1O9N|A Chain A, Crystal Structure Of The K62a Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414 Back     alignment and structure
>pdb|3A2Q|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase Complexed With Substrate Length = 493 Back     alignment and structure
>pdb|3A1K|A Chain A, Crystal Structure Of Rhodococcus Sp. N771 Amidase Length = 521 Back     alignment and structure
>pdb|3A1I|A Chain A, Crystal Structure Of Rhodococcus Sp. N-771 Amidase Complexed With Benzamide Length = 521 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query525
1m22_A503 Peptide amidase, PAM; eleven-stranded beta sheet, 1e-177
1o9p_A414 Malonamidase E2; malonate; 1.8A {Bradyrhizobium ja 2e-53
2dc0_A434 Probable amidase; structural genomics, NPPSFA, nat 1e-41
3kfu_E471 Glutamyl-tRNA(Gln) amidotransferase subunit A; ASP 6e-40
3kfu_E471 Glutamyl-tRNA(Gln) amidotransferase subunit A; ASP 4e-05
3ip4_A485 Glutamyl-tRNA(Gln) amidotransferase subunit A; mul 8e-40
3ip4_A485 Glutamyl-tRNA(Gln) amidotransferase subunit A; mul 1e-04
3h0l_A478 Glutamyl-tRNA(Gln) amidotransferase subunit A; mul 7e-38
3h0l_A478 Glutamyl-tRNA(Gln) amidotransferase subunit A; mul 1e-04
3a2q_A493 6-aminohexanoate-cyclic-dimer hydrolase; alpha/bet 2e-35
3a2q_A493 6-aminohexanoate-cyclic-dimer hydrolase; alpha/bet 1e-05
2gi3_A476 Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1 2e-35
2gi3_A476 Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1 1e-04
3ppm_A573 Fatty-acid amide hydrolase 1; protein-inhibitor co 2e-34
3a1k_A521 Amidase; AS family enzyme, hydrolase; 2.17A {Rhodo 4e-32
3a1k_A521 Amidase; AS family enzyme, hydrolase; 2.17A {Rhodo 7e-04
1qzv_F154 Plant photosystem I: subunit PSAF; photosynthesis, 7e-04
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A* Length = 503 Back     alignment and structure
 Score =  506 bits (1306), Expect = e-177
 Identities = 203/515 (39%), Positives = 285/515 (55%), Gaps = 42/515 (8%)

Query: 32  ANSYAFSIKEATIEGIQLAFRQNQLASRQLVQFYIGEIRRLN---PVLNAVIEVNPDALY 88
           + +  F   E  +  +Q      +L S  L Q Y+  I  L+   P L AVIE+NPDAL 
Sbjct: 1   SRNVPFPYAETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPDALK 60

Query: 89  QADKADYERKVKAPGSLVGLRGIPVLLKDMIGTKDKQNTTAGSFALLGSVVARDAGVVMK 148
           +A + D ER+         L GIP+LLKD I       T+AGS AL G     DA +V +
Sbjct: 61  EAAERDRERR--DGRLRGPLHGIPLLLKDNINAAP-MATSAGSLALQG-FRPDDAYLVRR 116

Query: 149 LRKAGAIIMGKASLSEWADFRSLQAPNGFSARGGQGKNPYVLSADPCGSSSGPAISVAAN 208
           LR AGA+++GK +LSEWA+FR   + +G+SARGGQ +NPY +S  PCGSSSG A++VAAN
Sbjct: 117 LRDAGAVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRISHSPCGSSSGSAVAVAAN 176

Query: 209 LVAVSLGTETDGSILCPSSSNSVVGIKPTVGLTSLAGVIPVSPRQDTIGDICLSLFISDA 268
           L +V++GTETDGSI+CP++ N VVG+KPTVGL S  G+IP+S  QDT G +  S  ++DA
Sbjct: 177 LASVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARS--VADA 234

Query: 269 KVSSSNGSSIS-VDYNDPATKAASYYIPYGGYKQFLKLYGLKGKRLGIVRNPFFNFDKGS 327
                  ++I+  D  DPAT        Y  Y   L   GL+GKR+G+++ P     K  
Sbjct: 235 AAVL---TAIAGRDDADPATATMPGRAVY-DYTARLDPQGLRGKRIGLLQTP---LLKYR 287

