Citrus Sinensis ID: 036354

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------
Protein Sequence
HEIATFFAVSFEAKYSAMPAFKFFVIANAIVSIYGFLVLFLPLDDLAIGCCFDMLFTMLLTSSISAALTIAQVGKKENSSTGWLSMCH
Secondary Structure (PSIPRED)
ccccccEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHccccccHEEHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccc
Coil and Loop (DISEMBL)
HEIATFFAVSFeakysampafKFFVIANAIVSIYGFLVLflplddlaigCCFDMLFTMLLTSSISAALTIAQVgkkensstgwlsmch
Flexible Loop (DISEMBL)
HEIATFFAVSFEAKYSAMPAFKFFVIANAIVSIYGFLVLFLPLDDLAIGCCFDMLFTMLLTSSISAALTIAQVgkkensstgwlsmch
Low Complexity Region (SEG)
HEIATFFAVSFEAKYSAMPAFKFFVIANAIVSIYGFLVLFLPLDDLAIGCCFDMLFTMLLTSSISAALTIAQVGKKENSSTGWLSMCH
Disordered region (IsUnstruct)
**IATFFAVSFEAKYSAMPAFKFFVIANAIVSIYGFLVLFLPLDDLAIGCCFDMLFTMLLTSSISAALTIAQV***************
Disordered Region (DISOPRED)
**IATFFAVSFEAKYSAMPAFKFFVIANAIVSIYGFLVLFLPLDDLAIGCCFDMLFTMLLTSSISAALTIAQVGKKENSSTGWLSMCH
Disordered Region (DISEMBL)
HEIATFFAVSFEAKYSAMPAFKFFVIANAIVSIYGFLVLFLPLDDLAIGCCFDMLFTMLLTSSISAALTIAQV***************
Disordered Region (DISPRO)
**IATFFAVSFEAKYSAMPAFKFFVIANAIVSIYGFLVLFLPLDDLAIGCCFDMLFTMLLTSSISAALTIAQVGKKENSSTGW*SMC*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
HEIATFFAVSFEAKYSAMPAFKFFVIANAIVSIYGFLVLFLPLDDLAIGCCFDMLFTMLLTSSISAALTIAQVGKKENSSTGWLSMCH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	88	2.2.26 [Sep-21-2011]
B9N5U6	171	CASP-like protein POPTRDR	yes	no	0.988	0.508	0.629	2e-25
B9N2D0	162	CASP-like protein POPTRDR	yes	no	0.988	0.537	0.629	1e-24
D7M2M8	164	CASP-like protein ARALYDR	N/A	no	0.988	0.530	0.617	4e-24
B9RW00	163	CASP-like protein RCOM_11	N/A	no	0.988	0.533	0.606	4e-24
Q9ZT81	164	CASP-like protein At4g035	yes	no	0.988	0.530	0.595	2e-23
D7KCH2	164	CASP-like protein ARALYDR	N/A	no	0.988	0.530	0.550	3e-21
Q9LR57	164	CASP-like protein At1g037	no	no	0.988	0.530	0.550	3e-21
A7PJ32	161	CASP-like protein VIT_12s	yes	no	0.965	0.527	0.593	8e-20
B9RZ92	164	CASP-like protein RCOM_09	N/A	no	0.988	0.530	0.528	3e-17
B9N3F4	163	CASP-like protein POPTRDR	yes	no	0.988	0.533	0.483	2e-14

>sp|B9N5U6|CSPL4_POPTR CASP-like protein POPTRDRAFT_270504 OS=Populus trichocarpa GN=POPTRDRAFT_270504 PE=3 SV=2

 Score =  114 bits (284), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 56/89 (62%), Positives = 69/89 (77%), Gaps = 2/89 (2%)

Query: 1   HEIATFFAVSFEAKYSAMPAFKFFVIANAIVSIYGFLVLFLPLDD--LAIGCCFDMLFTM 58
           HE  +FFA+S+EAKYS  PAFK+FVIANAIV++YGFL LF+P +     +    D++FTM
Sbjct: 31  HEKGSFFALSYEAKYSDTPAFKYFVIANAIVTVYGFLALFIPSESPLWRLVLALDLVFTM 90

Query: 59  LLTSSISAALTIAQVGKKENSSTGWLSMC 87
           LL SSISAAL +AQVGKK NSS GWL +C
Sbjct: 91  LLISSISAALAVAQVGKKGNSSAGWLPVC 119

Populus trichocarpa (taxid: 3694)

>sp|B9N2D0|CSPLK_POPTR CASP-like protein POPTRDRAFT_670582 OS=Populus trichocarpa GN=POPTRDRAFT_670582 PE=2 SV=1

 Score =  111 bits (278), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 56/89 (62%), Positives = 66/89 (74%), Gaps = 2/89 (2%)

Query: 1   HEIATFFAVSFEAKYSAMPAFKFFVIANAIVSIYGFLVLFLPLDD--LAIGCCFDMLFTM 58
           HE  TFFAVS+EAKY+  PAFK+FVIANAIV++YGFLVLF P       +    D++FTM
Sbjct: 31  HEKGTFFAVSYEAKYTDTPAFKYFVIANAIVTVYGFLVLFHPPGSPLWRLVLALDLVFTM 90

Query: 59  LLTSSISAALTIAQVGKKENSSTGWLSMC 87
           LL SSISAAL +AQVGK  NS  GWL +C
Sbjct: 91  LLISSISAALAVAQVGKNGNSRAGWLPVC 119

Populus trichocarpa (taxid: 3694)

