Citrus Sinensis ID: 036355

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-----
Protein Sequence
MAGFAGASSSQQQHLQNPNPPLPQHQHQQQRTKRVAFSEIPGKRTMYEDIQDPNSKGHRSCRCFTCCAWICISVTAFLIIIFVLGFVAVGILRSSLPHINVLKVHSSNISISESSRQKFLTMEISVKLEFENENDKMSLHYEKLRVEIKAENVRIGHTAIPGFSQRSGNETKIDVNTTTTNTRIDDANAEILKLRYRQKAMLVDLFMTGDVGFSFGGLNIKGLPFEVNCQKVNEAYIKSDDPPKCYTKLLSFRGL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHEEEEEEccccEEEEEEEEEccEEEcccccccEEEEEEEEEEEEEEcccEEEEEEEcEEEEEEEccEEEEEEEEccEEEccccEEEEEEEEEEccccccHHHHHHHHHHHcccEEEEEEEEEEEEEEEEEEEEEccEEEEEEcccccccccccccccccEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEcEEEEccccccccEEEEEEEEEEEEccccEEEEEEccEEEEEEEcccEcccccccccEcccccEEEEEEEEEEccccccHHHHHHHHHHHHcccEEEEEEEEEEEEEEEccEEEcEEEEEEEEccEEccccccccccccEEEEEEEccc
Coil and Loop (DISEMBL)
magfagasssqqqhlqnpnpplpqhqhqqqrtkrvafseipgkrtmyediqdpnskghrscrcftccaWICISVTAFLIIIFVLGFVAVGILrsslphinvlkvhssnisisessRQKFLTMEISVKLEFENENDKMSLHYEKLRVEIKAEnvrightaipgfsqrsgnetkidvnttttntridDANAEILKLRYRQKAMLVDLFmtgdvgfsfgglnikglpfevNCQKVNEayiksddppkcytkllsfrgl
Flexible Loop (DISEMBL)
magfagasssqqQHLQNPNPPLPQHQHQQQRTKRVAFSEIPGKRTMYEDIQDPNSKGHRSCRCFTCCAWICISVTAFLIIIFVLGFVAVGILRSSLPHINVLKVhssnisisessrqkFLTMEISVKLefenendkmsLHYEKLRVEIKAENVRIGhtaipgfsqrsgnetkidvnttttntriddanAEILKLRYRQKAMLVDLFMTGDVGFSFGGLNIKGLPFEVNCQKVNeayiksddppkcYTKLLSFRGL
Low Complexity Region (SEG)
MAGFAGASSSqqqhlqnpnpplpqhqhqqqRTKRVAFSEIPGKRTMYEDIQDPNSKGHRSCRCFTCCAWICISVTAFLIIIFVLGFVAVGILRSSLPHINVLKVHssnisisessRQKFLTMEISVKLEFENENDKMSLHYEKLRVEIKAENVRIGHTAIPGFSQRSGNETKIDVnttttntRIDDANAEILKLRYRQKAMLVDLFMTGDVGFSFGGLNIKGLPFEVNCQKVNEAYIKSDDPPKCYTKLLSFRGL
Disordered region (IsUnstruct)
**********************************************************RSCRCFTCCAWICISVTAFLIIIFVLGFVAVGILRSSLPHINVLKVHSSNIS*******KFLTMEISVKLEFENENDKMSLHYEKLRVEIKAENVRIGHTAIPGF*********IDVNTTTTNTRIDDANAEILKLRYRQKAMLVDLFMTGDVGFSFGGLNIKGLPFEVNCQKVNEAYIKSDDPPKCYTKLL*****
Disordered Region (DISOPRED)
**************************************************************CFTCCAWICISVTAFLIIIFVLGFVAVGILRSSLPHINVLKVHSSNISISESSRQKFLTMEISVKLEFENENDKMSLHYEKLRVEIKAENVRIGHTAIPGFSQRSGNETKIDVNTTTTNTRIDDANAEILKLRYRQKAMLVDLFMTGDVGFSFGGLNIKGLPFEVNCQKVNEA*I******KCYTKLLSFRGL
Disordered Region (DISEMBL)
***********************************AFSEIPGKRTMYEDIQ********SCRCFTCCAWICISVTAFLIIIFVLGFVAVGILRSSLPHINVLKVHSSNISISESSRQKFLTMEISVKLEFENENDKMSLHYEKLRVEIKAENVRIGHTAIPGFSQRSGNETKIDVNTTTTNTRIDDANAEILKLRYRQKAMLVDLFMTGDVGFSFGGLNIKGLPFEVNCQKVNEAYIKSDDPPKCYTKLLSFRGL
Disordered Region (DISPRO)
**************LQNPNPPLPQHQ*******RVA*********************HRSCRCFTCCAWICISVTAFLIIIFVLGFVAVGILRSSLPHINVLKVHSSNISISESSRQKFLTMEISVKLEFENENDKMSLHYEKLRVEIKAENVRIGHTAIPGFSQRSGNETKIDVNTTTTNTRIDDANAEILKLRYRQKAMLVDLFMTGDVGFSFGGLNIKGLPFEVNCQKVNEAYIKSDDPPKCYTKLLSFRGL
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAGFAGASSSQQQHLQNPNPPLPQHQHQQQRTKRVAFSEIPGKRTMYEDIQDPNSKGHRSCRCFTCCAWICISVTAFLIIIFVLGFVAVGILRSSLPHINVLKVHSSNISISESSRQKFLTMEISVKLEFENENDKMSLHYEKLRVEIKAENVRIGHTAIPGFSQRSGNETKIDVNTTTTNTRIDDANAEILKLRYRQKAMLVDLFMTGDVGFSFGGLNIKGLPFEVNCQKVNEAYIKSDDPPKCYTKLLSFRGL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	255
357460525	254	hypothetical protein MTR_3g062470 [Medic	0.866	0.870	0.269	2e-24
255586377	287	conserved hypothetical protein [Ricinus	0.772	0.686	0.289	1e-23
42570985	321	late embryogenesis abundant hydroxyproli	0.737	0.585	0.278	3e-20
297826467	316	hypothetical protein ARALYDRAFT_481963 [	0.737	0.594	0.273	4e-20
51536522	180	At2g30505 [Arabidopsis thaliana] gi|5197	0.694	0.983	0.264	5e-16
255541786	243	conserved hypothetical protein [Ricinus	0.733	0.769	0.252	9e-14
413950433	311	hypothetical protein ZEAMMB73_379747 [Ze	0.678	0.556	0.275	8e-11
449432086	246	PREDICTED: uncharacterized protein LOC10	0.678	0.703	0.254	4e-10
242057779	312	hypothetical protein SORBIDRAFT_03g02584	0.631	0.516	0.261	2e-09
297842970	970	predicted protein [Arabidopsis lyrata su	0.686	0.180	0.262	3e-09

>gi|357460525|ref|XP_003600544.1| hypothetical protein MTR_3g062470 [Medicago truncatula] gi|355489592|gb|AES70795.1| hypothetical protein MTR_3g062470 [Medicago truncatula]

 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 122/234 (52%), Gaps = 13/234 (5%)

Query: 29  QQRTKRVAFSEIP----------GKRTMYEDIQDPNSKGHRSCRCFTCCAWICISVTAFL 78
           ++  +RVAF E+P          G     +   D   KGH +     CCAW C+++  F+
Sbjct: 20  RKSGRRVAF-EVPSGHNHQSHSSGLDNNIDTSIDDFDKGHHNPCFLACCAWSCLAIFIFV 78

Query: 79  IIIFVLGFVAVGILRSSLPHINVLKVHSSNISISESSRQKFLTMEISVKLEFENENDKMS 138
           I+   LG   +  L++ +P +NV   + + + +  SS++  +   I++ L F N+N+++ 
Sbjct: 79  IVFLFLGISYLAFLKAGMPKVNVRTFNMTKLQVDSSSQK--MDAIINLGLRFSNKNEELK 136

Query: 139 LHYEKLRVEIKAENVRIGHTAIPGFSQRSGNETKIDVNTTTTNTRIDDANAEILKLRYRQ 198
           L Y  L VE+ + +V +G T + GFSQ   N+T +D+  TT +  ++    + LK   + 
Sbjct: 137 LLYGPLFVEVISNDVLLGRTKVKGFSQVPKNDTNLDMTMTTNDENVNVYATDDLKSDIKA 196

Query: 199 KAMLVDLFMTGDVGFSFGGLNIKGLPFEVNCQKVNEAYIKSDDPPKCYTKLLSF 252
             M+ D++++G++G   G L++  +PF  +C+++    +     P C  K+ S+
Sbjct: 197 YEMVFDVYVSGNIGVQIGSLHMVNVPFLSSCEQIKRMDVDYGRKPDCDIKMFSY 250

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255586377|ref|XP_002533836.1| conserved hypothetical protein [Ricinus communis] gi|223526228|gb|EEF28550.1| conserved hypothetical protein [Ricinus communis]

 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 112/197 (56%)

Query: 57  GHRSCRCFTCCAWICISVTAFLIIIFVLGFVAVGILRSSLPHINVLKVHSSNISISESSR 116
           G    RC  CCAW+     A ++I+ ++  + V  LRS+LP   VL++    + ++  + 
Sbjct: 91  GRHRPRCSLCCAWMFFGSLAAVLIVLIIILIFVVTLRSALPEFYVLRMDFPKLHLASENN 150

Query: 117 QKFLTMEISVKLEFENENDKMSLHYEKLRVEIKAENVRIGHTAIPGFSQRSGNETKIDVN 176
           + FL  ++ ++++  N N+++ L Y +L+V++ +E++ +G T IPGFSQ   ++T + + 
Sbjct: 151 ELFLDADVHIRIQALNINEEVELEYSELKVQVSSEDIPLGETKIPGFSQNPKDKTVLRMR 210

