Citrus Sinensis ID: 036330

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------
Protein Sequence
MENAQLLQVKRGLLAWVSICFIQMHGYRGCLETERTALLEIKRFFIAVRDTGYKDEILTSWVDDEMSDCCRWEQVKCVNATTRRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPNQGMFI
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccEEEcccccccEEEEEcccccccccccccccccccccccccEEEccccccccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccEEccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccEEEEccccccEEEEEEccccccccccccccHHHcccHHHHcEEEccccccccccccccccHHHHcccccEEEEcccccccccccHHHcccccccEEEccccccccccccccccc
Coil and Loop (DISEMBL)
MENAQLLQVKRGLLAWVSICFIQMHGYRGCLETERTALLEIKRFFIAVRdtgykdeilTSWVddemsdccrwEQVKCVNATTRRVKELSldgitlgansgflnlsmflpfqelesldlsynsFYGVYEKEGMYLSIGSLKWLKILNLYSnnvnnsllpSLTTIISltnlslgycgiegfipnqgmfi
Flexible Loop (DISEMBL)
MENAQLLQVKRGLLAWVSICFIQMHGYRGCLETERTALLEIKRFFIAVRDTGYKDEILTSWVDDEMSDCCRWEQVKCVNATTRRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPNQGMFI
Low Complexity Region (SEG)
MENAQLLQVKRGLLAWVSICFIQMHGYRGCLETERTALLEIKRFFIAVRDTGYKDEILTSWVDDEMSDCCRWEQVKCVNATTRRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKIlnlysnnvnnsllpslttiisltnlslGYCGIEGFIPNQGMFI
Disordered region (IsUnstruct)
*****LLQVKRGLLAWVSICFIQMHGYRGCLETERTALLEIKRFFIAVRDTGYKDEILTSWVDDEMSDCCRWEQVKCVNATTRRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPN*****
Disordered Region (DISOPRED)
********VKRGLLAWVSICFIQMHGYR*CLETERTALLEIKRFFIAVRDTGYKDEILTSWVDDEMSDCCRWEQVKCVNATTRRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPNQGMFI
Disordered Region (DISEMBL)
MENAQLLQVKRGLLAWVSICFIQMHGYRGCLETERTALLEIKRFFIAVRDTGYKDEILTSWVDDEMSDCCRWEQVKCVNATTRRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPNQGMFI
Disordered Region (DISPRO)
*ENAQLLQVKRGLLAWVSICFIQMHGYRGCLETERTALLEIKRFFIAVRD***KDEILTSWVDDEMSDCCRWEQVKCVNATTRRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPNQGMFI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MENAQLLQVKRGLLAWVSICFIQMHGYRGCLETERTALLEIKRFFIAVRDTGYKDEILTSWVDDEMSDCCRWEQVKCVNATTRRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPNQGMFI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	187	2.2.26 [Sep-21-2011]
Q9M2Z1	1002	Leucine-rich repeat recep	no	no	0.737	0.137	0.343	2e-06
Q9LRT1	1016	Probably inactive leucine	no	no	0.625	0.115	0.333	2e-06
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.786	0.117	0.282	2e-05
Q6XAT2	967	LRR receptor-like serine/	no	no	0.877	0.169	0.257	5e-05
C0LGQ9	1037	Probable LRR receptor-lik	no	no	0.695	0.125	0.324	8e-05
Q42371	976	LRR receptor-like serine/	no	no	0.732	0.140	0.305	0.0001
Q9SD62	1025	Putative receptor-like pr	no	no	0.572	0.104	0.364	0.0003
Q9ZVR7	1008	Phytosulfokine receptor 1	no	no	0.695	0.128	0.301	0.0004
Q05091	330	Polygalacturonase inhibit	N/A	no	0.711	0.403	0.316	0.0004
C0LGP4	1010	Probable LRR receptor-lik	no	no	0.786	0.145	0.269	0.0007

>sp|Q9M2Z1|BAME2_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM2 OS=Arabidopsis thaliana GN=BAM2 PE=1 SV=1

 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/169 (34%), Positives = 79/169 (46%), Gaps = 31/169 (18%)

Query: 33  TERTALLEIKRFFIAVRDTGYKDEILTSWVDDEMSDCCRWEQVKCVNATTRRVKELSLDG 92
           TE  ALL +K  F     +     +LTSW  +  +  C W  V C + + R V  L L G
Sbjct: 26  TELHALLSLKSSFTIDEHS----PLLTSW--NLSTTFCSWTGVTC-DVSLRHVTSLDLSG 78

Query: 93  I----TLGANSGFL----NLSMF-------LPFQ-----ELESLDLSYNSFYGVYEKEGM 132
           +    TL ++   L    NLS+        +P Q     EL  L+LS N F G +  E  
Sbjct: 79  LNLSGTLSSDVAHLPLLQNLSLAANQISGPIPPQISNLYELRHLNLSNNVFNGSFPDE-- 136

Query: 133 YLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIP 181
            LS G L  L++L+LY+NN+   L  SLT +  L +L LG     G IP
Sbjct: 137 -LSSG-LVNLRVLDLYNNNLTGDLPVSLTNLTQLRHLHLGGNYFSGKIP 183

Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9LRT1|Y3804_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 OS=Arabidopsis thaliana GN=At3g28040 PE=2 SV=1

 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 68/144 (47%), Gaps = 27/144 (18%)

Query: 58  LTSWVDDEMSDCCRWEQVKCVNATTRRVKELSLDGITLG------------------ANS 99
           L SW +D+ + C  W  VKC N  T RV ELSLDG+ L                   +N+
Sbjct: 54  LESWTEDDNTPCS-WSYVKC-NPKTSRVIELSLDGLALTGKINRGIQKLQRLKVLSLSNN 111

Query: 100 GFL-NLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLP 158
            F  N++       L+ LDLS+N+  G         S+GS+  L+ L+L  N+ + +L  
Sbjct: 112 NFTGNINALSNNNHLQKLDLSHNNLSGQIPS-----SLGSITSLQHLDLTGNSFSGTLSD 166

Query: 159 SL-TTIISLTNLSLGYCGIEGFIP 181
            L     SL  LSL +  +EG IP
Sbjct: 167 DLFNNCSSLRYLSLSHNHLEGQIP 190

Arabidopsis thaliana (taxid: 3702)

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 77/163 (47%), Gaps = 16/163 (9%)

Query: 20  CFIQMHGYRGCLETERTALLEIKRFFIAVRDTGYKDEILTSWVDDEMSDCCRWEQVKCVN 79
           CF  + G  G +  +   LLE+K+  +       +D+ L  W  D + + C W  V C N
Sbjct: 13  CFSGL-GQPGIINNDLQTLLEVKKSLVT---NPQEDDPLRQWNSDNI-NYCSWTGVTCDN 67

Query: 80  ATTRRVKELSLDGITL-GANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGS 138
               RV  L+L G+ L G+ S +     F  F  L  LDLS N+  G      +  ++ +
Sbjct: 68  TGLFRVIALNLTGLGLTGSISPW-----FGRFDNLIHLDLSSNNLVGP-----IPTALSN 117

Query: 139 LKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIP 181
           L  L+ L L+SN +   +   L +++++ +L +G   + G IP
Sbjct: 118 LTSLESLFLFSNQLTGEIPSQLGSLVNIRSLRIGDNELVGDIP 160

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q6XAT2|ERL2_ARATH LRR receptor-like serine/threonine-protein kinase ERL2 OS=Arabidopsis thaliana GN=ERL2 PE=2 SV=1

 Score = 47.8 bits (112), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 73/194 (37%), Gaps = 30/194 (15%)

Query: 7   LQVKRGLLAWVSICFIQMHGYRGCLETERTALLEIKRFFIAVRDTGYKDEILTSWVDDEM 66
           ++  +GL   + +    + G    +  E  AL+ IK  F  V +      +L  W D   
Sbjct: 4   IETMKGLFFCLGMVVFMLLGSVSPMNNEGKALMAIKASFSNVAN------MLLDWDDVHN 57

Query: 67  SDCCRWEQVKCVNATTRRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGV 126
            D C W  V C N +   V  L+L  + LG        S       L+S+DL  N   G 
Sbjct: 58  HDFCSWRGVFCDNVSLN-VVSLNLSNLNLGGEIS----SALGDLMNLQSIDLQGNKLGGQ 112

Query: 127 YEKE-------------------GMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLT 167
              E                    +  SI  LK L+ LNL +N +   +  +LT I +L 
Sbjct: 113 IPDEIGNCVSLAYVDFSTNLLFGDIPFSISKLKQLEFLNLKNNQLTGPIPATLTQIPNLK 172

Query: 168 NLSLGYCGIEGFIP 181
            L L    + G IP
Sbjct: 173 TLDLARNQLTGEIP 186

Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ERL1 and ER.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ9|Y4294_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g20940 OS=Arabidopsis thaliana GN=At4g20940 PE=1 SV=1

 Score = 47.0 bits (110), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 70/148 (47%), Gaps = 18/148 (12%)

Query: 37  ALLEIKRFFIAVRDTGYKDEILTSWVDD--EMSDC-CRWEQVKCVNATTRRVKELSLDGI 93
           ALLE K+  I    TG+   +L SW D+  + + C   W  + C       V  + LD +
Sbjct: 11  ALLEFKKG-IKHDPTGF---VLNSWNDESIDFNGCPSSWNGIVCNGGN---VAGVVLDNL 63

Query: 94  TLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVN 153
            L A++ F   S+F    +L  L +S NS  GV   +     +GS K L+ L+L  N  +
Sbjct: 64  GLTADADF---SLFSNLTKLVKLSMSNNSLSGVLPND-----LGSFKSLQFLDLSDNLFS 115

Query: 154 NSLLPSLTTIISLTNLSLGYCGIEGFIP 181
           +SL   +   +SL NLSL      G IP
Sbjct: 116 SSLPKEIGRSVSLRNLSLSGNNFSGEIP 143

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q42371|ERECT_ARATH LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1

 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 72/167 (43%), Gaps = 30/167 (17%)

Query: 34  ERTALLEIKRFFIAVRDTGYKDEILTSWVDDEMSDCCRWEQVKCVNATTRRV----KELS 89
           E   LLEIK+ F  V +      +L  W     SD C W  V C N T   V     +L+
Sbjct: 26  EGATLLEIKKSFKDVNN------VLYDWTTSPSSDYCVWRGVSCENVTFNVVALNLSDLN 79

Query: 90  LDG---ITLGANSGFLN-------LSMFLPFQ-----ELESLDLSYNSFYGVYEKEGMYL 134
           LDG     +G     L+       LS  +P +      L++LDLS+N   G      +  
Sbjct: 80  LDGEISPAIGDLKSLLSIDLRGNRLSGQIPDEIGDCSSLQNLDLSFNELSG-----DIPF 134

Query: 135 SIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIP 181
           SI  LK L+ L L +N +   +  +L+ I +L  L L    + G IP
Sbjct: 135 SISKLKQLEQLILKNNQLIGPIPSTLSQIPNLKILDLAQNKLSGEIP 181

Receptor kinase that, together with ERL1 and ERL2, regulates aerial architecture, including inflorescence (e.g. shoot apical meristem-originating organ shape, elongation of the internode and pedicels, and adaxial-abaxial polarity), and stomatal patterning (e.g. density and clustering), probably by tuning cell division and expansion. Modulates plant transpiration efficiency by controlling stomatal density, leaf photosynthetic capacity, epidermal cell expansion, mesophyll cell proliferation and cell-cell contact. Probable major trait regulating canalization (maintenance of phenotype despite varying environment) in many aspect of the plant physiology (e.g. plant morphology, light-dependent leaves number, branch number, flowering time, phytate and mineral concentrations) by transducing microenvironmental variation into phenotypic differentiation (ecological amplifier). May maintain development integrity in heat stress conditions. Regulates cell wall composition and structure. Confers resistance to the pathogenic bacteria Ralstonia solanacearum and to the necrotrophic fungi Plectosphaerella cucumerina and Pythium irregulare, and required for callose deposition upon infection. Resistance to P.cucumerina seems cell wall-mediated.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SD62|Y3471_ARATH Putative receptor-like protein kinase At3g47110 OS=Arabidopsis thaliana GN=At3g47110 PE=3 SV=1

 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/129 (36%), Positives = 64/129 (49%), Gaps = 22/129 (17%)

Query: 32  ETERTALLEIKRFFIAVRDTGYKDEILTSWVDDEMSDCCRWEQVKCVNATTRRVKELSLD 91
           ET++ ALLE K     V +T     +L SW D      C W  VKC     RRV  + L 
Sbjct: 38  ETDKQALLEFKS---QVSET--SRVVLGSWNDSL--PLCSWTGVKC-GLKHRRVTGVDLG 89

Query: 92  GITL-GANSGFL-NLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYS 149
           G+ L G  S F+ NLS       L SL+L+ N F+G    E     +G+L  L+ LN+ S
Sbjct: 90  GLKLTGVVSPFVGNLSF------LRSLNLADNFFHGAIPSE-----VGNLFRLQYLNM-S 137

Query: 150 NNVNNSLLP 158
           NN+   ++P
Sbjct: 138 NNLFGGVIP 146

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZVR7|PSKR1_ARATH Phytosulfokine receptor 1 OS=Arabidopsis thaliana GN=PSKR1 PE=2 SV=4

 Score = 44.7 bits (104), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 70/146 (47%), Gaps = 16/146 (10%)

Query: 39  LEIKRFFIAVRDTGYKDEILTSWVDDEMS-DCCRWEQVKCVNATTRRVKELSLDGITLGA 97
           LE  R FIA     + +     W++   S DCC W  + C +  T RV  L L    L  
Sbjct: 36  LEALRDFIA-----HLEPKPDGWINSSSSTDCCNWTGITCNSNNTGRVIRLELGNKKL-- 88

Query: 98  NSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLL 157
            SG L+ S+     E+  L+LS N     + K+ + LSI +LK L+ L+L SN+++   +
Sbjct: 89  -SGKLSESLG-KLDEIRVLNLSRN-----FIKDSIPLSIFNLKNLQTLDLSSNDLSGG-I 140

Query: 158 PSLTTIISLTNLSLGYCGIEGFIPNQ 183
           P+   + +L +  L      G +P+ 
Sbjct: 141 PTSINLPALQSFDLSSNKFNGSLPSH 166

Phytosulfokine receptor with a serine/threonine-protein kinase activity. Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis, somatic embryogenesis, cellular proliferation and plant growth. Not involved in PSY perception.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q05091|PGIP_PYRCO Polygalacturonase inhibitor OS=Pyrus communis GN=PGIP PE=1 SV=1

 Score = 44.3 bits (103), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 75/155 (48%), Gaps = 22/155 (14%)

Query: 30  CLETERTALLEIKRFFIAVRDTGYKDEILTSWVDDEMSDCCRWEQVKCVNATTRRVKELS 89
           C   ++  LL+IK+ F           +L SW  D  +DCC W  V C ++TT R+  L+
Sbjct: 27  CNPDDKKVLLQIKKAF-------GDPYVLASWKSD--TDCCDWYCVTC-DSTTNRINSLT 76

Query: 90  LDGITLGANSGFLN-LSMFLPFQELESLDLSYNSFYGVYEKEG-MYLSIGSLKWLKILNL 147
              I  G  SG +  L   LP+  LE+L+     F+      G +  +I  LK LK L L
Sbjct: 77  ---IFAGQVSGQIPALVGDLPY--LETLE-----FHKQPNLTGPIQPAIAKLKGLKSLRL 126

Query: 148 YSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPN 182
              N++ S+   L+ + +LT L L +  + G IP+
Sbjct: 127 SWTNLSGSVPDFLSQLKNLTFLDLSFNNLTGAIPS 161

Inhibitor of fungal polygalacturonase. It is an important factor for plant resistance to phytopathogenic fungi.

Pyrus communis (taxid: 23211)

>sp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1

 Score = 43.5 bits (101), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 80/208 (38%), Gaps = 61/208 (29%)

Query: 21  FIQMHGYRGCLETERTALLEIKRFFIAVRDTGYKDEILTSWVDDEMSDCCRWEQVKCVNA 80
            ++ HG+    ET+R ALL+ K      + +  K  +L+SW  +     C W+ V C   
Sbjct: 14  LLETHGFTD--ETDRQALLQFKS-----QVSEDKRVVLSSW--NHSFPLCNWKGVTC-GR 63

Query: 81  TTRRVKELSLDGITLGA--NSGFLNLSMFLPFQELESLDLSYNSFYGVYEKE-------- 130
             +RV  L L  + LG   +    NLS  +      SLDL  N F G   +E        
Sbjct: 64  KNKRVTHLELGRLQLGGVISPSIGNLSFLV------SLDLYENFFGGTIPQEVGQLSRLE 117

Query: 131 ---------------GMY--------------------LSIGSLKWLKILNLYSNNVNNS 155
                          G+Y                      +GSL  L  LNLY NN+   
Sbjct: 118 YLDMGINYLRGPIPLGLYNCSRLLNLRLDSNRLGGSVPSELGSLTNLVQLNLYGNNMRGK 177

Query: 156 LLPSLTTIISLTNLSLGYCGIEGFIPNQ 183
           L  SL  +  L  L+L +  +EG IP+ 
Sbjct: 178 LPTSLGNLTLLEQLALSHNNLEGEIPSD 205

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	187
359483099	1231	PREDICTED: probable LRR receptor-like se	0.887	0.134	0.429	1e-26
297745031	869	unnamed protein product [Vitis vinifera]	0.850	0.182	0.428	3e-26
359482749	1067	PREDICTED: leucine-rich repeat receptor	0.887	0.155	0.423	1e-25
10177158	888	disease resistance protein-like [Arabido	0.839	0.176	0.421	4e-25
240256417	908	receptor like protein 56 [Arabidopsis th	0.839	0.172	0.421	4e-25
297821945	910	leucine-rich repeat family protein [Arab	0.855	0.175	0.401	2e-24
4432858	910	putative disease resistance protein [Ara	0.855	0.175	0.413	2e-24
240254535	935	receptor like protein 21 [Arabidopsis th	0.855	0.171	0.413	2e-24
358345693	1011	Receptor-like protein kinase [Medicago t	0.860	0.159	0.428	4e-24
357468861	1016	Receptor-like protein kinase [Medicago t	0.860	0.158	0.428	4e-24

>gi|359483099|ref|XP_002262931.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Vitis vinifera]

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/184 (42%), Positives = 108/184 (58%), Gaps = 18/184 (9%)

Query: 14  LAWVSICF-IQMHGYRGCLETERTALLEIKRFFIAVRDTGYKDEILTSWVDDEMSDCCRW 72
           L WV I   +Q+ G +GC+E E+  LLE K F + + D G+ D +L SW+D+ +SDCC W
Sbjct: 9   LMWVFILLLVQICGCKGCIEEEKMGLLEFKAF-LKLND-GHADFLLPSWIDNNISDCCNW 66

Query: 73  EQVKCVNATTRRVKELSLDGITLGANS-------------GFLNLSMFLPFQELESLDLS 119
           E+V C N TT RVK+LSL+ I    N                LN+S+FLPF+EL  L+LS
Sbjct: 67  ERVIC-NPTTGRVKKLSLNDIRQQQNMLEVNWYYYENVKFWLLNVSLFLPFEELHHLNLS 125

Query: 120 YNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGF 179
            NSF G  E EG +  + SLK L+IL++  N  + S L SL  I SL  L++   G++G 
Sbjct: 126 ANSFDGFIENEG-FKGLSSLKKLEILDISGNEFDKSALKSLGAITSLKTLAIRSMGLDGS 184

Query: 180 IPNQ 183
            P Q
Sbjct: 185 FPIQ 188

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745031|emb|CBI38623.3| unnamed protein product [Vitis vinifera]

 Score =  123 bits (309), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 75/175 (42%), Positives = 101/175 (57%), Gaps = 16/175 (9%)

Query: 16  WVSICFIQMHGYRGCLETERTALLEIKRFFIAVRDTGYKDEILTSWVDDEMSDCCRWEQV 75
           W  +  IQ+HGY+ CLE ER  LLE KRF  +  +    D +L SWV+DE SDCC WE+V
Sbjct: 11  WALMILIQIHGYKCCLEKERMGLLEFKRFLRSNNEDA--DRLLPSWVNDEESDCCYWERV 68

Query: 76  KCVNATTRRVKELSLD------------GITLGANSGFLNLSMFLPFQELESLDLSYNSF 123
            C N+TT  V +LSL+            G+     + FLN+S+F PF+EL SLDLS N F
Sbjct: 69  VC-NSTTGTVTQLSLNNIRQIEFYHRVYGLAPPKKTWFLNVSLFHPFEELVSLDLSENWF 127

Query: 124 YGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEG 178
               E +G +  +  LK L++LN+  N  NNS+ PS+  + SL  L L    +EG
Sbjct: 128 ADSLEDQG-FEKLKGLKKLEMLNIGQNYFNNSIFPSVGALTSLRVLILRETKLEG 181

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482749|ref|XP_002262614.2| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera]

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/182 (42%), Positives = 105/182 (57%), Gaps = 16/182 (8%)

Query: 14  LAWVSICF-IQMHGYRGCLETERTALLEIKRFFIAVRDTGYKDEILTSWVDDEMSDCCRW 72
           L WV I   +Q+ G +GC+E E+  LLE K F     +  + D +L SW+D+  S+CC W
Sbjct: 9   LMWVFILLLVQICGCKGCIEEEKMGLLEFKAFLKL--NNEHADFLLPSWIDNNTSECCNW 66

Query: 73  EQVKCVNATTRRVKELSLDGITLGA---------NSGF--LNLSMFLPFQELESLDLSYN 121
           E+V C N TT RVK+L  + IT            N  F  LN+S+FLPF+EL  L+LS N
Sbjct: 67  ERVIC-NPTTGRVKKLFFNDITRQHLEDNWYYYENVKFWLLNVSLFLPFEELHHLNLSAN 125

Query: 122 SFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIP 181
           SF G  E EG + S+  LK L+ILNL  N  N +++  L+ + SL  L + Y  IEG  P
Sbjct: 126 SFDGFIENEG-FKSLSKLKKLEILNLRDNQFNKTIIKQLSGLTSLKTLVVSYNYIEGLFP 184

Query: 182 NQ 183
           +Q
Sbjct: 185 SQ 186

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|10177158|dbj|BAB10347.1| disease resistance protein-like [Arabidopsis thaliana]

 Score =  119 bits (299), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 67/159 (42%), Positives = 94/159 (59%), Gaps = 2/159 (1%)

Query: 23  QMHGYRGCLETERTALLEIKRFFIAVRDTGYKDEILTSWVDDEMSDCCRWEQVKCVNATT 82
            +HG+  C+E ER ALLE+K+F ++  +    D +L +W +D  SDCC+WE +KC N T+
Sbjct: 6   HLHGFSSCIEKERKALLELKKFVMSRCEECEYDSVLPTWTNDTKSDCCQWENIKC-NRTS 64

Query: 83  RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWL 142
           RR+  LSL   +       LNLS+  PF+E+ SLDLS +   G+ +    Y S+  L+ L
Sbjct: 65  RRLTGLSL-YTSYYLEISLLNLSLLHPFEEVRSLDLSNSRLNGLVDDVEGYKSLRRLRNL 123

Query: 143 KILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIP 181
           +ILN  SN  NNS+ P L    SLT LSL    + G IP
Sbjct: 124 QILNFSSNEFNNSIFPFLNAATSLTTLSLRRNNMYGPIP 162

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240256417|ref|NP_199740.4| receptor like protein 56 [Arabidopsis thaliana] gi|332008410|gb|AED95793.1| receptor like protein 56 [Arabidopsis thaliana]

 Score =  119 bits (299), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 67/159 (42%), Positives = 94/159 (59%), Gaps = 2/159 (1%)

Query: 23  QMHGYRGCLETERTALLEIKRFFIAVRDTGYKDEILTSWVDDEMSDCCRWEQVKCVNATT 82
            +HG+  C+E ER ALLE+K+F ++  +    D +L +W +D  SDCC+WE +KC N T+
Sbjct: 6   HLHGFSSCIEKERKALLELKKFVMSRCEECEYDSVLPTWTNDTKSDCCQWENIKC-NRTS 64

Query: 83  RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWL 142
           RR+  LSL   +       LNLS+  PF+E+ SLDLS +   G+ +    Y S+  L+ L
Sbjct: 65  RRLTGLSL-YTSYYLEISLLNLSLLHPFEEVRSLDLSNSRLNGLVDDVEGYKSLRRLRNL 123

Query: 143 KILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIP 181
           +ILN  SN  NNS+ P L    SLT LSL    + G IP
Sbjct: 124 QILNFSSNEFNNSIFPFLNAATSLTTLSLRRNNMYGPIP 162

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297821945|ref|XP_002878855.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297324694|gb|EFH55114.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/167 (40%), Positives = 105/167 (62%), Gaps = 7/167 (4%)

Query: 23  QMHGYRGCLETERTALLEIKRFFIA-VRDTGYKDEILTSWVDDEMSDCCRWEQVKCVNAT 81
           Q+HG +GC+  ER ALLE+K++ ++  R++G  D +L +W +D  SDCC+W+ +KC N T
Sbjct: 6   QLHGCKGCIMKEREALLELKKYLMSRSRESGL-DYVLPTWTNDTKSDCCQWDGIKC-NRT 63

Query: 82  TRRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLS---YNSFYGVYEKEGMYLSIGS 138
           +RRV  LS+  +    +S  LNLS+  PF+E+ SL+LS   YN F G ++    Y S+  
Sbjct: 64  SRRVIGLSVGDMYFKESSP-LNLSLLHPFEEVRSLNLSTEGYNEFNGFFDDVEGYRSLSR 122

Query: 139 LKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPNQGM 185
           L+ L+I++L +N  N S+ P L    SLT + L Y  ++G  P +G+
Sbjct: 123 LRNLQIMDLSTNYFNYSIFPFLNAATSLTTIFLTYNEMDGPFPIKGL 169

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4432858|gb|AAD20706.1| putative disease resistance protein [Arabidopsis thaliana]

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 7/167 (4%)

Query: 23  QMHGYRGCLETERTALLEIKRFFIA-VRDTGYKDEILTSWVDDEMSDCCRWEQVKCVNAT 81
           Q+HG   C+E ER ALLE+K++ ++  R++G  D +L +W +D  SDCC+W+ +KC N T
Sbjct: 6   QLHGCTSCIEKEREALLELKKYLMSRSRESGL-DYVLPTWTNDTKSDCCQWDGIKC-NRT 63

Query: 82  TRRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLS---YNSFYGVYEKEGMYLSIGS 138
           + RV ELS+  +    +S  LNLS+  PF+E+ SL+LS   YN F G ++    Y S+  
Sbjct: 64  SGRVIELSVGDMYFKESSP-LNLSLLHPFEEVRSLNLSTEGYNEFNGFFDDVEGYRSLSG 122

Query: 139 LKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPNQGM 185
           L+ LKI++L +N  N S  P L    SLT L L Y  ++G  P +G+
Sbjct: 123 LRNLKIMDLSTNYFNYSTFPFLNAATSLTTLILTYNEMDGPFPIKGL 169

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240254535|ref|NP_180117.4| receptor like protein 21 [Arabidopsis thaliana] gi|330252611|gb|AEC07705.1| receptor like protein 21 [Arabidopsis thaliana]

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 7/167 (4%)

Query: 23  QMHGYRGCLETERTALLEIKRFFIA-VRDTGYKDEILTSWVDDEMSDCCRWEQVKCVNAT 81
           Q+HG   C+E ER ALLE+K++ ++  R++G  D +L +W +D  SDCC+W+ +KC N T
Sbjct: 6   QLHGCTSCIEKEREALLELKKYLMSRSRESGL-DYVLPTWTNDTKSDCCQWDGIKC-NRT 63

Query: 82  TRRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLS---YNSFYGVYEKEGMYLSIGS 138
           + RV ELS+  +    +S  LNLS+  PF+E+ SL+LS   YN F G ++    Y S+  
Sbjct: 64  SGRVIELSVGDMYFKESSP-LNLSLLHPFEEVRSLNLSTEGYNEFNGFFDDVEGYRSLSG 122

Query: 139 LKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPNQGM 185
           L+ LKI++L +N  N S  P L    SLT L L Y  ++G  P +G+
Sbjct: 123 LRNLKIMDLSTNYFNYSTFPFLNAATSLTTLILTYNEMDGPFPIKGL 169

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358345693|ref|XP_003636910.1| Receptor-like protein kinase [Medicago truncatula] gi|355502845|gb|AES84048.1| Receptor-like protein kinase [Medicago truncatula]

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 72/168 (42%), Positives = 97/168 (57%), Gaps = 7/168 (4%)

Query: 13  LLAWVSICFIQMHGYRGCLETERTALLEIKRFFIAVRDTGYKDEILTSWVDDEMSDCCRW 72
           LL +V++  +   G  GCLE ER +LLEIK +F++   TG     L SWVDD  S+CC W
Sbjct: 10  LLYFVTLMLMLTQGCNGCLEKERISLLEIKHYFLS--QTGDPYNKLGSWVDDRDSNCCSW 67

Query: 73  EQVKCVNATTRRVKELSLDGITLGANSGF-LNLSMFLPFQELESLDLSYNSFYGVYEKEG 131
             VKC N ++  + ELS+  +         LN+S+F PF+EL  LDLSYNSF G    EG
Sbjct: 68  NNVKCSNISSGHIIELSIRKLLFDIPFDMKLNVSLFRPFKELRLLDLSYNSFLGWIGNEG 127

Query: 132 MYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGF 179
                  LK L+ L+L  N +N+S+LPSL  + +LT L L    +E F
Sbjct: 128 ----FPRLKRLETLDLSGNYLNSSILPSLKGLTALTTLKLVSNSMENF 171

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357468861|ref|XP_003604715.1| Receptor-like protein kinase [Medicago truncatula] gi|355505770|gb|AES86912.1| Receptor-like protein kinase [Medicago truncatula]

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 72/168 (42%), Positives = 97/168 (57%), Gaps = 7/168 (4%)

Query: 13  LLAWVSICFIQMHGYRGCLETERTALLEIKRFFIAVRDTGYKDEILTSWVDDEMSDCCRW 72
           LL +V++  +   G  GCLE ER +LLEIK +F++   TG     L SWVDD  S+CC W
Sbjct: 10  LLYFVTLMLMLTQGCNGCLEKERISLLEIKHYFLS--QTGDPYNKLGSWVDDRDSNCCSW 67

Query: 73  EQVKCVNATTRRVKELSLDGITLGANSGF-LNLSMFLPFQELESLDLSYNSFYGVYEKEG 131
             VKC N ++  + ELS+  +         LN+S+F PF+EL  LDLSYNSF G    EG
Sbjct: 68  NNVKCSNISSGHIIELSIRKLLFDIPFDMKLNVSLFRPFKELRLLDLSYNSFLGWIGNEG 127

Query: 132 MYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGF 179
                  LK L+ L+L  N +N+S+LPSL  + +LT L L    +E F
Sbjct: 128 ----FPRLKRLETLDLSGNYLNSSILPSLKGLTALTTLKLVSNSMENF 171

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	187
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.684	0.131	0.444	1.2e-22
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.636	0.127	0.428	1.5e-19
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.673	0.130	0.374	1.5e-19
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.636	0.131	0.404	3.4e-18
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.540	0.093	0.366	3.2e-09
TAIR|locus:2119535	725	RLP48 "receptor like protein 4	0.556	0.143	0.362	5.9e-08
TAIR|locus:2096349	860	RLP31 "receptor like protein 3	0.497	0.108	0.38	1.1e-06
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.395	0.083	0.389	1.5e-06
TAIR|locus:2119445	719	AT4G13820 [Arabidopsis thalian	0.561	0.146	0.322	3.9e-06
TAIR|locus:2078102	875	RLP33 "receptor like protein 3	0.561	0.12	0.370	1.6e-05

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 274 (101.5 bits), Expect = 1.2e-22, P = 1.2e-22
 Identities = 60/135 (44%), Positives = 86/135 (63%)

Query:    14 LAWVSICFIQMHGYRGCLETERTALLEIKRFFIA-VRDTGYKDEILTSWVDDEMSDCCRW 72
             L WV +  +Q+ GY+ C+E ER ALLE+K++ I+   D G  D +L +W +D  S+CCRW
Sbjct:    11 LIWVMLLLVQLRGYKCCIEKERKALLELKKYMISKTADWGL-DSVLPTWTNDTKSNCCRW 69

Query:    73 EQVKCVNATTRRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLS---YNSFYGVYEK 129
             E +KC N T+ R+ ELS+ G T    S  LNLS+  PF+EL SL+LS   YN F G+++ 
Sbjct:    70 EGLKC-NQTSGRIIELSI-GQTNFKESSLLNLSLLHPFEELRSLNLSGEIYNEFNGLFDD 127

Query:   130 EGMYLSIGSLKWLKI 144
                Y S+  L+ L+I
Sbjct:   128 VEGYESLRRLRNLEI 142

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 245 (91.3 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 54/126 (42%), Positives = 81/126 (64%)

Query:    23 QMHGYRGCLETERTALLEIKRFFIA-VRDTGYKDEILTSWVDDEMSDCCRWEQVKCVNAT 81
             Q+HG   C+E ER ALLE+K++ ++  R++G  D +L +W +D  SDCC+W+ +KC N T
Sbjct:     6 QLHGCTSCIEKEREALLELKKYLMSRSRESGL-DYVLPTWTNDTKSDCCQWDGIKC-NRT 63

Query:    82 TRRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLS---YNSFYGVYEKEGMYLSIGS 138
             + RV ELS+  +    +S  LNLS+  PF+E+ SL+LS   YN F G ++    Y S+  
Sbjct:    64 SGRVIELSVGDMYFKESSP-LNLSLLHPFEEVRSLNLSTEGYNEFNGFFDDVEGYRSLSG 122

Query:   139 LKWLKI 144
             L+ LKI
Sbjct:   123 LRNLKI 128

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 245 (91.3 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 49/131 (37%), Positives = 82/131 (62%)

Query:    14 LAWVSICFIQMHGYRGCLETERTALLEIKRFFIAVRDTGYKDEILTSWVDDEMSDCCRWE 73
             L WV +   Q+HGY+ C++ E+ AL E+++  I+  ++   + +L +W +D  SDCCRW+
Sbjct:    11 LIWVMLLMGQLHGYKSCIDEEKIALFELRKHMISRTES---ESVLPTWTNDTTSDCCRWK 67

Query:    74 QVKCVNATTRRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMY 133
              V C N  + RV E+S  G++L  NS  LNLS+  PF+++ SL+LS +   G+++    Y
Sbjct:    68 GVAC-NRVSGRVTEISFGGLSLKDNS-LLNLSLLHPFEDVRSLNLSSSRCSGLFDDVEGY 125

Query:   134 LSIGSLKWLKI 144
              S+  L+ L+I
Sbjct:   126 KSLRKLRKLEI 136

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 232 (86.7 bits), Expect = 3.4e-18, P = 3.4e-18
 Identities = 49/121 (40%), Positives = 74/121 (61%)

Query:    24 MHGYRGCLETERTALLEIKRFFIAVRDTGYKDEILTSWVDDEMSDCCRWEQVKCVNATTR 83
             +HG+  C+E ER ALLE+K+F ++  +    D +L +W +D  SDCC+WE +KC N T+R
Sbjct:     7 LHGFSSCIEKERKALLELKKFVMSRCEECEYDSVLPTWTNDTKSDCCQWENIKC-NRTSR 65

Query:    84 RVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLK 143
             R+  LSL   +       LNLS+  PF+E+ SLDLS +   G+ +    Y S+  L+ L+
Sbjct:    66 RLTGLSLY-TSYYLEISLLNLSLLHPFEEVRSLDLSNSRLNGLVDDVEGYKSLRRLRNLQ 124

Query:   144 I 144
             I
Sbjct:   125 I 125

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 3.2e-09, P = 3.2e-09
 Identities = 40/109 (36%), Positives = 60/109 (55%)

Query:    38 LLEIKRFFIAVRDTGYKDE----ILTSWVDDEMSDCCRWEQVKCVNATTRRVKELSLDG- 92
             LL++K +   + D   ++E    IL SW   E  DCCRWE+VKC +A    V  LSLD  
Sbjct:     3 LLQLKSYLKNLVDAEEEEEEGLSILKSWTHHE-GDCCRWERVKCSDAINGHVIGLSLDRL 61

Query:    93 --ITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSL 139
               +   + +  LNLS+   F +L+SL+LS+N F  + +    + S G+L
Sbjct:    62 VPVAFESQTRSLNLSLLHSFPQLQSLNLSWNWFTNLSDHFLGFKSFGTL 110

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2119535 RLP48 "receptor like protein 48" [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 5.9e-08, P = 5.9e-08
 Identities = 42/116 (36%), Positives = 59/116 (50%)

Query:    30 CLETERTALLEIKR-FFIAVRDTGYKDEILT-SWVDDEMSDCCRWEQVKCVNATTRRVKE 87
             CL  +R ALLE K  F++   D   K E  T +W +   +DCC W +V C +  T +V E
Sbjct:    34 CLPDQRDALLEFKNEFYVQEFDPHMKCEKATETWRNK--TDCCSWNRVSC-DPKTGKVVE 90

Query:    88 LSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLK 143
             L L    L  N    + S     Q L+SL+LS N+  G+        SIG+LK+L+
Sbjct:    91 LDLMSSCL--NGPLRSNSSLFRLQHLQSLELSSNNISGILPD-----SIGNLKYLR 139

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2096349 RLP31 "receptor like protein 31" [Arabidopsis thaliana (taxid:3702)]

 Score = 124 (48.7 bits), Expect = 1.1e-06, P = 1.1e-06
 Identities = 38/100 (38%), Positives = 50/100 (50%)

Query:    28 RGCLETERTALLEIKRFFIAVRDTGY--KDEILTSWVDDEMSDCCRWEQVKCVNATTRRV 85
             R C   +R ALLE K  F  V ++     D  L+SW  ++  DCC WE V C +A +  V
Sbjct:    28 RHCRHDQRNALLEFKHEFPRVNESNQIPYDVSLSSW--NKSIDCCSWEGVTC-DAISSEV 84

Query:    86 KELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYG 125
               L+L  + L  NS   N  +F   Q L +L LS  S YG
Sbjct:    85 ISLNLSHVPLN-NSLKPNSGLF-KLQHLHNLTLSNCSLYG 122

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 1.5e-06, P = 1.5e-06
 Identities = 30/77 (38%), Positives = 46/77 (59%)

Query:    69 CCRWEQVKCVNATTRRVK--ELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGV 126
             CC W ++KC + T++RV    LSL+ I        LNL+ F PF+EL+SL+LS   F G 
Sbjct:     7 CCHWRRIKC-DITSKRVIGISLSLESIRPPDPLPQLNLTFFYPFEELQSLNLSSGYFKGW 65

Query:   127 YEKEGMYLSIGSLKWLK 143
             +++      +GSL+ L+
Sbjct:    66 FDERKGGKGLGSLRNLE 82

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2119445 AT4G13820 [Arabidopsis thaliana (taxid:3702)]

 Score = 118 (46.6 bits), Expect = 3.9e-06, P = 3.9e-06
 Identities = 38/118 (32%), Positives = 59/118 (50%)

Query:    30 CLETERTALLEIKR-FFI-AVRDTGYKDEILTS-WVDDEMSDCCRWEQVKCVNATTRRVK 86
             C + ++ ALLE K  F++      G      T  W ++  +DCC W+ + C +  T +V 
Sbjct:    29 CRQDQKNALLEFKNEFYVHEFNSNGIVGVKKTEKWRNN--TDCCSWDGISC-DPKTGKVV 85

Query:    87 ELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKI 144
             EL L    L     + + S+F   Q L +LDL  N+F G+        SIGSLK+L++
Sbjct:    86 ELDLMNSFLNGPLRY-DSSLFR-LQHLHNLDLGSNNFSGILPD-----SIGSLKYLRV 136

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000303 "response to superoxide" evidence=RCA

GO:0008219 "cell death" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

TAIR|locus:2078102 RLP33 "receptor like protein 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 116 (45.9 bits), Expect = 1.6e-05, P = 1.6e-05
 Identities = 43/116 (37%), Positives = 53/116 (45%)

Query:    30 CLETERTALLEIKRFFIAVRDT-GYKDEILT-SWVDDEMSDCCRWEQVKCVNATTRRVKE 87
             C   +R ALLE K  F   +   G    + T SW  +  SDCC W+ + C +A T  V E
Sbjct:    30 CHFEQRDALLEFKNEFKIKKPCFGCPSPLKTKSW--ENGSDCCHWDGITC-DAKTGEVIE 86

Query:    88 LSLDGITL-GANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWL 142
             + L    L G      NLSM   F  L +LDLSYN   G         SIG+L  L
Sbjct:    87 IDLMCSCLHGWFHSNSNLSMLQNFHFLTTLDLSYNHLSGQISS-----SIGNLSHL 137

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006457 "protein folding" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00030803001 SubName- Full=Chromosome undetermined scaffold_52, whole genome shotgun sequence; (268 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	187
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-04
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	2e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.001
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.004

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 42.1 bits (99), Expect = 7e-05
 Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 12/72 (16%)

Query: 113 LESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSL------TTIISL 166
           LE LDLSYNSF G   +     S+G L  L+ILNL  N+++  +  +L          + 
Sbjct: 468 LEVLDLSYNSFNGSIPE-----SLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNF 522

Query: 167 TNLSLGYCGIEG 178
           T+ + G CGI G
Sbjct: 523 TD-NAGLCGIPG 533

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 22/118 (18%)

Query: 72  WEQVKC-VNATTRR--VKELSLDGITLGANSGFLNLSMFLP-----FQELESLDLSYNSF 123
           W    C  ++T  +  +  L LD      N G   L  F+P      + L+S++LS NS 
Sbjct: 404 WSGADCQFDSTKGKWFIDGLGLD------NQG---LRGFIPNDISKLRHLQSINLSGNSI 454

Query: 124 YGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIP 181
            G      +  S+GS+  L++L+L  N+ N S+  SL  + SL  L+L    + G +P
Sbjct: 455 RG-----NIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 37.3 bits (87), Expect = 2e-04
 Identities = 16/47 (34%), Positives = 18/47 (38%), Gaps = 6/47 (12%)

Query: 31 LETERTALLEIKRFFIAVRDTGYKDEILTSWVDDEMSDCCRWEQVKC 77
          L  +R ALL  K         G     L+SW     SD C W  V C
Sbjct: 1  LNDDRDALLAFKSSL-----NGDPSGALSSWNPSS-SDPCSWTGVTC 41

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 39.8 bits (93), Expect = 5e-04
 Identities = 47/171 (27%), Positives = 68/171 (39%), Gaps = 56/171 (32%)

Query: 58  LTSWVDDEMSDCCRWEQVKCVNATTRRVKELSLDG-------------------ITLGAN 98
           L++W  +  +D C W+ + C N++  RV  + L G                   I L  N
Sbjct: 48  LSNW--NSSADVCLWQGITCNNSS--RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNN 103

Query: 99  --SG--------------FLNLSM----------FLPFQELESLDLSYNSFYGVYEKEGM 132
             SG              +LNLS            +P   LE+LDLS N   G      +
Sbjct: 104 QLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPN--LETLDLSNNMLSG-----EI 156

Query: 133 YLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPNQ 183
              IGS   LK+L+L  N +   +  SLT + SL  L+L    + G IP +
Sbjct: 157 PNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE 207

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 38.3 bits (89), Expect = 0.001
 Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 5/103 (4%)

Query: 79  NATTRRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGS 138
              +R+    SL  ++L  N  F  L      + LE+LDLS N F G      +   +GS
Sbjct: 443 RINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGA-----VPRKLGS 497

Query: 139 LKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIP 181
           L  L  L L  N ++  +   L++   L +L L +  + G IP
Sbjct: 498 LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIP 540

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 37.1 bits (86), Expect = 0.004
 Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 14/98 (14%)

Query: 89  SLDGITLGANSGFLNLSMFLPFQ-----ELESLDLSYNSFYGVYEKEGMYLSIGSLKWLK 143
           SL  I LG N    NLS  +P++      L  LDL YN+  G      +  S+G+LK L+
Sbjct: 213 SLKWIYLGYN----NLSGEIPYEIGGLTSLNHLDLVYNNLTG-----PIPSSLGNLKNLQ 263

Query: 144 ILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIP 181
            L LY N ++  + PS+ ++  L +L L    + G IP
Sbjct: 264 YLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP 301

Length = 968

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	187
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.81
PLN03150	623	hypothetical protein; Provisional	99.79
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.29
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.02
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	99.0
PLN03150	623	hypothetical protein; Provisional	98.98
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.93
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.66
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.65
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.55
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.54
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.53
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.52
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.37
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.36
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.34
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.31
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.31
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.28
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.28
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.26
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.18
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.13
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.08
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.06
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.03
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.94
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.9
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.88
KOG4237	498	consensus Extracellular matrix protein slit, conta	97.85
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.83
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	97.83
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.76
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.76
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.53
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.5
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.46
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.44
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.31
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.3
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.24
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.08
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.96
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	96.96
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.92
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.86
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	96.7
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	96.68
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.52
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.27
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.09
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.83
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.54
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	95.32
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	95.13
smart00370	26	LRR Leucine-rich repeats, outliers.	95.13
KOG0473	326	consensus Leucine-rich repeat protein [Function un	95.1
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	95.06
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	95.02
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	95.02
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.4
smart00370	26	LRR Leucine-rich repeats, outliers.	94.13
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.13
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	93.73
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	93.55
KOG2982	418	consensus Uncharacterized conserved protein [Funct	92.29
PRK15386	426	type III secretion protein GogB; Provisional	92.29
KOG2123	388	consensus Uncharacterized conserved protein [Funct	92.28
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	91.76
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	91.19
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	90.72
PRK15386	426	type III secretion protein GogB; Provisional	88.65
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	87.5
KOG0473	326	consensus Leucine-rich repeat protein [Function un	87.4
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	86.68
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	85.97
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	85.71
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	83.0

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.81  E-value=3.6e-19  Score=165.38  Aligned_cols=142  Identities=29%  Similarity=0.431  Sum_probs=87.5

Q ss_pred             cHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCEEEEEcCCCCCCCCCC----------
Q 036330           31 LETERTALLEIKRFFIAVRDTGYKDEILTSWVDDEMSDCCRWEQVKCVNATTRRVKELSLDGITLGANSG----------  100 (187)
Q Consensus        31 ~~~~~~~Ll~~k~~~~~~~p~~~~~~~l~~W~~~~~~~~C~w~gv~C~~~~~~~v~~L~L~~~~l~~~~~----------  100 (187)
                      .++|+.+|++||+++.  +|    ...+.+|+..  .++|.|.||.|+.  .++|+.|+|+++++++...          
T Consensus        27 ~~~~~~~l~~~~~~~~--~~----~~~~~~w~~~--~~~c~w~gv~c~~--~~~v~~L~L~~~~i~~~~~~~~~~l~~L~   96 (968)
T PLN00113         27 HAEELELLLSFKSSIN--DP----LKYLSNWNSS--ADVCLWQGITCNN--SSRVVSIDLSGKNISGKISSAIFRLPYIQ   96 (968)
T ss_pred             CHHHHHHHHHHHHhCC--CC----cccCCCCCCC--CCCCcCcceecCC--CCcEEEEEecCCCccccCChHHhCCCCCC
Confidence            5689999999999986  45    3457899765  7899999999986  4689999999988743211          


Q ss_pred             -----------CCCCccCcCCCCCcEEEccCCccccccCCC-----------------ccccccCCCCCCCEEEccCCCC
Q 036330          101 -----------FLNLSMFLPFQELESLDLSYNSFYGVYEKE-----------------GMYLSIGSLKWLKILNLYSNNV  152 (187)
Q Consensus       101 -----------~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~-----------------~~~~~~~~l~~L~~L~Ls~N~l  152 (187)
                                 .++...+..+++|++|+|++|.++|.+|..                 ..|..++.+++|++|+|++|.+
T Consensus        97 ~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l  176 (968)
T PLN00113         97 TINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVL  176 (968)
T ss_pred             EEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcc
Confidence                       011111223444555555555444444310                 0123455555566666666655


Q ss_pred             CCCChHHhhcCCCCCEEEcccccccccCCC
Q 036330          153 NNSLLPSLTTIISLTNLSLGYCGIEGFIPN  182 (187)
Q Consensus       153 ~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~  182 (187)
                      .+.+|..++++++|++|+|++|+++|.+|.
T Consensus       177 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~  206 (968)
T PLN00113        177 VGKIPNSLTNLTSLEFLTLASNQLVGQIPR  206 (968)
T ss_pred             cccCChhhhhCcCCCeeeccCCCCcCcCCh
Confidence            555565555666666666666666555553

>PLN03150 hypothetical protein; Provisional

Probab=99.79  E-value=7.4e-19  Score=156.73  Aligned_cols=135  Identities=30%  Similarity=0.410  Sum_probs=113.1

Q ss_pred             CCCcHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCCCCC-----CCcceeecCC-CC--CCEEEEEcCCCCCCCCC
Q 036330           28 RGCLETERTALLEIKRFFIAVRDTGYKDEILTSWVDDEMSDCC-----RWEQVKCVNA-TT--RRVKELSLDGITLGANS   99 (187)
Q Consensus        28 ~~~~~~~~~~Ll~~k~~~~~~~p~~~~~~~l~~W~~~~~~~~C-----~w~gv~C~~~-~~--~~v~~L~L~~~~l~~~~   99 (187)
                      ..+.++|.++|+++|+.+.  ++.      ..+|+.    ++|     .|.||.|... ..  .+|+.|+|+++++.   
T Consensus       367 ~~t~~~~~~aL~~~k~~~~--~~~------~~~W~g----~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~---  431 (623)
T PLN03150        367 SKTLLEEVSALQTLKSSLG--LPL------RFGWNG----DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLR---  431 (623)
T ss_pred             cccCchHHHHHHHHHHhcC--Ccc------cCCCCC----CCCCCcccccccceeeccCCCCceEEEEEECCCCCcc---
Confidence            3456789999999999986  231      247963    455     6999999531 11  25999999999994   


Q ss_pred             CCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEccccccccc
Q 036330          100 GFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGF  179 (187)
Q Consensus       100 ~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~  179 (187)
                      +.++ ..+..+++|+.|+|++|.++|.+|     ..++.+++|+.|+|++|+++|.+|+.++++++|+.|+|++|+|+|.
T Consensus       432 g~ip-~~i~~L~~L~~L~Ls~N~l~g~iP-----~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~  505 (623)
T PLN03150        432 GFIP-NDISKLRHLQSINLSGNSIRGNIP-----PSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGR  505 (623)
T ss_pred             ccCC-HHHhCCCCCCEEECCCCcccCcCC-----hHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCccccc
Confidence            3333 347889999999999999999999     8999999999999999999999999999999999999999999999


Q ss_pred             CCCC
Q 036330          180 IPNQ  183 (187)
Q Consensus       180 iP~~  183 (187)
                      +|..
T Consensus       506 iP~~  509 (623)
T PLN03150        506 VPAA  509 (623)
T ss_pred             CChH
Confidence            9975

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.29  E-value=3.9e-12  Score=118.56  Aligned_cols=75  Identities=27%  Similarity=0.406  Sum_probs=62.0

Q ss_pred             CcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccccCCCCCCC
Q 036330          107 FLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPNQGMF  186 (187)
Q Consensus       107 l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~~~~  186 (187)
                      +..+++|++|++++|.++|.+|     ..+..+++|+.|||++|+++|.+|..+.++++|+.|++++|+++|.||..+.|
T Consensus       519 ~~~l~~L~~L~Ls~N~l~~~~p-----~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~  593 (968)
T PLN00113        519 LSSCKKLVSLDLSHNQLSGQIP-----ASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAF  593 (968)
T ss_pred             HcCccCCCEEECCCCcccccCC-----hhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchh
Confidence            5566777777777777777777     78888888888888888888888888888888999999999998888876554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.02  E-value=1.8e-10  Score=72.31  Aligned_cols=61  Identities=30%  Similarity=0.327  Sum_probs=51.0

Q ss_pred             CCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccc
Q 036330          111 QELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGI  176 (187)
Q Consensus       111 ~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l  176 (187)
                      ++|++|++++|+++ .+|.    ..+..+++|++|++++|+++..-|..|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~-~i~~----~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLT-EIPP----DSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTES-EECT----TTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCC-ccCH----HHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            46889999999998 4552    5788899999999999999866666889999999999999975

...

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=99.00  E-value=6.4e-10  Score=65.01  Aligned_cols=42  Identities=33%  Similarity=0.642  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCCCCCCCcceeec
Q 036330           32 ETERTALLEIKRFFIAVRDTGYKDEILTSWVDDEMSDCCRWEQVKCV   78 (187)
Q Consensus        32 ~~~~~~Ll~~k~~~~~~~p~~~~~~~l~~W~~~~~~~~C~w~gv~C~   78 (187)
                      ++|+++|++||+++.. +|    ...+.+|+.....+||+|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~-~~----~~~l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNN-DP----SGVLSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT--SC-----CCCTT--TT--S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhccc-cc----CcccccCCCcCCCCCeeeccEEeC
Confidence            5799999999999974 34    467899987533699999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>PLN03150 hypothetical protein; Provisional

Probab=98.98  E-value=1e-09  Score=98.38  Aligned_cols=91  Identities=30%  Similarity=0.409  Sum_probs=77.5

Q ss_pred             CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhc
Q 036330           83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT  162 (187)
Q Consensus        83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~  162 (187)
                      .+++.|+|++|.+.   +.++ ..+..+++|+.|||++|.++|.+|     ..++++++|++|+|++|+++|.+|..++.
T Consensus       442 ~~L~~L~Ls~N~l~---g~iP-~~~~~l~~L~~LdLs~N~lsg~iP-----~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~  512 (623)
T PLN03150        442 RHLQSINLSGNSIR---GNIP-PSLGSITSLEVLDLSYNSFNGSIP-----ESLGQLTSLRILNLNGNSLSGRVPAALGG  512 (623)
T ss_pred             CCCCEEECCCCccc---CcCC-hHHhCCCCCCEEECCCCCCCCCCc-----hHHhcCCCCCEEECcCCcccccCChHHhh
Confidence            46899999999994   2233 347889999999999999999999     89999999999999999999999999987


Q ss_pred             C-CCCCEEEcccccccccCCC
Q 036330          163 I-ISLTNLSLGYCGIEGFIPN  182 (187)
Q Consensus       163 l-~~L~~L~Ls~N~l~G~iP~  182 (187)
                      + .++..+++.+|.....+|.
T Consensus       513 ~~~~~~~l~~~~N~~lc~~p~  533 (623)
T PLN03150        513 RLLHRASFNFTDNAGLCGIPG  533 (623)
T ss_pred             ccccCceEEecCCccccCCCC
Confidence            4 5778999999986555553

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.93  E-value=5.4e-11  Score=89.45  Aligned_cols=92  Identities=27%  Similarity=0.311  Sum_probs=78.6

Q ss_pred             CCCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhh
Q 036330           82 TRRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLT  161 (187)
Q Consensus        82 ~~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~  161 (187)
                      ..+++.+.|+.|.++     ..++.+..+.+|+.|++++|++. .+|     .+++.+++|++|+++-|++. .+|..||
T Consensus        32 ~s~ITrLtLSHNKl~-----~vppnia~l~nlevln~~nnqie-~lp-----~~issl~klr~lnvgmnrl~-~lprgfg   99 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLT-----VVPPNIAELKNLEVLNLSNNQIE-ELP-----TSISSLPKLRILNVGMNRLN-ILPRGFG   99 (264)
T ss_pred             hhhhhhhhcccCcee-----ecCCcHHHhhhhhhhhcccchhh-hcC-----hhhhhchhhhheecchhhhh-cCccccC
Confidence            357899999999994     22234778899999999999998 788     79999999999999999998 7999999


Q ss_pred             cCCCCCEEEcccccccc-cCCCCCC
Q 036330          162 TIISLTNLSLGYCGIEG-FIPNQGM  185 (187)
Q Consensus       162 ~l~~L~~L~Ls~N~l~G-~iP~~~~  185 (187)
                      .++.|++|||.+|+++- .+|...+
T Consensus       100 s~p~levldltynnl~e~~lpgnff  124 (264)
T KOG0617|consen  100 SFPALEVLDLTYNNLNENSLPGNFF  124 (264)
T ss_pred             CCchhhhhhccccccccccCCcchh
Confidence            99999999999999984 5665433

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.66  E-value=3e-08  Score=75.27  Aligned_cols=82  Identities=23%  Similarity=0.248  Sum_probs=31.1

Q ss_pred             CEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCcccccc-CCCCCCCEEEccCCCCCC-CChHHhh
Q 036330           84 RVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSI-GSLKWLKILNLYSNNVNN-SLLPSLT  161 (187)
Q Consensus        84 ~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~-~~l~~L~~L~Ls~N~l~G-~iP~~l~  161 (187)
                      +++.|+|++|.++.+.      .+..++.|+.|++++|.++. ++     ..+ ..+++|++|++++|++.. .-=..+.
T Consensus        43 ~L~~L~Ls~N~I~~l~------~l~~L~~L~~L~L~~N~I~~-i~-----~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~  110 (175)
T PF14580_consen   43 KLEVLDLSNNQITKLE------GLPGLPRLKTLDLSNNRISS-IS-----EGLDKNLPNLQELYLSNNKISDLNELEPLS  110 (175)
T ss_dssp             T--EEE-TTS--S--T------T----TT--EEE--SS---S--C-----HHHHHH-TT--EEE-TTS---SCCCCGGGG
T ss_pred             CCCEEECCCCCCcccc------CccChhhhhhcccCCCCCCc-cc-----cchHHhCCcCCEEECcCCcCCChHHhHHHH
Confidence            5677777777773222      25556777777777777763 33     233 346777777777777753 1113466


Q ss_pred             cCCCCCEEEccccccc
Q 036330          162 TIISLTNLSLGYCGIE  177 (187)
Q Consensus       162 ~l~~L~~L~Ls~N~l~  177 (187)
                      .+++|++|+|.+|.++
T Consensus       111 ~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen  111 SLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             G-TT--EEE-TT-GGG
T ss_pred             cCCCcceeeccCCccc
Confidence            6777777777777766

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.65  E-value=3.4e-08  Score=61.83  Aligned_cols=60  Identities=28%  Similarity=0.366  Sum_probs=51.3

Q ss_pred             CEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCC
Q 036330           84 RVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNV  152 (187)
Q Consensus        84 ~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l  152 (187)
                      +++.|++++|.++    .++...|..+++|++|++++|.++..-|     ..|..+++|++|++++|++
T Consensus         2 ~L~~L~l~~n~l~----~i~~~~f~~l~~L~~L~l~~N~l~~i~~-----~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLT----EIPPDSFSNLPNLETLDLSNNNLTSIPP-----DAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTES----EECTTTTTTGTTESEEEETSSSESEEET-----TTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCC----ccCHHHHcCCCCCCEeEccCCccCccCH-----HHHcCCCCCCEEeCcCCcC
Confidence            5789999999984    3444668899999999999999985555     7899999999999999985

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.55  E-value=6.7e-08  Score=56.66  Aligned_cols=36  Identities=31%  Similarity=0.431  Sum_probs=22.9

Q ss_pred             CCCEEEccCCCCCCCChHHhhcCCCCCEEEccccccc
Q 036330          141 WLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIE  177 (187)
Q Consensus       141 ~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~  177 (187)
                      +|++|++++|+++ .+|+.+++|++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            5666666666666 46666666777777777776666

...

