Citrus Sinensis ID: 036333

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------
KEFAENEKAEGAATDAGSFNNSVAEKQAVLETVARVKPKKNDTKEEKSFKLNDVFNLDNDNGAEETPTLIDRKDNVFIISNFKSKYPVLQLDLRLISDLVVVIVFATCGGIAFACAGQPVITGYLLAGSIIGPGGFNFVSEMVQVETVAQFGVIFLLFALGLEFSTTKLRVVRAVAVLGGLLQIFLFMFLCGITALLFGIKLSEGIFVGTFLSMSSTAVVLKFLMEKNSTNALHGQVTIGTLILQDCAVGLLFALLPVLGGTSGVLQGMISITKLLVVLIAFLGILSILSRTCVPWLLKLMTSLSSQFCLVQTNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTDLAQHTLEQIEPIRNMFAALFLASIGMLIHVHFLWNHIDILLASVILVITIKTIIVFTVVKGFGYNNKTSVLVGMSLAQIGEFAFVLLSRSSNLHLVEGKLYLLLLGTTALSLVTTPLLFKLIPGVVHLGVLLRWFSPDSSIENGFKGDNLRSESGKQRITLIPIAIPLGPHDS
ccccccccccccccccccccHHHHccccEEEEEEEcccccccccccccccccccccccccccccccccEEcccccEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHccHHHcHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccEEEEEEEcccccccc
ccccccccccccccccccccccHHHHHHHHHHHEEEcccccccccccccccHEEcccccccccccccEEEEccccEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHEEHHHHHHEEccccccHHHcHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEcccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEccccccccHHHHHHHHccccEEEEEccccc
kefaenekaegaatdagsfnnsvAEKQAVLETVArvkpkkndtkeeksfklndvfnldndngaeetptlidrkdnvFIISNfkskypvlqLDLRLISDLVVVIVFATCGGiafacagqpviTGYLLagsiigpggfNFVSEMVQVETVAQFGVIFLLFALGLEFSTTKLRVVRAVAVLGGLLQIFLFMFLCGITALLFGIKLSEGIFVGTFLSMSSTAVVLKFLMEKnstnalhgqvTIGTLILQDCAVGLLFALLpvlggtsgVLQGMISITKLLVVLIAFLGILSILSRTCVPWLLKLMTSLSSQFCLVQTNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTDLAQHTLEQIEPIRNMFAALFLASIGMLIHVHFLWNHIDILLASVILVITIKTIIVFTVVKgfgynnktSVLVGMSLAQIGEFAFVLLSRSSNLHLVEGKLYLLLLGTTAlslvttpllfklipGVVHLGVLLrwfspdssiengfkgdnlrsesgkqritlipiaiplgphds
kefaenekaegaatdagsfnnsvAEKQAVLetvarvkpkkndtkeeksfklndvfnldndngaeetptlidrkdnVFIISNFKSKYPVLQLDLRLISDLVVVIVFATCGGIAFACAGQPVITGYLLAGSIIGPGGFNFVSEMVQVETVAQFGVIFLLFALGLEFSTTKLRVVRAVAVLGGLLQIFLFMFLCGITALLFGIKLSEGIFVGTFLSMSSTAVVLKFLMEKNSTNALHGQVTIGTLILQDCAVGLLFALLPVLGGTSGVLQGMISITKLLVVLIAFLGILSILSRTCVPWLLKLMTSLSSQFCLVQTNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTDLAQHTLEQIEPIRNMFAALFLASIGMLIHVHFLWNHIDILLASVILVITIKTIIVFTVVKGFGYNNKTSVLVGMSLAQIGEFAFVLLSRSSNLHLVEGKLYLLLLGTTALSLVTTPLLFKLIPGVVHLGVLLRWFSPDSSIENGFKGdnlrsesgkqritlipiaiplgphds
KEFAENEKAEGAATDAGSFNNSVAEKQAVLETVARVKPKKNDTKEEKSFKLNDVFNLDNDNGAEETPTLIDRKDNVFIISNFKSKYPVLQLDLRLISDLVVVIVFATCGGIAFACAGQPVITGYLLAGSIIGPGGFNFVSEMVQVETVAQFGVIFLLFALGLEFSTTKlrvvravavlggllQIFLFMFLCGITALLFGIKLSEGIFVGTFLSMSSTAVVLKFLMEKNSTNALHGQVTIGTLILQDCAVGLLFALLPVLGGTSGVLQGMISITKLLVVLIAFLGILSILSRTCVPWLLKLMTSLSSQFCLVQTNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTDLAQHTLEQIEPIRNMFAALFLASIGMLIHVHFLWNHIDILLASvilvitiktiivftvvKGFGYNNKTSVLVGMSLAQIGEFAFVLLSRSSNlhlvegklyllllgttalslvttPLLFKLIPGVVHLGVLLRWFSPDSSIENGFKGDNLRSESGKQRITLIPIAIPLGPHDS
*******************************************************************TLIDRKDNVFIISNFKSKYPVLQLDLRLISDLVVVIVFATCGGIAFACAGQPVITGYLLAGSIIGPGGFNFVSEMVQVETVAQFGVIFLLFALGLEFSTTKLRVVRAVAVLGGLLQIFLFMFLCGITALLFGIKLSEGIFVGTFLSMSSTAVVLKFLMEKNSTNALHGQVTIGTLILQDCAVGLLFALLPVLGGTSGVLQGMISITKLLVVLIAFLGILSILSRTCVPWLLKLMTSLSSQFCLVQTNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTDLAQHTLEQIEPIRNMFAALFLASIGMLIHVHFLWNHIDILLASVILVITIKTIIVFTVVKGFGYNNKTSVLVGMSLAQIGEFAFVLLSRSSNLHLVEGKLYLLLLGTTALSLVTTPLLFKLIPGVVHLGVLLRWFSP*********************ITLIPIAI*******
*************************KQAVLET******************************AEETPTLIDRKDNVFIISNFKSKYPVLQLDLRLISDLVVVIVFATCGGIAFACAGQPVITGYLLAGSIIGPGGFNFVSEMVQVETVAQFGVIFLLFALGLEFSTTKLRVVRAVAVLGGLLQIFLFMFLCGITALLFGIKLSEGIFVGTFLSMSSTAVVLKFLM**********QVTIGTLILQDCAVGLLFALLPVLGGTSGVLQGMISITKLLVVLIAFLGILSILSRTCVPWLLKLMTSLSSQFCLVQTNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTDLAQHTLEQIEPIRNMFAALFLASIGMLIHVHFLWNHIDILLASVILVITIKTIIVFTVVKGFGYNNKTSVLVGMSLAQIGEFAFVLLSRSSNLHLVEGKLYLLLLGTTALSLVTTPLLFKLIPGVVHLGVL*************************QRITLIPIA*PL*****
*************TDAGSFNNSVAEKQAVLETVARV**********KSFKLNDVFNLDNDNGAEETPTLIDRKDNVFIISNFKSKYPVLQLDLRLISDLVVVIVFATCGGIAFACAGQPVITGYLLAGSIIGPGGFNFVSEMVQVETVAQFGVIFLLFALGLEFSTTKLRVVRAVAVLGGLLQIFLFMFLCGITALLFGIKLSEGIFVGTFLSMSSTAVVLKFLMEKNSTNALHGQVTIGTLILQDCAVGLLFALLPVLGGTSGVLQGMISITKLLVVLIAFLGILSILSRTCVPWLLKLMTSLSSQFCLVQTNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTDLAQHTLEQIEPIRNMFAALFLASIGMLIHVHFLWNHIDILLASVILVITIKTIIVFTVVKGFGYNNKTSVLVGMSLAQIGEFAFVLLSRSSNLHLVEGKLYLLLLGTTALSLVTTPLLFKLIPGVVHLGVLLRWFSPDSSIENGFKGDNLRSESGKQRITLIPIAIPLGPHDS
********************NSVAEKQAVLETVARVKPK*N***EEKSFKLNDVFNLDNDNGAEETPTLIDRKDNVFIISNFKSKYPVLQLDLRLISDLVVVIVFATCGGIAFACAGQPVITGYLLAGSIIGPGGFNFVSEMVQVETVAQFGVIFLLFALGLEFSTTKLRVVRAVAVLGGLLQIFLFMFLCGITALLFGIKLSEGIFVGTFLSMSSTAVVLKFLMEKNSTNALHGQVTIGTLILQDCAVGLLFALLPVLGGTSGVLQGMISITKLLVVLIAFLGILSILSRTCVPWLLKLMTSLSSQFCLVQTNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTDLAQHTLEQIEPIRNMFAALFLASIGMLIHVHFLWNHIDILLASVILVITIKTIIVFTVVKGFGYNNKTSVLVGMSLAQIGEFAFVLLSRSSNLHLVEGKLYLLLLGTTALSLVTTPLLFKLIPGVVHLGVLLRWFSPDSSIENGFKGDNLRSESGKQRITLIPIAIPLGP***
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KEFAENEKAEGAATDAGSFNNSVAEKQAVLETVARVKPKKNDTKEEKSFKLNDVFNLDNDNGAEETPTLIDRKDNVFIISNFKSKYPVLQLDLRLISDLVVVIVFATCGGIAFACAGQPVITGYLLAGSIIGPGGFNFVSEMVQVETVAQFGVIFLLFALGLEFSTTKLRVVRAVAVLGGLLQIFLFMFLCGITALLFGIKLSEGIFVGTFLSMSSTAVVLKFLMEKNSTNALHGQVTIGTLILQDCAVGLLFALLPVLGGTSGVLQGMISITKLLVVLIAFLGILSILSRTCVPWLLKLMTSLSSQFCLVQTNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTDLAQHTLEQIEPIRNMFAALFLASIGMLIHVHFLWNHIDILLASVILVITIKTIIVFTVVKGFGYNNKTSVLVGMSLAQIGEFAFVLLSRSSNLHLVEGKLYLLLLGTTALSLVTTPLLFKLIPGVVHLGVLLRWFSPDSSIENGFKGDNLRSESGKQRITLIPIAIPLGPHDS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query527 2.2.26 [Sep-21-2011]
B5X0N6597 K(+) efflux antiporter 6 yes no 0.960 0.847 0.827 0.0
Q9ZUN3592 K(+) efflux antiporter 4 no no 0.969 0.863 0.816 0.0
Q8VYR9568 K(+) efflux antiporter 5 no no 0.948 0.880 0.696 0.0
P39830 558 Inner membrane protein Yb N/A no 0.658 0.621 0.332 2e-40
A8AQP0 601 Glutathione-regulated pot yes no 0.732 0.642 0.306 6e-40
Q6UWJ1677 Transmembrane and coiled- yes no 0.840 0.654 0.3 1e-39
Q8BH01678 Transmembrane and coiled- yes no 0.876 0.681 0.286 1e-39
B2VK47 601 Glutathione-regulated pot yes no 0.696 0.610 0.315 6e-39
B4SUV7 601 Glutathione-regulated pot no no 0.662 0.580 0.298 1e-37
B4TXF9 601 Glutathione-regulated pot no no 0.662 0.580 0.298 1e-37
>sp|B5X0N6|KEA6_ARATH K(+) efflux antiporter 6 OS=Arabidopsis thaliana GN=KEA6 PE=2 SV=1 Back     alignment and function desciption
 Score =  822 bits (2123), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/517 (82%), Positives = 473/517 (91%), Gaps = 11/517 (2%)