Query: 177 TTTTNTRIDDANAEILKLRYRQKAMLVDLFMTGDVGFSFGGLNIKGLPFEVNCQKVNEAY 236
           T   N+  ++ +A+ LK     +  +VD+ + G++GF  G + +  +P  + CQK+ +A 
Sbjct: 211 TRVWNSPANEDDAKALKENAENRQTVVDILLNGNIGFHVGVVKLNWVPALIACQKIKQAE 270

Query: 237 IKSDDPPKCYTKLLSFR 253
           +     PKC  K+  FR
Sbjct: 271 VDFAQKPKCNVKIFGFR 287

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42570985|ref|NP_973566.1| late embryogenesis abundant hydroxyproline-rich glycoprotein [Arabidopsis thaliana] gi|110739946|dbj|BAF01878.1| hypothetical protein [Arabidopsis thaliana] gi|330253306|gb|AEC08400.1| late embryogenesis abundant hydroxyproline-rich glycoprotein [Arabidopsis thaliana]

 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 100/190 (52%), Gaps = 2/190 (1%)

Query: 63  CF-TCCAWICISVTAFLIIIFVLGFVAVGILRSSLPHINVLKVHSSNISISESSRQKFLT 121
           CF  CCA  C+ V+  LII+ ++G  A   ++S LP + V  +  S + I++SS    + 
Sbjct: 132 CFRKCCACTCMFVSVVLIIVLLVGLSANSSIKSILPQVLVTNLKFSRLDIAKSSTDLLMN 191

Query: 122 MEISVKLEFENENDKMSLHYEKLRVEIKAENVRIGHTAIPGFSQRSGNETKIDVNTTTTN 181
             ++  L+  N NDK  L+Y  ++ +I +EN+ +G   + GF Q  GN T + + T    
Sbjct: 192 ANLNTVLQLSNNNDKTVLYYSPMKADISSENINLGKKTLSGFKQDPGNVTSLKILTRLRK 251

Query: 182 TRIDDANAEILKLRYRQKAMLVDLFMTGDVGFSFGGLNIKGLPFEVNCQKVNEAYIKSDD 241
           +++ D +A +L  + +    LVD+F+ G +   + G  +  +P  + C+ V ++ + +  
Sbjct: 252 SKVYDVDATLLTNKEKTLEALVDVFLRGKLSVDWLGFKVH-IPIVIACESVKQSDVINGL 310

Query: 242 PPKCYTKLLS 251
            P C  ++ S
Sbjct: 311 KPACDVRIFS 320

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297826467|ref|XP_002881116.1| hypothetical protein ARALYDRAFT_481963 [Arabidopsis lyrata subsp. lyrata] gi|297326955|gb|EFH57375.1| hypothetical protein ARALYDRAFT_481963 [Arabidopsis lyrata subsp. lyrata]

 Score =  104 bits (259), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 100/190 (52%), Gaps = 2/190 (1%)

Query: 63  CF-TCCAWICISVTAFLIIIFVLGFVAVGILRSSLPHINVLKVHSSNISISESSRQKFLT 121
           CF  CCA  C+ V+  LII+ ++G  A   ++S LP + V  +  S + +++SS    + 
Sbjct: 127 CFRKCCACTCMFVSIVLIIVLLVGLSANSSIKSILPQVLVTNLKFSRLDVAKSSTDLLMN 186

Query: 122 MEISVKLEFENENDKMSLHYEKLRVEIKAENVRIGHTAIPGFSQRSGNETKIDVNTTTTN 181
             ++  L+  N NDK  L+Y  ++ +I +EN+ +G   +PGF Q  GN T + + T    
Sbjct: 187 ANLNTVLQLSNNNDKTVLYYSPMKADISSENINLGKKMLPGFKQDPGNVTSLKILTRLRK 246

Query: 182 TRIDDANAEILKLRYRQKAMLVDLFMTGDVGFSFGGLNIKGLPFEVNCQKVNEAYIKSDD 241
           +++ D +A +L  + +    +VD+F+ G +   + G  +  +P  + C+ V ++ + +  
Sbjct: 247 SKVYDVDATLLTNKEKTLEAVVDVFLRGKLSVDWLGFKVH-IPIVIACENVKQSDVINGL 305

Query: 242 PPKCYTKLLS 251
            P C  +  S
Sbjct: 306 KPACDVRTFS 315

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|51536522|gb|AAU05499.1| At2g30505 [Arabidopsis thaliana] gi|51972134|gb|AAU15171.1| At2g30505 [Arabidopsis thaliana]

 Score = 90.9 bits (224), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 93/178 (52%), Gaps = 1/178 (0%)

Query: 74  VTAFLIIIFVLGFVAVGILRSSLPHINVLKVHSSNISISESSRQKFLTMEISVKLEFENE 133
           V+  LII+ ++G  A   ++S LP + V  +  S + I++SS    +   ++  L+  N 
Sbjct: 3   VSVVLIIVLLVGLSANSSIKSILPQVLVTNLKFSRLDIAKSSTDLLMNANLNTVLQLSNN 62

Query: 134 NDKMSLHYEKLRVEIKAENVRIGHTAIPGFSQRSGNETKIDVNTTTTNTRIDDANAEILK 193
           NDK  L+Y  ++ +I +EN+ +G   + GF Q  GN T + + T    +++ D +A +L 
Sbjct: 63  NDKTVLYYSPMKADISSENINLGKKTLSGFKQDPGNVTSLKILTRLRKSKVYDVDATLLT 122

Query: 194 LRYRQKAMLVDLFMTGDVGFSFGGLNIKGLPFEVNCQKVNEAYIKSDDPPKCYTKLLS 251
            + +    LVD+F+ G +   + G  +  +P  + C+ V ++ + +   P C  ++ S
Sbjct: 123 NKEKTLEALVDVFLRGKLSVDWLGFKVH-IPIVIACESVKQSDVINGLKPACDVRIFS 179

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541786|ref|XP_002511957.1| conserved hypothetical protein [Ricinus communis] gi|223549137|gb|EEF50626.1| conserved hypothetical protein [Ricinus communis]

 Score = 83.2 bits (204), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 88/190 (46%), Gaps = 3/190 (1%)

Query: 66  CCAWICISVTAFLIIIFVLGFVAVGILRSSLPHINVLKVHSSNISISESSRQKFLTMEIS 125
           CC  + I     L+I+F+LG V        LP  ++     S+  ++      +L     
Sbjct: 54  CCRILVIISFTVLLILFILGGVFYLWFDPKLPVFHLQSFKISSFRVTTKPDGTYLNAATV 113

Query: 126 VKLEFENENDKMSLHYEKLRVEI---KAENVRIGHTAIPGFSQRSGNETKIDVNTTTTNT 182
            ++E  N N K++  Y + +V++   + +  ++G  ++PGF Q   N T   +  +  N 
Sbjct: 114 ARVEVRNPNSKLTYRYSESQVQMTLGQDQGTQLGSMSLPGFLQDKKNTTSFKIQMSVKNE 173

Query: 183 RIDDANAEILKLRYRQKAMLVDLFMTGDVGFSFGGLNIKGLPFEVNCQKVNEAYIKSDDP 242
            I+D     LK +++ + ++V++ +T  VG    GL I  L  +V+C  +    I  DD 
Sbjct: 174 LIEDGVGSRLKSQFKSRKLVVNVQVTTKVGVDVQGLEIGMLGVDVSCDGITLKQIDGDDM 233

Query: 243 PKCYTKLLSF 252
           PKC    L +
Sbjct: 234 PKCSIHTLKW 243

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413950433|gb|AFW83082.1| hypothetical protein ZEAMMB73_379747 [Zea mays]

 Score = 73.6 bits (179), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 82/189 (43%), Gaps = 16/189 (8%)

Query: 51  QDPNSKGHRSCR--CFTCCAWICISVTAFLIIIFVLGFVAVGIL----RSSLPHINVLKV 104
           + P  +  RS R  C  CC W+    T  L+ +  LG +A G+     R   P   V  V
Sbjct: 57  RPPARRAGRSARGWCCACCLWL----TLVLVGLAFLGAIAAGVFYVVYRPRPPSFAVTSV 112

Query: 105 HSSNISISESSRQKFLTMEISVKLEFENENDKMSLHYEKLRVEIKAENVRIGHTAIPGFS 164
             + +++S+S     LT  +   +   N NDK++  Y  + V   +    +G   +PGF 
Sbjct: 113 RLAALNVSDSDA---LTSRVEFTVTARNPNDKIAFDYGDMAVSFASGGADVGDAVVPGFL 169

Query: 165 QRSGNETKIDVNTTTTNTRIDDANAEILKLRYRQKAMLVDLFMTGDVGFSFGGLNIKGLP 224
             +GN T I    +T  + ID   A  L+ R   K+ ++   M   VGF  G    K + 
Sbjct: 170 HPAGNTTVIRAAASTAASTIDPVQAAALRSR---KSHVMSAQMDAKVGFQIGRSKSKSIN 226

Query: 225 FEVNCQKVN 233
             V+C  V+
Sbjct: 227 VRVSCAGVS 235

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432086|ref|XP_004133831.1| PREDICTED: uncharacterized protein LOC101214208 [Cucumis sativus] gi|449478172|ref|XP_004155241.1| PREDICTED: uncharacterized LOC101214208 [Cucumis sativus]

 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 84/181 (46%), Gaps = 8/181 (4%)

Query: 77  FLIIIFVLGFVAVG-----ILRSSLPHINVLKVHSSNISISESSRQKFLTMEISVKLEFE 131
            L++I ++  +AVG          LP +++     S  ++++ S   +L  +   ++E +
Sbjct: 61  LLVLILIVAILAVGGVLYLWFEPKLPVVHLQSFRISKFNVTDKSDGSYLNAKTIGRIEIK 120