Query: 328 ALTQAFNYHLQTLRQQGAVLVDYLEIANIDVILNATASGEATALVAEFKLALNAYVKELV 387
            +          LR+ GAV+V  +E+ N      A    E T L+ EFK  L  Y     
Sbjct: 288 GMPPLIEQAATELRRAGAVVVP-VELPNQGAWAEA----ERTLLLYEFKAGLERYFNTH- 341

Query: 388 ASPVRSLAEVIAFNEKFSDIEKIEEFGQDIFLAAQATNGIGNTE--KAALLNLAKLSRDG 445
            +P+RSLA++IAFN+  S  E +  FGQ++ + A AT G+ +    +A          +G
Sbjct: 342 RAPLRSLADLIAFNQAHSKQE-LGLFGQELLVEADATAGLADPAYIRARSDARRLAGPEG 400

Query: 446 FEKAMTVNKLDALVTPRSDIAP---------------VLAIGGFPGINVPAGYDTEGVPF 490
            + A+  ++LDALV P + +A                  A+ G+P + VP G   +G+P 
Sbjct: 401 IDAALAAHQLDALVAPTTGVAWPIRSEGDDFPGESYSAAAVAGYPSLTVPMGQ-IDGLPV 459

Query: 491 GINFGGLRGTEPKLIEIAYGFEQATMIRKPPSFKP 525
           G+ F G   +EPKLIE+AY +EQ T  R+PP F  
Sbjct: 460 GLLFMGTAWSEPKLIEMAYAYEQRTRARRPPHFDT 494
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A Length = 414 Back     alignment and structure
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus} Length = 434 Back     alignment and structure
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus} Length = 471 Back     alignment and structure
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus} Length = 471 Back     alignment and structure
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A Length = 485 Back     alignment and structure
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A Length = 485 Back     alignment and structure
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A* Length = 478 Back     alignment and structure
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A* Length = 478 Back     alignment and structure
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A Length = 493 Back     alignment and structure
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A Length = 493 Back     alignment and structure
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A* Length = 476 Back     alignment and structure
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A* Length = 476 Back     alignment and structure
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A* Length = 573 Back     alignment and structure
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A Length = 521 Back     alignment and structure
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A Length = 521 Back     alignment and structure
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query525
1m22_A503 Peptide amidase, PAM; eleven-stranded beta sheet, 100.0
3ip4_A485 Glutamyl-tRNA(Gln) amidotransferase subunit A; mul 100.0
3h0l_A478 Glutamyl-tRNA(Gln) amidotransferase subunit A; mul 100.0
3kfu_E471 Glutamyl-tRNA(Gln) amidotransferase subunit A; ASP 100.0
2dc0_A434 Probable amidase; structural genomics, NPPSFA, nat 100.0
3a2q_A493 6-aminohexanoate-cyclic-dimer hydrolase; alpha/bet 100.0
2gi3_A476 Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1 100.0
3ppm_A573 Fatty-acid amide hydrolase 1; protein-inhibitor co 100.0
1o9p_A414 Malonamidase E2; malonate; 1.8A {Bradyrhizobium ja 100.0
3a1k_A521 Amidase; AS family enzyme, hydrolase; 2.17A {Rhodo 100.0
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A* Back     alignment and structure
Probab=100.00  E-value=7e-106  Score=861.58  Aligned_cols=471  Identities=42%  Similarity=0.660  Sum_probs=392.7