>sp|D7M2M8|CSPLF_ARALL CASP-like protein ARALYDRAFT_327471 OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_327471 PE=3 SV=1

 Score =  109 bits (273), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 55/89 (61%), Positives = 68/89 (76%), Gaps = 2/89 (2%)

Query: 1   HEIATFFAVSFEAKYSAMPAFKFFVIANAIVSIYGFLVLFLPLDDL--AIGCCFDMLFTM 58
            E A+FFAVS EAKY+ M AFK+FVIANA+VS+Y FLVLFLP + L        D++ TM
Sbjct: 32  RERASFFAVSLEAKYTDMAAFKYFVIANAVVSVYSFLVLFLPKESLLWKFVVVLDLVMTM 91

Query: 59  LLTSSISAALTIAQVGKKENSSTGWLSMC 87
           LLTSS+SAAL +AQVGKK N++ GWL +C
Sbjct: 92  LLTSSLSAALAVAQVGKKGNANAGWLPIC 120

Arabidopsis lyrata subsp. lyrata (taxid: 81972)

>sp|B9RW00|CSPL6_RICCO CASP-like protein RCOM_1174750 OS=Ricinus communis GN=RCOM_1174750 PE=2 SV=1

 Score =  109 bits (273), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 54/89 (60%), Positives = 67/89 (75%), Gaps = 2/89 (2%)

Query: 1   HEIATFFAVSFEAKYSAMPAFKFFVIANAIVSIYGFLVLFLPLDDL--AIGCCFDMLFTM 58
           HE  +FF VS+EAKYS  PAFK+FVI NAIV++Y FL LFLP + L   +    D++FTM
Sbjct: 31  HESGSFFTVSYEAKYSDTPAFKYFVIVNAIVTVYSFLALFLPSESLLWRLVIVTDVVFTM 90

Query: 59  LLTSSISAALTIAQVGKKENSSTGWLSMC 87
           L+TSSISAA+ +AQVGKK NS  GWL +C
Sbjct: 91  LVTSSISAAVAVAQVGKKGNSHAGWLPIC 119

Ricinus communis (taxid: 3988)

>sp|Q9ZT81|CSPLK_ARATH CASP-like protein At4g03540 OS=Arabidopsis thaliana GN=At4g03540 PE=2 SV=1

 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 53/89 (59%), Positives = 67/89 (75%), Gaps = 2/89 (2%)

Query: 1   HEIATFFAVSFEAKYSAMPAFKFFVIANAIVSIYGFLVLFLPLDDL--AIGCCFDMLFTM 58
            E A+F A+S EAKY+ M AFK+FVIANA+VS+Y FLVLFLP + L        D++ TM
Sbjct: 32  RERASFLAISLEAKYTDMAAFKYFVIANAVVSVYSFLVLFLPKESLLWKFVVVLDLVMTM 91

Query: 59  LLTSSISAALTIAQVGKKENSSTGWLSMC 87
           LLTSS+SAAL +AQVGKK N++ GWL +C
Sbjct: 92  LLTSSLSAALAVAQVGKKGNANAGWLPIC 120

Arabidopsis thaliana (taxid: 3702)

>sp|D7KCH2|CSPLE_ARALL CASP-like protein ARALYDRAFT_470341 OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_470341 PE=3 SV=1

 Score =  100 bits (249), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 49/89 (55%), Positives = 66/89 (74%), Gaps = 2/89 (2%)

Query: 1   HEIATFFAVSFEAKYSAMPAFKFFVIANAIVSIYGFLVLFLPLDDL--AIGCCFDMLFTM 58
            E ++FF +S  AKYS + AFK+FVIANAIV++Y FLVLFLP + L        D++ TM
Sbjct: 32  RERSSFFVISLVAKYSDLAAFKYFVIANAIVTVYSFLVLFLPKESLLWKFVVVLDLMVTM 91

Query: 59  LLTSSISAALTIAQVGKKENSSTGWLSMC 87
           LLTSS+SAA+ +AQVGK+ N++ GWL +C
Sbjct: 92  LLTSSLSAAVAVAQVGKRGNANAGWLPIC 120

Arabidopsis lyrata subsp. lyrata (taxid: 81972)

>sp|Q9LR57|CSPL1_ARATH CASP-like protein At1g03700 OS=Arabidopsis thaliana GN=At1g03700 PE=2 SV=1

 Score =  100 bits (249), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 49/89 (55%), Positives = 66/89 (74%), Gaps = 2/89 (2%)

Query: 1   HEIATFFAVSFEAKYSAMPAFKFFVIANAIVSIYGFLVLFLPLDDL--AIGCCFDMLFTM 58
            E ++FF +S  AKYS + AFK+FVIANAIV++Y FLVLFLP + L        D++ TM
Sbjct: 32  RERSSFFVISLVAKYSDLAAFKYFVIANAIVTVYSFLVLFLPKESLLWKFVVVLDLMVTM 91

Query: 59  LLTSSISAALTIAQVGKKENSSTGWLSMC 87
           LLTSS+SAA+ +AQVGK+ N++ GWL +C
Sbjct: 92  LLTSSLSAAVAVAQVGKRGNANAGWLPIC 120

Arabidopsis thaliana (taxid: 3702)

>sp|A7PJ32|CSPL2_VITVI CASP-like protein VIT_12s0028g03760 OS=Vitis vinifera GN=VIT_12s0028g03760 PE=2 SV=1

 Score = 95.5 bits (236), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 54/91 (59%), Positives = 63/91 (69%), Gaps = 6/91 (6%)