Query: 1   KEFAENEKAEGAATDAGSFNNSVAEKQAVLETVARVKP-KKNDTKEEKSFKLNDVFNLDN 59
           KEF E+++ E A  D GSFNNSVA +QAVLETVARVK  KKN+TKEEK F+L+DVFNL+N
Sbjct: 84  KEFNESDQNEVA--DPGSFNNSVAGQQAVLETVARVKSTKKNETKEEKRFQLHDVFNLNN 141

Query: 60  DNGAEETPTLIDRKDNVFIISNFKSKYPVLQLDLRLISDLVVVIVFATCGGIAFACAGQP 119
           DN AE+TPTLIDRKDNVFIISN KSKYPVLQLDLRLISDLVVVIV ATCGGIAFACAGQP
Sbjct: 142 DNRAEDTPTLIDRKDNVFIISNSKSKYPVLQLDLRLISDLVVVIVSATCGGIAFACAGQP 201

Query: 120 VITGYLLAGSIIGPGGFNFVSEMVQVETVAQFGVIFLLFALGLEFSTTKLRVVRAVAVLG 179
           VITGYLLAGSIIGPGG NF+SEMVQVETVAQFGV+FLLFALGLEFST KL+VVR+VAVLG
Sbjct: 202 VITGYLLAGSIIGPGGLNFISEMVQVETVAQFGVVFLLFALGLEFSTAKLKVVRSVAVLG 261

Query: 180 GLLQIFLFMFLCGITALLFGIKLSEGIFVGTFLSMSSTAVVLKFLMEKNSTNALHGQVTI 239
           GLLQI LFMFLCGIT  L G K SEG+FVG FLSMSSTAVVLKFLMEKNSTN+LHGQVTI
Sbjct: 262 GLLQILLFMFLCGITVSLCGGKRSEGVFVGAFLSMSSTAVVLKFLMEKNSTNSLHGQVTI 321

Query: 240 GTLILQDCAVGLLFALLPVLGGTSGVLQGMISITKLLVVLIAFLGILSILSRTCVPWLLK 299
           G LILQDCAVGLLFALLPVL G SG++ GM+SI K++V+L++FL +LSILSRTC+PWLLK
Sbjct: 322 GILILQDCAVGLLFALLPVLEGNSGIVHGMLSIGKVVVLLLSFLAVLSILSRTCIPWLLK 381

Query: 300 LMTSLSSQFCLVQTNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTDLAQHT 359
           LM SLSS     QTNELYQLA+VAFCLLVAWCSDKLGLSLELGSFAAGVMISTTDLA+HT
Sbjct: 382 LMVSLSS-----QTNELYQLAAVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTDLAEHT 436

Query: 360 LEQIEPIRNMFAALFLASIGMLIHVHFLWNHIDILLASVILVITIKTIIVFTVVKGFGYN 419
           LEQIEPIRN+FAALFLASIGML++VHFLW H+DILLASVILVI IKT IV TVVKGFGYN
Sbjct: 437 LEQIEPIRNLFAALFLASIGMLVNVHFLWTHVDILLASVILVIIIKTTIVTTVVKGFGYN 496

Query: 420 NKTSVLVGMSLAQIGEFAFVLLSRSSNLHLVEGKLYLLLLGTTALSLVTTPLLFKLIPGV 479
           NKT++LVG+SLAQIGEFAFVLLSR+SNLHL+EGKLYLLLLGTTALSLVTTPL+FK+IP V
Sbjct: 497 NKTALLVGISLAQIGEFAFVLLSRASNLHLIEGKLYLLLLGTTALSLVTTPLVFKMIPAV 556