Q ss_pred             eeeeeeccchhhhhhHhhhhhhhhhhhHHhhhhhhhhcc---ccceeeeEeCcchhccccchhhhhcccCCCceecccCc
Q 036327           35 YAFSIKEATIEGIQLAFRQNQLASRQLVQFYIGEIRRLN---PVLNAVIEVNPDALYQADKADYERKVKAPGSLVGLRGI  111 (525)
Q Consensus        35 ~~~~~~~~s~~~l~~~~~~g~~s~~ev~~~~l~ri~~~~---~~lna~~~~~~~al~~A~~~d~~~~~~~g~~~gpL~Gv  111 (525)
                      ..|++.++|+.+|+++|++|++|++||+++||+||+++|   +.+|||+++++||+++|+++|+++  ++|+..||||||
T Consensus         4 ~~~~~~~~~~~~l~~~l~~g~~s~~el~~a~l~ri~~~~~~~~~lna~~~~~~~Al~~A~~~d~~~--~~g~~~gpL~Gv   81 (503)
T 1m22_A            4 VPFPYAETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPDALKEAAERDRER--RDGRLRGPLHGI   81 (503)
T ss_dssp             -CCTTTTCCHHHHHHHHHTTSCCHHHHHHHHHHHHHHHTTSTTCCCCEEEECTTHHHHHHHHHHHH--HTTCCCSTTTTC
T ss_pred             CCCCcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCceEEEEECCHHHHHHHHHHHHHH--HcCCCCCCcCCc
Confidence            467888999999999999999999999999999999999   999999999988999999999988  788888999999


Q ss_pred             hhhhhhhhcccccCCCCcccceeeccccccccceeeeeeccceeEeeccccccccccccccCCCCcccCCCCCCCceeee
Q 036327          112 PVLLKDMIGTKDKQNTTAGSFALLGSVVARDAGVVMKLRKAGAIIMGKASLSEWADFRSLQAPNGFSARGGQGKNPYVLS  191 (525)
Q Consensus       112 Pi~vKD~~~~~gg~~tt~Gs~~~~~~~~~~da~~V~~Lr~aGaIi~GKTn~~E~~~~~~~~~~~~~n~~~G~t~NP~~~~  191 (525)
                      ||+|||||+++| ++||+||..+.++++ +||++|+|||+|||||+||||||||+++.++.+..++|++||+|+||||++
T Consensus        82 Pi~vKD~~~v~G-~~Tt~Gs~~~~~~~~-~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~~~~~~n~~~G~t~NP~~~~  159 (503)
T 1m22_A           82 PLLLKDNINAAP-MATSAGSLALQGFRP-DDAYLVRRLRDAGAVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRIS  159 (503)
T ss_dssp             EEEEETTBCCTT-SCCCTTCGGGTTCCC-CCCHHHHHHHHTTCEEEEEECCSHHHHCSCTTCCTTEETTTEECCCTTSTT
T ss_pred             eeEeecccccCC-CCcCCCCHhhcCCCC-CCcHHHHHHHHCCCEEEeccCHHHHhcccCCCCCCCCCCCCCCCCCCCCCC
Confidence            999999999997 999999999999999 999999999999999999999999998655546789999999999999999


Q ss_pred             cCCCCCCCCCceeeeeeeeeeeecccCCCeeeccCCCCceeeecccccccccccceecCCCCccccceeeeeeeccceec
Q 036327          192 ADPCGSSSGPAISVAANLVAVSLGTETDGSILCPSSSNSVVGIKPTVGLTSLAGVIPVSPRQDTIGDICLSLFISDAKVS  271 (525)
Q Consensus       192 ~~~GGSSgGsaaaVAag~~p~alGtDtgGSiRiPAa~~Gv~GlKPT~G~v~~~G~~~~~~~~d~~GpmaRsV~~~D~a~~  271 (525)
                      |+|||||||||||||+|++++|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||||||  +|++++
T Consensus       160 ~~pGGSSgGsAaAVAag~~~~alGtDtgGSIRiPAa~cGvvGlKPT~Grvs~~G~~p~~~sld~~Gp~arsv--~D~a~~  237 (503)
T 1m22_A          160 HSPCGSSSGSAVAVAANLASVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSV--ADAAAV  237 (503)
T ss_dssp             BCCCSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHTTSEEEECCTTSSCCTTBCCSCTTTCEEEEEESSH--HHHHHH
T ss_pred             CCCCccHHHHHHHHHcCCCceeeecCCCchhhhhHHHhCceEEECCCCCcCCCCcCCccCCCCeeCcccCCH--HHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999  999999