Query: 1   HEIATFFAVSFEAKYSAMPAFKFFVIANAIVSIYGFLVLFLP----LDDLAIGCCFDMLF 56
           HE  T+ ++S EAKYS  PAFK+FVIANAI S Y  L+LFLP    L  L I    D++ 
Sbjct: 32  HERTTYLSLSIEAKYSHTPAFKYFVIANAIGSAYSLLLLFLPSHGSLWPLVIAS--DVVI 89

Query: 57  TMLLTSSISAALTIAQVGKKENSSTGWLSMC 87
           TM LTSSISAAL+IA VGKK NS  GWL +C
Sbjct: 90  TMFLTSSISAALSIAYVGKKGNSYAGWLPIC 120

Vitis vinifera (taxid: 29760)

>sp|B9RZ92|CSPL2_RICCO CASP-like protein RCOM_0936380 OS=Ricinus communis GN=RCOM_0936380 PE=3 SV=1

 Score = 87.0 bits (214), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 47/89 (52%), Positives = 59/89 (66%), Gaps = 2/89 (2%)

Query: 1   HEIATFFAVSFEAKYSAMPAFKFFVIANAIVSIYGFLVLFLPLDDL--AIGCCFDMLFTM 58
           H+ A    ++F AKY+  PAFK+FVIA  I S+Y  +V+FL    L   +    DM+ T+
Sbjct: 32  HDSAIVLNLTFSAKYNNTPAFKYFVIAEGIASVYTIIVIFLWSKGLLGRLIVILDMVTTV 91

Query: 59  LLTSSISAALTIAQVGKKENSSTGWLSMC 87
           LLTSSISAAL IAQVGKK NS  GWL +C
Sbjct: 92  LLTSSISAALAIAQVGKKGNSHAGWLPVC 120

Ricinus communis (taxid: 3988)

>sp|B9N3F4|CSPL9_POPTR CASP-like protein POPTRDRAFT_810994 OS=Populus trichocarpa GN=POPTRDRAFT_810994 PE=3 SV=1

 Score = 78.2 bits (191), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/89 (48%), Positives = 54/89 (60%), Gaps = 2/89 (2%)

Query: 1   HEIATFFAVSFEAKYSAMPAFKFFVIANAIVSIYGFLVLFLPLDDL--AIGCCFDMLFTM 58
           H+ A    ++F AKYS  PAFK+ VI  AI   Y  + + L    L   +    DM+ T+
Sbjct: 31  HDSAQVLNLTFTAKYSNTPAFKYLVIGEAIAGGYTVISILLSFKGLFWRLIVILDMVTTV 90

Query: 59  LLTSSISAALTIAQVGKKENSSTGWLSMC 87
           LLTSSISAAL IAQVGKK N+  GWL +C
Sbjct: 91  LLTSSISAALAIAQVGKKGNTHAGWLPIC 119

Populus trichocarpa (taxid: 3694)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	88
224121696	159	predicted protein [Populus trichocarpa]	0.988	0.547	0.629	9e-24
341958683	171	RecName: Full=CASP-like protein POPTRDRA	0.988	0.508	0.629	1e-23
449438494	164	PREDICTED: CASP-like protein RCOM_117475	0.988	0.530	0.606	2e-23
224127057	162	predicted protein [Populus trichocarpa]	0.988	0.537	0.629	4e-23
449479160	164	PREDICTED: CASP-like protein RCOM_117475	0.988	0.530	0.595	4e-23
297813957	164	integral membrane family protein [Arabid	0.988	0.530	0.617	2e-22
255553757	163	conserved hypothetical protein [Ricinus	0.988	0.533	0.606	2e-22
356542938	163	PREDICTED: CASP-like protein RCOM_117475	0.988	0.533	0.595	4e-22
15236329	164	uncharacterized protein [Arabidopsis tha	0.988	0.530	0.595	9e-22
356517606	163	PREDICTED: CASP-like protein RCOM_117475	0.988	0.533	0.584	1e-21

>gi|224121696|ref|XP_002330630.1| predicted protein [Populus trichocarpa] gi|222872234|gb|EEF09365.1| predicted protein [Populus trichocarpa]

 Score =  114 bits (284), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 56/89 (62%), Positives = 69/89 (77%), Gaps = 2/89 (2%)

Query: 1   HEIATFFAVSFEAKYSAMPAFKFFVIANAIVSIYGFLVLFLPLDD--LAIGCCFDMLFTM 58
           HE  +FFA+S+EAKYS  PAFK+FVIANAIV++YGFL LF+P +     +    D++FTM
Sbjct: 31  HEKGSFFALSYEAKYSDTPAFKYFVIANAIVTVYGFLALFIPSESPLWRLVLALDLVFTM 90

Query: 59  LLTSSISAALTIAQVGKKENSSTGWLSMC 87
           LL SSISAAL +AQVGKK NSS GWL +C
Sbjct: 91  LLISSISAALAVAQVGKKGNSSAGWLPVC 119

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|341958683|sp|B9N5U6.2|CSPL4_POPTR RecName: Full=CASP-like protein POPTRDRAFT_270504

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 56/89 (62%), Positives = 69/89 (77%), Gaps = 2/89 (2%)

Query: 1   HEIATFFAVSFEAKYSAMPAFKFFVIANAIVSIYGFLVLFLPLDD--LAIGCCFDMLFTM 58
           HE  +FFA+S+EAKYS  PAFK+FVIANAIV++YGFL LF+P +     +    D++FTM
Sbjct: 31  HEKGSFFALSYEAKYSDTPAFKYFVIANAIVTVYGFLALFIPSESPLWRLVLALDLVFTM 90