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.54  E-value=3.7e-08  Score=82.59  Aligned_cols=91  Identities=23%  Similarity=0.348  Sum_probs=68.5

Q ss_pred             CEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCC-----------------c--cccccCCCCCCCE
Q 036330           84 RVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKE-----------------G--MYLSIGSLKWLKI  144 (187)
Q Consensus        84 ~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~-----------------~--~~~~~~~l~~L~~  144 (187)
                      +++.++|++|-+..    ++ ..++.+..|+.||++.|+|. .+|.-                 +  .|..+.+|.+|..
T Consensus       436 kLt~L~L~NN~Ln~----LP-~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~t  509 (565)
T KOG0472|consen  436 KLTFLDLSNNLLND----LP-EEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTT  509 (565)
T ss_pred             cceeeecccchhhh----cc-hhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcce
Confidence            45666677666621    22 22556677888888888886 45520                 0  1344889999999


Q ss_pred             EEccCCCCCCCChHHhhcCCCCCEEEcccccccccCCCC
Q 036330          145 LNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPNQ  183 (187)
Q Consensus       145 L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~  183 (187)
                      |||.+|.+. .||+.+|+|++|++|++++|.|+  .|..
T Consensus       510 LDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr--~Pr~  545 (565)
T KOG0472|consen  510 LDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR--QPRH  545 (565)
T ss_pred             eccCCCchh-hCChhhccccceeEEEecCCccC--CCHH
Confidence            999999998 89999999999999999999998  6754

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.53  E-value=1.3e-08  Score=76.78  Aligned_cols=78  Identities=27%  Similarity=0.358  Sum_probs=64.3

Q ss_pred             ccCcCCCCCcEEEccCCcccc-ccCCC------------------ccccccCCCCCCCEEEccCCCCCCCChHHhhcCCC
Q 036330          105 SMFLPFQELESLDLSYNSFYG-VYEKE------------------GMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIIS  165 (187)
Q Consensus       105 ~~l~~l~~L~~L~Ls~N~l~g-~ip~~------------------~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~  165 (187)
                      ..|+.++.|+.|||++|+++- .+|..                  -.|++++++++||.|.+.+|.+- ++|.+++.+++
T Consensus        96 rgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~  174 (264)
T KOG0617|consen   96 RGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTR  174 (264)
T ss_pred             cccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHH
Confidence            457888888999998888764 34421                  13688999999999999999988 79999999999


Q ss_pred             CCEEEcccccccccCCCCC
Q 036330          166 LTNLSLGYCGIEGFIPNQG  184 (187)
Q Consensus       166 L~~L~Ls~N~l~G~iP~~~  184 (187)
                      |+.|++.+|+++ .+|++.
T Consensus       175 lrelhiqgnrl~-vlppel  192 (264)
T KOG0617|consen  175 LRELHIQGNRLT-VLPPEL  192 (264)
T ss_pred             HHHHhcccceee-ecChhh
Confidence            999999999999 788764

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.52  E-value=1e-07  Score=72.38  Aligned_cols=80  Identities=30%  Similarity=0.404  Sum_probs=28.8

Q ss_pred             CEEEEEcCCCCCCCCCCCCCCccCc-CCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHh-h
Q 036330           84 RVKELSLDGITLGANSGFLNLSMFL-PFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSL-T  161 (187)
Q Consensus        84 ~v~~L~L~~~~l~~~~~~~~~~~l~-~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l-~  161 (187)
                      +.++|+|.++.++.+.      .++ .+.+|+.|||++|.++ .++      .+..+++|+.|++++|+++ .+++.+ .
T Consensus        20 ~~~~L~L~~n~I~~Ie------~L~~~l~~L~~L~Ls~N~I~-~l~------~l~~L~~L~~L~L~~N~I~-~i~~~l~~   85 (175)
T PF14580_consen   20 KLRELNLRGNQISTIE------NLGATLDKLEVLDLSNNQIT-KLE------GLPGLPRLKTLDLSNNRIS-SISEGLDK   85 (175)
T ss_dssp             ----------------------S--TT-TT--EEE-TTS--S---T------T----TT--EEE--SS----S-CHHHHH
T ss_pred             cccccccccccccccc------chhhhhcCCCEEECCCCCCc-ccc------CccChhhhhhcccCCCCCC-ccccchHH
Confidence            5789999999984222      244 4789999999999998 454      6888999999999999999 465555 4


Q ss_pred             cCCCCCEEEccccccc
Q 036330          162 TIISLTNLSLGYCGIE  177 (187)
Q Consensus       162 ~l~~L~~L~Ls~N~l~  177 (187)
                      .+++|+.|++++|++.
T Consensus        86 ~lp~L~~L~L~~N~I~  101 (175)
T PF14580_consen   86 NLPNLQELYLSNNKIS  101 (175)
T ss_dssp             H-TT--EEE-TTS---
T ss_pred             hCCcCCEEECcCCcCC
Confidence            6899999999999987

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.37  E-value=1.1e-07  Score=83.98  Aligned_cols=87  Identities=24%  Similarity=0.256  Sum_probs=64.2

Q ss_pred             EEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCC----------------------------------
Q 036330           85 VKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKE----------------------------------  130 (187)
Q Consensus        85 v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~----------------------------------  130 (187)
                      ...|+|++|++.    +++.+.+.+|+.|-+||||+|++. .+|++                                  
T Consensus       128 ~iVLNLS~N~Ie----tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vL  202 (1255)
T KOG0444|consen  128 SIVLNLSYNNIE----TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVL  202 (1255)
T ss_pred             cEEEEcccCccc----cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhh
Confidence            445666666653    344455777888888888888887 34431                                  


Q ss_pred             ----------ccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEccccccc
Q 036330          131 ----------GMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIE  177 (187)
Q Consensus       131 ----------~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~  177 (187)
                                .+|..+..+.+|..+|+|.|.+. .+|+++-++++|+.|+||+|.++
T Consensus       203 hms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it  258 (1255)
T KOG0444|consen  203 HMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT  258 (1255)
T ss_pred             hcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee
Confidence                      14667777788888899999888 78999889999999999888877

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.36  E-value=4.2e-07  Score=82.99  Aligned_cols=42  Identities=24%  Similarity=0.179  Sum_probs=36.6

Q ss_pred             CCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccccCCC
Q 036330          140 KWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPN  182 (187)
Q Consensus       140 ~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~  182 (187)
                      .+|+.|++++|+++ .+|..++++++|+.|+|++|.|+|.+|.
T Consensus       422 ~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        422 SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence            45777888888887 7899999999999999999999998765

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.34  E-value=2.4e-07  Score=81.03  Aligned_cols=91  Identities=23%  Similarity=0.199  Sum_probs=50.3

Q ss_pred             CCCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCc--------------------cccccCCCCC
Q 036330           82 TRRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEG--------------------MYLSIGSLKW  141 (187)
Q Consensus        82 ~~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~--------------------~~~~~~~l~~  141 (187)
                      .++++.|+|.+|.++.+.    .+.+..++.|+.||||.|.++ .+|..-                    .-..|..+.+
T Consensus       124 sghl~~L~L~~N~I~sv~----se~L~~l~alrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lns  198 (873)
T KOG4194|consen  124 SGHLEKLDLRHNLISSVT----SEELSALPALRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNS  198 (873)
T ss_pred             ccceeEEeeecccccccc----HHHHHhHhhhhhhhhhhchhh-cccCCCCCCCCCceEEeeccccccccccccccccch
Confidence            357888888888874222    233445555566666665555 333200                    0034555556


Q ss_pred             CCEEEccCCCCCCCChHHhhcCCCCCEEEccccccc
Q 036330          142 LKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIE  177 (187)
Q Consensus       142 L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~  177 (187)
                      |..|.|+.|+++-.-+..|.+|++|+.|+|..|++.
T Consensus       199 L~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir  234 (873)
T KOG4194|consen  199 LLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR  234 (873)
T ss_pred             heeeecccCcccccCHHHhhhcchhhhhhcccccee
Confidence            666666666666322234555666666666666654

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.31  E-value=8.6e-08  Score=80.48  Aligned_cols=95  Identities=28%  Similarity=0.235  Sum_probs=73.4

Q ss_pred             CEEEEEcCCCCCCCCCC-------------------CCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCE
Q 036330           84 RVKELSLDGITLGANSG-------------------FLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKI  144 (187)
Q Consensus        84 ~v~~L~L~~~~l~~~~~-------------------~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~  144 (187)
                      -|+.++++.|++...+.                   .+.+..++.+++|..|+|++|.+. .+|     .+++.+..||.
T Consensus       389 ~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP-----~e~~~lv~Lq~  462 (565)
T KOG0472|consen  389 IVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLP-----EEMGSLVRLQT  462 (565)
T ss_pred             ceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcc-----hhhhhhhhhhe
Confidence            48999999998742110                   122334667899999999999988 788     89999999999


Q ss_pred             EEccCCCCC----------------------CCChHH-hhcCCCCCEEEcccccccccCCCCCC
Q 036330          145 LNLYSNNVN----------------------NSLLPS-LTTIISLTNLSLGYCGIEGFIPNQGM  185 (187)
Q Consensus       145 L~Ls~N~l~----------------------G~iP~~-l~~l~~L~~L~Ls~N~l~G~iP~~~~  185 (187)
                      ||++.|+|.                      |.+|+. +.+|.+|..|||.+|.+. .||+..+
T Consensus       463 LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~Lg  525 (565)
T KOG0472|consen  463 LNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILG  525 (565)
T ss_pred             ecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhc
Confidence            999999875                      233443 777889999999999998 8887543

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.31  E-value=7.3e-08  Score=87.56  Aligned_cols=83  Identities=27%  Similarity=0.278  Sum_probs=57.0

Q ss_pred             CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhc
Q 036330           83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT  162 (187)
Q Consensus        83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~  162 (187)
                      .+++-|+|++|.+.    .++.+.+.++..|+.|+||+|.++ .+|     ..+.+++.|++|...+|++. ..| ++.+
T Consensus       383 ~hLKVLhLsyNrL~----~fpas~~~kle~LeeL~LSGNkL~-~Lp-----~tva~~~~L~tL~ahsN~l~-~fP-e~~~  450 (1081)
T KOG0618|consen  383 KHLKVLHLSYNRLN----SFPASKLRKLEELEELNLSGNKLT-TLP-----DTVANLGRLHTLRAHSNQLL-SFP-ELAQ  450 (1081)
T ss_pred             cceeeeeecccccc----cCCHHHHhchHHhHHHhcccchhh-hhh-----HHHHhhhhhHHHhhcCCcee-ech-hhhh
Confidence            47899999999983    455567888999999999999998 677     45555555555555555554 445 4555


Q ss_pred             CCCCCEEEccccccc
Q 036330          163 IISLTNLSLGYCGIE  177 (187)
Q Consensus       163 l~~L~~L~Ls~N~l~  177 (187)
                      +++|+++|++.|+|+
T Consensus       451 l~qL~~lDlS~N~L~  465 (1081)
T KOG0618|consen  451 LPQLKVLDLSCNNLS  465 (1081)
T ss_pred             cCcceEEecccchhh
Confidence            555555555555554

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.28  E-value=2.2e-07  Score=81.27  Aligned_cols=83  Identities=29%  Similarity=0.308  Sum_probs=39.7

Q ss_pred             CEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcC
Q 036330           84 RVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTI  163 (187)
Q Consensus        84 ~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l  163 (187)
                      .+..|+|+.|+++.    ++..-+-+|+.|+.|+||+|.+...-+     ..|...++|++|||++|+++---+.+|..|
T Consensus       270 kme~l~L~~N~l~~----vn~g~lfgLt~L~~L~lS~NaI~rih~-----d~WsftqkL~~LdLs~N~i~~l~~~sf~~L  340 (873)
T KOG4194|consen  270 KMEHLNLETNRLQA----VNEGWLFGLTSLEQLDLSYNAIQRIHI-----DSWSFTQKLKELDLSSNRITRLDEGSFRVL  340 (873)
T ss_pred             ccceeecccchhhh----hhcccccccchhhhhccchhhhheeec-----chhhhcccceeEeccccccccCChhHHHHH
Confidence            35556666666531    111223445556666666665554333     455555555555555555553223334333


Q ss_pred             CCCCEEEccccc
Q 036330          164 ISLTNLSLGYCG  175 (187)
Q Consensus       164 ~~L~~L~Ls~N~  175 (187)
                      ++|+.|+|+.|.
T Consensus       341 ~~Le~LnLs~Ns  352 (873)
T KOG4194|consen  341 SQLEELNLSHNS  352 (873)
T ss_pred             HHhhhhcccccc
Confidence            333333333333

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.28  E-value=1.2e-05  Score=73.58  Aligned_cols=41  Identities=12%  Similarity=0.058  Sum_probs=30.1

Q ss_pred             HHhcCCCCcHHHHHHHHHHHhhccccCCCCCCCCCCCC----CCCCCCCCCCCC
Q 036330           23 QMHGYRGCLETERTALLEIKRFFIAVRDTGYKDEILTS----WVDDEMSDCCRW   72 (187)
Q Consensus        23 ~~~~~~~~~~~~~~~Ll~~k~~~~~~~p~~~~~~~l~~----W~~~~~~~~C~w   72 (187)
                      .++......++|.+.++++.+.+.+  |.     ...+    |+..  .++|.-
T Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~l~~--p~-----~~~~~~~~~~~~--~~fc~~   97 (754)
T PRK15370         53 LCHPPETASPEEIKSKFECLRMLAF--PA-----YADNIQYSRGGA--DQYCIL   97 (754)
T ss_pred             HhCCCCCCCHHHHHHHHHHHHHhcC--Cc-----hhhccccccCCC--Cccccc
Confidence            3566677888999999999999874  53     3444    8775  678853

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.26  E-value=1.1e-06  Score=51.49  Aligned_cols=40  Identities=33%  Similarity=0.407  Sum_probs=33.2

Q ss_pred             CCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCCh
Q 036330          111 QELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLL  157 (187)
Q Consensus       111 ~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP  157 (187)
                      ++|++|++++|.++ .+|     +++++|++|++|++++|+++ .+|
T Consensus         1 ~~L~~L~l~~N~i~-~l~-----~~l~~l~~L~~L~l~~N~i~-~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLP-----PELSNLPNLETLNLSNNPIS-DIS   40 (44)
T ss_dssp             TT-SEEEETSSS-S-SHG-----GHGTTCTTSSEEEETSSCCS-BEG
T ss_pred             CcceEEEccCCCCc-ccC-----chHhCCCCCCEEEecCCCCC-CCc
Confidence            47899999999999 678     67999999999999999998 343

...

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.18  E-value=2.6e-07  Score=81.62  Aligned_cols=71  Identities=30%  Similarity=0.335  Sum_probs=49.0

Q ss_pred             CcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccccCCCC
Q 036330          107 FLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPNQ  183 (187)
Q Consensus       107 l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~  183 (187)
                      ++.|+.|+.+++..|++..    .|+|.++..+..|..||||.|++. ..|..+..-.++-+|+||+|++. +||.+
T Consensus        74 Ls~Lp~LRsv~~R~N~LKn----sGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~  144 (1255)
T KOG0444|consen   74 LSDLPRLRSVIVRDNNLKN----SGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNS  144 (1255)
T ss_pred             hccchhhHHHhhhcccccc----CCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCch
Confidence            4455556666666665532    123377777888888888888887 67777777777788888888877 77765

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.13  E-value=7.5e-07  Score=81.18  Aligned_cols=86  Identities=26%  Similarity=0.340  Sum_probs=73.9

Q ss_pred             CEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcC
Q 036330           84 RVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTI  163 (187)
Q Consensus        84 ~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l  163 (187)
                      ++.+|++++|.+.    .++.. +..+.+|+.|+++.|.+. .+|     .+...+.+|++|.|..|++. .+|.++..+
T Consensus        46 ~L~~l~lsnn~~~----~fp~~-it~l~~L~~ln~s~n~i~-~vp-----~s~~~~~~l~~lnL~~n~l~-~lP~~~~~l  113 (1081)
T KOG0618|consen   46 KLKSLDLSNNQIS----SFPIQ-ITLLSHLRQLNLSRNYIR-SVP-----SSCSNMRNLQYLNLKNNRLQ-SLPASISEL  113 (1081)
T ss_pred             eeEEeeccccccc----cCCch-hhhHHHHhhcccchhhHh-hCc-----hhhhhhhcchhheeccchhh-cCchhHHhh
Confidence            3889999999982    23322 667889999999999988 678     78999999999999999998 799999999


Q ss_pred             CCCCEEEcccccccccCCC
Q 036330          164 ISLTNLSLGYCGIEGFIPN  182 (187)
Q Consensus       164 ~~L~~L~Ls~N~l~G~iP~  182 (187)
                      .+|++|++++|+|. .+|.
T Consensus       114 knl~~LdlS~N~f~-~~Pl  131 (1081)
T KOG0618|consen  114 KNLQYLDLSFNHFG-PIPL  131 (1081)
T ss_pred             hcccccccchhccC-CCch
Confidence            99999999999998 7774

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.08  E-value=4.7e-07  Score=65.90  Aligned_cols=90  Identities=18%  Similarity=0.149  Sum_probs=74.8

Q ss_pred             CCCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhh
Q 036330           82 TRRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLT  161 (187)
Q Consensus        82 ~~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~  161 (187)
                      .-+++.++|++|.+.    .++...-..++.++.|+|++|.++ .+|     .++..++.|+.|+++.|.|. ..|..+.
T Consensus        52 ~~el~~i~ls~N~fk----~fp~kft~kf~t~t~lNl~~neis-dvP-----eE~Aam~aLr~lNl~~N~l~-~~p~vi~  120 (177)
T KOG4579|consen   52 GYELTKISLSDNGFK----KFPKKFTIKFPTATTLNLANNEIS-DVP-----EELAAMPALRSLNLRFNPLN-AEPRVIA  120 (177)
T ss_pred             CceEEEEecccchhh----hCCHHHhhccchhhhhhcchhhhh-hch-----HHHhhhHHhhhcccccCccc-cchHHHH
Confidence            457999999999983    233343345678999999999998 788     88999999999999999999 6888888


Q ss_pred             cCCCCCEEEcccccccccCCCC
Q 036330          162 TIISLTNLSLGYCGIEGFIPNQ  183 (187)
Q Consensus       162 ~l~~L~~L~Ls~N~l~G~iP~~  183 (187)
                      .|.+|-.|+..+|... +||-.
T Consensus       121 ~L~~l~~Lds~~na~~-eid~d  141 (177)
T KOG4579|consen  121 PLIKLDMLDSPENARA-EIDVD  141 (177)
T ss_pred             HHHhHHHhcCCCCccc-cCcHH
Confidence            8999999999999887 77644

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.06  E-value=8.9e-07  Score=74.22  Aligned_cols=85  Identities=26%  Similarity=0.272  Sum_probs=56.8

Q ss_pred             CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccC-CCCCCCChH-Hh
Q 036330           83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYS-NNVNNSLLP-SL  160 (187)
Q Consensus        83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~-N~l~G~iP~-~l  160 (187)
                      ...++|+|..|+|+    .++...|..+++|+.||||+|.|+-.-|     ..|.++++|..|-+.+ |+++ .+|. .|
T Consensus        67 ~~tveirLdqN~I~----~iP~~aF~~l~~LRrLdLS~N~Is~I~p-----~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F  136 (498)
T KOG4237|consen   67 PETVEIRLDQNQIS----SIPPGAFKTLHRLRRLDLSKNNISFIAP-----DAFKGLASLLSLVLYGNNKIT-DLPKGAF  136 (498)
T ss_pred             CcceEEEeccCCcc----cCChhhccchhhhceecccccchhhcCh-----HhhhhhHhhhHHHhhcCCchh-hhhhhHh
Confidence            35788999999985    3444678889999999999999885555     5666666665554444 6666 3443 45


Q ss_pred             hcCCCCCEEEccccccc
Q 036330          161 TTIISLTNLSLGYCGIE  177 (187)
Q Consensus       161 ~~l~~L~~L~Ls~N~l~  177 (187)
                      ++|.+|+.|.+..|++.
T Consensus       137 ~gL~slqrLllNan~i~  153 (498)
T KOG4237|consen  137 GGLSSLQRLLLNANHIN  153 (498)
T ss_pred             hhHHHHHHHhcChhhhc
Confidence            55555555555555544

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.03  E-value=1.9e-06  Score=70.32  Aligned_cols=64  Identities=23%  Similarity=0.337  Sum_probs=30.9

Q ss_pred             CCCCCcEEEccCCccccc----cCCCccccccCCCCCCCEEEccCCCCCCC----ChHHhhcCCCCCEEEccccccc
Q 036330          109 PFQELESLDLSYNSFYGV----YEKEGMYLSIGSLKWLKILNLYSNNVNNS----LLPSLTTIISLTNLSLGYCGIE  177 (187)
Q Consensus       109 ~l~~L~~L~Ls~N~l~g~----ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~----iP~~l~~l~~L~~L~Ls~N~l~  177 (187)
                      .+++|++|++++|.+++.    ++     ..+..+++|++|++++|.+++.    ++..+..+++|++|++++|.++
T Consensus       163 ~~~~L~~L~l~~n~l~~~~~~~l~-----~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         163 ANRDLKELNLANNGIGDAGIRALA-----EGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             hCCCcCEEECcCCCCchHHHHHHH-----HHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence            344555555555555531    11     2233344555555555555432    2223344555555555555554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03210 Resistant to P

Probab=97.94  E-value=2.6e-05  Score=74.70  Aligned_cols=88  Identities=18%  Similarity=0.217  Sum_probs=56.1

Q ss_pred             CEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcC
Q 036330           84 RVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTI  163 (187)
Q Consensus        84 ~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l  163 (187)
                      .++.|+++++.+..    ++ ..+..+++|+.|+|+++..-+.+|      .++.+++|+.|+|++|..-..+|..++++
T Consensus       612 ~L~~L~L~~s~l~~----L~-~~~~~l~~Lk~L~Ls~~~~l~~ip------~ls~l~~Le~L~L~~c~~L~~lp~si~~L  680 (1153)
T PLN03210        612 NLVKLQMQGSKLEK----LW-DGVHSLTGLRNIDLRGSKNLKEIP------DLSMATNLETLKLSDCSSLVELPSSIQYL  680 (1153)
T ss_pred             CCcEEECcCccccc----cc-cccccCCCCCEEECCCCCCcCcCC------ccccCCcccEEEecCCCCccccchhhhcc
Confidence            45555555555521    11 124456777777777765445665      46677777777777776656777777777


Q ss_pred             CCCCEEEcccccccccCCC
Q 036330          164 ISLTNLSLGYCGIEGFIPN  182 (187)
Q Consensus       164 ~~L~~L~Ls~N~l~G~iP~  182 (187)
                      ++|+.|++++|..-+.+|.
T Consensus       681 ~~L~~L~L~~c~~L~~Lp~  699 (1153)
T PLN03210        681 NKLEDLDMSRCENLEILPT  699 (1153)
T ss_pred             CCCCEEeCCCCCCcCccCC
Confidence            7777777777654446665

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=97.90  E-value=2.6e-05  Score=74.70  Aligned_cols=88  Identities=23%  Similarity=0.164  Sum_probs=62.0

Q ss_pred             CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhc
Q 036330           83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT  162 (187)
Q Consensus        83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~  162 (187)
                      .+++.|+|+++..  .. .+  +.+..+++|+.|+|++|..-..+|     ..++.+++|+.|++++|..-+.+|..+ +
T Consensus       634 ~~Lk~L~Ls~~~~--l~-~i--p~ls~l~~Le~L~L~~c~~L~~lp-----~si~~L~~L~~L~L~~c~~L~~Lp~~i-~  702 (1153)
T PLN03210        634 TGLRNIDLRGSKN--LK-EI--PDLSMATNLETLKLSDCSSLVELP-----SSIQYLNKLEDLDMSRCENLEILPTGI-N  702 (1153)
T ss_pred             CCCCEEECCCCCC--cC-cC--CccccCCcccEEEecCCCCccccc-----hhhhccCCCCEEeCCCCCCcCccCCcC-C
Confidence            4688899987653  11 12  226678889999999887666788     788888888888888876555777655 6


Q ss_pred             CCCCCEEEcccccccccCC
Q 036330          163 IISLTNLSLGYCGIEGFIP  181 (187)
Q Consensus       163 l~~L~~L~Ls~N~l~G~iP  181 (187)
                      +++|+.|++++|...+.+|
T Consensus       703 l~sL~~L~Lsgc~~L~~~p  721 (1153)
T PLN03210        703 LKSLYRLNLSGCSRLKSFP  721 (1153)
T ss_pred             CCCCCEEeCCCCCCccccc
Confidence            6777777777665444444

syringae 6; Provisional

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.88  E-value=4e-06  Score=68.36  Aligned_cols=66  Identities=27%  Similarity=0.313  Sum_probs=38.4

Q ss_pred             CCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCC----ChHHhhcCCCCCEEEccccccc
Q 036330          111 QELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNS----LLPSLTTIISLTNLSLGYCGIE  177 (187)
Q Consensus       111 ~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~----iP~~l~~l~~L~~L~Ls~N~l~  177 (187)
                      ++|+.|++++|.+++.... ..+..+..+++|++|++++|.+++.    ++..+..+++|++|++++|.++
T Consensus       137 ~~L~~L~L~~n~l~~~~~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  206 (319)
T cd00116         137 PALEKLVLGRNRLEGASCE-ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLT  206 (319)
T ss_pred             CCceEEEcCCCcCCchHHH-HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccC
Confidence            5666667776666632110 0003445556677777777777642    3344555567777777777765

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=97.85  E-value=8e-06  Score=68.63  Aligned_cols=85  Identities=21%  Similarity=0.157  Sum_probs=67.2

Q ss_pred             EEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCC
Q 036330           86 KELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIIS  165 (187)
Q Consensus        86 ~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~  165 (187)
                      ..++.++.+++.++..++       +.-..|+|-.|.|+ .||+    ..|+.+++|+.|||++|+++-.-|+.|..+.+
T Consensus        49 ~~VdCr~~GL~eVP~~LP-------~~tveirLdqN~I~-~iP~----~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~  116 (498)
T KOG4237|consen   49 GIVDCRGKGLTEVPANLP-------PETVEIRLDQNQIS-SIPP----GAFKTLHRLRRLDLSKNNISFIAPDAFKGLAS  116 (498)
T ss_pred             ceEEccCCCcccCcccCC-------CcceEEEeccCCcc-cCCh----hhccchhhhceecccccchhhcChHhhhhhHh
Confidence            445666666643333333       35688999999999 6773    78999999999999999999999999999999


Q ss_pred             CCEEEccc-ccccccCCCC
Q 036330          166 LTNLSLGY-CGIEGFIPNQ  183 (187)
Q Consensus       166 L~~L~Ls~-N~l~G~iP~~  183 (187)
                      |..|-+.+ |+|+ .||..
T Consensus       117 l~~Lvlyg~NkI~-~l~k~  134 (498)
T KOG4237|consen  117 LLSLVLYGNNKIT-DLPKG  134 (498)
T ss_pred             hhHHHhhcCCchh-hhhhh
Confidence            88887766 8898 78864

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.83  E-value=4.2e-05  Score=70.18  Aligned_cols=13  Identities=23%  Similarity=0.281  Sum_probs=8.1

Q ss_pred             CCCEEEccccccc
Q 036330          165 SLTNLSLGYCGIE  177 (187)
Q Consensus       165 ~L~~L~Ls~N~l~  177 (187)
                      +|++|+|++|+|+
T Consensus       343 ~Lq~LdLS~N~Ls  355 (788)
T PRK15387        343 GLQELSVSDNQLA  355 (788)
T ss_pred             ccceEecCCCccC
Confidence            4566666666666

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=97.83  E-value=2.8e-05  Score=71.20  Aligned_cols=37  Identities=30%  Similarity=0.383  Sum_probs=22.1

Q ss_pred             CCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccccCC
Q 036330          141 WLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIP  181 (187)
Q Consensus       141 ~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP  181 (187)
                      +|+.|++++|+++ .+|..+.  .+|+.|++++|+|+ .+|
T Consensus       263 ~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP  299 (754)
T PRK15370        263 ALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLP  299 (754)
T ss_pred             CCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCc
Confidence            5666666666666 3555443  35666666666666 344

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.76  E-value=7.5e-06  Score=66.90  Aligned_cols=82  Identities=28%  Similarity=0.321  Sum_probs=45.7

Q ss_pred             CEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCC--------
Q 036330           84 RVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNS--------  155 (187)
Q Consensus        84 ~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~--------  155 (187)
                      .++++||++|.++.+..     ...-++.++.|++|+|.+. .+      ..+..+++|+.||||+|.++..        
T Consensus       285 ~LtelDLS~N~I~~iDE-----SvKL~Pkir~L~lS~N~i~-~v------~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLG  352 (490)
T KOG1259|consen  285 ELTELDLSGNLITQIDE-----SVKLAPKLRRLILSQNRIR-TV------QNLAELPQLQLLDLSGNLLAECVGWHLKLG  352 (490)
T ss_pred             hhhhccccccchhhhhh-----hhhhccceeEEecccccee-ee------hhhhhcccceEeecccchhHhhhhhHhhhc
Confidence            35567777776632211     1223456667777777665 23      2456666677777777665411        


Q ss_pred             -C------------hHHhhcCCCCCEEEccccccc
Q 036330          156 -L------------LPSLTTIISLTNLSLGYCGIE  177 (187)
Q Consensus       156 -i------------P~~l~~l~~L~~L~Ls~N~l~  177 (187)
                       |            -..++++-+|.+||+.+|++.
T Consensus       353 NIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie  387 (490)
T KOG1259|consen  353 NIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQIE  387 (490)
T ss_pred             CEeeeehhhhhHhhhhhhHhhhhheeccccccchh
Confidence             0            112445566777777777664

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.76  E-value=2e-05  Score=66.73  Aligned_cols=87  Identities=26%  Similarity=0.303  Sum_probs=65.5

Q ss_pred             CEEEEEcCCCCCCCCCCCCCCccCcCCC-CCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhc
Q 036330           84 RVKELSLDGITLGANSGFLNLSMFLPFQ-ELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT  162 (187)
Q Consensus        84 ~v~~L~L~~~~l~~~~~~~~~~~l~~l~-~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~  162 (187)
                      .++.+++.++.++.+.+     ....++ +|+.|++++|.+. .+|     ..+..++.|+.|++++|+++ .+|...+.
T Consensus       117 ~l~~L~l~~n~i~~i~~-----~~~~~~~nL~~L~l~~N~i~-~l~-----~~~~~l~~L~~L~l~~N~l~-~l~~~~~~  184 (394)
T COG4886         117 NLTSLDLDNNNITDIPP-----LIGLLKSNLKELDLSDNKIE-SLP-----SPLRNLPNLKNLDLSFNDLS-DLPKLLSN  184 (394)
T ss_pred             ceeEEecCCcccccCcc-----ccccchhhcccccccccchh-hhh-----hhhhccccccccccCCchhh-hhhhhhhh
Confidence            46777777777742222     122343 7889999999887 565     56888899999999999988 68887778


Q ss_pred             CCCCCEEEcccccccccCCCC
Q 036330          163 IISLTNLSLGYCGIEGFIPNQ  183 (187)
Q Consensus       163 l~~L~~L~Ls~N~l~G~iP~~  183 (187)
                      +++|+.|++++|+++ .||..
T Consensus       185 ~~~L~~L~ls~N~i~-~l~~~  204 (394)
T COG4886         185 LSNLNNLDLSGNKIS-DLPPE  204 (394)
T ss_pred             hhhhhheeccCCccc-cCchh
Confidence            888999999999988 77764

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.53  E-value=3e-05  Score=72.15  Aligned_cols=87  Identities=29%  Similarity=0.297  Sum_probs=69.5

Q ss_pred             CEEEEEcCCCC--CCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhh
Q 036330           84 RVKELSLDGIT--LGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLT  161 (187)
Q Consensus        84 ~v~~L~L~~~~--l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~  161 (187)
                      .+++|-+.++.  +.    ..+...|..++.|++|||++|.=-+.+|     ..++.|-+|++|+|+...++ .+|..++
T Consensus       546 ~L~tLll~~n~~~l~----~is~~ff~~m~~LrVLDLs~~~~l~~LP-----~~I~~Li~LryL~L~~t~I~-~LP~~l~  615 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLL----EISGEFFRSLPLLRVLDLSGNSSLSKLP-----SSIGELVHLRYLDLSDTGIS-HLPSGLG  615 (889)
T ss_pred             ccceEEEeecchhhh----hcCHHHHhhCcceEEEECCCCCccCcCC-----hHHhhhhhhhcccccCCCcc-ccchHHH
Confidence            45666666654  21    2222347789999999999987667899     89999999999999999999 8999999


Q ss_pred             cCCCCCEEEcccccccccC
Q 036330          162 TIISLTNLSLGYCGIEGFI  180 (187)
Q Consensus       162 ~l~~L~~L~Ls~N~l~G~i  180 (187)
                      +|.+|.+||+..+.-...+
T Consensus       616 ~Lk~L~~Lnl~~~~~l~~~  634 (889)
T KOG4658|consen  616 NLKKLIYLNLEVTGRLESI  634 (889)
T ss_pred             HHHhhheeccccccccccc
Confidence            9999999999987754444

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.50  E-value=1.9e-05  Score=57.63  Aligned_cols=64  Identities=22%  Similarity=0.293  Sum_probs=55.6

Q ss_pred             CcCCCCCcEEEccCCccccccCCCccccccC-CCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEccccccc
Q 036330          107 FLPFQELESLDLSYNSFYGVYEKEGMYLSIG-SLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIE  177 (187)
Q Consensus       107 l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~-~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~  177 (187)
                      +....+|+.++|++|.|. .+|     ..+. ..+.++.|+|++|+++ .+|.++..++.|+.|++++|.|.
T Consensus        49 l~~~~el~~i~ls~N~fk-~fp-----~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~  113 (177)
T KOG4579|consen   49 LSKGYELTKISLSDNGFK-KFP-----KKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN  113 (177)
T ss_pred             HhCCceEEEEecccchhh-hCC-----HHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc
Confidence            455678999999999998 566     5554 4568999999999999 79999999999999999999987

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.46  E-value=4.2e-05  Score=62.63  Aligned_cols=60  Identities=28%  Similarity=0.262  Sum_probs=51.8

Q ss_pred             CCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEccccccc
Q 036330          110 FQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIE  177 (187)
Q Consensus       110 l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~  177 (187)
                      .+.|+.+|||+|.++ .+.     .+..-++.++.|++|.|.+. .+ ..+..+++|+.|||++|.++
T Consensus       283 Wq~LtelDLS~N~I~-~iD-----ESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls  342 (490)
T KOG1259|consen  283 WQELTELDLSGNLIT-QID-----ESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLA  342 (490)
T ss_pred             Hhhhhhccccccchh-hhh-----hhhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhH
Confidence            467899999999998 566     67788899999999999997 34 44888999999999999887

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.44  E-value=1.2e-05  Score=72.19  Aligned_cols=81  Identities=28%  Similarity=0.404  Sum_probs=53.3

Q ss_pred             CEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcC
Q 036330           84 RVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTI  163 (187)
Q Consensus        84 ~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l  163 (187)
                      .+..|+|+.|.++.      ...+..|++|+.|||++|.++ .+|.    -....++ |+.|.+.+|.++. + ..+.+|
T Consensus       188 ale~LnLshNk~~~------v~~Lr~l~~LkhLDlsyN~L~-~vp~----l~~~gc~-L~~L~lrnN~l~t-L-~gie~L  253 (1096)
T KOG1859|consen  188 ALESLNLSHNKFTK------VDNLRRLPKLKHLDLSYNCLR-HVPQ----LSMVGCK-LQLLNLRNNALTT-L-RGIENL  253 (1096)
T ss_pred             Hhhhhccchhhhhh------hHHHHhcccccccccccchhc-cccc----cchhhhh-heeeeecccHHHh-h-hhHHhh
Confidence            45667777777721      123667788889999999887 5662    1223344 7777777777652 2 346677


Q ss_pred             CCCCEEEcccccccc
Q 036330          164 ISLTNLSLGYCGIEG  178 (187)
Q Consensus       164 ~~L~~L~Ls~N~l~G  178 (187)
                      .+|+.||+++|-|+|
T Consensus       254 ksL~~LDlsyNll~~  268 (1096)
T KOG1859|consen  254 KSLYGLDLSYNLLSE  268 (1096)
T ss_pred             hhhhccchhHhhhhc
Confidence            778888888887664

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.31  E-value=0.00017  Score=61.01  Aligned_cols=84  Identities=35%  Similarity=0.419  Sum_probs=65.9

Q ss_pred             EEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCC-CCCEEEccCCCCCCCChHHhhcCCC
Q 036330           87 ELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLK-WLKILNLYSNNVNNSLLPSLTTIIS  165 (187)
Q Consensus        87 ~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~-~L~~L~Ls~N~l~G~iP~~l~~l~~  165 (187)
                      .+++..+.+.     .....+..++.++.|++.+|.++ .+|     .....++ +|+.|++++|++. .+|..++.+++
T Consensus        97 ~l~~~~~~~~-----~~~~~~~~~~~l~~L~l~~n~i~-~i~-----~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~  164 (394)
T COG4886          97 SLDLNLNRLR-----SNISELLELTNLTSLDLDNNNIT-DIP-----PLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPN  164 (394)
T ss_pred             eeeccccccc-----cCchhhhcccceeEEecCCcccc-cCc-----cccccchhhcccccccccchh-hhhhhhhcccc
Confidence            3566665551     11222445678999999999998 677     5677774 9999999999998 78888999999


Q ss_pred             CCEEEcccccccccCCCC
Q 036330          166 LTNLSLGYCGIEGFIPNQ  183 (187)
Q Consensus       166 L~~L~Ls~N~l~G~iP~~  183 (187)
                      |+.|++++|+++ .+|..
T Consensus       165 L~~L~l~~N~l~-~l~~~  181 (394)
T COG4886         165 LKNLDLSFNDLS-DLPKL  181 (394)
T ss_pred             ccccccCCchhh-hhhhh
Confidence            999999999999 67653

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.30  E-value=1.7e-05  Score=69.32  Aligned_cols=46  Identities=26%  Similarity=0.431  Sum_probs=24.7

Q ss_pred             cccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccccCCC
Q 036330          134 LSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPN  182 (187)
Q Consensus       134 ~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~  182 (187)
                      .+++.+.+|+.|.+..|++. .+|++++.| .|..||++.|+++ .||.
T Consensus       183 sql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv  228 (722)
T KOG0532|consen  183 SQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPV  228 (722)
T ss_pred             HHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecch
Confidence            44555555555555555554 355555533 3556666666666 5554

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.24  E-value=2.7e-05  Score=68.19  Aligned_cols=63  Identities=19%  Similarity=0.185  Sum_probs=50.6

Q ss_pred             CcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEccccccc
Q 036330          107 FLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIE  177 (187)
Q Consensus       107 l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~  177 (187)
                      ++.+.+|+.|.+..|++. .+|     +++..|+ |..||+|.|+++ .||.+|.+|+.|++|-|.+|.|+
T Consensus       185 l~~l~slr~l~vrRn~l~-~lp-----~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  185 LGYLTSLRDLNVRRNHLE-DLP-----EELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             hhhHHHHHHHHHhhhhhh-hCC-----HHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence            445556666666666655 455     7777554 899999999999 79999999999999999999998

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.08  E-value=0.00025  Score=60.79  Aligned_cols=81  Identities=27%  Similarity=0.402  Sum_probs=56.7

Q ss_pred             CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhc
Q 036330           83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT  162 (187)
Q Consensus        83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~  162 (187)
                      ..+..+++.+|.+..+..     .+..+++|++|++++|.++...       .+..++.|+.|++++|.++. + ..+..
T Consensus        95 ~~l~~l~l~~n~i~~i~~-----~l~~~~~L~~L~ls~N~I~~i~-------~l~~l~~L~~L~l~~N~i~~-~-~~~~~  160 (414)
T KOG0531|consen   95 KSLEALDLYDNKIEKIEN-----LLSSLVNLQVLDLSFNKITKLE-------GLSTLTLLKELNLSGNLISD-I-SGLES  160 (414)
T ss_pred             cceeeeeccccchhhccc-----chhhhhcchheecccccccccc-------chhhccchhhheeccCcchh-c-cCCcc
Confidence            457788888888732211     1456788888888888887443       36667778888888888763 3 33455


Q ss_pred             CCCCCEEEccccccc
Q 036330          163 IISLTNLSLGYCGIE  177 (187)
Q Consensus       163 l~~L~~L~Ls~N~l~  177 (187)
                      +.+|+.+++++|++.
T Consensus       161 l~~L~~l~l~~n~i~  175 (414)
T KOG0531|consen  161 LKSLKLLDLSYNRIV  175 (414)
T ss_pred             chhhhcccCCcchhh
Confidence            778888888888877

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.96  E-value=0.00019  Score=35.47  Aligned_cols=11  Identities=36%  Similarity=0.579  Sum_probs=4.2

Q ss_pred             CEEEccCCCCC
Q 036330          143 KILNLYSNNVN  153 (187)
Q Consensus       143 ~~L~Ls~N~l~  153 (187)
                      ++|||++|+++
T Consensus         3 ~~Ldls~n~l~   13 (22)
T PF00560_consen    3 EYLDLSGNNLT   13 (22)
T ss_dssp             SEEEETSSEES
T ss_pred             cEEECCCCcCE
Confidence            33333333333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=96.96  E-value=3.7e-05  Score=69.18  Aligned_cols=79  Identities=27%  Similarity=0.190  Sum_probs=54.9

Q ss_pred             EEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHH-hhcC
Q 036330           85 VKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPS-LTTI  163 (187)
Q Consensus        85 v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~-l~~l  163 (187)
                      +..++.+.|.+.     ...+.+.-++.|+.|||++|+++..       +.+..+++|++|||++|.+. .+|.- ...+
T Consensus       166 L~~a~fsyN~L~-----~mD~SLqll~ale~LnLshNk~~~v-------~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc  232 (1096)
T KOG1859|consen  166 LATASFSYNRLV-----LMDESLQLLPALESLNLSHNKFTKV-------DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC  232 (1096)
T ss_pred             HhhhhcchhhHH-----hHHHHHHHHHHhhhhccchhhhhhh-------HHHHhcccccccccccchhc-cccccchhhh
Confidence            444555555552     1112244567899999999998842       46788899999999999998 56652 2234


Q ss_pred             CCCCEEEccccccc
Q 036330          164 ISLTNLSLGYCGIE  177 (187)
Q Consensus       164 ~~L~~L~Ls~N~l~  177 (187)
                      . |+.|++.+|.++
T Consensus       233 ~-L~~L~lrnN~l~  245 (1096)
T KOG1859|consen  233 K-LQLLNLRNNALT  245 (1096)
T ss_pred             h-heeeeecccHHH
Confidence            3 899999999776

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.92  E-value=0.00013  Score=59.57  Aligned_cols=86  Identities=27%  Similarity=0.307  Sum_probs=60.4

Q ss_pred             CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCcccccc-CCCCCCCEEEccCCCCCCC-ChHHh
Q 036330           83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSI-GSLKWLKILNLYSNNVNNS-LLPSL  160 (187)
Q Consensus        83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~-~~l~~L~~L~Ls~N~l~G~-iP~~l  160 (187)
                      .+|.++||.+|.++......  ..+.++++|++|+++.|.++..|-      .+ -.+++|+.|-|.+..+.-. .-..+
T Consensus        71 ~~v~elDL~~N~iSdWseI~--~ile~lP~l~~LNls~N~L~s~I~------~lp~p~~nl~~lVLNgT~L~w~~~~s~l  142 (418)
T KOG2982|consen   71 TDVKELDLTGNLISDWSEIG--AILEQLPALTTLNLSCNSLSSDIK------SLPLPLKNLRVLVLNGTGLSWTQSTSSL  142 (418)
T ss_pred             hhhhhhhcccchhccHHHHH--HHHhcCccceEeeccCCcCCCccc------cCcccccceEEEEEcCCCCChhhhhhhh
Confidence            46889999999984221111  236688999999999999986554      22 3567888888888777542 33446


Q ss_pred             hcCCCCCEEEcccccc
Q 036330          161 TTIISLTNLSLGYCGI  176 (187)
Q Consensus       161 ~~l~~L~~L~Ls~N~l  176 (187)
                      ..++.++.|+++.|++
T Consensus       143 ~~lP~vtelHmS~N~~  158 (418)
T KOG2982|consen  143 DDLPKVTELHMSDNSL  158 (418)
T ss_pred             hcchhhhhhhhccchh
Confidence            6778888888888854

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.86  E-value=0.0019  Score=50.02  Aligned_cols=81  Identities=23%  Similarity=0.220  Sum_probs=58.7

Q ss_pred             CEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccC-CCCCCCEEEccCCCCCCCChH--Hh
Q 036330           84 RVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIG-SLKWLKILNLYSNNVNNSLLP--SL  160 (187)
Q Consensus        84 ~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~-~l~~L~~L~Ls~N~l~G~iP~--~l  160 (187)
                      ....+||+.|.+.      ....|..++.|..|.|++|+++..-|      .+. .++.|+.|.|.+|.+. .+-+  -+
T Consensus        43 ~~d~iDLtdNdl~------~l~~lp~l~rL~tLll~nNrIt~I~p------~L~~~~p~l~~L~LtnNsi~-~l~dl~pL  109 (233)
T KOG1644|consen   43 QFDAIDLTDNDLR------KLDNLPHLPRLHTLLLNNNRITRIDP------DLDTFLPNLKTLILTNNSIQ-ELGDLDPL  109 (233)
T ss_pred             ccceecccccchh------hcccCCCccccceEEecCCcceeecc------chhhhccccceEEecCcchh-hhhhcchh
Confidence            4667899998882      11336678899999999999985444      443 4577899999999885 2222  35


Q ss_pred             hcCCCCCEEEccccccc
Q 036330          161 TTIISLTNLSLGYCGIE  177 (187)
Q Consensus       161 ~~l~~L~~L~Ls~N~l~  177 (187)
                      ..+++|++|.+-+|..+
T Consensus       110 a~~p~L~~Ltll~Npv~  126 (233)
T KOG1644|consen  110 ASCPKLEYLTLLGNPVE  126 (233)
T ss_pred             ccCCccceeeecCCchh
Confidence            67788999988888765

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=96.70  E-value=0.00096  Score=62.34  Aligned_cols=84  Identities=27%  Similarity=0.194  Sum_probs=68.2

Q ss_pred             CCCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhh
Q 036330           82 TRRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLT  161 (187)
Q Consensus        82 ~~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~  161 (187)
                      ...++.|||++|.-   ...+| +.++.|-+|++|+++...++ .+|     ..+++++.|.+||+..+..-..+|....
T Consensus       570 m~~LrVLDLs~~~~---l~~LP-~~I~~Li~LryL~L~~t~I~-~LP-----~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~  639 (889)
T KOG4658|consen  570 LPLLRVLDLSGNSS---LSKLP-SSIGELVHLRYLDLSDTGIS-HLP-----SGLGNLKKLIYLNLEVTGRLESIPGILL  639 (889)
T ss_pred             CcceEEEECCCCCc---cCcCC-hHHhhhhhhhcccccCCCcc-ccc-----hHHHHHHhhheeccccccccccccchhh
Confidence            34688899998543   22343 44788999999999999998 889     8999999999999998887666777777


Q ss_pred             cCCCCCEEEccccc
Q 036330          162 TIISLTNLSLGYCG  175 (187)
Q Consensus       162 ~l~~L~~L~Ls~N~  175 (187)
                      .|++|++|.+..-.
T Consensus       640 ~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  640 ELQSLRVLRLPRSA  653 (889)
T ss_pred             hcccccEEEeeccc
Confidence            89999999986544

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=96.68  E-value=0.00049  Score=58.97  Aligned_cols=81  Identities=30%  Similarity=0.311  Sum_probs=64.3

Q ss_pred             CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHH-hh
Q 036330           83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPS-LT  161 (187)
Q Consensus        83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~-l~  161 (187)
                      .+++.+++++|.|+.+.+      +..++.|+.|++++|.++. +      ..+..++.|+.+++++|++...-+ . ..
T Consensus       118 ~~L~~L~ls~N~I~~i~~------l~~l~~L~~L~l~~N~i~~-~------~~~~~l~~L~~l~l~~n~i~~ie~-~~~~  183 (414)
T KOG0531|consen  118 VNLQVLDLSFNKITKLEG------LSTLTLLKELNLSGNLISD-I------SGLESLKSLKLLDLSYNRIVDIEN-DELS  183 (414)
T ss_pred             hcchheeccccccccccc------hhhccchhhheeccCcchh-c------cCCccchhhhcccCCcchhhhhhh-hhhh
Confidence            468899999999943332      5567779999999999983 3      367779999999999999985333 2 57


Q ss_pred             cCCCCCEEEccccccc
Q 036330          162 TIISLTNLSLGYCGIE  177 (187)
Q Consensus       162 ~l~~L~~L~Ls~N~l~  177 (187)
                      .+.+++.+++..|.+.
T Consensus       184 ~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  184 ELISLEELDLGGNSIR  199 (414)
T ss_pred             hccchHHHhccCCchh
Confidence            8889999999999876

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.52  E-value=0.0018  Score=51.73  Aligned_cols=64  Identities=31%  Similarity=0.459  Sum_probs=47.1

Q ss_pred             CcCCCCCcEEEccCC--ccccccCCCccccccCCCCCCCEEEccCCCCCCCChHH---hhcCCCCCEEEccccccc
Q 036330          107 FLPFQELESLDLSYN--SFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPS---LTTIISLTNLSLGYCGIE  177 (187)
Q Consensus       107 l~~l~~L~~L~Ls~N--~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~---l~~l~~L~~L~Ls~N~l~  177 (187)
                      +..|++|++|+++.|  +.++.++     .-.-.+++|++|+|+.|++.-  +..   +..+.+|..|++.+|.-+
T Consensus        61 ~P~Lp~LkkL~lsdn~~~~~~~l~-----vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDNYRRVSGGLE-----VLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVT  129 (260)
T ss_pred             CCCcchhhhhcccCCcccccccce-----ehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCcc
Confidence            556789999999999  6666655     344556999999999999863  332   456677888888877654

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.27  E-value=0.0025  Score=31.31  Aligned_cols=21  Identities=38%  Similarity=0.358  Sum_probs=17.3

Q ss_pred             CCcEEEccCCccccccCCCccccccCC
Q 036330          112 ELESLDLSYNSFYGVYEKEGMYLSIGS  138 (187)
Q Consensus       112 ~L~~L~Ls~N~l~g~ip~~~~~~~~~~  138 (187)
                      +|++||+++|+|+ .+|     .+|++
T Consensus         1 ~L~~Ldls~n~l~-~ip-----~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIP-----SSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEG-----TTTTT
T ss_pred             CccEEECCCCcCE-eCC-----hhhcC
Confidence            4899999999999 898     55654

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.09  E-value=0.0034  Score=50.14  Aligned_cols=62  Identities=27%  Similarity=0.208  Sum_probs=48.1

Q ss_pred             CCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCC--CCCCCChHHhhcCCCCCEEEccccccc
Q 036330          109 PFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSN--NVNNSLLPSLTTIISLTNLSLGYCGIE  177 (187)
Q Consensus       109 ~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N--~l~G~iP~~l~~l~~L~~L~Ls~N~l~  177 (187)
                      .+..|+.|.+.+-.++. +      .++..|++|+.|+++.|  +.++.++.-...+++|++++++.|++.
T Consensus        41 ~~~~le~ls~~n~gltt-~------~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTT-L------TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             cccchhhhhhhccceee-c------ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            34556666666666652 2      46778999999999999  667777776777899999999999987

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.83  E-value=0.012  Score=45.78  Aligned_cols=60  Identities=22%  Similarity=0.206  Sum_probs=48.6

Q ss_pred             CCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEccccccc
Q 036330          111 QELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIE  177 (187)
Q Consensus       111 ~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~  177 (187)
                      .....+||++|.+. .+      ..+..++.|.+|.|++|+++..-|.--.-+++|..|.|.+|++.
T Consensus        42 d~~d~iDLtdNdl~-~l------~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~  101 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLR-KL------DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ  101 (233)
T ss_pred             cccceecccccchh-hc------ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh
Confidence            46789999999987 34      37889999999999999999544443334578999999999887

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.54  E-value=0.0076  Score=27.69  Aligned_cols=13  Identities=31%  Similarity=0.465  Sum_probs=4.8

Q ss_pred             CCCEEEccCCCCC
Q 036330          141 WLKILNLYSNNVN  153 (187)
Q Consensus       141 ~L~~L~Ls~N~l~  153 (187)
                      +|+.|+|++|+|+
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            3444555555443

...

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=95.32  E-value=0.0022  Score=54.81  Aligned_cols=41  Identities=24%  Similarity=0.242  Sum_probs=23.6

Q ss_pred             CEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccc
Q 036330           84 RVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGV  126 (187)
Q Consensus        84 ~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~  126 (187)
                      +|+.|||+.|-+.....  .......|++|+.|+|+.|++.-.
T Consensus       147 ~v~~LdLS~NL~~nw~~--v~~i~eqLp~Le~LNls~Nrl~~~  187 (505)
T KOG3207|consen  147 NVRDLDLSRNLFHNWFP--VLKIAEQLPSLENLNLSSNRLSNF  187 (505)
T ss_pred             cceeecchhhhHHhHHH--HHHHHHhcccchhcccccccccCC
Confidence            46777777766521111  112244677788888888777533

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=95.13  E-value=0.014  Score=29.68  Aligned_cols=18  Identities=22%  Similarity=0.324  Sum_probs=8.9

Q ss_pred             CCCCEEEcccccccccCCC
Q 036330          164 ISLTNLSLGYCGIEGFIPN  182 (187)
Q Consensus       164 ~~L~~L~Ls~N~l~G~iP~  182 (187)
                      ++|+.|+|++|+++ .||.
T Consensus         2 ~~L~~L~L~~N~l~-~lp~   19 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPP   19 (26)
T ss_pred             CCCCEEECCCCcCC-cCCH
Confidence            34455555555555 4443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=95.13  E-value=0.014  Score=29.68  Aligned_cols=18  Identities=22%  Similarity=0.324  Sum_probs=8.9

Q ss_pred             CCCCEEEcccccccccCCC
Q 036330          164 ISLTNLSLGYCGIEGFIPN  182 (187)
Q Consensus       164 ~~L~~L~Ls~N~l~G~iP~  182 (187)
                      ++|+.|+|++|+++ .||.
T Consensus         2 ~~L~~L~L~~N~l~-~lp~   19 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPP   19 (26)
T ss_pred             CCCCEEECCCCcCC-cCCH
Confidence            34455555555555 4443

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=95.10  E-value=0.00032  Score=55.54  Aligned_cols=84  Identities=18%  Similarity=-0.009  Sum_probs=69.0

Q ss_pred             CCCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhh
Q 036330           82 TRRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLT  161 (187)
Q Consensus        82 ~~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~  161 (187)
                      ..+|+.||++.+.+...+     ..+.-++.+..||++.|.+. .+|     ..++.+..+..+++..|.++ ..|.+++
T Consensus        41 ~kr~tvld~~s~r~vn~~-----~n~s~~t~~~rl~~sknq~~-~~~-----~d~~q~~e~~~~~~~~n~~~-~~p~s~~  108 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLVNLG-----KNFSILTRLVRLDLSKNQIK-FLP-----KDAKQQRETVNAASHKNNHS-QQPKSQK  108 (326)
T ss_pred             cceeeeehhhhhHHHhhc-----cchHHHHHHHHHhccHhhHh-hCh-----hhHHHHHHHHHHHhhccchh-hCCcccc
Confidence            368999999999873222     23556788999999999887 677     78888889999999999988 7899999


Q ss_pred             cCCCCCEEEccccccc
Q 036330          162 TIISLTNLSLGYCGIE  177 (187)
Q Consensus       162 ~l~~L~~L~Ls~N~l~  177 (187)
                      ..+.++++++-.|.|.
T Consensus       109 k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  109 KEPHPKKNEQKKTEFF  124 (326)
T ss_pred             ccCCcchhhhccCcch
Confidence            9999999998888765

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=95.06  E-value=0.011  Score=49.34  Aligned_cols=89  Identities=24%  Similarity=0.190  Sum_probs=43.0

Q ss_pred             CEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccc----cCCCccccccCCCCCCCEEEccCCCCCCC----
Q 036330           84 RVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGV----YEKEGMYLSIGSLKWLKILNLYSNNVNNS----  155 (187)
Q Consensus        84 ~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~----ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~----  155 (187)
                      .+..+.++.|++...+...-...+..+++|++|||..|-|+-.    +.     ..++.+++|+.|+++++.++..    
T Consensus       186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La-----kaL~s~~~L~El~l~dcll~~~Ga~a  260 (382)
T KOG1909|consen  186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA-----KALSSWPHLRELNLGDCLLENEGAIA  260 (382)
T ss_pred             ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH-----HHhcccchheeecccccccccccHHH
Confidence            3455566666652111111112255677888888888877522    11     2234445556666655555321    


Q ss_pred             ChHHhh-cCCCCCEEEccccccc
Q 036330          156 LLPSLT-TIISLTNLSLGYCGIE  177 (187)
Q Consensus       156 iP~~l~-~l~~L~~L~Ls~N~l~  177 (187)
                      +-+.+. ..++|++|.+.+|.++
T Consensus       261 ~~~al~~~~p~L~vl~l~gNeIt  283 (382)
T KOG1909|consen  261 FVDALKESAPSLEVLELAGNEIT  283 (382)
T ss_pred             HHHHHhccCCCCceeccCcchhH
Confidence            111121 1345555555555543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=95.02  E-value=0.014  Score=53.43  Aligned_cols=46  Identities=17%  Similarity=0.220  Sum_probs=31.5

Q ss_pred             cccCCCCCCCEEEccCCCCCCC--ChHH----hhcCCCCCEEEccccccccc
Q 036330          134 LSIGSLKWLKILNLYSNNVNNS--LLPS----LTTIISLTNLSLGYCGIEGF  179 (187)
Q Consensus       134 ~~~~~l~~L~~L~Ls~N~l~G~--iP~~----l~~l~~L~~L~Ls~N~l~G~  179 (187)
                      .++.+|++|++||+|..+....  +...    -..|++|+.||.|++.+++.
T Consensus       214 ~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~  265 (699)
T KOG3665|consen  214 IDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE  265 (699)
T ss_pred             HHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence            3577888999999988776532  2221    12478899999888776643

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=95.02  E-value=0.012  Score=50.50  Aligned_cols=14  Identities=50%  Similarity=0.731  Sum_probs=7.2

Q ss_pred             CCCCcEEEccCCcc
Q 036330          110 FQELESLDLSYNSF  123 (187)
Q Consensus       110 l~~L~~L~Ls~N~l  123 (187)
                      ++.|+.|||++|++
T Consensus       245 ~~~L~~LdLs~N~l  258 (505)
T KOG3207|consen  245 LQTLQELDLSNNNL  258 (505)
T ss_pred             hhHHhhccccCCcc
Confidence            34455555555544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.40  E-value=0.0024  Score=51.93  Aligned_cols=79  Identities=19%  Similarity=0.128  Sum_probs=56.8

Q ss_pred             CCCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHH--
Q 036330           82 TRRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPS--  159 (187)
Q Consensus        82 ~~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~--  159 (187)
                      ...+..|.|+-|.++..      ..+..++.|+.|.|..|.|.. +.   ...-+.++++|+.|+|..|.-.|.-+..  
T Consensus        40 Mp~lEVLsLSvNkIssL------~pl~rCtrLkElYLRkN~I~s-ld---EL~YLknlpsLr~LWL~ENPCc~~ag~nYR  109 (388)
T KOG2123|consen   40 MPLLEVLSLSVNKISSL------APLQRCTRLKELYLRKNCIES-LD---ELEYLKNLPSLRTLWLDENPCCGEAGQNYR  109 (388)
T ss_pred             cccceeEEeeccccccc------hhHHHHHHHHHHHHHhccccc-HH---HHHHHhcCchhhhHhhccCCcccccchhHH
Confidence            45677888888888322      226678899999999998763 21   0134578899999999999988877654  


Q ss_pred             ---hhcCCCCCEEE
Q 036330          160 ---LTTIISLTNLS  170 (187)
Q Consensus       160 ---l~~l~~L~~L~  170 (187)
                         +.-|++|+.||
T Consensus       110 ~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen  110 RKVLRVLPNLKKLD  123 (388)
T ss_pred             HHHHHHcccchhcc
Confidence               44577777776

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.13  E-value=0.052  Score=27.44  Aligned_cols=20  Identities=40%  Similarity=0.536  Sum_probs=14.4

Q ss_pred             CCCCCEEEccCCCCCCCChHH
Q 036330          139 LKWLKILNLYSNNVNNSLLPS  159 (187)
Q Consensus       139 l~~L~~L~Ls~N~l~G~iP~~  159 (187)
                      +++|++|+|++|+++ .+|+.
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~   20 (26)
T smart00370        1 LPNLRELDLSNNQLS-SLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHH
Confidence            456788888888887 56654

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.13  E-value=0.052  Score=27.44  Aligned_cols=20  Identities=40%  Similarity=0.536  Sum_probs=14.4

Q ss_pred             CCCCCEEEccCCCCCCCChHH
Q 036330          139 LKWLKILNLYSNNVNNSLLPS  159 (187)
Q Consensus       139 l~~L~~L~Ls~N~l~G~iP~~  159 (187)
                      +++|++|+|++|+++ .+|+.
T Consensus         1 L~~L~~L~L~~N~l~-~lp~~   20 (26)
T smart00369        1 LPNLRELDLSNNQLS-SLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCC-cCCHH
Confidence            456788888888887 56654

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=93.73  E-value=0.029  Score=45.68  Aligned_cols=13  Identities=31%  Similarity=0.506  Sum_probs=10.3

Q ss_pred             CCEEEEEcCCCCC
Q 036330           83 RRVKELSLDGITL   95 (187)
Q Consensus        83 ~~v~~L~L~~~~l   95 (187)
                      ..+++++|+||.+
T Consensus        30 d~~~evdLSGNti   42 (388)
T COG5238          30 DELVEVDLSGNTI   42 (388)
T ss_pred             cceeEEeccCCcc
Confidence            4678888888887

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=93.55  E-value=0.042  Score=50.32  Aligned_cols=84  Identities=20%  Similarity=0.254  Sum_probs=57.2

Q ss_pred             CEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCC-CChHHhhc
Q 036330           84 RVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNN-SLLPSLTT  162 (187)
Q Consensus        84 ~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G-~iP~~l~~  162 (187)
                      .+++|.+.+..+.  ...+ .....++++|..||+|+.+++- +      ..++.+++|+.|.+.+=.+.- ..-..+.+
T Consensus       149 sL~sL~i~~~~~~--~~dF-~~lc~sFpNL~sLDIS~TnI~n-l------~GIS~LknLq~L~mrnLe~e~~~~l~~LF~  218 (699)
T KOG3665|consen  149 SLRSLVISGRQFD--NDDF-SQLCASFPNLRSLDISGTNISN-L------SGISRLKNLQVLSMRNLEFESYQDLIDLFN  218 (699)
T ss_pred             ccceEEecCceec--chhH-HHHhhccCccceeecCCCCccC-c------HHHhccccHHHHhccCCCCCchhhHHHHhc
Confidence            4666666665551  1110 1225578999999999988772 2      368889999998887766642 23346778


Q ss_pred             CCCCCEEEccccccc
Q 036330          163 IISLTNLSLGYCGIE  177 (187)
Q Consensus       163 l~~L~~L~Ls~N~l~  177 (187)
                      |++|++||+|.....
T Consensus       219 L~~L~vLDIS~~~~~  233 (699)
T KOG3665|consen  219 LKKLRVLDISRDKNN  233 (699)
T ss_pred             ccCCCeeeccccccc
Confidence            999999999976544

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.29  E-value=0.049  Score=44.94  Aligned_cols=64  Identities=22%  Similarity=0.244  Sum_probs=46.8

Q ss_pred             CCCCCcEEEccCCcccc--ccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEccccccc
Q 036330          109 PFQELESLDLSYNSFYG--VYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIE  177 (187)
Q Consensus       109 ~l~~L~~L~Ls~N~l~g--~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~  177 (187)
                      ..++++.+||.+|.++.  .|-     .-+.++|.|+.|+|+.|+++..|-..=..+.+|++|-|.+..+.
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~-----~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~  134 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIG-----AILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLS  134 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHH-----HHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCC
Confidence            46789999999999873  222     33568999999999999998654322135568888888776654

>PRK15386 type III secretion protein GogB; Provisional

Probab=92.29  E-value=0.33  Score=41.84  Aligned_cols=31  Identities=29%  Similarity=0.174  Sum_probs=15.7

Q ss_pred             CCCEEEccCCCCCCCChHHhhcCCCCCEEEcccc
Q 036330          141 WLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYC  174 (187)
Q Consensus       141 ~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N  174 (187)
                      +|++|+++++... .+|..+.  .+|+.|+++.|
T Consensus       157 SLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        157 SLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             cccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence            5556666555543 2333222  35666666554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.28  E-value=0.0089  Score=48.72  Aligned_cols=85  Identities=28%  Similarity=0.219  Sum_probs=64.8

Q ss_pred             CEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChH--Hhh
Q 036330           84 RVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLP--SLT  161 (187)
Q Consensus        84 ~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~--~l~  161 (187)
                      .|..|++=|.+++.      .+....++.|++|.||-|.++..-       .+..+++|+.|+|..|.+.. +-+  -+.
T Consensus        20 ~vkKLNcwg~~L~D------Isic~kMp~lEVLsLSvNkIssL~-------pl~rCtrLkElYLRkN~I~s-ldEL~YLk   85 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDD------ISICEKMPLLEVLSLSVNKISSLA-------PLQRCTRLKELYLRKNCIES-LDELEYLK   85 (388)
T ss_pred             HhhhhcccCCCccH------HHHHHhcccceeEEeeccccccch-------hHHHHHHHHHHHHHhccccc-HHHHHHHh
Confidence            45566666665521      133567889999999999998543       48899999999999999873 332  467


Q ss_pred             cCCCCCEEEcccccccccCCC
Q 036330          162 TIISLTNLSLGYCGIEGFIPN  182 (187)
Q Consensus       162 ~l~~L~~L~Ls~N~l~G~iP~  182 (187)
                      ++++|+.|.|..|.-.|.-+.
T Consensus        86 nlpsLr~LWL~ENPCc~~ag~  106 (388)
T KOG2123|consen   86 NLPSLRTLWLDENPCCGEAGQ  106 (388)
T ss_pred             cCchhhhHhhccCCcccccch
Confidence            899999999999998876554

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=91.76  E-value=0.032  Score=27.71  Aligned_cols=9  Identities=33%  Similarity=0.530  Sum_probs=2.9

Q ss_pred             CEEEccCCC
Q 036330          143 KILNLYSNN  151 (187)
Q Consensus       143 ~~L~Ls~N~  151 (187)
                      ++|+|++|+
T Consensus         5 ~~L~l~~n~   13 (24)
T PF13516_consen    5 ETLDLSNNQ   13 (24)
T ss_dssp             SEEE-TSSB
T ss_pred             CEEEccCCc
Confidence            333333333

...