Q ss_pred             cCCCceeeeecCCcccccceeeeecchHHHHHHHhccCCceeeeeeCCccccCCcchhHHHHHHHHHHHhhccceeeeee
Q 036327          272 SSNGSSISVDYNDPATKAASYYIPYGGYKQFLKLYGLKGKRLGIVRNPFFNFDKGSALTQAFNYHLQTLRQQGAVLVDYL  351 (525)
Q Consensus       272 l~~~vl~g~d~~d~~~~~~~~~~p~~~~~~~~~~~~~~~lrIGv~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~Vve~~  351 (525)
                      +  ++|+|+|+.|+.+...+. .+..+|...+....++++||||+.+++ .  ++++++++++++++.|+++||+|++ +
T Consensus       238 l--~vl~g~d~~d~~~~~~~~-~~~~~~~~~~~~~~~~~lrIgv~~~~~-~--~~~~v~~a~~~a~~~L~~~G~~v~~-~  310 (503)
T 1m22_A          238 L--TAIAGRDDADPATATMPG-RAVYDYTARLDPQGLRGKRIGLLQTPL-L--KYRGMPPLIEQAATELRRAGAVVVP-V  310 (503)
T ss_dssp             H--HHHCCCCTTCGGGGGCTT-CCCCCGGGGCCTTTTTTCEEEEECSGG-G--GSTTHHHHHHHHHHHHHHTTCEEEE-E
T ss_pred             H--HHHcCCCCCCcccccccc-ccccchhhhccccCCCCCEEEEECccc-c--CCHHHHHHHHHHHHHHHHcCCEEEE-e
Confidence            9  999999999976543210 011234433322246889999998754 2  7999999999999999999999997 6


Q ss_pred             eeeceeeEeecccccchhhHHHHHHHHHHHHHHHHhhchhhhHHHHHhhcccccchHHHHHhhhhhhhhhhhccCCC-ch
Q 036327          352 EIANIDVILNATASGEATALVAEFKLALNAYVKELVASPVRSLAEVIAFNEKFSDIEKIEEFGQDIFLAAQATNGIG-NT  430 (525)
Q Consensus       352 ~~p~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  430 (525)
                      ++|.++++.    ..++.++.+|+..++..|+.... .+.+++.+++.+++.++. +....+++..+.+......++ .+
T Consensus       311 ~~p~~~~~~----~~~~~~~~~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  384 (503)
T 1m22_A          311 ELPNQGAWA----EAERTLLLYEFKAGLERYFNTHR-APLRSLADLIAFNQAHSK-QELGLFGQELLVEADATAGLADPA  384 (503)
T ss_dssp             CCTTTTTTH----HHHHHHHHHHHHHHHHHHHHHTT-CSCCSHHHHHHHHHHTHH-HHSSSSCCHHHHHHHTCCCTTCHH
T ss_pred             CCCcHHHHH----HHHHHHHHHHHHHHHHHHHHhcC-cccccHHHHHHHhhhcch-hcccccCHHHHHHHHhcCCCCHHH
Confidence            877543221    12345667888888888876542 334455555544322210 111124444444444333344 34


Q ss_pred             hHHHHhhhhhcchhh-hhhhhhhccccccccCCCC---------------ccceeeecCCCCcccCCCCCCCCCcceeec
Q 036327          431 EKAALLNLAKLSRDG-FEKAMTVNKLDALVTPRSD---------------IAPVLAIGGFPGINVPAGYDTEGVPFGINF  494 (525)
Q Consensus       431 ~~~a~~~~r~~~~~~-~~~~~~~~~~DvLl~Pt~~---------------~t~~~n~~G~PaisvP~G~~~~GlPvGlQi  494 (525)
                      |.++.+.++++.+++ +.++|+++++|+||+||++               +|.+||++|+|+||||+|+. +|||+||||
T Consensus       385 ~~~a~~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~~~a~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~GlPvGvql  463 (503)
T 1m22_A          385 YIRARSDARRLAGPEGIDAALAAHQLDALVAPTTGVAWPIRSEGDDFPGESYSAAAVAGYPSLTVPMGQI-DGLPVGLLF  463 (503)
T ss_dssp             HHHHHHHHHHHHTTTTHHHHHHHTTCSEEEEECCCCCCBTTC---CCTTCCHHHHHHHTCCEEEEEEEEE-TTEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCEEEeCCCccCcccccccCcccccccccchhhCCCeEEeccccC-CCCCeEEEE
Confidence            555555555554453 9999986679999999873               56789999999999999987 899999999