Query: 59  LLTSSISAALTIAQVGKKENSSTGWLSMC 87
           LL SSISAAL +AQVGKK NSS GWL +C
Sbjct: 91  LLISSISAALAVAQVGKKGNSSAGWLPVC 119

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438494|ref|XP_004137023.1| PREDICTED: CASP-like protein RCOM_1174750-like [Cucumis sativus]

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 54/89 (60%), Positives = 69/89 (77%), Gaps = 2/89 (2%)

Query: 1   HEIATFFAVSFEAKYSAMPAFKFFVIANAIVSIYGFLVLFLPLDDL--AIGCCFDMLFTM 58
           HE A FF +SFEAKY+  P+FK+FVIAN++ S+YGFLVLFLP + L   +  CFD++ TM
Sbjct: 32  HEEARFFTLSFEAKYTHTPSFKYFVIANSVASVYGFLVLFLPAESLLWRLVLCFDVIMTM 91

Query: 59  LLTSSISAALTIAQVGKKENSSTGWLSMC 87
           LLTSSI+AAL +AQ+GK  NS  GWL +C
Sbjct: 92  LLTSSIAAALAVAQIGKDGNSYAGWLPIC 120

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127057|ref|XP_002329375.1| predicted protein [Populus trichocarpa] gi|288559183|sp|B9N2D0.1|CSPLK_POPTR RecName: Full=CASP-like protein POPTRDRAFT_670582 gi|222870425|gb|EEF07556.1| predicted protein [Populus trichocarpa]

 Score =  111 bits (278), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 56/89 (62%), Positives = 66/89 (74%), Gaps = 2/89 (2%)

Query: 1   HEIATFFAVSFEAKYSAMPAFKFFVIANAIVSIYGFLVLFLPLDD--LAIGCCFDMLFTM 58
           HE  TFFAVS+EAKY+  PAFK+FVIANAIV++YGFLVLF P       +    D++FTM
Sbjct: 31  HEKGTFFAVSYEAKYTDTPAFKYFVIANAIVTVYGFLVLFHPPGSPLWRLVLALDLVFTM 90

Query: 59  LLTSSISAALTIAQVGKKENSSTGWLSMC 87
           LL SSISAAL +AQVGK  NS  GWL +C
Sbjct: 91  LLISSISAALAVAQVGKNGNSRAGWLPVC 119

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449479160|ref|XP_004155522.1| PREDICTED: CASP-like protein RCOM_1174750-like [Cucumis sativus]

 Score =  111 bits (278), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 53/89 (59%), Positives = 69/89 (77%), Gaps = 2/89 (2%)

Query: 1   HEIATFFAVSFEAKYSAMPAFKFFVIANAIVSIYGFLVLFLPLDDL--AIGCCFDMLFTM 58
           HE A FF +SFEAKY+  P+FK+FVIAN++ S+YGFLVLFLP + L   +  CFD++ TM
Sbjct: 32  HEEARFFTLSFEAKYTHTPSFKYFVIANSVASVYGFLVLFLPAESLLWRLVLCFDVIMTM 91

Query: 59  LLTSSISAALTIAQVGKKENSSTGWLSMC 87
           LLTSS++AAL +AQ+GK  NS  GWL +C
Sbjct: 92  LLTSSMAAALAVAQIGKDGNSYAGWLPIC 120

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297813957|ref|XP_002874862.1| integral membrane family protein [Arabidopsis lyrata subsp. lyrata] gi|341958563|sp|D7M2M8.1|CSPLF_ARALL RecName: Full=CASP-like protein ARALYDRAFT_327471 gi|297320699|gb|EFH51121.1| integral membrane family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  109 bits (273), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 55/89 (61%), Positives = 68/89 (76%), Gaps = 2/89 (2%)

Query: 1   HEIATFFAVSFEAKYSAMPAFKFFVIANAIVSIYGFLVLFLPLDDL--AIGCCFDMLFTM 58
            E A+FFAVS EAKY+ M AFK+FVIANA+VS+Y FLVLFLP + L        D++ TM
Sbjct: 32  RERASFFAVSLEAKYTDMAAFKYFVIANAVVSVYSFLVLFLPKESLLWKFVVVLDLVMTM 91

Query: 59  LLTSSISAALTIAQVGKKENSSTGWLSMC 87
           LLTSS+SAAL +AQVGKK N++ GWL +C
Sbjct: 92  LLTSSLSAALAVAQVGKKGNANAGWLPIC 120

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553757|ref|XP_002517919.1| conserved hypothetical protein [Ricinus communis] gi|288559178|sp|B9RW00.1|CSPL6_RICCO RecName: Full=CASP-like protein RCOM_1174750 gi|223542901|gb|EEF44437.1| conserved hypothetical protein [Ricinus communis]

 Score =  109 bits (273), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 54/89 (60%), Positives = 67/89 (75%), Gaps = 2/89 (2%)

Query: 1   HEIATFFAVSFEAKYSAMPAFKFFVIANAIVSIYGFLVLFLPLDDL--AIGCCFDMLFTM 58
           HE  +FF VS+EAKYS  PAFK+FVI NAIV++Y FL LFLP + L   +    D++FTM
Sbjct: 31  HESGSFFTVSYEAKYSDTPAFKYFVIVNAIVTVYSFLALFLPSESLLWRLVIVTDVVFTM 90

Query: 59  LLTSSISAALTIAQVGKKENSSTGWLSMC 87
           L+TSSISAA+ +AQVGKK NS  GWL +C
Sbjct: 91  LVTSSISAAVAVAQVGKKGNSHAGWLPIC 119