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=91.19  E-value=0.09  Score=43.99  Aligned_cols=43  Identities=28%  Similarity=0.434  Sum_probs=29.8

Q ss_pred             ccCCCCCCCEEEccCCCCCCC----ChHHhhcCCCCCEEEccccccc
Q 036330          135 SIGSLKWLKILNLYSNNVNNS----LLPSLTTIISLTNLSLGYCGIE  177 (187)
Q Consensus       135 ~~~~l~~L~~L~Ls~N~l~G~----iP~~l~~l~~L~~L~Ls~N~l~  177 (187)
                      .+..+++|+.|||.+|.|+-.    +-..+..+++|+.|+++++.++
T Consensus       208 al~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~  254 (382)
T KOG1909|consen  208 ALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE  254 (382)
T ss_pred             HHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence            456678888888888887532    3344566677888888777665

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=90.72  E-value=0.15  Score=26.06  Aligned_cols=17  Identities=24%  Similarity=0.419  Sum_probs=10.7

Q ss_pred             CCCEEEcccccccccCCC
Q 036330          165 SLTNLSLGYCGIEGFIPN  182 (187)
Q Consensus       165 ~L~~L~Ls~N~l~G~iP~  182 (187)
                      +|+.|++++|+|+ ++|+
T Consensus         3 ~L~~L~vs~N~Lt-~LPe   19 (26)
T smart00364        3 SLKELNVSNNQLT-SLPE   19 (26)
T ss_pred             ccceeecCCCccc-cCcc
Confidence            4666666666666 5664

>PRK15386 type III secretion protein GogB; Provisional

Probab=88.65  E-value=0.94  Score=39.11  Aligned_cols=50  Identities=18%  Similarity=0.163  Sum_probs=24.4

Q ss_pred             EEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccC-CccccccCCCccccccCCCCCCCEEEccCC
Q 036330           85 VKELSLDGITLGANSGFLNLSMFLPFQELESLDLSY-NSFYGVYEKEGMYLSIGSLKWLKILNLYSN  150 (187)
Q Consensus        85 v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~-N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N  150 (187)
                      .+.|+++++.++..+ .+       -.+|+.|++++ +.++ .+|     ..+  .++|++|++++|
T Consensus        54 l~~L~Is~c~L~sLP-~L-------P~sLtsL~Lsnc~nLt-sLP-----~~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         54 SGRLYIKDCDIESLP-VL-------PNELTEITIENCNNLT-TLP-----GSI--PEGLEKLTVCHC  104 (426)
T ss_pred             CCEEEeCCCCCcccC-CC-------CCCCcEEEccCCCCcc-cCC-----chh--hhhhhheEccCc
Confidence            556777777663221 11       12466666665 2332 344     222  135566666555

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=87.50  E-value=0.26  Score=40.84  Aligned_cols=58  Identities=21%  Similarity=0.111  Sum_probs=42.1

Q ss_pred             CCCCCcEEEccCC-ccccccCCCccccccCCCCCCCEEEccCCCCCCCChHH---hhcCCCCCEEEccc
Q 036330          109 PFQELESLDLSYN-SFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPS---LTTIISLTNLSLGY  173 (187)
Q Consensus       109 ~l~~L~~L~Ls~N-~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~---l~~l~~L~~L~Ls~  173 (187)
                      .+++|..||||.| .++...-     .++..++.|++|.++.+.  +.+|..   +...++|.+||+.+
T Consensus       311 rcp~l~~LDLSD~v~l~~~~~-----~~~~kf~~L~~lSlsRCY--~i~p~~~~~l~s~psl~yLdv~g  372 (419)
T KOG2120|consen  311 RCPNLVHLDLSDSVMLKNDCF-----QEFFKFNYLQHLSLSRCY--DIIPETLLELNSKPSLVYLDVFG  372 (419)
T ss_pred             hCCceeeeccccccccCchHH-----HHHHhcchheeeehhhhc--CCChHHeeeeccCcceEEEEecc
Confidence            5788999999986 4543333     467788999999887765  456764   56678899998754

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=87.40  E-value=0.014  Score=46.49  Aligned_cols=70  Identities=20%  Similarity=0.171  Sum_probs=58.0

Q ss_pred             cCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccccCCCC
Q 036330          106 MFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPNQ  183 (187)
Q Consensus       106 ~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~  183 (187)
                      .+..+...+.||++.|++... -     ..++.++.|..||++.|++. -+|..++++..++.+++..|..+ ..|.+
T Consensus        37 ei~~~kr~tvld~~s~r~vn~-~-----~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s  106 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLVNL-G-----KNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKS  106 (326)
T ss_pred             hhhccceeeeehhhhhHHHhh-c-----cchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCcc
Confidence            355678889999999998633 2     57778899999999999998 79999999999999999999887 55543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=86.68  E-value=1.3  Score=30.73  Aligned_cols=76  Identities=16%  Similarity=0.228  Sum_probs=32.9

Q ss_pred             CEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChH-Hhhc
Q 036330           84 RVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLP-SLTT  162 (187)
Q Consensus        84 ~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~-~l~~  162 (187)
                      .++.+.+..+ +.    .+....|..++.|+.+.+.+ .+. .++.    ..+..+++|+.+++..+ +. .++. .+.+
T Consensus        36 ~l~~i~~~~~-~~----~i~~~~F~~~~~l~~i~~~~-~~~-~i~~----~~F~~~~~l~~i~~~~~-~~-~i~~~~f~~  102 (129)
T PF13306_consen   36 SLKSINFPNN-LT----SIGDNAFSNCKSLESITFPN-NLK-SIGD----NAFSNCTNLKNIDIPSN-IT-EIGSSSFSN  102 (129)
T ss_dssp             T-SEEEESST-TS----CE-TTTTTT-TT-EEEEETS-TT--EE-T----TTTTT-TTECEEEETTT--B-EEHTTTTTT
T ss_pred             cccccccccc-cc----ccceeeeecccccccccccc-ccc-cccc----ccccccccccccccCcc-cc-EEchhhhcC
Confidence            4556665553 32    12223355566677777754 222 2221    34556677777777554 33 2333 3555


Q ss_pred             CCCCCEEEccc
Q 036330          163 IISLTNLSLGY  173 (187)
Q Consensus       163 l~~L~~L~Ls~  173 (187)
                      + +|+.+.+..
T Consensus       103 ~-~l~~i~~~~  112 (129)
T PF13306_consen  103 C-NLKEINIPS  112 (129)
T ss_dssp             --T--EEE-TT
T ss_pred             C-CceEEEECC
Confidence            5 667666654

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=85.97  E-value=1.3  Score=36.40  Aligned_cols=69  Identities=28%  Similarity=0.272  Sum_probs=36.3

Q ss_pred             CcCCCCCcEEEccCCccccccCCC-ccccccCCCCCCCEEEccCCCCC----CCChHHhh---------cCCCCCEEEcc
Q 036330          107 FLPFQELESLDLSYNSFYGVYEKE-GMYLSIGSLKWLKILNLYSNNVN----NSLLPSLT---------TIISLTNLSLG  172 (187)
Q Consensus       107 l~~l~~L~~L~Ls~N~l~g~ip~~-~~~~~~~~l~~L~~L~Ls~N~l~----G~iP~~l~---------~l~~L~~L~Ls  172 (187)
                      +..+++|+..+||.|.|....|.. +  .-++.-+.|.+|.|++|.+.    |.|-..+.         +-+.|++....
T Consensus        88 Llkcp~l~~v~LSDNAfg~~~~e~L~--d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg  165 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSEFPEELG--DLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG  165 (388)
T ss_pred             HhcCCcceeeeccccccCcccchHHH--HHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence            445667777777777766555510 0  12344456666666666652    12222211         23556666666


Q ss_pred             ccccc
Q 036330          173 YCGIE  177 (187)
Q Consensus       173 ~N~l~  177 (187)
                      .|+|.
T Consensus       166 rNRle  170 (388)
T COG5238         166 RNRLE  170 (388)
T ss_pred             cchhc
Confidence            66654

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=85.71  E-value=0.71  Score=23.57  Aligned_cols=14  Identities=29%  Similarity=0.382  Sum_probs=8.7

Q ss_pred             CCCCEEEccCCCCC
Q 036330          140 KWLKILNLYSNNVN  153 (187)
Q Consensus       140 ~~L~~L~Ls~N~l~  153 (187)
                      ++|+.|+|+.|+++
T Consensus         2 ~~L~~L~L~~NkI~   15 (26)
T smart00365        2 TNLEELDLSQNKIK   15 (26)
T ss_pred             CccCEEECCCCccc
Confidence            45666666666664

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=83.00  E-value=1  Score=23.16  Aligned_cols=14  Identities=29%  Similarity=0.384  Sum_probs=9.2

Q ss_pred             CCCCEEEccCCCCC
Q 036330          140 KWLKILNLYSNNVN  153 (187)
Q Consensus       140 ~~L~~L~Ls~N~l~  153 (187)
                      ++|++|||++|.+.
T Consensus         2 ~~L~~LdL~~N~i~   15 (28)
T smart00368        2 PSLRELDLSNNKLG   15 (28)
T ss_pred             CccCEEECCCCCCC
Confidence            35677777777764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	187
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-21
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-14
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 88.4 bits (220), Expect = 5e-21
 Identities = 40/176 (22%), Positives = 54/176 (30%), Gaps = 38/176 (21%)

Query: 29  GCLETERTALLEIKRFFIAVRDTGYKDEILTSWVDDEMSDCCRWEQVKCVNATTRRVKEL 88
             L  E   L+  K              +L  W  +   + C ++ V C      +V  +
Sbjct: 8   QSLYREIHQLISFKDVLP-------DKNLLPDWSSN--KNPCTFDGVTC---RDDKVTSI 55

Query: 89  SLDGITLGANSG-------------FLNLSM---------FLPFQELESLDLSYNSFYGV 126
            L    L                   L LS          F     L SLDLS NS  G 
Sbjct: 56  DLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGP 115

Query: 127 YEKEGMYLSIGSLKWLKILNLYSNNVNNSL-LPSLTTIISLTNLSLGYCGIEGFIP 181
                   S+GS   LK LN+ SN ++    +     + SL  L L    I G   
Sbjct: 116 VTTL---TSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANV 168

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 51.8 bits (125), Expect = 2e-08
 Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 8/97 (8%)

Query: 89  SLDGITLGAN--SGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILN 146
           SL  ++L  N  +G +   +      L  LDLS N FYG           GS   L+ L 
Sbjct: 270 SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP-----FFGSCSLLESLA 324

Query: 147 LYSNNVNNSLLP-SLTTIISLTNLSLGYCGIEGFIPN 182
           L SNN +  L   +L  +  L  L L +    G +P 
Sbjct: 325 LSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE 361

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 50.7 bits (122), Expect = 5e-08
 Identities = 23/103 (22%), Positives = 45/103 (43%), Gaps = 14/103 (13%)

Query: 84  RVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYL-SIGSLKWL 142
            +K L++ G  +   SG +++S       LE LD+S N+F          +  +G    L
Sbjct: 179 ELKHLAISGNKI---SGDVDVSRC---VNLEFLDVSSNNFSTG-------IPFLGDCSAL 225

Query: 143 KILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPNQGM 185
           + L++  N ++     +++T   L  L++      G IP   +
Sbjct: 226 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPL 268

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 50.3 bits (121), Expect = 8e-08
 Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 7/84 (8%)

Query: 103 NLSMFLP---FQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPS 159
                +P    + L+ L L+ N F G           G+   L  L+L  N+   ++ P 
Sbjct: 258 QFVGPIPPLPLKSLQYLSLAENKFTGEIPDF----LSGACDTLTGLDLSGNHFYGAVPPF 313

Query: 160 LTTIISLTNLSLGYCGIEGFIPNQ 183
             +   L +L+L      G +P  
Sbjct: 314 FGSCSLLESLALSSNNFSGELPMD 337

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 49.5 bits (119), Expect = 1e-07
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 5/70 (7%)

Query: 113 LESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLG 172
           L SL LS+N   G      +  S+GSL  L+ L L+ N +   +   L  + +L  L L 
Sbjct: 420 LVSLHLSFNYLSGT-----IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474

Query: 173 YCGIEGFIPN 182
           +  + G IP+
Sbjct: 475 FNDLTGEIPS 484

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 5/76 (6%)

Query: 111 QELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLS 170
             L  L+L +N   G      +   +G L+ L IL+L SN ++  +  +++ +  LT + 
Sbjct: 656 PYLFILNLGHNDISG-----SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 710

Query: 171 LGYCGIEGFIPNQGMF 186
           L    + G IP  G F
Sbjct: 711 LSNNNLSGPIPEMGQF 726

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.7 bits (104), Expect = 1e-05
 Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 5/73 (6%)

Query: 110 FQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNL 169
             +L  L L  N   G      +   +  +K L+ L L  N++   +   L+   +L  +
Sbjct: 441 LSKLRDLKLWLNMLEGE-----IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWI 495

Query: 170 SLGYCGIEGFIPN 182
           SL    + G IP 
Sbjct: 496 SLSNNRLTGEIPK 508

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.4 bits (103), Expect = 1e-05
 Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 5/96 (5%)

Query: 89  SLDGITLGAN--SGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILN 146
            L  + L  N  SG L  S+      L +LDLS N+F G        L       L+ L 
Sbjct: 344 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN---LCQNPKNTLQELY 400

Query: 147 LYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPN 182
           L +N     + P+L+    L +L L +  + G IP+
Sbjct: 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 436

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 89  SLDGITLGAN--SGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKW-LKIL 145
            L+ + L +N  SG L +   L  + L+ LDLS+N F G      +  S+ +L   L  L
Sbjct: 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG-----ELPESLTNLSASLLTL 373

Query: 146 NLYSNNVNNSLLPSL--TTIISLTNLSLGYCGIEGFIP 181
           +L SNN +  +LP+L      +L  L L   G  G IP
Sbjct: 374 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 411

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 9/75 (12%)

Query: 111 QELESLDLSYNSFYGVYEKEGMYL--SIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTN 168
           + LE+L L +N   G        +   + +   L  ++L +N +   +   +  + +L  
Sbjct: 466 KTLETLILDFNDLTGE-------IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI 518

Query: 169 LSLGYCGIEGFIPNQ 183
           L L      G IP +
Sbjct: 519 LKLSNNSFSGNIPAE 533

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 113 LESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLG 172
           L  + LS N   G   K      IG L+ L IL L +N+ + ++   L    SL  L L 
Sbjct: 492 LNWISLSNNRLTGEIPK-----WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 546

Query: 173 YCGIEGFIP 181
                G IP
Sbjct: 547 TNLFNGTIP 555

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 68.7 bits (169), Expect = 2e-14
 Identities = 41/157 (26%), Positives = 61/157 (38%), Gaps = 22/157 (14%)

Query: 30  CLETERTALLEIKRFFIAVRDTGYKDEILTSWVDDEMSDCCR--WEQVKCVNAT-TRRVK 86
           C   ++ ALL+IK+              L+SW+    +DCC   W  V C   T T RV 
Sbjct: 3   CNPQDKQALLQIKKDLG-------NPTTLSSWLPT--TDCCNRTWLGVLCDTDTQTYRVN 53

Query: 87  ELSLDGITLGANSGFLNLSMFLP-FQELESLDLS-YNSFYGVYEKEGMYLSIGSLKWLKI 144
            L L G+ L        +   L     L  L +   N+  G         +I  L  L  
Sbjct: 54  NLDLSGLNL---PKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP-----AIAKLTQLHY 105

Query: 145 LNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIP 181
           L +   NV+ ++   L+ I +L  L   Y  + G +P
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP 142

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 47.5 bits (114), Expect = 5e-07
 Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 17/105 (16%)

Query: 88  LSLDGITLGANSGFLNLSMFLPF-----QELESLDLSYNSFYGVYEKEGMYL-SIGSLKW 141
           L+L  + L  N     L           +  + + L+ NS           L  +G  K 
Sbjct: 197 LNLAFVDLSRN----MLEGDASVLFGSDKNTQKIHLAKNSLAFD-------LGKVGLSKN 245

Query: 142 LKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPNQGMF 186
           L  L+L +N +  +L   LT +  L +L++ +  + G IP  G  
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNL 290

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.8 bits (122), Expect = 5e-08
 Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 6/85 (7%)

Query: 99  SGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLP 158
                 S+FL  + L  LD+S+      +           L  L++L +  N+   + LP
Sbjct: 409 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNG-----IFNGLSSLEVLKMAGNSFQENFLP 463

Query: 159 -SLTTIISLTNLSLGYCGIEGFIPN 182
              T + +LT L L  C +E   P 
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLSPT 488

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 48.1 bits (115), Expect = 5e-07
 Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 5/81 (6%)

Query: 102 LNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLT 161
           L    F  F EL+ LDLS      + +      +  SL  L  L L  N + +  L + +
Sbjct: 43  LGSYSFFSFPELQVLDLSRCEIQTIEDG-----AYQSLSHLSTLILTGNPIQSLALGAFS 97

Query: 162 TIISLTNLSLGYCGIEGFIPN 182
            + SL  L      +      
Sbjct: 98  GLSSLQKLVAVETNLASLENF 118

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.4 bits (108), Expect = 4e-06
 Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 8/98 (8%)

Query: 86  KELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKIL 145
           + L + G +           +F   + L  LDLS      +        +  SL  L++L
Sbjct: 448 EVLKMAGNSF---QENFLPDIFTELRNLTFLDLSQCQLEQLSPT-----AFNSLSSLQVL 499

Query: 146 NLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPNQ 183
           N+  NN  +        + SL  L      I      +
Sbjct: 500 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 537

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.0 bits (107), Expect = 4e-06
 Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 6/82 (7%)

Query: 102 LNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLP-SL 160
           L L  F     L+ L     +   +         IG LK LK LN+  N + +  LP   
Sbjct: 91  LALGAFSGLSSLQKLVAVETNLASLEN-----FPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 161 TTIISLTNLSLGYCGIEGFIPN 182
           + + +L +L L    I+     
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCT 167

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 44.2 bits (105), Expect = 9e-06
 Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 5/75 (6%)

Query: 107 FLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISL 166
           +     L +L L+ N    +        +   L  L+ L     N+ +     +  + +L
Sbjct: 72  YQSLSHLSTLILTGNPIQSLALG-----AFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126

Query: 167 TNLSLGYCGIEGFIP 181
             L++ +  I+ F  
Sbjct: 127 KELNVAHNLIQSFKL 141

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 4/75 (5%)

Query: 107 FLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISL 166
           FL  ++LE LD  +++   + E         SL+ L  L++   +   +       + SL
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSEFS----VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447

Query: 167 TNLSLGYCGIEGFIP 181
             L +     +    
Sbjct: 448 EVLKMAGNSFQENFL 462

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.1 bits (115), Expect = 5e-07
 Identities = 19/98 (19%), Positives = 34/98 (34%), Gaps = 9/98 (9%)

Query: 89  SLDGITLGAN--SGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILN 146
            L+ + LG N     L    +   + +  + LSYN +  +        S   +  L+ L 
Sbjct: 406 HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRN-----SFALVPSLQRLM 460

Query: 147 LYSNNVN--NSLLPSLTTIISLTNLSLGYCGIEGFIPN 182
           L    +   +S       + +LT L L    I     +
Sbjct: 461 LRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD 498

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 8/79 (10%)

Query: 107 FLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTII-- 164
                 L+ L+LS N                ++  L  L L +  +  SL   L   +  
Sbjct: 167 IFANSSLKKLELSSNQIKEFSPG-----CFHAIGRLFGLFLNNVQLGPSLTEKLCLELAN 221

Query: 165 -SLTNLSLGYCGIEGFIPN 182
            S+ NLSL    +      
Sbjct: 222 TSIRNLSLSNSQLSTTSNT 240

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 6/101 (5%)

Query: 83  RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWL 142
             +K LSL        +      + L    L  L+L+ N    +        +   L  L
Sbjct: 353 INLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESD-----AFSWLGHL 407

Query: 143 KILNLYSNNVNNSLLPS-LTTIISLTNLSLGYCGIEGFIPN 182
           ++L+L  N +   L       + ++  + L Y        N
Sbjct: 408 EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRN 448

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.0 bits (107), Expect = 5e-06
 Identities = 19/81 (23%), Positives = 28/81 (34%), Gaps = 3/81 (3%)

Query: 102 LNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLT 161
             L   +  + L+ L LS N    +  +E   L I +   LK L L SN +         
Sbjct: 136 TKLGTQVQLENLQELLLSNNKIQALKSEE---LDIFANSSLKKLELSSNQIKEFSPGCFH 192

Query: 162 TIISLTNLSLGYCGIEGFIPN 182
            I  L  L L    +   +  
Sbjct: 193 AIGRLFGLFLNNVQLGPSLTE 213

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 44.6 bits (106), Expect = 6e-06
 Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 13/102 (12%)

Query: 83  RRVKELSLDG--ITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLK 140
             +  L+L    +     + F   S      +L SLD+ +N+   +  +         L 
Sbjct: 25  TNITVLNLTHNQLRRLPAANFTRYS------QLTSLDVGFNTISKLEPE-----LCQKLP 73

Query: 141 WLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPN 182
            LK+LNL  N ++     +     +LT L L    I+    N
Sbjct: 74  MLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNN 115

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 44.6 bits (106), Expect = 7e-06
 Identities = 17/81 (20%), Positives = 28/81 (34%), Gaps = 5/81 (6%)

Query: 102 LNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLT 161
           L+   F     L  L L  NS   +             K L  L+L  N ++++ L +  
Sbjct: 88  LSDKTFAFCTNLTELHLMSNSIQKIKNN-----PFVKQKNLITLDLSHNGLSSTKLGTQV 142

Query: 162 TIISLTNLSLGYCGIEGFIPN 182
            + +L  L L    I+     
Sbjct: 143 QLENLQELLLSNNKIQALKSE 163

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 25/102 (24%), Positives = 39/102 (38%), Gaps = 8/102 (7%)

Query: 83  RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKW- 141
            R+  L L+ + LG  S    L + L    + +L LS +             +   LKW 
Sbjct: 195 GRLFGLFLNNVQLG-PSLTEKLCLELANTSIRNLSLSNSQLSTTSNT-----TFLGLKWT 248

Query: 142 -LKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPN 182
            L +L+L  NN+N     S   +  L    L Y  I+    +
Sbjct: 249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH 290

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 22/94 (23%), Positives = 34/94 (36%), Gaps = 6/94 (6%)

Query: 89  SLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLY 148
           +L  +   AN G   +        L  L+L  N F  +  +         L  LKI++L 
Sbjct: 515 NLARLWKHANPG-GPIYFLKGLSHLHILNLESNGFDEIPVE-----VFKDLFELKIIDLG 568

Query: 149 SNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPN 182
            NN+N          +SL +L+L    I      
Sbjct: 569 LNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKK 602

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 19/96 (19%), Positives = 28/96 (29%), Gaps = 14/96 (14%)

Query: 101 FLNLS----------MFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSN 150
            LNL+           F     LE LDL  N        +        L+ +  + L  N
Sbjct: 385 ILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ----EWRGLENIFEIYLSYN 440

Query: 151 NVNNSLLPSLTTIISLTNLSLGYCGIEGFIPNQGMF 186
                   S   + SL  L L    ++    +   F
Sbjct: 441 KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF 476

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 11/108 (10%)

Query: 77  CVNATTRRVKELSLDG--ITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYL 134
           C+      ++ LSL    ++  +N+ FL L     +  L  LDLSYN+   V        
Sbjct: 216 CLELANTSIRNLSLSNSQLSTTSNTTFLGL----KWTNLTMLDLSYNNLNVVGND----- 266

Query: 135 SIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPN 182
           S   L  L+   L  NN+ +    SL  + ++  L+L     +  I  
Sbjct: 267 SFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL 314

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 1/82 (1%)

Query: 102 LNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLT 161
           +  +MF     L+ L LS +           ++S+     L ILNL  N ++     + +
Sbjct: 344 IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSP-LHILNLTKNKISKIESDAFS 402

Query: 162 TIISLTNLSLGYCGIEGFIPNQ 183
            +  L  L LG   I   +  Q
Sbjct: 403 WLGHLEVLDLGLNEIGQELTGQ 424

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 38.8 bits (91), Expect = 6e-04
 Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 9/79 (11%)

Query: 107 FLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNN---VNNSLLPSLTTI 163
           F     L+ L L   +   V            L+ L IL+L +NN   +N+ +L  L   
Sbjct: 450 FALVPSLQRLMLRRVALKNVDSSPS---PFQPLRNLTILDLSNNNIANINDDMLEGLE-- 504

Query: 164 ISLTNLSLGYCGIEGFIPN 182
             L  L L +  +     +
Sbjct: 505 -KLEILDLQHNNLARLWKH 522

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 38.8 bits (91), Expect = 6e-04
 Identities = 20/84 (23%), Positives = 30/84 (35%), Gaps = 9/84 (10%)

Query: 105 SMFLPFQELESLDLSYN---SFYGVYEKEGMYLSIGSLKWLKILNLYSNN---VNNSLLP 158
            M    ++LE LDL +N     +      G    +  L  L ILNL SN    +   +  
Sbjct: 498 DMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFK 557

Query: 159 SLTTIISLTNLSLGYCGIEGFIPN 182
            L     L  + LG   +     +
Sbjct: 558 DLF---ELKIIDLGLNNLNTLPAS 578

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.7 bits (114), Expect = 6e-07
 Identities = 21/140 (15%), Positives = 38/140 (27%), Gaps = 20/140 (14%)

Query: 51  TGYKDEILTSWVDDEMSDCCRWEQVKCVN-ATTRRVKELSLDGITLGANSGFLNLSMFLP 109
            G+  +   +W  +   +   W     V+  +  RV  LSL+G            S  +P
Sbjct: 50  QGFGTQPGANW--NFNKELDMWGAQPGVSLNSNGRVTGLSLEG---------FGASGRVP 98

Query: 110 -----FQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLT--T 162
                  ELE L L  +         G    I +    +       +   + +       
Sbjct: 99  DAIGQLTELEVLALGSHGEKVNERLFGP-KGISANMSDEQKQKMRMHYQKTFVDYDPRED 157

Query: 163 IISLTNLSLGYCGIEGFIPN 182
              L    +     +  I  
Sbjct: 158 FSDLIKDCINSDPQQKSIKK 177

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 17/84 (20%), Positives = 35/84 (41%), Gaps = 5/84 (5%)

Query: 99  SGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLP 158
             +  L+     ++++ + + YN+         +  S+  +K L +L    N +    LP
Sbjct: 293 DDWQALADAPVGEKIQIIYIGYNNLKTF----PVETSLQKMKKLGMLECLYNQL-EGKLP 347

Query: 159 SLTTIISLTNLSLGYCGIEGFIPN 182
           +  + I L +L+L Y  I     N
Sbjct: 348 AFGSEIKLASLNLAYNQITEIPAN 371

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 11/79 (13%), Positives = 30/79 (37%), Gaps = 11/79 (13%)

Query: 111 QELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSN-------NVNNSLLPSLTTI 163
           +++E+L  ++N    +           S+  +  ++   N          + L P+    
Sbjct: 377 EQVENLSFAHNKLKYIPNI----FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG 432

Query: 164 ISLTNLSLGYCGIEGFIPN 182
           I++++++L    I  F   
Sbjct: 433 INVSSINLSNNQISKFPKE 451

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 13/75 (17%), Positives = 32/75 (42%), Gaps = 4/75 (5%)

Query: 111 QELESLDLSYNSFYGVYEKEGMY---LSIGSLKWLKILNLYSNNVNNSLLP-SLTTIISL 166
            E++ ++++ N      + +  +         + ++I+ +  NN+    +  SL  +  L
Sbjct: 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKL 332

Query: 167 TNLSLGYCGIEGFIP 181
             L   Y  +EG +P
Sbjct: 333 GMLECLYNQLEGKLP 347

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 13/77 (16%), Positives = 30/77 (38%), Gaps = 2/77 (2%)

Query: 113 LESLDLSYNSFYGVYEK--EGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLS 170
           + ++D SYN    V  K  + +  +      +  +NL +N ++       +T   L++++
Sbjct: 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSIN 463

Query: 171 LGYCGIEGFIPNQGMFI 187
           L    +     N     
Sbjct: 464 LMGNMLTEIPKNSLKDE 480

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 10/84 (11%), Positives = 25/84 (29%), Gaps = 5/84 (5%)

Query: 103 NLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT 162
                   +  E+ +  Y   Y   +     L   +LK L  + +Y+      L   L  
Sbjct: 217 PFVAENICEAWENENSEYAQQYKTED-----LKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271

Query: 163 IISLTNLSLGYCGIEGFIPNQGMF 186
           +  +  +++           +  +
Sbjct: 272 LPEMQLINVACNRGISGEQLKDDW 295

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.9 bits (112), Expect = 9e-07
 Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 6/85 (7%)

Query: 99  SGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLP 158
                 S FL  ++L  LD+SY +    ++          L  L  L +  N+  ++ L 
Sbjct: 412 KRVTEFSAFLSLEKLLYLDISYTNTKIDFDG-----IFLGLTSLNTLKMAGNSFKDNTLS 466

Query: 159 S-LTTIISLTNLSLGYCGIEGFIPN 182
           +      +LT L L  C +E     
Sbjct: 467 NVFANTTNLTFLDLSKCQLEQISWG 491

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 19/76 (25%), Positives = 28/76 (36%), Gaps = 5/76 (6%)

Query: 107 FLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISL 166
           F  F EL+ LDLS      + +K     +   L  L  L L  N + +    S + + SL
Sbjct: 52  FSNFSELQWLDLSRCEIETIEDK-----AWHGLHHLSNLILTGNPIQSFSPGSFSGLTSL 106

Query: 167 TNLSLGYCGIEGFIPN 182
            NL      +      
Sbjct: 107 ENLVAVETKLASLESF 122

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 6/82 (7%)

Query: 102 LNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLP-SL 160
            +   F     LE+L         +         IG L  LK LN+  N +++  LP   
Sbjct: 95  FSPGSFSGLTSLENLVAVETKLASLES-----FPIGQLITLKKLNVAHNFIHSCKLPAYF 149

Query: 161 TTIISLTNLSLGYCGIEGFIPN 182
           + + +L ++ L Y  I+    N
Sbjct: 150 SNLTNLVHVDLSYNYIQTITVN 171

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 17/113 (15%), Positives = 32/113 (28%), Gaps = 20/113 (17%)

Query: 84  RVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMY---------- 133
            + E  L       N    ++  F     + ++ L+  S   + +    +          
Sbjct: 262 TIDEFRLTYT----NDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRC 317

Query: 134 ----LSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPN 182
                    L +LK L L  N    S+      + SL+ L L    +      
Sbjct: 318 QLKQFPTLDLPFLKSLTLTMN--KGSISFKKVALPSLSYLDLSRNALSFSGCC 368

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 13/81 (16%), Positives = 25/81 (30%), Gaps = 5/81 (6%)

Query: 102 LNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLT 161
           +  +     + L+ L         +         + + K L+ L L SN++++  LP   
Sbjct: 96  MAETALSGPKALKHLFFIQTGISSIDFI-----PLHNQKTLESLYLGSNHISSIKLPKGF 150

Query: 162 TIISLTNLSLGYCGIEGFIPN 182
               L  L      I      
Sbjct: 151 PTEKLKVLDFQNNAIHYLSKE 171

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 17/81 (20%), Positives = 28/81 (34%), Gaps = 6/81 (7%)

Query: 107 FLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLP-SLTTIIS 165
            +    L+ L LS N F  + +     +S  +   L  L++  N     L    L  + +
Sbjct: 297 LVGLSTLKKLVLSANKFENLCQ-----ISASNFPSLTHLSIKGNTKRLELGTGCLENLEN 351

Query: 166 LTNLSLGYCGIEGFIPNQGMF 186
           L  L L +  IE         
Sbjct: 352 LRELDLSHDDIETSDCCNLQL 372

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 16/95 (16%), Positives = 35/95 (36%), Gaps = 13/95 (13%)

Query: 88  LSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNL 147
           +  + I+     G   +S       +ES++L  + F+ +        +      L+ L+L
Sbjct: 238 MDDEDISPAVFEGLCEMS-------VESINLQKHYFFNISSN-----TFHCFSGLQELDL 285

Query: 148 YSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPN 182
            + +++  L   L  + +L  L L     E     
Sbjct: 286 TATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQI 319

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 6/71 (8%)

Query: 113 LESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPS-LTTIISLTNLSL 171
           L+SL+LSYN    +  +     +      L++L+L    +      S    +  L  L+L
Sbjct: 378 LQSLNLSYNEPLSLKTE-----AFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL 432

Query: 172 GYCGIEGFIPN 182
            +  ++     
Sbjct: 433 SHSLLDISSEQ 443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 5/76 (6%)

Query: 107 FLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISL 166
           F     L  LDL+    Y ++E      +  S   L  L L +N +      +L+   +L
Sbjct: 53  FSRLINLTFLDLTRCQIYWIHED-----TFQSQHRLDTLVLTANPLIFMAETALSGPKAL 107

Query: 167 TNLSLGYCGIEGFIPN 182
            +L     GI      
Sbjct: 108 KHLFFIQTGISSIDFI 123

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 15/84 (17%), Positives = 26/84 (30%), Gaps = 3/84 (3%)

Query: 99  SGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLP 158
              L        + L  LDLS++              + +L  L+ LNL  N   +    
Sbjct: 338 RLELGTGCLENLENLRELDLSHDDIETSDCCNL---QLRNLSHLQSLNLSYNEPLSLKTE 394

Query: 159 SLTTIISLTNLSLGYCGIEGFIPN 182
           +      L  L L +  ++     
Sbjct: 395 AFKECPQLELLDLAFTRLKVKDAQ 418

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 38.5 bits (90), Expect = 8e-04
 Identities = 21/87 (24%), Positives = 32/87 (36%), Gaps = 8/87 (9%)

Query: 99  SGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNN---VNNS 155
                 S F     L+ L+LS++      E+         L  L+ LNL  N+    N  
Sbjct: 413 KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQ-----LFDGLPALQHLNLQGNHFPKGNIQ 467

Query: 156 LLPSLTTIISLTNLSLGYCGIEGFIPN 182
              SL T+  L  L L +C +     +
Sbjct: 468 KTNSLQTLGRLEILVLSFCDLSSIDQH 494

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 7/68 (10%)

Query: 110 FQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNL 169
              ++ L ++                I  L  L+ L +   +V +  +P+L+ + SLT L
Sbjct: 65  AHNIKDLTINNIHATNYN-------PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117

Query: 170 SLGYCGIE 177
            + +   +
Sbjct: 118 DISHSAHD 125

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 38.8 bits (91), Expect = 4e-04
 Identities = 12/72 (16%), Positives = 28/72 (38%), Gaps = 5/72 (6%)

Query: 103 NLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT 162
           N +       LE L +                ++  L  L +L++  +  ++S+L  + T
Sbjct: 80  NYNPISGLSNLERLRIMGKDVTSDKIP-----NLSGLTSLTLLDISHSAHDDSILTKINT 134

Query: 163 IISLTNLSLGYC 174
           +  + ++ L Y 
Sbjct: 135 LPKVNSIDLSYN 146

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 6/85 (7%)

Query: 99  SGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLP 158
                 S+FL  + L  LD+S+      +           L  L++L +  N+   + LP
Sbjct: 409 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNG-----IFNGLSSLEVLKMAGNSFQENFLP 463

Query: 159 -SLTTIISLTNLSLGYCGIEGFIPN 182
              T + +LT L L  C +E   P 
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLSPT 488

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 38.9 bits (91), Expect = 6e-04
 Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 5/81 (6%)

Query: 102 LNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLT 161
           L    F  F EL+ LDLS      + +      +  SL  L  L L  N + +  L + +
Sbjct: 43  LGSYSFFSFPELQVLDLSRCEIQTIEDG-----AYQSLSHLSTLILTGNPIQSLALGAFS 97

Query: 162 TIISLTNLSLGYCGIEGFIPN 182
            + SL  L      +      
Sbjct: 98  GLSSLQKLVAVETNLASLENF 118

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 15/79 (18%), Positives = 25/79 (31%), Gaps = 5/79 (6%)

Query: 103 NLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT 162
             +      + E  +  Y   Y   E     LS  +LK L  + LY+      L   L  
Sbjct: 459 PFTYDNIAVDWEDANSDYAKQYENEE-----LSWSNLKDLTDVELYNCPNMTQLPDFLYD 513

Query: 163 IISLTNLSLGYCGIEGFIP 181
           +  L +L++          
Sbjct: 514 LPELQSLNIACNRGISAAQ 532

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 22/162 (13%), Positives = 38/162 (23%), Gaps = 20/162 (12%)

Query: 33  TERTALLEIKRFFIAVRDTGYKDEILTSWVD---DEMSDCCRWEQVKCVN-ATTRRVKEL 88
            +  AL  I           Y   I  +      +   +   W     V+     RV  L
Sbjct: 269 KDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGL 328

Query: 89  SLDGITLGANSGFLNLSMFLP-----FQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLK 143
           SL G               +P       EL+ L    +S        G       +   +
Sbjct: 329 SLAG---------FGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEER 379

Query: 144 ILNLYSNNVNNSL--LPSLTTIISLTNLSLGYCGIEGFIPNQ 183
              +  +     L     L     L +       ++    + 
Sbjct: 380 KHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDS 421

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 39.9 bits (93), Expect = 3e-04
 Identities = 10/72 (13%), Positives = 19/72 (26%)

Query: 111 QELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLS 170
             + S+D SYN            +          + L  N +         T   ++ + 
Sbjct: 644 YVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTII 703

Query: 171 LGYCGIEGFIPN 182
           L    +     N
Sbjct: 704 LSNNLMTSIPEN 715

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 39.9 bits (93), Expect = 3e-04
 Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 28/100 (28%)

Query: 111 QELESLDLSYNSFYGVYEKEGMYL----SIGSLKWLKILNLYSNNV-------------- 152
            EL+SL+++ N      + +  +        +   ++I  +  NN+              
Sbjct: 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVK 574

Query: 153 -------NNSL--LPSLTTIISLTNLSLGYCGIEGFIPNQ 183
                  +N +  L +  T + LT+L L Y  IE  IP  
Sbjct: 575 LGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEE-IPED 613

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 17/97 (17%), Positives = 34/97 (35%), Gaps = 9/97 (9%)

Query: 83  RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWL 142
           + +K L+L    +      +    F     L+ L+LSYN    +Y       +   L  +
Sbjct: 290 KDLKVLNLAYNKINK----IADEAFYGLDNLQVLNLSYNLLGELYSS-----NFYGLPKV 340

Query: 143 KILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGF 179
             ++L  N++      +   +  L  L L    +   
Sbjct: 341 AYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI 377

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 10/93 (10%)

Query: 89  SLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLY 148
           +L+ + + +N    ++S+      LESL  + N    +         +G L  L  L+L 
Sbjct: 178 TLERLDISSNK-VSDISVLAKLTNLESLIATNNQISDI-------TPLGILTNLDELSLN 229

Query: 149 SNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIP 181
            N + +  + +L ++ +LT+L L    I    P
Sbjct: 230 GNQLKD--IGTLASLTNLTDLDLANNQISNLAP 260

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 9/79 (11%)

Query: 103 NLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT 162
           NL+      +L  L L  N    +         +  L  L  L L  N + +  +  ++ 
Sbjct: 257 NLAPLSGLTKLTELKLGANQISNI-------SPLAGLTALTNLELNENQLED--ISPISN 307

Query: 163 IISLTNLSLGYCGIEGFIP 181
           + +LT L+L +  I    P
Sbjct: 308 LKNLTYLTLYFNNISDISP 326

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 38.4 bits (90), Expect = 8e-04
 Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 16/93 (17%)

Query: 103 NLSMFLPFQELESLDLSYNSFYGVYEKEGM------YLS--------IGSLKWLKILNLY 148
           ++        L  L+LS N+   +    G+                 + +L  L+ L++ 
Sbjct: 126 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDIS 185

Query: 149 SNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIP 181
           SN V++  +  L  + +L +L      I    P
Sbjct: 186 SNKVSD--ISVLAKLTNLESLIATNNQISDITP 216

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 38.0 bits (89), Expect = 9e-04
 Identities = 13/83 (15%), Positives = 31/83 (37%), Gaps = 9/83 (10%)

Query: 103 NLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT 162
           +++      +L  + ++ N    +         + +L  L  L L++N + +  +  L  
Sbjct: 82  DITPLKNLTKLVDILMNNNQIADI-------TPLANLTNLTGLTLFNNQITD--IDPLKN 132

Query: 163 IISLTNLSLGYCGIEGFIPNQGM 185
           + +L  L L    I       G+
Sbjct: 133 LTNLNRLELSSNTISDISALSGL 155

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 39.4 bits (93), Expect = 3e-04
 Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 7/79 (8%)

Query: 103 NLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT 162
           +++      +L+ L++  N    +         + +L  L  L L +N + N  +  +  
Sbjct: 257 DINAVKDLTKLKMLNVGSNQISDIS-------VLNNLSQLNSLFLNNNQLGNEDMEVIGG 309

Query: 163 IISLTNLSLGYCGIEGFIP 181
           + +LT L L    I    P
Sbjct: 310 LTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 38.7 bits (91), Expect = 5e-04
 Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 9/79 (11%)

Query: 103 NLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT 162
           ++        LE L+L+ N    +         + +L  L  L + +N + +  + +L  
Sbjct: 58  SIQGIEYLTNLEYLNLNGNQITDI-------SPLSNLVKLTNLYIGTNKITD--ISALQN 108

Query: 163 IISLTNLSLGYCGIEGFIP 181
           + +L  L L    I    P
Sbjct: 109 LTNLRELYLNEDNISDISP 127

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 38.7 bits (91), Expect = 5e-04
 Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 9/69 (13%)

Query: 113 LESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLG 172
           L SL L+YN    +         + SL  L     Y N + +  +  +  +  L +L +G
Sbjct: 179 LYSLSLNYNQIEDISP-------LASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIG 229

Query: 173 YCGIEGFIP 181
              I    P
Sbjct: 230 NNKITDLSP 238

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 38.7 bits (91), Expect = 5e-04
 Identities = 16/83 (19%), Positives = 34/83 (40%), Gaps = 8/83 (9%)

Query: 103 NLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT 162
           ++S       L  L L+ ++   +         + +L  +  LNL +N+ N S L  L+ 
Sbjct: 102 DISALQNLTNLRELYLNEDNISDI-------SPLANLTKMYSLNLGANH-NLSDLSPLSN 153

Query: 163 IISLTNLSLGYCGIEGFIPNQGM 185
           +  L  L++    ++   P   +
Sbjct: 154 MTGLNYLTVTESKVKDVTPIANL 176

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 38.3 bits (90), Expect = 7e-04
 Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 9/72 (12%)

Query: 110 FQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNL 169
             E     L   S   V       ++   L+ +  L +    V +  +  +  + +L  L
Sbjct: 21  LAEGIRAVLQKASVTDV-------VTQEELESITKLVVAGEKVAS--IQGIEYLTNLEYL 71

Query: 170 SLGYCGIEGFIP 181
           +L    I    P
Sbjct: 72  NLNGNQITDISP 83

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 37.9 bits (89), Expect = 8e-04
 Identities = 20/87 (22%), Positives = 32/87 (36%), Gaps = 9/87 (10%)

Query: 95  LGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNN 154
           LGAN    +LS       L  L ++ +    V         I +L  L  L+L  N + +
Sbjct: 139 LGANHNLSDLSPLSNMTGLNYLTVTESKVKDV-------TPIANLTDLYSLSLNYNQIED 191

Query: 155 SLLPSLTTIISLTNLSLGYCGIEGFIP 181
             +  L ++ SL   +     I    P
Sbjct: 192 --ISPLASLTSLHYFTAYVNQITDITP 216

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 39.0 bits (90), Expect = 5e-04
 Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 8/70 (11%)

Query: 110 FQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNL 169
              +  LDLS+N          +  ++ +L+ L++L    N + N  +  +  +  L  L
Sbjct: 462 LLLVTHLDLSHNRL------RALPPALAALRCLEVLQASDNALEN--VDGVANLPRLQEL 513

Query: 170 SLGYCGIEGF 179
            L    ++  
Sbjct: 514 LLCNNRLQQS 523

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 38.7 bits (90), Expect = 6e-04
 Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 7/69 (10%)

Query: 105 SMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTII 164
           S+      ++ LDLS N    +         +     L++LNL SN +       L ++ 
Sbjct: 28  SLRQSAWNVKELDLSGNPLSQISAA-----DLAPFTKLELLNLSSNVLYE--TLDLESLS 80

Query: 165 SLTNLSLGY 173
           +L  L L  
Sbjct: 81  TLRTLDLNN 89

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 38.4 bits (90), Expect = 6e-04
 Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 7/76 (9%)

Query: 102 LNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLT 161
              S+      ++ LDLS N    +   +     +     L++LNL SN +       L 
Sbjct: 25  ALASLRQSAWNVKELDLSGNPLSQISAAD-----LAPFTKLELLNLSSNVLYE--TLDLE 77

Query: 162 TIISLTNLSLGYCGIE 177
           ++ +L  L L    ++
Sbjct: 78  SLSTLRTLDLNNNYVQ 93

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	187
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.89
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.86
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.82
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.79
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.73
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.6
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.56
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.54
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.51
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.5
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.48
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.45
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.44
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.43
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.43
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.42
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.41
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.4
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.38
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.37
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.36
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.36
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.36
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.35
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.34
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.32
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.32
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.31
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.3
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.28
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.27
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.27
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.25
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.25
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.25
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.24
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.24
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.23
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.23
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.22
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.22
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.21
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.21
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.2
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.19
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.18
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.18
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.18
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.17
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.17
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.17
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.17
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.17
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.17
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.16
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.16
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.15
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.14
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.11
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.1
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.03
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.02
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.02
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.02
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.01
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.01
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.0
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.0
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.99
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.98
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.98
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.97
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.91
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.89
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.89
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.86
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.85
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.84
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.84
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.82
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.8
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.8
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.79
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.79
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.79
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.79
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.78
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.77
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.77
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.75
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.75
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.73
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.73
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.72
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.7
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.7
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.69
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.67
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.66
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.64
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.63
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.62
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.61
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.56
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.45
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.44
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.41
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.26
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.23
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.1
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.09
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.07
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.04
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.02
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.82
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.57
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.49
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.36
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.27
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.2
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.13
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	96.98
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.93
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	96.32
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	96.2
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.95
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	95.64
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	95.59
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.42
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	92.87
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	92.46
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	92.34
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	91.25
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	89.68
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	85.47

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.89  E-value=2.2e-23  Score=169.78  Aligned_cols=142  Identities=27%  Similarity=0.451  Sum_probs=93.0

Q ss_pred             CCcHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCCCCCC--CcceeecCCCC--CCEEEEEcCCCCCCCCCCCCCC
Q 036330           29 GCLETERTALLEIKRFFIAVRDTGYKDEILTSWVDDEMSDCCR--WEQVKCVNATT--RRVKELSLDGITLGANSGFLNL  104 (187)
Q Consensus        29 ~~~~~~~~~Ll~~k~~~~~~~p~~~~~~~l~~W~~~~~~~~C~--w~gv~C~~~~~--~~v~~L~L~~~~l~~~~~~~~~  104 (187)
                      .|.++|++||++||+++.  +|    . .+.+|+.+  .+||.  |.||.|+. ..  ++|++|+|+++++++.. .++ 
T Consensus         2 ~c~~~~~~aL~~~k~~~~--~~----~-~l~~W~~~--~~~C~~~w~gv~C~~-~~~~~~l~~L~L~~~~l~~~~-~~~-   69 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLG--NP----T-TLSSWLPT--TDCCNRTWLGVLCDT-DTQTYRVNNLDLSGLNLPKPY-PIP-   69 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTT--CC----G-GGTTCCTT--SCTTTTCSTTEEECC-SSSCCCEEEEEEECCCCSSCE-ECC-
T ss_pred             CCCHHHHHHHHHHHHhcC--Cc----c-cccCCCCC--CCCCcCCCcceEeCC-CCCCceEEEEECCCCCccCCc-ccC-
Confidence            588999999999999996  45    2 58899765  78998  99999986 22  78999999999994300 122 


Q ss_pred             ccCcCCCCCcEEEccC-CccccccCCC-------------------ccccccCCCCCCCEEEccCCCCCCCChHHhhcCC
Q 036330          105 SMFLPFQELESLDLSY-NSFYGVYEKE-------------------GMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTII  164 (187)
Q Consensus       105 ~~l~~l~~L~~L~Ls~-N~l~g~ip~~-------------------~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~  164 (187)
                      ..+..+++|++|++++ |.+.+.+|..                   ..|..+..+++|++|++++|+++|.+|..++.++
T Consensus        70 ~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  149 (313)
T 1ogq_A           70 SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP  149 (313)
T ss_dssp             GGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT
T ss_pred             hhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCC
Confidence            2355666666666663 6666666610                   0014455555555555555555555555555555


Q ss_pred             CCCEEEcccccccccCCC
Q 036330          165 SLTNLSLGYCGIEGFIPN  182 (187)
Q Consensus       165 ~L~~L~Ls~N~l~G~iP~  182 (187)
                      +|++|++++|+++|.+|.
T Consensus       150 ~L~~L~L~~N~l~~~~p~  167 (313)
T 1ogq_A          150 NLVGITFDGNRISGAIPD  167 (313)
T ss_dssp             TCCEEECCSSCCEEECCG
T ss_pred             CCCeEECcCCcccCcCCH
Confidence            555555555555555553

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.86  E-value=3.8e-22  Score=179.94  Aligned_cols=137  Identities=29%  Similarity=0.358  Sum_probs=100.0

Q ss_pred             CCCcHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCEEEEEcCCCCCCCC----CC-C-
Q 036330           28 RGCLETERTALLEIKRFFIAVRDTGYKDEILTSWVDDEMSDCCRWEQVKCVNATTRRVKELSLDGITLGAN----SG-F-  101 (187)
Q Consensus        28 ~~~~~~~~~~Ll~~k~~~~~~~p~~~~~~~l~~W~~~~~~~~C~w~gv~C~~~~~~~v~~L~L~~~~l~~~----~~-~-  101 (187)
                      ..+.++|++||++||+++.  ||    . .+.+|+.+  .+||+|.||+|+.   ++|+.|+|+++++.+.    .+ . 
T Consensus         7 ~~~~~~~~~all~~k~~~~--~~----~-~l~~W~~~--~~~C~w~gv~C~~---~~v~~L~L~~~~l~g~~~~l~~~l~   74 (768)
T 3rgz_A            7 SQSLYREIHQLISFKDVLP--DK----N-LLPDWSSN--KNPCTFDGVTCRD---DKVTSIDLSSKPLNVGFSAVSSSLL   74 (768)
T ss_dssp             -CCHHHHHHHHHHHHTTCS--CT----T-SSTTCCTT--SCGGGSTTEEEET---TEEEEEECTTSCCCEEHHHHHHHTT
T ss_pred             ccCCHHHHHHHHHHHhhCC--Cc----c-cccCCCCC--CCCcCCcceEECC---CcEEEEECCCCCcCCccCccChhHh
Confidence            3456889999999999997  56    3 68999855  7899999999984   7999999999988431    00 0 


Q ss_pred             ----------------CCCccCcCCCCCcEEEccCCccccccCCCcccc--ccCCCCCCCEEEccCCCCCCCChHHh-hc
Q 036330          102 ----------------LNLSMFLPFQELESLDLSYNSFYGVYEKEGMYL--SIGSLKWLKILNLYSNNVNNSLLPSL-TT  162 (187)
Q Consensus       102 ----------------~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~--~~~~l~~L~~L~Ls~N~l~G~iP~~l-~~  162 (187)
                                      ..+..+..+++|++|||++|.++|.+|     .  .++++++|++|+|++|++++.+|..+ .+
T Consensus        75 ~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~-----~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~  149 (768)
T 3rgz_A           75 SLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVT-----TLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK  149 (768)
T ss_dssp             TCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGG-----GGGGGGGCTTCCEEECCSSEEECCSSCCSCCC
T ss_pred             ccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCC-----ChHHHhCCCCCCEEECcCCccCCcCCHHHhcc
Confidence                            001346778888999999998888887     5  66777777777777777766666554 55


Q ss_pred             CCCCCEEEcccccccccCC
Q 036330          163 IISLTNLSLGYCGIEGFIP  181 (187)
Q Consensus       163 l~~L~~L~Ls~N~l~G~iP  181 (187)
                      +++|++|++++|+++|.+|
T Consensus       150 l~~L~~L~Ls~n~l~~~~~  168 (768)
T 3rgz_A          150 LNSLEVLDLSANSISGANV  168 (768)
T ss_dssp             CTTCSEEECCSSCCEEETH
T ss_pred             CCCCCEEECCCCccCCcCC
Confidence            6666666666666665544

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.82  E-value=2.7e-20  Score=164.79  Aligned_cols=137  Identities=19%  Similarity=0.169  Sum_probs=104.4

Q ss_pred             cHHHHHHHHHHHhhccccCCCCCC----CCCCCCCCCCCCCCCCCC---cceeecCCCCCCEEEEEcCCCCCCCCCCCCC
Q 036330           31 LETERTALLEIKRFFIAVRDTGYK----DEILTSWVDDEMSDCCRW---EQVKCVNATTRRVKELSLDGITLGANSGFLN  103 (187)
Q Consensus        31 ~~~~~~~Ll~~k~~~~~~~p~~~~----~~~l~~W~~~~~~~~C~w---~gv~C~~~~~~~v~~L~L~~~~l~~~~~~~~  103 (187)
                      ...|++||.++|+++.+  +.+..    .....+|+.+  .++|.|   .||+|+.  .++|++|+|++++++   +.++
T Consensus        28 ~~~d~~aL~~~~~~~~~--~~w~~~~~~~~~~~~W~~~--~~~c~w~~~~GV~C~~--~~~V~~L~L~~~~l~---g~lp   98 (636)
T 4eco_A           28 YIKDYLALKEIWDALNG--KNWSQQGFGTQPGANWNFN--KELDMWGAQPGVSLNS--NGRVTGLSLEGFGAS---GRVP   98 (636)
T ss_dssp             HHHHHHHHHHHHHHTTG--GGCCCCC------CCCCCS--SCGGGTTCCTTEEECT--TCCEEEEECTTSCCE---EEEC
T ss_pred             HHHHHHHHHHHHHHcCC--CCcccCCcCCccCCCCCCC--CCcccccCCCCeEEcC--CCCEEEEEecCcccC---CcCC
Confidence            45799999999999873  32110    0123479876  899999   9999987  489999999999993   3343