Query: 480 VHLGVLLRWFSPDSSIENGFKGDNLRSESGKQRITLI 516
           VHLG+LL+WFSPDS+IE   KG+ +RSESGKQR+ L+
Sbjct: 557 VHLGILLKWFSPDSTIE---KGEIVRSESGKQRMILM 590
May operate as a K(+)/H(+) antiporter.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9ZUN3|KEA4_ARATH K(+) efflux antiporter 4 OS=Arabidopsis thaliana GN=KEA4 PE=2 SV=2 Back     alignment and function description
>sp|Q8VYR9|KEA5_ARATH K(+) efflux antiporter 5 OS=Arabidopsis thaliana GN=KEA5 PE=2 SV=1 Back     alignment and function description
>sp|P39830|YBAL_ECOLI Inner membrane protein YbaL OS=Escherichia coli (strain K12) GN=ybaL PE=1 SV=2 Back     alignment and function description
>sp|A8AQP0|KEFB_CITK8 Glutathione-regulated potassium-efflux system protein KefB OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=kefB PE=3 SV=1 Back     alignment and function description
>sp|Q6UWJ1|TMCO3_HUMAN Transmembrane and coiled-coil domain-containing protein 3 OS=Homo sapiens GN=TMCO3 PE=2 SV=1 Back     alignment and function description
>sp|Q8BH01|TMCO3_MOUSE Transmembrane and coiled-coil domain-containing protein 3 OS=Mus musculus GN=Tmco3 PE=2 SV=1 Back     alignment and function description
>sp|B2VK47|KEFB_ERWT9 Glutathione-regulated potassium-efflux system protein KefB OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=kefB PE=3 SV=1 Back     alignment and function description
>sp|B4SUV7|KEFB_SALNS Glutathione-regulated potassium-efflux system protein KefB OS=Salmonella newport (strain SL254) GN=kefB PE=3 SV=1 Back     alignment and function description
>sp|B4TXF9|KEFB_SALSV Glutathione-regulated potassium-efflux system protein KefB OS=Salmonella schwarzengrund (strain CVM19633) GN=kefB PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query527
225444959576 PREDICTED: K(+) efflux antiporter 4-like 0.977 0.894 0.857 0.0
297738684522 unnamed protein product [Vitis vinifera] 0.977 0.986 0.857 0.0
356511411586 PREDICTED: K(+) efflux antiporter 4-like 0.977 0.878 0.846 0.0
356562191 662 PREDICTED: K(+) efflux antiporter 6-like 0.956 0.761 0.858 0.0
356523691586 PREDICTED: K(+) efflux antiporter 4-like 0.977 0.878 0.838 0.0
356552342598 PREDICTED: K(+) efflux antiporter 6-like 0.971 0.856 0.838 0.0
224088846573 potassium efflux antiporter [Populus tri 0.979 0.900 0.863 0.0
449450345 646 PREDICTED: K(+) efflux antiporter 6-like 0.925 0.755 0.862 0.0
255546171569 Inner membrane protein ybaL, putative [R 0.958 0.887 0.835 0.0
449435844587 PREDICTED: K(+) efflux antiporter 4-like 0.965 0.867 0.850 0.0
>gi|225444959|ref|XP_002282458.1| PREDICTED: K(+) efflux antiporter 4-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  884 bits (2284), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/527 (85%), Positives = 481/527 (91%), Gaps = 12/527 (2%)

Query: 1   KEFAENEKAEGAATDAGSFNNSVAEKQAVLETVARVKPKKNDTKEEKSFKLNDVFNLDND 60
           KEF ENE+    A+DAGSFNNSVAE+QAVLETVARV+PKKNDTKEEKSF+L++VFNLDN+
Sbjct: 62  KEFTENEQT--GASDAGSFNNSVAEQQAVLETVARVRPKKNDTKEEKSFQLHNVFNLDNE 119

Query: 61  NGAEETPTLIDRKDNVFIISNFKSKYPVLQLDLRLISDLVVVIVFATCGGIAFACAGQPV 120
           N  E+TPTLIDRKDNVFI+SN KSKYPVLQLDLRLISDLVVVIV ATCGGIAFACAGQPV
Sbjct: 120 NRQEDTPTLIDRKDNVFIMSNPKSKYPVLQLDLRLISDLVVVIVSATCGGIAFACAGQPV 179

Query: 121 ITGYLLAGSIIGPGGFNFVSEMVQVETVAQFGVIFLLFALGLEFSTTKLRVVRAVAVLGG 180
           ITGYLLAGS+IGPGG +FVSEMVQVETVAQFGVIFLLFALGLEFSTTKLRVVRAVAVLGG
Sbjct: 180 ITGYLLAGSVIGPGGLSFVSEMVQVETVAQFGVIFLLFALGLEFSTTKLRVVRAVAVLGG 239

Query: 181 LLQIFLFMFLCGITALLFGIKLSEGIFVGTFLSMSSTAVVLKFLMEKNSTNALHGQVTIG 240
           LLQIFLFM LCGITA L G K SEG+FVG  LSMSSTAVVLKFLME+NS +ALHGQVT+G
Sbjct: 240 LLQIFLFMCLCGITASLCGGKPSEGVFVGVLLSMSSTAVVLKFLMERNSISALHGQVTVG 299

Query: 241 TLILQDCAVGLLFALLPVLGGTSGVLQGMISITKLLVVLIAFLGILSILSRTCVPWLLKL 300
           TLILQDCAVGLLFALLPVLGGTSG+LQG+IS+TK LVVLI FL ILSILSRTCVPW LKL
Sbjct: 300 TLILQDCAVGLLFALLPVLGGTSGILQGVISMTKSLVVLITFLAILSILSRTCVPWFLKL 359

Query: 301 MTSLSSQFCLVQTNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTDLAQHTL 360
           M SLSS     QTNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTDLAQHTL
Sbjct: 360 MVSLSS-----QTNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTDLAQHTL 414

Query: 361 EQIEPIRNMFAALFLASIGMLIHVHFLWNHIDILLASVILVITIKTIIVFTVVKGFGYNN 420
           EQ+EPIRN FAALFLASIGMLIHVHFLWNH+DILLA+VILVI IKTI+V TVVKGFGYNN
Sbjct: 415 EQVEPIRNFFAALFLASIGMLIHVHFLWNHVDILLAAVILVIIIKTIVVSTVVKGFGYNN 474

Query: 421 KTSVLVGMSLAQIGEFAFVLLSRSSNLHLVEGKLYLLLLGTTALSLVTTPLLFKLIPGVV 480
           KTS+LVGMSLAQIGEFAFVLLSR+SNLHLVEGKLYLLLLGTTALSLVTTPLLFKLIP VV
Sbjct: 475 KTSLLVGMSLAQIGEFAFVLLSRASNLHLVEGKLYLLLLGTTALSLVTTPLLFKLIPAVV 534

Query: 481 HLGVLLRWFSPDSSIENGFKGDNLRSESGKQRITLIPIAIPLGPHDS 527
           HLGVLLRWFSPD   E GFKGD+ R++S K RITL    +  G HDS
Sbjct: 535 HLGVLLRWFSPDVPSEIGFKGDSFRADSAK-RITL----MVQGSHDS 576