Query: 132 NENDKMSLHYEKLRVEIKA-ENVR--IGHTAIPGFSQRSGNETKIDVNTTTTNTRIDDAN 188
           N N K+SL+Y  + V+I A E  R  +G   +P F Q   N T + + T  +N  +DD  
Sbjct: 121 NPNSKLSLNYGDIEVQIAAGEGTRTELGSMIVPSFIQSEENTTSLKIETMVSNETVDDGA 180

Query: 189 AEILKLRYRQKAMLVDLFMTGDVGFSFGGLNIKGLPFEVNCQKVNEAYIKSDDPPKCYTK 248
              L    R   ++V++     +GF   G  +  +  EV+C  V+   +   + PKC   
Sbjct: 181 GRNLNSGNRTGELVVNVEARTKIGFVVDGRRMPPVKIEVSCGSVSLKRLDRGNVPKCSIH 240

Query: 249 L 249
           L
Sbjct: 241 L 241

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242057779|ref|XP_002458035.1| hypothetical protein SORBIDRAFT_03g025840 [Sorghum bicolor] gi|241930010|gb|EES03155.1| hypothetical protein SORBIDRAFT_03g025840 [Sorghum bicolor]

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 77/176 (43%), Gaps = 15/176 (8%)

Query: 63  CFTCCAWICISVTAFLIIIFVLGFVAVGIL----RSSLPHINVLKVHSSNISISESSRQK 118
           C  CC W+    T  L+ +  LG +A G+     R   P   V  +  + +++S+S    
Sbjct: 71  CCACCLWL----TLVLVGLVFLGAIAAGVFYVVYRPRPPSFAVTSLRLAALNVSDSDA-- 124

Query: 119 FLTMEISVKLEFENENDKMSLHYEKLRVEIKAEN-VRIGHTAIPGFSQRSGNETKIDVNT 177
            LT  I   +   N NDK++  Y  +     +++   +G   +PGF   +GN T +    
Sbjct: 125 -LTSRIEFTVTARNPNDKIAFRYGDIAASFASDDGADVGDGVVPGFLHPAGNTTVVRAAA 183

Query: 178 TTTNTRIDDANAEILKLRYRQKAMLVDLFMTGDVGFSFGGLNIKGLPFEVNCQKVN 233
           +T ++ ID   A  L+ R   K+ ++   M   VGF  G    K +   V C  V+
Sbjct: 184 STASSTIDPVQAAALRSR---KSHVMAAQMDAKVGFQIGRFKSKSINVRVTCAGVS 236

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842970|ref|XP_002889366.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297335208|gb|EFH65625.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 83/187 (44%), Gaps = 12/187 (6%)

Query: 77  FLIIIFVLGFVAVGIL----RSSLPHINVLKVHSSNISISESSRQ---KFLTMEISVKLE 129
           FL +I ++  +AV +        LP + +     SN + S+ +      FLT + +  L+
Sbjct: 77  FLAVILLIFLIAVAVFFLWYSPKLPVVRLASFKISNFNFSDGNSDDGWSFLTADTTAVLD 136

Query: 130 FENENDKMSLHYEKLRVEI----KAENVRIGHTAIPGFSQRSGNETKIDVNTTTTNTRID 185
           F N N K++ +Y    V +    K     +  T + GF ++ GN T + V T  T  ++D
Sbjct: 137 FRNPNGKLTFYYRDADVAVILGEKDFETNLRSTKVKGFIEKPGNRTAVIVPTRVTKRQVD 196

Query: 186 DANAEILKLRYRQKAMLVDLFMTGDVGFSFGGLNIKGLPFEVNCQKVNEAYIKSDDPPKC 245
           D  A+ L+   + K +LV +     VG + G   I  +   + C  V    + S    KC
Sbjct: 197 DPTAKRLQAELKGKKLLVTVTAKTKVGLAVGSRKIVAVGVSLRCGGVRLQTLDSQM-AKC 255

Query: 246 YTKLLSF 252
             KLL +
Sbjct: 256 TIKLLKW 262

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	255
TAIR|locus:1006230172	321	AT2G30505 "AT2G30505" [Arabido	0.737	0.585	0.252	3.5e-20
TAIR|locus:2125093	261	AT4G01110 "AT4G01110" [Arabido	0.760	0.743	0.265	4.7e-12
TAIR|locus:2062974	252	AT2G46300 "AT2G46300" [Arabido	0.764	0.773	0.228	6.4e-12
TAIR|locus:4515102487	289	AT1G01453 "AT1G01453" [Arabido	0.760	0.671	0.254	2.4e-09
TAIR|locus:2143064	287	EMB3135 "AT5G11890" [Arabidops	0.776	0.689	0.219	9.3e-06
TAIR|locus:2007968	264	AT1G17620 "AT1G17620" [Arabido	0.666	0.643	0.232	0.00017
TAIR|locus:2039632	243	AT2G27260 "AT2G27260" [Arabido	0.552	0.580	0.246	0.00018
TAIR|locus:2167489	248	NHL25 "AT5G36970" [Arabidopsis	0.698	0.717	0.232	0.00019
TAIR|locus:2178993	281	AT5G21130 "AT5G21130" [Arabido	0.666	0.604	0.237	0.00026
TAIR|locus:2020163	239	AT1G54540 "AT1G54540" [Arabido	0.639	0.682	0.233	0.0003

TAIR|locus:1006230172 AT2G30505 "AT2G30505" [Arabidopsis thaliana (taxid:3702)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 48/190 (25%), Positives = 91/190 (47%)

Query:    63 CFT-CCAWICISVTAFLIIIFVLGFVAVGILRSSLPHINVLKVHXXXXXXXXXXRQKFLT 121
             CF  CCA  C+ V+  LII+ ++G  A   ++S LP + V  +               + 
Sbjct:   132 CFRKCCACTCMFVSVVLIIVLLVGLSANSSIKSILPQVLVTNLKFSRLDIAKSSTDLLMN 191

Query:   122 MEISVKLEFENENDKMSLHYEKLRVEIKAENVRIGHTAIPGFSQRSGNETKIDVXXXXXX 181
               ++  L+  N NDK  L+Y  ++ +I +EN+ +G   + GF Q  GN T + +      
Sbjct:   192 ANLNTVLQLSNNNDKTVLYYSPMKADISSENINLGKKTLSGFKQDPGNVTSLKILTRLRK 251

Query:   182 XRIDDANAEILKLRYRQKAMLVDLFMTGDVGFSFGGLNIKGLPFEVNCQKVNEAYIKSDD 241
              ++ D +A +L  + +    LVD+F+ G +   + G  +  +P  + C+ V ++ + +  
Sbjct:   252 SKVYDVDATLLTNKEKTLEALVDVFLRGKLSVDWLGFKVH-IPIVIACESVKQSDVINGL 310

Query:   242 PPKCYTKLLS 251
              P C  ++ S
Sbjct:   311 KPACDVRIFS 320

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2125093 AT4G01110 "AT4G01110" [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 4.7e-12, P = 4.7e-12
 Identities = 56/211 (26%), Positives = 94/211 (44%)

Query:    53 PNSKGHRS-CRCFTCCAWICISVTAFLIIIFVLGFVAVGILRSSLPHINVLKVHXXXXXX 111
             P  K   S CR F CC  +CI+V A +I++ +L  V+V  L  S P + V+++       
Sbjct:    52 PTKKRQWSRCRVFCCC--VCITV-AIVILLLILT-VSVFFLYYS-PRLPVVRLSSFRVSN 106

Query:   112 XXXXRQKF------LTMEISVKLEFENENDKMSLHYEKLRVEIKA-EN---VRIGHTAIP 161
                   K       LT E + +L+F N N K+  +Y  + V +   E+     +G T + 
Sbjct:   107 FNFSGGKAGDGLSQLTAEATARLDFRNPNGKLRYYYGNVDVAVSVGEDDFETSLGSTKVK 166

Query:   162 GFSQRSGNETKIDVXXXXXXXRIDDANAEILKLRYRQKAMLVDLFMTGDVGFSFGGLNIK 221
             GF ++ GN T + V       ++DD   + L+   + K ++V +     VG   G   I 
Sbjct:   167 GFVEKPGNRTVVIVPIKVKKQQVDDPTVKRLRADMKSKKLVVKVMAKTKVGLGVGRRKIV 226

Query:   222 GLPFEVNCQKVNEAYIKSDDPPKCYTKLLSF 252
              +   ++C  V    + S    KC  K+L +
Sbjct:   227 TVGVTISCGGVRLQTLDSK-MSKCTIKMLKW 256

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2062974 AT2G46300 "AT2G46300" [Arabidopsis thaliana (taxid:3702)]

 Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
 Identities = 46/201 (22%), Positives = 82/201 (40%)

Query:    56 KGHRSCRCFTCCAWICISVTAFLIIIFVLGFVAVGILRSSLPHINVLKVHXXXXXXXXXX 115
             K  RSC C  CC  ICI++  F+ ++ V   V        LP  ++              
Sbjct:    50 KKRRSC-CRFCCCCICITLVLFIFLLLVGTAVFYLWFDPKLPTFSLASFRLDGFKLADDP 108

Query:   116 RQKFLTMEISVKLEFENENDKMSLHYEKLRVEIKA----ENVRIGHTAIPGFSQRSGNET 171
                 L+     ++E +N N K+  +Y    V++      +   +G T + GF Q   N T
Sbjct:   109 DGASLSATAVARVEMKNPNSKLVFYYGNTAVDLSVGSGNDETGMGETTMNGFRQGPKNST 168

Query:   172 KIDVXXXXXXXRIDDANAEILKLRYRQKAMLVDLFMTGDVGFSFGGLNIKGLPFEVNCQK 231
              + V        ++   A+ L  +++ K +++++     VG   GG+ I  L   + C  
Sbjct:   169 SVKVETTVKNQLVERGLAKRLAAKFQSKDLVINVVAKTKVGLGVGGIKIGMLAVNLRCGG 228