Q ss_pred             CccCcCCCCCcEEEccCCcc------------------------------------------------------------
Q 036330          104 LSMFLPFQELESLDLSYNSF------------------------------------------------------------  123 (187)
Q Consensus       104 ~~~l~~l~~L~~L~Ls~N~l------------------------------------------------------------  123 (187)
                       +.+.+|++|++|+|++|.+                                                            
T Consensus        99 -~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~  177 (636)
T 4eco_A           99 -DAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK  177 (636)
T ss_dssp             -GGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCC
T ss_pred             -hHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCcccccccc
Confidence             3478888888888888843                                                            


Q ss_pred             ------------------ccccCCCccccccCCCCCCCEEEccCCCCCCC-----------------ChHHhh--cCCCC
Q 036330          124 ------------------YGVYEKEGMYLSIGSLKWLKILNLYSNNVNNS-----------------LLPSLT--TIISL  166 (187)
Q Consensus       124 ------------------~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~-----------------iP~~l~--~l~~L  166 (187)
                                        +| +|     ..++++++|++|+|++|+++|.                 +|+.++  ++++|
T Consensus       178 ~~~~~l~~l~l~~~~n~l~~-ip-----~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L  251 (636)
T 4eco_A          178 SSRITLKDTQIGQLSNNITF-VS-----KAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDL  251 (636)
T ss_dssp             CCCCCCCTTTTTCCSCEEEE-EC-----GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTC
T ss_pred             ccccchhhhhhccccCCCcc-CC-----HHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCC
Confidence                              33 55     6788888888888888888875                 888877  88888


Q ss_pred             CEEEcccccccccCCCC
Q 036330          167 TNLSLGYCGIEGFIPNQ  183 (187)
Q Consensus       167 ~~L~Ls~N~l~G~iP~~  183 (187)
                      ++|+|++|++.|.+|.+
T Consensus       252 ~~L~L~~n~l~~~~p~~  268 (636)
T 4eco_A          252 TDVEVYNCPNLTKLPTF  268 (636)
T ss_dssp             CEEEEECCTTCSSCCTT
T ss_pred             CEEEecCCcCCccChHH
Confidence            88888888888888864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.79  E-value=1.3e-19  Score=165.56  Aligned_cols=137  Identities=20%  Similarity=0.178  Sum_probs=99.2

Q ss_pred             CCcHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCC---CCCC--CCC------------cceeecCCCCCCEEEEEcC
Q 036330           29 GCLETERTALLEIKRFFIAVRDTGYKDEILTSWVDDE---MSDC--CRW------------EQVKCVNATTRRVKELSLD   91 (187)
Q Consensus        29 ~~~~~~~~~Ll~~k~~~~~~~p~~~~~~~l~~W~~~~---~~~~--C~w------------~gv~C~~~~~~~v~~L~L~   91 (187)
                      ++..+|++||++||+++.+  |         +|+.+.   ..+|  |.|            .||.|+.  .++|++|+|+
T Consensus       265 ~~~~~d~~ALl~~k~~l~~--~---------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~--~~~V~~L~Ls  331 (876)
T 4ecn_A          265 AEYIKDYKALKAIWEALDG--K---------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN--NGRVTGLSLA  331 (876)
T ss_dssp             CHHHHHHHHHHHHHHHTTG--G---------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT--TSCEEEEECT
T ss_pred             ccchHHHHHHHHHHHHcCC--C---------CCCcCCCcccccCCccccccccccccccCcCceEecC--CCCEEEEECc
Confidence            3456899999999999962  2         676542   1355  999            9999986  5899999999


Q ss_pred             CCCCCCCCCCCCCccCcCCCCCcEEEc-cCCccccccCCC----------------------------------------
Q 036330           92 GITLGANSGFLNLSMFLPFQELESLDL-SYNSFYGVYEKE----------------------------------------  130 (187)
Q Consensus        92 ~~~l~~~~~~~~~~~l~~l~~L~~L~L-s~N~l~g~ip~~----------------------------------------  130 (187)
                      ++++.   +.++ +.+++|++|+.|+| ++|.++|..|..                                        
T Consensus       332 ~~~L~---G~ip-~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~  407 (876)
T 4ecn_A          332 GFGAK---GRVP-DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDA  407 (876)
T ss_dssp             TTCCE---EEEC-GGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHH
T ss_pred             cCCCC---CcCc-hHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHH
Confidence            99993   3333 34778888888888 777766651100                                        


Q ss_pred             -------------------------------ccccccCCCCCCCEEEccCCCCCC-----------------CChHHhh-
Q 036330          131 -------------------------------GMYLSIGSLKWLKILNLYSNNVNN-----------------SLLPSLT-  161 (187)
Q Consensus       131 -------------------------------~~~~~~~~l~~L~~L~Ls~N~l~G-----------------~iP~~l~-  161 (187)
                                                     ++|..++++++|++|+|++|+++|                 .+|+.++ 
T Consensus       408 l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f  487 (876)
T 4ecn_A          408 INRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSW  487 (876)
T ss_dssp             HHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCG
T ss_pred             hhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhh
Confidence                                           023667777777777777777777                 3777766 


Q ss_pred             -cCCCCCEEEcccccccccCCC
Q 036330          162 -TIISLTNLSLGYCGIEGFIPN  182 (187)
Q Consensus       162 -~l~~L~~L~Ls~N~l~G~iP~  182 (187)
                       ++++|++|+|++|++.|.+|.
T Consensus       488 ~~L~~L~~L~Ls~N~l~~~iP~  509 (876)
T 4ecn_A          488 SNLKDLTDVELYNCPNMTQLPD  509 (876)
T ss_dssp             GGCTTCCEEEEESCTTCCSCCG
T ss_pred             ccCCCCCEEECcCCCCCccChH
Confidence             777777777777777777774

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.73  E-value=1.8e-18  Score=141.75  Aligned_cols=137  Identities=16%  Similarity=0.191  Sum_probs=111.3

Q ss_pred             CcHHHHHHHHHHHhhccccCCCCCCCCCCCCCCC--CCCCCCCCCcceeecC-------CCCCCEEEEEcCCCCCCCCCC
Q 036330           30 CLETERTALLEIKRFFIAVRDTGYKDEILTSWVD--DEMSDCCRWEQVKCVN-------ATTRRVKELSLDGITLGANSG  100 (187)
Q Consensus        30 ~~~~~~~~Ll~~k~~~~~~~p~~~~~~~l~~W~~--~~~~~~C~w~gv~C~~-------~~~~~v~~L~L~~~~l~~~~~  100 (187)
                      +..+|+++|++||+.+.. ++    ......|..  ....++|.|.|+.|..       ....+|+.|+|++++++    
T Consensus        24 ~~~~~~~aLl~~k~~~~~-~~----~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~----   94 (328)
T 4fcg_A           24 ALRPYHDVLSQWQRHYNA-DR----NRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP----   94 (328)
T ss_dssp             CCCCHHHHHHHHHHHHHH-CC----TTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS----
T ss_pred             cCchHHHHHHHHHHhccC-Cc----hhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch----
Confidence            456799999999998854 44    245677831  1137899999999952       12468999999999994    


Q ss_pred             CCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccccC
Q 036330          101 FLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFI  180 (187)
Q Consensus       101 ~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~i  180 (187)
                      .++. .+..+++|++|+|++|.++ .+|     ..++.+++|++|+|++|+++ .+|..++++++|++|++++|++.|.+
T Consensus        95 ~lp~-~l~~l~~L~~L~L~~n~l~-~lp-----~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~  166 (328)
T 4fcg_A           95 QFPD-QAFRLSHLQHMTIDAAGLM-ELP-----DTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTEL  166 (328)
T ss_dssp             SCCS-CGGGGTTCSEEEEESSCCC-CCC-----SCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCC
T ss_pred             hcCh-hhhhCCCCCEEECCCCCcc-chh-----HHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCcccc
Confidence            2332 3667899999999999999 888     78999999999999999999 88999999999999999999999999


Q ss_pred             CCC
Q 036330          181 PNQ  183 (187)
Q Consensus       181 P~~  183 (187)
                      |..
T Consensus       167 p~~  169 (328)
T 4fcg_A          167 PEP  169 (328)
T ss_dssp             CSC
T ss_pred             Chh
Confidence            875

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.60  E-value=7.8e-16  Score=138.75  Aligned_cols=95  Identities=24%  Similarity=0.360  Sum_probs=86.3

Q ss_pred             CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhc
Q 036330           83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT  162 (187)
Q Consensus        83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~  162 (187)
                      ..++.|+|++|.+++   .++ ..++.++.|+.|+|++|.++|.+|     ..++.+++|++|||++|+++|.+|..+++
T Consensus       632 ~~L~~LdLs~N~l~g---~ip-~~l~~l~~L~~L~Ls~N~l~g~ip-----~~l~~L~~L~~LdLs~N~l~g~ip~~l~~  702 (768)
T 3rgz_A          632 GSMMFLDMSYNMLSG---YIP-KEIGSMPYLFILNLGHNDISGSIP-----DEVGDLRGLNILDLSSNKLDGRIPQAMSA  702 (768)
T ss_dssp             BCCCEEECCSSCCBS---CCC-GGGGGCTTCCEEECCSSCCCSCCC-----GGGGGCTTCCEEECCSSCCEECCCGGGGG
T ss_pred             ccccEEECcCCcccc---cCC-HHHhccccCCEEeCcCCccCCCCC-----hHHhCCCCCCEEECCCCcccCcCChHHhC
Confidence            468899999999943   233 458899999999999999999999     89999999999999999999999999999


Q ss_pred             CCCCCEEEcccccccccCCCCCCC
Q 036330          163 IISLTNLSLGYCGIEGFIPNQGMF  186 (187)
Q Consensus       163 l~~L~~L~Ls~N~l~G~iP~~~~~  186 (187)
                      +++|++|++++|+++|.||..+.|
T Consensus       703 l~~L~~L~ls~N~l~g~iP~~~~~  726 (768)
T 3rgz_A          703 LTMLTEIDLSNNNLSGPIPEMGQF  726 (768)
T ss_dssp             CCCCSEEECCSSEEEEECCSSSSG
T ss_pred             CCCCCEEECcCCcccccCCCchhh
Confidence            999999999999999999987654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.56  E-value=2e-14  Score=111.87  Aligned_cols=107  Identities=19%  Similarity=0.215  Sum_probs=64.3

Q ss_pred             CCCCCCCCCCCCCCcceeecCC--------CCCCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCcc-------
Q 036330           59 TSWVDDEMSDCCRWEQVKCVNA--------TTRRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSF-------  123 (187)
Q Consensus        59 ~~W~~~~~~~~C~w~gv~C~~~--------~~~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l-------  123 (187)
                      ..|...  ...|+|.+|.|...        ....++.|+|++|.+++..+    ..+..+++|++|+|++|.+       
T Consensus        10 ~~~~~~--~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~----~~~~~l~~L~~L~L~~N~l~~i~~~~   83 (229)
T 3e6j_A           10 SAACPS--QCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEP----GVFDSLINLKELYLGSNQLGALPVGV   83 (229)
T ss_dssp             -CCCCT--TCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             hccCCC--CCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCH----HHhhCccCCcEEECCCCCCCCcChhh
Confidence            344443  68999999999751        12357889999988853321    2244445555555555554       


Q ss_pred             -----------------ccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEccccccc
Q 036330          124 -----------------YGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIE  177 (187)
Q Consensus       124 -----------------~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~  177 (187)
                                       ++..+     ..+..+++|++|+|++|+++ .+|..+..+++|++|+|++|+|+
T Consensus        84 ~~~l~~L~~L~Ls~N~l~~l~~-----~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~  148 (229)
T 3e6j_A           84 FDSLTQLTVLDLGTNQLTVLPS-----AVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK  148 (229)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCT-----TTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCC
T ss_pred             cccCCCcCEEECCCCcCCccCh-----hHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCC
Confidence                             43222     33455666666666666666 56666666666666666666666

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.54  E-value=2e-14  Score=108.96  Aligned_cols=106  Identities=22%  Similarity=0.268  Sum_probs=73.1

Q ss_pred             CCCCcceeecCC--------CCCCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCC
Q 036330           69 CCRWEQVKCVNA--------TTRRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLK  140 (187)
Q Consensus        69 ~C~w~gv~C~~~--------~~~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~  140 (187)
                      .|.|+.+.|...        ....++.|++++|.+++..   +...+..+++|++|+|++|.+++..|     ..+..++
T Consensus         7 ~C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~~-----~~~~~l~   78 (192)
T 1w8a_A            7 HCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRIS---SDGLFGRLPHLVKLELKRNQLTGIEP-----NAFEGAS   78 (192)
T ss_dssp             EEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBC---CSCSGGGCTTCCEEECCSSCCCCBCT-----TTTTTCT
T ss_pred             EECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccC---CccccccCCCCCEEECCCCCCCCcCH-----hHcCCcc
Confidence            366777777641        1126788888888873221   11236677888888888888887666     6677777


Q ss_pred             CCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccccCCC
Q 036330          141 WLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPN  182 (187)
Q Consensus       141 ~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~  182 (187)
                      +|++|+|++|++++..|..+.++++|++|+|++|++++.+|.
T Consensus        79 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  120 (192)
T 1w8a_A           79 HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG  120 (192)
T ss_dssp             TCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTT
T ss_pred             cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHH
Confidence            777777777777776666677777777777777777766664

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.51  E-value=1.1e-13  Score=103.13  Aligned_cols=104  Identities=21%  Similarity=0.321  Sum_probs=75.9

Q ss_pred             CCCCcceeecCC--------CCCCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCC
Q 036330           69 CCRWEQVKCVNA--------TTRRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLK  140 (187)
Q Consensus        69 ~C~w~gv~C~~~--------~~~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~  140 (187)
                      .|+|.++.|...        ....++.|+++++.+++    ++...+..+++|++|++++|.+++..+     ..+..++
T Consensus         6 ~C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~-----~~~~~l~   76 (177)
T 2o6r_A            6 SCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQS----LPHGVFDKLTQLTKLSLSQNQIQSLPD-----GVFDKLT   76 (177)
T ss_dssp             EEETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCC----CCTTTTTTCTTCSEEECCSSCCCCCCT-----TTTTTCT
T ss_pred             EeCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccE----eCHHHhcCcccccEEECCCCcceEeCh-----hHccCCC
Confidence            467999998641        12368899999998842    233446778888888888888885444     4567788


Q ss_pred             CCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccccCCC
Q 036330          141 WLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPN  182 (187)
Q Consensus       141 ~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~  182 (187)
                      +|++|++++|++++..|..+..+++|++|++++|+++ .+|.
T Consensus        77 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~  117 (177)
T 2o6r_A           77 KLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLK-SVPD  117 (177)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCT
T ss_pred             ccCEEECCCCCccccCHHHhhCCcccCEEECcCCcce-EeCH
Confidence            8888888888888666666777888888888888887 4554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.50  E-value=9.4e-14  Score=103.39  Aligned_cols=103  Identities=20%  Similarity=0.194  Sum_probs=83.8

Q ss_pred             CCCcceeecCC--------CCCCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCC
Q 036330           70 CRWEQVKCVNA--------TTRRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKW  141 (187)
Q Consensus        70 C~w~gv~C~~~--------~~~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~  141 (187)
                      |.|+.+.|...        ....++.|+|++|.+++    +.+..+..+++|++|+|++|.+++..+     ..+..+++
T Consensus         9 C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~----~~~~~~~~l~~L~~L~Ls~N~l~~l~~-----~~f~~l~~   79 (170)
T 3g39_A            9 CSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITK----LEPGVFDRLTQLTRLDLDNNQLTVLPA-----GVFDKLTQ   79 (170)
T ss_dssp             EETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCC----CCTTTTTTCTTCSEEECCSSCCCCCCT-----TTTTTCTT
T ss_pred             cCCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCc----cChhhhcCcccCCEEECCCCCcCccCh-----hhccCCCC
Confidence            67888888641        12467899999999953    333558889999999999999996544     56789999


Q ss_pred             CCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccccCC
Q 036330          142 LKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIP  181 (187)
Q Consensus       142 L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP  181 (187)
                      |++|+|++|++++..|..+..+++|++|+|++|.+++..+
T Consensus        80 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           80 LTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            9999999999997666679999999999999999986543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.48  E-value=2.2e-13  Score=103.85  Aligned_cols=106  Identities=19%  Similarity=0.193  Sum_probs=57.2

Q ss_pred             CCCCCcceeecCC--------CCCCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCC---------
Q 036330           68 DCCRWEQVKCVNA--------TTRRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKE---------  130 (187)
Q Consensus        68 ~~C~w~gv~C~~~--------~~~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~---------  130 (187)
                      -.|.|.+|.|...        ...+++.|+++++++++..    ...+..+++|++|++++|.+++..+..         
T Consensus         5 C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~   80 (208)
T 2o6s_A            5 CSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLP----NGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTY   80 (208)
T ss_dssp             CEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCC----TTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCC----hhhhcccccCcEEECCCCccCccChhhcCCCCCcCE
Confidence            3478999999641        1235788999988884322    233445555555555555555322200         


Q ss_pred             ---------cc-ccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEccccccc
Q 036330          131 ---------GM-YLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIE  177 (187)
Q Consensus       131 ---------~~-~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~  177 (187)
                               .+ +..+..+++|++|++++|++++..+..+..+++|++|++++|+++
T Consensus        81 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  137 (208)
T 2o6s_A           81 LNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK  137 (208)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             EECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc
Confidence                     00 023455555555555555555444444555555555555555555

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.45  E-value=3.7e-13  Score=102.21  Aligned_cols=104  Identities=27%  Similarity=0.319  Sum_probs=83.5

Q ss_pred             CCCCcceeecCC--------CCCCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCC
Q 036330           69 CCRWEQVKCVNA--------TTRRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLK  140 (187)
Q Consensus        69 ~C~w~gv~C~~~--------~~~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~  140 (187)
                      .|.|..+.|...        ....++.|++++|.++    .++ ..+..+++|+.|+|++|.+++..+     ..|..++
T Consensus         9 ~C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~----~ip-~~~~~l~~L~~L~Ls~N~i~~i~~-----~~f~~l~   78 (193)
T 2wfh_A            9 TCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT----LVP-KELSNYKHLTLIDLSNNRISTLSN-----QSFSNMT   78 (193)
T ss_dssp             EEETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCC----SCC-GGGGGCTTCCEEECCSSCCCCCCT-----TTTTTCT
T ss_pred             EeCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc----hhH-HHhhcccCCCEEECCCCcCCEeCH-----hHccCCC
Confidence            456777777641        1236889999999984    233 457889999999999999997666     6789999


Q ss_pred             CCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccccCCCC
Q 036330          141 WLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPNQ  183 (187)
Q Consensus       141 ~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~  183 (187)
                      +|++|+|++|++++..|..|..+++|++|+|++|+++ .+|..
T Consensus        79 ~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~  120 (193)
T 2wfh_A           79 QLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEG  120 (193)
T ss_dssp             TCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCC-BCCTT
T ss_pred             CCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCC-eeChh
Confidence            9999999999999877778999999999999999999 55653

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.44  E-value=4.3e-13  Score=103.69  Aligned_cols=71  Identities=25%  Similarity=0.160  Sum_probs=42.1

Q ss_pred             CcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccccCCC
Q 036330          107 FLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPN  182 (187)
Q Consensus       107 l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~  182 (187)
                      +..+++|++|+|++|.+++..|     ..+..+++|++|+|++|++++..|..+..+++|++|+|++|++++..|.
T Consensus        77 ~~~l~~L~~L~Ls~N~l~~~~~-----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  147 (220)
T 2v70_A           77 FEGASGVNEILLTSNRLENVQH-----KMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPG  147 (220)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCG-----GGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTT
T ss_pred             hCCCCCCCEEECCCCccCccCH-----hHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHH
Confidence            3444555555555555544333     4466666666666666666666666666666666666666666654443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.43  E-value=4.4e-13  Score=103.66  Aligned_cols=106  Identities=22%  Similarity=0.284  Sum_probs=58.8

Q ss_pred             CCCCcceeecCC--------CCCCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCC----------
Q 036330           69 CCRWEQVKCVNA--------TTRRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKE----------  130 (187)
Q Consensus        69 ~C~w~gv~C~~~--------~~~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~----------  130 (187)
                      .|.|..+.|...        ....++.|++++|.++.+    +...+..+++|++|+|++|.+++..|..          
T Consensus        10 ~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i----~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L   85 (220)
T 2v9t_B           10 TCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVI----PPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSL   85 (220)
T ss_dssp             EEETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEE----CTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEE
T ss_pred             EECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCc----CHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEE
Confidence            367888888641        113578888888887422    2223445555555555555555443400          


Q ss_pred             --------ccc-cccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccc
Q 036330          131 --------GMY-LSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEG  178 (187)
Q Consensus       131 --------~~~-~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G  178 (187)
                              .+| ..+..+++|++|+|++|++++..|..|..+++|++|+|++|++++
T Consensus        86 ~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  142 (220)
T 2v9t_B           86 VLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT  142 (220)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             ECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCE
Confidence                    000 234555666666666666665555566666666666666666663

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.43  E-value=2.2e-13  Score=103.13  Aligned_cols=90  Identities=23%  Similarity=0.246  Sum_probs=80.4

Q ss_pred             CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhc
Q 036330           83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT  162 (187)
Q Consensus        83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~  162 (187)
                      .+++.|+|++|.+++    +.+..+..+++|++|+|++|.+++..|     ..+..+++|++|+|++|++++.+|..+..
T Consensus        54 ~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~-----~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  124 (192)
T 1w8a_A           54 PHLVKLELKRNQLTG----IEPNAFEGASHIQELQLGENKIKEISN-----KMFLGLHQLKTLNLYDNQISCVMPGSFEH  124 (192)
T ss_dssp             TTCCEEECCSSCCCC----BCTTTTTTCTTCCEEECCSCCCCEECS-----SSSTTCTTCCEEECCSSCCCEECTTSSTT
T ss_pred             CCCCEEECCCCCCCC----cCHhHcCCcccCCEEECCCCcCCccCH-----HHhcCCCCCCEEECCCCcCCeeCHHHhhc
Confidence            579999999999943    223558889999999999999998777     67999999999999999999999999999


Q ss_pred             CCCCCEEEcccccccccCC
Q 036330          163 IISLTNLSLGYCGIEGFIP  181 (187)
Q Consensus       163 l~~L~~L~Ls~N~l~G~iP  181 (187)
                      +++|++|+|++|.+++..|
T Consensus       125 l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A          125 LNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CTTCCEEECTTCCBCCSGG
T ss_pred             CCCCCEEEeCCCCccCcCc
Confidence            9999999999999998765

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.42  E-value=5.7e-13  Score=104.61  Aligned_cols=64  Identities=20%  Similarity=0.188  Sum_probs=33.4

Q ss_pred             CCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEccccccc
Q 036330          109 PFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIE  177 (187)
Q Consensus       109 ~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~  177 (187)
                      .+++|++|++++|.+++..+     ..+..+++|++|+|++|++++..+..+..+++|++|+|++|+++
T Consensus        81 ~l~~L~~L~L~~n~l~~~~~-----~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  144 (251)
T 3m19_A           81 DLTELGTLGLANNQLASLPL-----GVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ  144 (251)
T ss_dssp             TCTTCCEEECTTSCCCCCCT-----TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             cCCcCCEEECCCCcccccCh-----hHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCC
Confidence            34444444444444443222     34455566666666666665444444555666666666666665

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.41  E-value=1.1e-12  Score=103.92  Aligned_cols=106  Identities=23%  Similarity=0.268  Sum_probs=54.5

Q ss_pred             CCCCCCcceeecCC-------------------CCCCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCcccccc
Q 036330           67 SDCCRWEQVKCVNA-------------------TTRRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVY  127 (187)
Q Consensus        67 ~~~C~w~gv~C~~~-------------------~~~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~i  127 (187)
                      .+.|.|.|+.|...                   ....++.|+++++.++.    ++...+..+++|++|++++|.++. +
T Consensus         2 ~~~C~~~~~~C~c~~~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~-i   76 (270)
T 2o6q_A            2 EALCKKDGGVCSCNNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSS----LPSKAFHRLTKLRLLYLNDNKLQT-L   76 (270)
T ss_dssp             CCCBGGGTCSBEEETTTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSC----CCTTSSSSCTTCCEEECCSSCCSC-C
T ss_pred             CccCCCCCCCCEeCCCCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCe----eCHHHhcCCCCCCEEECCCCccCe-e
Confidence            46788888777530                   01134455555555521    112235556666666666666653 3


Q ss_pred             CCC-------------------cc-ccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEccccccc
Q 036330          128 EKE-------------------GM-YLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIE  177 (187)
Q Consensus       128 p~~-------------------~~-~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~  177 (187)
                      |..                   .+ +..+..+++|++|++++|++++..|..++.+++|++|++++|+++
T Consensus        77 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  146 (270)
T 2o6q_A           77 PAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ  146 (270)
T ss_dssp             CTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             ChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC
Confidence            310                   00 023445555555555555555544445555566666666666655

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.40  E-value=9.1e-13  Score=113.61  Aligned_cols=104  Identities=19%  Similarity=0.129  Sum_probs=83.7

Q ss_pred             CCCCcceeecCC----------CCCCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCC
Q 036330           69 CCRWEQVKCVNA----------TTRRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGS  138 (187)
Q Consensus        69 ~C~w~gv~C~~~----------~~~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~  138 (187)
                      .|.|.|+ |+..          ...+++.|++++|.+++    ..+..+..+++|++|++++|.+++..|     ..+..
T Consensus         3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~i~~~~~-----~~~~~   72 (549)
T 2z81_A            3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITY----IGHGDLRACANLQVLILKSSRINTIEG-----DAFYS   72 (549)
T ss_dssp             EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCE----ECSSTTSSCTTCCEEECTTSCCCEECT-----TTTTT
T ss_pred             cCCCCce-EECCCCccccccccCCCCccEEECcCCccCc----cChhhhhcCCcccEEECCCCCcCccCh-----hhccc
Confidence            5889888 8641          12368999999999842    223457889999999999999998776     78889


Q ss_pred             CCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccc-cCCC
Q 036330          139 LKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEG-FIPN  182 (187)
Q Consensus       139 l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G-~iP~  182 (187)
                      +++|++|+|++|++++..|..++++++|++|++++|++++ .+|.
T Consensus        73 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  117 (549)
T 2z81_A           73 LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS  117 (549)
T ss_dssp             CTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSC
T ss_pred             cccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhh
Confidence            9999999999999998777789999999999999999885 3443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.38  E-value=9.6e-13  Score=101.73  Aligned_cols=91  Identities=19%  Similarity=0.150  Sum_probs=54.6

Q ss_pred             CEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcC
Q 036330           84 RVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTI  163 (187)
Q Consensus        84 ~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l  163 (187)
                      .++.|+|++|.+++.   .+...+..+++|++|+|++|.+++..+     ..+..+++|++|+|++|++++..|..+..+
T Consensus        33 ~~~~L~L~~N~l~~~---~~~~~~~~l~~L~~L~L~~N~i~~i~~-----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  104 (220)
T 2v70_A           33 YTAELRLNNNEFTVL---EATGIFKKLPQLRKINFSNNKITDIEE-----GAFEGASGVNEILLTSNRLENVQHKMFKGL  104 (220)
T ss_dssp             TCSEEECCSSCCCEE---CCCCCGGGCTTCCEEECCSSCCCEECT-----TTTTTCTTCCEEECCSSCCCCCCGGGGTTC
T ss_pred             CCCEEEcCCCcCCcc---CchhhhccCCCCCEEECCCCcCCEECH-----HHhCCCCCCCEEECCCCccCccCHhHhcCC
Confidence            345666666666311   111235566666666666666665444     456666666666666666666555566666


Q ss_pred             CCCCEEEcccccccccCCC
Q 036330          164 ISLTNLSLGYCGIEGFIPN  182 (187)
Q Consensus       164 ~~L~~L~Ls~N~l~G~iP~  182 (187)
                      ++|++|+|++|++++..|.
T Consensus       105 ~~L~~L~Ls~N~l~~~~~~  123 (220)
T 2v70_A          105 ESLKTLMLRSNRITCVGND  123 (220)
T ss_dssp             SSCCEEECTTSCCCCBCTT
T ss_pred             cCCCEEECCCCcCCeECHh
Confidence            6666666666666654443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.37  E-value=2.7e-12  Score=105.35  Aligned_cols=105  Identities=26%  Similarity=0.220  Sum_probs=84.1

Q ss_pred             CCCCCCcceeecCC----------CCCCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCcccccc
Q 036330           67 SDCCRWEQVKCVNA----------TTRRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSI  136 (187)
Q Consensus        67 ~~~C~w~gv~C~~~----------~~~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~  136 (187)
                      ...|.|.|+ |+..          ...+++.|+++++.+++    ++...+..+++|++|++++|.+++..|     ..+
T Consensus        27 ~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~   96 (353)
T 2z80_A           27 SLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITY----ISNSDLQRCVNLQALVLTSNGINTIEE-----DSF   96 (353)
T ss_dssp             CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECTTSCCCEECT-----TTT
T ss_pred             CCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcc----cCHHHhccCCCCCEEECCCCccCccCH-----hhc
Confidence            567888887 6531          12368999999999842    333457889999999999999997766     678


Q ss_pred             CCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccccCCC
Q 036330          137 GSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPN  182 (187)
Q Consensus       137 ~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~  182 (187)
                      ..+++|++|++++|++++..+..++++++|++|++++|+++ .+|.
T Consensus        97 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~  141 (353)
T 2z80_A           97 SSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGE  141 (353)
T ss_dssp             TTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCS
T ss_pred             CCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCc
Confidence            99999999999999999655555899999999999999998 5665

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.36  E-value=3.8e-12  Score=95.07  Aligned_cols=88  Identities=18%  Similarity=0.155  Sum_probs=71.0

Q ss_pred             CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhc
Q 036330           83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT  162 (187)
Q Consensus        83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~  162 (187)
                      ..++.|+|++|.+++    +.+..+..+++|++|+|++|.|++..+     ..+..+++|++|+|++|++++..+..+..
T Consensus        33 ~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~i~~-----~~~~~l~~L~~L~L~~N~l~~l~~~~~~~  103 (174)
T 2r9u_A           33 TDKQRLWLNNNQITK----LEPGVFDHLVNLQQLYFNSNKLTAIPT-----GVFDKLTQLTQLDLNDNHLKSIPRGAFDN  103 (174)
T ss_dssp             TTCSEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCCCCT-----TTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             CCCcEEEeCCCCccc----cCHHHhcCCcCCCEEECCCCCCCccCh-----hHhCCcchhhEEECCCCccceeCHHHhcc
Confidence            467889999999843    223557889999999999999996433     45788999999999999999655556899


Q ss_pred             CCCCCEEEccccccccc
Q 036330          163 IISLTNLSLGYCGIEGF  179 (187)
Q Consensus       163 l~~L~~L~Ls~N~l~G~  179 (187)
                      +++|++|+|++|.++..
T Consensus       104 l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A          104 LKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             CTTCSEEECCSSCBCTT
T ss_pred             ccCCCEEEeCCCCcccc
Confidence            99999999999998843

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.36  E-value=6.5e-13  Score=112.00  Aligned_cols=103  Identities=21%  Similarity=0.248  Sum_probs=52.1

Q ss_pred             CCCCCcc--eeecCC-------CCCCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCC
Q 036330           68 DCCRWEQ--VKCVNA-------TTRRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGS  138 (187)
Q Consensus        68 ~~C~w~g--v~C~~~-------~~~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~  138 (187)
                      ..|.|.+  +.|...       ...+++.|+|+++.+++.    .+..+..+++|++|++++|.+.+.+++    ..+..
T Consensus         6 ~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~L~~n~~~~~i~~----~~~~~   77 (455)
T 3v47_A            6 SECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAEL----NETSFSRLQDLQFLKVEQQTPGLVIRN----NTFRG   77 (455)
T ss_dssp             -CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEE----CTTTTSSCTTCCEEECCCCSTTCEECT----TTTTT
T ss_pred             ceeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcC----ChhHhccCccccEEECcCCcccceECc----ccccc
Confidence            3455554  667541       124688999999988422    123345555555555555555544431    23444


Q ss_pred             CCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccc
Q 036330          139 LKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEG  178 (187)
Q Consensus       139 l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G  178 (187)
                      +++|++|+|++|++++..|..++++++|++|++++|+++|
T Consensus        78 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  117 (455)
T 3v47_A           78 LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDG  117 (455)
T ss_dssp             CTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBT
T ss_pred             cccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCc
Confidence            4444444444444444444444444444444444444443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.36  E-value=1.8e-12  Score=112.79  Aligned_cols=87  Identities=26%  Similarity=0.251  Sum_probs=63.7

Q ss_pred             CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhc
Q 036330           83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT  162 (187)
Q Consensus        83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~  162 (187)
                      ..++.|+|++|.++.    ++...|.++++|++|||++|.|++..|     ..|.++++|++|+|++|++++..|..|.+
T Consensus        52 ~~~~~LdLs~N~i~~----l~~~~f~~l~~L~~L~Ls~N~i~~i~~-----~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~  122 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRH----LGSYSFFSFPELQVLDLSRCEIQTIED-----GAYQSLSHLSTLILTGNPIQSLALGAFSG  122 (635)
T ss_dssp             TTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECTTCCCCEECT-----TTTTTCTTCCEEECTTCCCCEECGGGGTT
T ss_pred             cCCCEEEeeCCCCCC----CCHHHHhCCCCCCEEECCCCcCCCcCh-----hHhcCCCCCCEEEccCCcCCCCCHHHhcC
Confidence            368999999999953    333557788888888888888886444     56777777777777777777544556777


Q ss_pred             CCCCCEEEcccccccc
Q 036330          163 IISLTNLSLGYCGIEG  178 (187)
Q Consensus       163 l~~L~~L~Ls~N~l~G  178 (187)
                      +++|++|+|++|++++
T Consensus       123 L~~L~~L~Ls~N~l~~  138 (635)
T 4g8a_A          123 LSSLQKLVAVETNLAS  138 (635)
T ss_dssp             CTTCCEEECTTSCCCC
T ss_pred             CCCCCEEECCCCcCCC
Confidence            7777777777777773

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.35  E-value=3.7e-13  Score=109.17  Aligned_cols=72  Identities=25%  Similarity=0.365  Sum_probs=63.8

Q ss_pred             CcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCC-CCCEEEcccccccccCCCC
Q 036330          107 FLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTII-SLTNLSLGYCGIEGFIPNQ  183 (187)
Q Consensus       107 l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~-~L~~L~Ls~N~l~G~iP~~  183 (187)
                      +..+++|++|++++|.+++.+|     ..+..+++|++|++++|+++|.+|..++.++ +|++|++++|+++|.+|..
T Consensus       121 ~~~l~~L~~L~Ls~N~l~~~~p-----~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~  193 (313)
T 1ogq_A          121 LSQIKTLVTLDFSYNALSGTLP-----PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT  193 (313)
T ss_dssp             GGGCTTCCEEECCSSEEESCCC-----GGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG
T ss_pred             HhCCCCCCEEeCCCCccCCcCC-----hHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH
Confidence            5566777777777777777777     8899999999999999999999999999998 9999999999999999864

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.34  E-value=1.7e-12  Score=106.02  Aligned_cols=72  Identities=24%  Similarity=0.179  Sum_probs=61.1

Q ss_pred             CcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccccCCCC
Q 036330          107 FLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPNQ  183 (187)
Q Consensus       107 l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~  183 (187)
                      +..+++|++|++++|.+.+.+|     ..++.+++|++|++++|++.+.+|..++++++|++|+|++|++.|.+|..
T Consensus       225 l~~l~~L~~L~Ls~n~~~~~~p-----~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~  296 (328)
T 4fcg_A          225 IHHLPKLEELDLRGCTALRNYP-----PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL  296 (328)
T ss_dssp             GGGCTTCCEEECTTCTTCCBCC-----CCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGG
T ss_pred             hccCCCCCEEECcCCcchhhhH-----HHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHH
Confidence            5567777888888877777777     78888899999999998888899988999999999999999999888865

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.32  E-value=4.3e-12  Score=103.79  Aligned_cols=98  Identities=18%  Similarity=0.180  Sum_probs=50.0

Q ss_pred             CCCcceeecCC-C---------CCCEEEEEcCC-CCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCC
Q 036330           70 CRWEQVKCVNA-T---------TRRVKELSLDG-ITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGS  138 (187)
Q Consensus        70 C~w~gv~C~~~-~---------~~~v~~L~L~~-~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~  138 (187)
                      |.|..|.|... .         ..+++.|+|++ |.++    .++...|..+++|+.|+|++|.|++..|     ..|.+
T Consensus         8 C~~~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~----~~~~~~~~~l~~L~~L~l~~N~l~~~~~-----~~~~~   78 (347)
T 2ifg_A            8 HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQ----HLELRDLRGLGELRNLTIVKSGLRFVAP-----DAFHF   78 (347)
T ss_dssp             SSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCC----EECGGGSCSCCCCSEEECCSSCCCEECT-----TGGGS
T ss_pred             ccCCEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCC----CcChhHhccccCCCEEECCCCccceeCH-----HHhcC
Confidence            88888888651 0         01255555554 5552    1222334555555555555555555444     44555


Q ss_pred             CCCCCEEEccCCCCCCCChHHhhcCCCCCEEEccccccc
Q 036330          139 LKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIE  177 (187)
Q Consensus       139 l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~  177 (187)
                      +++|++|+|++|+|++..|..+..++ |+.|+|.+|.|.
T Consensus        79 l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           79 TPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             CSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            55555555555555543222333333 555555555554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.32  E-value=5.4e-12  Score=97.48  Aligned_cols=87  Identities=21%  Similarity=0.231  Sum_probs=70.2

Q ss_pred             CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhc
Q 036330           83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT  162 (187)
Q Consensus        83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~  162 (187)
                      .+++.|+|++|.++    .++...|..+++|++|+|++|.+++..|     ..+..+++|++|+|++|++++..+..+..
T Consensus        80 ~~L~~L~Ls~N~l~----~l~~~~f~~l~~L~~L~L~~N~l~~~~~-----~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  150 (220)
T 2v9t_B           80 RSLNSLVLYGNKIT----ELPKSLFEGLFSLQLLLLNANKINCLRV-----DAFQDLHNLNLLSLYDNKLQTIAKGTFSP  150 (220)
T ss_dssp             SSCCEEECCSSCCC----CCCTTTTTTCTTCCEEECCSSCCCCCCT-----TTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred             cCCCEEECCCCcCC----ccCHhHccCCCCCCEEECCCCCCCEeCH-----HHcCCCCCCCEEECCCCcCCEECHHHHhC
Confidence            34666666666663    2333446678888888888888887666     78999999999999999999877778999


Q ss_pred             CCCCCEEEcccccccc
Q 036330          163 IISLTNLSLGYCGIEG  178 (187)
Q Consensus       163 l~~L~~L~Ls~N~l~G  178 (187)
                      +++|+.|+|++|.+..
T Consensus       151 l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          151 LRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CTTCCEEECCSSCEEC
T ss_pred             CCCCCEEEeCCCCcCC
Confidence            9999999999999864

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.31  E-value=5e-12  Score=94.03  Aligned_cols=90  Identities=21%  Similarity=0.170  Sum_probs=76.3

Q ss_pred             CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhc
Q 036330           83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT  162 (187)
Q Consensus        83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~  162 (187)
                      .+++.|++++|.+++    ++...+..+++|++|++++|.+++..+     ..+..+++|++|++++|++++..+..+..
T Consensus        52 ~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~N~l~~~~~-----~~~~~l~~L~~L~l~~N~l~~~~~~~~~~  122 (177)
T 2o6r_A           52 TQLTKLSLSQNQIQS----LPDGVFDKLTKLTILYLHENKLQSLPN-----GVFDKLTQLKELALDTNQLKSVPDGIFDR  122 (177)
T ss_dssp             TTCSEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCCCCT-----TTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred             ccccEEECCCCcceE----eChhHccCCCccCEEECCCCCccccCH-----HHhhCCcccCEEECcCCcceEeCHHHhcC
Confidence            579999999999943    333457789999999999999996655     56889999999999999999655555788


Q ss_pred             CCCCCEEEcccccccccCC
Q 036330          163 IISLTNLSLGYCGIEGFIP  181 (187)
Q Consensus       163 l~~L~~L~Ls~N~l~G~iP  181 (187)
                      +++|++|++++|.+++..|
T Consensus       123 l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          123 LTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CTTCCEEECCSSCBCCCHH
T ss_pred             CcccCEEEecCCCeeccCc
Confidence            9999999999999998765

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.30  E-value=9.6e-12  Score=96.56  Aligned_cols=89  Identities=20%  Similarity=0.120  Sum_probs=74.7

Q ss_pred             CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhc
Q 036330           83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT  162 (187)
Q Consensus        83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~  162 (187)
                      .+++.|+|++|.+++    ++...+..+++|++|+|++|.++ .+|     ..+..+++|++|+|++|++++..+..+..
T Consensus        88 ~~L~~L~Ls~N~l~~----l~~~~~~~l~~L~~L~Ls~N~l~-~lp-----~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  157 (229)
T 3e6j_A           88 TQLTVLDLGTNQLTV----LPSAVFDRLVHLKELFMCCNKLT-ELP-----RGIERLTHLTHLALDQNQLKSIPHGAFDR  157 (229)
T ss_dssp             TTCCEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCC-SCC-----TTGGGCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred             CCcCEEECCCCcCCc----cChhHhCcchhhCeEeccCCccc-ccC-----cccccCCCCCEEECCCCcCCccCHHHHhC
Confidence            457777777777742    23344678999999999999999 788     78999999999999999999766677999


Q ss_pred             CCCCCEEEcccccccccCC
Q 036330          163 IISLTNLSLGYCGIEGFIP  181 (187)
Q Consensus       163 l~~L~~L~Ls~N~l~G~iP  181 (187)
                      +++|+.|++++|.+++..+
T Consensus       158 l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          158 LSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             CTTCCEEECTTSCBCTTBG
T ss_pred             CCCCCEEEeeCCCccCCcc
Confidence            9999999999999987654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.28  E-value=4.6e-12  Score=91.58  Aligned_cols=87  Identities=24%  Similarity=0.289  Sum_probs=75.2

Q ss_pred             CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCC-CChHHhh
Q 036330           83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNN-SLLPSLT  161 (187)
Q Consensus        83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G-~iP~~l~  161 (187)
                      .+++.|++++|.+++.      ..+..+++|++|++++|.+++.+|     ..+..+++|++|++++|++++ ..|..++
T Consensus        42 ~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~Ls~n~i~~~~~-----~~~~~l~~L~~L~ls~N~i~~~~~~~~~~  110 (149)
T 2je0_A           42 EELEFLSTINVGLTSI------ANLPKLNKLKKLELSDNRVSGGLE-----VLAEKCPNLTHLNLSGNKIKDLSTIEPLK  110 (149)
T ss_dssp             TTCCEEECTTSCCCCC------TTCCCCTTCCEEECCSSCCCSCTH-----HHHHHCTTCCEEECTTSCCCSHHHHGGGG
T ss_pred             CCCcEEECcCCCCCCc------hhhhcCCCCCEEECCCCcccchHH-----HHhhhCCCCCEEECCCCcCCChHHHHHHh
Confidence            5799999999998432      447789999999999999998787     777789999999999999997 3458899


Q ss_pred             cCCCCCEEEcccccccccC
Q 036330          162 TIISLTNLSLGYCGIEGFI  180 (187)
Q Consensus       162 ~l~~L~~L~Ls~N~l~G~i  180 (187)
                      .+++|++|++++|.+++..
T Consensus       111 ~l~~L~~L~l~~N~l~~~~  129 (149)
T 2je0_A          111 KLENLKSLDLFNCEVTNLN  129 (149)
T ss_dssp             GCTTCCEEECTTCGGGGST
T ss_pred             hCCCCCEEeCcCCcccchH
Confidence            9999999999999999643

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.27  E-value=1.9e-11  Score=93.09  Aligned_cols=91  Identities=22%  Similarity=0.215  Sum_probs=71.6

Q ss_pred             CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhc
Q 036330           83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT  162 (187)
Q Consensus        83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~  162 (187)
                      .+++.|++++|.+++    ++...+..+++|++|++++|.+++..+     ..+..+++|++|++++|++++..+..+..
T Consensus        76 ~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~~~-----~~~~~l~~L~~L~l~~N~l~~~~~~~~~~  146 (208)
T 2o6s_A           76 TSLTYLNLSTNQLQS----LPNGVFDKLTQLKELALNTNQLQSLPD-----GVFDKLTQLKDLRLYQNQLKSVPDGVFDR  146 (208)
T ss_dssp             TTCCEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCCCCT-----TTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred             CCcCEEECCCCcCCc----cCHhHhcCccCCCEEEcCCCcCcccCH-----hHhccCCcCCEEECCCCccceeCHHHhcc
Confidence            457777777777732    222446778888999999988886544     56889999999999999999766666899


Q ss_pred             CCCCCEEEcccccccccCCC
Q 036330          163 IISLTNLSLGYCGIEGFIPN  182 (187)
Q Consensus       163 l~~L~~L~Ls~N~l~G~iP~  182 (187)
                      +++|++|++++|.+.+..|.
T Consensus       147 l~~L~~L~l~~N~~~~~~~~  166 (208)
T 2o6s_A          147 LTSLQYIWLHDNPWDCTCPG  166 (208)
T ss_dssp             CTTCCEEECCSCCBCCCTTT
T ss_pred             CCCccEEEecCCCeecCCCC
Confidence            99999999999988777663

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.27  E-value=2e-11  Score=90.68  Aligned_cols=85  Identities=20%  Similarity=0.162  Sum_probs=71.3

Q ss_pred             EEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCC
Q 036330           85 VKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTII  164 (187)
Q Consensus        85 v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~  164 (187)
                      .+.+++++++++.++    .. +  .++|++|+|++|.+++..|     ..+..+++|++|+|++|++++..|..|..++
T Consensus        11 ~~~l~~s~n~l~~ip----~~-~--~~~l~~L~L~~N~i~~~~~-----~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~   78 (170)
T 3g39_A           11 GTTVDCSGKSLASVP----TG-I--PTTTQVLYLYDNQITKLEP-----GVFDRLTQLTRLDLDNNQLTVLPAGVFDKLT   78 (170)
T ss_dssp             TTEEECTTSCCSSCC----SC-C--CTTCSEEECCSSCCCCCCT-----TTTTTCTTCSEEECCSSCCCCCCTTTTTTCT
T ss_pred             CCEEEeCCCCcCccC----cc-C--CCCCcEEEcCCCcCCccCh-----hhhcCcccCCEEECCCCCcCccChhhccCCC
Confidence            357999999994322    22 2  3789999999999998777     7899999999999999999976666789999


Q ss_pred             CCCEEEcccccccccCCC
Q 036330          165 SLTNLSLGYCGIEGFIPN  182 (187)
Q Consensus       165 ~L~~L~Ls~N~l~G~iP~  182 (187)
                      +|++|+|++|+|++ +|.
T Consensus        79 ~L~~L~L~~N~l~~-~~~   95 (170)
T 3g39_A           79 QLTQLSLNDNQLKS-IPR   95 (170)
T ss_dssp             TCCEEECCSSCCCC-CCT
T ss_pred             CCCEEECCCCccCE-eCH
Confidence            99999999999995 554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.25  E-value=1.7e-11  Score=100.14  Aligned_cols=85  Identities=14%  Similarity=0.134  Sum_probs=73.4

Q ss_pred             EEEcCCC-CCCCCCCCCCCccCcCCCCCcEEEccC-CccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCC
Q 036330           87 ELSLDGI-TLGANSGFLNLSMFLPFQELESLDLSY-NSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTII  164 (187)
Q Consensus        87 ~L~L~~~-~l~~~~~~~~~~~l~~l~~L~~L~Ls~-N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~  164 (187)
                      .++++++ +++.    ++ . +..+++|+.|+|++ |.|++..|     ..|..+++|++|+|++|+|++..|..|++|+
T Consensus        12 ~v~~~~~n~l~~----ip-~-l~~~~~L~~L~l~~~n~l~~~~~-----~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~   80 (347)
T 2ifg_A           12 GLRCTRDGALDS----LH-H-LPGAENLTELYIENQQHLQHLEL-----RDLRGLGELRNLTIVKSGLRFVAPDAFHFTP   80 (347)
T ss_dssp             CEECCSSCCCTT----TT-T-SCSCSCCSEEECCSCSSCCEECG-----GGSCSCCCCSEEECCSSCCCEECTTGGGSCS
T ss_pred             EEEcCCCCCCCc----cC-C-CCCCCCeeEEEccCCCCCCCcCh-----hHhccccCCCEEECCCCccceeCHHHhcCCc
Confidence            4688988 7842    33 3 77889999999996 99997766     7899999999999999999998888999999


Q ss_pred             CCCEEEcccccccccCCCC
Q 036330          165 SLTNLSLGYCGIEGFIPNQ  183 (187)
Q Consensus       165 ~L~~L~Ls~N~l~G~iP~~  183 (187)
                      +|+.|+|++|+|+ .+|..
T Consensus        81 ~L~~L~l~~N~l~-~~~~~   98 (347)
T 2ifg_A           81 RLSRLNLSFNALE-SLSWK   98 (347)
T ss_dssp             CCCEEECCSSCCS-CCCST
T ss_pred             CCCEEeCCCCccc-eeCHH
Confidence            9999999999999 56654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.25  E-value=2e-11  Score=92.52  Aligned_cols=87  Identities=21%  Similarity=0.302  Sum_probs=75.4

Q ss_pred             CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhc
Q 036330           83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT  162 (187)
Q Consensus        83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~  162 (187)
                      .+++.|+|++|.++.    +....|..+++|++|+|++|.+++..|     ..+..+++|++|+|++|++++..+..+..
T Consensus        54 ~~L~~L~Ls~N~i~~----i~~~~f~~l~~L~~L~Ls~N~l~~i~~-----~~f~~l~~L~~L~L~~N~l~~~~~~~~~~  124 (193)
T 2wfh_A           54 KHLTLIDLSNNRIST----LSNQSFSNMTQLLTLILSYNRLRCIPP-----RTFDGLKSLRLLSLHGNDISVVPEGAFND  124 (193)
T ss_dssp             TTCCEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCBCCT-----TTTTTCTTCCEEECCSSCCCBCCTTTTTT
T ss_pred             cCCCEEECCCCcCCE----eCHhHccCCCCCCEEECCCCccCEeCH-----HHhCCCCCCCEEECCCCCCCeeChhhhhc
Confidence            578999999999953    333558889999999999999997766     78999999999999999999655557899


Q ss_pred             CCCCCEEEcccccccc
Q 036330          163 IISLTNLSLGYCGIEG  178 (187)
Q Consensus       163 l~~L~~L~Ls~N~l~G  178 (187)
                      +++|+.|++++|.+..
T Consensus       125 l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A          125 LSALSHLAIGANPLYC  140 (193)
T ss_dssp             CTTCCEEECCSSCEEC
T ss_pred             CccccEEEeCCCCeec
Confidence            9999999999999874

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.25  E-value=2.8e-11  Score=94.84  Aligned_cols=88  Identities=23%  Similarity=0.267  Sum_probs=57.4

Q ss_pred             CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhc
Q 036330           83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT  162 (187)
Q Consensus        83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~  162 (187)
                      .+++.|+|++|.++.    ++...+..+++|++|+|++|.+++..+     ..+..+++|++|+|++|++++..|..++.
T Consensus        83 ~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~~~-----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  153 (251)
T 3m19_A           83 TELGTLGLANNQLAS----LPLGVFDHLTQLDKLYLGGNQLKSLPS-----GVFDRLTKLKELRLNTNQLQSIPAGAFDK  153 (251)
T ss_dssp             TTCCEEECTTSCCCC----CCTTTTTTCTTCCEEECCSSCCCCCCT-----TTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             CcCCEEECCCCcccc----cChhHhcccCCCCEEEcCCCcCCCcCh-----hHhccCCcccEEECcCCcCCccCHHHcCc
Confidence            346666666666632    222345667778888888887775443     44567777777777777777555556777


Q ss_pred             CCCCCEEEccccccccc
Q 036330          163 IISLTNLSLGYCGIEGF  179 (187)
Q Consensus       163 l~~L~~L~Ls~N~l~G~  179 (187)
                      +++|++|+|++|++++.
T Consensus       154 l~~L~~L~L~~N~l~~~  170 (251)
T 3m19_A          154 LTNLQTLSLSTNQLQSV  170 (251)
T ss_dssp             CTTCCEEECCSSCCSCC
T ss_pred             CcCCCEEECCCCcCCcc
Confidence            77777777777777743

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.24  E-value=2.6e-11  Score=96.18  Aligned_cols=95  Identities=22%  Similarity=0.178  Sum_probs=46.2

Q ss_pred             CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCC------------------cc-ccccCCCCCCC
Q 036330           83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKE------------------GM-YLSIGSLKWLK  143 (187)
Q Consensus        83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~------------------~~-~~~~~~l~~L~  143 (187)
                      ..++.|++++|.+++..    ...+..+++|++|++++|.+++..+..                  .. +..+..+++|+
T Consensus       109 ~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  184 (272)
T 3rfs_A          109 TNLKELVLVENQLQSLP----DGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLK  184 (272)
T ss_dssp             TTCCEEECTTSCCCCCC----TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             cCCCEEECCCCcCCccC----HHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCC
Confidence            35677777777763221    122444555555555555555333200                  00 03344555555


Q ss_pred             EEEccCCCCCCCChHHhhcCCCCCEEEcccccccccCC
Q 036330          144 ILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIP  181 (187)
Q Consensus       144 ~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP  181 (187)
                      +|++++|++++..|..++.+++|++|++++|.+.|..|
T Consensus       185 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  222 (272)
T 3rfs_A          185 DLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  222 (272)
T ss_dssp             EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             EEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc
Confidence            55555555555444445555555555555555444443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.24  E-value=3.4e-11  Score=89.89  Aligned_cols=85  Identities=19%  Similarity=0.159  Sum_probs=70.2

Q ss_pred             EEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCC
Q 036330           86 KELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIIS  165 (187)
Q Consensus        86 ~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~  165 (187)
                      +.+++++++++.    ++.. +  .++|++|+|++|.+++..|     ..+..+++|++|+|++|++++..+..|.++++
T Consensus        15 ~~l~~~~n~l~~----iP~~-~--~~~L~~L~Ls~N~l~~~~~-----~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~   82 (174)
T 2r9u_A           15 TLVNCQNIRLAS----VPAG-I--PTDKQRLWLNNNQITKLEP-----GVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQ   82 (174)
T ss_dssp             SEEECCSSCCSS----CCSC-C--CTTCSEEECCSSCCCCCCT-----TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             cEEEeCCCCCCc----cCCC-c--CCCCcEEEeCCCCccccCH-----HHhcCCcCCCEEECCCCCCCccChhHhCCcch
Confidence            578999998842    2222 2  2789999999999998777     78999999999999999999755556789999


Q ss_pred             CCEEEcccccccccCCCC
Q 036330          166 LTNLSLGYCGIEGFIPNQ  183 (187)
Q Consensus       166 L~~L~Ls~N~l~G~iP~~  183 (187)
                      |++|+|++|+|+ .+|..
T Consensus        83 L~~L~L~~N~l~-~l~~~   99 (174)
T 2r9u_A           83 LTQLDLNDNHLK-SIPRG   99 (174)
T ss_dssp             CCEEECCSSCCC-CCCTT
T ss_pred             hhEEECCCCccc-eeCHH
Confidence            999999999999 45553

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.23  E-value=1.1e-11  Score=112.79  Aligned_cols=102  Identities=22%  Similarity=0.250  Sum_probs=53.7

Q ss_pred             CCCcceeecCCCCCCEEEEEcCCCCCCCCCC---------------------CCCCccCcCCCCCcEEEccCCccccccC
Q 036330           70 CRWEQVKCVNATTRRVKELSLDGITLGANSG---------------------FLNLSMFLPFQELESLDLSYNSFYGVYE  128 (187)
Q Consensus        70 C~w~gv~C~~~~~~~v~~L~L~~~~l~~~~~---------------------~~~~~~l~~l~~L~~L~Ls~N~l~g~ip  128 (187)
                      |.|..|.+ -  ..+++.|+|++|.+++...                     .+.+..+.++++|++|+|++|.+++..|
T Consensus        14 ~~L~~vP~-l--p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p   90 (844)
T 3j0a_A           14 CNLTQVPQ-V--LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP   90 (844)
T ss_dssp             CCSSCCCS-S--CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT
T ss_pred             CCCCCCCC-C--CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCH
Confidence            34566655 2  3567788888877742111                     1112224444555555555555554444


Q ss_pred             CCccccccCCCCCCCEEEccCCCCCCCChHH--hhcCCCCCEEEccccccccc
Q 036330          129 KEGMYLSIGSLKWLKILNLYSNNVNNSLLPS--LTTIISLTNLSLGYCGIEGF  179 (187)
Q Consensus       129 ~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~--l~~l~~L~~L~Ls~N~l~G~  179 (187)
                           ..+.++++|++|+|++|++++.+|..  ++++++|++|+|++|.+++.
T Consensus        91 -----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~  138 (844)
T 3j0a_A           91 -----DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL  138 (844)
T ss_dssp             -----TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCC
T ss_pred             -----hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccc
Confidence                 45555555555555555555544443  55555555555555555543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.23  E-value=3.4e-11  Score=86.93  Aligned_cols=86  Identities=30%  Similarity=0.296  Sum_probs=74.0

Q ss_pred             CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhc
Q 036330           83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT  162 (187)
Q Consensus        83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~  162 (187)
                      .+++.|+++++.++  .+.++ ..+..+++|++|++++|.+++. +      .++.+++|++|++++|++++.+|..++.
T Consensus        17 ~~l~~L~l~~n~l~--~~~~~-~~~~~l~~L~~L~l~~n~l~~~-~------~~~~l~~L~~L~Ls~n~i~~~~~~~~~~   86 (149)
T 2je0_A           17 SDVKELVLDNSRSN--EGKLE-GLTDEFEELEFLSTINVGLTSI-A------NLPKLNKLKKLELSDNRVSGGLEVLAEK   86 (149)
T ss_dssp             GGCSEEECTTCBCB--TTBCC-SCCTTCTTCCEEECTTSCCCCC-T------TCCCCTTCCEEECCSSCCCSCTHHHHHH
T ss_pred             ccCeEEEccCCcCC--hhHHH-HHHhhcCCCcEEECcCCCCCCc-h------hhhcCCCCCEEECCCCcccchHHHHhhh
Confidence            46899999999983  02232 3467899999999999999865 4      6889999999999999999889999999


Q ss_pred             CCCCCEEEcccccccc
Q 036330          163 IISLTNLSLGYCGIEG  178 (187)
Q Consensus       163 l~~L~~L~Ls~N~l~G  178 (187)
                      +++|++|++++|++++
T Consensus        87 l~~L~~L~ls~N~i~~  102 (149)
T 2je0_A           87 CPNLTHLNLSGNKIKD  102 (149)
T ss_dssp             CTTCCEEECTTSCCCS
T ss_pred             CCCCCEEECCCCcCCC
Confidence            9999999999999986

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.22  E-value=2.3e-11  Score=100.45  Aligned_cols=107  Identities=23%  Similarity=0.297  Sum_probs=56.9