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297738684|emb|CBI27929.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356511411|ref|XP_003524420.1| PREDICTED: K(+) efflux antiporter 4-like [Glycine max] Back     alignment and taxonomy information
>gi|356562191|ref|XP_003549355.1| PREDICTED: K(+) efflux antiporter 6-like [Glycine max] Back     alignment and taxonomy information
>gi|356523691|ref|XP_003530469.1| PREDICTED: K(+) efflux antiporter 4-like [Glycine max] Back     alignment and taxonomy information
>gi|356552342|ref|XP_003544527.1| PREDICTED: K(+) efflux antiporter 6-like [Glycine max] Back     alignment and taxonomy information
>gi|224088846|ref|XP_002308566.1| potassium efflux antiporter [Populus trichocarpa] gi|222854542|gb|EEE92089.1| potassium efflux antiporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449450345|ref|XP_004142923.1| PREDICTED: K(+) efflux antiporter 6-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255546171|ref|XP_002514145.1| Inner membrane protein ybaL, putative [Ricinus communis] gi|223546601|gb|EEF48099.1| Inner membrane protein ybaL, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449435844|ref|XP_004135704.1| PREDICTED: K(+) efflux antiporter 4-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query527
TAIR|locus:2181910597 KEA6 "K+ efflux antiporter 6" 0.960 0.847 0.736 2.5e-191
TAIR|locus:2050382592 KEA4 "K+ efflux antiporter 4" 0.969 0.863 0.735 8.8e-189
TAIR|locus:2165326568 KEA5 "K+ efflux antiporter 5" 0.925 0.859 0.634 4.3e-157
TIGR_CMR|DET_1627 567 DET_1627 "sodium/hydrogen exch 0.618 0.574 0.351 9.6e-41
TIGR_CMR|GSU_1204 684 GSU_1204 "sodium/hydrogen exch 0.639 0.492 0.297 1.7e-38
TIGR_CMR|SO_1647 648 SO_1647 "glutathione-regulated 0.626 0.509 0.303 1.2e-37
MGI|MGI:2444946678 Tmco3 "transmembrane and coile 0.834 0.648 0.274 4.3e-37
UNIPROTKB|Q6UWJ1677 TMCO3 "Transmembrane and coile 0.791 0.615 0.268 7.1e-37
UNIPROTKB|F1RN34678 TMCO3 "Uncharacterized protein 0.779 0.606 0.279 7.2e-37
UNIPROTKB|A5D7N7677 TMCO3 "Uncharacterized protein 0.842 0.655 0.268 7.4e-37
TAIR|locus:2181910 KEA6 "K+ efflux antiporter 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1854 (657.7 bits), Expect = 2.5e-191, P = 2.5e-191
 Identities = 381/517 (73%), Positives = 423/517 (81%)

Query:     1 KEFAENEKAEGAATDAGSFNNSVAEKQAVLETVARVKP-KKNDTKEEKSFKLNDVFNLDN 59
             KEF E+++ E A  D GSFNNSVA +QAVLETVARVK  KKN+TKEEK F+L+DVFNL+N
Sbjct:    84 KEFNESDQNEVA--DPGSFNNSVAGQQAVLETVARVKSTKKNETKEEKRFQLHDVFNLNN 141

Query:    60 DNGAEETPTLIDRKDNVFIISNFKSKYPVLQLDLRLISDLVVVIVFATCGGIAFACAGQP 119
             DN AE+TPTLIDRKDNVFIISN KSKYPVLQLDLRLISDLVVVIV ATCGGIAFACAGQP
Sbjct:   142 DNRAEDTPTLIDRKDNVFIISNSKSKYPVLQLDLRLISDLVVVIVSATCGGIAFACAGQP 201

Query:   120 VITGYLLAGSIIGPGGFNFVSEMVQVETVAQFGVIFLLFALGLEFSTTKXXXXXXXXXXX 179
             VITGYLLAGSIIGPGG NF+SEMVQVETVAQFGV+FLLFALGLEFST K           
Sbjct:   202 VITGYLLAGSIIGPGGLNFISEMVQVETVAQFGVVFLLFALGLEFSTAKLKVVRSVAVLG 261

Query:   180 XXXQIFLFMFLCGITALLFGIKLSEGIFVGTFLSMSSTAVVLKFLMEKNSTNALHGQVTI 239
                QI LFMFLCGIT  L G K SEG+FVG FLSMSSTAVVLKFLMEKNSTN+LHGQVTI
Sbjct:   262 GLLQILLFMFLCGITVSLCGGKRSEGVFVGAFLSMSSTAVVLKFLMEKNSTNSLHGQVTI 321

Query:   240 GTLILQDCAVGLLFALLPVLGGTSGVLQGMISITKLLVVLIAFLGILSILSRTCVPWLLK 299
             G LILQDCAVGLLFALLPVL G SG++ GM+SI K++V+L++FL +LSILSRTC+PWLLK
Sbjct:   322 GILILQDCAVGLLFALLPVLEGNSGIVHGMLSIGKVVVLLLSFLAVLSILSRTCIPWLLK 381

Query:   300 LMTSLSSQFCLVQTNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTDLAQHT 359
             LM SLSSQ     TNELYQLA+VAFCLLVAWCSDKLGLSLELGSFAAGVMISTTDLA+HT
Sbjct:   382 LMVSLSSQ-----TNELYQLAAVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTDLAEHT 436

Query:   360 LEQIEPIRNMFAALFLASIGMLIHVHFLWNHIDILLASXXXXXXXXXXXXXXXXKGFGYN 419
             LEQIEPIRN+FAALFLASIGML++VHFLW H+DILLAS                KGFGYN
Sbjct:   437 LEQIEPIRNLFAALFLASIGMLVNVHFLWTHVDILLASVILVIIIKTTIVTTVVKGFGYN 496

Query:   420 NKTSVLVGMSLAQIGEFAFVLLSRSSNXXXXXXXXXXXXXXXXXXXXXXXPLLFKLIPGV 479
             NKT++LVG+SLAQIGEFAFVLLSR+SN                       PL+FK+IP V
Sbjct:   497 NKTALLVGISLAQIGEFAFVLLSRASNLHLIEGKLYLLLLGTTALSLVTTPLVFKMIPAV 556

Query:   480 VHLGVLLRWFSPDSSIENGFKGDNLRSESGKQRITLI 516
             VHLG+LL+WFSPDS+IE   KG+ +RSESGKQR+ L+
Sbjct:   557 VHLGILLKWFSPDSTIE---KGEIVRSESGKQRMILM 590
GO:0006812 "cation transport" evidence=IEA
GO:0006813 "potassium ion transport" evidence=ISS
GO:0015079 "potassium ion transmembrane transporter activity" evidence=ISS
GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA
GO:0015386 "potassium:hydrogen antiporter activity" evidence=ISS;NAS
GO:0016021 "integral to membrane" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
GO:0016020 "membrane" evidence=IDA
GO:0006814 "sodium ion transport" evidence=RCA
GO:0010351 "lithium ion transport" evidence=RCA
TAIR|locus:2050382 KEA4 "K+ efflux antiporter 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2165326 KEA5 "K+ efflux antiporter 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|DET_1627 DET_1627 "sodium/hydrogen exchanger family protein" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_1204 GSU_1204 "sodium/hydrogen exchanger family/TrkA domain protein" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|SO_1647 SO_1647 "glutathione-regulated potassium-efflux system protein KefB, putative" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
MGI|MGI:2444946 Tmco3 "transmembrane and coiled-coil domains 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q6UWJ1 TMCO3 "Transmembrane and coiled-coil domain-containing protein 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1RN34 TMCO3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|A5D7N7 TMCO3 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
B5X0N6KEA6_ARATHNo assigned EC number0.82780.96010.8475yesno
Q9ZUN3KEA4_ARATHNo assigned EC number0.81660.96960.8631nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query527
pfam00999370 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchang 2e-68
COG0475397 COG0475, KefB, Kef-type K+ transport systems, memb 4e-61
COG4651408 COG4651, RosB, Kef-type K+ transport system, predi 4e-57
PRK10669 558 PRK10669, PRK10669, putative cation:proton antipor 7e-52
PRK03659 601 PRK03659, PRK03659, glutathione-regulated potassiu 2e-48
TIGR00932273 TIGR00932, 2a37, transporter, monovalent cation:pr 7e-42
PRK03562 621 PRK03562, PRK03562, glutathione-regulated potassiu 4e-39
PLN03159 832 PLN03159, PLN03159, cation/H(+) antiporter 15; Pro 9e-05
>gnl|CDD|216235 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family Back     alignment and domain information 
 Score =  224 bits (572), Expect = 2e-68
 Identities = 112/380 (29%), Positives = 187/380 (49%), Gaps = 14/380 (3%)