Query:   232 VNEAYIKSDDPPKCYTKLLSF 252
             V+   + +D P KC    L +
Sbjct:   229 VSLNKLDTDSP-KCILNTLKW 248

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:4515102487 AT1G01453 "AT1G01453" [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 2.4e-09, P = 2.4e-09
 Identities = 54/212 (25%), Positives = 90/212 (42%)

Query:    53 PNSKGHRS--CRCFTCCAWICISVTAFLIIIFVLGFVAVGILRSSLPHINVLKVHXXXXX 110
             P  K  R   CR F CC  +CI     L++I +   VAV  L  S P + V+++      
Sbjct:    57 PADKKRRCSFCRVFCCC--VCILFAVILLLILIA--VAVFFLWYS-PKLPVVRLASFKIS 111

Query:   111 XXXXXRQK------FLTMEISVKLEFENENDKMSLHYEKLRVEI----KAENVRIGHTAI 160
                    K      FL+ + +  L+F N N K++ +Y    V +    K     +  T +
Sbjct:   112 NFNFSDGKSDDGWSFLSADTTSVLDFRNPNGKLTFYYGDTDVAVILGEKDFETNLESTKV 171

Query:   161 PGFSQRSGNETKIDVXXXXXXXRIDDANAEILKLRYRQKAMLVDLFMTGDVGFSFGGLNI 220
              GF ++ GN T + V       ++DD  A+ L++  + K +LV +     VG + G   I
Sbjct:   172 KGFIEKPGNRTAVIVPTTVRKRQVDDPTAKRLQVELKSKKLLVTVTAKTKVGLAVGSRKI 231

Query:   221 KGLPFEVNCQKVNEAYIKSDDPPKCYTKLLSF 252
               +   + C  V    + S    +C  K+L +
Sbjct:   232 VTVGVSLRCGGVILQTLDSK-MAQCTIKMLKW 262

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2143064 EMB3135 "AT5G11890" [Arabidopsis thaliana (taxid:3702)]

 Score = 124 (48.7 bits), Expect = 9.3e-06, P = 9.3e-06
 Identities = 48/219 (21%), Positives = 81/219 (36%)

Query:    40 IPGKRTMYEDIQDPNSKGHR-----SCR--CFTCCAW--ICISVTAFLIIIFVLGFVAVG 90
             IP  R +Y     P S+ H      SCR  C  CC W  + I + A +  I       + 
Sbjct:    51 IPANRPVYRP--QPYSRRHHHQSRPSCRRICCCCCFWSILIILILALMTAIAATAMYVIY 108

Query:    91 ILRS---SLPHINVLKVHXXXXXXXXXXRQKFLTMEISVKLEFENENDKMSLHYEKLRVE 147
               R    S+P I + +V+              L+   +  L  EN N  +S  Y+   V 
Sbjct:   109 HPRPPSFSVPSIRISRVNLTTSSDSSVSH---LSSFFNFTLISENPNQHLSFSYDPFTVT 165

Query:   148 IKA--ENVRIGHTAIPGFSQRSGNETKID--VXXXXXXXRIDDANAEILKLRYRQKAMLV 203
             + +      +G+  +P F   +GN+T     +        +D   A+ L+    +  +  
Sbjct:   166 VNSAKSGTMLGNGTVPAFFSDNGNKTSFHGVIATSTAARELDPDEAKHLRSDLTRARVGY 225

Query:   204 DLFMTGDVGFSFGGLNIKGLPFEVNCQKVNEAYIKSDDP 242
             ++ M   V    G L  +G+  +V C+       K   P
Sbjct:   226 EIEMRTKVKMIMGKLKSEGVEIKVTCEGFEGTIPKGKTP 264

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2007968 AT1G17620 "AT1G17620" [Arabidopsis thaliana (taxid:3702)]

 Score = 113 (44.8 bits), Expect = 0.00017, P = 0.00017
 Identities = 42/181 (23%), Positives = 67/181 (37%)

Query:    59 RSCRCFTCCAWICISVTAFLIIIFVLGFVAVGILRSSLPHINVLKVHXXXXXXXXXXRQK 118
             R C C  CC W    +   L+I+     V   I R   P   V ++           R  
Sbjct:    55 RGC-CCRCCCWTIFVIILLLLIVAAASAVVYLIYRPQRPSFTVSELKISTLNFTSAVR-- 111

Query:   119 FLTMEISVKLEFENENDKMSLHYEKLRVEI-KA-----ENVRIGHTAIPGFSQRSGNETK 172
              LT  IS+ +   N N  +   Y+   + + KA     ++V IG   I  FS    N T 
Sbjct:   112 -LTTAISLSVIARNPNKNVGFIYDVTDITLYKASTGGDDDVVIGKGTIAAFSHGKKNTTT 170

Query:   173 IDVXXXXXXXRIDDANAEILKLRYR-QKAMLVDLFMTGDVGFSFGGLNIKGLPFEVNCQK 231
             +          +D+ +A  LK   + +KA+ + + +   V    G L        V C+ 
Sbjct:   171 LRSTIGSPPDELDEISAGKLKGDLKAKKAVAIKIVLNSKVKVKMGALKTPKSGIRVTCEG 230

Query:   232 V 232
             +
Sbjct:   231 I 231

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2039632 AT2G27260 "AT2G27260" [Arabidopsis thaliana (taxid:3702)]

 Score = 112 (44.5 bits), Expect = 0.00018, P = 0.00018
 Identities = 36/146 (24%), Positives = 65/146 (44%)

Query:    72 ISVTAFLIIIFVLGFVAVGILRSSLPHINVLKVHXXXXXXXXXXRQKFLTMEISVKLEFE 131
             I  T FL+++ ++ F+   I+R  LP +N+  +            Q  ++ +  ++L+F 
Sbjct:    64 IVFTTFLLLLGLILFIFFLIVRPQLPDVNLNSL--SVSNFNVSNNQ--VSGKWDLQLQFR 119

Query:   132 NENDKMSLHYEKLRVEIKAENVRIGHTAIPGFSQRSGNETKIDVXXXXXXXRIDDANAEI 191
             N N KMSLHYE     +    V +  T +  F Q   ++T ++         +D    + 
Sbjct:   120 NPNSKMSLHYETALCAMYYNRVSLSETRLQPFDQGKKDQTVVNATLSVSGTYVDGRLVDS 179

Query:   192 L-KLRYRQKAMLVDLFMTGDVGFSFG 216
             + K R  +  +  DL M   V F +G
Sbjct:   180 IGKERSVKGNVEFDLRMISYVTFRYG 205

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2167489 NHL25 "AT5G36970" [Arabidopsis thaliana (taxid:3702)]

 Score = 112 (44.5 bits), Expect = 0.00019, P = 0.00019
 Identities = 46/198 (23%), Positives = 86/198 (43%)

Query:    41 PGKRTMYEDIQDPNSK-GHRSCRCFTCCAWICISVTAFLIIIFVLGFVAVGIL----RSS 95
             P K      +  P  K G RSC C  C   +C ++    ++I ++G + VGIL    R  
Sbjct:    36 PTKTQQAAPLDPPREKKGSRSCWC-RC---VCYTLLVLFLLIVIVGAI-VGILYLVFRPK 90

Query:    96 LPHINVLKVHXXXXXXXXXXRQKFLTMEISVKLEFENENDKMSLHYEK-LRVEIKAENVR 154
              P  N+ ++           +   L+   +V +  +N N+K+ ++YE   ++ +     R
Sbjct:    91 FPDYNIDRLQLTRFQLN---QDLSLSTAFNVTITAKNPNEKIGIYYEDGSKISVLYMQTR 147

Query:   155 IGHTAIPGFSQRSGNETKIDVXXXXXXXRIDDANAEILKLRYRQK---AMLVDLFMTGDV 211
             I + ++P F Q   N T I V          +A + +  L+ +Q+   ++ + + +T  V
Sbjct:   148 ISNGSLPKFYQGHENTTIILVEMTGFT---QNATSLMTTLQEQQRLTGSIPLRIRVTQPV 204

Query:   212 GFSFGGLNIKGLPFEVNC 229
                 G L +  + F V C
Sbjct:   205 RIKLGKLKLMKVRFLVRC 222

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0009814 "defense response, incompatible interaction" evidence=IEP

GO:0009863 "salicylic acid mediated signaling pathway" evidence=IEP

TAIR|locus:2178993 AT5G21130 "AT5G21130" [Arabidopsis thaliana (taxid:3702)]

 Score = 112 (44.5 bits), Expect = 0.00026, P = 0.00026
 Identities = 42/177 (23%), Positives = 71/177 (40%)

Query:    56 KGHRSCRCFTCCAWICISVTAFLIIIFVLGFVAVGILRSSL-PHINVLKVHXXXXXXXXX 114
             K ++SC C  C   +C S++A LIII VL  +A G       PH     V          
Sbjct:    86 KTNKSC-CRRC---LCYSLSALLIII-VLAAIAFGFFYLVYQPHKPQFSVSGVSVTGINL 140

Query:   115 XRQKFLTMEISVKLEFENENDKMSLHYEK-LRVEIKAENVRIGHTAIPGFSQRSGNETKI 173
                   +  I +KL  +N   K+ L YEK    ++     ++G+     F Q +GN T I
Sbjct:   141 TSSSPFSPVIRIKLRSQNVKGKLGLIYEKGNEADVFFNGTKLGNGEFTAFKQPAGNVTVI 200

Query:   174 DVXXXXXXXRIDDANAEILKLRYRQKAMLVDLFMTGDVGFSFGGLNIKGLPFEVNCQ 230
                      ++  ++ + L    ++  +   L +   V F  G +    +   V+C+
Sbjct:   201 VTVLKGSSVKLKSSSRKELTESQKKGKVPFGLRIKAPVKFKVGSVTTWTMTITVDCK 257