Q ss_pred             CCccCCCcceEeeeeccccceeccCCCCCCC
Q 036327          495 GGLRGTEPKLIEIAYGFEQATMIRKPPSFKP  525 (525)
Q Consensus       495 vg~~~~D~~LL~~A~~lE~~~~~~~~P~~~p  525 (525)
                      +|++|+|++||++|++||++++|+++|.+.|
T Consensus       464 vg~~~~d~~lL~~A~~~E~~~~~~~~p~~~~  494 (503)
T 1m22_A          464 MGTAWSEPKLIEMAYAYEQRTRARRPPHFDT  494 (503)
T ss_dssp             ECSTTCHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_pred             ECCCCChHHHHHHHHHHHHhhCCCCCCCCCC
Confidence            9999999999999999999999999998876
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: c.117.1.1 PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A Back     alignment and structure
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A* Back     alignment and structure
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus} Back     alignment and structure
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus} Back     alignment and structure
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A Back     alignment and structure
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A* Back     alignment and structure
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A* Back     alignment and structure
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A Back     alignment and structure
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 525
d2f2aa1485 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransf 6e-67
d1m22a_490 c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomon 1e-63
d2gi3a1475 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransf 3e-59
d1mt5a_537 c.117.1.1 (A:) Fatty acid amide hydrolase (oleamid 3e-38
d1ocka_412 c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium jap 2e-18
d1ocka_412 c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium jap 1e-09
>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase subunit A {Staphylococcus aureus [TaxId: 1280]} Length = 485 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Glutamyl-tRNA(Gln) amidotransferase subunit A
species: Staphylococcus aureus [TaxId: 1280]

 Score =  221 bits (565), Expect = 6e-67
 Identities = 119/507 (23%), Positives = 215/507 (42%), Gaps = 61/507 (12%)

Query: 38  SIKEATIEGIQLAFRQNQLASRQLVQFYIGEIRRLNPVLNAVIEVNPD-ALYQADKADYE 96
           SI+  ++E +    +  ++    +V+     I   +P + + + ++ + A+ +A + D  
Sbjct: 2   SIRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDEL 61

Query: 97  RKVKAPGSLVG-LRGIPVLLKDMIGTKDKQNTTAGSFALLGSVVARDAGVVMKLRKAGAI 155
           +   A   + G L GIP+ +KD I T     TT  S  L G V   ++ V+ KL K  A+
Sbjct: 62  Q---AKDQMDGKLFGIPMGIKDNIITNG-LETTCASKMLEGFVPIYESTVMEKLHKENAV 117

Query: 156 IMGKASLSEWADFRSLQAPNGFSARGGQGKNPYVLSADPCGSSSGPAISVAANLVAVSLG 215
           ++GK ++ E+A        +  ++   +  NP+   A P GSS G A +VAA LV +SLG
Sbjct: 118 LIGKLNMDEFAMG-----GSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPLSLG 172

Query: 216 TETDGSILCPSSSNSVVGIKPTVGLTSLAGVIPVSPRQDTIGDICLSLFISDAKVSSSNG 275
           ++T GSI  P++   VVG+KPT G  S  G++  +   D IG +  +  + D  +     
Sbjct: 173 SDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRN--VKDNAI----- 225

Query: 276 SSISVDYNDPATKAASYYIPYGGYKQFLKLYGLKGKRLGIVRNPFFNFDKGSALTQAFNY 335
             +          + S  +    +   +    +KG ++ + +  +        + +A   
Sbjct: 226 -VLEAISGADVNDSTSAPVDDVDFTSEIGK-DIKGLKVALPKE-YLGEGVADDVKEAVQN 282

Query: 336 HLQTLRQQGAVLVDYLEIANIDVILNA---TASGEATALVAEFKLALNAYVKELVASPVR 392
            ++TL+  GAV+ + + + N    + +    AS EA++ ++ F      Y     +    
Sbjct: 283 AVETLKSLGAVVEE-VSLPNTKFGIPSYYVIASSEASSNLSRFDGIRYGY----HSKEAH 337