Query: 99  LVVVIVFATCGGIAFACAGQPVITGYLLAGSIIGPGGFNFVSEMVQVETVAQFGVIFLLF 158
            V++++ A   G+     G P + G +LAG ++GP G   V   + +E +A+ G+  LLF
Sbjct: 1   AVLLLLLALLAGLLARRLGLPPVVGLILAGILLGPSGLGLVEPDLDLEVLAELGLPLLLF 60

Query: 159 ALGLEFSTTKLRVVRAVAVLGGLLQIFLFMFLCGITALLF--GIKLSEGIFVGTFLSMSS 216
             GLE    +LR      +L  LL + +   L  + ALL   GI L E +  G  LS +S
Sbjct: 61  LAGLELDLRELRKNGKSILLLALLGVLIPFLLGLLLALLGGLGIPLLEALLFGAALSATS 120

Query: 217 TAVVLKFLMEKNSTNALHGQVTIGTLILQDCAVGLLFALLPVLGGTSGVLQGMISITKLL 276
             VVL  L E+   N   G + +G  +L D    +L A+L  L G  G+         LL
Sbjct: 121 PVVVLAILKERGRLNTRLGTLILGESVLNDAVAVVLLAVLLALAGVGGLSDLG-----LL 175

Query: 277 VVLIAFLGILSILSRTCVPWLLKLMTSLSSQFCLVQTNELYQLASVAFCLLVAWCSDKLG 336
           +++   + +  +L      WLL+L+T  +S        EL  L  +A  LL A  ++ LG
Sbjct: 176 LLIFLVVALGGLLLGLVFGWLLRLITRFTS-----GDRELEVLLVLALALLAALLAELLG 230

Query: 337 LSLELGSFAAGVMISTTDLAQHTLEQIEPIRN-MFAALFLASIGMLIHVH-FLWNHIDIL 394
           LS  LG+F AG+++S    A    E++EP    +F  LF  S+G+ + +   L + + ++
Sbjct: 231 LSGILGAFLAGLVLSNYAFANELSEKLEPFGYGLFLPLFFVSVGLSLDLSSLLLSLLLLV 290

Query: 395 LASVILVITIKTIIVFTVVKGFGYNNKTSVLVGMSLAQIGEFAFVLLSRSSNLHLVEGKL 454
           L  ++ ++  K + VF + +  G + + +++VG    Q G  +  L +    L L++ +L
Sbjct: 291 LLLLVAILLGKLLGVFLLARLLGLSLREALIVGFGGLQRGAVSLALAAIGLQLGLIDREL 350

Query: 455 YLLLLGTTALSLVTTPLLFK 474
           Y LL+    L+ +  PLL K
Sbjct: 351 YTLLVAVVLLTTLLKPLLKK 370

Na/H antiporters are key transporters in maintaining the pH of actively metabolising cells. The molecular mechanisms of antiport are unclear. These antiporters contain 10-12 transmembrane regions (M) at the amino-terminus and a large cytoplasmic region at the carboxyl terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. Length = 370
>gnl|CDD|223551 COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|226998 COG4651, RosB, Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|182633 PRK10669, PRK10669, putative cation:proton antiport protein; Provisional Back     alignment and domain information
>gnl|CDD|179625 PRK03659, PRK03659, glutathione-regulated potassium-efflux system protein KefB; Provisional Back     alignment and domain information
>gnl|CDD|233195 TIGR00932, 2a37, transporter, monovalent cation:proton antiporter-2 (CPA2) family Back     alignment and domain information
>gnl|CDD|235131 PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional Back     alignment and domain information
>gnl|CDD|215608 PLN03159, PLN03159, cation/H(+) antiporter 15; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 527
PLN03159 832 cation/H(+) antiporter 15; Provisional 100.0
PRK03562 621 glutathione-regulated potassium-efflux system prot 100.0
PRK03659 601 glutathione-regulated potassium-efflux system prot 100.0
PRK10669 558 putative cation:proton antiport protein; Provision 100.0
COG0475397 KefB Kef-type K+ transport systems, membrane compo 100.0
COG4651408 RosB Kef-type K+ transport system, predicted NAD-b 100.0
KOG1650 769 consensus Predicted K+/H+-antiporter [Inorganic io 100.0
PRK05326 562 potassium/proton antiporter; Reviewed 100.0
TIGR00932273 2a37 transporter, monovalent cation:proton antipor 100.0
PF00999380 Na_H_Exchanger: Sodium/hydrogen exchanger family; 100.0
TIGR00844 810 c_cpa1 na(+)/h(+) antiporter. This model is specif 100.0
TIGR00831525 a_cpa1 Na+/H+ antiporter, bacterial form. This mod 99.97
COG0025429 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorg 99.96
COG3263 574 NhaP-type Na+/H+ and K+/H+ antiporters with a uniq 99.95
TIGR00840559 b_cpa1 sodium/hydrogen exchanger 3. This model is 99.94
PRK14853423 nhaA pH-dependent sodium/proton antiporter; Provis 99.79
KOG4505467 consensus Na+/H+ antiporter [Inorganic ion transpo 99.75
KOG1965575 consensus Sodium/hydrogen exchanger protein [Inorg 99.72
TIGR00773373 NhaA Na+/H+ antiporter NhaA. These proteins are me 99.53
PRK14856438 nhaA pH-dependent sodium/proton antiporter; Provis 99.42
PRK14855423 nhaA pH-dependent sodium/proton antiporter; Provis 99.31
PRK09560389 nhaA pH-dependent sodium/proton antiporter; Review 99.31
PRK09561388 nhaA pH-dependent sodium/proton antiporter; Review 99.27
PRK14854383 nhaA pH-dependent sodium/proton antiporter; Provis 99.26
PF06965378 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IP 99.09
COG3004390 NhaA Na+/H+ antiporter [Inorganic ion transport an 98.95
KOG1966 670 consensus Sodium/hydrogen exchanger protein [Inorg 98.59
PF05684378 DUF819: Protein of unknown function (DUF819); Inte 98.27
PRK12460312 2-keto-3-deoxygluconate permease; Provisional 97.79
COG0385319 Predicted Na+-dependent transporter [General funct 97.73
TIGR00698335 conserved hypothetical integral membrane protein. 97.6
PF03601305 Cons_hypoth698: Conserved hypothetical protein 698 97.51
PF03812314 KdgT: 2-keto-3-deoxygluconate permease; InterPro: 97.24
PF03616368 Glt_symporter: Sodium/glutamate symporter; InterPr 97.19
PRK03562621 glutathione-regulated potassium-efflux system prot 97.06
PRK03659601 glutathione-regulated potassium-efflux system prot 97.03
COG2855334 Predicted membrane protein [Function unknown] 97.02
TIGR00210398 gltS sodium--glutamate symport carrier (gltS). 97.01
TIGR00932273 2a37 transporter, monovalent cation:proton antipor 97.01
COG0786404 GltS Na+/glutamate symporter [Amino acid transport 96.92
PF13593313 DUF4137: SBF-like CPA transporter family (DUF4137) 96.85
PF03956191 DUF340: Membrane protein of unknown function (DUF3 96.54
PRK10669 558 putative cation:proton antiport protein; Provision 96.49
PF03601305 Cons_hypoth698: Conserved hypothetical protein 698 96.49
COG0475397 KefB Kef-type K+ transport systems, membrane compo 96.44
PLN03159 832 cation/H(+) antiporter 15; Provisional 96.43
PF01758187 SBF: Sodium Bile acid symporter family; InterPro: 96.29
PRK05326 562 potassium/proton antiporter; Reviewed 96.15
TIGR00793314 kdgT 2-keto-3-deoxygluconate transporter. This fam 96.03
TIGR00832328 acr3 arsenical-resistance protein. The first prote 95.97
TIGR00783347 ccs citrate carrier protein, CCS family. These pro 95.97
TIGR03082156 Gneg_AbrB_dup membrane protein AbrB duplication. T 95.87
TIGR00698 335 conserved hypothetical integral membrane protein. 95.87
TIGR00841286 bass bile acid transporter. Functionally character 95.7
PF06826169 Asp-Al_Ex: Predicted Permease Membrane Region; Int 95.63
PRK03818 552 putative transporter; Validated 95.6
COG2855 334 Predicted membrane protein [Function unknown] 95.31
TIGR03802562 Asp_Ala_antiprt aspartate-alanine antiporter. All 95.3
TIGR03802 562 Asp_Ala_antiprt aspartate-alanine antiporter. All 95.08
TIGR00844 810 c_cpa1 na(+)/h(+) antiporter. This model is specif 95.06
TIGR00831 525 a_cpa1 Na+/H+ antiporter, bacterial form. This mod 94.95
PF05145318 AmoA: Putative ammonia monooxygenase; InterPro: IP 94.68
COG0798342 ACR3 Arsenite efflux pump ACR3 and related permeas 94.65
PF03390414 2HCT: 2-hydroxycarboxylate transporter family; Int 94.16
COG2985544 Predicted permease [General function prediction on 94.1
COG3493438 CitS Na+/citrate symporter [Energy production and 93.82
PF03616368 Glt_symporter: Sodium/glutamate symporter; InterPr 93.81
PF05145318 AmoA: Putative ammonia monooxygenase; InterPro: IP 93.72
COG0786 404 GltS Na+/glutamate symporter [Amino acid transport 93.55
PRK04972 558 putative transporter; Provisional 93.4
PRK05274326 2-keto-3-deoxygluconate permease; Provisional 93.04
PF03956191 DUF340: Membrane protein of unknown function (DUF3 92.96
TIGR01625154 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplicati 92.87
COG1346230 LrgB Putative effector of murein hydrolase [Cell e 92.43
TIGR03082156 Gneg_AbrB_dup membrane protein AbrB duplication. T 92.32
PRK04972558 putative transporter; Provisional 92.02
COG3180352 AbrB Putative ammonia monooxygenase [General funct 92.01
KOG1650769 consensus Predicted K+/H+-antiporter [Inorganic io 91.79
PF05684 378 DUF819: Protein of unknown function (DUF819); Inte 90.89
PRK12460312 2-keto-3-deoxygluconate permease; Provisional 90.71
TIGR00946321 2a69 he Auxin Efflux Carrier (AEC) Family. 90.42
COG2431297 Predicted membrane protein [Function unknown] 89.45
TIGR00210398 gltS sodium--glutamate symport carrier (gltS). 89.41
COG0025 429 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorg 87.72
PF00999380 Na_H_Exchanger: Sodium/hydrogen exchanger family; 87.72
COG4651 408 RosB Kef-type K+ transport system, predicted NAD-b 86.1
TIGR00808254 malonate_madM malonate transporter, MadM subunit. 83.93
PF03547 385 Mem_trans: Membrane transport protein; InterPro: I 83.86
TIGR00946321 2a69 he Auxin Efflux Carrier (AEC) Family. 83.76
PRK09903314 putative transporter YfdV; Provisional 83.45
PRK03818552 putative transporter; Validated 83.29
PRK04125141 murein hydrolase regulator LrgA; Provisional 82.04
TIGR00783347 ccs citrate carrier protein, CCS family. These pro 80.04
>PLN03159 cation/H(+) antiporter 15; Provisional Back     alignment and domain information 
Probab=100.00  E-value=4.6e-58  Score=519.65  Aligned_cols=405  Identities=18%  Similarity=0.296  Sum_probs=346.9