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542938|ref|XP_003539921.1| PREDICTED: CASP-like protein RCOM_1174750-like [Glycine max]

 Score =  108 bits (270), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 53/89 (59%), Positives = 66/89 (74%), Gaps = 2/89 (2%)

Query: 1   HEIATFFAVSFEAKYSAMPAFKFFVIANAIVSIYGFLVLFLPLDDL--AIGCCFDMLFTM 58
           HE AT F VSFEAKY+  PAFK+FVIA +++++YGFLVLFLP   L   +    D++FTM
Sbjct: 31  HETATIFTVSFEAKYTNSPAFKYFVIAYSVITVYGFLVLFLPAKSLLWQLVVALDLVFTM 90

Query: 59  LLTSSISAALTIAQVGKKENSSTGWLSMC 87
           L+ SS SA+L IAQVGKK NS  GWL +C
Sbjct: 91  LVVSSFSASLAIAQVGKKGNSDAGWLPIC 119

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15236329|ref|NP_192263.1| uncharacterized protein [Arabidopsis thaliana] gi|75216592|sp|Q9ZT81.1|CSPLK_ARATH RecName: Full=CASP-like protein At4g03540 gi|4206208|gb|AAD11596.1| hypothetical protein [Arabidopsis thaliana] gi|4263041|gb|AAD15310.1| hypothetical protein [Arabidopsis thaliana] gi|7270677|emb|CAB77839.1| hypothetical protein [Arabidopsis thaliana] gi|332656935|gb|AEE82335.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  107 bits (267), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 53/89 (59%), Positives = 67/89 (75%), Gaps = 2/89 (2%)

Query: 1   HEIATFFAVSFEAKYSAMPAFKFFVIANAIVSIYGFLVLFLPLDDL--AIGCCFDMLFTM 58
            E A+F A+S EAKY+ M AFK+FVIANA+VS+Y FLVLFLP + L        D++ TM
Sbjct: 32  RERASFLAISLEAKYTDMAAFKYFVIANAVVSVYSFLVLFLPKESLLWKFVVVLDLVMTM 91

Query: 59  LLTSSISAALTIAQVGKKENSSTGWLSMC 87
           LLTSS+SAAL +AQVGKK N++ GWL +C
Sbjct: 92  LLTSSLSAALAVAQVGKKGNANAGWLPIC 120

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517606|ref|XP_003527478.1| PREDICTED: CASP-like protein RCOM_1174750-like [Glycine max]

 Score =  106 bits (265), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 52/89 (58%), Positives = 65/89 (73%), Gaps = 2/89 (2%)

Query: 1   HEIATFFAVSFEAKYSAMPAFKFFVIANAIVSIYGFLVLFLPLDDL--AIGCCFDMLFTM 58
           HE AT F V+FEAKY+  PAFK+FV A +++++YGFLVLFLP   L   +    D+LFTM
Sbjct: 31  HETATIFTVTFEAKYTNSPAFKYFVTAYSVITVYGFLVLFLPAKSLLWKLVVALDLLFTM 90

Query: 59  LLTSSISAALTIAQVGKKENSSTGWLSMC 87
           L+ SS SA+L IAQVGKK NS  GWL +C
Sbjct: 91  LVVSSFSASLAIAQVGKKGNSDAGWLPIC 119

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	88
TAIR|locus:2128776	164	AT4G03540 "AT4G03540" [Arabido	0.977	0.524	0.602	1e-22
TAIR|locus:2020773	164	AT1G03700 "AT1G03700" [Arabido	0.977	0.524	0.556	4.9e-21
UNIPROTKB|A2Y2B7	162	BLE3 "CASP-like protein BLE3"	0.977	0.530	0.363	6.4e-12
UNIPROTKB|Q84UT5	162	BLE3 "CASP-like protein BLE3"	0.977	0.530	0.363	6.4e-12
TAIR|locus:2150986	187	CASP5 "Casparian strip membran	0.965	0.454	0.35	2.6e-08
TAIR|locus:2117308	170	AT4G25040 "AT4G25040" [Arabido	0.977	0.505	0.358	6.8e-08
TAIR|locus:2160747	202	CASP4 "AT5G06200" [Arabidopsis	0.954	0.415	0.363	2.2e-07
TAIR|locus:2053514	206	CASP1 "AT2G36100" [Arabidopsis	0.943	0.402	0.37	3.2e-07
TAIR|locus:2163386	197	AT5G44550 [Arabidopsis thalian	0.886	0.395	0.344	3.4e-07
TAIR|locus:2080742	204	CASP2 "AT3G11550" [Arabidopsis	0.954	0.411	0.343	1.6e-06

TAIR|locus:2128776 AT4G03540 "AT4G03540" [Arabidopsis thaliana (taxid:3702)]

 Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 53/88 (60%), Positives = 67/88 (76%)

Query:     2 EIATFFAVSFEAKYSAMPAFKFFVIANAIVSIYGFLVLFLPLDDLA--IGCCFDMLFTML 59
             E A+F A+S EAKY+ M AFK+FVIANA+VS+Y FLVLFLP + L        D++ TML
Sbjct:    33 ERASFLAISLEAKYTDMAAFKYFVIANAVVSVYSFLVLFLPKESLLWKFVVVLDLVMTML 92

Query:    60 LTSSISAALTIAQVGKKENSSTGWLSMC 87
             LTSS+SAAL +AQVGKK N++ GWL +C
Sbjct:    93 LTSSLSAALAVAQVGKKGNANAGWLPIC 120