Q ss_pred             CCCcceeecCC--------CCCCEEEEEcCCCCCCCCCCC---------------------CCCccCcCCCCCcEEEccC
Q 036330           70 CRWEQVKCVNA--------TTRRVKELSLDGITLGANSGF---------------------LNLSMFLPFQELESLDLSY  120 (187)
Q Consensus        70 C~w~gv~C~~~--------~~~~v~~L~L~~~~l~~~~~~---------------------~~~~~l~~l~~L~~L~Ls~  120 (187)
                      |.+..+.|...        ....++.|+|++|.++.....                     +....|..+++|++|+|++
T Consensus        18 C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           18 CASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             EETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             ECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            56777777541        112466788888877422110                     0111233444555555555


Q ss_pred             CccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccccCCC
Q 036330          121 NSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPN  182 (187)
Q Consensus       121 N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~  182 (187)
                      |.+++..+     ..+..+++|++|+|++|++++..|..|.++++|+.|+|++|+|+ .+|.
T Consensus        98 N~l~~~~~-----~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~  153 (361)
T 2xot_A           98 NHLHTLDE-----FLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPV  153 (361)
T ss_dssp             SCCCEECT-----TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCG
T ss_pred             CcCCcCCH-----HHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCH
Confidence            55543322     34555666666666666666555556666666666666666666 3443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.22  E-value=2.6e-11  Score=105.72  Aligned_cols=86  Identities=26%  Similarity=0.202  Sum_probs=50.6

Q ss_pred             CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhc
Q 036330           83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT  162 (187)
Q Consensus        83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~  162 (187)
                      .+++.|+|++|.+++    +....+..+++|++|++++|.+++..|     ..|.++++|++|+|++|++++..|..|++
T Consensus        32 ~~l~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~i~~-----~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~  102 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKI----LKSYSFSNFSELQWLDLSRCEIETIED-----KAWHGLHHLSNLILTGNPIQSFSPGSFSG  102 (606)
T ss_dssp             TTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECTTCCCCEECT-----TTTTTCTTCCEEECTTCCCCCCCTTSSTT
T ss_pred             CCcCEEECCCCCcCE----eChhhccCCccCcEEeCCCCcccccCH-----HHhhchhhcCEeECCCCcccccChhhcCC
Confidence            467888888888742    222335566666666666666665444     45555555555555555555554555555


Q ss_pred             CCCCCEEEccccccc
Q 036330          163 IISLTNLSLGYCGIE  177 (187)
Q Consensus       163 l~~L~~L~Ls~N~l~  177 (187)
                      +++|++|++++|+++
T Consensus       103 l~~L~~L~L~~n~l~  117 (606)
T 3vq2_A          103 LTSLENLVAVETKLA  117 (606)
T ss_dssp             CTTCCEEECTTSCCC
T ss_pred             cccCCEEEccCCccc
Confidence            555555555555555

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.21  E-value=2.1e-11  Score=105.94  Aligned_cols=92  Identities=21%  Similarity=0.183  Sum_probs=73.1

Q ss_pred             CEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcC
Q 036330           84 RVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTI  163 (187)
Q Consensus        84 ~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l  163 (187)
                      .++.+++++|.+   .....+..+..+++|++|||++|.+++..|     ..|.++++|++|+|++|++++..|..+..+
T Consensus       470 ~L~~L~Ls~N~~---~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~-----~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l  541 (635)
T 4g8a_A          470 SLEVLKMAGNSF---QENFLPDIFTELRNLTFLDLSQCQLEQLSP-----TAFNSLSSLQVLNMSHNNFFSLDTFPYKCL  541 (635)
T ss_dssp             TCCEEECTTCEE---GGGEECSCCTTCTTCCEEECTTSCCCEECT-----TTTTTCTTCCEEECTTSCCCBCCCGGGTTC
T ss_pred             hhhhhhhhhccc---ccccCchhhhhccccCEEECCCCccCCcCh-----HHHcCCCCCCEEECCCCcCCCCChhHHhCC
Confidence            455666666653   111223457788999999999999998777     789999999999999999998888889999


Q ss_pred             CCCCEEEcccccccccCCCC
Q 036330          164 ISLTNLSLGYCGIEGFIPNQ  183 (187)
Q Consensus       164 ~~L~~L~Ls~N~l~G~iP~~  183 (187)
                      ++|++|+|++|+|++..|..
T Consensus       542 ~~L~~L~Ls~N~l~~~~~~~  561 (635)
T 4g8a_A          542 NSLQVLDYSLNHIMTSKKQE  561 (635)
T ss_dssp             TTCCEEECTTSCCCBCCSSC
T ss_pred             CCCCEEECCCCcCCCCCHHH
Confidence            99999999999999777654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.21  E-value=5.2e-11  Score=94.45  Aligned_cols=88  Identities=24%  Similarity=0.273  Sum_probs=61.0

Q ss_pred             CCCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhh
Q 036330           82 TRRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLT  161 (187)
Q Consensus        82 ~~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~  161 (187)
                      ..+++.|++++|.+++    ++...+..+++|++|++++|.+++..+     ..+..+++|++|++++|++++..|..++
T Consensus        84 l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~~L~~L~L~~n~l~~~~~~~~~  154 (272)
T 3rfs_A           84 LTNLTYLILTGNQLQS----LPNGVFDKLTNLKELVLVENQLQSLPD-----GVFDKLTNLTYLNLAHNQLQSLPKGVFD  154 (272)
T ss_dssp             CTTCCEEECTTSCCCC----CCTTTTTTCTTCCEEECTTSCCCCCCT-----TTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             CCCCCEEECCCCccCc----cChhHhcCCcCCCEEECCCCcCCccCH-----HHhccCCCCCEEECCCCccCccCHHHhc
Confidence            3579999999999943    333457889999999999999997655     4455666666666666666654444455


Q ss_pred             cCCCCCEEEcccccccc
Q 036330          162 TIISLTNLSLGYCGIEG  178 (187)
Q Consensus       162 ~l~~L~~L~Ls~N~l~G  178 (187)
                      .+++|++|++++|++++
T Consensus       155 ~l~~L~~L~l~~n~l~~  171 (272)
T 3rfs_A          155 KLTNLTELDLSYNQLQS  171 (272)
T ss_dssp             TCTTCCEEECCSSCCCC
T ss_pred             cCccCCEEECCCCCcCc
Confidence            56666666666666653

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.20  E-value=4e-11  Score=105.00  Aligned_cols=88  Identities=23%  Similarity=0.169  Sum_probs=77.0

Q ss_pred             CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCC-hHHhh
Q 036330           83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSL-LPSLT  161 (187)
Q Consensus        83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~i-P~~l~  161 (187)
                      .+++.|+|++|.++    .++ ..+..+++|+.|+|++|.+++ +|      .++.+++|++|+|++|++++.. |..++
T Consensus       463 ~~L~~L~Ls~N~l~----~lp-~~~~~l~~L~~L~Ls~N~l~~-lp------~l~~l~~L~~L~Ls~N~l~~~~~p~~l~  530 (567)
T 1dce_A          463 LLVTHLDLSHNRLR----ALP-PALAALRCLEVLQASDNALEN-VD------GVANLPRLQELLLCNNRLQQSAAIQPLV  530 (567)
T ss_dssp             TTCCEEECCSSCCC----CCC-GGGGGCTTCCEEECCSSCCCC-CG------GGTTCSSCCEEECCSSCCCSSSTTGGGG
T ss_pred             ccCcEeecCccccc----ccc-hhhhcCCCCCEEECCCCCCCC-Cc------ccCCCCCCcEEECCCCCCCCCCCcHHHh
Confidence            46899999999994    233 358889999999999999997 55      6899999999999999999876 99999


Q ss_pred             cCCCCCEEEcccccccccCCC
Q 036330          162 TIISLTNLSLGYCGIEGFIPN  182 (187)
Q Consensus       162 ~l~~L~~L~Ls~N~l~G~iP~  182 (187)
                      .+++|+.|+|++|.|+|..|.
T Consensus       531 ~l~~L~~L~L~~N~l~~~~~~  551 (567)
T 1dce_A          531 SCPRLVLLNLQGNSLCQEEGI  551 (567)
T ss_dssp             GCTTCCEEECTTSGGGGSSSC
T ss_pred             cCCCCCEEEecCCcCCCCccH
Confidence            999999999999999977653

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.19  E-value=5.3e-11  Score=100.84  Aligned_cols=101  Identities=23%  Similarity=0.269  Sum_probs=79.0

Q ss_pred             CcceeecCC--------CCCCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCC
Q 036330           72 WEQVKCVNA--------TTRRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLK  143 (187)
Q Consensus        72 w~gv~C~~~--------~~~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~  143 (187)
                      |..+.|...        ....++.|+|++|++++    +.+..|..+++|++|+|++|.+++..|     ..+.++++|+
T Consensus        56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~----~~~~~~~~l~~L~~L~Ls~n~i~~~~~-----~~~~~l~~L~  126 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQM----IQADTFRHLHHLEVLQLGRNSIRQIEV-----GAFNGLASLN  126 (452)
T ss_dssp             SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCE----ECTTTTTTCTTCCEEECCSSCCCEECT-----TTTTTCTTCC
T ss_pred             CcEEEECCCCcCccCCCCCCCccEEECcCCcCce----ECHHHcCCCCCCCEEECCCCccCCcCh-----hhccCcccCC
Confidence            566777541        12468999999999842    333557889999999999999987766     7788899999


Q ss_pred             EEEccCCCCCCCChHHhhcCCCCCEEEcccccccccCCC
Q 036330          144 ILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPN  182 (187)
Q Consensus       144 ~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~  182 (187)
                      +|+|++|++++..+..+..+++|++|+|++|+++ .+|.
T Consensus       127 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~  164 (452)
T 3zyi_A          127 TLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPS  164 (452)
T ss_dssp             EEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCC-EECT
T ss_pred             EEECCCCcCCccChhhhcccCCCCEEECCCCCcc-eeCH
Confidence            9999999998666666888899999999999888 4554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.18  E-value=3.9e-11  Score=88.31  Aligned_cols=86  Identities=27%  Similarity=0.337  Sum_probs=62.0

Q ss_pred             CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCC-ChHHhh
Q 036330           83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNS-LLPSLT  161 (187)
Q Consensus        83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~-iP~~l~  161 (187)
                      .+++.|++++|.+++.      ..+..+++|++|++++|.+++.+|     ..+..+++|++|++++|++++. .+..+.
T Consensus        49 ~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~Ls~N~l~~~~~-----~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~  117 (168)
T 2ell_A           49 VNLEFLSLINVGLISV------SNLPKLPKLKKLELSENRIFGGLD-----MLAEKLPNLTHLNLSGNKLKDISTLEPLK  117 (168)
T ss_dssp             GGCCEEEEESSCCCCC------SSCCCCSSCCEEEEESCCCCSCCC-----HHHHHCTTCCEEECBSSSCCSSGGGGGGS
T ss_pred             CCCCEEeCcCCCCCCh------hhhccCCCCCEEECcCCcCchHHH-----HHHhhCCCCCEEeccCCccCcchhHHHHh
Confidence            4578888888887422      346677888888888888887666     5566677888888888887752 226677


Q ss_pred             cCCCCCEEEccccccccc
Q 036330          162 TIISLTNLSLGYCGIEGF  179 (187)
Q Consensus       162 ~l~~L~~L~Ls~N~l~G~  179 (187)
                      .+++|++|++++|.+++.
T Consensus       118 ~l~~L~~L~l~~N~l~~~  135 (168)
T 2ell_A          118 KLECLKSLDLFNCEVTNL  135 (168)
T ss_dssp             SCSCCCEEECCSSGGGTS
T ss_pred             cCCCCCEEEeeCCcCcch
Confidence            778888888888877743

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.18  E-value=5e-11  Score=90.20  Aligned_cols=65  Identities=20%  Similarity=0.300  Sum_probs=32.4

Q ss_pred             CcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEccccccc
Q 036330          107 FLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIE  177 (187)
Q Consensus       107 l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~  177 (187)
                      +..+++|++|++++|.+++..|     ..+..+++|++|++++|++.+.+| .+..+++|++|++++|+++
T Consensus       108 l~~l~~L~~L~Ls~n~i~~~~~-----~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~  172 (197)
T 4ezg_A          108 LSGLTSLTLLDISHSAHDDSIL-----TKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH  172 (197)
T ss_dssp             CTTCTTCCEEECCSSBCBGGGH-----HHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCC
T ss_pred             hcCCCCCCEEEecCCccCcHhH-----HHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCc
Confidence            3444555555555555554444     445555555555555555222344 3555555555555555554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.18  E-value=8e-11  Score=100.03  Aligned_cols=101  Identities=26%  Similarity=0.253  Sum_probs=61.5

Q ss_pred             CcceeecCC--------CCCCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCC
Q 036330           72 WEQVKCVNA--------TTRRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLK  143 (187)
Q Consensus        72 w~gv~C~~~--------~~~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~  143 (187)
                      |..|.|...        ....++.|+|++|.+++    +....|..+++|++|+|++|.+++..|     ..+.++++|+
T Consensus        13 ~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~i~~~~~-----~~~~~l~~L~   83 (477)
T 2id5_A           13 DRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKT----LNQDEFASFPHLEELELNENIVSAVEP-----GAFNNLFNLR   83 (477)
T ss_dssp             TTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCE----ECTTTTTTCTTCCEEECTTSCCCEECT-----TTTTTCTTCC
T ss_pred             CCEEEeCCCCcCcCCCCCCCCCcEEECCCCccce----ECHhHccCCCCCCEEECCCCccCEeCh-----hhhhCCccCC
Confidence            567777531        12357888888888842    222446667777777777777776555     5566666666


Q ss_pred             EEEccCCCCCCCChHHhhcCCCCCEEEcccccccccCC
Q 036330          144 ILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIP  181 (187)
Q Consensus       144 ~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP  181 (187)
                      +|+|++|++++..+..|.++++|++|+|++|++++.+|
T Consensus        84 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~  121 (477)
T 2id5_A           84 TLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLD  121 (477)
T ss_dssp             EEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECT
T ss_pred             EEECCCCcCCccCcccccCCCCCCEEECCCCccccCCh
Confidence            66666666654333345556666666666666654443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.17  E-value=3.3e-11  Score=99.47  Aligned_cols=88  Identities=24%  Similarity=0.240  Sum_probs=70.7

Q ss_pred             CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHh--
Q 036330           83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSL--  160 (187)
Q Consensus        83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l--  160 (187)
                      .+++.|+|++|.++    .++...|..+++|++|+|++|.+++..|     ..+..+++|++|+|++|++++ +|..+  
T Consensus        88 ~~L~~L~Ls~N~l~----~~~~~~~~~l~~L~~L~L~~N~i~~~~~-----~~~~~l~~L~~L~L~~N~l~~-l~~~~~~  157 (361)
T 2xot_A           88 PNLRYLDLSSNHLH----TLDEFLFSDLQALEVLLLYNNHIVVVDR-----NAFEDMAQLQKLYLSQNQISR-FPVELIK  157 (361)
T ss_dssp             TTCCEEECCSSCCC----EECTTTTTTCTTCCEEECCSSCCCEECT-----TTTTTCTTCCEEECCSSCCCS-CCGGGTC
T ss_pred             CCCCEEECCCCcCC----cCCHHHhCCCcCCCEEECCCCcccEECH-----HHhCCcccCCEEECCCCcCCe-eCHHHhc
Confidence            35677777777763    2233457789999999999999997777     789999999999999999995 66554  


Q ss_pred             --hcCCCCCEEEcccccccccCC
Q 036330          161 --TTIISLTNLSLGYCGIEGFIP  181 (187)
Q Consensus       161 --~~l~~L~~L~Ls~N~l~G~iP  181 (187)
                        ..+++|+.|+|++|+|+ .+|
T Consensus       158 ~~~~l~~L~~L~L~~N~l~-~l~  179 (361)
T 2xot_A          158 DGNKLPKLMLLDLSSNKLK-KLP  179 (361)
T ss_dssp             ----CTTCCEEECCSSCCC-CCC
T ss_pred             CcccCCcCCEEECCCCCCC-ccC
Confidence              67999999999999999 555

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.17  E-value=5.5e-11  Score=104.24  Aligned_cols=88  Identities=17%  Similarity=0.217  Sum_probs=50.7

Q ss_pred             EEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCC
Q 036330           85 VKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTII  164 (187)
Q Consensus        85 v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~  164 (187)
                      ++.|+|+++.+++    +++..+..+++|++|+|++|.+++..|     ..++.+++|++|+|++|++++..|..|++++
T Consensus        77 L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~  147 (597)
T 3oja_B           77 VELLNLNDLQIEE----IDTYAFAYAHTIQKLYMGFNAIRYLPP-----HVFQNVPLLTVLVLERNDLSSLPRGIFHNTP  147 (597)
T ss_dssp             CSEEECTTSCCCE----ECTTTTTTCTTCCEEECCSSCCCCCCT-----TTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             CcEEECCCCCCCC----CChHHhcCCCCCCEEECCCCcCCCCCH-----HHHcCCCCCCEEEeeCCCCCCCCHHHhccCC
Confidence            4455555555521    122235566677777777777766544     4556666666666666666643333346666


Q ss_pred             CCCEEEcccccccccCC
Q 036330          165 SLTNLSLGYCGIEGFIP  181 (187)
Q Consensus       165 ~L~~L~Ls~N~l~G~iP  181 (187)
                      +|++|+|++|.+++..|
T Consensus       148 ~L~~L~Ls~N~l~~~~~  164 (597)
T 3oja_B          148 KLTTLSMSNNNLERIED  164 (597)
T ss_dssp             TCCEEECCSSCCCBCCT
T ss_pred             CCCEEEeeCCcCCCCCh
Confidence            66666666666665444

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.17  E-value=1.1e-10  Score=93.70  Aligned_cols=72  Identities=22%  Similarity=0.149  Sum_probs=44.8

Q ss_pred             cCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccccCCCC
Q 036330          106 MFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPNQ  183 (187)
Q Consensus       106 ~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~  183 (187)
                      .+..+++|++|+|++|.+++..+     ..+..+++|++|+|++|++++..+..+..+++|+.|+|++|+++ .||..
T Consensus       119 ~~~~l~~L~~L~L~~N~l~~~~~-----~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~  190 (290)
T 1p9a_G          119 ALRGLGELQELYLKGNELKTLPP-----GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKG  190 (290)
T ss_dssp             TTTTCTTCCEEECTTSCCCCCCT-----TTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTT
T ss_pred             HHcCCCCCCEEECCCCCCCccCh-----hhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChh
Confidence            35556666666666666664333     44566677777777777776433334566777777777777776 56653

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.17  E-value=4.2e-11  Score=104.90  Aligned_cols=86  Identities=21%  Similarity=0.234  Sum_probs=76.3

Q ss_pred             CEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcC
Q 036330           84 RVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTI  163 (187)
Q Consensus        84 ~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l  163 (187)
                      .++.|+|++|.+++    ++ . +..+++|+.|+|++|.++ .+|     ..++.+++|++|+|++|++++ +| .++++
T Consensus       442 ~L~~L~Ls~n~l~~----lp-~-~~~l~~L~~L~Ls~N~l~-~lp-----~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l  507 (567)
T 1dce_A          442 DVRVLHLAHKDLTV----LC-H-LEQLLLVTHLDLSHNRLR-ALP-----PALAALRCLEVLQASDNALEN-VD-GVANL  507 (567)
T ss_dssp             TCSEEECTTSCCSS----CC-C-GGGGTTCCEEECCSSCCC-CCC-----GGGGGCTTCCEEECCSSCCCC-CG-GGTTC
T ss_pred             CceEEEecCCCCCC----Cc-C-ccccccCcEeecCccccc-ccc-----hhhhcCCCCCEEECCCCCCCC-Cc-ccCCC
Confidence            47789999999943    22 2 788999999999999999 888     899999999999999999997 88 89999


Q ss_pred             CCCCEEEcccccccccC-CCC
Q 036330          164 ISLTNLSLGYCGIEGFI-PNQ  183 (187)
Q Consensus       164 ~~L~~L~Ls~N~l~G~i-P~~  183 (187)
                      ++|+.|+|++|+|++.+ |..
T Consensus       508 ~~L~~L~Ls~N~l~~~~~p~~  528 (567)
T 1dce_A          508 PRLQELLLCNNRLQQSAAIQP  528 (567)
T ss_dssp             SSCCEEECCSSCCCSSSTTGG
T ss_pred             CCCcEEECCCCCCCCCCCcHH
Confidence            99999999999999776 653

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.17  E-value=5.4e-11  Score=87.54  Aligned_cols=86  Identities=27%  Similarity=0.287  Sum_probs=74.0

Q ss_pred             CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhc
Q 036330           83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT  162 (187)
Q Consensus        83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~  162 (187)
                      .+++.|+++++.++  .+.++ ..+..+++|++|++++|.+++. +      .+..+++|++|++++|++++.+|..+..
T Consensus        24 ~~L~~L~l~~n~l~--~~~i~-~~~~~l~~L~~L~l~~n~l~~~-~------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~   93 (168)
T 2ell_A           24 AAVRELVLDNCKSN--DGKIE-GLTAEFVNLEFLSLINVGLISV-S------NLPKLPKLKKLELSENRIFGGLDMLAEK   93 (168)
T ss_dssp             TSCSEEECCSCBCB--TTBCS-SCCGGGGGCCEEEEESSCCCCC-S------SCCCCSSCCEEEEESCCCCSCCCHHHHH
T ss_pred             ccCCEEECCCCCCC--hhhHH-HHHHhCCCCCEEeCcCCCCCCh-h------hhccCCCCCEEECcCCcCchHHHHHHhh
Confidence            56999999999983  12232 3367889999999999999865 4      6889999999999999999889999999


Q ss_pred             CCCCCEEEcccccccc
Q 036330          163 IISLTNLSLGYCGIEG  178 (187)
Q Consensus       163 l~~L~~L~Ls~N~l~G  178 (187)
                      +++|++|++++|++++
T Consensus        94 l~~L~~L~Ls~N~l~~  109 (168)
T 2ell_A           94 LPNLTHLNLSGNKLKD  109 (168)
T ss_dssp             CTTCCEEECBSSSCCS
T ss_pred             CCCCCEEeccCCccCc
Confidence            9999999999999985

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.17  E-value=5.6e-11  Score=100.13  Aligned_cols=71  Identities=28%  Similarity=0.268  Sum_probs=43.2

Q ss_pred             CcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccccCCC
Q 036330          107 FLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPN  182 (187)
Q Consensus       107 l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~  182 (187)
                      +..+++|++|++++|.+++..|     ..+..+++|++|++++|++++..+..+..+++|++|++++|.+++.+|.
T Consensus       343 ~~~l~~L~~L~Ls~N~l~~~~~-----~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          343 FENLDKLEVLDLSYNHIRALGD-----QSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             GTTCTTCCEEECCSSCCCEECT-----TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             hcCcccCCEEECCCCcccccCh-----hhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence            4445555555555555555444     5566666666666666666654444456666666666666666666663

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.16  E-value=1.1e-11  Score=111.36  Aligned_cols=87  Identities=21%  Similarity=0.209  Sum_probs=43.2

Q ss_pred             CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhc
Q 036330           83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT  162 (187)
Q Consensus        83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~  162 (187)
                      ..++.|+|++|.+..+    +.. +..+++|++|+|++|.|+ .+|     ..++.+++|++|+|++|+|+ .+|..+++
T Consensus       224 ~~L~~L~Ls~n~l~~l----~~~-~~~l~~L~~L~Ls~N~l~-~lp-----~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~  291 (727)
T 4b8c_D          224 QLWHALDLSNLQIFNI----SAN-IFKYDFLTRLYLNGNSLT-ELP-----AEIKNLSNLRVLDLSHNRLT-SLPAELGS  291 (727)
T ss_dssp             CCCCEEECTTSCCSCC----CGG-GGGCCSCSCCBCTTSCCS-CCC-----GGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred             CCCcEEECCCCCCCCC----Chh-hcCCCCCCEEEeeCCcCc-ccC-----hhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence            4577788888877321    111 224445555555555554 444     44444444444444444444 44444444


Q ss_pred             CCCCCEEEcccccccccCCC
Q 036330          163 IISLTNLSLGYCGIEGFIPN  182 (187)
Q Consensus       163 l~~L~~L~Ls~N~l~G~iP~  182 (187)
                      |++|++|+|++|.|+ .||.
T Consensus       292 l~~L~~L~L~~N~l~-~lp~  310 (727)
T 4b8c_D          292 CFQLKYFYFFDNMVT-TLPW  310 (727)
T ss_dssp             GTTCSEEECCSSCCC-CCCS
T ss_pred             CCCCCEEECCCCCCC-ccCh
Confidence            444444444444443 4443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.16  E-value=1.2e-10  Score=92.25  Aligned_cols=67  Identities=16%  Similarity=0.131  Sum_probs=40.4

Q ss_pred             CcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccc
Q 036330          107 FLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEG  178 (187)
Q Consensus       107 l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G  178 (187)
                      +..+++|++|++++|.+++..|     ..+..+++|++|++++|++++..+..++.+++|++|++++|++++
T Consensus        72 ~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  138 (276)
T 2z62_A           72 YQSLSHLSTLILTGNPIQSLAL-----GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS  138 (276)
T ss_dssp             TTTCTTCCEEECTTCCCCEECT-----TTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC
T ss_pred             ccCCcCCCEEECCCCccCccCh-----hhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccce
Confidence            4445555555555555554444     456666666666666666665444456666666666666666664

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.15  E-value=1.5e-10  Score=92.94  Aligned_cols=90  Identities=23%  Similarity=0.197  Sum_probs=67.7

Q ss_pred             CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhc
Q 036330           83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT  162 (187)
Q Consensus        83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~  162 (187)
                      .+++.|++++|.++.    ++ ..+..+++|++|++++|.+++..|     ..+..+++|++|+|++|++++..|..+..
T Consensus        77 ~~L~~L~Ls~N~l~~----l~-~~~~~l~~L~~L~l~~N~l~~l~~-----~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  146 (290)
T 1p9a_G           77 PVLGTLDLSHNQLQS----LP-LLGQTLPALTVLDVSFNRLTSLPL-----GALRGLGELQELYLKGNELKTLPPGLLTP  146 (290)
T ss_dssp             TTCCEEECCSSCCSS----CC-CCTTTCTTCCEEECCSSCCCCCCS-----STTTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred             CcCCEEECCCCcCCc----Cc-hhhccCCCCCEEECCCCcCcccCH-----HHHcCCCCCCEEECCCCCCCccChhhccc
Confidence            345666666666621    21 235677888888888888886555     67888999999999999998766666788


Q ss_pred             CCCCCEEEcccccccccCCCC
Q 036330          163 IISLTNLSLGYCGIEGFIPNQ  183 (187)
Q Consensus       163 l~~L~~L~Ls~N~l~G~iP~~  183 (187)
                      +++|+.|+|++|+++ .+|..
T Consensus       147 l~~L~~L~L~~N~l~-~l~~~  166 (290)
T 1p9a_G          147 TPKLEKLSLANNNLT-ELPAG  166 (290)
T ss_dssp             CTTCCEEECTTSCCS-CCCTT
T ss_pred             ccCCCEEECCCCcCC-ccCHH
Confidence            899999999999998 56653

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.14  E-value=2e-10  Score=90.90  Aligned_cols=66  Identities=24%  Similarity=0.334  Sum_probs=40.3

Q ss_pred             CcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEccccccc
Q 036330          107 FLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIE  177 (187)
Q Consensus       107 l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~  177 (187)
                      +..+++|++|++++|.+++..+     ..+..+++|++|++++|++++..|..+..+++|++|++++|+++
T Consensus       129 ~~~l~~L~~L~Ls~n~l~~~~~-----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  194 (270)
T 2o6q_A          129 FDSLTKLTYLSLGYNELQSLPK-----GVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK  194 (270)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCT-----TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             hCcCcCCCEEECCCCcCCccCH-----hHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC
Confidence            4455555566666655553322     34566667777777777766544455666677777777777766

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.14  E-value=1.9e-10  Score=91.51  Aligned_cols=67  Identities=24%  Similarity=0.212  Sum_probs=43.1

Q ss_pred             CcCCCCCcEEEccCCc-cccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccc
Q 036330          107 FLPFQELESLDLSYNS-FYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEG  178 (187)
Q Consensus       107 l~~l~~L~~L~Ls~N~-l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G  178 (187)
                      +..+++|++|++++|. +....|     ..+..+++|++|++++|++++..|..+.++++|++|++++|++++
T Consensus        76 ~~~l~~L~~L~l~~n~~l~~~~~-----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  143 (285)
T 1ozn_A           76 FTGLALLEQLDLSDNAQLRSVDP-----ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA  143 (285)
T ss_dssp             TTTCTTCCEEECCSCTTCCCCCT-----TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             cCCccCCCEEeCCCCCCccccCH-----HHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccc
Confidence            4455566666666665 443323     556667777777777777776666667777777777777777763

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.13  E-value=8.4e-11  Score=87.40  Aligned_cols=86  Identities=17%  Similarity=0.098  Sum_probs=71.1

Q ss_pred             CEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChH--Hhh
Q 036330           84 RVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLP--SLT  161 (187)
Q Consensus        84 ~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~--~l~  161 (187)
                      +++.|++++|.+++.      ..+..+++|++|++++|.+++ +|+    ..+..+++|++|++++|+++ .+|.  .+.
T Consensus        43 ~L~~L~Ls~N~l~~~------~~l~~l~~L~~L~Ls~N~l~~-~~~----~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~  110 (176)
T 1a9n_A           43 QFDAIDFSDNEIRKL------DGFPLLRRLKTLLVNNNRICR-IGE----GLDQALPDLTELILTNNSLV-ELGDLDPLA  110 (176)
T ss_dssp             CCSEEECCSSCCCEE------CCCCCCSSCCEEECCSSCCCE-ECS----CHHHHCTTCCEEECCSCCCC-CGGGGGGGG
T ss_pred             CCCEEECCCCCCCcc------cccccCCCCCEEECCCCcccc-cCc----chhhcCCCCCEEECCCCcCC-cchhhHhhh
Confidence            689999999998422      347788999999999999985 451    33488999999999999996 6787  789


Q ss_pred             cCCCCCEEEcccccccccCCC
Q 036330          162 TIISLTNLSLGYCGIEGFIPN  182 (187)
Q Consensus       162 ~l~~L~~L~Ls~N~l~G~iP~  182 (187)
                      .+++|++|++++|.++ .+|.
T Consensus       111 ~l~~L~~L~l~~N~i~-~~~~  130 (176)
T 1a9n_A          111 SLKSLTYLCILRNPVT-NKKH  130 (176)
T ss_dssp             GCTTCCEEECCSSGGG-GSTT
T ss_pred             cCCCCCEEEecCCCCC-CcHh
Confidence            9999999999999998 5664

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.13  E-value=1e-10  Score=93.79  Aligned_cols=71  Identities=24%  Similarity=0.177  Sum_probs=49.6

Q ss_pred             CcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccccCCC
Q 036330          107 FLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPN  182 (187)
Q Consensus       107 l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~  182 (187)
                      +..+++|++|++++|.+++..|     ..+..+++|++|++++|++++..+..+..+++|++|++++|++++.+|.
T Consensus       171 ~~~l~~L~~L~Ls~n~l~~~~~-----~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  241 (306)
T 2z66_A          171 FTELRNLTFLDLSQCQLEQLSP-----TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ  241 (306)
T ss_dssp             CTTCTTCCEEECTTSCCCEECT-----TTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSS
T ss_pred             HhhCcCCCEEECCCCCcCCcCH-----HHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHH
Confidence            5556666666666666665555     5677777777777777777765555677777777777777777776654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.12  E-value=2.3e-10  Score=99.81  Aligned_cols=90  Identities=23%  Similarity=0.314  Sum_probs=61.1

Q ss_pred             CEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCC-CChHHhhc
Q 036330           84 RVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNN-SLLPSLTT  162 (187)
Q Consensus        84 ~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G-~iP~~l~~  162 (187)
                      +++.|+|++|.+++    ..+..+..+++|++|++++|.+++..|     ..++.+++|++|++++|++++ .+|..+++
T Consensus        81 ~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~  151 (606)
T 3vq2_A           81 HLSNLILTGNPIQS----FSPGSFSGLTSLENLVAVETKLASLES-----FPIGQLITLKKLNVAHNFIHSCKLPAYFSN  151 (606)
T ss_dssp             TCCEEECTTCCCCC----CCTTSSTTCTTCCEEECTTSCCCCSSS-----SCCTTCTTCCEEECCSSCCCCCCCCGGGGT
T ss_pred             hcCEeECCCCcccc----cChhhcCCcccCCEEEccCCccccccc-----cccCCCCCCCEEeCCCCcccceechHhHhh
Confidence            45555555555521    112335566666666666666665444     567888888888888888875 67888888


Q ss_pred             CCCCCEEEcccccccccCCC
Q 036330          163 IISLTNLSLGYCGIEGFIPN  182 (187)
Q Consensus       163 l~~L~~L~Ls~N~l~G~iP~  182 (187)
                      +++|++|++++|++++..|.
T Consensus       152 l~~L~~L~Ls~n~l~~~~~~  171 (606)
T 3vq2_A          152 LTNLVHVDLSYNYIQTITVN  171 (606)
T ss_dssp             CTTCCEEECCSSCCCEECTT
T ss_pred             cCCCCEEEccCCcceecChh
Confidence            88888888888888865554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.12  E-value=1.9e-10  Score=97.10  Aligned_cols=101  Identities=24%  Similarity=0.315  Sum_probs=74.1

Q ss_pred             CcceeecCC--------CCCCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCC
Q 036330           72 WEQVKCVNA--------TTRRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLK  143 (187)
Q Consensus        72 w~gv~C~~~--------~~~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~  143 (187)
                      |..|.|...        ....++.|+|++|.++.    +....|..+++|++|+|++|.+++..+     ..+.++++|+
T Consensus        45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~----~~~~~~~~l~~L~~L~Ls~n~i~~i~~-----~~~~~l~~L~  115 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQI----IKVNSFKHLRHLEILQLSRNHIRTIEI-----GAFNGLANLN  115 (440)
T ss_dssp             SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCE----ECTTTTSSCSSCCEEECCSSCCCEECG-----GGGTTCSSCC
T ss_pred             CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCe----eCHHHhhCCCCCCEEECCCCcCCccCh-----hhccCCccCC
Confidence            556777541        12357889999999842    223457788888999999888886655     6788888888


Q ss_pred             EEEccCCCCCCCChHHhhcCCCCCEEEcccccccccCCC
Q 036330          144 ILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPN  182 (187)
Q Consensus       144 ~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~  182 (187)
                      +|+|++|++++..+..+..+++|++|+|++|+++ .+|.
T Consensus       116 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~  153 (440)
T 3zyj_A          116 TLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPS  153 (440)
T ss_dssp             EEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCC-EECT
T ss_pred             EEECCCCcCCeeCHhHhhccccCceeeCCCCccc-ccCH
Confidence            8888888888655556788888888888888887 3443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.12  E-value=4.7e-11  Score=99.06  Aligned_cols=70  Identities=20%  Similarity=0.238  Sum_probs=47.7

Q ss_pred             cCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHH-hhcCCCCCEEEcccccccccCC
Q 036330          106 MFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPS-LTTIISLTNLSLGYCGIEGFIP  181 (187)
Q Consensus       106 ~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~-l~~l~~L~~L~Ls~N~l~G~iP  181 (187)
                      .+..+++|++|++++|.+++..|     ..++.+++|++|++++|+++ .+|.. ++++++|++|++++|.+++..|
T Consensus        88 ~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~  158 (390)
T 3o6n_A           88 AFAYAHTIQKLYMGFNAIRYLPP-----HVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIED  158 (390)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCT-----TTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred             hccCCCCcCEEECCCCCCCcCCH-----HHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccCh
Confidence            35566777777777777765555     55677777777777777777 34443 5777777777777777775444

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.11  E-value=2.1e-10  Score=91.24  Aligned_cols=42  Identities=21%  Similarity=0.114  Sum_probs=20.6

Q ss_pred             cCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEccccccc
Q 036330          136 IGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIE  177 (187)
Q Consensus       136 ~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~  177 (187)
                      +..+++|++|++++|++++..|..+.++++|+.|++++|+++
T Consensus       173 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  214 (285)
T 1ozn_A          173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS  214 (285)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             hcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCC
Confidence            444444445555555444444444444555555555555444

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.11  E-value=1.2e-10  Score=101.63  Aligned_cols=87  Identities=22%  Similarity=0.163  Sum_probs=52.6

Q ss_pred             CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhc
Q 036330           83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT  162 (187)
Q Consensus        83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~  162 (187)
                      ..++.|+|++|.+++    +.+..+..+++|++|++++|.+.+..|     ..|.++++|++|+|++|++++..|..+++
T Consensus        33 ~~l~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~i~~~~~-----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  103 (606)
T 3t6q_A           33 NSTECLEFSFNVLPT----IQNTTFSRLINLTFLDLTRCQIYWIHE-----DTFQSQHRLDTLVLTANPLIFMAETALSG  103 (606)
T ss_dssp             TTCCEEECTTCCCSE----ECTTTSTTCTTCSEEECTTCCCCEECT-----TTTTTCTTCCEEECTTCCCSEECTTTTSS
T ss_pred             CcCcEEEccCCccCc----CChhHhccCccceEEECCCCccceeCh-----hhccCccccCeeeCCCCcccccChhhhcc
Confidence            467888888888742    222346666777777777777666555     45555555555555555555555555555


Q ss_pred             CCCCCEEEcccccccc
Q 036330          163 IISLTNLSLGYCGIEG  178 (187)
Q Consensus       163 l~~L~~L~Ls~N~l~G  178 (187)
                      +++|++|++++|++++
T Consensus       104 l~~L~~L~L~~n~i~~  119 (606)
T 3t6q_A          104 PKALKHLFFIQTGISS  119 (606)
T ss_dssp             CTTCCEEECTTSCCSC
T ss_pred             cccccEeeccccCccc
Confidence            5555555555555553

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.11  E-value=5.8e-11  Score=105.00  Aligned_cols=93  Identities=10%  Similarity=0.207  Sum_probs=60.2

Q ss_pred             CCEEEEEcCCCCCCCCC--CC------------CCCccCc--CCCCCcEEEccCCccccccCCCccccccCCCCCCCEEE
Q 036330           83 RRVKELSLDGITLGANS--GF------------LNLSMFL--PFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILN  146 (187)
Q Consensus        83 ~~v~~L~L~~~~l~~~~--~~------------~~~~~l~--~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~  146 (187)
                      .+++.|+|++|.+++..  ..            ++ ..+.  ++++|++|++++|.+.|.+|     ..++++++|++|+
T Consensus       206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip-~~l~~~~l~~L~~L~L~~n~l~~~~p-----~~l~~l~~L~~L~  279 (636)
T 4eco_A          206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT-EDLKWDNLKDLTDVEVYNCPNLTKLP-----TFLKALPEMQLIN  279 (636)
T ss_dssp             TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT-SCCCGGGCTTCCEEEEECCTTCSSCC-----TTTTTCSSCCEEE
T ss_pred             cCCCEEECcCCccccccccccccccccchhcccCc-hhhhhcccCCCCEEEecCCcCCccCh-----HHHhcCCCCCEEE
Confidence            46788888888885310  00            22 3355  77777788888777777777     6677777777777


Q ss_pred             ccCCC-CCC-CChHHhhcC------CCCCEEEcccccccccCCC
Q 036330          147 LYSNN-VNN-SLLPSLTTI------ISLTNLSLGYCGIEGFIPN  182 (187)
Q Consensus       147 Ls~N~-l~G-~iP~~l~~l------~~L~~L~Ls~N~l~G~iP~  182 (187)
                      +++|+ ++| .+|..++++      ++|++|++++|+++ .||.
T Consensus       280 Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~  322 (636)
T 4eco_A          280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPV  322 (636)
T ss_dssp             CTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCC
T ss_pred             CcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCc
Confidence            77776 776 666665554      55555555555555 5554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.11  E-value=7.9e-11  Score=105.86  Aligned_cols=88  Identities=24%  Similarity=0.228  Sum_probs=67.3

Q ss_pred             CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhc
Q 036330           83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT  162 (187)
Q Consensus        83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~  162 (187)
                      .+++.|+|++|.++    .++ ..+..+++|++|+|++|.|+ .+|     ..++.+++|++|+|++|.++ .+|..|++
T Consensus       247 ~~L~~L~Ls~N~l~----~lp-~~~~~l~~L~~L~Ls~N~l~-~lp-----~~~~~l~~L~~L~L~~N~l~-~lp~~~~~  314 (727)
T 4b8c_D          247 DFLTRLYLNGNSLT----ELP-AEIKNLSNLRVLDLSHNRLT-SLP-----AELGSCFQLKYFYFFDNMVT-TLPWEFGN  314 (727)
T ss_dssp             CSCSCCBCTTSCCS----CCC-GGGGGGTTCCEEECTTSCCS-SCC-----SSGGGGTTCSEEECCSSCCC-CCCSSTTS
T ss_pred             CCCCEEEeeCCcCc----ccC-hhhhCCCCCCEEeCcCCcCC-ccC-----hhhcCCCCCCEEECCCCCCC-ccChhhhc
Confidence            35777888888773    232 33677888888888888888 677     77888888888888888886 67877888


Q ss_pred             CCCCCEEEcccccccccCCC
Q 036330          163 IISLTNLSLGYCGIEGFIPN  182 (187)
Q Consensus       163 l~~L~~L~Ls~N~l~G~iP~  182 (187)
                      |++|++|+|++|.|+|.+|.
T Consensus       315 l~~L~~L~L~~N~l~~~~p~  334 (727)
T 4b8c_D          315 LCNLQFLGVEGNPLEKQFLK  334 (727)
T ss_dssp             CTTCCCEECTTSCCCSHHHH
T ss_pred             CCCccEEeCCCCccCCCChH
Confidence            88888888888888877664

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.10  E-value=2.2e-10  Score=90.70  Aligned_cols=88  Identities=25%  Similarity=0.336  Sum_probs=66.3

Q ss_pred             CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCC-CChHHhh
Q 036330           83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNN-SLLPSLT  161 (187)
Q Consensus        83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G-~iP~~l~  161 (187)
                      .+++.|++++|.+++    .....+..+++|++|++++|.+++..+     ..+..+++|++|++++|++++ .+|..++
T Consensus        76 ~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~-----~~~~~l~~L~~L~l~~n~l~~~~l~~~~~  146 (276)
T 2z62_A           76 SHLSTLILTGNPIQS----LALGAFSGLSSLQKLVAVETNLASLEN-----FPIGHLKTLKELNVAHNLIQSFKLPEYFS  146 (276)
T ss_dssp             TTCCEEECTTCCCCE----ECTTTTTTCTTCCEEECTTSCCCCSTT-----CCCTTCTTCCEEECCSSCCCCCCCCGGGG
T ss_pred             cCCCEEECCCCccCc----cChhhhcCCccccEEECCCCCccccCc-----hhcccCCCCCEEECcCCccceecCchhhc
Confidence            356777777777632    222446778888888888888886555     567888888888888888876 4688888


Q ss_pred             cCCCCCEEEccccccccc
Q 036330          162 TIISLTNLSLGYCGIEGF  179 (187)
Q Consensus       162 ~l~~L~~L~Ls~N~l~G~  179 (187)
                      ++++|++|++++|++++.
T Consensus       147 ~l~~L~~L~Ls~N~l~~~  164 (276)
T 2z62_A          147 NLTNLEHLDLSSNKIQSI  164 (276)
T ss_dssp             GCTTCCEEECCSSCCCEE
T ss_pred             cCCCCCEEECCCCCCCcC
Confidence            888888888888888754

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.09  E-value=1.7e-10  Score=93.52  Aligned_cols=88  Identities=24%  Similarity=0.276  Sum_probs=67.5

Q ss_pred             CEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcC
Q 036330           84 RVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTI  163 (187)
Q Consensus        84 ~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l  163 (187)
                      +++.|++++|.+++    ..+..+..+++|+.|++++|.+++..+     ..+..+++|++|++++|+++ .+|..+..+
T Consensus       193 ~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l  262 (330)
T 1xku_A          193 SLTELHLDGNKITK----VDAASLKGLNNLAKLGLSFNSISAVDN-----GSLANTPHLRELHLNNNKLV-KVPGGLADH  262 (330)
T ss_dssp             TCSEEECTTSCCCE----ECTGGGTTCTTCCEEECCSSCCCEECT-----TTGGGSTTCCEEECCSSCCS-SCCTTTTTC
T ss_pred             cCCEEECCCCcCCc----cCHHHhcCCCCCCEEECCCCcCceeCh-----hhccCCCCCCEEECCCCcCc-cCChhhccC
Confidence            45566666666521    222346778889999999998887665     67888899999999999998 788888889


Q ss_pred             CCCCEEEcccccccccCCC
Q 036330          164 ISLTNLSLGYCGIEGFIPN  182 (187)
Q Consensus       164 ~~L~~L~Ls~N~l~G~iP~  182 (187)
                      ++|++|++++|+++ .+|.
T Consensus       263 ~~L~~L~l~~N~i~-~~~~  280 (330)
T 1xku_A          263 KYIQVVYLHNNNIS-AIGS  280 (330)
T ss_dssp             SSCCEEECCSSCCC-CCCT
T ss_pred             CCcCEEECCCCcCC-ccCh
Confidence            99999999999998 4554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.09  E-value=1.9e-10  Score=86.95  Aligned_cols=88  Identities=18%  Similarity=0.277  Sum_probs=75.6

Q ss_pred             CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhc
Q 036330           83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT  162 (187)
Q Consensus        83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~  162 (187)
                      .+++.|+++++.++.    +  +.+..+++|++|++++|.+++..|     ..+..+++|++|++++|++++..|..++.
T Consensus        66 ~~L~~L~l~~n~~~~----~--~~l~~l~~L~~L~l~~n~l~~~~~-----~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~  134 (197)
T 4ezg_A           66 HNIKDLTINNIHATN----Y--NPISGLSNLERLRIMGKDVTSDKI-----PNLSGLTSLTLLDISHSAHDDSILTKINT  134 (197)
T ss_dssp             TTCSEEEEESCCCSC----C--GGGTTCTTCCEEEEECTTCBGGGS-----CCCTTCTTCCEEECCSSBCBGGGHHHHTT
T ss_pred             CCCCEEEccCCCCCc----c--hhhhcCCCCCEEEeECCccCcccC-----hhhcCCCCCCEEEecCCccCcHhHHHHhh
Confidence            468999999997731    1  247789999999999999998777     78999999999999999999889999999


Q ss_pred             CCCCCEEEcccccccccCC
Q 036330          163 IISLTNLSLGYCGIEGFIP  181 (187)
Q Consensus       163 l~~L~~L~Ls~N~l~G~iP  181 (187)
                      +++|++|++++|.+-+.+|
T Consensus       135 l~~L~~L~L~~n~~i~~~~  153 (197)
T 4ezg_A          135 LPKVNSIDLSYNGAITDIM  153 (197)
T ss_dssp             CSSCCEEECCSCTBCCCCG
T ss_pred             CCCCCEEEccCCCCccccH
Confidence            9999999999998444665

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.08  E-value=3.6e-11  Score=97.20  Aligned_cols=62  Identities=21%  Similarity=0.228  Sum_probs=32.8

Q ss_pred             CCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCC--ChHHh--hcCCCCCEEEccccccc
Q 036330          111 QELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNS--LLPSL--TTIISLTNLSLGYCGIE  177 (187)
Q Consensus       111 ~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~--iP~~l--~~l~~L~~L~Ls~N~l~  177 (187)
                      ++|++|++++|.+++..|     ..++.+++|++|++++|++.|.  +|..+  +.+++|++|++++|+++
T Consensus       149 ~~L~~L~L~~N~l~~~~~-----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~  214 (312)
T 1wwl_A          149 PGLKVLSIAQAHSLNFSC-----EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME  214 (312)
T ss_dssp             TTCCEEEEESCSCCCCCT-----TTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCC
T ss_pred             CCCcEEEeeCCCCccchH-----HHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCc
Confidence            445555555555544433     4555555555555555555543  23333  55555556666555555

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.08  E-value=1e-10  Score=100.71  Aligned_cols=91  Identities=24%  Similarity=0.302  Sum_probs=61.3

Q ss_pred             CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCC-CChHHhh
Q 036330           83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNN-SLLPSLT  161 (187)
Q Consensus        83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G-~iP~~l~  161 (187)
                      .+++.|++++|.+++    ..+..+..+++|++|++++|.+++..|     ..++.+++|++|++++|++++ .+|..++
T Consensus        50 ~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  120 (549)
T 2z81_A           50 ANLQVLILKSSRINT----IEGDAFYSLGSLEHLDLSDNHLSSLSS-----SWFGPLSSLKYLNLMGNPYQTLGVTSLFP  120 (549)
T ss_dssp             TTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECTTSCCCSCCH-----HHHTTCTTCCEEECTTCCCSSSCSSCSCT
T ss_pred             CcccEEECCCCCcCc----cChhhccccccCCEEECCCCccCccCH-----HHhccCCCCcEEECCCCcccccchhhhhh
Confidence            467888888888732    222446677777888888877776555     456777777777777777765 3555666


Q ss_pred             cCCCCCEEEcccccccccCCC
Q 036330          162 TIISLTNLSLGYCGIEGFIPN  182 (187)
Q Consensus       162 ~l~~L~~L~Ls~N~l~G~iP~  182 (187)
                      ++++|++|++++|.+.+.+|.
T Consensus       121 ~l~~L~~L~L~~n~~~~~~~~  141 (549)
T 2z81_A          121 NLTNLQTLRIGNVETFSEIRR  141 (549)
T ss_dssp             TCTTCCEEEEEESSSCCEECT
T ss_pred             ccCCccEEECCCCccccccCH
Confidence            677777777777765556654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.08  E-value=2.7e-10  Score=96.45  Aligned_cols=70  Identities=26%  Similarity=0.294  Sum_probs=56.0

Q ss_pred             CcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccccCCC
Q 036330          107 FLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPN  182 (187)
Q Consensus       107 l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~  182 (187)
                      +..+++|+.|+|++|.+++..|     ..+..+++|++|+|++|++++..|..+..+++|+.|+|++|+++ .+|.
T Consensus       214 ~~~l~~L~~L~Ls~N~l~~~~~-----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~  283 (452)
T 3zyi_A          214 LTPLVGLEELEMSGNHFPEIRP-----GSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPH  283 (452)
T ss_dssp             CTTCTTCCEEECTTSCCSEECG-----GGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-CCCT
T ss_pred             ccccccccEEECcCCcCcccCc-----ccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC-ccCh
Confidence            5566777778888887777666     77888888888888888888877888888888888888888888 4554

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.07  E-value=1.9e-10  Score=94.39  Aligned_cols=104  Identities=22%  Similarity=0.269  Sum_probs=82.4

Q ss_pred             CCCcceeecCC--------CCCCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCC
Q 036330           70 CRWEQVKCVNA--------TTRRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKW  141 (187)
Q Consensus        70 C~w~gv~C~~~--------~~~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~  141 (187)
                      |+|..|.|...        ....+++|+|++|+++    .++...|.++++|++|+|++|.+.+.+|.    ..|.++++
T Consensus         9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~----~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~----~~f~~L~~   80 (350)
T 4ay9_X            9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLR----VIQKGAFSGFGDLEKIEISQNDVLEVIEA----DVFSNLPK   80 (350)
T ss_dssp             EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCS----EECTTSSTTCTTCCEEEEECCTTCCEECT----TSBCSCTT
T ss_pred             eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCC----CcCHHHHcCCCCCCEEECcCCCCCCccCh----hHhhcchh
Confidence            67889999641        1236899999999994    34445688999999999999999888873    45788888


Q ss_pred             CCE-EEccCCCCCCCChHHhhcCCCCCEEEcccccccccCCC
Q 036330          142 LKI-LNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPN  182 (187)
Q Consensus       142 L~~-L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~  182 (187)
                      ++. ++++.|+++...|..|..+++|++|++++|++++ +|.
T Consensus        81 l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~-~~~  121 (350)
T 4ay9_X           81 LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH-LPD  121 (350)
T ss_dssp             CCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSS-CCC
T ss_pred             hhhhhcccCCcccccCchhhhhcccccccccccccccc-CCc
Confidence            775 6677799987667788999999999999999984 444

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.07  E-value=3e-10  Score=95.89  Aligned_cols=70  Identities=21%  Similarity=0.318  Sum_probs=55.1

Q ss_pred             CcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccccCCC
Q 036330          107 FLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPN  182 (187)
Q Consensus       107 l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~  182 (187)
                      +..+++|+.|+|++|.+++..|     ..+..+++|+.|+|++|++++..|..|.++++|+.|+|++|+++ .+|.
T Consensus       203 ~~~l~~L~~L~Ls~N~l~~~~~-----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~  272 (440)
T 3zyj_A          203 LTPLIKLDELDLSGNHLSAIRP-----GSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPH  272 (440)
T ss_dssp             CTTCSSCCEEECTTSCCCEECT-----TTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC-CCCT
T ss_pred             cCCCcccCEEECCCCccCccCh-----hhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC-ccCh
Confidence            5566777778888887776666     67888888888888888888777778888888888888888888 4444

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.06  E-value=9.7e-11  Score=90.94  Aligned_cols=90  Identities=14%  Similarity=0.152  Sum_probs=65.9

Q ss_pred             CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCc-cccccCCCccccccCCCCCCCEEEccC-CCCCCCChHHh
Q 036330           83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNS-FYGVYEKEGMYLSIGSLKWLKILNLYS-NNVNNSLLPSL  160 (187)
Q Consensus        83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~-l~g~ip~~~~~~~~~~l~~L~~L~Ls~-N~l~G~iP~~l  160 (187)
                      ..++.|++++++++.    ++...+..+++|++|++++|. +++..+     ..+..+++|++|++++ |++++..|..+
T Consensus        31 ~~l~~L~l~~n~l~~----i~~~~~~~l~~L~~L~l~~n~~l~~i~~-----~~f~~l~~L~~L~l~~~n~l~~i~~~~f  101 (239)
T 2xwt_C           31 PSTQTLKLIETHLRT----IPSHAFSNLPNISRIYVSIDVTLQQLES-----HSFYNLSKVTHIEIRNTRNLTYIDPDAL  101 (239)
T ss_dssp             TTCCEEEEESCCCSE----ECTTTTTTCTTCCEEEEECCSSCCEECT-----TTEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred             CcccEEEEeCCcceE----ECHHHccCCCCCcEEeCCCCCCcceeCH-----hHcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence            368889999988842    223457778888888888886 664333     4677788888888887 88876555667


Q ss_pred             hcCCCCCEEEcccccccccCCC
Q 036330          161 TTIISLTNLSLGYCGIEGFIPN  182 (187)
Q Consensus       161 ~~l~~L~~L~Ls~N~l~G~iP~  182 (187)
                      .++++|++|++++|++++ +|.
T Consensus       102 ~~l~~L~~L~l~~n~l~~-lp~  122 (239)
T 2xwt_C          102 KELPLLKFLGIFNTGLKM-FPD  122 (239)
T ss_dssp             ECCTTCCEEEEEEECCCS-CCC
T ss_pred             CCCCCCCEEeCCCCCCcc-ccc
Confidence            788888888888888775 664

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.06  E-value=1.1e-10  Score=100.16  Aligned_cols=84  Identities=26%  Similarity=0.264  Sum_probs=57.5

Q ss_pred             CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCC-CChHHhh
Q 036330           83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNN-SLLPSLT  161 (187)
Q Consensus        83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G-~iP~~l~  161 (187)
                      .+++.|+|++|.+++    ..+..+..+++|++|||++|.++ .+|     ..  .+++|++|+|++|++++ .+|..++
T Consensus        45 ~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~N~l~-~lp-----~~--~l~~L~~L~L~~N~l~~~~~p~~~~  112 (520)
T 2z7x_B           45 SKLRILIISHNRIQY----LDISVFKFNQELEYLDLSHNKLV-KIS-----CH--PTVNLKHLDLSFNAFDALPICKEFG  112 (520)
T ss_dssp             TTCCEEECCSSCCCE----EEGGGGTTCTTCCEEECCSSCCC-EEE-----CC--CCCCCSEEECCSSCCSSCCCCGGGG
T ss_pred             ccccEEecCCCccCC----cChHHhhcccCCCEEecCCCcee-ecC-----cc--ccCCccEEeccCCccccccchhhhc
Confidence            356666666666631    22234666777777777777776 466     33  67777788888887776 5677778


Q ss_pred             cCCCCCEEEcccccccc
Q 036330          162 TIISLTNLSLGYCGIEG  178 (187)
Q Consensus       162 ~l~~L~~L~Ls~N~l~G  178 (187)
                      ++++|++|++++|++++
T Consensus       113 ~l~~L~~L~L~~n~l~~  129 (520)
T 2z7x_B          113 NMSQLKFLGLSTTHLEK  129 (520)
T ss_dssp             GCTTCCEEEEEESSCCG
T ss_pred             cCCcceEEEecCcccch
Confidence            88888888888887765

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.06  E-value=2.9e-10  Score=92.37  Aligned_cols=98  Identities=20%  Similarity=0.318  Sum_probs=65.0

Q ss_pred             CCCcceeecCC--------CCCCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCC
Q 036330           70 CRWEQVKCVNA--------TTRRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKW  141 (187)
Q Consensus        70 C~w~gv~C~~~--------~~~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~  141 (187)
                      |.|+.+.|...        ...+++.|+++++.++.    +.+..+..+++|++|++++|.+++..|     ..+..+++
T Consensus        33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~~  103 (332)
T 2ft3_A           33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISE----LRKDDFKGLQHLYALVLVNNKISKIHE-----KAFSPLRK  103 (332)
T ss_dssp             EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCE----ECTTTTTTCTTCCEEECCSSCCCEECG-----GGSTTCTT
T ss_pred             ccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCc----cCHhHhhCCCCCcEEECCCCccCccCH-----hHhhCcCC
Confidence            68999998641        12368899999999842    223446777888888888888876666     56666666


Q ss_pred             CCEEEccCCCCCCCChH----------------------HhhcCCCCCEEEccccccc
Q 036330          142 LKILNLYSNNVNNSLLP----------------------SLTTIISLTNLSLGYCGIE  177 (187)
Q Consensus       142 L~~L~Ls~N~l~G~iP~----------------------~l~~l~~L~~L~Ls~N~l~  177 (187)
                      |++|++++|+++ .+|.                      .+.++++|++|++++|.++
T Consensus       104 L~~L~L~~n~l~-~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~  160 (332)
T 2ft3_A          104 LQKLYISKNHLV-EIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE  160 (332)
T ss_dssp             CCEEECCSSCCC-SCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred             CCEEECCCCcCC-ccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccc
Confidence            666666666655 3443                      3555666666666666654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.06  E-value=2.8e-10  Score=98.83  Aligned_cols=83  Identities=24%  Similarity=0.300  Sum_probs=49.0

Q ss_pred             CEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCC-CChHHhhc
Q 036330           84 RVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNN-SLLPSLTT  162 (187)
Q Consensus        84 ~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G-~iP~~l~~  162 (187)
                      +++.|+|++|.+++    +.+..+..+++|++||+++|.++ .+|     ..  .+++|++|++++|++++ .+|..+++
T Consensus        77 ~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~-~lp-----~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~  144 (562)
T 3a79_B           77 ELRVLRLSHNRIRS----LDFHVFLFNQDLEYLDVSHNRLQ-NIS-----CC--PMASLRHLDLSFNDFDVLPVCKEFGN  144 (562)
T ss_dssp             TCCEEECCSCCCCE----ECTTTTTTCTTCCEEECTTSCCC-EEC-----SC--CCTTCSEEECCSSCCSBCCCCGGGGG
T ss_pred             CccEEECCCCCCCc----CCHHHhCCCCCCCEEECCCCcCC-ccC-----cc--ccccCCEEECCCCCccccCchHhhcc
Confidence            45555555555521    11233555566666666666665 455     33  56667777777777665 45566777


Q ss_pred             CCCCCEEEcccccccc
Q 036330          163 IISLTNLSLGYCGIEG  178 (187)
Q Consensus       163 l~~L~~L~Ls~N~l~G  178 (187)
                      +++|++|++++|++++
T Consensus       145 l~~L~~L~L~~n~l~~  160 (562)
T 3a79_B          145 LTKLTFLGLSAAKFRQ  160 (562)
T ss_dssp             CTTCCEEEEECSBCCT
T ss_pred             cCcccEEecCCCcccc
Confidence            7777777777777664