Query: 393 SLAEVIAFN--EKFSDIEKIEEFGQDIFLAAQAT-NGIGNTEKAALLNLAKLSRDGFEKA 449
           SL E+   +  E F       E  + IFL   A  +G  +        +  L ++ F+K 
Sbjct: 338 SLEELYKMSRSEGFGK-----EVKRRIFLGTFALSSGYYDAYYKKSQKVRTLIKNDFDKV 392

Query: 450 MTVNKLDALVTPRSDIAP---------------------VLAIGGFPGINVPAGYDTEGV 488
                 D +V P +                          + + G PGI+VP G  + G 
Sbjct: 393 F--ENYDVVVGPTAPTTAFNLGEEIDDPLTMYANDLLTTPVNLAGLPGISVPCGQ-SNGR 449

Query: 489 PFGINFGGLRGTEPKLIEIAYGFEQAT 515
           P G+ F G    E  L  +AY +E   
Sbjct: 450 PIGLQFIGKPFDEKTLYRVAYQYETQY 476
>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas maltophilia [TaxId: 40324]} Length = 490 Back     information, alignment and structure
>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase subunit A {Thermotoga maritima [TaxId: 2336]} Length = 475 Back     information, alignment and structure
>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 537 Back     information, alignment and structure
>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 375]} Length = 412 Back     information, alignment and structure
>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 375]} Length = 412 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query525
d2f2aa1485 Glutamyl-tRNA(Gln) amidotransferase subunit A {Sta 100.0
d1m22a_490 Peptide amidase Pam {Stenotrophomonas maltophilia 100.0
d1mt5a_537 Fatty acid amide hydrolase (oleamide hydrolase) {R 100.0
d2gi3a1475 Glutamyl-tRNA(Gln) amidotransferase subunit A {The 100.0
d1ocka_412 Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 100.0
>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase subunit A {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Glutamyl-tRNA(Gln) amidotransferase subunit A
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=2.7e-100  Score=817.63  Aligned_cols=451  Identities=25%  Similarity=0.366  Sum_probs=371.3

Q ss_pred             eeeeccchhhhhhHhhhhhhhhhhhHHhhhhhhhhccccceeeeEeCcc-hhccccchhhhhcccCCCceecccCchhhh
Q 036327           37 FSIKEATIEGIQLAFRQNQLASRQLVQFYIGEIRRLNPVLNAVIEVNPD-ALYQADKADYERKVKAPGSLVGLRGIPVLL  115 (525)
Q Consensus        37 ~~~~~~s~~~l~~~~~~g~~s~~ev~~~~l~ri~~~~~~lna~~~~~~~-al~~A~~~d~~~~~~~g~~~gpL~GvPi~v  115 (525)
                      ++|++.|+.||+++|++|++|++||+++||+||+++|+.+|||+++++| |+++|+++|+++  ++|+.+||||||||+|
T Consensus         1 m~~~~~s~~~l~~~~~~~~~s~~e~~~~~l~ri~~~~~~lna~~~~~~~~a~~~A~~~d~~~--~~~~~~gpL~GiPi~v   78 (485)
T d2f2aa1           1 MSIRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQ--AKDQMDGKLFGIPMGI   78 (485)
T ss_dssp             CCSTTCCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHH--HTTCCCSTTTTCEEEE
T ss_pred             CCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCccEEEEeCHHHHHHHHHHHHHHH--HCCCCCCCcCcCeEEE
Confidence            3578899999999999999999999999999999999999999999998 999999999998  7899999999999999