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2020163 AT1G54540 "AT1G54540" [Arabidopsis thaliana (taxid:3702)]

 Score = 110 (43.8 bits), Expect = 0.00030, P = 0.00030
 Identities = 40/171 (23%), Positives = 72/171 (42%)

Query:    66 CCAWICISVTAFLIIIFVLGFVAVGILRSSL-PHINVLKVHXXXXXXXXXXRQKFLTMEI 124
             CC   C  V + L+I  +   +AV ++     P +   +V+              L+ E 
Sbjct:    50 CCKIFCW-VLSLLVIALIALAIAVAVVYFVFHPKLPSYEVNSLRVTNLGINLDLSLSAEF 108

Query:   125 SVKLEFENENDKMSLHYEKL-RVEIKAENVRIGHTAIPGFSQRSGNETKIDVXXXXXXXR 183
              V++   N N+K+ ++YEK   + +  +  ++    IP F Q   N TK++V       R
Sbjct:   109 KVEITARNPNEKIGIYYEKGGHIGVWYDKTKLCEGPIPRFYQGHRNVTKLNVALTG---R 165

Query:   184 IDDANAEILKLRYRQKAMLV--DLFMTGDVGFSFGGLNIKGLPFEVNCQKV 232
                 N  +  L+ +Q+   V  DL +   V    G L +K +    +C+ V
Sbjct:   166 AQYGNTVLAALQQQQQTGRVPLDLKVNAPVAIKLGNLKMKKIRILGSCKLV 216


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.139   0.414    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      255       218   0.00091  112 3  11 22  0.46    32
                                                     32  0.39    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  600 (64 KB)
  Total size of DFA:  165 KB (2097 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.92u 0.10s 18.02t   Elapsed:  00:00:01
  Total cpu time:  17.92u 0.10s 18.02t   Elapsed:  00:00:01
  Start:  Sat May 11 12:11:21 2013   End:  Sat May 11 12:11:22 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	255
pfam03168	98	pfam03168, LEA_2, Late embryogenesis abundant prot	1e-04

>gnl|CDD|217400 pfam03168, LEA_2, Late embryogenesis abundant protein

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 20/106 (18%), Positives = 36/106 (33%), Gaps = 11/106 (10%)

Query: 127 KLEFENENDKMSLHYEKLRVEIKAENVRIG-HTAIPGFSQRSGNETKIDVNTTTTNTRID 185
            L   N N    L Y+ L  ++      +   T+    +  +G  T ++V  T +   + 
Sbjct: 1   TLRVRNPNS-FPLPYDGLSYDLSYNGQELASGTSPQPGTVPAGGTTTLEVPVTVSLDDL- 58

Query: 186 DANAEILKLRYRQKAMLVDLFMTGDVGFSFGGLNIKG--LPFEVNC 229
              A +LK      A+ ++L  T       GG       +P     
Sbjct: 59  ---ARLLK---DLLAVGLELPYTLRGRLKVGGPVKGSRTVPLSKEG 98

Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress. The function of these proteins is unknown. This family represents a group of LEA proteins that appear to be distinct from those in pfam02987. The family DUF1511, pfam07427, has now been merged into this family. Length = 98

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	255
PLN03160	219	uncharacterized protein; Provisional	100.0
PF03168	101	LEA_2: Late embryogenesis abundant protein; InterP	99.48
smart00769	100	WHy Water Stress and Hypersensitive response.	98.52
PF12751	387	Vac7: Vacuolar segregation subunit 7; InterPro: IP	98.38
PF07092	238	DUF1356: Protein of unknown function (DUF1356); In	98.15
COG5608	161	LEA14-like dessication related protein [Defense me	97.45
PLN03160	219	uncharacterized protein; Provisional	95.87
PF14155	112	DUF4307: Domain of unknown function (DUF4307)	90.19
KOG3950	292	consensus Gamma/delta sarcoglycan [Cytoskeleton]	87.15
TIGR03602	56	streptolysinS bacteriocin protoxin, streptolysin S	83.97
PF06072	60	Herpes_US9: Alphaherpesvirus tegument protein US9;	83.36
TIGR02588	122	conserved hypothetical protein TIGR02588. The func	81.2

>PLN03160 uncharacterized protein; Provisional

Probab=100.00  E-value=4.7e-37  Score=266.92  Aligned_cols=192  Identities=13%  Similarity=0.198  Sum_probs=156.2

Q ss_pred             CCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHhheeeeeeeCCCEEEEeeEEEeeeeecCCCC-ceeEeEEEEEEEEE
Q 036355           52 DPNSKGHRSCRCFTCCAWICISVTAFLIIIFVLGFVAVGILRSSLPHINVLKVHSSNISISESSR-QKFLTMEISVKLEF  130 (255)
Q Consensus        52 ~~~~~~~~~~~c~~cc~~~~~~i~~liil~~~a~li~~lv~rPk~P~f~V~s~~v~~f~~s~~~~-~~~l~~~l~~tl~~  130 (255)
                      .++.+++++.+|.+||+|++++++++   ++++++++|++||||+|+|+|+++++++|++++++. ...+|+++++++++
T Consensus        25 ~~~~~~~~r~~~~~c~~~~~a~~l~l---~~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v  101 (219)
T PLN03160         25 TNHLKKTRRRNCIKCCGCITATLLIL---ATTILVLVFTVFRVKDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSV  101 (219)
T ss_pred             CcchhccccccceEEHHHHHHHHHHH---HHHHHheeeEEEEccCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEE
Confidence            34554333333445666666554333   456667789999999999999999999999975321 35789999999999


Q ss_pred             ecCCCeeeEEEeCeEEEEEECCeEEeeccCCCccccCCCeEEEEEEEEEeeeecChHHHHHHHHHhcCceEEEEEEEEEE
Q 036355          131 ENENDKMSLHYEKLRVEIKAENVRIGHTAIPGFSQRSGNETKIDVNTTTTNTRIDDANAEILKLRYRQKAMLVDLFMTGD  210 (255)
Q Consensus       131 ~NPN~k~~i~Y~~~~v~v~Y~g~~Lg~~~vp~F~Q~~~ntt~v~~~l~~~~~~v~~~~~~~L~~d~~~g~v~l~v~v~~~  210 (255)
                      +|||. ++|+|++++++++|+|+.+|.+.+|+|+|++++++.+.+++......+.+  ...|.+|+.+|.++|+++++.+
T Consensus       102 ~NPN~-~~~~Y~~~~~~v~Y~g~~vG~a~~p~g~~~ar~T~~l~~tv~~~~~~~~~--~~~L~~D~~~G~v~l~~~~~v~  178 (219)
T PLN03160        102 KNPNV-ASFKYSNTTTTIYYGGTVVGEARTPPGKAKARRTMRMNVTVDIIPDKILS--VPGLLTDISSGLLNMNSYTRIG  178 (219)
T ss_pred             ECCCc-eeEEEcCeEEEEEECCEEEEEEEcCCcccCCCCeEEEEEEEEEEeceecc--chhHHHHhhCCeEEEEEEEEEE
Confidence            99996 89999999999999999999999999999999999999998766554433  2579999999999999999999


Q ss_pred             EEEEEeEEEEeeeeEEEEeeeeeeccccCCCCCCCeEEE
Q 036355          211 VGFSFGGLNIKGLPFEVNCQKVNEAYIKSDDPPKCYTKL  249 (255)
Q Consensus       211 vr~kvg~~~s~~~~v~V~C~~v~~~~~~~~~~~~C~v~~  249 (255)
                      +++++|.+.++++.++++|++.+...-...+.++|..++
T Consensus       179 gkVkv~~i~k~~v~~~v~C~v~V~~~~~~i~~~~C~~~~  217 (219)
T PLN03160        179 GKVKILKIIKKHVVVKMNCTMTVNITSQAIQGQKCKRHV  217 (219)
T ss_pred             EEEEEEEEEEEEEEEEEEeEEEEECCCCEEeccEecccc
Confidence            999999999999999999997776544555678998774

>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]

Probab=99.48  E-value=1.7e-13  Score=103.77  Aligned_cols=98  Identities=17%  Similarity=0.324  Sum_probs=75.2

Q ss_pred             EEEEecCCCeeeEEEeCeEEEEEECCeEEe-eccCCCccccCCCeEEEEEEEEEeeeecChHHHHHHHHHhcCceEEEEE
Q 036355          127 KLEFENENDKMSLHYEKLRVEIKAENVRIG-HTAIPGFSQRSGNETKIDVNTTTTNTRIDDANAEILKLRYRQKAMLVDL  205 (255)
Q Consensus       127 tl~~~NPN~k~~i~Y~~~~v~v~Y~g~~Lg-~~~vp~F~Q~~~ntt~v~~~l~~~~~~v~~~~~~~L~~d~~~g~v~l~v  205 (255)
                      +|+++|||. ++++|++++++++|+|..+| ....++|+|++++++.+.+.+..+...+    .+.+.++. +|...+++
T Consensus         1 ~l~v~NPN~-~~i~~~~~~~~v~~~g~~v~~~~~~~~~~i~~~~~~~v~~~v~~~~~~l----~~~l~~~~-~~~~~~~v   74 (101)
T PF03168_consen    1 TLSVRNPNS-FGIRYDSIEYDVYYNGQRVGTGGSLPPFTIPARSSTTVPVPVSVDYSDL----PRLLKDLL-AGRVPFDV   74 (101)
T ss_dssp             EEEEEESSS-S-EEEEEEEEEEEESSSEEEEEEECE-EEESSSCEEEEEEEEEEEHHHH----HHHHHHHH-HTTSCEEE
T ss_pred             CEEEECCCc-eeEEEeCEEEEEEECCEEEECccccCCeEECCCCcEEEEEEEEEcHHHH----HHHHHhhh-ccccceEE
Confidence            689999997 99999999999999999999 8899999999999999999888775433    56677777 66777777


Q ss_pred             EEEEEEEEEE-eEEEEeeeeEEEEee
Q 036355          206 FMTGDVGFSF-GGLNIKGLPFEVNCQ  230 (255)
Q Consensus       206 ~v~~~vr~kv-g~~~s~~~~v~V~C~  230 (255)
                      .+++++++++ +.....+..+.++|+
T Consensus        75 ~~~~~g~~~v~~~~~~~~~~v~~~~~  100 (101)
T PF03168_consen   75 TYRIRGTFKVLGTPIFGSVRVPVSCE  100 (101)
T ss_dssp             EEEEEEEEE-EE-TTTSCEEEEEEEE
T ss_pred             EEEEEEEEEEcccceeeeEEEeEEeE
Confidence            7788888884 433333455555554

The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.