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.06  E-value=1.8e-10  Score=93.56  Aligned_cols=88  Identities=24%  Similarity=0.243  Sum_probs=70.8

Q ss_pred             CEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcC
Q 036330           84 RVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTI  163 (187)
Q Consensus        84 ~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l  163 (187)
                      .++.|++++|.+++    .....+..+++|+.|++++|.+++..|     ..+..+++|++|++++|+++ .+|..+..+
T Consensus       194 ~L~~L~l~~n~i~~----~~~~~l~~l~~L~~L~L~~N~l~~~~~-----~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l  263 (332)
T 2ft3_A          194 TLNELHLDHNKIQA----IELEDLLRYSKLYRLGLGHNQIRMIEN-----GSLSFLPTLRELHLDNNKLS-RVPAGLPDL  263 (332)
T ss_dssp             SCSCCBCCSSCCCC----CCTTSSTTCTTCSCCBCCSSCCCCCCT-----TGGGGCTTCCEEECCSSCCC-BCCTTGGGC
T ss_pred             CCCEEECCCCcCCc----cCHHHhcCCCCCCEEECCCCcCCcCCh-----hHhhCCCCCCEEECCCCcCe-ecChhhhcC
Confidence            46666677766632    222447788899999999999987666     67889999999999999998 799999999


Q ss_pred             CCCCEEEcccccccccCCC
Q 036330          164 ISLTNLSLGYCGIEGFIPN  182 (187)
Q Consensus       164 ~~L~~L~Ls~N~l~G~iP~  182 (187)
                      ++|++|++++|+++ .+|.
T Consensus       264 ~~L~~L~l~~N~l~-~~~~  281 (332)
T 2ft3_A          264 KLLQVVYLHTNNIT-KVGV  281 (332)
T ss_dssp             TTCCEEECCSSCCC-BCCT
T ss_pred             ccCCEEECCCCCCC-ccCh
Confidence            99999999999998 4443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.06  E-value=3e-10  Score=100.42  Aligned_cols=71  Identities=18%  Similarity=0.153  Sum_probs=47.2

Q ss_pred             CcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccccCCC
Q 036330          107 FLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPN  182 (187)
Q Consensus       107 l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~  182 (187)
                      +..+++|++|++++|.+++ +|.    ..++++++|++|++++|++++..|..++++++|++|++++|.+++..|.
T Consensus        69 ~~~l~~L~~L~L~~n~l~~-l~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  139 (680)
T 1ziw_A           69 CQKLPMLKVLNLQHNELSQ-LSD----KTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG  139 (680)
T ss_dssp             HHHCTTCCEEECCSSCCCC-CCT----TTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCC
T ss_pred             HhcccCcCEEECCCCccCc-cCh----hhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCch
Confidence            3344555555555555552 230    3577778888888888888766666778888888888888888766554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.06  E-value=3e-10  Score=97.38  Aligned_cols=91  Identities=19%  Similarity=0.113  Sum_probs=55.3

Q ss_pred             CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCcccc--ccCCCccccccCCCCCCCEEEccCCCCCCCChHH-
Q 036330           83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYG--VYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPS-  159 (187)
Q Consensus        83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g--~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~-  159 (187)
                      ..++.|++++|.+++.   . +..+..+++|++|++++|.+++  .+|     ..+..+++|++|++++|++++.+|.. 
T Consensus       324 ~~L~~L~Ls~n~l~~~---~-~~~~~~l~~L~~L~L~~N~l~~l~~~~-----~~~~~l~~L~~L~Ls~N~l~~~l~~~~  394 (520)
T 2z7x_B          324 SPFLHLDFSNNLLTDT---V-FENCGHLTELETLILQMNQLKELSKIA-----EMTTQMKSLQQLDISQNSVSYDEKKGD  394 (520)
T ss_dssp             CCCCEEECCSSCCCTT---T-TTTCCCCSSCCEEECCSSCCCBHHHHH-----HHHTTCTTCCEEECCSSCCBCCGGGCS
T ss_pred             CcccEEEeECCccChh---h-hhhhccCCCCCEEEccCCccCccccch-----HHHhhCCCCCEEECCCCcCCcccccch
Confidence            4566777777776321   1 1235566667777777776665  444     45666666666666666666656653 


Q ss_pred             hhcCCCCCEEEcccccccccCCC
Q 036330          160 LTTIISLTNLSLGYCGIEGFIPN  182 (187)
Q Consensus       160 l~~l~~L~~L~Ls~N~l~G~iP~  182 (187)
                      +..+++|++|++++|+++|.+|.
T Consensus       395 ~~~l~~L~~L~Ls~N~l~~~~~~  417 (520)
T 2z7x_B          395 CSWTKSLLSLNMSSNILTDTIFR  417 (520)
T ss_dssp             CCCCTTCCEEECCSSCCCGGGGG
T ss_pred             hccCccCCEEECcCCCCCcchhh
Confidence            55566666666666666655553

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.05  E-value=3.6e-10  Score=83.96  Aligned_cols=86  Identities=20%  Similarity=0.180  Sum_probs=69.8

Q ss_pred             CCEEEEEcCCCCCCCCCCCCCCccCcCCC-CCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhh
Q 036330           83 RRVKELSLDGITLGANSGFLNLSMFLPFQ-ELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLT  161 (187)
Q Consensus        83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~-~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~  161 (187)
                      ..++.|++++|.++..      +.+..+. +|++|++++|.+++. +      .+..+++|++|++++|++++..|..++
T Consensus        19 ~~L~~L~l~~n~l~~i------~~~~~~~~~L~~L~Ls~N~l~~~-~------~l~~l~~L~~L~Ls~N~l~~~~~~~~~   85 (176)
T 1a9n_A           19 VRDRELDLRGYKIPVI------ENLGATLDQFDAIDFSDNEIRKL-D------GFPLLRRLKTLLVNNNRICRIGEGLDQ   85 (176)
T ss_dssp             TSCEEEECTTSCCCSC------CCGGGGTTCCSEEECCSSCCCEE-C------CCCCCSSCCEEECCSSCCCEECSCHHH
T ss_pred             CCceEEEeeCCCCchh------HHhhhcCCCCCEEECCCCCCCcc-c------ccccCCCCCEEECCCCcccccCcchhh
Confidence            4689999999999422      1244444 999999999999964 4      688999999999999999964444569


Q ss_pred             cCCCCCEEEcccccccccCCC
Q 036330          162 TIISLTNLSLGYCGIEGFIPN  182 (187)
Q Consensus       162 ~l~~L~~L~Ls~N~l~G~iP~  182 (187)
                      .+++|++|++++|+++ .+|.
T Consensus        86 ~l~~L~~L~L~~N~i~-~~~~  105 (176)
T 1a9n_A           86 ALPDLTELILTNNSLV-ELGD  105 (176)
T ss_dssp             HCTTCCEEECCSCCCC-CGGG
T ss_pred             cCCCCCEEECCCCcCC-cchh
Confidence            9999999999999996 5664

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.05  E-value=3.1e-10  Score=91.02  Aligned_cols=68  Identities=21%  Similarity=0.232  Sum_probs=54.8

Q ss_pred             CcCCCCCcEEEccCCcccc-ccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEccccccccc
Q 036330          107 FLPFQELESLDLSYNSFYG-VYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGF  179 (187)
Q Consensus       107 l~~l~~L~~L~Ls~N~l~g-~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~  179 (187)
                      +..+++|++|++++|.+++ .+|     ..+..+++|++|++++|++++..|..+..+++|++|++++|++++.
T Consensus       146 ~~~l~~L~~L~l~~n~l~~~~~~-----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  214 (306)
T 2z66_A          146 FNGLSSLEVLKMAGNSFQENFLP-----DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL  214 (306)
T ss_dssp             TTTCTTCCEEECTTCEEGGGEEC-----SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBC
T ss_pred             cccCcCCCEEECCCCccccccch-----hHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCcc
Confidence            5566777777777777776 455     6788888899999999998887788888888999999999988853

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.05  E-value=4.1e-10  Score=91.34  Aligned_cols=100  Identities=17%  Similarity=0.210  Sum_probs=67.8

Q ss_pred             CCCCcceeecCC--------CCCCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCC
Q 036330           69 CCRWEQVKCVNA--------TTRRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLK  140 (187)
Q Consensus        69 ~C~w~gv~C~~~--------~~~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~  140 (187)
                      .|.|+.+.|...        ....++.|+++++.+++    ++...+..+++|++|++++|.+++..|     ..+..++
T Consensus        30 ~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~  100 (330)
T 1xku_A           30 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITE----IKDGDFKNLKNLHTLILINNKISKISP-----GAFAPLV  100 (330)
T ss_dssp             EEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCC----BCTTTTTTCTTCCEEECCSSCCCCBCT-----TTTTTCT
T ss_pred             cCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCE----eChhhhccCCCCCEEECCCCcCCeeCH-----HHhcCCC
Confidence            467888888641        12367889999999843    222446778888888888888887666     5666666


Q ss_pred             CCCEEEccCCCCC---------------------CCChHHhhcCCCCCEEEccccccc
Q 036330          141 WLKILNLYSNNVN---------------------NSLLPSLTTIISLTNLSLGYCGIE  177 (187)
Q Consensus       141 ~L~~L~Ls~N~l~---------------------G~iP~~l~~l~~L~~L~Ls~N~l~  177 (187)
                      +|++|++++|+++                     +..+..+.++++|++|++++|.++
T Consensus       101 ~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  158 (330)
T 1xku_A          101 KLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK  158 (330)
T ss_dssp             TCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCC
T ss_pred             CCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCC
Confidence            6666666665554                     334455667777777777777775

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.05  E-value=2.3e-10  Score=104.12  Aligned_cols=91  Identities=21%  Similarity=0.205  Sum_probs=77.4

Q ss_pred             CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccc--cCCCCCCCEEEccCCCCCCCCh-HH
Q 036330           83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLS--IGSLKWLKILNLYSNNVNNSLL-PS  159 (187)
Q Consensus        83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~--~~~l~~L~~L~Ls~N~l~G~iP-~~  159 (187)
                      .+++.|+|++|.+++    ..+..+..+++|++|+|++|.+++.+|     ..  +..+++|++|+|++|++++..| ..
T Consensus        73 ~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~n~l~~~~~-----~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~  143 (844)
T 3j0a_A           73 PNLRILDLGSSKIYF----LHPDAFQGLFHLFELRLYFCGLSDAVL-----KDGYFRNLKALTRLDLSKNQIRSLYLHPS  143 (844)
T ss_dssp             TTCCEEECTTCCCCE----ECTTSSCSCSSCCCEECTTCCCSSCCS-----TTCCCSSCSSCCEEEEESCCCCCCCCCGG
T ss_pred             CCCCEEECCCCcCcc----cCHhHccCCcccCEeeCcCCCCCcccc-----cCccccccCCCCEEECCCCcccccccchh
Confidence            468888888888832    233568899999999999999998777     44  8999999999999999998655 67


Q ss_pred             hhcCCCCCEEEcccccccccCCC
Q 036330          160 LTTIISLTNLSLGYCGIEGFIPN  182 (187)
Q Consensus       160 l~~l~~L~~L~Ls~N~l~G~iP~  182 (187)
                      ++++++|++|+|++|.+++..|.
T Consensus       144 ~~~L~~L~~L~Ls~N~i~~~~~~  166 (844)
T 3j0a_A          144 FGKLNSLKSIDFSSNQIFLVCEH  166 (844)
T ss_dssp             GGTCSSCCEEEEESSCCCCCCSG
T ss_pred             HhhCCCCCEEECCCCcCCeeCHH
Confidence            99999999999999999987664

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.03  E-value=3.5e-10  Score=97.61  Aligned_cols=71  Identities=24%  Similarity=0.243  Sum_probs=46.0

Q ss_pred             CcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccccCCC
Q 036330          107 FLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPN  182 (187)
Q Consensus       107 l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~  182 (187)
                      +..+++|++|++++|.+++..|     ..+..+++|++|++++|++++..|..+.++++|+.|++++|.++|.+|.
T Consensus       466 ~~~l~~L~~L~l~~n~l~~~~~-----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          466 FTELRNLTFLDLSQCQLEQLSP-----TAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             CTTCTTCCEEECTTSCCCEECT-----TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             hhcccCCCEEECCCCccccCCh-----hhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            4455555666666665555545     5666667777777777777766556666677777777777777766664

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.02  E-value=5.6e-10  Score=102.19  Aligned_cols=88  Identities=23%  Similarity=0.261  Sum_probs=68.5

Q ss_pred             CEEEEEcCCCCCCCCCCCCCCccCc--CCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccC------CCCCCC
Q 036330           84 RVKELSLDGITLGANSGFLNLSMFL--PFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYS------NNVNNS  155 (187)
Q Consensus        84 ~v~~L~L~~~~l~~~~~~~~~~~l~--~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~------N~l~G~  155 (187)
                      +++.|+|++|.++    .++ ..+.  .+++|+.|+|++|.+++ +|     ..+..+++|+.|+|++      |++.+.
T Consensus       729 ~L~~L~Ls~N~L~----~lp-~~l~~~~l~~L~~L~Ls~N~L~~-lp-----~~l~~L~~L~~L~Ls~N~~ls~N~l~~~  797 (876)
T 4ecn_A          729 LLTTIDLRFNKLT----SLS-DDFRATTLPYLSNMDVSYNCFSS-FP-----TQPLNSSQLKAFGIRHQRDAEGNRILRQ  797 (876)
T ss_dssp             GCCEEECCSSCCC----CCC-GGGSTTTCTTCCEEECCSSCCSS-CC-----CGGGGCTTCCEEECCCCBCTTCCBCCCC
T ss_pred             CccEEECCCCCCc----cch-HHhhhccCCCcCEEEeCCCCCCc-cc-----hhhhcCCCCCEEECCCCCCccccccccc
Confidence            5666666666663    122 2233  67888888888888887 77     7888889999998866      778888


Q ss_pred             ChHHhhcCCCCCEEEcccccccccCCCC
Q 036330          156 LLPSLTTIISLTNLSLGYCGIEGFIPNQ  183 (187)
Q Consensus       156 iP~~l~~l~~L~~L~Ls~N~l~G~iP~~  183 (187)
                      +|..++++++|+.|+|++|++ |.||..
T Consensus       798 ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~  824 (876)
T 4ecn_A          798 WPTGITTCPSLIQLQIGSNDI-RKVDEK  824 (876)
T ss_dssp             CCTTGGGCSSCCEEECCSSCC-CBCCSC
T ss_pred             ChHHHhcCCCCCEEECCCCCC-CccCHh
Confidence            999999999999999999999 788875

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.02  E-value=4.3e-10  Score=90.86  Aligned_cols=92  Identities=18%  Similarity=0.161  Sum_probs=62.8

Q ss_pred             CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCcccccc--CCCCCCCEEEccCCCCCC--CChH
Q 036330           83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSI--GSLKWLKILNLYSNNVNN--SLLP  158 (187)
Q Consensus        83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~--~~l~~L~~L~Ls~N~l~G--~iP~  158 (187)
                      .+++.|++++|.+++    ..+..+..+++|++|++++|.+.|.++.   |..+  ..+++|++|++++|++++  .+|.
T Consensus       149 ~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  221 (312)
T 1wwl_A          149 PGLKVLSIAQAHSLN----FSCEQVRVFPALSTLDLSDNPELGERGL---ISALCPLKFPTLQVLALRNAGMETPSGVCS  221 (312)
T ss_dssp             TTCCEEEEESCSCCC----CCTTTCCCCSSCCEEECCSCTTCHHHHH---HHHSCTTSCTTCCEEECTTSCCCCHHHHHH
T ss_pred             CCCcEEEeeCCCCcc----chHHHhccCCCCCEEECCCCCcCcchHH---HHHHHhccCCCCCEEECCCCcCcchHHHHH
Confidence            457778888887732    2224577889999999999998876320   0334  677788888888888773  2332


Q ss_pred             -HhhcCCCCCEEEcccccccccCC
Q 036330          159 -SLTTIISLTNLSLGYCGIEGFIP  181 (187)
Q Consensus       159 -~l~~l~~L~~L~Ls~N~l~G~iP  181 (187)
                       .+..+++|++|++++|++++.+|
T Consensus       222 ~~~~~l~~L~~L~Ls~N~l~~~~~  245 (312)
T 1wwl_A          222 ALAAARVQLQGLDLSHNSLRDAAG  245 (312)
T ss_dssp             HHHHTTCCCSEEECTTSCCCSSCC
T ss_pred             HHHhcCCCCCEEECCCCcCCcccc
Confidence             23567778888888887777664

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.02  E-value=4.2e-10  Score=97.14  Aligned_cols=72  Identities=19%  Similarity=0.241  Sum_probs=60.4

Q ss_pred             cCcCCCCCcEEEccCCccc-cccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccccCCC
Q 036330          106 MFLPFQELESLDLSYNSFY-GVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPN  182 (187)
Q Consensus       106 ~l~~l~~L~~L~Ls~N~l~-g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~  182 (187)
                      .+..+++|++|++++|.++ +.+|     ..+..+++|++|++++|++++..|..++++++|++|++++|++++..|.
T Consensus       440 ~~~~l~~L~~L~l~~n~l~~~~~p-----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  512 (570)
T 2z63_A          440 IFNGLSSLEVLKMAGNSFQENFLP-----DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDG  512 (570)
T ss_dssp             TTTTCTTCCEEECTTCEEGGGEEC-----SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             hhhcCCcCcEEECcCCcCccccch-----hhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHH
Confidence            3566778888888888876 5677     7889999999999999999988899999999999999999999965543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.01  E-value=6.7e-10  Score=96.39  Aligned_cols=90  Identities=16%  Similarity=0.113  Sum_probs=46.3

Q ss_pred             CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCcccc--ccCCCccccccCCCCCCCEEEccCCCCCCCChHH-
Q 036330           83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYG--VYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPS-  159 (187)
Q Consensus        83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g--~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~-  159 (187)
                      .+++.|++++|.+++.    .+..+..+++|++|++++|.+++  .+|     ..+..+++|++|++++|++++.+|.. 
T Consensus       353 ~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~~~-----~~~~~l~~L~~L~l~~N~l~~~~~~~~  423 (562)
T 3a79_B          353 SSFTFLNFTQNVFTDS----VFQGCSTLKRLQTLILQRNGLKNFFKVA-----LMTKNMSSLETLDVSLNSLNSHAYDRT  423 (562)
T ss_dssp             CCCCEEECCSSCCCTT----TTTTCCSCSSCCEEECCSSCCCBTTHHH-----HTTTTCTTCCEEECTTSCCBSCCSSCC
T ss_pred             CCceEEECCCCccccc----hhhhhcccCCCCEEECCCCCcCCcccch-----hhhcCCCCCCEEECCCCcCCCccChhh
Confidence            4566677777666321    11234555566666666666554  233     34555555555555555555544432 


Q ss_pred             hhcCCCCCEEEcccccccccCC
Q 036330          160 LTTIISLTNLSLGYCGIEGFIP  181 (187)
Q Consensus       160 l~~l~~L~~L~Ls~N~l~G~iP  181 (187)
                      +..+++|++|++++|+++|.+|
T Consensus       424 ~~~l~~L~~L~l~~n~l~~~~~  445 (562)
T 3a79_B          424 CAWAESILVLNLSSNMLTGSVF  445 (562)
T ss_dssp             CCCCTTCCEEECCSSCCCGGGG
T ss_pred             hcCcccCCEEECCCCCCCcchh
Confidence            4444455555555555544443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.01  E-value=9e-10  Score=91.28  Aligned_cols=66  Identities=21%  Similarity=0.171  Sum_probs=34.5

Q ss_pred             CcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEccccccc
Q 036330          107 FLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIE  177 (187)
Q Consensus       107 l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~  177 (187)
                      +..+++|++|++++|.++ .+|.    ..+..+++|++|++++|++++..|..++.+++|++|++++|+++
T Consensus       113 ~~~l~~L~~L~L~~n~l~-~l~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  178 (390)
T 3o6n_A          113 FQNVPLLTVLVLERNDLS-SLPR----GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT  178 (390)
T ss_dssp             TTTCTTCCEEECCSSCCC-CCCT----TTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred             hcCCCCCCEEECCCCccC-cCCH----HHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC
Confidence            444555555555555555 3330    22355555555555555555444445555555555555555555

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.00  E-value=1e-09  Score=96.22  Aligned_cols=87  Identities=18%  Similarity=0.152  Sum_probs=73.6

Q ss_pred             CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhc
Q 036330           83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT  162 (187)
Q Consensus        83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~  162 (187)
                      .+++.|+|++|.+++    +++..+..+++|++|+|++|.+++ +|.    ..++.+++|++|+|++|.+++..|..++.
T Consensus        99 ~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~-l~~----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  169 (597)
T 3oja_B           99 HTIQKLYMGFNAIRY----LPPHVFQNVPLLTVLVLERNDLSS-LPR----GIFHNTPKLTTLSMSNNNLERIEDDTFQA  169 (597)
T ss_dssp             TTCCEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCC-CCT----TTTTTCTTCCEEECCSSCCCBCCTTTTTT
T ss_pred             CCCCEEECCCCcCCC----CCHHHHcCCCCCCEEEeeCCCCCC-CCH----HHhccCCCCCEEEeeCCcCCCCChhhhhc
Confidence            468899999999843    333557889999999999999985 451    45689999999999999999888888999


Q ss_pred             CCCCCEEEcccccccc
Q 036330          163 IISLTNLSLGYCGIEG  178 (187)
Q Consensus       163 l~~L~~L~Ls~N~l~G  178 (187)
                      +++|++|++++|.+++
T Consensus       170 l~~L~~L~L~~N~l~~  185 (597)
T 3oja_B          170 TTSLQNLQLSSNRLTH  185 (597)
T ss_dssp             CTTCCEEECTTSCCSB
T ss_pred             CCcCcEEECcCCCCCC
Confidence            9999999999999985

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.00  E-value=6.1e-10  Score=94.55  Aligned_cols=87  Identities=20%  Similarity=0.173  Sum_probs=42.5

Q ss_pred             CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhc
Q 036330           83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT  162 (187)
Q Consensus        83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~  162 (187)
                      .+++.|+|++|.+++    +.+..+..+++|++|+|++|.+++..+     ..+.++++|++|+|++|++++..|..+.+
T Consensus        56 ~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~  126 (477)
T 2id5_A           56 PHLEELELNENIVSA----VEPGAFNNLFNLRTLGLRSNRLKLIPL-----GVFTGLSNLTKLDISENKIVILLDYMFQD  126 (477)
T ss_dssp             TTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECCSSCCCSCCT-----TSSTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred             CCCCEEECCCCccCE----eChhhhhCCccCCEEECCCCcCCccCc-----ccccCCCCCCEEECCCCccccCChhHccc
Confidence            346666666666531    111234455555555555555553222     23444555555555555555444444445


Q ss_pred             CCCCCEEEcccccccc
Q 036330          163 IISLTNLSLGYCGIEG  178 (187)
Q Consensus       163 l~~L~~L~Ls~N~l~G  178 (187)
                      +++|++|++++|.+++
T Consensus       127 l~~L~~L~l~~n~l~~  142 (477)
T 2id5_A          127 LYNLKSLEVGDNDLVY  142 (477)
T ss_dssp             CTTCCEEEECCTTCCE
T ss_pred             cccCCEEECCCCccce
Confidence            5555555555554443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.00  E-value=4.1e-10  Score=96.68  Aligned_cols=106  Identities=20%  Similarity=0.077  Sum_probs=62.8

Q ss_pred             CCCcceeecCCCCCCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCc------------------
Q 036330           70 CRWEQVKCVNATTRRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEG------------------  131 (187)
Q Consensus        70 C~w~gv~C~~~~~~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~------------------  131 (187)
                      |.+.++.|..  ...++.|+|++|.+++..    +..+..+++|+.|+|++|.+++.+|...                  
T Consensus       109 N~l~~~~~~~--l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~  182 (487)
T 3oja_A          109 NNISRVSCSR--GQGKKNIYLANNKITMLR----DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (487)
T ss_dssp             SCCCCEEECC--CSSCEEEECCSSCCCSGG----GBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             CcCCCCCccc--cCCCCEEECCCCCCCCCC----chhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence            3445555543  345677777777663221    1224445555555555555555443100                  


Q ss_pred             cccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccccCCCC
Q 036330          132 MYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPNQ  183 (187)
Q Consensus       132 ~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~  183 (187)
                      ..+....+++|++|+|++|++++ +|+.+..+++|+.|+|++|.|++ ||..
T Consensus       183 ~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~  232 (487)
T 3oja_A          183 DVKGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKA  232 (487)
T ss_dssp             EEECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTT
T ss_pred             cccccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchh
Confidence            00123347788888888888886 45558888888888888888885 6654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.99  E-value=3.3e-10  Score=99.36  Aligned_cols=101  Identities=18%  Similarity=0.163  Sum_probs=54.0

Q ss_pred             CCCCCCCCCCCC-----CCcce-eecCCCCCCEEEEEcCCCCCCCCCCCCCCc---------cC----cCCCCCcEEEcc
Q 036330           59 TSWVDDEMSDCC-----RWEQV-KCVNATTRRVKELSLDGITLGANSGFLNLS---------MF----LPFQELESLDLS  119 (187)
Q Consensus        59 ~~W~~~~~~~~C-----~w~gv-~C~~~~~~~v~~L~L~~~~l~~~~~~~~~~---------~l----~~l~~L~~L~Ls  119 (187)
                      .+|...  .++|     .|.|+ .|..   .+++.|+|+++++++++..+...         .+    ..+++|++|+++
T Consensus        34 ~~W~~~--~~~~~~~~~~~~~l~~C~~---~~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~~ip~~l~~L~~L~Ls  108 (571)
T 3cvr_A           34 DKWEKQ--ALPGENRNEAVSLLKECLI---NQFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLPELPASLEYLDAC  108 (571)
T ss_dssp             HHHHTT--CCTTCCHHHHHHHHHHHHH---TTCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCSCCCCCCTTCCEEECC
T ss_pred             HHHhcc--CCccccccchhhhcccccc---CCccEEEeCCCCCCccCHhHcCCCCEEECcCCCCcccccccCCCCEEEcc
Confidence            346443  5677     68998 6764   46888888888875432211000         00    123556666666


Q ss_pred             CCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEccccccc
Q 036330          120 YNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIE  177 (187)
Q Consensus       120 ~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~  177 (187)
                      +|.|++ +|     . +..  +|++|+|++|++++ +|.   .+++|++|+|++|+|+
T Consensus       109 ~N~l~~-ip-----~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~  153 (571)
T 3cvr_A          109 DNRLST-LP-----E-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLT  153 (571)
T ss_dssp             SSCCSC-CC-----C-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS
T ss_pred             CCCCCC-cc-----h-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccC
Confidence            666654 55     3 332  55555555555554 444   3445555555555555

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.98  E-value=1.7e-09  Score=94.26  Aligned_cols=90  Identities=23%  Similarity=0.166  Sum_probs=63.9

Q ss_pred             CEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcC
Q 036330           84 RVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTI  163 (187)
Q Consensus        84 ~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l  163 (187)
                      .++.++++++.+++    ++...+..+++|++|++++|.++ .+|     ..+..+++|++|++++|++++..|..+.++
T Consensus       255 ~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~-~lp-----~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l  324 (606)
T 3t6q_A          255 SVESINLQKHYFFN----ISSNTFHCFSGLQELDLTATHLS-ELP-----SGLVGLSTLKKLVLSANKFENLCQISASNF  324 (606)
T ss_dssp             EEEEEECTTCCCSS----CCTTTTTTCTTCSEEECTTSCCS-CCC-----SSCCSCTTCCEEECTTCCCSBGGGGCGGGC
T ss_pred             ceeEEEeecCccCc----cCHHHhccccCCCEEeccCCccC-CCC-----hhhcccccCCEEECccCCcCcCchhhhhcc
Confidence            57888888887742    22244667777888888888777 666     667777777777777777776666677777


Q ss_pred             CCCCEEEcccccccccCCCC
Q 036330          164 ISLTNLSLGYCGIEGFIPNQ  183 (187)
Q Consensus       164 ~~L~~L~Ls~N~l~G~iP~~  183 (187)
                      ++|++|++++|.+.|.+|..
T Consensus       325 ~~L~~L~l~~n~~~~~~~~~  344 (606)
T 3t6q_A          325 PSLTHLSIKGNTKRLELGTG  344 (606)
T ss_dssp             TTCSEEECCSCSSCCBCCSS
T ss_pred             CcCCEEECCCCCcccccchh
Confidence            77777777777777766653

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.98  E-value=8.5e-10  Score=97.51  Aligned_cols=86  Identities=24%  Similarity=0.215  Sum_probs=41.6

Q ss_pred             CEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcC
Q 036330           84 RVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTI  163 (187)
Q Consensus        84 ~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l  163 (187)
                      +++.|+|++|.++.    ++...+..+++|++|++++|.+++..|     ..++.+++|++|++++|++++..|..++++
T Consensus        74 ~L~~L~L~~n~l~~----l~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  144 (680)
T 1ziw_A           74 MLKVLNLQHNELSQ----LSDKTFAFCTNLTELHLMSNSIQKIKN-----NPFVKQKNLITLDLSHNGLSSTKLGTQVQL  144 (680)
T ss_dssp             TCCEEECCSSCCCC----CCTTTTTTCTTCSEEECCSSCCCCCCS-----CTTTTCTTCCEEECCSSCCSCCCCCSSSCC
T ss_pred             CcCEEECCCCccCc----cChhhhccCCCCCEEECCCCccCccCh-----hHccccCCCCEEECCCCcccccCchhhccc
Confidence            34555555555521    222234455555555555555554333     344445555555555555544444444444


Q ss_pred             CCCCEEEcccccccc
Q 036330          164 ISLTNLSLGYCGIEG  178 (187)
Q Consensus       164 ~~L~~L~Ls~N~l~G  178 (187)
                      ++|++|++++|.+++
T Consensus       145 ~~L~~L~L~~n~l~~  159 (680)
T 1ziw_A          145 ENLQELLLSNNKIQA  159 (680)
T ss_dssp             TTCCEEECCSSCCCC
T ss_pred             ccCCEEEccCCcccc
Confidence            444444444444443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.97  E-value=8e-10  Score=89.08  Aligned_cols=91  Identities=20%  Similarity=0.154  Sum_probs=49.1

Q ss_pred             CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccc--cCCCccccccCCCCCCCEEEccCCCCCCCChH--
Q 036330           83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGV--YEKEGMYLSIGSLKWLKILNLYSNNVNNSLLP--  158 (187)
Q Consensus        83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~--ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~--  158 (187)
                      .+++.|+|++|.+++    .....+..+++|++|+|++|.+.+.  ++..   ..++.+++|++|+|++|+++ .+|.  
T Consensus       145 ~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~---~~~~~l~~L~~L~Ls~N~l~-~l~~~~  216 (310)
T 4glp_A          145 PGLKVLSIAQAHSPA----FSCEQVRAFPALTSLDLSDNPGLGERGLMAA---LCPHKFPAIQNLALRNTGME-TPTGVC  216 (310)
T ss_dssp             SCCCEEEEECCSSCC----CCTTSCCCCTTCCEEECCSCTTCHHHHHHTT---SCTTSSCCCCSCBCCSSCCC-CHHHHH
T ss_pred             cCCCEEEeeCCCcch----hhHHHhccCCCCCEEECCCCCCccchhhhHH---HhhhcCCCCCEEECCCCCCC-chHHHH
Confidence            467888888888832    2224467788888899988887653  2210   11234444444444444443 1222  


Q ss_pred             --HhhcCCCCCEEEcccccccccCC
Q 036330          159 --SLTTIISLTNLSLGYCGIEGFIP  181 (187)
Q Consensus       159 --~l~~l~~L~~L~Ls~N~l~G~iP  181 (187)
                        .++.+++|++|+|++|++++.+|
T Consensus       217 ~~l~~~l~~L~~L~Ls~N~l~~~~p  241 (310)
T 4glp_A          217 AALAAAGVQPHSLDLSHNSLRATVN  241 (310)
T ss_dssp             HHHHHHTCCCSSEECTTSCCCCCCC
T ss_pred             HHHHhcCCCCCEEECCCCCCCccch
Confidence              12344444444444444444433

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.93  E-value=7.1e-10  Score=86.01  Aligned_cols=90  Identities=14%  Similarity=0.194  Sum_probs=45.4

Q ss_pred             CCEEEEEcCCCC-CCCCCCCCCCccCcCCCCCcEEEccC-CccccccCCCccccccCCCCCCC-----------------
Q 036330           83 RRVKELSLDGIT-LGANSGFLNLSMFLPFQELESLDLSY-NSFYGVYEKEGMYLSIGSLKWLK-----------------  143 (187)
Q Consensus        83 ~~v~~L~L~~~~-l~~~~~~~~~~~l~~l~~L~~L~Ls~-N~l~g~ip~~~~~~~~~~l~~L~-----------------  143 (187)
                      .+++.|++++|. ++.    ++...+..+++|++|++++ |.+++..+     ..+..+++|+                 
T Consensus        55 ~~L~~L~l~~n~~l~~----i~~~~f~~l~~L~~L~l~~~n~l~~i~~-----~~f~~l~~L~~L~l~~n~l~~lp~~~~  125 (239)
T 2xwt_C           55 PNISRIYVSIDVTLQQ----LESHSFYNLSKVTHIEIRNTRNLTYIDP-----DALKELPLLKFLGIFNTGLKMFPDLTK  125 (239)
T ss_dssp             TTCCEEEEECCSSCCE----ECTTTEESCTTCCEEEEEEETTCCEECT-----TSEECCTTCCEEEEEEECCCSCCCCTT
T ss_pred             CCCcEEeCCCCCCcce----eCHhHcCCCcCCcEEECCCCCCeeEcCH-----HHhCCCCCCCEEeCCCCCCcccccccc
Confidence            356666666665 521    2222345555666666665 55553322     3344444444                 


Q ss_pred             --------EEEccCC-CCCCCChHHhhcCCCCC-EEEcccccccccCCC
Q 036330          144 --------ILNLYSN-NVNNSLLPSLTTIISLT-NLSLGYCGIEGFIPN  182 (187)
Q Consensus       144 --------~L~Ls~N-~l~G~iP~~l~~l~~L~-~L~Ls~N~l~G~iP~  182 (187)
                              +|++++| ++++..+..+.++++|+ .|++++|+++ .||.
T Consensus       126 l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~  173 (239)
T 2xwt_C          126 VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQG  173 (239)
T ss_dssp             CCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECT
T ss_pred             ccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCH
Confidence                    5555555 44433333455555555 5555555555 5554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.91  E-value=2.4e-09  Score=91.86  Aligned_cols=66  Identities=23%  Similarity=0.226  Sum_probs=56.0

Q ss_pred             CCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEccccccc-ccCC
Q 036330          109 PFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIE-GFIP  181 (187)
Q Consensus       109 ~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~-G~iP  181 (187)
                      .+++|+.|+|++|.+++ +|     +.+..+++|+.|+|++|++++ +|..++.+++|+.|++++|.+. |.+|
T Consensus       189 ~l~~L~~L~Ls~N~l~~-~~-----~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~  255 (487)
T 3oja_A          189 VFAKLKTLDLSSNKLAF-MG-----PEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLR  255 (487)
T ss_dssp             CCTTCCEEECCSSCCCE-EC-----GGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHH
T ss_pred             cCCCCCEEECCCCCCCC-CC-----HhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchH
Confidence            46777777888877775 34     568999999999999999995 8988999999999999999998 6555

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.89  E-value=3.3e-09  Score=86.24  Aligned_cols=68  Identities=22%  Similarity=0.271  Sum_probs=54.5

Q ss_pred             CcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccccCC
Q 036330          107 FLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIP  181 (187)
Q Consensus       107 l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP  181 (187)
                      +..+++|++|++++|.+++ +|      .+..+++|++|++++|++++..|..++.+++|++|++++|.+++..|
T Consensus       261 ~~~l~~L~~L~l~~n~l~~-~~------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  328 (347)
T 4fmz_A          261 VKDLTKLKMLNVGSNQISD-IS------VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP  328 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCC-CG------GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred             HhcCCCcCEEEccCCccCC-Ch------hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence            4556677777777776664 23      57788899999999999998888889999999999999999987655

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.89  E-value=2e-09  Score=88.08  Aligned_cols=83  Identities=25%  Similarity=0.318  Sum_probs=49.2

Q ss_pred             CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChH--Hh
Q 036330           83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLP--SL  160 (187)
Q Consensus        83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~--~l  160 (187)
                      .+++.|++++|.+++    ..+..+..+++|++|++++|.+++..+     ..+..+++|++|++++|+++ .+|.  .+
T Consensus        76 ~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----~~~~~l~~L~~L~L~~n~l~-~l~~~~~~  145 (353)
T 2z80_A           76 VNLQALVLTSNGINT----IEEDSFSSLGSLEHLDLSYNYLSNLSS-----SWFKPLSSLTFLNLLGNPYK-TLGETSLF  145 (353)
T ss_dssp             TTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECCSSCCSSCCH-----HHHTTCTTCSEEECTTCCCS-SSCSSCSC
T ss_pred             CCCCEEECCCCccCc----cCHhhcCCCCCCCEEECCCCcCCcCCH-----hHhCCCccCCEEECCCCCCc-ccCchhhh
Confidence            467788888887732    222335666777777777777764222     23556666666666666665 3443  45


Q ss_pred             hcCCCCCEEEccccc
Q 036330          161 TTIISLTNLSLGYCG  175 (187)
Q Consensus       161 ~~l~~L~~L~Ls~N~  175 (187)
                      .++++|++|++++|+
T Consensus       146 ~~l~~L~~L~l~~n~  160 (353)
T 2z80_A          146 SHLTKLQILRVGNMD  160 (353)
T ss_dssp             TTCTTCCEEEEEESS
T ss_pred             ccCCCCcEEECCCCc
Confidence            556666666666653

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.86  E-value=2.8e-09  Score=86.64  Aligned_cols=82  Identities=21%  Similarity=0.210  Sum_probs=65.6

Q ss_pred             CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhc
Q 036330           83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT  162 (187)
Q Consensus        83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~  162 (187)
                      .+++.+++++|.++..      +.+..+++|+.|++++|.+++..|     ..+..+++|++|++++|++++..|  +..
T Consensus       265 ~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~L~~n~l~~~~~-----~~l~~l~~L~~L~L~~n~l~~~~~--~~~  331 (347)
T 4fmz_A          265 TKLKMLNVGSNQISDI------SVLNNLSQLNSLFLNNNQLGNEDM-----EVIGGLTNLTTLFLSQNHITDIRP--LAS  331 (347)
T ss_dssp             TTCCEEECCSSCCCCC------GGGGGCTTCSEEECCSSCCCGGGH-----HHHHTCTTCSEEECCSSSCCCCGG--GGG
T ss_pred             CCcCEEEccCCccCCC------hhhcCCCCCCEEECcCCcCCCcCh-----hHhhccccCCEEEccCCccccccC--hhh
Confidence            3456666666665211      236788999999999999998887     789999999999999999998666  889


Q ss_pred             CCCCCEEEccccccc
Q 036330          163 IISLTNLSLGYCGIE  177 (187)
Q Consensus       163 l~~L~~L~Ls~N~l~  177 (187)
                      +++|++|++++|.|+
T Consensus       332 l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          332 LSKMDSADFANQVIK  346 (347)
T ss_dssp             CTTCSEESSSCC---
T ss_pred             hhccceeehhhhccc
Confidence            999999999999986

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.85  E-value=1.5e-09  Score=87.81  Aligned_cols=88  Identities=26%  Similarity=0.285  Sum_probs=46.0

Q ss_pred             CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhc
Q 036330           83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT  162 (187)
Q Consensus        83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~  162 (187)
                      .+++.|++++|.+++...   ......+++|++|++++|.+++. |      ....+++|++|+|++|++++ +|+.+..
T Consensus       144 ~~L~~L~Ls~N~l~~~~~---~~~~~~l~~L~~L~L~~N~l~~~-~------~~~~l~~L~~L~Ls~N~l~~-l~~~~~~  212 (317)
T 3o53_A          144 SRVQYLDLKLNEIDTVNF---AELAASSDTLEHLNLQYNFIYDV-K------GQVVFAKLKTLDLSSNKLAF-MGPEFQS  212 (317)
T ss_dssp             SSEEEEECTTSCCCEEEG---GGGGGGTTTCCEEECTTSCCCEE-E------CCCCCTTCCEEECCSSCCCE-ECGGGGG
T ss_pred             CCCCEEECCCCCCCcccH---HHHhhccCcCCEEECCCCcCccc-c------cccccccCCEEECCCCcCCc-chhhhcc
Confidence            467888888887732111   11123456666666666666533 3      12235555555555555553 3334555


Q ss_pred             CCCCCEEEcccccccccCCC
Q 036330          163 IISLTNLSLGYCGIEGFIPN  182 (187)
Q Consensus       163 l~~L~~L~Ls~N~l~G~iP~  182 (187)
                      +++|+.|++++|+++ .+|.
T Consensus       213 l~~L~~L~L~~N~l~-~l~~  231 (317)
T 3o53_A          213 AAGVTWISLRNNKLV-LIEK  231 (317)
T ss_dssp             GTTCSEEECTTSCCC-EECT
T ss_pred             cCcccEEECcCCccc-chhh
Confidence            555555555555555 3443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.84  E-value=7.2e-09  Score=83.05  Aligned_cols=40  Identities=28%  Similarity=0.348  Sum_probs=20.4

Q ss_pred             cCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEccccccc
Q 036330          136 IGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIE  177 (187)
Q Consensus       136 ~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~  177 (187)
                      +..+++|++|++++|++++..|  +..+++|+.|++++|.++
T Consensus       152 l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~  191 (291)
T 1h6t_A          152 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS  191 (291)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             hccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence            4445555555555555554322  455555555555555554

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.84  E-value=2.4e-09  Score=86.24  Aligned_cols=90  Identities=21%  Similarity=0.123  Sum_probs=62.4

Q ss_pred             CEEEEEcCCCCCCCCCCCCCCccC--cCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhh
Q 036330           84 RVKELSLDGITLGANSGFLNLSMF--LPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLT  161 (187)
Q Consensus        84 ~v~~L~L~~~~l~~~~~~~~~~~l--~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~  161 (187)
                      ++++|+++++.+++.   .+ ..+  ..+++|++|++++|.+++..|... ...+..+++|++|+|++|++++..|..++
T Consensus        92 ~L~~L~l~~n~l~~~---~~-~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~-~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~  166 (310)
T 4glp_A           92 RLKELTLEDLKITGT---MP-PLPLEATGLALSSLRLRNVSWATGRSWLA-ELQQWLKPGLKVLSIAQAHSPAFSCEQVR  166 (310)
T ss_dssp             CCCEEEEESCCCBSC---CC-CCSSSCCCBCCSSCEEESCCCSSTTSSHH-HHHTTBCSCCCEEEEECCSSCCCCTTSCC
T ss_pred             ceeEEEeeCCEeccc---hh-hhhhhccCCCCCEEEeecccccchhhhhH-HHHhhhccCCCEEEeeCCCcchhhHHHhc
Confidence            378888888888422   22 223  677888888888888886544100 01234677888888888888777777778


Q ss_pred             cCCCCCEEEcccccccc
Q 036330          162 TIISLTNLSLGYCGIEG  178 (187)
Q Consensus       162 ~l~~L~~L~Ls~N~l~G  178 (187)
                      .+++|++|+|++|++.|
T Consensus       167 ~l~~L~~L~Ls~N~l~~  183 (310)
T 4glp_A          167 AFPALTSLDLSDNPGLG  183 (310)
T ss_dssp             CCTTCCEEECCSCTTCH
T ss_pred             cCCCCCEEECCCCCCcc
Confidence            88888888888887765

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.82  E-value=7.3e-09  Score=83.75  Aligned_cols=81  Identities=20%  Similarity=0.146  Sum_probs=46.7

Q ss_pred             CEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcC
Q 036330           84 RVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTI  163 (187)
Q Consensus        84 ~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l  163 (187)
                      .++.|++++|.++...      ....+++|++|++++|.+++ +|     ..+..+++|++|+|++|+++ .+|..+..+
T Consensus       170 ~L~~L~L~~N~l~~~~------~~~~l~~L~~L~Ls~N~l~~-l~-----~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l  236 (317)
T 3o53_A          170 TLEHLNLQYNFIYDVK------GQVVFAKLKTLDLSSNKLAF-MG-----PEFQSAAGVTWISLRNNKLV-LIEKALRFS  236 (317)
T ss_dssp             TCCEEECTTSCCCEEE------CCCCCTTCCEEECCSSCCCE-EC-----GGGGGGTTCSEEECTTSCCC-EECTTCCCC
T ss_pred             cCCEEECCCCcCcccc------cccccccCCEEECCCCcCCc-ch-----hhhcccCcccEEECcCCccc-chhhHhhcC
Confidence            4566666666653211      12235566666666666663 33     34566666666666666666 356666666


Q ss_pred             CCCCEEEccccccc
Q 036330          164 ISLTNLSLGYCGIE  177 (187)
Q Consensus       164 ~~L~~L~Ls~N~l~  177 (187)
                      ++|+.|++++|.++
T Consensus       237 ~~L~~L~l~~N~~~  250 (317)
T 3o53_A          237 QNLEHFDLRGNGFH  250 (317)
T ss_dssp             TTCCEEECTTCCCB
T ss_pred             CCCCEEEccCCCcc
Confidence            66666666666665

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.80  E-value=1.2e-08  Score=81.71  Aligned_cols=64  Identities=25%  Similarity=0.281  Sum_probs=39.7

Q ss_pred             CcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEccccccccc
Q 036330          107 FLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGF  179 (187)
Q Consensus       107 l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~  179 (187)
                      +..+++|++|++++|.+++ +      +.+..+++|++|++++|++++.  +.++.+++|+.|++++|++++.
T Consensus       108 l~~l~~L~~L~L~~n~i~~-~------~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~  171 (291)
T 1h6t_A          108 LKDLKKLKSLSLEHNGISD-I------NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI  171 (291)
T ss_dssp             GTTCTTCCEEECTTSCCCC-C------GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC
T ss_pred             hccCCCCCEEECCCCcCCC-C------hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccc
Confidence            4445555555555555553 2      2456667777777777777653  4566777777777777777653

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.80  E-value=2e-08  Score=79.39  Aligned_cols=42  Identities=29%  Similarity=0.315  Sum_probs=25.5

Q ss_pred             ccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccc
Q 036330          135 SIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEG  178 (187)
Q Consensus       135 ~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G  178 (187)
                      .+..+++|++|++++|++++ +| .++.+++|+.|++++|++++
T Consensus       123 ~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~  164 (263)
T 1xeu_A          123 SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITN  164 (263)
T ss_dssp             GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCB
T ss_pred             hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcc
Confidence            35566666666666666664 33 45666666666666666654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.79  E-value=7.2e-09  Score=81.93  Aligned_cols=64  Identities=22%  Similarity=0.283  Sum_probs=55.9

Q ss_pred             CcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEccccccccc
Q 036330          107 FLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGF  179 (187)
Q Consensus       107 l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~  179 (187)
                      +..+++|+.|++++|.+++ +|      .+..+++|++|++++|++++.  ..+..+++|+.|++++|.+++.
T Consensus       124 l~~l~~L~~L~Ls~N~i~~-~~------~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          124 LIHLKNLEILSIRNNKLKS-IV------MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             GTTCTTCCEEECTTSCCCB-CG------GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             hcCcccccEEECCCCcCCC-Ch------HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            6678889999999998885 34      588899999999999999975  6789999999999999999854

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.79  E-value=4e-09  Score=89.76  Aligned_cols=66  Identities=21%  Similarity=0.164  Sum_probs=34.8

Q ss_pred             CCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCC--CChHHhhcC-------------CCCCEEEcccc
Q 036330          110 FQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNN--SLLPSLTTI-------------ISLTNLSLGYC  174 (187)
Q Consensus       110 l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G--~iP~~l~~l-------------~~L~~L~Ls~N  174 (187)
                      +++|++|++++|.++ .+|     .   .+++|++|++++|++++  .+|.+++++             ++|++|++++|
T Consensus       336 ~~~L~~L~L~~N~l~-~lp-----~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N  406 (454)
T 1jl5_A          336 PPRLERLIASFNHLA-EVP-----E---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETN  406 (454)
T ss_dssp             CTTCCEEECCSSCCS-CCC-----C---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC--------------------
T ss_pred             CCcCCEEECCCCccc-ccc-----c---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCC
Confidence            356777777777776 455     4   47889999999999998  788888877             78999999999


Q ss_pred             cccc--cCCCCC
Q 036330          175 GIEG--FIPNQG  184 (187)
Q Consensus       175 ~l~G--~iP~~~  184 (187)
                      +++|  .||.+.
T Consensus       407 ~l~~~~~iP~sl  418 (454)
T 1jl5_A          407 PLREFPDIPESV  418 (454)
T ss_dssp             ------------
T ss_pred             cCCccccchhhH
Confidence            9997  888753

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.79  E-value=1.5e-08  Score=81.83  Aligned_cols=41  Identities=22%  Similarity=0.366  Sum_probs=21.1

Q ss_pred             cCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccc
Q 036330          136 IGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEG  178 (187)
Q Consensus       136 ~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G  178 (187)
                      +..+++|++|++++|++++ +|. +..+++|++|++++|++++
T Consensus       169 l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~L~~N~l~~  209 (308)
T 1h6u_A          169 LANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISD  209 (308)
T ss_dssp             GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCCB
T ss_pred             hcCCCCCCEEECCCCccCc-Chh-hcCCCCCCEEEccCCccCc
Confidence            4455555555555555553 222 4555555555555555553

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.79  E-value=1.4e-08  Score=89.59  Aligned_cols=40  Identities=28%  Similarity=0.348  Sum_probs=18.5

Q ss_pred             cCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEccccccc
Q 036330          136 IGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIE  177 (187)
Q Consensus       136 ~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~  177 (187)
                      +..+++|+.|+|++|++++..|  +..+++|+.|+|++|+|+
T Consensus       149 l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~  188 (605)
T 1m9s_A          149 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS  188 (605)
T ss_dssp             GGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             hcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence            4444444444444444444333  444444444444444444

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.78  E-value=1.5e-08  Score=86.30  Aligned_cols=80  Identities=18%  Similarity=0.137  Sum_probs=59.7

Q ss_pred             CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhc
Q 036330           83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT  162 (187)
Q Consensus        83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~  162 (187)
                      .+++.|+++++.+++.      + +..+++|++|++++|.+++ +|       ++.+++|++|++++|++++ +|  ++.
T Consensus        64 ~~L~~L~Ls~n~l~~~------~-~~~l~~L~~L~Ls~N~l~~-~~-------~~~l~~L~~L~L~~N~l~~-l~--~~~  125 (457)
T 3bz5_A           64 TGLTKLICTSNNITTL------D-LSQNTNLTYLACDSNKLTN-LD-------VTPLTKLTYLNCDTNKLTK-LD--VSQ  125 (457)
T ss_dssp             TTCSEEECCSSCCSCC------C-CTTCTTCSEEECCSSCCSC-CC-------CTTCTTCCEEECCSSCCSC-CC--CTT
T ss_pred             CCCCEEEccCCcCCeE------c-cccCCCCCEEECcCCCCce-ee-------cCCCCcCCEEECCCCcCCe-ec--CCC
Confidence            4577777777777321      1 5667788888888888775 23       6778888888888888886 55  788


Q ss_pred             CCCCCEEEcccccccccCC
Q 036330          163 IISLTNLSLGYCGIEGFIP  181 (187)
Q Consensus       163 l~~L~~L~Ls~N~l~G~iP  181 (187)
                      +++|++|++++|++++ +|
T Consensus       126 l~~L~~L~l~~N~l~~-l~  143 (457)
T 3bz5_A          126 NPLLTYLNCARNTLTE-ID  143 (457)
T ss_dssp             CTTCCEEECTTSCCSC-CC
T ss_pred             CCcCCEEECCCCccce-ec
Confidence            8888888888888886 44

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.77  E-value=1.7e-08  Score=88.93  Aligned_cols=83  Identities=25%  Similarity=0.285  Sum_probs=58.2

Q ss_pred             CEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcC
Q 036330           84 RVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTI  163 (187)
Q Consensus        84 ~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l  163 (187)
                      +++.|+|++|.+++.      +.+..+++|+.|+|++|.+.+ ++      .+..+++|+.|+|++|++++.  ..+..+
T Consensus        88 ~L~~L~Ls~N~l~~l------~~l~~l~~L~~L~Ls~N~l~~-l~------~l~~l~~L~~L~Ls~N~l~~l--~~l~~l  152 (605)
T 1m9s_A           88 NLGWLFLDENKIKDL------SSLKDLKKLKSLSLEHNGISD-IN------GLVHLPQLESLYLGNNKITDI--TVLSRL  152 (605)
T ss_dssp             TCCEEECCSSCCCCC------TTSTTCTTCCEEECTTSCCCC-CG------GGGGCTTCSEEECCSSCCCCC--GGGGSC
T ss_pred             CCCEEECcCCCCCCC------hhhccCCCCCEEEecCCCCCC-Cc------cccCCCccCEEECCCCccCCc--hhhccc
Confidence            455555555555211      235566777777777777764 33      577888888888888888864  568888


Q ss_pred             CCCCEEEcccccccccCC
Q 036330          164 ISLTNLSLGYCGIEGFIP  181 (187)
Q Consensus       164 ~~L~~L~Ls~N~l~G~iP  181 (187)
                      ++|+.|+|++|++++..|
T Consensus       153 ~~L~~L~Ls~N~l~~~~~  170 (605)
T 1m9s_A          153 TKLDTLSLEDNQISDIVP  170 (605)
T ss_dssp             TTCSEEECCSSCCCCCGG
T ss_pred             CCCCEEECcCCcCCCchh
Confidence            889999999988887655

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.77  E-value=1.7e-08  Score=81.47  Aligned_cols=80  Identities=28%  Similarity=0.418  Sum_probs=41.3

Q ss_pred             CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhc
Q 036330           83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT  162 (187)
Q Consensus        83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~  162 (187)
                      .+++.|++++|.+++.      +.+..+++|+.|++++|.+++ +|      .+..+++|++|++++|++++. |. ++.
T Consensus        85 ~~L~~L~L~~n~l~~~------~~~~~l~~L~~L~l~~n~l~~-~~------~l~~l~~L~~L~l~~n~l~~~-~~-l~~  149 (308)
T 1h6u_A           85 TKITELELSGNPLKNV------SAIAGLQSIKTLDLTSTQITD-VT------PLAGLSNLQVLYLDLNQITNI-SP-LAG  149 (308)
T ss_dssp             CSCCEEECCSCCCSCC------GGGTTCTTCCEEECTTSCCCC-CG------GGTTCTTCCEEECCSSCCCCC-GG-GGG
T ss_pred             CCCCEEEccCCcCCCc------hhhcCCCCCCEEECCCCCCCC-ch------hhcCCCCCCEEECCCCccCcC-cc-ccC
Confidence            4678888888877422      125556666666666666654 23      244444444444444444432 21 444


Q ss_pred             CCCCCEEEccccccc
Q 036330          163 IISLTNLSLGYCGIE  177 (187)
Q Consensus       163 l~~L~~L~Ls~N~l~  177 (187)
                      +++|++|++++|+++
T Consensus       150 l~~L~~L~l~~n~l~  164 (308)
T 1h6u_A          150 LTNLQYLSIGNAQVS  164 (308)
T ss_dssp             CTTCCEEECCSSCCC
T ss_pred             CCCccEEEccCCcCC
Confidence            444444444444444

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.75  E-value=1.3e-08  Score=89.97  Aligned_cols=63  Identities=24%  Similarity=0.157  Sum_probs=51.5

Q ss_pred             CCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccccCCC
Q 036330          110 FQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPN  182 (187)
Q Consensus       110 l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~  182 (187)
                      +++|+.|++++|.|+ .+|     .   .+++|++|+|++|+++ .+|..+.++++|+.|+|++|.++|.+|.
T Consensus       240 l~~L~~L~Ls~N~L~-~lp-----~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~  302 (622)
T 3g06_A          240 PSELKELMVSGNRLT-SLP-----M---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  302 (622)
T ss_dssp             CTTCCEEECCSSCCS-CCC-----C---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred             CCcCcEEECCCCCCC-cCC-----c---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence            456666666666666 455     3   5688999999999999 8899999999999999999999987664

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.75  E-value=1.7e-08  Score=85.63  Aligned_cols=42  Identities=19%  Similarity=0.231  Sum_probs=23.5

Q ss_pred             ccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccc
Q 036330          135 SIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEG  178 (187)
Q Consensus       135 ~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G  178 (187)
                      .+..+++|++|++++|++++..|  +..+++|+.|++++|.+++
T Consensus       348 ~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          348 SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             hhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            34455555555555555555444  5555556666666665554

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.73  E-value=7.2e-09  Score=83.77  Aligned_cols=85  Identities=15%  Similarity=0.153  Sum_probs=49.7

Q ss_pred             CEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccc-cCCCccccccCCCCCCCEEEccCCCCCCCChHHhhc
Q 036330           84 RVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGV-YEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT  162 (187)
Q Consensus        84 ~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~-ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~  162 (187)
                      +++.++++++.+.+..     ..+..+++|++|++++|.+++. +|     ..+..+++|++|++++|++++..|..++.
T Consensus        71 ~l~~L~l~~n~l~~~~-----~~~~~~~~L~~L~L~~~~l~~~~~~-----~~~~~~~~L~~L~L~~~~l~~~~~~~l~~  140 (336)
T 2ast_B           71 GVIAFRCPRSFMDQPL-----AEHFSPFRVQHMDLSNSVIEVSTLH-----GILSQCSKLQNLSLEGLRLSDPIVNTLAK  140 (336)
T ss_dssp             TCSEEECTTCEECSCC-----CSCCCCBCCCEEECTTCEECHHHHH-----HHHTTBCCCSEEECTTCBCCHHHHHHHTT
T ss_pred             cceEEEcCCccccccc-----hhhccCCCCCEEEccCCCcCHHHHH-----HHHhhCCCCCEEeCcCcccCHHHHHHHhc
Confidence            4555555555552111     1133566777777777766654 55     45566666666666666666666666666


Q ss_pred             CCCCCEEEcccc-cccc
Q 036330          163 IISLTNLSLGYC-GIEG  178 (187)
Q Consensus       163 l~~L~~L~Ls~N-~l~G  178 (187)
                      +++|++|++++| .+++
T Consensus       141 ~~~L~~L~L~~~~~l~~  157 (336)
T 2ast_B          141 NSNLVRLNLSGCSGFSE  157 (336)
T ss_dssp             CTTCSEEECTTCBSCCH
T ss_pred             CCCCCEEECCCCCCCCH
Confidence            666666666666 4553

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.73  E-value=1.1e-08  Score=89.66  Aligned_cols=62  Identities=15%  Similarity=0.139  Sum_probs=43.0

Q ss_pred             CCCcEEEccCCccccccCCCccccccCCCCCC-------CEEEccCCCCCCCChHHhhcCCCCCEEEcccccccccCCC
Q 036330          111 QELESLDLSYNSFYGVYEKEGMYLSIGSLKWL-------KILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPN  182 (187)
Q Consensus       111 ~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L-------~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~  182 (187)
                      ++|+.|+|++|.|+ .+|     . +..  +|       +.|+|++|+++ .+|..+..+++|+.|+|++|.|+|.+|.
T Consensus       180 ~~L~~L~Ls~N~L~-~lp-----~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~  248 (571)
T 3cvr_A          180 ESLEALDVSTNLLE-SLP-----A-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRE  248 (571)
T ss_dssp             TTCCEEECCSSCCS-SCC-----C-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred             CCCCEEECcCCCCC-chh-----h-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence            34555555555555 444     3 333  56       88888888888 5888888888999999999999887764

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.72  E-value=1.2e-08  Score=81.41  Aligned_cols=67  Identities=30%  Similarity=0.299  Sum_probs=56.6