Q ss_pred             hhhhcccccCCCCcccceeeccccccccceeeeeeccceeEeeccccccccccccccCCCCcccCCCCCCCceeeecCCC
Q 036327          116 KDMIGTKDKQNTTAGSFALLGSVVARDAGVVMKLRKAGAIIMGKASLSEWADFRSLQAPNGFSARGGQGKNPYVLSADPC  195 (525)
Q Consensus       116 KD~~~~~gg~~tt~Gs~~~~~~~~~~da~~V~~Lr~aGaIi~GKTn~~E~~~~~~~~~~~~~n~~~G~t~NP~~~~~~~G  195 (525)
                      ||+|+++| ++||+||..+.++++.+|+++|++||++|||++||||||||++     +..+.|.+||+|+||||+.++||
T Consensus        79 KD~~~v~g-~~tt~Gs~~~~~~~~~~d~~~v~~l~~~Gai~~gkt~~~e~~~-----~~~~~n~~~g~~~NP~~~~~~~G  152 (485)
T d2f2aa1          79 KDNIITNG-LETTCASKMLEGFVPIYESTVMEKLHKENAVLIGKLNMDEFAM-----GGSTETSYFKKTVNPFDHKAVPG  152 (485)
T ss_dssp             ETTBCBTT-BCCCTTCGGGTTCCCSSCCHHHHHHHHTTCEEEEEECCSGGGC-----CSSSTTCSSCCCCBTTBTTBCCC
T ss_pred             EcccccCC-CccCCcChhhccCCccccccccccccccccccccccchhhhcc-----cccccCccccCcCCCCCcccccC
Confidence            99999997 9999999999999999999999999999999999999999999     78899999999999999999999


Q ss_pred             CCCCCCceeeeeeeeeeeecccCCCeeeccCCCCceeeecccccccccccceecCCCCccccceeeeeeeccceeccCCC
Q 036327          196 GSSSGPAISVAANLVAVSLGTETDGSILCPSSSNSVVGIKPTVGLTSLAGVIPVSPRQDTIGDICLSLFISDAKVSSSNG  275 (525)
Q Consensus       196 GSSgGsaaaVAag~~p~alGtDtgGSiRiPAa~~Gv~GlKPT~G~v~~~G~~~~~~~~d~~GpmaRsV~~~D~a~~l~~~  275 (525)
                      |||||||++||+|++++|+|||||||||+||+||||||||||+|+||+.|++|+++++|++|||||+|  +|+++++  +
T Consensus       153 GSSgGsaaavA~g~~~~alGtDt~GSiR~PAa~~Gl~G~kPt~G~is~~g~~~~~~~~d~~Gpmar~v--~D~~~ll--~  228 (485)
T d2f2aa1         153 GSSGGSAAAVAAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNV--KDNAIVL--E  228 (485)
T ss_dssp             SSSHHHHHHHHTTSCSCEEEECSSSTTHHHHHHTTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSH--HHHHHHH--H
T ss_pred             CccccchhhHHhccCceEEecCCCchhhhhHHHhCceeecCCCCCCCCCCCCCCcccCCeeccccCCH--HHHHHHH--h
Confidence            99999999999999999999999999999999999999999999999999999999999999999999  9999999  9


Q ss_pred             ceeeeecCCcccccceeeeecchHHHHHHHhccCCceeeeeeCCccccCCcchhHHHHHHHHHHHhhccceeeeeeeeec
Q 036327          276 SSISVDYNDPATKAASYYIPYGGYKQFLKLYGLKGKRLGIVRNPFFNFDKGSALTQAFNYHLQTLRQQGAVLVDYLEIAN  355 (525)
Q Consensus       276 vl~g~d~~d~~~~~~~~~~p~~~~~~~~~~~~~~~lrIGv~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~Vve~~~~p~  355 (525)
                      +|.|+++.|+.+.+.    |..+|...+. ..++++|||++.+++.. .++++++++++++++.|+++|++|++ +++|+
T Consensus       229 ~~~g~~~~d~~~~~~----~~~~~~~~~~-~~~~~lrig~~~~~~~~-~~~~~i~~a~~~a~~~L~~~G~~v~e-v~lp~  301 (485)
T d2f2aa1         229 AISGADVNDSTSAPV----DDVDFTSEIG-KDIKGLKVALPKEYLGE-GVADDVKEAVQNAVETLKSLGAVVEE-VSLPN  301 (485)
T ss_dssp             HHBSCBTTBTTSCCC----CCCCCSTTTT-CCCTTCEEEEEGGGGST-TSCHHHHHHHHHHHHHHHHTTCEEEE-ECCTT
T ss_pred             hcccccccccccCCC----Cccchhhhhc-CCccCCEEEEEcccccC-cCCHHHHHHHHHHHHHHHHCCCEEEE-eCCCc
Confidence            999999999766544    3334554443 45789999999887665 68999999999999999999999998 78876