>smart00769 WHy Water Stress and Hypersensitive response

Probab=98.52  E-value=2e-06  Score=65.73  Aligned_cols=81  Identities=23%  Similarity=0.279  Sum_probs=66.4

Q ss_pred             eEeEEEEEEEEEecCCCeeeEEEeCeEEEEEECCeEEeeccCC-CccccCCCeEEEEEEEEEeeeecChHHHHHHHHHhc
Q 036355          119 FLTMEISVKLEFENENDKMSLHYEKLRVEIKAENVRIGHTAIP-GFSQRSGNETKIDVNTTTTNTRIDDANAEILKLRYR  197 (255)
Q Consensus       119 ~l~~~l~~tl~~~NPN~k~~i~Y~~~~v~v~Y~g~~Lg~~~vp-~F~Q~~~ntt~v~~~l~~~~~~v~~~~~~~L~~d~~  197 (255)
                      .++.++.+++.++||| .+.+.|++++..++|+|..+|++..+ ++..++++++.+.++++.+ .    .....+..++.
T Consensus        12 ~~~~~~~l~l~v~NPN-~~~l~~~~~~y~l~~~g~~v~~g~~~~~~~ipa~~~~~v~v~~~~~-~----~~~~~~~~~l~   85 (100)
T smart00769       12 GLEIEIVLKVKVQNPN-PFPIPVNGLSYDLYLNGVELGSGEIPDSGTLPGNGRTVLDVPVTVN-L----FLAEALIWHIA   85 (100)
T ss_pred             ceEEEEEEEEEEECCC-CCccccccEEEEEEECCEEEEEEEcCCCcEECCCCcEEEEEEEEee-h----hHhHHHHHhhc
Confidence            5789999999999999 59999999999999999999999996 7999999999999988873 2    22455556666


Q ss_pred             Cce-EEEEE
Q 036355          198 QKA-MLVDL  205 (255)
Q Consensus       198 ~g~-v~l~v  205 (255)
                      +|. +++++
T Consensus        86 ~~~~~~y~l   94 (100)
T smart00769       86 NGEEIPYRL   94 (100)
T ss_pred             cCCCccEEE
Confidence            663 44444

>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []

Probab=98.38  E-value=3.8e-06  Score=77.82  Aligned_cols=92  Identities=20%  Similarity=0.265  Sum_probs=58.0

Q ss_pred             CCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHhheeeeeeeCCCEEEEeeEEEeeee-ecCCCCceeEeEEEEEEEEE
Q 036355           52 DPNSKGHRSCRCFTCCAWICISVTAFLIIIFVLGFVAVGILRSSLPHINVLKVHSSNIS-ISESSRQKFLTMEISVKLEF  130 (255)
Q Consensus        52 ~~~~~~~~~~~c~~cc~~~~~~i~~liil~~~a~li~~lv~rPk~P~f~V~s~~v~~f~-~s~~~~~~~l~~~l~~tl~~  130 (255)
                      +++.++++++|.++++|.+ +.|++|+++.+++++++.. -+|      ++++.|..+. +-.+    .--.-|+++|.+
T Consensus       289 e~~~~r~r~~~~r~~~c~~-~~i~~lL~ig~~~gFv~At-tKp------L~~v~v~~I~NVlaS----~qELmfdl~V~A  356 (387)
T PF12751_consen  289 EYQQYRQRSWFSRFASCIY-LSILLLLVIGFAIGFVFAT-TKP------LTDVQVVSIQNVLAS----EQELMFDLTVEA  356 (387)
T ss_pred             chhhhccccHHhhhhHHHH-HHHHHHHHHHHHHHhhhhc-Ccc------cccceEEEeeeeeec----cceEEEeeEEEE
Confidence            3344445566655655544 3344455566777776543 355      4455444332 1111    236779999999


Q ss_pred             ecCCCeeeEEEeCeEEEEEECCeEEe
Q 036355          131 ENENDKMSLHYEKLRVEIKAENVRIG  156 (255)
Q Consensus       131 ~NPN~k~~i~Y~~~~v~v~Y~g~~Lg  156 (255)
                      .||| .+.|.-++++++|+-+..-+|
T Consensus       357 ~NPn-~~~V~I~d~dldIFAKS~yvg  381 (387)
T PF12751_consen  357 FNPN-WFTVTIDDMDLDIFAKSRYVG  381 (387)
T ss_pred             ECCC-eEEEEeccceeeeEecCCccC
Confidence            9999 699999999999988765554

Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.

>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length

Probab=98.15  E-value=0.00013  Score=63.90  Aligned_cols=85  Identities=13%  Similarity=0.191  Sum_probs=63.7

Q ss_pred             eeeCCCEEEEeeEEEeeeeecCCCCceeEeEEEEEEEEEecCCCeeeEEEeCeEEEEEECCeEEeeccCCCc-cccCCCe
Q 036355           92 LRSSLPHINVLKVHSSNISISESSRQKFLTMEISVKLEFENENDKMSLHYEKLRVEIKAENVRIGHTAIPGF-SQRSGNE  170 (255)
Q Consensus        92 ~rPk~P~f~V~s~~v~~f~~s~~~~~~~l~~~l~~tl~~~NPN~k~~i~Y~~~~v~v~Y~g~~Lg~~~vp~F-~Q~~~nt  170 (255)
                      +-|+.-.++-.++......++...  ..+..++.-++.+.||| ...+.-.++++++.|....+|.+..... ..+|++.
T Consensus        96 LfPRsV~v~~~gv~s~~V~f~~~~--~~v~l~itn~lNIsN~N-Fy~V~Vt~~s~qv~~~~~VVG~~~~~~~~~I~Prs~  172 (238)
T PF07092_consen   96 LFPRSVTVSPVGVKSVTVSFNPDK--STVQLNITNTLNISNPN-FYPVTVTNLSIQVLYMKTVVGKGKNSNITVIGPRSS  172 (238)
T ss_pred             EeCcEEEEecCcEEEEEEEEeCCC--CEEEEEEEEEEEccCCC-EEEEEEEeEEEEEEEEEeEEeeeEecceEEecccCC
Confidence            458766666555544444444432  47899999999999999 8999999999999999999998877644 5577777


Q ss_pred             EEEEEEEEE
Q 036355          171 TKIDVNTTT  179 (255)
Q Consensus       171 t~v~~~l~~  179 (255)
                      ..+..++..
T Consensus       173 ~q~~~tV~t  181 (238)
T PF07092_consen  173 KQVNYTVKT  181 (238)
T ss_pred             ceEEEEeeE
Confidence            766666554

The function of this family is unknown.

>COG5608 LEA14-like dessication related protein [Defense mechanisms]

Probab=97.45  E-value=0.022  Score=46.66  Aligned_cols=116  Identities=18%  Similarity=0.320  Sum_probs=81.1

Q ss_pred             CCCEEEEeeEEEeeeeecCCCCceeEeEEEEEEEEEecCCCeeeEEEeCeEEEEEECCeEEeeccC-CCccccCCCeEEE
Q 036355           95 SLPHINVLKVHSSNISISESSRQKFLTMEISVKLEFENENDKMSLHYEKLRVEIKAENVRIGHTAI-PGFSQRSGNETKI  173 (255)
Q Consensus        95 k~P~f~V~s~~v~~f~~s~~~~~~~l~~~l~~tl~~~NPN~k~~i~Y~~~~v~v~Y~g~~Lg~~~v-p~F~Q~~~ntt~v  173 (255)
                      ++|.+.--.+......  .      ....+-.++.++|||. +.+--..++..++-+|..+|.+.. -++..++++..++
T Consensus        31 ~~p~ve~~ka~wGkvt--~------s~~EiV~t~KiyNPN~-fPipVtgl~y~vymN~Iki~eG~~~k~~~v~p~S~~tv  101 (161)
T COG5608          31 KKPGVESMKAKWGKVT--N------SETEIVGTLKIYNPNP-FPIPVTGLQYAVYMNDIKIGEGEILKGTTVPPNSRETV  101 (161)
T ss_pred             CCCCceEEEEEEEEEe--c------cceEEEEEEEecCCCC-cceeeeceEEEEEEcceEeeccccccceEECCCCeEEE
Confidence            6677665555554433  2      2567999999999994 899999999999999999998876 5699999999999


Q ss_pred             EEEEEEeeeecChHHHHHHHHHhcCce-EEEEEEEEEEEEEEEeEEEEeeeeEE
Q 036355          174 DVNTTTTNTRIDDANAEILKLRYRQKA-MLVDLFMTGDVGFSFGGLNIKGLPFE  226 (255)
Q Consensus       174 ~~~l~~~~~~v~~~~~~~L~~d~~~g~-v~l~v~v~~~vr~kvg~~~s~~~~v~  226 (255)
                      .+.+..+...+    -+.+...+.+|. -++++++++.  +++|... ..+.++
T Consensus       102 dv~l~~d~~~~----ke~w~~hi~ngErs~Ir~~i~~~--v~vg~~d-~eVpi~  148 (161)
T COG5608         102 DVPLRLDNSKI----KEWWVTHIENGERSTIRVRIKGV--VKVGGMD-YEVPIK  148 (161)
T ss_pred             EEEEEEehHHH----HHHHHHHhhccCcccEEEEEEEE--EEEccEE-EEEEEE
Confidence            99998775433    344555666664 2444444443  3455444 234443