Q ss_pred             ecCCCCeEEecCCCCC-CcchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCcCCCc-------
Q 036333           70 IDRKDNVFIISNFKSK-YPVLQLDLRLISDLVVVIVFATCGGIAFACAGQPVITGYLLAGSIIGPGGFNFVSE-------  141 (527)
Q Consensus        70 ~~~~~~~~~~~~p~~~-~p~l~~d~~li~~l~lil~~a~~~~~l~~rl~lP~iig~IlaGilLGPs~L~~i~~-------  141 (527)
                      ..+++|.|+++||+++ +|+      +++|++++++++.++++++||+|||.++|||++|+++||+++|.++.       
T Consensus        24 ~~~s~g~~~g~~pl~~~l~~------~llql~lil~~a~l~~~ll~rl~~P~ivgeIlaGIlLGPs~lg~i~~~~~~~fp   97 (832)
T PLN03159         24 MITTNGIWQGDNPLDFSLPL------FILQLTLVVVTTRLLVFILKPFRQPRVISEILGGVILGPSVLGQSEVFANTIFP   97 (832)
T ss_pred             CccCCcccccCCcccchHHH------HHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHhcCHhhhCcChhhhhhcCC
Confidence            4578999999999998 665      56999999999999999999999999999999999999999998742       


Q ss_pred             ---hHHHHHHHHHHHHHHHHHHhhcCCchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhcC------ChHHHHHHHHHH
Q 036333          142 ---MVQVETVAQFGVIFLLFALGLEFSTTKLRVVRAVAVLGGLLQIFLFMFLCGITALLFGI------KLSEGIFVGTFL  212 (527)
Q Consensus       142 ---~~~~~~l~~lgl~~llF~~Gle~d~~~lr~~~~~~~~~~~~~~~l~~~~~~~~~~~lg~------~~~~al~lg~~l  212 (527)
                         .+.+++++++|++++||.+|+|+|++.+|+++|+++.+++.++++|++++..++++++.      ....++++|.++
T Consensus        98 ~~~~~~l~~la~lGlillmFliGLE~Dl~~lr~~~k~a~~ia~~~~ilpf~lg~~~~~~l~~~~~~~~~~~~~l~~g~al  177 (832)
T PLN03159         98 LRSVMVLETMANLGLLYFLFLVGVEMDISVIRRTGKKALAIAIAGMALPFCIGLAFSFIFHQVSRNVHQGTFILFLGVAL  177 (832)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHH
Confidence               24699999999999999999999999999999999999999999999888776654432      124578999999


Q ss_pred             hhccHHHHHHHHhhccccCCchhHHHHHHHHHhhHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 036333          213 SMSSTAVVLKFLMEKNSTNALHGQVTIGTLILQDCAVGLLFALLPVLGGTSGVLQGMISITKLLVVLIAFLGILSILSRT  292 (527)
Q Consensus       213 s~TS~~vv~~~L~e~~~~~s~~g~l~l~~s~l~D~~~~~l~al~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~r~  292 (527)
                      |.||+|+++++|+|+|+++++.||+++++++++|+++|++++++..+......  . ....+.++..+++++++.++.|+
T Consensus       178 S~Ts~pVv~riL~Elkll~s~~GrlaLsaavv~Dl~~~ilLav~~~l~~~~~~--~-~~~l~~~l~~~~f~~~~~~v~r~  254 (832)
T PLN03159        178 SVTAFPVLARILAEIKLINTELGRIAMSAALVNDMCAWILLALAIALAENDST--S-LASLWVLLSSVAFVLFCFYVVRP  254 (832)
T ss_pred             HHhhHHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--c-hhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998877665432211  1 11223444445666666777777