Q ss_pred             eeeEeecccccchhhHHHHHHHHHHHHHHHH---hhchhhhHHHHHhhcccccchHHHHHhhhhhhhh-----hhhccCC
Q 036327          356 IDVILNATASGEATALVAEFKLALNAYVKEL---VASPVRSLAEVIAFNEKFSDIEKIEEFGQDIFLA-----AQATNGI  427 (525)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~  427 (525)
                      ++...    ..+..+...|+...+..|....   ......++.++....       ....++++...+     .......
T Consensus       302 ~~~~~----~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~~~~~~g~~~~~~~~  370 (485)
T d2f2aa1         302 TKFGI----PSYYVIASSEASSNLSRFDGIRYGYHSKEAHSLEELYKMS-------RSEGFGKEVKRRIFLGTFALSSGY  370 (485)
T ss_dssp             GGGHH----HHHHHHHHHHHHHHTTTCSSSSSSCCCSSCCSHHHHHHHH-------HHHHSCHHHHHHHHHHHHHHSTTT
T ss_pred             hhhhH----HHHHHHHHHHHHHHHHHhhhhhhccccccccCHHHHHHHh-------hhhhcCHHHHHHHHhhhhhhcchh
Confidence            53221    1123344455544433221100   001112233332221       111222222111     1111222


Q ss_pred             CchhHHHHhhhhhcchhhhhhhhhhccccccccCCCC---------------------ccceeeecCCCCcccCCCCCCC
Q 036327          428 GNTEKAALLNLAKLSRDGFEKAMTVNKLDALVTPRSD---------------------IAPVLAIGGFPGINVPAGYDTE  486 (525)
Q Consensus       428 ~~~~~~a~~~~r~~~~~~~~~~~~~~~~DvLl~Pt~~---------------------~t~~~n~~G~PaisvP~G~~~~  486 (525)
                      ....+...++.+..+++.++++|+  ++|+||+||++                     +|.+||++|+|++|||+|+. +
T Consensus       371 ~~a~~~~~~~~~~~~~~~~~~~f~--~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~G~~-d  447 (485)
T d2f2aa1         371 YDAYYKKSQKVRTLIKNDFDKVFE--NYDVVVGPTAPTTAFNLGEEIDDPLTMYANDLLTTPVNLAGLPGISVPCGQS-N  447 (485)
T ss_dssp             TTTTHHHHHHHHHHHHHHHHHHTT--TCSEEEEESSSSSCCBTTTSTTCHHHHHGGGTTTHHHHHHTCCEEEEEEEEE-T
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHc--cCCEEEeCCCCCCCCCcccccCCHHHHhhhhHHHHHHHHHCCCeEEEECCCC-C
Confidence            233333444444445666888887  69999999975                     46789999999999999974 8


Q ss_pred             CCcceeecCCccCCCcceEeeeeccccceeccCC
Q 036327          487 GVPFGINFGGLRGTEPKLIEIAYGFEQATMIRKP  520 (525)
Q Consensus       487 GlPvGlQivg~~~~D~~LL~~A~~lE~~~~~~~~  520 (525)
                      |||+||||+|++|+|++||++|++||++++|+..
T Consensus       448 GlPvGlQiig~~~~D~~LL~~A~~~E~~~~~~~~  481 (485)
T d2f2aa1         448 GRPIGLQFIGKPFDEKTLYRVAYQYETQYNLHDV  481 (485)
T ss_dssp             TEEEEEEEECSTTCHHHHHHHHHHHHHHSCCTTT
T ss_pred             CCCEeEEEECCCCCHHHHHHHHHHHHhhCCCCcC
Confidence            9999999999999999999999999999999754
>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas maltophilia [TaxId: 40324]} Back     information, alignment and structure
>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase subunit A {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 375]} Back     information, alignment and structure