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2020773 AT1G03700 "AT1G03700" [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 49/88 (55%), Positives = 66/88 (75%)

Query:     2 EIATFFAVSFEAKYSAMPAFKFFVIANAIVSIYGFLVLFLPLDDLA--IGCCFDMLFTML 59
             E ++FF +S  AKYS + AFK+FVIANAIV++Y FLVLFLP + L        D++ TML
Sbjct:    33 ERSSFFVISLVAKYSDLAAFKYFVIANAIVTVYSFLVLFLPKESLLWKFVVVLDLMVTML 92

Query:    60 LTSSISAALTIAQVGKKENSSTGWLSMC 87
             LTSS+SAA+ +AQVGK+ N++ GWL +C
Sbjct:    93 LTSSLSAAVAVAQVGKRGNANAGWLPIC 120

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|A2Y2B7 BLE3 "CASP-like protein BLE3" [Oryza sativa Indica Group (taxid:39946)]

 Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
 Identities = 32/88 (36%), Positives = 50/88 (56%)

Query:     2 EIATFFAVSFEAKYSAMPAFKFFVIANAIVSIYGFLVLFLPLDDLA--IGCCFDMLFTML 59
             E  +FF +  EAKYS  P+F FFV+A A+ + Y  LVL +P       +    D++  M+
Sbjct:    32 ETTSFFGIQMEAKYSYTPSFIFFVVAYAVAAAYSLLVLAVPAGSALSRLALTTDVVLGMV 91

Query:    60 LTSSISAALTIAQVGKKENSSTGWLSMC 87
             L  ++++A  I+ + K  NS  GWL +C
Sbjct:    92 LAGAVASAGAISDIAKNGNSHAGWLPVC 119

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0009741 "response to brassinosteroid stimulus" evidence=ISS

GO:0009826 "unidimensional cell growth" evidence=ISS

UNIPROTKB|Q84UT5 BLE3 "CASP-like protein BLE3" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
 Identities = 32/88 (36%), Positives = 50/88 (56%)

Query:     2 EIATFFAVSFEAKYSAMPAFKFFVIANAIVSIYGFLVLFLPLDDLA--IGCCFDMLFTML 59
             E  +FF +  EAKYS  P+F FFV+A A+ + Y  LVL +P       +    D++  M+
Sbjct:    32 ETTSFFGIQMEAKYSYTPSFIFFVVAYAVAAAYSLLVLAVPAGSALSRLALTTDVVLGMV 91

Query:    60 LTSSISAALTIAQVGKKENSSTGWLSMC 87
             L  ++++A  I+ + K  NS  GWL +C
Sbjct:    92 LAGAVASAGAISDIAKNGNSHAGWLPVC 119

GO:0003824 "catalytic activity" evidence=ISS

GO:0008152 "metabolic process" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0009741 "response to brassinosteroid stimulus" evidence=IMP

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0035264 "multicellular organism growth" evidence=IMP

TAIR|locus:2150986 CASP5 "Casparian strip membrane domain protein 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 35/100 (35%), Positives = 51/100 (51%)

Query:     1 HEIATFFA--VSFEAKYSAMPAFKFFVIANAIVSIYGFLVLFLPLDDLAIG--------- 49
             HE   FF   + F+A+Y+ +PA  FFV+ANA+VS  G+L+L L L  + I          
Sbjct:    51 HETLPFFTQFIRFQAEYNDLPALTFFVVANAVVS--GYLILSLTLAFVHIVKRKTQNTRI 108

Query:    50 --CCFDMLFTMLLTSSISAALTIAQVGKKENSSTGWLSMC 87
                  D+    LLTS  S+A  I  +    N+ T W ++C
Sbjct:   109 LLIILDVAMLGLLTSGASSAAAIVYLAHNGNNKTNWFAIC 148

GO:0005739 "mitochondrion" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0007043 "cell-cell junction assembly" evidence=IDA

GO:0042545 "cell wall modification" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=ISS

GO:0048226 "Casparian strip" evidence=IDA

TAIR|locus:2117308 AT4G25040 "AT4G25040" [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
 Identities = 33/92 (35%), Positives = 48/92 (52%)

Query:     2 EIATFFAVSFEAKYSAMPAFKFFVIAN-AIVSIYGFLVLFLPLDDLAIGCCFDMLFTMLL 60
             E+A+ + ++FEAKYS   AF++ V A  A+ +   F +++  L     G  F + F  LL
Sbjct:    41 EVASVYGIAFEAKYSYSSAFRYLVYAQIAVCAATLFTLVWACLAVRRRGLVFALFFFDLL 100

Query:    61 T-----SSISAALTIAQVGKKENSSTGWLSMC 87
             T     S+ SAA     VGK  N   GWL +C
Sbjct:   101 TTLTAISAFSAAFAEGYVGKYGNKQAGWLPIC 132

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2160747 CASP4 "AT5G06200" [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 2.2e-07, P = 2.2e-07
 Identities = 36/99 (36%), Positives = 49/99 (49%)

Query:     2 EIATFFA--VSFEAKYSAMPAFKFFVIANAIVSIYGFLVLFLPLD------DLAIG---- 49
             E   FF   + FEA Y  +P F+FFV+A AIV+  G+LVL LP         LA+     
Sbjct:    68 ETLPFFTQFLQFEASYDDLPTFQFFVVAIAIVA--GYLVLSLPFSVVTIVRPLAVAPRLL 125