Q ss_pred             hHHHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHhcCCcchhhHHHhHHhH-HHHHH
Q 036333          293 CVPWLLKLMTSLSSQFCLVQTNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTDLAQHTLEQIEPI-RNMFA  371 (527)
Q Consensus       293 ~~~~l~~~~~~~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~lg~s~~lgafvaGl~l~~~~~~~~l~~~l~~~-~~~f~  371 (527)
                      +++|+.|+    .+++  ++.+|.++.+++++++++++++|.+|+|+++|||++|+++|+.+.++++.++++++ .++|+
T Consensus       255 ~~~~~~r~----~~~~--~~~~e~~v~~il~~vl~~a~lae~~Gl~~ilGAFlaGl~lp~~~~~~~l~ekle~~~~~lfl  328 (832)
T PLN03159        255 GIWWIIRR----TPEG--ETFSEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPNGPLGVTLIEKLEDFVSGLLL  328 (832)
T ss_pred             HHHHHHHh----CcCC--CCcccchhHHHHHHHHHHHHHHHHhCccHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHHH
Confidence            77776544    3322  35678888888888899999999999999999999999999988889999999998 58999


Q ss_pred             HHHHHHhccccchhhhhHH--HHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHhhHHHHHHHHHHHHhhCCC
Q 036333          372 ALFLASIGMLIHVHFLWNH--IDILLASVILVITIKTIIVFTVVKGFGYNNKTSVLVGMSLAQIGEFAFVLLSRSSNLHL  449 (527)
Q Consensus       372 plFF~~iGl~i~~~~l~~~--~~~~l~l~~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~rG~~~lvl~~~a~~~g~  449 (527)
                      |+||+++|+++|+..+.+.  |..+++++++.+++|+++++++++++|+|++|++.+|++|++||+++++++..+.+.|+
T Consensus       329 PlFFv~vGl~idl~~l~~~~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~eal~lG~lm~~kG~~~Lii~~ig~~~gv  408 (832)
T PLN03159        329 PLFFAISGLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFREGITLGFLMNTKGLVEMIVLNVGRDQEV  408 (832)
T ss_pred             HHHHHHhhheeeHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhcccHHHHHHHHHHHhcCc
Confidence            9999999999999887643  33445556677899999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHHHH-HHhhhhhHHHHhhh-hhhhhhhhhhhhc
Q 036333          450 VEGKLYLLLLGTT-ALSLVTTPLLFKLI-PGVVHLGVLLRWF  489 (527)
Q Consensus       450 i~~~~~~~lv~~~-~ls~l~~p~l~~~~-p~~~~~~~~~r~~  489 (527)
                      ++++.|+++++++ ++|.+++|++.++| |+++|..|++|..
T Consensus       409 i~~~~f~~lVl~avl~T~i~~Plv~~ly~p~rk~~~~~~r~i  450 (832)
T PLN03159        409 LDDESFAVMVLVAVAMTALITPVVTVVYRPARRLVGYKRRTI  450 (832)
T ss_pred             cCchhhhHHHHHHHHHHHHHHHHHHHHhCHHhhhcccccccc
Confidence            9999999998765 57999999999999 8888888776654

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional Back     alignment and domain information
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional Back     alignment and domain information
>PRK10669 putative cation:proton antiport protein; Provisional Back     alignment and domain information
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK05326 potassium/proton antiporter; Reviewed Back     alignment and domain information
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family Back     alignment and domain information
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ] Back     alignment and domain information
>TIGR00844 c_cpa1 na(+)/h(+) antiporter Back     alignment and domain information
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form Back     alignment and domain information
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3 Back     alignment and domain information
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional Back     alignment and domain information
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00773 NhaA Na+/H+ antiporter NhaA Back     alignment and domain information
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional Back     alignment and domain information
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional Back     alignment and domain information
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed Back     alignment and domain information
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed Back     alignment and domain information
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional Back     alignment and domain information
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH Back     alignment and domain information
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species Back     alignment and domain information
>PRK12460 2-keto-3-deoxygluconate permease; Provisional Back     alignment and domain information
>COG0385 Predicted Na+-dependent transporter [General function prediction only] Back     alignment and domain information
>TIGR00698 conserved hypothetical integral membrane protein Back     alignment and domain information
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins Back     alignment and domain information
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi Back     alignment and domain information
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate Back     alignment and domain information
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional Back     alignment and domain information
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional Back     alignment and domain information
>COG2855 Predicted membrane protein [Function unknown] Back     alignment and domain information
>TIGR00210 gltS sodium--glutamate symport carrier (gltS) Back     alignment and domain information
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family Back     alignment and domain information
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism] Back     alignment and domain information
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137) Back     alignment and domain information
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments Back     alignment and domain information
>PRK10669 putative cation:proton antiport protein; Provisional Back     alignment and domain information
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins Back     alignment and domain information
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN03159 cation/H(+) antiporter 15; Provisional Back     alignment and domain information
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes Back     alignment and domain information
>PRK05326 potassium/proton antiporter; Reviewed Back     alignment and domain information
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter Back     alignment and domain information
>TIGR00832 acr3 arsenical-resistance protein Back     alignment and domain information
>TIGR00783 ccs citrate carrier protein, CCS family Back     alignment and domain information
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication Back     alignment and domain information
>TIGR00698 conserved hypothetical integral membrane protein Back     alignment and domain information
>TIGR00841 bass bile acid transporter Back     alignment and domain information
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters Back     alignment and domain information
>PRK03818 putative transporter; Validated Back     alignment and domain information
>COG2855 Predicted membrane protein [Function unknown] Back     alignment and domain information
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter Back     alignment and domain information
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter Back     alignment and domain information
>TIGR00844 c_cpa1 na(+)/h(+) antiporter Back     alignment and domain information
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form Back     alignment and domain information
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase Back     alignment and domain information
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom Back     alignment and domain information
>COG2985 Predicted permease [General function prediction only] Back     alignment and domain information
>COG3493 CitS Na+/citrate symporter [Energy production and conversion] Back     alignment and domain information
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate Back     alignment and domain information
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase Back     alignment and domain information
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism] Back     alignment and domain information
>PRK04972 putative transporter; Provisional Back     alignment and domain information
>PRK05274 2-keto-3-deoxygluconate permease; Provisional Back     alignment and domain information
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments Back     alignment and domain information
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain Back     alignment and domain information
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication Back     alignment and domain information
>PRK04972 putative transporter; Provisional Back     alignment and domain information
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only] Back     alignment and domain information
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species Back     alignment and domain information
>PRK12460 2-keto-3-deoxygluconate permease; Provisional Back     alignment and domain information
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family Back     alignment and domain information
>COG2431 Predicted membrane protein [Function unknown] Back     alignment and domain information
>TIGR00210 gltS sodium--glutamate symport carrier (gltS) Back     alignment and domain information
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ] Back     alignment and domain information
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00808 malonate_madM malonate transporter, MadM subunit Back     alignment and domain information
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea Back     alignment and domain information
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family Back     alignment and domain information
>PRK09903 putative transporter YfdV; Provisional Back     alignment and domain information
>PRK03818 putative transporter; Validated Back     alignment and domain information
>PRK04125 murein hydrolase regulator LrgA; Provisional Back     alignment and domain information
>TIGR00783 ccs citrate carrier protein, CCS family Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query527
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 45.2 bits (106), Expect = 6e-05
 Identities = 55/391 (14%), Positives = 99/391 (25%), Gaps = 118/391 (30%)

Query: 40  KNDTKEEKSFKLNDVFNLDNDNGAEETPTLIDRKDNVFIISNFKSKYPVLQLDLRLISDL 99
            +      + +L        +   ++    + R +  F++S  K++     +  R+  + 
Sbjct: 56  MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115

Query: 100 VVVIVFATCGGIAFACAGQPVITGYLLAGSIIGPGGFNFVSEMVQVETVAQFGVIFLLFA 159
              +                V   Y              VS +     + Q        A
Sbjct: 116 RDRL-----------YNDNQVFAKY-------------NVSRLQPYLKLRQ--------A 143