Q ss_pred             CCCCCcEEEccCCcccc--ccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCC--CCCEEEcccccccccCCC
Q 036330          109 PFQELESLDLSYNSFYG--VYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTII--SLTNLSLGYCGIEGFIPN  182 (187)
Q Consensus       109 ~l~~L~~L~Ls~N~l~g--~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~--~L~~L~Ls~N~l~G~iP~  182 (187)
                      ++++|+.|+|++|.|++  .+|     ..+..+++|+.|+|++|++++.  ..+..+.  +|+.|+|++|.+++.+|.
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~-----~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~  238 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMS-----SIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRD  238 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGT-----THHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSS
T ss_pred             hCCCCCEEECCCCCCCCCccch-----hHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCc
Confidence            47899999999999998  566     5677899999999999999974  4455555  999999999999998874

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.70  E-value=3.7e-08  Score=83.81  Aligned_cols=78  Identities=17%  Similarity=0.110  Sum_probs=47.0

Q ss_pred             CEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcC
Q 036330           84 RVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTI  163 (187)
Q Consensus        84 ~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l  163 (187)
                      +++.|++++|.+++    ++  .+..+++|++|++++|.+++ +|     ..+   ++|++|++++|++++ +| .++++
T Consensus       132 ~L~~L~L~~n~l~~----lp--~~~~l~~L~~L~l~~N~l~~-lp-----~~~---~~L~~L~L~~n~l~~-l~-~~~~l  194 (454)
T 1jl5_A          132 LLEYLGVSNNQLEK----LP--ELQNSSFLKIIDVDNNSLKK-LP-----DLP---PSLEFIAAGNNQLEE-LP-ELQNL  194 (454)
T ss_dssp             TCCEEECCSSCCSS----CC--CCTTCTTCCEEECCSSCCSC-CC-----CCC---TTCCEEECCSSCCSS-CC-CCTTC
T ss_pred             CCCEEECcCCCCCC----Cc--ccCCCCCCCEEECCCCcCcc-cC-----CCc---ccccEEECcCCcCCc-Cc-cccCC
Confidence            34455555554421    21  26667777777777777775 55     222   366666666666665 55 46666


Q ss_pred             CCCCEEEcccccccc
Q 036330          164 ISLTNLSLGYCGIEG  178 (187)
Q Consensus       164 ~~L~~L~Ls~N~l~G  178 (187)
                      ++|++|++++|++++
T Consensus       195 ~~L~~L~l~~N~l~~  209 (454)
T 1jl5_A          195 PFLTAIYADNNSLKK  209 (454)
T ss_dssp             TTCCEEECCSSCCSS
T ss_pred             CCCCEEECCCCcCCc
Confidence            777777777776664

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.70  E-value=3.6e-10  Score=85.49  Aligned_cols=92  Identities=20%  Similarity=0.191  Sum_probs=54.1

Q ss_pred             CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCc-----------------cccccCCCCCCCEE
Q 036330           83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEG-----------------MYLSIGSLKWLKIL  145 (187)
Q Consensus        83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~-----------------~~~~~~~l~~L~~L  145 (187)
                      .+++.|++++|.+++    ++  .+..+++|++|++++|.++ .+|...                 ..+.+..+++|++|
T Consensus        48 ~~L~~L~ls~n~l~~----l~--~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L  120 (198)
T 1ds9_A           48 KACKHLALSTNNIEK----IS--SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVL  120 (198)
T ss_dssp             TTCSEEECSEEEESC----CC--CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHHSSEE
T ss_pred             CCCCEEECCCCCCcc----cc--ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcCCccccCCCCCEE
Confidence            357778888777732    22  3556666777777777666 455100                 00134455566666


Q ss_pred             EccCCCCCCCCh--HHhhcCCCCCEEEcccccccccCCC
Q 036330          146 NLYSNNVNNSLL--PSLTTIISLTNLSLGYCGIEGFIPN  182 (187)
Q Consensus       146 ~Ls~N~l~G~iP--~~l~~l~~L~~L~Ls~N~l~G~iP~  182 (187)
                      ++++|++++ +|  ..+..+++|++|++++|.+++.+|.
T Consensus       121 ~l~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  158 (198)
T 1ds9_A          121 YMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             EESEEECCC-HHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred             ECCCCcCCc-hhHHHHHhcCCCCCEEEecCCcccccccc
Confidence            666666663 33  3566677777777777777666553

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.69  E-value=1.3e-09  Score=88.19  Aligned_cols=97  Identities=20%  Similarity=0.145  Sum_probs=81.1

Q ss_pred             CCCCcceeecCCCCCCEEEEEcCCCCCCCCCCCCCCccCcCC--CCCcEEEccCCccccccCCCccccccCCCCCCCEEE
Q 036330           69 CCRWEQVKCVNATTRRVKELSLDGITLGANSGFLNLSMFLPF--QELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILN  146 (187)
Q Consensus        69 ~C~w~gv~C~~~~~~~v~~L~L~~~~l~~~~~~~~~~~l~~l--~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~  146 (187)
                      |..|.++.|+.   ..++.++++++.+.   +    ..+..+  +.++.|++++|.+.+..+      .+..+++|++|+
T Consensus        36 c~~W~~~~~~~---~~~~~l~l~~~~~~---~----~~~~~~~~~~l~~L~l~~n~l~~~~~------~~~~~~~L~~L~   99 (336)
T 2ast_B           36 CKRWYRLASDE---SLWQTLDLTGKNLH---P----DVTGRLLSQGVIAFRCPRSFMDQPLA------EHFSPFRVQHMD   99 (336)
T ss_dssp             CHHHHHHHTCS---TTSSEEECTTCBCC---H----HHHHHHHHTTCSEEECTTCEECSCCC------SCCCCBCCCEEE
T ss_pred             HHHHHHHhcCc---hhheeeccccccCC---H----HHHHhhhhccceEEEcCCccccccch------hhccCCCCCEEE
Confidence            44699999875   45789999998872   1    234455  789999999999998766      467899999999


Q ss_pred             ccCCCCCCC-ChHHhhcCCCCCEEEcccccccccCC
Q 036330          147 LYSNNVNNS-LLPSLTTIISLTNLSLGYCGIEGFIP  181 (187)
Q Consensus       147 Ls~N~l~G~-iP~~l~~l~~L~~L~Ls~N~l~G~iP  181 (187)
                      +++|.+++. +|..+..+++|++|++++|.+++.+|
T Consensus       100 L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~  135 (336)
T 2ast_B          100 LSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIV  135 (336)
T ss_dssp             CTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHH
T ss_pred             ccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHH
Confidence            999999876 89999999999999999999987655

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.67  E-value=5.2e-08  Score=82.67  Aligned_cols=61  Identities=23%  Similarity=0.320  Sum_probs=26.9

Q ss_pred             CCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccc
Q 036330          109 PFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEG  178 (187)
Q Consensus       109 ~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G  178 (187)
                      .+++|+.|++++|.+++. |     . +..+++|++|++++|++++..|  ++.+++|+.|++++|++++
T Consensus       263 ~l~~L~~L~l~~n~l~~~-~-----~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~  323 (466)
T 1o6v_A          263 GLTKLTELKLGANQISNI-S-----P-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISD  323 (466)
T ss_dssp             TCTTCSEEECCSSCCCCC-G-----G-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSC
T ss_pred             cCCCCCEEECCCCccCcc-c-----c-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCC
Confidence            344444444444444431 1     1 3444444444444444443222  4444444444444444443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.66  E-value=7.2e-09  Score=85.77  Aligned_cols=40  Identities=20%  Similarity=0.116  Sum_probs=18.3

Q ss_pred             CCCCCEEEccCCCCCC----CChHHh-hcCCCCCEEEcccccccc
Q 036330          139 LKWLKILNLYSNNVNN----SLLPSL-TTIISLTNLSLGYCGIEG  178 (187)
Q Consensus       139 l~~L~~L~Ls~N~l~G----~iP~~l-~~l~~L~~L~Ls~N~l~G  178 (187)
                      +++|++|+|++|++++    .+|..+ .++++|++|++++|.+++
T Consensus       273 ~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~  317 (386)
T 2ca6_A          273 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  317 (386)
T ss_dssp             SCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             CCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence            4444444444444443    244444 334444444444444443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.64  E-value=5.4e-09  Score=86.50  Aligned_cols=40  Identities=23%  Similarity=0.209  Sum_probs=18.2

Q ss_pred             CCCCCCCEEEccCCCCCC----CChHHhhcCCCCCEEEcccccc
Q 036330          137 GSLKWLKILNLYSNNVNN----SLLPSLTTIISLTNLSLGYCGI  176 (187)
Q Consensus       137 ~~l~~L~~L~Ls~N~l~G----~iP~~l~~l~~L~~L~Ls~N~l  176 (187)
                      ..+++|++|+|++|++++    .+|..+..+++|++|+|++|.+
T Consensus        91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l  134 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL  134 (386)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred             hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCC
Confidence            344444444444444443    2444444444444444444444

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.63  E-value=1.1e-07  Score=81.02  Aligned_cols=59  Identities=17%  Similarity=0.179  Sum_probs=37.4

Q ss_pred             CCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccc
Q 036330          109 PFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEG  178 (187)
Q Consensus       109 ~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G  178 (187)
                      .+++|+.|++++|.+++.        .++.+++|++|++++|++++ +|  ++.+++|++|++++|+++|
T Consensus       189 ~l~~L~~L~l~~N~l~~~--------~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~  247 (457)
T 3bz5_A          189 QNKLLNRLNCDTNNITKL--------DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE  247 (457)
T ss_dssp             TCTTCCEEECCSSCCSCC--------CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC
T ss_pred             cCCCCCEEECcCCcCCee--------ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC
Confidence            344455555555544431        25666777777777777776 55  6677777777777777775

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.62  E-value=7.8e-10  Score=83.61  Aligned_cols=65  Identities=22%  Similarity=0.242  Sum_probs=50.7

Q ss_pred             cCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccc
Q 036330          106 MFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEG  178 (187)
Q Consensus       106 ~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G  178 (187)
                      .+..+++|++|++++|.+++ +|      .+..+++|++|++++|+++ .+|..+..+++|++|++++|++++
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l~------~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~  107 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-IS------SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS  107 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-CC------CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC
T ss_pred             HHhcCCCCCEEECCCCCCcc-cc------ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc
Confidence            47788999999999999986 65      5667777778888777777 577766667777777777777764

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.61  E-value=8.8e-09  Score=84.75  Aligned_cols=86  Identities=21%  Similarity=0.215  Sum_probs=56.2

Q ss_pred             CEEEEEcCCCCCCCCCCCCCCccCcCC-----CCCcEEEccCCccccccCCCccccc----cCCC-CCCCEEEccCCCCC
Q 036330           84 RVKELSLDGITLGANSGFLNLSMFLPF-----QELESLDLSYNSFYGVYEKEGMYLS----IGSL-KWLKILNLYSNNVN  153 (187)
Q Consensus        84 ~v~~L~L~~~~l~~~~~~~~~~~l~~l-----~~L~~L~Ls~N~l~g~ip~~~~~~~----~~~l-~~L~~L~Ls~N~l~  153 (187)
                      ++++|+|++|.+++.+.    ..+..+     ++|++|+|++|.+++..+     ..    +..+ ++|++|+|++|+++
T Consensus        52 ~L~~L~Ls~N~l~~~~~----~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~-----~~l~~~l~~~~~~L~~L~Ls~N~l~  122 (362)
T 3goz_A           52 SVTSLNLSGNSLGFKNS----DELVQILAAIPANVTSLNLSGNFLSYKSS-----DELVKTLAAIPFTITVLDLGWNDFS  122 (362)
T ss_dssp             TCCEEECCSSCGGGSCH----HHHHHHHHTSCTTCCEEECCSSCGGGSCH-----HHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred             ceeEEECcCCCCCHHHH----HHHHHHHhccCCCccEEECcCCcCChHHH-----HHHHHHHHhCCCCccEEECcCCcCC
Confidence            67778888877732111    112222     778888888888776554     33    3333 78888888888887


Q ss_pred             CCChHHhhc-----CCCCCEEEcccccccc
Q 036330          154 NSLLPSLTT-----IISLTNLSLGYCGIEG  178 (187)
Q Consensus       154 G~iP~~l~~-----l~~L~~L~Ls~N~l~G  178 (187)
                      +..+..+..     .++|++|+|++|++++
T Consensus       123 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  152 (362)
T 3goz_A          123 SKSSSEFKQAFSNLPASITSLNLRGNDLGI  152 (362)
T ss_dssp             GSCHHHHHHHHTTSCTTCCEEECTTSCGGG
T ss_pred             cHHHHHHHHHHHhCCCceeEEEccCCcCCH
Confidence            766655443     2588888888888874

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.56  E-value=2.8e-08  Score=87.91  Aligned_cols=34  Identities=15%  Similarity=0.231  Sum_probs=20.3

Q ss_pred             CCCCCCCCCCCCCCCccee--------ecCCCCCCEEEEEcCCCCCC
Q 036330           58 LTSWVDDEMSDCCRWEQVK--------CVNATTRRVKELSLDGITLG   96 (187)
Q Consensus        58 l~~W~~~~~~~~C~w~gv~--------C~~~~~~~v~~L~L~~~~l~   96 (187)
                      ...|...  .++|.|.|..        |..   ..++.|++++++++
T Consensus        12 w~~W~~~--~~~~~~~~r~~~~~~~~~c~~---~~l~~L~ls~n~L~   53 (622)
T 3g06_A           12 WSAWRRA--APAEESRGRAAVVQKMRACLN---NGNAVLNVGESGLT   53 (622)
T ss_dssp             HHHHHHT--CCGGGHHHHHHHHHHHHHHHH---HCCCEEECCSSCCS
T ss_pred             HHHHHhc--CCcchhccccccCcccccccC---CCCcEEEecCCCcC
Confidence            3456554  6788886542        322   34677777777774

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.45  E-value=1.6e-08  Score=80.67  Aligned_cols=105  Identities=16%  Similarity=0.115  Sum_probs=67.0

Q ss_pred             CCCCCcceeecCCCCCCEEEEEcCCC---C----CC----------------CCCCCCCCccCcCCCCCcE--EEccCCc
Q 036330           68 DCCRWEQVKCVNATTRRVKELSLDGI---T----LG----------------ANSGFLNLSMFLPFQELES--LDLSYNS  122 (187)
Q Consensus        68 ~~C~w~gv~C~~~~~~~v~~L~L~~~---~----l~----------------~~~~~~~~~~l~~l~~L~~--L~Ls~N~  122 (187)
                      ..|+|.|+.|+. ...+|+.+...+.   .    +.                .....++.+.+...+.|..  ++++.|.
T Consensus        76 ~l~~~~g~i~~~-~~~ki~~~v~~~~~~~~~~~~l~~~~~~~Lk~~l~~ryn~~~~~LdLs~l~~dp~L~~~~l~l~~N~  154 (267)
T 3rw6_A           76 ALKAVNYKILDR-ENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNR  154 (267)
T ss_dssp             HHHHTTSSCBCT-TSCBCCCEEEECCCCHHHHTSCCHHHHHHHHHHHHHTEETTTTEEECTTGGGCHHHHHTTCCCCTTS
T ss_pred             HHHhcCcEEECC-CCCEEEEEEecCCCcccccccCCHHHHHHHHHHHHhccchhccccCHHHcCCCcchhhcCccccCCH
Confidence            367899999986 3345655444331   1    10                0000122222333444444  6667773


Q ss_pred             ---cccccCCCccccccCCCCCCCEEEccCCCCCC--CChHHhhcCCCCCEEEcccccccc
Q 036330          123 ---FYGVYEKEGMYLSIGSLKWLKILNLYSNNVNN--SLLPSLTTIISLTNLSLGYCGIEG  178 (187)
Q Consensus       123 ---l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G--~iP~~l~~l~~L~~L~Ls~N~l~G  178 (187)
                         +.+.++     ....++++|+.|+|++|++++  .+|..+..+++|+.|+|++|+|++
T Consensus       155 ~~~~~~~l~-----i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~  210 (267)
T 3rw6_A          155 RSCMAATLR-----IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS  210 (267)
T ss_dssp             HHHHHHHHH-----HHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS
T ss_pred             HHHHHHHHH-----HHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC
Confidence               333222     222468899999999999998  677888999999999999999996

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.44  E-value=1.6e-08  Score=84.98  Aligned_cols=67  Identities=22%  Similarity=0.137  Sum_probs=53.1

Q ss_pred             cCCCCCcEEEccCCccccccCCCccccccCC-----CCCCCEEEccCCCCCC----CChHHhhcCCCCCEEEcccccccc
Q 036330          108 LPFQELESLDLSYNSFYGVYEKEGMYLSIGS-----LKWLKILNLYSNNVNN----SLLPSLTTIISLTNLSLGYCGIEG  178 (187)
Q Consensus       108 ~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~-----l~~L~~L~Ls~N~l~G----~iP~~l~~l~~L~~L~Ls~N~l~G  178 (187)
                      ..+++|++|++++|.+++..+     ..+..     .++|++|++++|++++    .+|..+..+++|++|++++|++++
T Consensus       338 ~~~~~L~~L~Ls~n~i~~~~~-----~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          338 AQNRFLLELQISNNRLEDAGV-----RELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  412 (461)
T ss_dssp             HHCSSCCEEECCSSBCHHHHH-----HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             hhCCCccEEEccCCccccccH-----HHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence            345788888888888876544     33322     6789999999999986    788899999999999999999885


Q ss_pred             c
Q 036330          179 F  179 (187)
Q Consensus       179 ~  179 (187)
                      .
T Consensus       413 ~  413 (461)
T 1z7x_W          413 A  413 (461)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.41  E-value=5.1e-08  Score=80.15  Aligned_cols=94  Identities=20%  Similarity=0.190  Sum_probs=65.0

Q ss_pred             CCEEEEEcCCCCCCCCCCCCCCccCcCC-CCCcEEEccCCccccccCCCccccc----cCC-CCCCCEEEccCCCCCCCC
Q 036330           83 RRVKELSLDGITLGANSGFLNLSMFLPF-QELESLDLSYNSFYGVYEKEGMYLS----IGS-LKWLKILNLYSNNVNNSL  156 (187)
Q Consensus        83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l-~~L~~L~Ls~N~l~g~ip~~~~~~~----~~~-l~~L~~L~Ls~N~l~G~i  156 (187)
                      ..++.|+|++|.+++.+...-...+..+ ++|++|++++|.+++..+     ..    +.. .++|++|+|++|++++.-
T Consensus        80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~-----~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  154 (362)
T 3goz_A           80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSS-----SEFKQAFSNLPASITSLNLRGNDLGIKS  154 (362)
T ss_dssp             TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH-----HHHHHHHTTSCTTCCEEECTTSCGGGSC
T ss_pred             CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHH-----HHHHHHHHhCCCceeEEEccCCcCCHHH
Confidence            5689999999998422210000113344 789999999999976544     33    333 368999999999998644


Q ss_pred             ----hHHhhcCC-CCCEEEcccccccccCC
Q 036330          157 ----LPSLTTII-SLTNLSLGYCGIEGFIP  181 (187)
Q Consensus       157 ----P~~l~~l~-~L~~L~Ls~N~l~G~iP  181 (187)
                          +..+..++ +|++|+|++|++++..|
T Consensus       155 ~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~  184 (362)
T 3goz_A          155 SDELIQILAAIPANVNSLNLRGNNLASKNC  184 (362)
T ss_dssp             HHHHHHHHHTSCTTCCEEECTTSCGGGSCH
T ss_pred             HHHHHHHHhcCCccccEeeecCCCCchhhH
Confidence                44456665 99999999999986543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.26  E-value=7.9e-08  Score=79.88  Aligned_cols=65  Identities=17%  Similarity=0.119  Sum_probs=41.6

Q ss_pred             CCCCCcEEEccCCccccc----cCCCccccccCCCCCCCEEEccCCCCCC----CChHHhhcCCCCCEEEcccccccc
Q 036330          109 PFQELESLDLSYNSFYGV----YEKEGMYLSIGSLKWLKILNLYSNNVNN----SLLPSLTTIISLTNLSLGYCGIEG  178 (187)
Q Consensus       109 ~l~~L~~L~Ls~N~l~g~----ip~~~~~~~~~~l~~L~~L~Ls~N~l~G----~iP~~l~~l~~L~~L~Ls~N~l~G  178 (187)
                      ..+.|++|||++|.++..    ++     ..+...++|++|+|++|.++.    .++..+...++|++|+|++|.|+.
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~-----~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLA-----AQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHH-----HHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHH-----HHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence            455667777777766532    22     345556677777777777764    234445566778888888777763

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.23  E-value=1.7e-07  Score=78.74  Aligned_cols=90  Identities=19%  Similarity=0.146  Sum_probs=55.5

Q ss_pred             CEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCcccccc-----CCCCCCCEEEccCCCCCCC---
Q 036330           84 RVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSI-----GSLKWLKILNLYSNNVNNS---  155 (187)
Q Consensus        84 ~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~-----~~l~~L~~L~Ls~N~l~G~---  155 (187)
                      +++.|+++++.++..+...-+..+..+++|++|++++|.+++..+     ..+     ...++|++|++++|++++.   
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~-----~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~  160 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGL-----QLLCEGLLDPQCRLEKLQLEYCSLSAASCE  160 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHH-----HHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHH-----HHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence            588888888887321100112336677888888888888765433     222     2245677777777777653   


Q ss_pred             -ChHHhhcCCCCCEEEcccccccc
Q 036330          156 -LLPSLTTIISLTNLSLGYCGIEG  178 (187)
Q Consensus       156 -iP~~l~~l~~L~~L~Ls~N~l~G  178 (187)
                       ++..+..+++|++|++++|.+++
T Consensus       161 ~l~~~l~~~~~L~~L~L~~n~i~~  184 (461)
T 1z7x_W          161 PLASVLRAKPDFKELTVSNNDINE  184 (461)
T ss_dssp             HHHHHHHHCTTCCEEECCSSBCHH
T ss_pred             HHHHHHhhCCCCCEEECcCCCcch
Confidence             35555666777777777776653

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.10  E-value=7.6e-07  Score=73.91  Aligned_cols=64  Identities=19%  Similarity=0.232  Sum_probs=44.6

Q ss_pred             CCCCcEEEccCCccccc----cCCCccccccCCCCCCCEEEccCCCCCC----CChHHhhcCCCCCEEEcccccccc
Q 036330          110 FQELESLDLSYNSFYGV----YEKEGMYLSIGSLKWLKILNLYSNNVNN----SLLPSLTTIISLTNLSLGYCGIEG  178 (187)
Q Consensus       110 l~~L~~L~Ls~N~l~g~----ip~~~~~~~~~~l~~L~~L~Ls~N~l~G----~iP~~l~~l~~L~~L~Ls~N~l~G  178 (187)
                      .+.|+.|+|++|.++..    ++     ..+...++|++|+|++|+++.    .++..+...++|+.|+|++|.++.
T Consensus       154 ~~~L~~L~Ls~n~l~~~~~~~l~-----~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~  225 (372)
T 3un9_A          154 QCQITTLRLSNNPLTAAGVAVLM-----EGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD  225 (372)
T ss_dssp             TCCCCEEECCSSCCHHHHHHHHH-----HHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred             CCccceeeCCCCCCChHHHHHHH-----HHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence            45677777777777542    22     344667788888888888764    235566777788888888888763

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.09  E-value=3.6e-06  Score=68.78  Aligned_cols=64  Identities=9%  Similarity=0.127  Sum_probs=38.3

Q ss_pred             CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcE-EEccCCccccccCCCccccccCCCCCCCEEEccCCCCCC
Q 036330           83 RRVKELSLDGITLGANSGFLNLSMFLPFQELES-LDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNN  154 (187)
Q Consensus        83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~-L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G  154 (187)
                      .+++.|+|++|.+.   ..++...|.++++++. +.+.+|+++...|     ..+..+++|++|++++|++++
T Consensus        54 ~~L~~L~Ls~N~i~---~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~-----~~f~~l~~L~~L~l~~n~l~~  118 (350)
T 4ay9_X           54 GDLEKIEISQNDVL---EVIEADVFSNLPKLHEIRIEKANNLLYINP-----EAFQNLPNLQYLLISNTGIKH  118 (350)
T ss_dssp             TTCCEEEEECCTTC---CEECTTSBCSCTTCCEEEEEEETTCCEECT-----TSBCCCTTCCEEEEEEECCSS
T ss_pred             CCCCEEECcCCCCC---CccChhHhhcchhhhhhhcccCCcccccCc-----hhhhhcccccccccccccccc
Confidence            56889999998872   1222334555555543 4455566664444     456666666666666666654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.07  E-value=4.9e-06  Score=67.34  Aligned_cols=90  Identities=12%  Similarity=0.018  Sum_probs=73.1

Q ss_pred             CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCC-EEEccCCCCCCCChHHhh
Q 036330           83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLK-ILNLYSNNVNNSLLPSLT  161 (187)
Q Consensus        83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~-~L~Ls~N~l~G~iP~~l~  161 (187)
                      ..++.|+|++++++    .++...|..+++|+.|++++| +. .|+.    ..|.++++|+ .+++.+ +++..-+..|.
T Consensus       226 ~~L~~l~L~~n~i~----~I~~~aF~~~~~L~~l~l~~n-i~-~I~~----~aF~~~~~L~~~l~l~~-~l~~I~~~aF~  294 (329)
T 3sb4_A          226 PNLVSLDISKTNAT----TIPDFTFAQKKYLLKIKLPHN-LK-TIGQ----RVFSNCGRLAGTLELPA-SVTAIEFGAFM  294 (329)
T ss_dssp             TTCCEEECTTBCCC----EECTTTTTTCTTCCEEECCTT-CC-EECT----TTTTTCTTCCEEEEECT-TCCEECTTTTT
T ss_pred             CCCeEEECCCCCcc----eecHhhhhCCCCCCEEECCcc-cc-eehH----HHhhCChhccEEEEEcc-cceEEchhhhh
Confidence            46899999998884    344466889999999999998 65 4653    6789999999 999988 77644457899


Q ss_pred             cCCCCCEEEcccccccccCCCCC
Q 036330          162 TIISLTNLSLGYCGIEGFIPNQG  184 (187)
Q Consensus       162 ~l~~L~~L~Ls~N~l~G~iP~~~  184 (187)
                      +|++|+.++++.|+++ .|+...
T Consensus       295 ~c~~L~~l~l~~n~i~-~I~~~a  316 (329)
T 3sb4_A          295 GCDNLRYVLATGDKIT-TLGDEL  316 (329)
T ss_dssp             TCTTEEEEEECSSCCC-EECTTT
T ss_pred             CCccCCEEEeCCCccC-ccchhh
Confidence            9999999999999998 777643

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.04  E-value=4.9e-07  Score=67.75  Aligned_cols=90  Identities=20%  Similarity=0.179  Sum_probs=60.0

Q ss_pred             CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccc----cCCCccccccCCCCCCCEEEc--cCCCCCCC-
Q 036330           83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGV----YEKEGMYLSIGSLKWLKILNL--YSNNVNNS-  155 (187)
Q Consensus        83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~----ip~~~~~~~~~~l~~L~~L~L--s~N~l~G~-  155 (187)
                      ..++.|+|++|.+...+...-...+...+.|++|+|++|.+...    +.     ..+...+.|++|+|  ++|.++.. 
T Consensus        65 ~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~-----~~L~~n~~L~~L~L~~~~N~i~~~g  139 (185)
T 1io0_A           65 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV-----EALQSNTSLIELRIDNQSQPLGNNV  139 (185)
T ss_dssp             CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH-----HGGGGCSSCCEEECCCCSSCCCHHH
T ss_pred             CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH-----HHHHhCCCceEEEecCCCCCCCHHH
Confidence            46788888888873111100001233456788888888888753    33     45667788999999  77888753 


Q ss_pred             ---ChHHhhcCCCCCEEEccccccc
Q 036330          156 ---LLPSLTTIISLTNLSLGYCGIE  177 (187)
Q Consensus       156 ---iP~~l~~l~~L~~L~Ls~N~l~  177 (187)
                         +...+...++|++|+|++|.+.
T Consensus       140 ~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          140 EMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHHhCCCcCEEeccCCCCC
Confidence               3445666688999999888875

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.02  E-value=6.9e-07  Score=66.92  Aligned_cols=92  Identities=16%  Similarity=0.112  Sum_probs=67.0

Q ss_pred             CCCEEEEEcCCC-CCCCCCCCCCCccCcCCCCCcEEEccCCccccc----cCCCccccccCCCCCCCEEEccCCCCCCC-
Q 036330           82 TRRVKELSLDGI-TLGANSGFLNLSMFLPFQELESLDLSYNSFYGV----YEKEGMYLSIGSLKWLKILNLYSNNVNNS-  155 (187)
Q Consensus        82 ~~~v~~L~L~~~-~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~----ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~-  155 (187)
                      ...+++|+|+++ .+...+...-...+...+.|++|+|++|.+...    +.     ..+...+.|++|+|++|+++.. 
T Consensus        35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~-----~~L~~n~~L~~L~L~~N~i~~~g  109 (185)
T 1io0_A           35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALA-----EMLKVNNTLKSLNVESNFISGSG  109 (185)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHH-----HHHHHCSSCCEEECCSSCCCHHH
T ss_pred             CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHH-----HHHHhCCCcCEEECcCCcCCHHH
Confidence            357999999999 883111100012245568999999999998643    22     3455668899999999999753 


Q ss_pred             ---ChHHhhcCCCCCEEEc--ccccccc
Q 036330          156 ---LLPSLTTIISLTNLSL--GYCGIEG  178 (187)
Q Consensus       156 ---iP~~l~~l~~L~~L~L--s~N~l~G  178 (187)
                         +...+...++|++|+|  ++|.++.
T Consensus       110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~  137 (185)
T 1io0_A          110 ILALVEALQSNTSLIELRIDNQSQPLGN  137 (185)
T ss_dssp             HHHHHHGGGGCSSCCEEECCCCSSCCCH
T ss_pred             HHHHHHHHHhCCCceEEEecCCCCCCCH
Confidence               5566778899999999  8899874

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.82  E-value=7.9e-06  Score=70.63  Aligned_cols=65  Identities=12%  Similarity=-0.044  Sum_probs=51.4

Q ss_pred             CCCCcEEEccCCcccc-ccCCCccccccCCCCCCCEEEccCCCCCCC-ChHHhhcCCCCCEEEccccccccc
Q 036330          110 FQELESLDLSYNSFYG-VYEKEGMYLSIGSLKWLKILNLYSNNVNNS-LLPSLTTIISLTNLSLGYCGIEGF  179 (187)
Q Consensus       110 l~~L~~L~Ls~N~l~g-~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~-iP~~l~~l~~L~~L~Ls~N~l~G~  179 (187)
                      +++|++|++++|.+++ .++     ..+..+++|++|++++|.+++. ++..+..+++|++|++++|++++.
T Consensus       462 ~~~L~~L~L~~n~l~~~~~~-----~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          462 SPNVRWMLLGYVGESDEGLM-----EFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             CTTCCEEEECSCCSSHHHHH-----HHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             CccceEeeccCCCCCHHHHH-----HHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            6778888888888876 344     4567889999999999998764 455567899999999999998854

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.57  E-value=3.8e-05  Score=57.32  Aligned_cols=84  Identities=13%  Similarity=0.085  Sum_probs=62.0

Q ss_pred             CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCc-cccccCCCccccccCCC----CCCCEEEccCCC-CCCCC
Q 036330           83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNS-FYGVYEKEGMYLSIGSL----KWLKILNLYSNN-VNNSL  156 (187)
Q Consensus        83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~-l~g~ip~~~~~~~~~~l----~~L~~L~Ls~N~-l~G~i  156 (187)
                      -++++||+++..++..+    ...+..+++|+.|+|+++. ++..--     ..+..+    ++|++|+|+++. ++..=
T Consensus        61 ~~L~~LDLs~~~Itd~G----L~~L~~~~~L~~L~L~~C~~ItD~gL-----~~L~~~~~~~~~L~~L~Ls~C~~ITD~G  131 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIG----FDHMEGLQYVEKIRLCKCHYIEDGCL-----ERLSQLENLQKSMLEMEIISCGNVTDKG  131 (176)
T ss_dssp             CCEEEEEEESCCCCGGG----GGGGTTCSCCCEEEEESCTTCCHHHH-----HHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred             ceEeEEeCcCCCccHHH----HHHhcCCCCCCEEEeCCCCccCHHHH-----HHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence            46999999999884222    2336789999999999984 664322     345554    479999999975 76533


Q ss_pred             hHHhhcCCCCCEEEccccc
Q 036330          157 LPSLTTIISLTNLSLGYCG  175 (187)
Q Consensus       157 P~~l~~l~~L~~L~Ls~N~  175 (187)
                      -..+.++++|+.|+|++..
T Consensus       132 l~~L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          132 IIALHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             HHHGGGCTTCCEEEEESCT
T ss_pred             HHHHhcCCCCCEEECCCCC
Confidence            3567889999999998764

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.49  E-value=3.8e-05  Score=66.34  Aligned_cols=65  Identities=18%  Similarity=0.182  Sum_probs=44.3

Q ss_pred             CCCCCcEEEccCCccccc----cCCCccccccCCCCCCCEEEccCCCCC----CCChHHhhcCCCCCEEEcccccccc
Q 036330          109 PFQELESLDLSYNSFYGV----YEKEGMYLSIGSLKWLKILNLYSNNVN----NSLLPSLTTIISLTNLSLGYCGIEG  178 (187)
Q Consensus       109 ~l~~L~~L~Ls~N~l~g~----ip~~~~~~~~~~l~~L~~L~Ls~N~l~----G~iP~~l~~l~~L~~L~Ls~N~l~G  178 (187)
                      .+++|++|+|++|.+++.    ++     ..+..+++|++|+++.|.++    +.++..+.++++|+.|++++|.+++
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~-----~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~  234 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLH-----ELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE  234 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHH-----HHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG
T ss_pred             hCCCCCEEECccccccCcchhHHH-----HHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH
Confidence            467788888888877654    32     33456677778888777776    2345555677778888887777654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.36  E-value=0.00039  Score=49.04  Aligned_cols=55  Identities=15%  Similarity=0.010  Sum_probs=40.4

Q ss_pred             EEEcCCCCCC--CCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCC
Q 036330           87 ELSLDGITLG--ANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVN  153 (187)
Q Consensus        87 ~L~L~~~~l~--~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~  153 (187)
                      .++.++++++  .++..+       -++|+.|+|++|.|+ .+|.    ..|..+++|+.|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~l-------p~~l~~L~Ls~N~l~-~l~~----~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF-------PVDTTELVLTGNNLT-ALPP----GLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC-------CTTCSEEECTTSCCS-SCCT----TTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCC-------CcCCCEEECCCCcCC-ccCh----hhhhhccccCEEEecCCCee
Confidence            6888888883  222211       136899999999998 4552    56788899999999999874

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.27  E-value=5.1e-05  Score=62.74  Aligned_cols=40  Identities=18%  Similarity=0.297  Sum_probs=22.0

Q ss_pred             CCCCCCEEEccCCCCCCC----ChHHhhcCCCCCEEEccccccc
Q 036330          138 SLKWLKILNLYSNNVNNS----LLPSLTTIISLTNLSLGYCGIE  177 (187)
Q Consensus       138 ~l~~L~~L~Ls~N~l~G~----iP~~l~~l~~L~~L~Ls~N~l~  177 (187)
                      .+++|++|+|+.|++++.    ++..+..+++|+.|+|++|.++
T Consensus       277 ~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          277 ILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             SGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             cCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            355666666666666542    2333344566666666666554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.20  E-value=7.7e-05  Score=64.34  Aligned_cols=63  Identities=11%  Similarity=0.214  Sum_probs=32.8

Q ss_pred             CCCCcEEEccCCccccccCCCcccccc-CCCCCCCEEEccCCCCCCCChH-HhhcCCCCCEEEccccccc
Q 036330          110 FQELESLDLSYNSFYGVYEKEGMYLSI-GSLKWLKILNLYSNNVNNSLLP-SLTTIISLTNLSLGYCGIE  177 (187)
Q Consensus       110 l~~L~~L~Ls~N~l~g~ip~~~~~~~~-~~l~~L~~L~Ls~N~l~G~iP~-~l~~l~~L~~L~Ls~N~l~  177 (187)
                      +++|+.|++++|.+++..+     ..+ ..+++|++|+|++|.+++..+. .+..+++|+.|++++|.++
T Consensus       455 ~~~L~~L~L~~~~i~~~~~-----~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          455 AKKMEMLSVAFAGDSDLGM-----HHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             CTTCCEEEEESCCSSHHHH-----HHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred             chhccEeeccCCCCcHHHH-----HHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence            4455555555555544332     222 4456666666666666433322 2234566666666666553

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.13  E-value=0.00013  Score=62.92  Aligned_cols=66  Identities=18%  Similarity=0.130  Sum_probs=46.6

Q ss_pred             cCCCCCcEEEccCCccccccCCCccccccCC-CCCCCEEEccCCCCCCCChHHh-hcCCCCCEEEccccccccc
Q 036330          108 LPFQELESLDLSYNSFYGVYEKEGMYLSIGS-LKWLKILNLYSNNVNNSLLPSL-TTIISLTNLSLGYCGIEGF  179 (187)
Q Consensus       108 ~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~-l~~L~~L~Ls~N~l~G~iP~~l-~~l~~L~~L~Ls~N~l~G~  179 (187)
                      ..+++|+.|++++ .+++..+     ..+.. +++|++|+|++|.+++..+..+ ..+++|+.|+|++|.+++.
T Consensus       429 ~~~~~L~~L~L~~-~l~~~~~-----~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~  496 (594)
T 2p1m_B          429 EHCKDLRRLSLSG-LLTDKVF-----EYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDK  496 (594)
T ss_dssp             HHCTTCCEEECCS-SCCHHHH-----HHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHH
T ss_pred             hhCCCccEEeecC-cccHHHH-----HHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHH
Confidence            3456667777755 4444433     34444 7889999999999877655555 6789999999999988643

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=96.98  E-value=0.00087  Score=53.92  Aligned_cols=78  Identities=12%  Similarity=0.023  Sum_probs=62.2

Q ss_pred             CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCc-EEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhh
Q 036330           83 RRVKELSLDGITLGANSGFLNLSMFLPFQELE-SLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLT  161 (187)
Q Consensus        83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~-~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~  161 (187)
                      .++++|+|+.+ ++    .+....|..+++|+ .+++.+ .++ .|+.    ..|.++++|+.++++.|+++..-+..|.
T Consensus       250 ~~L~~l~l~~n-i~----~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~----~aF~~c~~L~~l~l~~n~i~~I~~~aF~  318 (329)
T 3sb4_A          250 KYLLKIKLPHN-LK----TIGQRVFSNCGRLAGTLELPA-SVT-AIEF----GAFMGCDNLRYVLATGDKITTLGDELFG  318 (329)
T ss_dssp             TTCCEEECCTT-CC----EECTTTTTTCTTCCEEEEECT-TCC-EECT----TTTTTCTTEEEEEECSSCCCEECTTTTC
T ss_pred             CCCCEEECCcc-cc----eehHHHhhCChhccEEEEEcc-cce-EEch----hhhhCCccCCEEEeCCCccCccchhhhc
Confidence            36889999887 63    34446688999999 999998 665 4442    6899999999999999999855555899


Q ss_pred             cCCCCCEEEc
Q 036330          162 TIISLTNLSL  171 (187)
Q Consensus       162 ~l~~L~~L~L  171 (187)
                      ++++|+.++.
T Consensus       319 ~~~~L~~ly~  328 (329)
T 3sb4_A          319 NGVPSKLIYK  328 (329)
T ss_dssp             TTCCCCEEEC
T ss_pred             CCcchhhhcc
Confidence            9999998863

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.93  E-value=0.002  Score=45.24  Aligned_cols=55  Identities=16%  Similarity=0.030  Sum_probs=28.1

Q ss_pred             EEEccCCccc-cccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccc
Q 036330          115 SLDLSYNSFY-GVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGI  176 (187)
Q Consensus       115 ~L~Ls~N~l~-g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l  176 (187)
                      .++.+++.++ ..+|     ..+  .++|++|+|++|+|+..-+..|..+++|+.|+|++|.+
T Consensus        12 ~v~Cs~~~L~~~~vP-----~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLP-----TAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSC-----SCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCC-----CCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            4555555554 2344     222  13456666666666532233455566666666666644

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=96.32  E-value=0.0079  Score=50.09  Aligned_cols=46  Identities=9%  Similarity=0.077  Sum_probs=26.8

Q ss_pred             cccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccccCCC
Q 036330          134 LSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPN  182 (187)
Q Consensus       134 ~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~  182 (187)
                      ..|.++++|+.++|..| ++-.-+..|.++ +|+.+++.+|.+. .++.
T Consensus       317 ~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~-~l~~  362 (401)
T 4fdw_A          317 GLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP-QVFE  362 (401)
T ss_dssp             TTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC-BCCC
T ss_pred             hhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc-cccc
Confidence            34566666777766443 442223456666 7777777777655 3443

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=96.20  E-value=0.0028  Score=47.12  Aligned_cols=62  Identities=13%  Similarity=0.333  Sum_probs=47.3

Q ss_pred             CCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCC-CCCCChHHhhcC----CCCCEEEccccc-cc
Q 036330          111 QELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNN-VNNSLLPSLTTI----ISLTNLSLGYCG-IE  177 (187)
Q Consensus       111 ~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~-l~G~iP~~l~~l----~~L~~L~Ls~N~-l~  177 (187)
                      ..|+.||++++.++..--     ..+..+++|++|+|+++. ++..--..+..+    ++|++|+|+++. ++
T Consensus        61 ~~L~~LDLs~~~Itd~GL-----~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT  128 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGF-----DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT  128 (176)
T ss_dssp             CCEEEEEEESCCCCGGGG-----GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred             ceEeEEeCcCCCccHHHH-----HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence            369999999998875433     467899999999999985 665333456664    479999999874 55

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.95  E-value=0.001  Score=50.38  Aligned_cols=93  Identities=10%  Similarity=0.119  Sum_probs=43.2

Q ss_pred             CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCC---CCCC----C
Q 036330           83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSN---NVNN----S  155 (187)
Q Consensus        83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N---~l~G----~  155 (187)
                      ..++.|+|++|.+...+...-...+..-+.|+.|+|++|.|...--. .+-..+..-+.|++|+|++|   .+..    .
T Consensus        70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~-ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~  148 (197)
T 1pgv_A           70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA-RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMD  148 (197)
T ss_dssp             SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH-HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHH
T ss_pred             CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH-HHHHHHhhCCceeEEECCCCcCcCcCHHHHHH
Confidence            45666666666662111000001122235667777777766532100 00023344455777777644   2221    1


Q ss_pred             ChHHhhcCCCCCEEEcccccc
Q 036330          156 LLPSLTTIISLTNLSLGYCGI  176 (187)
Q Consensus       156 iP~~l~~l~~L~~L~Ls~N~l  176 (187)
                      |-+.+..-+.|+.|+++.|..
T Consensus       149 ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          149 MMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHhCCCcCeEeccCCCc
Confidence            233344456677777766654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=95.64  E-value=0.0075  Score=49.65  Aligned_cols=70  Identities=13%  Similarity=0.087  Sum_probs=44.0

Q ss_pred             CCCCCcEEEccC--CccccccCCCcccccc--CCCCCCCEEEccCCCCCCCChHHhh---cCCCCCEEEcccccccc
Q 036330          109 PFQELESLDLSY--NSFYGVYEKEGMYLSI--GSLKWLKILNLYSNNVNNSLLPSLT---TIISLTNLSLGYCGIEG  178 (187)
Q Consensus       109 ~l~~L~~L~Ls~--N~l~g~ip~~~~~~~~--~~l~~L~~L~Ls~N~l~G~iP~~l~---~l~~L~~L~Ls~N~l~G  178 (187)
                      .+++|+.|+|+.  |...|......+-..+  ..+++|++|+|.+|.+.+..+..+.   .+++|++|+|+.|.+++
T Consensus       217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d  293 (362)
T 2ra8_A          217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD  293 (362)
T ss_dssp             BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred             cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence            567888888753  2221210000000112  3578999999999988765555554   47889999999999875

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=95.59  E-value=0.021  Score=47.44  Aligned_cols=72  Identities=13%  Similarity=0.048  Sum_probs=49.2

Q ss_pred             ccCcCCCCCcEEEccCCccc----cccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccccC
Q 036330          105 SMFLPFQELESLDLSYNSFY----GVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFI  180 (187)
Q Consensus       105 ~~l~~l~~L~~L~Ls~N~l~----g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~i  180 (187)
                      ..|..+++|+.+++.+|.+.    ..++.    ..|.++++|+.+++. +.++-.-...|.+|++|+.++|..| ++ .|
T Consensus       265 ~aF~~c~~L~~l~l~~~~~~~~~~~~I~~----~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~-~I  337 (401)
T 4fdw_A          265 RAFYYCPELAEVTTYGSTFNDDPEAMIHP----YCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VT-QI  337 (401)
T ss_dssp             TTTTTCTTCCEEEEESSCCCCCTTCEECT----TTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CC-EE
T ss_pred             hHhhCCCCCCEEEeCCccccCCcccEECH----HHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-cc-EE
Confidence            45777888888888887764    12442    567888889988888 4465322346888889999988654 44 45


Q ss_pred             CCC
Q 036330          181 PNQ  183 (187)
Q Consensus       181 P~~  183 (187)
                      +..
T Consensus       338 ~~~  340 (401)
T 4fdw_A          338 NFS  340 (401)
T ss_dssp             CTT
T ss_pred             cHH
Confidence            443

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.42  E-value=0.011  Score=44.63  Aligned_cols=92  Identities=16%  Similarity=0.177  Sum_probs=58.8

Q ss_pred             CCCEEEEEcCCC-CCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCC----C
Q 036330           82 TRRVKELSLDGI-TLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNS----L  156 (187)
Q Consensus        82 ~~~v~~L~L~~~-~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~----i  156 (187)
                      ...+++|+|+++ .+...+...-...+..-+.|+.|+|++|.+...--. .+-..+..-+.|++|+|+.|++...    |
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~-alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al  118 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEAR-GLIELIETSPSLRVLNVESNFLTPELLARL  118 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHT-THHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHH-HHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence            467999999985 772111000011244457899999999999743220 0002334457899999999999753    2


Q ss_pred             hHHhhcCCCCCEEEcccc
Q 036330          157 LPSLTTIISLTNLSLGYC  174 (187)
Q Consensus       157 P~~l~~l~~L~~L~Ls~N  174 (187)
                      -+.+..-+.|+.|+|++|
T Consensus       119 a~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          119 LRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHTTTTCCCSEEECCCC
T ss_pred             HHHHhhCCceeEEECCCC
Confidence            234445578999999865

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=92.87  E-value=0.36  Score=39.39  Aligned_cols=64  Identities=16%  Similarity=0.181  Sum_probs=44.0

Q ss_pred             ccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCCh-HHhhcCCCCCEEEcccccc
Q 036330          105 SMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLL-PSLTTIISLTNLSLGYCGI  176 (187)
Q Consensus       105 ~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP-~~l~~l~~L~~L~Ls~N~l  176 (187)
                      ..|..+++|+.+++..+ ++ .|..    ..|.++.+|+.+.+..+ ++ .|+ .+|.+|++|+.+++.+|..
T Consensus       305 ~aF~~c~~L~~i~lp~~-v~-~I~~----~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~~~  369 (394)
T 4gt6_A          305 SVFAGCISLKSIDIPEG-IT-QILD----DAFAGCEQLERIAIPSS-VT-KIPESAFSNCTALNNIEYSGSRS  369 (394)
T ss_dssp             TTTTTCTTCCEEECCTT-CC-EECT----TTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTTCCEEEESSCHH
T ss_pred             eeecCCCCcCEEEeCCc-cc-EehH----hHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCCCCEEEECCcee
Confidence            34666777777777654 33 3332    46788888999888654 55 344 4688899999998887643

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=92.46  E-value=0.2  Score=40.93  Aligned_cols=62  Identities=21%  Similarity=0.182  Sum_probs=42.9

Q ss_pred             ccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCCh-HHhhcCCCCCEEEcccc
Q 036330          105 SMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLL-PSLTTIISLTNLSLGYC  174 (187)
Q Consensus       105 ~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP-~~l~~l~~L~~L~Ls~N  174 (187)
                      ..|..+++|+.+++..+ ++ .|+.    ..|.++++|+.+++..| ++ .|+ .+|.+|++|+.+++..|
T Consensus       314 ~aF~~c~~L~~i~lp~~-v~-~I~~----~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          314 EAFESCTSLVSIDLPYL-VE-EIGK----RSFRGCTSLSNINFPLS-LR-KIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             TTTTTCTTCCEECCCTT-CC-EECT----TTTTTCTTCCEECCCTT-CC-EECTTTBTTCTTCCEEEEEGG
T ss_pred             hhhcCCCCCCEEEeCCc-cc-EEhH----HhccCCCCCCEEEECcc-cc-EehHHHhhCCCCCCEEEECCC
Confidence            34667778888888654 43 3442    56778888888888766 55 343 46788888888888654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=92.34  E-value=0.21  Score=40.46  Aligned_cols=61  Identities=10%  Similarity=0.071  Sum_probs=38.7

Q ss_pred             cCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCCh-HHhhcCCCCCEEEccc
Q 036330          106 MFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLL-PSLTTIISLTNLSLGY  173 (187)
Q Consensus       106 ~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP-~~l~~l~~L~~L~Ls~  173 (187)
                      .|..+++|+.+++.++.++ .|+.    ..|.++.+|+.++|..+ ++ .|+ .+|.++++|+.+.+..
T Consensus       281 aF~~c~~L~~i~l~~~~i~-~I~~----~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          281 LCSGCSNLTKVVMDNSAIE-TLEP----RVFMDCVKLSSVTLPTA-LK-TIQVYAFKNCKALSTISYPK  342 (379)
T ss_dssp             TTTTCTTCCEEEECCTTCC-EECT----TTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCCCCCCT
T ss_pred             ccccccccccccccccccc-eehh----hhhcCCCCCCEEEcCcc-cc-EEHHHHhhCCCCCCEEEECC
Confidence            3556677777777766665 3432    46777777888877643 44 333 3577777777776643

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=91.25  E-value=0.56  Score=37.82  Aligned_cols=70  Identities=10%  Similarity=0.090  Sum_probs=47.2

Q ss_pred             cCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccccCCCC
Q 036330          106 MFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPNQ  183 (187)
Q Consensus       106 ~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~  183 (187)
                      .+..+..|+.+++..+ +. .++.    ..+.++++|+.+++..+.++-.-...|.++.+|+.+.|..+ ++ .|+..
T Consensus       258 aF~~~~~l~~i~l~~~-i~-~i~~----~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~  327 (379)
T 4h09_A          258 LLQNCTALKTLNFYAK-VK-TVPY----LLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-TIQVY  327 (379)
T ss_dssp             TTTTCTTCCEEEECCC-CS-EECT----TTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECTT
T ss_pred             ccceeehhcccccccc-ce-eccc----cccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-cc-EEHHH
Confidence            3555667777777544 22 2331    46788999999999888887333457889999999998654 43 45443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=89.68  E-value=0.77  Score=37.40  Aligned_cols=67  Identities=13%  Similarity=0.251  Sum_probs=43.8

Q ss_pred             cCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCCh-HHhhcCCCCCEEEcccccccccCCC
Q 036330          106 MFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLL-PSLTTIISLTNLSLGYCGIEGFIPN  182 (187)
Q Consensus       106 ~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP-~~l~~l~~L~~L~Ls~N~l~G~iP~  182 (187)
                      .|.+++.|+.+++.. .++ .|+.    ..|.++.+|+.+++..+ ++ .|. .+|.+|++|+.+.+..+ ++ .|+.
T Consensus       283 aF~~c~~L~~i~l~~-~i~-~I~~----~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~C~~L~~i~ip~s-v~-~I~~  350 (394)
T 4gt6_A          283 AFMNCPALQDIEFSS-RIT-ELPE----SVFAGCISLKSIDIPEG-IT-QILDDAFAGCEQLERIAIPSS-VT-KIPE  350 (394)
T ss_dssp             TTTTCTTCCEEECCT-TCC-EECT----TTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEECTT-CC-BCCG
T ss_pred             ccccccccccccCCC-ccc-ccCc----eeecCCCCcCEEEeCCc-cc-EehHhHhhCCCCCCEEEECcc-cC-EEhH
Confidence            355667777777753 233 3442    46788889999998754 44 343 46888999999988644 44 4543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=85.47  E-value=1.1  Score=36.37  Aligned_cols=67  Identities=18%  Similarity=0.143  Sum_probs=45.0

Q ss_pred             CcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCCh-HHhhcCCCCCEEEcccccccccCCCC
Q 036330          107 FLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLL-PSLTTIISLTNLSLGYCGIEGFIPNQ  183 (187)
Q Consensus       107 l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP-~~l~~l~~L~~L~Ls~N~l~G~iP~~  183 (187)
                      +..+.+|+.+.+..+ ++ .|+.    ..|.++++|+.+++.++ ++ .|+ .+|.++++|+.+++..| ++ .|+..
T Consensus       293 F~~~~~L~~i~l~~~-i~-~I~~----~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~  360 (394)
T 4fs7_A          293 FYGCSSLTEVKLLDS-VK-FIGE----EAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS-LR-KIGAN  360 (394)
T ss_dssp             TTTCTTCCEEEECTT-CC-EECT----TTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT-CC-EECTT
T ss_pred             ccccccccccccccc-cc-eech----hhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc-cc-EehHH
Confidence            445666777777654 33 2332    46788899999999754 55 343 56888999999998766 54 55543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	187
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.002
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.004

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 42.8 bits (99), Expect = 7e-06
 Identities = 26/98 (26%), Positives = 37/98 (37%), Gaps = 16/98 (16%)

Query: 30  CLETERTALLEIKRFFIAVRDTGYKDEILTSWVDDEMSDCCR--WEQVKCVNAT-TRRVK 86
           C   ++ ALL+IK+              L+SW+    +DCC   W  V C   T T RV 
Sbjct: 3   CNPQDKQALLQIKKDLG-------NPTTLSSWLPT--TDCCNRTWLGVLCDTDTQTYRVN 53

Query: 87  ELSLDGITLGANSGFLNLSMFLP-FQELESLDLSYNSF 123
            L L G+ L        +   L     L  L +   + 
Sbjct: 54  NLDLSGLNL---PKPYPIPSSLANLPYLNFLYIGGINN 88

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 5e-05
 Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 9/76 (11%)

Query: 106 MFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIIS 165
                + L  L L +N+   +         + SL  L+ L   +N V  S + SL  + +
Sbjct: 302 PISNLKNLTYLTLYFNNISDI-------SPVSSLTKLQRLFFANNKV--SDVSSLANLTN 352

Query: 166 LTNLSLGYCGIEGFIP 181
           +  LS G+  I    P
Sbjct: 353 INWLSAGHNQISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 24/120 (20%), Positives = 48/120 (40%), Gaps = 9/120 (7%)

Query: 66  MSDCCRWEQVKCVNATTRRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYG 125
           ++   R +      +    + +L+     +  N+   +++       L+ L L+ N    
Sbjct: 174 LTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD 233

Query: 126 VYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPNQGM 185
           +        ++ SL  L  L+L +N ++N  L  L+ +  LT L LG   I    P  G+
Sbjct: 234 IG-------TLASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISPLAGL 284

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.0 bits (79), Expect = 0.004
 Identities = 20/114 (17%), Positives = 42/114 (36%), Gaps = 17/114 (14%)

Query: 58  LTSWVDDEMSDCCRWEQVKCVNATTRRVKELSLDGITLGANSGFLNLSMFLPFQELESLD 117
           LT+  + E+++    +     N        L  + I+        ++S      +L+ L 
Sbjct: 284 LTALTNLELNENQLEDISPISNLKNLTYLTLYFNNIS--------DISPVSSLTKLQRLF 335

Query: 118 LSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSL 171
            + N    V        S+ +L  +  L+   N +++  L  L  +  +T L L
Sbjct: 336 FANNKVSDVS-------SLANLTNINWLSAGHNQISD--LTPLANLTRITQLGL 380

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	187
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.92
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.51
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.32
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.29
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.23
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.22
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.15
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.07
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.06
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.06
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.01
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.0
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.99
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.98
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.83
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.74
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.73
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.72
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.69
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.69
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.6
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.57
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.56
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.51
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.46
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.29
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.25
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.05
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.05
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.87
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	97.76
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.72
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.71
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.52
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.49
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.47
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.39
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.02
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.94
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.48
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.34

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.92  E-value=1.6e-25  Score=179.93  Aligned_cols=137  Identities=29%  Similarity=0.481  Sum_probs=103.4

Q ss_pred             CCcHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCCCCC--CCcceeecCC-CCCCEEEEEcCCCCCCCCCCCCCCc
Q 036330           29 GCLETERTALLEIKRFFIAVRDTGYKDEILTSWVDDEMSDCC--RWEQVKCVNA-TTRRVKELSLDGITLGANSGFLNLS  105 (187)
Q Consensus        29 ~~~~~~~~~Ll~~k~~~~~~~p~~~~~~~l~~W~~~~~~~~C--~w~gv~C~~~-~~~~v~~L~L~~~~l~~~~~~~~~~  105 (187)
                      -|.++|++||++||+++.  +|     ..+++|..+  +|||  .|.||+|+.. ...||++|+|+++++++.. .++ +
T Consensus         2 ~c~~~e~~aLl~~k~~~~--~~-----~~l~sW~~~--~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~-~lp-~   70 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLG--NP-----TTLSSWLPT--TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPY-PIP-S   70 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTT--CC-----GGGTTCCTT--SCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCE-ECC-G
T ss_pred             CCCHHHHHHHHHHHHHCC--CC-----CcCCCCCCC--CCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCC-CCC-h
Confidence            478999999999999997  45     358999865  7999  5999999862 2348999999999994321 233 4


Q ss_pred             cCcCCCCCcEEEccC-CccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccccCC
Q 036330          106 MFLPFQELESLDLSY-NSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIP  181 (187)
Q Consensus       106 ~l~~l~~L~~L~Ls~-N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP  181 (187)
                      .+.+|++|++|+|++ |+++|.+|     ..++++++|++|+|++|++.|..|..+..+.+|++++++.|.+.+.+|
T Consensus        71 ~l~~L~~L~~L~Ls~~N~l~g~iP-----~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p  142 (313)
T d1ogqa_          71 SLANLPYLNFLYIGGINNLVGPIP-----PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP  142 (313)
T ss_dssp             GGGGCTTCSEEEEEEETTEESCCC-----GGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCC
T ss_pred             HHhcCccccccccccccccccccc-----cccccccccchhhhccccccccccccccchhhhcccccccccccccCc
Confidence            588999999999986 89999999     788888888888888887776555555555555555555555554444

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.51  E-value=1.8e-14  Score=107.46  Aligned_cols=106  Identities=20%  Similarity=0.232  Sum_probs=82.4

Q ss_pred             CCCCcceeecCC--------CCCCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCC
Q 036330           69 CCRWEQVKCVNA--------TTRRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLK  140 (187)
Q Consensus        69 ~C~w~gv~C~~~--------~~~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~  140 (187)
                      .|+|..|.|+..        ....++.|+|++|.++   .......|..+++|+.|+|++|.+.+..+     ..+..++
T Consensus         7 ~C~~~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~---~~~~~~~f~~l~~L~~L~L~~N~i~~~~~-----~~~~~~~   78 (192)
T d1w8aa_           7 HCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELG---RISSDGLFGRLPHLVKLELKRNQLTGIEP-----NAFEGAS   78 (192)
T ss_dssp             EEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCC---SBCCSCSGGGCTTCCEEECCSSCCCCBCT-----TTTTTCT
T ss_pred             EEcCCEEEEeCCCcCccCCCCCCCCCEEEeCCCCCc---ccccccccCCCceEeeeeccccccccccc-----ccccccc
Confidence            367888888641        1236889999999993   22333557788999999999999987776     7788888