>PLN03160 uncharacterized protein; Provisional

Probab=95.87  E-value=0.1  Score=45.47  Aligned_cols=111  Identities=12%  Similarity=0.134  Sum_probs=58.3

Q ss_pred             CCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHhheeeeeeeC--CCEEEEeeEEEee-------eeecCCCCceeEeE
Q 036355           52 DPNSKGHRSCRCFTCCAWICISVTAFLIIIFVLGFVAVGILRSS--LPHINVLKVHSSN-------ISISESSRQKFLTM  122 (255)
Q Consensus        52 ~~~~~~~~~~~c~~cc~~~~~~i~~liil~~~a~li~~lv~rPk--~P~f~V~s~~v~~-------f~~s~~~~~~~l~~  122 (255)
                      .+.+++|++++|+.|+|-++++++++++++.  .++++ -=+|+  .-.++++++.++.       +|++-..+=..=|.
T Consensus        28 ~~~~~r~~~~~c~~~~~a~~l~l~~v~~~l~--~~vfr-Pk~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v~NP  104 (219)
T PLN03160         28 LKKTRRRNCIKCCGCITATLLILATTILVLV--FTVFR-VKDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNP  104 (219)
T ss_pred             hhccccccceEEHHHHHHHHHHHHHHHHhee--eEEEE-ccCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEEECC
Confidence            3445566666555566655555566655332  24544 35663  4566666666532       22110000001134


Q ss_pred             EEEEEEEEecCCCeeeEEEeCeEEEEEECCeEEeeccCCCccccCCCeEE
Q 036355          123 EISVKLEFENENDKMSLHYEKLRVEIKAENVRIGHTAIPGFSQRSGNETK  172 (255)
Q Consensus       123 ~l~~tl~~~NPN~k~~i~Y~~~~v~v~Y~g~~Lg~~~vp~F~Q~~~ntt~  172 (255)
                      |. +.+...  |..+.++|+...+.-    ..+..+.++++.+..-+.+.
T Consensus       105 N~-~~~~Y~--~~~~~v~Y~g~~vG~----a~~p~g~~~ar~T~~l~~tv  147 (219)
T PLN03160        105 NV-ASFKYS--NTTTTIYYGGTVVGE----ARTPPGKAKARRTMRMNVTV  147 (219)
T ss_pred             Cc-eeEEEc--CeEEEEEECCEEEEE----EEcCCcccCCCCeEEEEEEE
Confidence            44 445544  345899998865543    34556677777777666664

>PF14155 DUF4307: Domain of unknown function (DUF4307)

Probab=90.19  E-value=3.3  Score=32.25  Aligned_cols=82  Identities=13%  Similarity=0.192  Sum_probs=39.0

Q ss_pred             Hhheeeeee-eCCCEEEEeeEEEeeeeecCCCCceeEeEEEEEEEEEecCCCeeeEEEeCeEEEEEECCeEEe--eccCC
Q 036355           85 GFVAVGILR-SSLPHINVLKVHSSNISISESSRQKFLTMEISVKLEFENENDKMSLHYEKLRVEIKAENVRIG--HTAIP  161 (255)
Q Consensus        85 ~li~~lv~r-Pk~P~f~V~s~~v~~f~~s~~~~~~~l~~~l~~tl~~~NPN~k~~i~Y~~~~v~v~Y~g~~Lg--~~~vp  161 (255)
                      +++.|+.|. ...|.++-   ...+|++.+++     +.++++.++-. |..  ..+.-  --...|++..+|  ...+|
T Consensus        19 ~~~~w~~~~~~~~~~v~~---~~~gf~vv~d~-----~v~v~f~Vtr~-~~~--~a~C~--VrA~~~d~aeVGrreV~vp   85 (112)
T PF14155_consen   19 AVVAWFGYSQFGSPPVSA---EVIGFEVVDDS-----TVEVTFDVTRD-PGR--PAVCI--VRALDYDGAEVGRREVLVP   85 (112)
T ss_pred             HHHhHhhhhhccCCCceE---EEEEEEECCCC-----EEEEEEEEEEC-CCC--CEEEE--EEEEeCCCCEEEEEEEEEC
Confidence            334455555 44555433   33345554442     33333333333 553  33221  122346778888  45566


Q ss_pred             CccccCCCeEEEEEEEEEeee
Q 036355          162 GFSQRSGNETKIDVNTTTTNT  182 (255)
Q Consensus       162 ~F~Q~~~ntt~v~~~l~~~~~  182 (255)
                      +   +...+..+..++.....
T Consensus        86 ~---~~~~~~~~~v~v~Tt~~  103 (112)
T PF14155_consen   86 P---SGERTVRVTVTVRTTAR  103 (112)
T ss_pred             C---CCCcEEEEEEEEEecCC
Confidence            6   44455555666554443

>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]

Probab=87.15  E-value=0.93  Score=40.09  Aligned_cols=24  Identities=21%  Similarity=0.261  Sum_probs=19.5

Q ss_pred             eeEeEEEEEEEEEecCCCeeeEEE
Q 036355          118 KFLTMEISVKLEFENENDKMSLHY  141 (255)
Q Consensus       118 ~~l~~~l~~tl~~~NPN~k~~i~Y  141 (255)
                      ..+...=+++++++|||+++.=++
T Consensus       104 l~~~S~rnvtvnarn~~g~v~~~l  127 (292)
T KOG3950|consen  104 LYLQSARNVTVNARNPNGKVTGQL  127 (292)
T ss_pred             eEEEeccCeeEEccCCCCceeeeE
Confidence            567788899999999999875443

>TIGR03602 streptolysinS bacteriocin protoxin, streptolysin S family

Probab=83.97  E-value=0.14  Score=33.83  Aligned_cols=10  Identities=40%  Similarity=1.411  Sum_probs=4.9

Q ss_pred             cccchhhHHH
Q 036355           60 SCRCFTCCAW   69 (255)
Q Consensus        60 ~~~c~~cc~~   69 (255)
                      .|||++||||
T Consensus        25 gcccccc~cc   34 (56)
T TIGR03602        25 GCCCCCCCCC   34 (56)
T ss_pred             CeEEEeccEE
Confidence            4655444443

Members of this family are bacteriocin precursors. These small, ribosomally produced polypeptide precursors are extensively processed post-translationally. This family belongs to a class of heterocycle-containing bacteriocins, including streptolysin S from Streptococcus pyogenes, and related bacteriocins from Streptococcus iniae and Clostridium botulinum. Streptolysin S is hemolytic. Bacteriocin genes in general are small and highly diverse, with odd sequence composition, and are easily missed by many gene-finding programs.

>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses

Probab=83.36  E-value=0.59  Score=32.24  Aligned_cols=14  Identities=21%  Similarity=0.261  Sum_probs=6.4

Q ss_pred             cccchhhHHHHHHH
Q 036355           60 SCRCFTCCAWICIS   73 (255)
Q Consensus        60 ~~~c~~cc~~~~~~   73 (255)
                      +..|..|....+++
T Consensus        29 rRrc~~~v~~v~~~   42 (60)
T PF06072_consen   29 RRRCRLAVAIVFAV   42 (60)
T ss_pred             HHHHHHHHHHHHHH
Confidence            34455455444433

The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument

>TIGR02588 conserved hypothetical protein TIGR02588

Probab=81.20  E-value=5.6  Score=31.57  Aligned_cols=57  Identities=16%  Similarity=0.314  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHHHHHHhheeee--eeeCCCEEEEeeEEEeeeeecCCCCceeEeEEEEEEEEEecCCCe
Q 036355           69 WICISVTAFLIIIFVLGFVAVGI--LRSSLPHINVLKVHSSNISISESSRQKFLTMEISVKLEFENENDK  136 (255)
Q Consensus        69 ~~~~~i~~liil~~~a~li~~lv--~rPk~P~f~V~s~~v~~f~~s~~~~~~~l~~~l~~tl~~~NPN~k  136 (255)
                      |+.+.|.++ ++++++++++|..  -+++.|.+.+......+          .....+-+-++++|--.+
T Consensus         5 Wvt~~Is~~-ill~viglv~y~~l~~~~~pp~l~v~~~~~~r----------~~~gqyyVpF~V~N~gg~   63 (122)
T TIGR02588         5 WVTFGISTL-ILAAMFGLVAYDWLRYSNKAAVLEVAPAEVER----------MQTGQYYVPFAIHNLGGT   63 (122)
T ss_pred             hhhHHHHHH-HHHHHHHHHHHHhhccCCCCCeEEEeehheeE----------EeCCEEEEEEEEEeCCCc
Confidence            554444333 3345556666544  45688999887765543          234457777788887754

The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	255
1yyc_A	174	LEA protein, putative late embryogenesis abundant	98.24
3but_A	136	Uncharacterized protein AF_0446; lipid binding pro	98.04
1xo8_A	151	AT1G01470; structural genomics, protein structure	98.02

>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}

Probab=98.24  E-value=4.8e-06  Score=68.93  Aligned_cols=101  Identities=17%  Similarity=0.104  Sum_probs=78.8