Query: 160 LGLEFSTTKLRVVRAVAVLGGLLQIFLFMFLCGITAL--------LFGIKLSEGIFVGTF 211
           L       +LR  + V + G        +   G T +            K+   IF    
Sbjct: 144 L------LELRPAKNVLIDG--------VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL 189

Query: 212 LSMSSTAVVLKFLMEKNSTNALHGQVTIGTLILQDCAVGLLFALLPVLGGTSGVLQGMIS 271
            + +S   VL+ L        L  Q+        D               +S +   + S
Sbjct: 190 KNCNSPETVLEML------QKLLYQIDPNWTSRSD--------------HSSNIKLRIHS 229

Query: 272 ITKLLVVLIA---FLGILSILSRTCVPWLLKLMTSLSSQF---C--LVQTNELYQLASVA 323
           I   L  L+    +   L +L                  F   C  L+ T        V 
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNAKAWNA-------FNLSCKILLTTRF----KQVT 278

Query: 324 FCLLVAWCSD------KLGL----SLELGSFAAGVMISTTDLAQHTLEQIEPIRNMFAAL 373
             L  A  +        + L       L      +     DL    +    P        
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSL--LLKYLDCRPQDLP-REVLTTNP-------R 328

Query: 374 FLASIGMLIHVHFL----WNHIDIL-LASVI 399
            L+ I   I         W H++   L ++I
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTII 359

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query527
1zcd_A388 Na(+)/H(+) antiporter 1; membrane protein; 3.45A { 99.9
3zux_A332 Transporter, ASBTNM; transport protein, membrane p 98.23
3zux_A 332 Transporter, ASBTNM; transport protein, membrane p 83.26
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A Back     alignment and structure
Probab=99.90  E-value=1.4e-23  Score=216.55  Aligned_cols=298  Identities=15%  Similarity=0.071  Sum_probs=217.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCchHH----HHhhh--HHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhccH
Q 036333          144 QVETVAQFGVIFLLFALGLEFSTTKL----RVVRA--VAVLGGLLQIFLFMFLCGITALLFGIKLSEGIFVGTFLSMSST  217 (527)
Q Consensus       144 ~~~~l~~lgl~~llF~~Gle~d~~~l----r~~~~--~~~~~~~~~~~l~~~~~~~~~~~lg~~~~~al~lg~~ls~TS~  217 (527)
                      ..+-+.+-.+.+++|.+|+|+|.+.+    ++.+|  .....++.++++|+++.    ..++....++..-..+...|+.
T Consensus        59 l~~windglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~iy----~~~~~~~~~~~~gw~ip~ATdI  134 (388)
T 1zcd_A           59 MLLWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALLY----LAFNYADPITREGWAIPAATDI  134 (388)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHH----GGGCCSSTTHHHHTSSSSCCCH
T ss_pred             HHHHHhhHhHHHHHHHHHHHhhHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHH----HHHhcCChhhhhhhHHHHHHHH
Confidence            45667888999999999999999877    55555  46778889999998762    3455555667777777888999


Q ss_pred             HHHHHHHhhccccC-CchhHHHHHHHHHhhHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 036333          218 AVVLKFLMEKNSTN-ALHGQVTIGTLILQDCAVGLLFALLPVLGGTSGVLQGMISITKLLVVLIAFLGILSILSRTCVPW  296 (527)
Q Consensus       218 ~vv~~~L~e~~~~~-s~~g~l~l~~s~l~D~~~~~l~al~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~r~~~~~  296 (527)
                      +....++...+... +..++.+++.+++||+.+|++++++..   .+.   +...+   .. .++++++...+       
T Consensus       135 Afal~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAvfyt---~~~---~~~~l---~~-~~~~~~~~~~l-------  197 (388)
T 1zcd_A          135 AFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFYT---NDL---SMASL---GV-AAVAIAVLAVL-------  197 (388)
T ss_dssp             HHHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHHHSC---CCC---CHHHH---HH-HHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHc---CCc---cHHHH---HH-HHHHHHHHHHH-------
Confidence            99999999977554 455699999999999999999887632   111   11111   11 11111111111       


Q ss_pred             HHHHHHhhhhccccccchhHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHhcCC-----cchhhHHHhHHhHH-HHH
Q 036333          297 LLKLMTSLSSQFCLVQTNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTT-----DLAQHTLEQIEPIR-NMF  370 (527)
Q Consensus       297 l~~~~~~~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~lg~s~~lgafvaGl~l~~~-----~~~~~l~~~l~~~~-~~f  370 (527)
                           .|.       ..++...+..+  .+..++.++..|+|+.+|+|++|+++|+.     +..++++++++++. .++
T Consensus       198 -----~r~-------~v~~~~~y~~l--gl~~w~~~~~sGvHatigg~l~Gl~ip~~~~~~~~~~~~le~~l~p~v~~~i  263 (388)
T 1zcd_A          198 -----NLC-------GARRTGVYILV--GVVLWTAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAKRLEHVLHPWVAYLI  263 (388)
T ss_dssp             -----HHT-------TCCCTHHHHHH--HHHHHHHTTTSHHHHHHHHHHHHHHSCCCGGGSSCHHHHHHHHHHHHHHHTH
T ss_pred             -----HHh-------cchhHHHHHHH--HHHHHHHHHHhCccHHHHHHHHHHhccCCCccCCCHHHHHHHHHHHHHHHHH
Confidence                 111       11222222222  33557788999999999999999999974     34688999999997 588


Q ss_pred             HHHH-HHHhccccchhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHhhc----------CCChHHHHHHHHHHhhHHHHHH
Q 036333          371 AALF-LASIGMLIHVHFLWNH-IDILLASVILVITIKTIIVFTVVKGF----------GYNNKTSVLVGMSLAQIGEFAF  438 (527)
Q Consensus       371 ~plF-F~~iGl~i~~~~l~~~-~~~~l~l~~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lgl~l~~rG~~~l  438 (527)
                      +|+| |+..|.++|....... ....+.+.+..+++|+++++..++..          |++++|...+|+.++.++++++
T Consensus       264 lPlFaFanaGv~l~~~~~~~l~~~~~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~~~~vg~L~gigftmsL  343 (388)
T 1zcd_A          264 LPLFAFANAGVSLQGVTLDGLTSILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMVVGILCGIGFTMSI  343 (388)
T ss_dssp             HHHHHHHHCCCCCSSSCCCTHHHHSSTTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGGGTTHHHHTTCCHHHHH
T ss_pred             HHHHHHHhcCeeecccchhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHHHHHHHHHhccchHHHH
Confidence            9999 9999999997422111 11223444556889999955555554          8999999999999999999999


Q ss_pred             HHHHHHhhCCC--CcHHHHHHHHHHHHHhhhhhHHHHhhh
Q 036333          439 VLLSRSSNLHL--VEGKLYLLLLGTTALSLVTTPLLFKLI  476 (527)
Q Consensus       439 vl~~~a~~~g~--i~~~~~~~lv~~~~ls~l~~p~l~~~~  476 (527)
                      ++++.+.+.+.  ..++.+..++..+++|++++|++.|+.
T Consensus       344 ~Ia~laf~~~~~~~~~~ak~~il~~s~~s~i~g~~~L~~~  383 (388)
T 1zcd_A          344 FIASLAFGSVDPELINWAKLGILVGSISSAVIGYSWLRVR  383 (388)
T ss_dssp             HHHHHHSTTSSCSSHHHHHHHHHHHHHTTTSTTTGGGTTT
T ss_pred             HHHHHhccCCchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999998876  367779999999999999999887754
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A* Back     alignment and structure
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00