Query:    50 -CCFDMLFTMLLTSSISAALTIAQVGKKENSSTGWLSMC 87
                 D     L T++ SAA  I  +    N++T WL +C
Sbjct:   126 LLVLDTAALALDTAAASAAAAIVYLAHNGNTNTNWLPIC 164

GO:0005515 "protein binding" evidence=IPI

GO:0007043 "cell-cell junction assembly" evidence=IDA

GO:0042545 "cell wall modification" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=ISS

GO:0048226 "Casparian strip" evidence=IDA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2053514 CASP1 "AT2G36100" [Arabidopsis thaliana (taxid:3702)]

 Score = 118 (46.6 bits), Expect = 3.2e-07, P = 3.2e-07
 Identities = 37/100 (37%), Positives = 51/100 (51%)

Query:     2 EIATFFA--VSFEAKYSAMPAFKFFVIANAIVSIYGFLVLFLPLDDLAIG---------- 49
             E   FF   + F+A Y  +PAF++FVIA A+V+ Y  LVL LP   ++I           
Sbjct:    72 ETLPFFTQFLQFQAGYDDLPAFQYFVIAVAVVASY--LVLSLPFSIVSIVRPHAVAPRLI 129

Query:    50 --CCFDMLFTMLLTSSISAALTIAQVGKKENSSTGWLSMC 87
                C D L   L TS+ +AA +I  +    N ST WL +C
Sbjct:   130 LLIC-DTLVVTLNTSAAAAAASITYLAHNGNQSTNWLPIC 168

GO:0005515 "protein binding" evidence=IPI

GO:0007043 "cell-cell junction assembly" evidence=IDA

GO:0042545 "cell wall modification" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0048226 "Casparian strip" evidence=IDA

TAIR|locus:2163386 AT5G44550 [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 3.4e-07, P = 3.4e-07
 Identities = 30/87 (34%), Positives = 46/87 (52%)

Query:    10 SFEAKYSAMPAFKFFVIANAIVSIYGFLVLFLPLDD---------LAIGCCFDMLFTMLL 60
             +F AK+   PAF FFV+ANA+VS +  L++ L +           L      DML   L+
Sbjct:    59 TFTAKFDHTPAFVFFVVANAMVSFHNLLMIALQIFGGKMEFTGFRLLSVAILDMLNVTLI 118

Query:    61 TSSISAALTIAQVGKKENSSTGWLSMC 87
             +++ +AA  +A+VGK  N    W  +C
Sbjct:   119 SAAANAAAFMAEVGKNGNKHARWDKIC 145

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2080742 CASP2 "AT3G11550" [Arabidopsis thaliana (taxid:3702)]

 Score = 112 (44.5 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 34/99 (34%), Positives = 50/99 (50%)

Query:     2 EIATFFA--VSFEAKYSAMPAFKFFVIANAIVSIYGFLVLFLPLDDLAIG---CCFDMLF 56
             E   FF   + FEA Y  +P F+FFVIA A+V   G+LVL LP+  + I         L 
Sbjct:    70 ETLPFFTQFLQFEASYDDLPTFQFFVIAMALVG--GYLVLSLPISVVTILRPLATAPRLL 127

Query:    57 TMLL--------TSSISAALTIAQVGKKENSSTGWLSMC 87
              ++L        T++ S+A  I+ +    N +T WL +C
Sbjct:   128 LLVLDTGVLALNTAAASSAAAISYLAHSGNQNTNWLPIC 166

GO:0005515 "protein binding" evidence=IPI

GO:0007043 "cell-cell junction assembly" evidence=IDA

GO:0042545 "cell wall modification" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=ISS

GO:0048226 "Casparian strip" evidence=IDA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	88
TIGR01569	154	TIGR01569, A_tha_TIGR01569, plant integral membran	1e-13
pfam04535	150	pfam04535, DUF588, Domain of unknown function (DUF	5e-13

>gnl|CDD|233471 TIGR01569, A_tha_TIGR01569, plant integral membrane protein TIGR01569

 Score = 61.3 bits (149), Expect = 1e-13
 Identities = 35/98 (35%), Positives = 48/98 (48%), Gaps = 11/98 (11%)

Query: 1   HEIATFF--AVSFEAKYSAMPAFKFFVIANAIVSIYGFLVLFLP---------LDDLAIG 49
            E    F   ++F+AK+S +PAF +FV+ANAI   Y  L L +             L   
Sbjct: 22  RETKVVFVQLITFKAKFSDLPAFVYFVVANAIACGYSLLSLVVSIFGLLKRRVFFKLIAL 81

Query: 50  CCFDMLFTMLLTSSISAALTIAQVGKKENSSTGWLSMC 87
              D++   LL+S  SAA  +A VGK  N   GWL +C
Sbjct: 82  FFLDLVMLALLSSGTSAAAAVAYVGKLGNKEAGWLKIC 119

This model describes a region of ~160 residues found exclusively in plant proteins, generally as the near complete length of the protein. At least 24 different members are found in Arabidopsis thaliana. Members have four predicted transmembrane regions, the last of which is preceded by an invariant CXXXXX[FY]C motif. The family is not functionally characterized. Length = 154

>gnl|CDD|218134 pfam04535, DUF588, Domain of unknown function (DUF588)

 Score = 59.6 bits (145), Expect = 5e-13
 Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 11/99 (11%)

Query: 1   HEIATFFAVSFEAKYSAMPAFKFFVIANAIVSIYGFLVLFLPLDDLAIGCCF-------- 52
            +   FF +  +A +S +PAF++ V+ANAI + Y  L L L +  L+             
Sbjct: 30  KQTKPFFFIQKKASFSDLPAFRYLVVANAIAAGYSLLQLVLSVYLLSRKKPRTKGLAWLL 89