Q ss_pred             CCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccccCCCC
Q 036330          141 WLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPNQ  183 (187)
Q Consensus       141 ~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~  183 (187)
                      +|++|+|++|++++..|..|.++++|++|+|++|+|+ .||+.
T Consensus        79 ~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~-~i~~~  120 (192)
T d1w8aa_          79 HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQIS-CVMPG  120 (192)
T ss_dssp             TCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCC-EECTT
T ss_pred             ccceeeeccccccccCHHHHhCCCcccccccCCcccc-ccCHH
Confidence            9999999999998766667888999999999999988 45543

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.32  E-value=7.3e-13  Score=105.05  Aligned_cols=71  Identities=25%  Similarity=0.295  Sum_probs=62.8

Q ss_pred             CcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccccCCCC
Q 036330          107 FLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPNQ  183 (187)
Q Consensus       107 l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~  183 (187)
                      +..++.++.+++++|.+.+.+|      .++.+++|++|+|++|+++|.+|+.++++++|++|+|++|+|+|.||..
T Consensus       217 ~~~~~~l~~l~~~~~~l~~~~~------~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~  287 (313)
T d1ogqa_         217 FGSDKNTQKIHLAKNSLAFDLG------KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG  287 (313)
T ss_dssp             CCTTSCCSEEECCSSEECCBGG------GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred             cccccccccccccccccccccc------ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCc
Confidence            5567888999999999888765      6888899999999999999999999999999999999999999999974

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.29  E-value=4.7e-12  Score=88.10  Aligned_cols=84  Identities=25%  Similarity=0.239  Sum_probs=68.7

Q ss_pred             CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCC-hHHhh
Q 036330           83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSL-LPSLT  161 (187)
Q Consensus        83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~i-P~~l~  161 (187)
                      ..+++|++++|.++.    ++ +.+..+++|+.|++++|.++. +|      .+..+++|++|++++|+++..- +..++
T Consensus        20 ~~L~~L~ls~N~l~~----lp-~~~~~l~~L~~L~l~~N~i~~-l~------~~~~l~~L~~L~l~~N~i~~~~~~~~l~   87 (124)
T d1dcea3          20 LLVTHLDLSHNRLRA----LP-PALAALRCLEVLQASDNALEN-VD------GVANLPRLQELLLCNNRLQQSAAIQPLV   87 (124)
T ss_dssp             TTCCEEECCSSCCCC----CC-GGGGGCTTCCEEECCSSCCCC-CG------GGTTCSSCCEEECCSSCCCSSSTTGGGG
T ss_pred             CCCCEEECCCCccCc----ch-hhhhhhhcccccccccccccc-cC------ccccccccCeEECCCCccCCCCCchhhc
Confidence            468999999999842    32 247788999999999999984 55      5889999999999999998522 25688


Q ss_pred             cCCCCCEEEcccccccc
Q 036330          162 TIISLTNLSLGYCGIEG  178 (187)
Q Consensus       162 ~l~~L~~L~Ls~N~l~G  178 (187)
                      .+++|++|++++|.++.
T Consensus        88 ~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          88 SCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             GCTTCCEEECTTSGGGG
T ss_pred             CCCCCCEEECCCCcCCc
Confidence            99999999999999984

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=1.8e-11  Score=88.33  Aligned_cols=99  Identities=21%  Similarity=0.164  Sum_probs=71.9

Q ss_pred             CCCCcceeecC----------CCCCCEEEEEcCCCC-CCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccC
Q 036330           69 CCRWEQVKCVN----------ATTRRVKELSLDGIT-LGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIG  137 (187)
Q Consensus        69 ~C~w~gv~C~~----------~~~~~v~~L~L~~~~-l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~  137 (187)
                      |+.+.++.|..          ....++++|++.+++ ++    .++...|..+++|+.|++++|.|+..-|     ..|.
T Consensus         7 c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~----~i~~~~f~~l~~L~~L~Ls~N~l~~i~~-----~~f~   77 (156)
T d2ifga3           7 PHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQ----HLELRDLRGLGELRNLTIVKSGLRFVAP-----DAFH   77 (156)
T ss_dssp             CSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCC----EECGGGSCSCCCCSEEECCSSCCCEECT-----TGGG
T ss_pred             cCCCCeEEecCCCCccCcccccCccccCeeecCCCcccc----ccCchhhccccccCcceeeccccCCccc-----cccc
Confidence            33567777764          112367888887664 63    3444557888899999999999885545     6788


Q ss_pred             CCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEccccccc
Q 036330          138 SLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIE  177 (187)
Q Consensus       138 ~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~  177 (187)
                      .+++|++|+|++|+++ .+|...-...+|+.|+|++|.+.
T Consensus        78 ~l~~L~~L~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          78 FTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             SCSCCCEEECCSSCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             ccccccceeccCCCCc-ccChhhhccccccccccCCCccc
Confidence            8899999999999998 56665545557899999998774

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.22  E-value=9.1e-12  Score=92.41  Aligned_cols=88  Identities=24%  Similarity=0.260  Sum_probs=76.3

Q ss_pred             CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhc
Q 036330           83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT  162 (187)
Q Consensus        83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~  162 (187)
                      .+++.|+|++|.+..    +....+..+++|++|+|++|++++..|     ..|.++++|++|+|++|++++..|..|..
T Consensus        54 ~~L~~L~L~~N~i~~----~~~~~~~~~~~L~~L~Ls~N~l~~l~~-----~~F~~l~~L~~L~L~~N~l~~i~~~~f~~  124 (192)
T d1w8aa_          54 PHLVKLELKRNQLTG----IEPNAFEGASHIQELQLGENKIKEISN-----KMFLGLHQLKTLNLYDNQISCVMPGSFEH  124 (192)
T ss_dssp             TTCCEEECCSSCCCC----BCTTTTTTCTTCCEEECCSCCCCEECS-----SSSTTCTTCCEEECCSSCCCEECTTSSTT
T ss_pred             ceEeeeecccccccc----ccccccccccccceeeeccccccccCH-----HHHhCCCcccccccCCccccccCHHHhcC
Confidence            578999999999842    333567889999999999999996555     67999999999999999999877778999


Q ss_pred             CCCCCEEEccccccccc
Q 036330          163 IISLTNLSLGYCGIEGF  179 (187)
Q Consensus       163 l~~L~~L~Ls~N~l~G~  179 (187)
                      +++|++|+|++|.+.+.
T Consensus       125 l~~L~~l~L~~N~~~~~  141 (192)
T d1w8aa_         125 LNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             CTTCCEEECTTCCBCCS
T ss_pred             Ccccccccccccccccc
Confidence            99999999999998754

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.15  E-value=8.4e-11  Score=81.56  Aligned_cols=81  Identities=21%  Similarity=0.237  Sum_probs=69.2

Q ss_pred             EEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCC
Q 036330           87 ELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISL  166 (187)
Q Consensus        87 ~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L  166 (187)
                      .|+|++|+++.    +  +.+..+++|++||+++|.++ .+|     +.++.+++|++|++++|++++ +| .++++++|
T Consensus         2 ~L~Ls~n~l~~----l--~~l~~l~~L~~L~ls~N~l~-~lp-----~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L   67 (124)
T d1dcea3           2 VLHLAHKDLTV----L--CHLEQLLLVTHLDLSHNRLR-ALP-----PALAALRCLEVLQASDNALEN-VD-GVANLPRL   67 (124)
T ss_dssp             EEECTTSCCSS----C--CCGGGGTTCCEEECCSSCCC-CCC-----GGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSC
T ss_pred             EEEcCCCCCCC----C--cccccCCCCCEEECCCCccC-cch-----hhhhhhhcccccccccccccc-cC-cccccccc
Confidence            58999999942    2  23778899999999999998 678     789999999999999999994 66 48999999


Q ss_pred             CEEEcccccccccCCC
Q 036330          167 TNLSLGYCGIEGFIPN  182 (187)
Q Consensus       167 ~~L~Ls~N~l~G~iP~  182 (187)
                      ++|++++|+++ .+|.
T Consensus        68 ~~L~l~~N~i~-~~~~   82 (124)
T d1dcea3          68 QELLLCNNRLQ-QSAA   82 (124)
T ss_dssp             CEEECCSSCCC-SSST
T ss_pred             CeEECCCCccC-CCCC
Confidence            99999999998 4443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=2.4e-10  Score=89.20  Aligned_cols=68  Identities=24%  Similarity=0.185  Sum_probs=46.1

Q ss_pred             CcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEccccccccc
Q 036330          107 FLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGF  179 (187)
Q Consensus       107 l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~  179 (187)
                      +..+++|+.+++++|.+++..|     ..|..+++|++||+++|++.+..|..++++++|++|++++|.+.+.
T Consensus       173 f~~l~~L~~l~l~~N~l~~i~~-----~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~  240 (284)
T d1ozna_         173 FRGLHSLDRLLLHQNRVAHVHP-----HAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD  240 (284)
T ss_dssp             TTTCTTCCEEECCSSCCCEECT-----TTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred             hccccccchhhhhhccccccCh-----hHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCC
Confidence            4455666666666666665555     6677777777777777777776666777777777777777776653

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=2.4e-10  Score=82.23  Aligned_cols=88  Identities=14%  Similarity=0.091  Sum_probs=71.1

Q ss_pred             EEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCC-ccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCC
Q 036330           86 KELSLDGITLGANSGFLNLSMFLPFQELESLDLSYN-SFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTII  164 (187)
Q Consensus        86 ~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N-~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~  164 (187)
                      ..++++++++...     +..+..+++|+.|++++| .++. ++.    ..|.++++|+.|+|++|+++..-|..|..++
T Consensus        11 ~~l~c~~~~~~~~-----p~~l~~l~~l~~L~l~~n~~l~~-i~~----~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~   80 (156)
T d2ifga3          11 SGLRCTRDGALDS-----LHHLPGAENLTELYIENQQHLQH-LEL----RDLRGLGELRNLTIVKSGLRFVAPDAFHFTP   80 (156)
T ss_dssp             SCEECCSSCCCTT-----TTTSCSCSCCSEEECCSCSSCCE-ECG----GGSCSCCCCSEEECCSSCCCEECTTGGGSCS
T ss_pred             CeEEecCCCCccC-----cccccCccccCeeecCCCccccc-cCc----hhhccccccCcceeeccccCCcccccccccc
Confidence            3478888887321     233667899999999876 4774 541    6799999999999999999976678899999


Q ss_pred             CCCEEEcccccccccCCCCC
Q 036330          165 SLTNLSLGYCGIEGFIPNQG  184 (187)
Q Consensus       165 ~L~~L~Ls~N~l~G~iP~~~  184 (187)
                      +|++|+|++|+|+ .||...
T Consensus        81 ~L~~L~Ls~N~l~-~l~~~~   99 (156)
T d2ifga3          81 RLSRLNLSFNALE-SLSWKT   99 (156)
T ss_dssp             CCCEEECCSSCCS-CCCSTT
T ss_pred             cccceeccCCCCc-ccChhh
Confidence            9999999999999 888754

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=1.6e-10  Score=83.73  Aligned_cols=83  Identities=19%  Similarity=0.134  Sum_probs=59.1

Q ss_pred             CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCCh--HHh
Q 036330           83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLL--PSL  160 (187)
Q Consensus        83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP--~~l  160 (187)
                      .+++.|+|++|.++..      +.+..+++|++|++++|.++...+     ..+..+++|++|++++|+++. ++  ..+
T Consensus        41 ~~L~~L~Ls~N~i~~l------~~~~~l~~L~~L~ls~N~i~~l~~-----~~~~~l~~L~~L~L~~N~i~~-~~~l~~l  108 (162)
T d1a9na_          41 DQFDAIDFSDNEIRKL------DGFPLLRRLKTLLVNNNRICRIGE-----GLDQALPDLTELILTNNSLVE-LGDLDPL  108 (162)
T ss_dssp             TCCSEEECCSSCCCEE------CCCCCCSSCCEEECCSSCCCEECS-----CHHHHCTTCCEEECCSCCCCC-GGGGGGG
T ss_pred             ccCCEEECCCCCCCcc------CCcccCcchhhhhcccccccCCCc-----cccccccccccceeccccccc-ccccccc
Confidence            4577788888877321      226677888888888888874322     334568888888888888873 44  357


Q ss_pred             hcCCCCCEEEccccccc
Q 036330          161 TTIISLTNLSLGYCGIE  177 (187)
Q Consensus       161 ~~l~~L~~L~Ls~N~l~  177 (187)
                      ..+++|++|++++|.++
T Consensus       109 ~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_         109 ASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             GGCTTCCEEECCSSGGG
T ss_pred             ccccccchhhcCCCccc
Confidence            77888888888888876

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=3.2e-10  Score=88.39  Aligned_cols=89  Identities=24%  Similarity=0.145  Sum_probs=69.3

Q ss_pred             CEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcC
Q 036330           84 RVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTI  163 (187)
Q Consensus        84 ~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l  163 (187)
                      .+..+++++|.++.    ++...+..+++|+.|++++|++++..+     ..+.++++|+++++++|++++..|..|..+
T Consensus       130 ~L~~l~l~~N~l~~----i~~~~f~~~~~L~~L~l~~N~l~~l~~-----~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l  200 (284)
T d1ozna_         130 ALQYLYLQDNALQA----LPDDTFRDLGNLTHLFLHGNRISSVPE-----RAFRGLHSLDRLLLHQNRVAHVHPHAFRDL  200 (284)
T ss_dssp             TCCEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCEECT-----TTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred             ccchhhhccccccc----cChhHhccccchhhcccccCcccccch-----hhhccccccchhhhhhccccccChhHhhhh
Confidence            45667777776632    222446677888889999988886555     678889999999999999998888889999


Q ss_pred             CCCCEEEcccccccccCC
Q 036330          164 ISLTNLSLGYCGIEGFIP  181 (187)
Q Consensus       164 ~~L~~L~Ls~N~l~G~iP  181 (187)
                      ++|++|++++|.+++..|
T Consensus       201 ~~L~~L~l~~N~i~~~~~  218 (284)
T d1ozna_         201 GRLMTLYLFANNLSALPT  218 (284)
T ss_dssp             TTCCEEECCSSCCSCCCH
T ss_pred             hhcccccccccccccccc
Confidence            999999999999985443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=3e-10  Score=82.17  Aligned_cols=83  Identities=20%  Similarity=0.213  Sum_probs=68.8

Q ss_pred             CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhc
Q 036330           83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT  162 (187)
Q Consensus        83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~  162 (187)
                      .++++|+|++|+++.+.     ..+..+++|+.|||++|.++ .++      .+..+++|++|++++|+++...+..+..
T Consensus        18 ~~lr~L~L~~n~I~~i~-----~~~~~l~~L~~L~Ls~N~i~-~l~------~~~~l~~L~~L~ls~N~i~~l~~~~~~~   85 (162)
T d1a9na_          18 VRDRELDLRGYKIPVIE-----NLGATLDQFDAIDFSDNEIR-KLD------GFPLLRRLKTLLVNNNRICRIGEGLDQA   85 (162)
T ss_dssp             TSCEEEECTTSCCCSCC-----CGGGGTTCCSEEECCSSCCC-EEC------CCCCCSSCCEEECCSSCCCEECSCHHHH
T ss_pred             CcCcEEECCCCCCCccC-----ccccccccCCEEECCCCCCC-ccC------CcccCcchhhhhcccccccCCCcccccc
Confidence            46899999999995332     23467899999999999998 555      5889999999999999999544445678


Q ss_pred             CCCCCEEEccccccc
Q 036330          163 IISLTNLSLGYCGIE  177 (187)
Q Consensus       163 l~~L~~L~Ls~N~l~  177 (187)
                      +++|+.|++++|+++
T Consensus        86 l~~L~~L~L~~N~i~  100 (162)
T d1a9na_          86 LPDLTELILTNNSLV  100 (162)
T ss_dssp             CTTCCEEECCSCCCC
T ss_pred             ccccccceecccccc
Confidence            999999999999987

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.99  E-value=4.4e-10  Score=88.24  Aligned_cols=89  Identities=24%  Similarity=0.276  Sum_probs=59.3

Q ss_pred             CEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcC
Q 036330           84 RVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTI  163 (187)
Q Consensus        84 ~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l  163 (187)
                      +++.++++++....    .....+..++.+++|++++|.+.+..+     ..+.++++|++|+|++|+++ .+|..+.++
T Consensus       172 ~L~~L~l~~n~~~~----~~~~~~~~~~~l~~L~~s~n~l~~~~~-----~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l  241 (305)
T d1xkua_         172 SLTELHLDGNKITK----VDAASLKGLNNLAKLGLSFNSISAVDN-----GSLANTPHLRELHLNNNKLV-KVPGGLADH  241 (305)
T ss_dssp             TCSEEECTTSCCCE----ECTGGGTTCTTCCEEECCSSCCCEECT-----TTGGGSTTCCEEECCSSCCS-SCCTTTTTC
T ss_pred             ccCEEECCCCcCCC----CChhHhhcccccccccccccccccccc-----ccccccccceeeeccccccc-ccccccccc
Confidence            45555555555421    111335566777777777777776555     56777778888888888777 567777777


Q ss_pred             CCCCEEEcccccccccCCCC
Q 036330          164 ISLTNLSLGYCGIEGFIPNQ  183 (187)
Q Consensus       164 ~~L~~L~Ls~N~l~G~iP~~  183 (187)
                      ++|++|+|++|+|+ .|+..
T Consensus       242 ~~L~~L~Ls~N~i~-~i~~~  260 (305)
T d1xkua_         242 KYIQVVYLHNNNIS-AIGSN  260 (305)
T ss_dssp             SSCCEEECCSSCCC-CCCTT
T ss_pred             cCCCEEECCCCccC-ccChh
Confidence            88888888888777 56543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=7.2e-10  Score=85.79  Aligned_cols=84  Identities=23%  Similarity=0.177  Sum_probs=49.1

Q ss_pred             CEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcC
Q 036330           84 RVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTI  163 (187)
Q Consensus        84 ~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l  163 (187)
                      ++..+++++|.++.    ++...+..++.++.+++++|++++..+     ..+..+++|++|+|++|+|+ .+|+.+..+
T Consensus       125 ~l~~L~l~~n~l~~----l~~~~~~~l~~l~~l~l~~N~l~~~~~-----~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~  194 (266)
T d1p9ag_         125 ELQELYLKGNELKT----LPPGLLTPTPKLEKLSLANNNLTELPA-----GLLNGLENLDTLLLQENSLY-TIPKGFFGS  194 (266)
T ss_dssp             TCCEEECTTSCCCC----CCTTTTTTCTTCCEEECTTSCCSCCCT-----TTTTTCTTCCEEECCSSCCC-CCCTTTTTT
T ss_pred             ccccccccccccce----eccccccccccchhcccccccccccCc-----cccccccccceeecccCCCc-ccChhHCCC
Confidence            34445555544421    222334455666666666666665444     45666666667777666666 566666666


Q ss_pred             CCCCEEEccccccc
Q 036330          164 ISLTNLSLGYCGIE  177 (187)
Q Consensus       164 ~~L~~L~Ls~N~l~  177 (187)
                      ++|+.|+|++|.+.
T Consensus       195 ~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         195 HLLPFAFLHGNPWL  208 (266)
T ss_dssp             CCCSEEECCSCCBC
T ss_pred             CCCCEEEecCCCCC
Confidence            66666766666543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=1.7e-09  Score=83.68  Aligned_cols=70  Identities=23%  Similarity=0.133  Sum_probs=54.3

Q ss_pred             CCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccccCCCCC
Q 036330          109 PFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPNQG  184 (187)
Q Consensus       109 ~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~~  184 (187)
                      .+.+++.|++++|.++...+     ..+..+++|+.|++++|++++..|..+..+++|++|+|++|+|+ .||.+.
T Consensus       122 ~l~~l~~L~l~~n~l~~l~~-----~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~  191 (266)
T d1p9ag_         122 GLGELQELYLKGNELKTLPP-----GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGF  191 (266)
T ss_dssp             TCTTCCEEECTTSCCCCCCT-----TTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTT
T ss_pred             cccccccccccccccceecc-----ccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhH
Confidence            34455555555555553222     55678899999999999999877788999999999999999999 999753

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.83  E-value=2.9e-09  Score=85.15  Aligned_cols=63  Identities=25%  Similarity=0.351  Sum_probs=30.6

Q ss_pred             CcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccc
Q 036330          107 FLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEG  178 (187)
Q Consensus       107 l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G  178 (187)
                      +..+++++.|++++|++++. +      .+..+++|++|++++|++++ +| .++++++|++|++++|++++
T Consensus       303 ~~~~~~l~~L~ls~n~l~~l-~------~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~  365 (384)
T d2omza2         303 ISNLKNLTYLTLYFNNISDI-S------PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISD  365 (384)
T ss_dssp             GGGCTTCSEEECCSSCCSCC-G------GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCB
T ss_pred             cchhcccCeEECCCCCCCCC-c------ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCC
Confidence            33444555555555555432 2      24445555555555555542 33 34555555555555555553

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.74  E-value=1.4e-08  Score=81.10  Aligned_cols=83  Identities=19%  Similarity=0.252  Sum_probs=69.9

Q ss_pred             CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhc
Q 036330           83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT  162 (187)
Q Consensus        83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~  162 (187)
                      ..+++|++++++++.+      +.+..+++|++|++++|++++ +|      .++++++|++|++++|++++ +++ +++
T Consensus        44 ~~l~~L~l~~~~I~~l------~gl~~L~nL~~L~Ls~N~l~~-l~------~l~~L~~L~~L~L~~n~i~~-i~~-l~~  108 (384)
T d2omza2          44 DQVTTLQADRLGIKSI------DGVEYLNNLTQINFSNNQLTD-IT------PLKNLTKLVDILMNNNQIAD-ITP-LAN  108 (384)
T ss_dssp             TTCCEEECCSSCCCCC------TTGGGCTTCCEEECCSSCCCC-CG------GGTTCTTCCEEECCSSCCCC-CGG-GTT
T ss_pred             CCCCEEECCCCCCCCc------cccccCCCCCEEeCcCCcCCC-Cc------cccCCccccccccccccccc-ccc-ccc
Confidence            4689999999998432      236788999999999999985 44      48999999999999999996 443 889


Q ss_pred             CCCCCEEEcccccccccC
Q 036330          163 IISLTNLSLGYCGIEGFI  180 (187)
Q Consensus       163 l~~L~~L~Ls~N~l~G~i  180 (187)
                      +++|+.|++++|.+++..
T Consensus       109 l~~L~~L~~~~~~~~~~~  126 (384)
T d2omza2         109 LTNLTGLTLFNNQITDID  126 (384)
T ss_dssp             CTTCCEEECCSSCCCCCG
T ss_pred             cccccccccccccccccc
Confidence            999999999999988643

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=1.1e-08  Score=77.36  Aligned_cols=104  Identities=22%  Similarity=0.312  Sum_probs=79.6

Q ss_pred             CCCcceeecCC--------CCCCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCC
Q 036330           70 CRWEQVKCVNA--------TTRRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKW  141 (187)
Q Consensus        70 C~w~gv~C~~~--------~~~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~  141 (187)
                      |....|.|...        ....+++|++++|.++    .++...|.++++|++|++++|.+...+|.    ..+..++.
T Consensus         8 C~~~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~----~l~~~~f~~l~~L~~L~ls~n~~~~~i~~----~~f~~l~~   79 (242)
T d1xwdc1           8 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLR----VIQKGAFSGFGDLEKIEISQNDVLEVIEA----DVFSNLPK   79 (242)
T ss_dssp             ECSSEEEEESCSCSSCCSCSCSCCSEEEEESCCCC----EECTTTTTTCTTCCEEEEESCTTCCEECS----SSEESCTT
T ss_pred             CcCCEEEEeCCCCCCcCCCCCCCCCEEECcCCcCC----ccChhHhhccchhhhhhhccccccceeec----cccccccc
Confidence            56677788631        1136899999999984    23335588899999999999999877762    46788899


Q ss_pred             CCEEEccC-CCCCCCChHHhhcCCCCCEEEcccccccccCCC
Q 036330          142 LKILNLYS-NNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPN  182 (187)
Q Consensus       142 L~~L~Ls~-N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~  182 (187)
                      ++++++.. |++....|..+.++++|+++++++|.+. .+|.
T Consensus        80 l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~-~~~~  120 (242)
T d1xwdc1          80 LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPD  120 (242)
T ss_dssp             CCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCC-SCCC
T ss_pred             cccccccccccccccccccccccccccccccchhhhc-cccc
Confidence            99998764 6777667777889999999999999887 3443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.72  E-value=1.8e-08  Score=78.80  Aligned_cols=97  Identities=20%  Similarity=0.199  Sum_probs=59.9

Q ss_pred             CCCcceeecCC--------CCCCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCC
Q 036330           70 CRWEQVKCVNA--------TTRRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKW  141 (187)
Q Consensus        70 C~w~gv~C~~~--------~~~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~  141 (187)
                      |.|++|.|...        ....++.|+|++|+++    .++...|..+++|++|++++|.+....|     ..|..+++
T Consensus        10 c~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~----~l~~~~f~~l~~L~~L~l~~n~~~~i~~-----~~f~~l~~   80 (305)
T d1xkua_          10 CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKIT----EIKDGDFKNLKNLHTLILINNKISKISP-----GAFAPLVK   80 (305)
T ss_dssp             EETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCC----CBCTTTTTTCTTCCEEECCSSCCCCBCT-----TTTTTCTT
T ss_pred             ecCCEEEecCCCCCccCCCCCCCCCEEECcCCcCC----CcChhHhhccccccccccccccccccch-----hhhhCCCc
Confidence            67888888641        1134666777777663    2222345666777777777777765444     56667777


Q ss_pred             CCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccc
Q 036330          142 LKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEG  178 (187)
Q Consensus       142 L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G  178 (187)
                      |++|++++|+++ .+|..  ....++.|++..|.+.+
T Consensus        81 L~~L~l~~n~l~-~l~~~--~~~~l~~L~~~~n~l~~  114 (305)
T d1xkua_          81 LERLYLSKNQLK-ELPEK--MPKTLQELRVHENEITK  114 (305)
T ss_dssp             CCEEECCSSCCS-BCCSS--CCTTCCEEECCSSCCCB
T ss_pred             cCEecccCCccC-cCccc--hhhhhhhhhccccchhh
Confidence            777777777766 45543  23466677777776663

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.69  E-value=3e-08  Score=73.27  Aligned_cols=80  Identities=16%  Similarity=0.251  Sum_probs=56.9

Q ss_pred             CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhc
Q 036330           83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT  162 (187)
Q Consensus        83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~  162 (187)
                      .+++.|++++|.+++..      .+..+++|++|++++|.+. .++      .+..+++|+.|++++|.+...  +.+..
T Consensus        62 ~nL~~L~Ls~N~l~~~~------~l~~l~~L~~L~l~~n~~~-~~~------~l~~l~~L~~L~l~~~~~~~~--~~~~~  126 (199)
T d2omxa2          62 NNLTQINFSNNQLTDIT------PLKNLTKLVDILMNNNQIA-DIT------PLANLTNLTGLTLFNNQITDI--DPLKN  126 (199)
T ss_dssp             TTCCEEECCSSCCCCCG------GGTTCTTCCEEECCSSCCC-CCG------GGTTCTTCSEEECCSSCCCCC--GGGTT
T ss_pred             CCcCcCccccccccCcc------cccCCcccccccccccccc-ccc------ccccccccccccccccccccc--cccch
Confidence            35777777777773221      1566777778888777765 333      477888888888888887752  34778


Q ss_pred             CCCCCEEEccccccc
Q 036330          163 IISLTNLSLGYCGIE  177 (187)
Q Consensus       163 l~~L~~L~Ls~N~l~  177 (187)
                      +++|+.|++++|++.
T Consensus       127 l~~L~~L~l~~n~l~  141 (199)
T d2omxa2         127 LTNLNRLELSSNTIS  141 (199)
T ss_dssp             CTTCSEEECCSSCCC
T ss_pred             hhhhHHhhhhhhhhc
Confidence            888889998888887

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.69  E-value=2.9e-08  Score=74.05  Aligned_cols=80  Identities=29%  Similarity=0.298  Sum_probs=50.6

Q ss_pred             CEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcC
Q 036330           84 RVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTI  163 (187)
Q Consensus        84 ~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l  163 (187)
                      ++++|++++|.+++..      .+..+++|++|++++|++++ +|      .+..+++|+.|++++|.+. .++ .+..+
T Consensus        69 ~L~~L~L~~n~i~~l~------~~~~l~~L~~L~l~~n~i~~-l~------~l~~l~~L~~L~l~~~~~~-~~~-~l~~l  133 (210)
T d1h6ta2          69 NVTKLFLNGNKLTDIK------PLANLKNLGWLFLDENKVKD-LS------SLKDLKKLKSLSLEHNGIS-DIN-GLVHL  133 (210)
T ss_dssp             TCCEEECCSSCCCCCG------GGTTCTTCCEEECCSSCCCC-GG------GGTTCTTCCEEECTTSCCC-CCG-GGGGC
T ss_pred             CCCEEeCCCccccCcc------ccccCccccccccccccccc-cc------ccccccccccccccccccc-ccc-ccccc
Confidence            5667777777663221      14556677777777777663 43      4666777777777777765 233 46667


Q ss_pred             CCCCEEEcccccccc
Q 036330          164 ISLTNLSLGYCGIEG  178 (187)
Q Consensus       164 ~~L~~L~Ls~N~l~G  178 (187)
                      ++++.+++++|.+++
T Consensus       134 ~~l~~l~~~~n~l~~  148 (210)
T d1h6ta2         134 PQLESLYLGNNKITD  148 (210)
T ss_dssp             TTCCEEECCSSCCCC
T ss_pred             ccccccccccccccc
Confidence            777777777777663

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.60  E-value=9.5e-08  Score=71.65  Aligned_cols=65  Identities=17%  Similarity=0.284  Sum_probs=52.3

Q ss_pred             CcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccccCC
Q 036330          107 FLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIP  181 (187)
Q Consensus       107 l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP  181 (187)
                      +...++|+.|++++|.+.+.       ..++++++|+.|+|++|++++ +|. ++++++|++|+|++|+++ .||
T Consensus       147 ~~~~~~L~~L~l~~n~~~~~-------~~l~~l~~L~~L~Ls~n~l~~-l~~-l~~l~~L~~L~Ls~N~lt-~i~  211 (227)
T d1h6ua2         147 LAGLTNLQYLSIGNAQVSDL-------TPLANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQIS-DVS  211 (227)
T ss_dssp             GGGCTTCCEEECCSSCCCCC-------GGGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCC-BCG
T ss_pred             hccccccccccccccccccc-------hhhcccccceecccCCCccCC-Chh-hcCCCCCCEEECcCCcCC-CCc
Confidence            45667888999998887643       247888999999999999985 554 888999999999999998 454

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.57  E-value=1.2e-07  Score=69.94  Aligned_cols=65  Identities=26%  Similarity=0.363  Sum_probs=52.1

Q ss_pred             CcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccccCC
Q 036330          107 FLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIP  181 (187)
Q Consensus       107 l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP  181 (187)
                      +..+++|+.|++++|.+.. +      +.+..+++|++|++++|++++ ++ .++++++|++|++++|+++ .||
T Consensus       124 ~~~l~~L~~L~l~~n~l~~-~------~~l~~~~~L~~L~l~~n~l~~-l~-~l~~l~~L~~L~ls~N~i~-~i~  188 (199)
T d2omxa2         124 LKNLTNLNRLELSSNTISD-I------SALSGLTSLQQLNFSSNQVTD-LK-PLANLTTLERLDISSNKVS-DIS  188 (199)
T ss_dssp             GTTCTTCSEEECCSSCCCC-C------GGGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-CCG
T ss_pred             cchhhhhHHhhhhhhhhcc-c------ccccccccccccccccccccC-Cc-cccCCCCCCEEECCCCCCC-CCc
Confidence            4567778888888887763 3      358889999999999999986 44 3889999999999999998 455

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.56  E-value=7e-08  Score=72.39  Aligned_cols=76  Identities=18%  Similarity=0.246  Sum_probs=62.1

Q ss_pred             CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhc
Q 036330           83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT  162 (187)
Q Consensus        83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~  162 (187)
                      .+++.++++++.+...      ..+.++++|+.|++++|.+++ ++      .+..+++|++|+|++|++++ +|+ +.+
T Consensus       151 ~~L~~L~l~~n~~~~~------~~l~~l~~L~~L~Ls~n~l~~-l~------~l~~l~~L~~L~Ls~N~lt~-i~~-l~~  215 (227)
T d1h6ua2         151 TNLQYLSIGNAQVSDL------TPLANLSKLTTLKADDNKISD-IS------PLASLPNLIEVHLKNNQISD-VSP-LAN  215 (227)
T ss_dssp             TTCCEEECCSSCCCCC------GGGTTCTTCCEEECCSSCCCC-CG------GGGGCTTCCEEECTTSCCCB-CGG-GTT
T ss_pred             cccccccccccccccc------hhhcccccceecccCCCccCC-Ch------hhcCCCCCCEEECcCCcCCC-Ccc-ccc
Confidence            4578888888877311      226788999999999999985 55      48899999999999999995 654 899


Q ss_pred             CCCCCEEEccc
Q 036330          163 IISLTNLSLGY  173 (187)
Q Consensus       163 l~~L~~L~Ls~  173 (187)
                      +++|++|++++
T Consensus       216 l~~L~~L~lsn  226 (227)
T d1h6ua2         216 TSNLFIVTLTN  226 (227)
T ss_dssp             CTTCCEEEEEE
T ss_pred             CCCCCEEEeeC
Confidence            99999999974

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.51  E-value=1.4e-09  Score=81.07  Aligned_cols=91  Identities=21%  Similarity=0.195  Sum_probs=62.5

Q ss_pred             CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCc-----------------cccccCCCCCCCEE
Q 036330           83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEG-----------------MYLSIGSLKWLKIL  145 (187)
Q Consensus        83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~-----------------~~~~~~~l~~L~~L  145 (187)
                      .+++.|+|++|.++.    +  +.+..+++|+.|++++|.++ .+|...                 .+..+..+++|++|
T Consensus        48 ~~L~~L~Ls~n~I~~----i--~~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l~~~~~l~~L~~L  120 (198)
T d1m9la_          48 KACKHLALSTNNIEK----I--SSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVL  120 (198)
T ss_dssp             TTCCEEECSEEEESC----C--CCHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCHHHHHHHHHSSEE
T ss_pred             cccceeECcccCCCC----c--ccccCCccccChhhcccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            468889999888832    2  22667788888888888876 444210                 01235566778888


Q ss_pred             EccCCCCCCCCh--HHhhcCCCCCEEEcccccccccCC
Q 036330          146 NLYSNNVNNSLL--PSLTTIISLTNLSLGYCGIEGFIP  181 (187)
Q Consensus       146 ~Ls~N~l~G~iP--~~l~~l~~L~~L~Ls~N~l~G~iP  181 (187)
                      ++++|+++. ++  ..+..+++|+.|++++|.++...+
T Consensus       121 ~L~~N~i~~-~~~~~~l~~l~~L~~L~L~~N~l~~~~~  157 (198)
T d1m9la_         121 YMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLYNDYK  157 (198)
T ss_dssp             EESEEECCC-HHHHHHHTTTTTCSEEEECSSHHHHHHC
T ss_pred             ccccchhcc-ccccccccCCCccceeecCCCccccCcc
Confidence            888888874 44  357788888888888888775444

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.46  E-value=2.3e-07  Score=68.98  Aligned_cols=91  Identities=23%  Similarity=0.245  Sum_probs=63.2

Q ss_pred             CCCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCC----------------ccccccCCCCCCCEE
Q 036330           82 TRRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKE----------------GMYLSIGSLKWLKIL  145 (187)
Q Consensus        82 ~~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~----------------~~~~~~~~l~~L~~L  145 (187)
                      ..+++.|++++|.++...      .+..+++|+.|++++|.+.. ++..                ..+..+..+++|+++
T Consensus        89 l~~L~~L~l~~n~i~~l~------~l~~l~~L~~L~l~~~~~~~-~~~l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l  161 (210)
T d1h6ta2          89 LKNLGWLFLDENKVKDLS------SLKDLKKLKSLSLEHNGISD-INGLVHLPQLESLYLGNNKITDITVLSRLTKLDTL  161 (210)
T ss_dssp             CTTCCEEECCSSCCCCGG------GGTTCTTCCEEECTTSCCCC-CGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEE
T ss_pred             Cccccccccccccccccc------cccccccccccccccccccc-ccccccccccccccccccccccccccccccccccc
Confidence            357889999999884221      25556666666666665542 1100                011346678899999


Q ss_pred             EccCCCCCCCChHHhhcCCCCCEEEcccccccccCCC
Q 036330          146 NLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPN  182 (187)
Q Consensus       146 ~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~  182 (187)
                      ++++|++++ +++ +.++++|+.|+|++|+++ .||.
T Consensus       162 ~l~~n~l~~-i~~-l~~l~~L~~L~Ls~N~i~-~l~~  195 (210)
T d1h6ta2         162 SLEDNQISD-IVP-LAGLTKLQNLYLSKNHIS-DLRA  195 (210)
T ss_dssp             ECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC-BCGG
T ss_pred             ccccccccc-ccc-ccCCCCCCEEECCCCCCC-CChh
Confidence            999999986 543 889999999999999998 5663

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.29  E-value=8.7e-09  Score=76.60  Aligned_cols=59  Identities=20%  Similarity=0.166  Sum_probs=41.7

Q ss_pred             cCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChH----------HhhcCCCCCEEE
Q 036330          108 LPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLP----------SLTTIISLTNLS  170 (187)
Q Consensus       108 ~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~----------~l~~l~~L~~L~  170 (187)
                      ..+++|+.|++++|.++.. +.   ...+..+++|++|++++|.+....+.          .+..+++|+.||
T Consensus       112 ~~l~~L~~L~L~~N~i~~~-~~---~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         112 EKLVNLRVLYMSNNKITNW-GE---IDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHHSSEEEESEEECCCH-HH---HHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccccccccccccchhccc-cc---cccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            3456777888888877632 20   03578999999999999987543221          267899999987

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.25  E-value=1.8e-06  Score=67.36  Aligned_cols=77  Identities=18%  Similarity=0.191  Sum_probs=47.6

Q ss_pred             CEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcC
Q 036330           84 RVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTI  163 (187)
Q Consensus        84 ~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l  163 (187)
                      +++.|+|++|+++.    ++ .   .+.+|+.|++++|.++ .++      .+  .+.|++|++++|.+. .+|. ++.+
T Consensus        59 ~L~~L~Ls~N~l~~----lp-~---~~~~L~~L~l~~n~l~-~l~------~l--p~~L~~L~L~~n~l~-~lp~-~~~l  119 (353)
T d1jl5a_          59 HLESLVASCNSLTE----LP-E---LPQSLKSLLVDNNNLK-ALS------DL--PPLLEYLGVSNNQLE-KLPE-LQNS  119 (353)
T ss_dssp             TCSEEECCSSCCSS----CC-C---CCTTCCEEECCSSCCS-CCC------SC--CTTCCEEECCSSCCS-SCCC-CTTC
T ss_pred             CCCEEECCCCCCcc----cc-c---chhhhhhhhhhhcccc-hhh------hh--ccccccccccccccc-cccc-hhhh
Confidence            45566666666521    11 1   1245666666666554 233      11  145888888888887 5664 5778


Q ss_pred             CCCCEEEccccccccc
Q 036330          164 ISLTNLSLGYCGIEGF  179 (187)
Q Consensus       164 ~~L~~L~Ls~N~l~G~  179 (187)
                      ++|+.|++++|.+++.
T Consensus       120 ~~L~~L~l~~~~~~~~  135 (353)
T d1jl5a_         120 SFLKIIDVDNNSLKKL  135 (353)
T ss_dssp             TTCCEEECCSSCCSCC
T ss_pred             ccceeecccccccccc
Confidence            8888888888887743

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=5e-07  Score=64.63  Aligned_cols=81  Identities=20%  Similarity=0.102  Sum_probs=47.5

Q ss_pred             CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChH----
Q 036330           83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLP----  158 (187)
Q Consensus        83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~----  158 (187)
                      ..++.|+|++|.++...+ + ...+..+++|+.|+|++|.++. ++.    -......+|+.|++++|.++.....    
T Consensus        65 ~~L~~L~Ls~N~i~~l~~-~-~~~~~~l~~L~~L~Ls~N~i~~-l~~----l~~l~~~~L~~L~L~~Npl~~~~~~~~~y  137 (162)
T d1koha1          65 PELLSLNLSNNRLYRLDD-M-SSIVQKAPNLKILNLSGNELKS-ERE----LDKIKGLKLEELWLDGNSLSDTFRDQSTY  137 (162)
T ss_dssp             TTCCCCCCCSSCCCCCSG-G-GTHHHHSTTCCCCCCTTSCCCC-GGG----HHHHTTCCCSSCCCTTSTTSSSSSSHHHH
T ss_pred             CCCCEeeCCCccccCCch-h-HHHHhhCCcccccccccCcccc-chh----hhhhhccccceeecCCCCcCcCcccchhH
Confidence            357777788877743221 0 1224456777788888887763 330    1222334577777888877654432    


Q ss_pred             ---HhhcCCCCCEEE
Q 036330          159 ---SLTTIISLTNLS  170 (187)
Q Consensus       159 ---~l~~l~~L~~L~  170 (187)
                         .+..+++|+.||
T Consensus       138 ~~~i~~~~P~L~~LD  152 (162)
T d1koha1         138 ISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHTTSTTCCEET
T ss_pred             HHHHHHHCCCCCEEC
Confidence               245677777765

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.05  E-value=3.4e-06  Score=65.66  Aligned_cols=59  Identities=20%  Similarity=0.176  Sum_probs=49.7

Q ss_pred             CCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccccCCC
Q 036330          110 FQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPN  182 (187)
Q Consensus       110 l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~  182 (187)
                      +++|++|++++|.++ .+|     ..   +++|+.|+|++|+++ .+|+   .+++|++|++++|+++ .+|.
T Consensus       283 ~~~L~~L~Ls~N~l~-~lp-----~~---~~~L~~L~L~~N~L~-~l~~---~~~~L~~L~L~~N~L~-~lp~  341 (353)
T d1jl5a_         283 PPSLEELNVSNNKLI-ELP-----AL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLR-EFPD  341 (353)
T ss_dssp             CTTCCEEECCSSCCS-CCC-----CC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-SCCC
T ss_pred             CCCCCEEECCCCccC-ccc-----cc---cCCCCEEECCCCcCC-cccc---ccCCCCEEECcCCcCC-CCCc
Confidence            578999999999998 677     43   578999999999998 6875   3568999999999998 7774

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=8.1e-07  Score=63.47  Aligned_cols=68  Identities=26%  Similarity=0.237  Sum_probs=53.4

Q ss_pred             cCCCCCcEEEccCCccccc--cCCCccccccCCCCCCCEEEccCCCCCCCChH-HhhcCCCCCEEEcccccccccCC
Q 036330          108 LPFQELESLDLSYNSFYGV--YEKEGMYLSIGSLKWLKILNLYSNNVNNSLLP-SLTTIISLTNLSLGYCGIEGFIP  181 (187)
Q Consensus       108 ~~l~~L~~L~Ls~N~l~g~--ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~-~l~~l~~L~~L~Ls~N~l~G~iP  181 (187)
                      ..++.|++|+|++|+++..  ++     ..+..+++|+.|||++|+++. +++ ..-...+|+.|++++|.++....
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~-----~~~~~l~~L~~L~Ls~N~i~~-l~~l~~l~~~~L~~L~L~~Npl~~~~~  132 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMS-----SIVQKAPNLKILNLSGNELKS-ERELDKIKGLKLEELWLDGNSLSDTFR  132 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGG-----THHHHSTTCCCCCCTTSCCCC-GGGHHHHTTCCCSSCCCTTSTTSSSSS
T ss_pred             HhCCCCCEeeCCCccccCCchhH-----HHHhhCCcccccccccCcccc-chhhhhhhccccceeecCCCCcCcCcc
Confidence            4578999999999999853  23     456779999999999999994 544 33445679999999999986543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=4.2e-05  Score=56.85  Aligned_cols=65  Identities=20%  Similarity=0.055  Sum_probs=46.3

Q ss_pred             CCcEEEccCCccccccCCCccccccCCCCCCCEE-EccCCCCCCCChH-HhhcCCCCCEEEcccccccccCCCCC
Q 036330          112 ELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKIL-NLYSNNVNNSLLP-SLTTIISLTNLSLGYCGIEGFIPNQG  184 (187)
Q Consensus       112 ~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L-~Ls~N~l~G~iP~-~l~~l~~L~~L~Ls~N~l~G~iP~~~  184 (187)
                      .++.|++++|.++ .++     .......+++.+ ++++|+++ .+|. .|.++++|++|++++|+++ .+|...
T Consensus       154 ~l~~L~l~~n~l~-~i~-----~~~~~~~~l~~~~~l~~n~l~-~l~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~  220 (242)
T d1xwdc1         154 ESVILWLNKNGIQ-EIH-----NCAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH-SLPSYG  220 (242)
T ss_dssp             SCEEEECCSSCCC-EEC-----TTTTTTCCEEEEECTTCTTCC-CCCTTTTTTSCCCSEEECTTSCCC-CCCSSS
T ss_pred             cceeeeccccccc-ccc-----cccccchhhhccccccccccc-cccHHHhcCCCCCCEEECCCCcCC-ccCHHH
Confidence            6777888888887 344     344445555554 56777787 4654 5788999999999999998 777653

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=2.6e-06  Score=68.44  Aligned_cols=65  Identities=25%  Similarity=0.223  Sum_probs=44.3

Q ss_pred             CCCCCcEEEccCCccccc----cCCCccccccC-CCCCCCEEEccCCCCCC----CChHHhhcCCCCCEEEcccccccc
Q 036330          109 PFQELESLDLSYNSFYGV----YEKEGMYLSIG-SLKWLKILNLYSNNVNN----SLLPSLTTIISLTNLSLGYCGIEG  178 (187)
Q Consensus       109 ~l~~L~~L~Ls~N~l~g~----ip~~~~~~~~~-~l~~L~~L~Ls~N~l~G----~iP~~l~~l~~L~~L~Ls~N~l~G  178 (187)
                      ..++|++|+|++|.++..    ++     ..+. ..+.|++|+|++|+++.    .+++.+..+++|++|+|++|+++.
T Consensus       338 ~~~~L~~L~Ls~N~i~~~g~~~l~-----~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~  411 (460)
T d1z7xw1         338 QNRFLLELQISNNRLEDAGVRELC-----QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  411 (460)
T ss_dssp             HCSSCCEEECCSSBCHHHHHHHHH-----HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             cccchhhhheeeecccCcccchhh-----hhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCH
Confidence            345788888888887642    22     2332 35668888888888864    245556677888888888888763

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=2.6e-06  Score=68.51  Aligned_cols=89  Identities=19%  Similarity=0.141  Sum_probs=58.6

Q ss_pred             CEEEEEcCCCCCCCCCC-CCCCccCcCCCCCcEEEccCCccccc----cCCCccccccC-CCCCCCEEEccCCCCCCC--
Q 036330           84 RVKELSLDGITLGANSG-FLNLSMFLPFQELESLDLSYNSFYGV----YEKEGMYLSIG-SLKWLKILNLYSNNVNNS--  155 (187)
Q Consensus        84 ~v~~L~L~~~~l~~~~~-~~~~~~l~~l~~L~~L~Ls~N~l~g~----ip~~~~~~~~~-~l~~L~~L~Ls~N~l~G~--  155 (187)
                      +++.|+|++++++..+- .+ ...+..+++|+.|||++|.++..    +.     ..+. ...+|++|+|++|+++..  
T Consensus        28 ~l~~L~L~~~~i~~~~~~~l-~~~L~~~~~L~~LdLs~N~i~~~~~~~l~-----~~l~~~~~~L~~L~L~~n~it~~~~  101 (460)
T d1z7xw1          28 QCQVVRLDDCGLTEARCKDI-SSALRVNPALAELNLRSNELGDVGVHCVL-----QGLQTPSCKIQKLSLQNCCLTGAGC  101 (460)
T ss_dssp             TCSEEEEESSCCCHHHHHHH-HHHHHTCTTCCEEECTTCCCHHHHHHHHH-----HTTCSTTCCCCEEECTTSCCBGGGH
T ss_pred             CCCEEEeCCCCCCHHHHHHH-HHHHhcCCCCCEEECcCCcCChHHHHHHH-----HHHhcCCCCCCEEECCCCCcccccc
Confidence            34567777776621000 00 01245678899999999988531    11     2222 235799999999998753  


Q ss_pred             --ChHHhhcCCCCCEEEcccccccc
Q 036330          156 --LLPSLTTIISLTNLSLGYCGIEG  178 (187)
Q Consensus       156 --iP~~l~~l~~L~~L~Ls~N~l~G  178 (187)
                        ++..+..+++|++|++++|.++.
T Consensus       102 ~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1         102 GVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             HHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             ccccchhhccccccccccccccchh
Confidence              56677788999999999998763

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.52  E-value=9.8e-06  Score=63.83  Aligned_cols=38  Identities=21%  Similarity=0.148  Sum_probs=18.0

Q ss_pred             CCCCEEEccCCCCCCC----ChHHhh-cCCCCCEEEccccccc
Q 036330          140 KWLKILNLYSNNVNNS----LLPSLT-TIISLTNLSLGYCGIE  177 (187)
Q Consensus       140 ~~L~~L~Ls~N~l~G~----iP~~l~-~l~~L~~L~Ls~N~l~  177 (187)
                      +.|++|++++|+++..    +...+. ++++|+.|+|++|+|.
T Consensus       273 ~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         273 IGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             CCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             CCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            3455555555555421    222221 3455555555555553

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=4.4e-05  Score=58.78  Aligned_cols=87  Identities=18%  Similarity=0.202  Sum_probs=64.5

Q ss_pred             CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCC-CCCC-CChHHh
Q 036330           83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSN-NVNN-SLLPSL  160 (187)
Q Consensus        83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N-~l~G-~iP~~l  160 (187)
                      .+++.+|++++.++   .......+..+++|++|+++++.+++..+     ..++.+++|++|+++++ .++. .+..-.
T Consensus        46 ~~L~~LdLs~~~i~---~~~l~~l~~~c~~L~~L~L~~~~l~~~~~-----~~l~~~~~L~~L~Ls~c~~itd~~l~~l~  117 (284)
T d2astb2          46 FRVQHMDLSNSVIE---VSTLHGILSQCSKLQNLSLEGLRLSDPIV-----NTLAKNSNLVRLNLSGCSGFSEFALQTLL  117 (284)
T ss_dssp             BCCCEEECTTCEEC---HHHHHHHHTTBCCCSEEECTTCBCCHHHH-----HHHTTCTTCSEEECTTCBSCCHHHHHHHH
T ss_pred             CCCCEEECCCCccC---HHHHHHHHHhCCCcccccccccCCCcHHH-----HHHhcCCCCcCccccccccccccccchhh
Confidence            46889999988762   11111235678999999999999988777     78889999999999984 5653 233335


Q ss_pred             hcCCCCCEEEcccc-ccc
Q 036330          161 TTIISLTNLSLGYC-GIE  177 (187)
Q Consensus       161 ~~l~~L~~L~Ls~N-~l~  177 (187)
                      ..+++|++|+++++ .++
T Consensus       118 ~~~~~L~~L~ls~c~~~~  135 (284)
T d2astb2         118 SSCSRLDELNLSWCFDFT  135 (284)
T ss_dssp             HHCTTCCEEECCCCTTCC
T ss_pred             HHHHhccccccccccccc
Confidence            67899999999874 443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=8.3e-05  Score=57.13  Aligned_cols=61  Identities=23%  Similarity=0.145  Sum_probs=45.6

Q ss_pred             CCCCCcEEEccCC-ccccccCCCccccccCCCCCCCEEEccC-CCCCCCChHHhhcCCCCCEEEcccc
Q 036330          109 PFQELESLDLSYN-SFYGVYEKEGMYLSIGSLKWLKILNLYS-NNVNNSLLPSLTTIISLTNLSLGYC  174 (187)
Q Consensus       109 ~l~~L~~L~Ls~N-~l~g~ip~~~~~~~~~~l~~L~~L~Ls~-N~l~G~iP~~l~~l~~L~~L~Ls~N  174 (187)
                      .+++|++|+++++ .+++...     ..+.++++|++|++++ +.+++.-...++++++|+.|+++++
T Consensus       173 ~~~~L~~L~L~~~~~itd~~~-----~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         173 RCPNLVHLDLSDSVMLKNDCF-----QEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             HCTTCSEEECTTCTTCCGGGG-----GGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ccccccccccccccCCCchhh-----hhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            4678888888875 4666555     6777888888888888 4677666667788888888888765

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.39  E-value=1.5e-05  Score=62.67  Aligned_cols=90  Identities=23%  Similarity=0.218  Sum_probs=55.9

Q ss_pred             CEEEEEcCCCCCCCCCC-CCCCccCcCCCCCcEEEccCCccccc----cCCCccccccCCCCCCCEEEccCCCCCCCChH
Q 036330           84 RVKELSLDGITLGANSG-FLNLSMFLPFQELESLDLSYNSFYGV----YEKEGMYLSIGSLKWLKILNLYSNNVNNSLLP  158 (187)
Q Consensus        84 ~v~~L~L~~~~l~~~~~-~~~~~~l~~l~~L~~L~Ls~N~l~g~----ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~  158 (187)
                      .++.++|+.+.++..+. ..-...+..+++|+.|++++|.++..    +.     ..+..+++|++|+|++|.+++.-..
T Consensus       187 ~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~-----~~l~~~~~L~~L~Ls~n~i~~~g~~  261 (344)
T d2ca6a1         187 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA-----IALKSWPNLRELGLNDCLLSARGAA  261 (344)
T ss_dssp             TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH-----HHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred             hhcccccccccccccccccchhhhhcchhhhccccccccccccccccccc-----ccccccccchhhhhhcCccCchhhH
Confidence            46777777777631100 00112255677888888888877532    22     3456778888888888888754222


Q ss_pred             ----Hhhc--CCCCCEEEcccccccc
Q 036330          159 ----SLTT--IISLTNLSLGYCGIEG  178 (187)
Q Consensus       159 ----~l~~--l~~L~~L~Ls~N~l~G  178 (187)
                          .+..  .+.|++|++++|+++.
T Consensus       262 ~l~~~l~~~~~~~L~~L~ls~N~i~~  287 (344)
T d2ca6a1         262 AVVDAFSKLENIGLQTLRLQYNEIEL  287 (344)
T ss_dssp             HHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             HHHHHhhhccCCCCCEEECCCCcCCh
Confidence                2333  3568888888888763

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.02  E-value=4.5e-05  Score=54.26  Aligned_cols=93  Identities=9%  Similarity=0.087  Sum_probs=54.7

Q ss_pred             CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCC-------
Q 036330           83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNS-------  155 (187)
Q Consensus        83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~-------  155 (187)
                      ..+++|+|+++.+...+...-...+...+.|+.|+|++|.++..--. ..-..+...++|++|++++|++...       
T Consensus        44 ~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~-~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~  122 (167)
T d1pgva_          44 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA-RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMD  122 (167)
T ss_dssp             SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH-HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHH
T ss_pred             CccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHH-HHHHHHHhCCcCCEEECCCCcCCCccHHHHHH
Confidence            46788888888772111111111233457788888888887643110 0003456667788888888765421       


Q ss_pred             ChHHhhcCCCCCEEEcccccc
Q 036330          156 LLPSLTTIISLTNLSLGYCGI  176 (187)
Q Consensus       156 iP~~l~~l~~L~~L~Ls~N~l  176 (187)
                      +...+...++|+.|+++++..
T Consensus       123 l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_         123 MMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHhCCCccEeeCcCCCc
Confidence            344455667888888876654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.94  E-value=0.00012  Score=51.95  Aligned_cols=94  Identities=16%  Similarity=0.164  Sum_probs=61.2

Q ss_pred             CCEEEEEcCCC-CCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCC----Ch
Q 036330           83 RRVKELSLDGI-TLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNS----LL  157 (187)
Q Consensus        83 ~~v~~L~L~~~-~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~----iP  157 (187)
                      ..+++|+|+++ .++..+-..-...+...+.|+.|+|++|.+...-.. .....+...+.|++|+|++|.++..    +-
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~-~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~   93 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEAR-GLIELIETSPSLRVLNVESNFLTPELLARLL   93 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHT-THHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHH-HHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence            57999999974 452100000011255668899999999998743220 0002345568899999999999753    22


Q ss_pred             HHhhcCCCCCEEEccccccc
Q 036330          158 PSLTTIISLTNLSLGYCGIE  177 (187)
Q Consensus       158 ~~l~~l~~L~~L~Ls~N~l~  177 (187)
                      ..+...++|++|++++|.+.
T Consensus        94 ~aL~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          94 RSTLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             HHTTTTCCCSEEECCCCSSC
T ss_pred             HHHHhCCcCCEEECCCCcCC
Confidence            34556688999999988654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.48  E-value=0.002  Score=45.04  Aligned_cols=93  Identities=19%  Similarity=0.150  Sum_probs=56.8

Q ss_pred             CCEEEEEcCCCCCCCCCC-CCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEc--cCCCCCC----C
Q 036330           83 RRVKELSLDGITLGANSG-FLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNL--YSNNVNN----S  155 (187)
Q Consensus        83 ~~v~~L~L~~~~l~~~~~-~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~L--s~N~l~G----~  155 (187)
                      .++++|+++++.++..+. .+ ...+...+.++.+++++|.+....-. .....+...++|+.++|  +.|.+..    .
T Consensus        46 ~~L~~L~Ls~n~l~~~~~~~L-~~~l~~~~~l~~l~l~~~~~~~~g~~-~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~  123 (166)
T d1io0a_          46 TYVKKFSIVGTRSNDPVAFAL-AEMLKVNNTLKSLNVESNFISGSGIL-ALVEALQSNTSLIELRIDNQSQPLGNNVEME  123 (166)
T ss_dssp             CSCCEEECTTSCCCHHHHHHH-HHHHHHCSSCCEEECCSSCCCHHHHH-HHHHGGGGCSSCCEEECCCCSSCCCHHHHHH
T ss_pred             CccCeeeccCCcccHHHHHHH-HHHHhhcccchhhhhccccccchhHH-HHHHHHHhCccccEEeeccCCCcCcHHHHHH
Confidence            568888998888731110 01 01234567888899988887643110 00034566778887555  5666643    3


Q ss_pred             ChHHhhcCCCCCEEEccccccc
Q 036330          156 LLPSLTTIISLTNLSLGYCGIE  177 (187)
Q Consensus       156 iP~~l~~l~~L~~L~Ls~N~l~  177 (187)
                      +-+.+...+.|+.|+++.|...
T Consensus       124 La~~L~~n~~L~~L~l~~~~~~  145 (166)
T d1io0a_         124 IANMLEKNTTLLKFGYHFTQQG  145 (166)
T ss_dssp             HHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHhCCCcCEEeCcCCCCc
Confidence            4455667889999998877643

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.34  E-value=0.015  Score=40.26  Aligned_cols=95  Identities=15%  Similarity=0.095  Sum_probs=59.9

Q ss_pred             CCCEEEEEcCC-CCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCC----C
Q 036330           82 TRRVKELSLDG-ITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNS----L  156 (187)
Q Consensus        82 ~~~v~~L~L~~-~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~----i  156 (187)
                      ...+++|+|++ +.++..+-..-...+...++|+.|++++|.++...-. ..-..+...++++.+++++|.+...    +
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~-~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAF-ALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHH-HHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHH-HHHHHHhhcccchhhhhccccccchhHHHH
Confidence            35789999997 4452100000011245678999999999988643210 0002345678999999999998643    3


Q ss_pred             hHHhhcCCCCCEEEcc--ccccc
Q 036330          157 LPSLTTIISLTNLSLG--YCGIE  177 (187)
Q Consensus       157 P~~l~~l~~L~~L~Ls--~N~l~  177 (187)
                      -..+...++|+.++|+  .|.+.
T Consensus        95 ~~~l~~~~~L~~l~L~l~~n~i~  117 (166)
T d1io0a_          95 VEALQSNTSLIELRIDNQSQPLG  117 (166)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCC
T ss_pred             HHHHHhCccccEEeeccCCCcCc
Confidence            3456778899987664  56664