Q ss_pred             CCCEEEEeeEEEeeeeecCCCCceeEeEEEEEEEEEecCCCeeeEEEeCeEEEEEECCeEEeeccCC-CccccCCCeEEE
Q 036355           95 SLPHINVLKVHSSNISISESSRQKFLTMEISVKLEFENENDKMSLHYEKLRVEIKAENVRIGHTAIP-GFSQRSGNETKI  173 (255)
Q Consensus        95 k~P~f~V~s~~v~~f~~s~~~~~~~l~~~l~~tl~~~NPN~k~~i~Y~~~~v~v~Y~g~~Lg~~~vp-~F~Q~~~ntt~v  173 (255)
                      +.|+++++++.+.+++.        ...+|.+.++++|||. ..+-+..++.++.-+|..|+++..+ ++..++.+++.+
T Consensus        43 ~~PeV~v~~v~~~~~~l--------~~~~~~l~LrV~NPN~-~pLpi~gi~Y~L~vnG~~lasG~s~~~~tIpa~g~~~v  113 (174)
T 1yyc_A           43 PTPEATVDDVDFKGVTR--------DGVDYHAKVSVKNPYS-QSIPICQISYILKSATRTIASGTIPDPGSLVGSGTTVL  113 (174)
T ss_dssp             CCCEEEEEEEEEEEECS--------SSEEEEEEEEEEECSS-SCCBCCSEEEEEEESSSCEEEEEESCCCBCCSSEEEEE
T ss_pred             CCCEEEEEEeEEecccc--------ceEEEEEEEEEECCCC-CCccccceEEEEEECCEEEEEEecCCCceECCCCcEEE
Confidence            77999999999987653        2577999999999995 9999999999999999999999887 588899999999


Q ss_pred             EEEEEEeeeecChHHHHHHHHHhcCc-eEEEEEEEEE
Q 036355          174 DVNTTTTNTRIDDANAEILKLRYRQK-AMLVDLFMTG  209 (255)
Q Consensus       174 ~~~l~~~~~~v~~~~~~~L~~d~~~g-~v~l~v~v~~  209 (255)
                      .+.++...     .....+..++..+ .++.++++..
T Consensus       114 ~Vpv~v~~-----~~l~~~~~~l~~~~~i~Y~L~g~L  145 (174)
T 1yyc_A          114 DVPVKVAY-----SIAVSLMKDMCTDWDIDYQLDIGL  145 (174)
T ss_dssp             EEEEEESH-----HHHHHTCCCCCSSEEECEEEEEEE
T ss_pred             EEEEEEEH-----HHHHHHHHhcCCCCccceEEEEEE
Confidence            99887652     2223333455443 4666664433

>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304}

Probab=98.04  E-value=0.00014  Score=57.82  Aligned_cols=72  Identities=11%  Similarity=0.144  Sum_probs=62.2

Q ss_pred             eEEEEEEEEEecCCCeeeEEEeCeEEEEEECCeEEeecc-CCCccccCCCeEEEEEEEEEeeeecChHHHHHHH
Q 036355          121 TMEISVKLEFENENDKMSLHYEKLRVEIKAENVRIGHTA-IPGFSQRSGNETKIDVNTTTTNTRIDDANAEILK  193 (255)
Q Consensus       121 ~~~l~~tl~~~NPN~k~~i~Y~~~~v~v~Y~g~~Lg~~~-vp~F~Q~~~ntt~v~~~l~~~~~~v~~~~~~~L~  193 (255)
                      .+.|.+.+.+.||| .+.+.++.++..+..+|..||++. ...+..++.+++.+.+.+..+...+.+.....++
T Consensus        17 ~t~~~~~l~V~NPN-~~~l~i~gl~y~v~lng~~la~G~s~~~~~I~~~g~~~v~v~~~i~~~~l~~~~~~hi~   89 (136)
T 3but_A           17 QTEIVALAKVRNED-VVPIVVSGYHYTIEMNGVKVADGYENSPVTVKPASATTLKFSLRLNNSFLREWWVTHIA   89 (136)
T ss_dssp             EEEEEEEEEEECCS-SSCEEEEEEEEEEEETTEEEEEEEECCCEEECTTCEEEEEEEEEEEHHHHTTHHHHHHH
T ss_pred             EEEEEEEEEEeCCC-CcceeeeceEEEEEECCEEEEeeeecCceEECCCCcEEEEEEEEEchHHhHHHHHHHhh
Confidence            78899999999999 599999999999999999999887 5689999999999999999887666555555554

>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1

Probab=98.02  E-value=5.4e-06  Score=67.10  Aligned_cols=101  Identities=16%  Similarity=0.123  Sum_probs=77.4

Q ss_pred             CCCEEEEeeEEEeeeeecCCCCceeEeEEEEEEEEEecCCCeeeEEEeCeEEEEEECCeEEeeccCC-CccccCCCeEEE
Q 036355           95 SLPHINVLKVHSSNISISESSRQKFLTMEISVKLEFENENDKMSLHYEKLRVEIKAENVRIGHTAIP-GFSQRSGNETKI  173 (255)
Q Consensus        95 k~P~f~V~s~~v~~f~~s~~~~~~~l~~~l~~tl~~~NPN~k~~i~Y~~~~v~v~Y~g~~Lg~~~vp-~F~Q~~~ntt~v  173 (255)
                      +.|+++++++.+.+++.        ...++.+.++++|||. ..+.+..++.++.-+|..++++..+ ++..++++++.+
T Consensus        20 ~~P~v~v~~v~~~~~~~--------~~~~~~~~l~V~NPN~-~~lpi~gi~y~l~vng~~lasG~~~~~~~ipa~g~~~v   90 (151)
T 1xo8_A           20 PKPEGSVTDVDLKDVNR--------DSVEYLAKVSVTNPYS-HSIPICEISFTFHSAGREIGKGKIPDPGSLKAKDMTAL   90 (151)
T ss_dssp             CSCCCBCSEEEECCCTT--------TEECEEEEEEEECSSS-SCCCCEEEEEEEESSSSCEEEEEEEECCCCSSSSEEEE
T ss_pred             CCCEEEEEEeEEeccCc--------ceeEEEEEEEEECCCC-CCcccccEEEEEEECCEEEEEEecCCCcEECCCCcEEE
Confidence            67999999998876542        3567999999999995 8999999999999999999999887 688899999999


Q ss_pred             EEEEEEeeeecChHHHHHHHHHhc-CceEEEEEEEEE
Q 036355          174 DVNTTTTNTRIDDANAEILKLRYR-QKAMLVDLFMTG  209 (255)
Q Consensus       174 ~~~l~~~~~~v~~~~~~~L~~d~~-~g~v~l~v~v~~  209 (255)
                      .+.++....     ...++..++. .+.++.+++++.
T Consensus        91 ~vpv~v~~~-----~l~~~~~~l~~~~~i~Y~l~g~l  122 (151)
T 1xo8_A           91 DIPVVVPYS-----ILFNLARDVGVDWDIDYELQIGL  122 (151)
T ss_dssp             EECCCEEHH-----HHHHHHHHHHHHSEEEEEEEEEE
T ss_pred             EEEEEEEHH-----HHHHHHHhcccCCcccEEEEEEE
Confidence            988776532     2233334433 345666665444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	255
d1xo8a_	151	Putative dessication related protein LEA14 {Thale	98.19

>d1xo8a_ b.1.25.1 (A:) Putative dessication related protein LEA14 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: LEA14-like
family: LEA14-like
domain: Putative dessication related protein LEA14
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.19  E-value=9e-07  Score=69.77  Aligned_cols=103  Identities=16%  Similarity=0.117  Sum_probs=78.0

Q ss_pred             eeCCCEEEEeeEEEeeeeecCCCCceeEeEEEEEEEEEecCCCeeeEEEeCeEEEEEECCeEEeeccCC-CccccCCCeE
Q 036355           93 RSSLPHINVLKVHSSNISISESSRQKFLTMEISVKLEFENENDKMSLHYEKLRVEIKAENVRIGHTAIP-GFSQRSGNET  171 (255)
Q Consensus        93 rPk~P~f~V~s~~v~~f~~s~~~~~~~l~~~l~~tl~~~NPN~k~~i~Y~~~~v~v~Y~g~~Lg~~~vp-~F~Q~~~ntt  171 (255)
                      +=+.|++++.++++.+++..        .+++.+.++++|||. +++..+.++.+++.+|..++++..+ ++..++++++
T Consensus        18 ~~~kPev~l~~v~i~~v~~~--------~~~l~~~l~V~NPN~-~~l~i~~l~y~l~~~g~~ia~G~~~~~~~ipa~~~~   88 (151)
T d1xo8a_          18 AIPKPEGSVTDVDLKDVNRD--------SVEYLAKVSVTNPYS-HSIPICEISFTFHSAGREIGKGKIPDPGSLKAKDMT   88 (151)
T ss_dssp             CCCSCCCBCSEEEECCCTTT--------EECEEEEEEEECSSS-SCCCCEEEEEEEESSSSCEEEEEEEECCCCSSSSEE
T ss_pred             CCCCCeEEEEEEEeeecccc--------eEEEEEEEEEECCCC-CceeeeeEEEEEEECCEEEEeEecCCCcEEcCCCcE
Confidence            44789999999998876532        567999999999994 8999999999999999999998886 6788999999


Q ss_pred             EEEEEEEEeeeecChHHHHHHHHHhcC-ceEEEEEEEEE
Q 036355          172 KIDVNTTTTNTRIDDANAEILKLRYRQ-KAMLVDLFMTG  209 (255)
Q Consensus       172 ~v~~~l~~~~~~v~~~~~~~L~~d~~~-g~v~l~v~v~~  209 (255)
                      .+.+.++...    .+. ..+..++.+ +.++.++++..
T Consensus        89 ~v~vpv~v~~----~~l-~~~~~~i~~~~~i~Y~l~g~l  122 (151)
T d1xo8a_          89 ALDIPVVVPY----SIL-FNLARDVGVDWDIDYELQIGL  122 (151)
T ss_dssp             EEEECCCEEH----HHH-HHHHHHHHHHSEEEEEEEEEE
T ss_pred             EEEEEEEEEH----HHH-HHHHHhhccCCCccEEEEEEE
Confidence            9999887643    222 334444443 44555544333