Query: 53  ---DMLFTMLLTSSISAALTIAQVGKKENSSTGWLSMCH 88
              D +   LL ++ SAA  I  + +  NS   W+ +C+
Sbjct: 90  FILDQVMAYLLLAAASAAAAIVYLARNGNSHANWMKICN 128

This family of plant proteins contains a domain that may have a catalytic activity. It has a conserved arginine and aspartate that could form an active site. These proteins are predicted to contain 3 or 4 transmembrane helices. Length = 150

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	88
TIGR01569	154	A_tha_TIGR01569 plant integral membrane protein TI	99.97
PF04535	149	DUF588: Domain of unknown function (DUF588); Inter	99.94

>TIGR01569 A_tha_TIGR01569 plant integral membrane protein TIGR01569

Probab=99.97  E-value=7.3e-31  Score=183.86  Aligned_cols=88  Identities=40%  Similarity=0.677  Sum_probs=82.1

Q ss_pred             CcceeeEE--EEEEEEeccCCchHHHHHHHHHHHHHHHHHHhc------cCC---chhhhhhhHHHHHHHHHHHHHHHHH
Q 036354            1 HEIATFFA--VSFEAKYSAMPAFKFFVIANAIVSIYGFLVLFL------PLD---DLAIGCCFDMLFTMLLTSSISAALT   69 (88)
Q Consensus         1 ~~t~~~~~--i~~~a~ysd~~af~~fV~anai~~~Ysll~l~~------r~~---~~~~l~~~D~v~~~ll~sa~sAA~~   69 (88)
                      |||.++++  +++++||+|+|+|+|||++|+|+++|+++|+++      |++   .+|++|++||+|+|+++||++||++
T Consensus        22 ~qt~~~~~~~~~~~a~f~d~~af~y~v~anai~~~Ysll~l~~~~~~~~~~~~~~~~~~~f~~D~v~~~Ll~sa~sAA~a  101 (154)
T TIGR01569        22 RETKVVFVQLITFKAKFSDLPAFVYFVVANAIACGYSLLSLVVSIFGLLKRRVFFKLIALFFLDLVMLALLSSGTSAAAA  101 (154)
T ss_pred             cceeeeecccceeeeeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            68999988  999999999999999999999999999999987      222   3579999999999999999999999


Q ss_pred             HHHHHhcCcccCCccCcCC
Q 036354           70 IAQVGKKENSSTGWLSMCH   88 (88)
Q Consensus        70 i~yl~~~Gn~~~~W~~iC~   88 (88)
                      ++|++|+||+|++|+|+|+
T Consensus       102 v~~l~~~G~~~~~W~~iC~  120 (154)
T TIGR01569       102 VAYVGKLGNKEAGWLKICG  120 (154)
T ss_pred             HHHHHHccccccchhhHHH
Confidence            9999999999999999996

This model describes a region of ~160 residues found exclusively in plant proteins, generally as the near complete length of the protein. At least 24 different members are found in Arabidopsis thaliana. Members have four predicted transmembrane regions, the last of which is preceded by an invariant CXXXXX[FY]C motif. The family is not functionally characterized.

>PF04535 DUF588: Domain of unknown function (DUF588); InterPro: IPR006702 This family of plant proteins contains a domain that may have a catalytic activity

Probab=99.94  E-value=5.1e-27  Score=161.95  Aligned_cols=88  Identities=36%  Similarity=0.588  Sum_probs=81.6

Q ss_pred             CcceeeEEEEEEEEeccCCchHHHHHHHHHHHHHHHHHHhc------c--C---CchhhhhhhHHHHHHHHHHHHHHHHH
Q 036354            1 HEIATFFAVSFEAKYSAMPAFKFFVIANAIVSIYGFLVLFL------P--L---DDLAIGCCFDMLFTMLLTSSISAALT   69 (88)
Q Consensus         1 ~~t~~~~~i~~~a~ysd~~af~~fV~anai~~~Ysll~l~~------r--~---~~~~~l~~~D~v~~~ll~sa~sAA~~   69 (88)
                      |||.+++.+++++||+|+|+|+|+|++|+|+++|+++|++.      +  .   ...|++|++||+++|+++||++||++
T Consensus        29 ~qt~~~~~~~~~~~f~~~~af~ylv~a~~i~~~Ysl~~~~~~~~~~~~~~~~~~~~~~~~f~~Dqv~~~ll~sa~~Aa~~  108 (149)
T PF04535_consen   29 KQTVSVFSIQFTAKFSDYPAFRYLVAANVIACVYSLLQLVLSIYSLSRGKLRSKLLAWFLFILDQVLAYLLFSAASAAAA  108 (149)
T ss_pred             CCcceeeccccceeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            68889999999999999999999999999999999999887      2  1   12469999999999999999999999


Q ss_pred             HHHHHhcCcccCCccCcCC
Q 036354           70 IAQVGKKENSSTGWLSMCH   88 (88)
Q Consensus        70 i~yl~~~Gn~~~~W~~iC~   88 (88)
                      ++|++++||+|++|+++|+
T Consensus       109 ~~~~~~~g~~~~~W~~vC~  127 (149)
T PF04535_consen  109 VAYLGKKGNSHVQWSKVCS  127 (149)
T ss_pred             HHHHHHhccccccchhhcc
Confidence            9999999999999999996

It has a conserved arginine and aspartate that could form an active site. These proteins are predicted to contain 3 or 4 transmembrane helices.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00